Query 007782
Match_columns 590
No_of_seqs 236 out of 1363
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 15:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 2E-223 3E-228 1760.5 47.9 559 30-589 8-568 (582)
2 PLN03129 NADP-dependent malic 100.0 1E-211 3E-216 1707.2 53.7 542 49-590 39-581 (581)
3 PRK13529 malate dehydrogenase; 100.0 7E-212 2E-216 1704.7 51.2 539 48-590 13-561 (563)
4 PTZ00317 NADP-dependent malic 100.0 2E-209 4E-214 1684.6 51.2 538 46-585 13-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 1E-119 3E-124 950.0 35.6 425 85-590 1-432 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 2E-111 3E-116 949.3 34.9 374 126-579 30-420 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 1E-110 2E-115 947.3 34.9 373 126-579 34-424 (763)
8 PRK07232 bifunctional malic en 100.0 2E-109 5E-114 932.1 35.2 361 127-566 27-405 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 9E-100 2E-104 772.6 29.3 277 306-584 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 1.3E-96 3E-101 741.4 20.8 252 306-559 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1E-93 2.3E-98 719.7 25.5 251 306-558 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 9.3E-84 2E-88 619.2 8.4 181 116-296 2-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 9.2E-59 2E-63 459.6 22.0 223 306-558 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 2.6E-08 5.7E-13 84.9 11.6 86 308-445 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.7 0.0012 2.6E-08 72.5 17.0 160 251-448 105-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.3 0.0012 2.5E-08 72.0 9.6 121 307-448 158-280 (417)
17 PRK09414 glutamate dehydrogena 97.1 0.02 4.4E-07 63.4 17.2 188 252-460 138-357 (445)
18 PLN02477 glutamate dehydrogena 97.1 0.016 3.5E-07 63.6 15.9 186 252-460 112-324 (410)
19 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0029 6.3E-08 66.2 9.9 136 286-448 139-276 (311)
20 cd05211 NAD_bind_Glu_Leu_Phe_V 97.0 0.0078 1.7E-07 60.5 12.3 130 309-460 2-140 (217)
21 cd00401 AdoHcyase S-adenosyl-L 97.0 0.011 2.4E-07 64.9 14.0 129 298-460 163-302 (413)
22 PRK00045 hemA glutamyl-tRNA re 97.0 0.0028 6E-08 69.1 9.1 120 308-448 161-283 (423)
23 TIGR00936 ahcY adenosylhomocys 96.9 0.015 3.2E-07 63.8 13.9 127 298-458 156-293 (406)
24 PRK14031 glutamate dehydrogena 96.8 0.046 9.9E-07 60.7 16.5 181 252-448 134-347 (444)
25 PTZ00075 Adenosylhomocysteinas 96.8 0.053 1.1E-06 60.7 16.9 122 298-447 215-343 (476)
26 cd01080 NAD_bind_m-THF_DH_Cycl 96.8 0.01 2.2E-07 57.5 10.1 90 315-448 29-119 (168)
27 PLN02494 adenosylhomocysteinas 96.7 0.018 3.9E-07 64.3 13.0 131 298-461 215-355 (477)
28 PF01488 Shikimate_DH: Shikima 96.6 0.0026 5.6E-08 58.7 4.8 102 326-449 8-113 (135)
29 TIGR02853 spore_dpaA dipicolin 96.6 0.015 3.2E-07 60.6 10.8 138 307-473 128-265 (287)
30 PRK14030 glutamate dehydrogena 96.5 0.11 2.4E-06 57.7 17.5 189 252-460 134-357 (445)
31 COG0373 HemA Glutamyl-tRNA red 96.4 0.014 3.1E-07 64.1 9.7 215 285-563 138-362 (414)
32 PRK08306 dipicolinate synthase 96.2 0.041 8.9E-07 57.5 11.1 128 312-473 134-266 (296)
33 PLN00203 glutamyl-tRNA reducta 96.2 0.023 4.9E-07 64.1 9.7 200 308-561 243-455 (519)
34 PRK14982 acyl-ACP reductase; P 96.1 0.034 7.4E-07 59.7 10.4 113 309-449 134-250 (340)
35 cd01075 NAD_bind_Leu_Phe_Val_D 96.1 0.036 7.8E-07 54.7 9.8 123 308-460 4-129 (200)
36 PTZ00079 NADP-specific glutama 96.1 0.5 1.1E-05 52.8 19.5 180 252-449 143-358 (454)
37 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.056 1.2E-06 54.7 11.2 123 307-448 8-140 (227)
38 PRK14192 bifunctional 5,10-met 96.0 0.041 8.8E-07 57.6 9.8 108 308-459 137-249 (283)
39 PLN00106 malate dehydrogenase 95.8 0.045 9.7E-07 58.3 9.6 118 315-448 4-138 (323)
40 PRK13940 glutamyl-tRNA reducta 95.8 0.031 6.6E-07 61.4 8.4 211 286-561 142-359 (414)
41 cd05313 NAD_bind_2_Glu_DH NAD( 95.8 0.17 3.6E-06 52.5 13.3 133 308-460 16-167 (254)
42 PRK08293 3-hydroxybutyryl-CoA 95.7 0.13 2.8E-06 52.9 12.4 191 331-577 4-221 (287)
43 PRK14175 bifunctional 5,10-met 95.6 0.071 1.5E-06 56.1 9.9 95 308-446 136-231 (286)
44 PRK12549 shikimate 5-dehydroge 95.6 0.036 7.8E-07 57.6 7.7 91 314-421 111-203 (284)
45 cd01078 NAD_bind_H4MPT_DH NADP 95.4 0.079 1.7E-06 51.2 8.9 54 309-374 7-61 (194)
46 cd01065 NAD_bind_Shikimate_DH 95.4 0.051 1.1E-06 49.8 7.3 108 315-448 4-120 (155)
47 TIGR00518 alaDH alanine dehydr 94.8 0.1 2.2E-06 56.3 8.5 95 328-446 165-268 (370)
48 PRK00676 hemA glutamyl-tRNA re 94.6 0.17 3.7E-06 54.5 9.5 122 286-449 136-265 (338)
49 TIGR01809 Shik-DH-AROM shikima 94.5 0.08 1.7E-06 54.9 6.6 94 315-428 108-208 (282)
50 PF00208 ELFV_dehydrog: Glutam 94.3 0.11 2.5E-06 53.1 7.0 130 305-448 6-151 (244)
51 PF00670 AdoHcyase_NAD: S-aden 94.3 0.31 6.6E-06 47.6 9.5 120 307-460 3-123 (162)
52 cd05197 GH4_glycoside_hydrolas 94.2 0.093 2E-06 57.8 6.6 105 331-448 1-146 (425)
53 PF03807 F420_oxidored: NADP o 94.2 0.068 1.5E-06 45.5 4.3 95 332-447 1-96 (96)
54 PRK10792 bifunctional 5,10-met 94.1 0.47 1E-05 50.0 11.2 92 310-445 139-231 (285)
55 PRK05086 malate dehydrogenase; 93.9 0.31 6.6E-06 51.5 9.5 105 331-448 1-121 (312)
56 PF00056 Ldh_1_N: lactate/mala 93.8 0.047 1E-06 51.1 2.9 104 332-448 2-121 (141)
57 PRK09424 pntA NAD(P) transhydr 93.5 0.39 8.5E-06 54.3 9.9 182 237-455 82-296 (509)
58 cd00650 LDH_MDH_like NAD-depen 93.4 0.16 3.4E-06 51.8 6.1 126 333-472 1-145 (263)
59 cd05296 GH4_P_beta_glucosidase 93.3 0.15 3.2E-06 56.2 6.1 125 331-471 1-166 (419)
60 TIGR02356 adenyl_thiF thiazole 93.2 0.13 2.9E-06 50.7 5.2 38 326-374 17-54 (202)
61 PRK14191 bifunctional 5,10-met 93.1 0.35 7.5E-06 51.0 8.1 83 310-430 137-220 (285)
62 PRK09260 3-hydroxybutyryl-CoA 93.0 0.19 4E-06 51.8 6.0 32 331-374 2-33 (288)
63 PRK06130 3-hydroxybutyryl-CoA 93.0 3 6.5E-05 43.2 14.9 121 331-477 5-142 (311)
64 cd05291 HicDH_like L-2-hydroxy 92.9 0.35 7.6E-06 50.5 8.0 126 332-473 2-144 (306)
65 PRK08605 D-lactate dehydrogena 92.9 1.6 3.4E-05 46.5 12.9 153 262-446 59-237 (332)
66 PRK06129 3-hydroxyacyl-CoA deh 92.8 0.31 6.8E-06 50.7 7.4 38 484-521 184-221 (308)
67 PRK08328 hypothetical protein; 92.7 0.062 1.3E-06 54.2 2.0 120 292-449 7-131 (231)
68 PTZ00325 malate dehydrogenase; 92.6 0.61 1.3E-05 49.8 9.4 107 328-448 6-128 (321)
69 TIGR02354 thiF_fam2 thiamine b 92.6 0.16 3.5E-06 50.4 4.7 108 326-453 17-127 (200)
70 PRK12749 quinate/shikimate deh 92.5 0.27 5.8E-06 51.5 6.4 50 314-374 108-157 (288)
71 cd05212 NAD_bind_m-THF_DH_Cycl 92.4 1 2.2E-05 42.7 9.7 82 311-430 9-91 (140)
72 PLN02928 oxidoreductase family 92.3 1.1 2.5E-05 48.0 11.0 139 307-469 120-284 (347)
73 PRK07531 bifunctional 3-hydrox 92.2 1.9 4.1E-05 48.4 13.0 152 331-527 5-173 (495)
74 PRK00066 ldh L-lactate dehydro 92.1 0.32 6.8E-06 51.5 6.4 127 330-473 6-149 (315)
75 cd01079 NAD_bind_m-THF_DH NAD 92.1 0.98 2.1E-05 45.4 9.5 102 312-430 35-147 (197)
76 PRK14027 quinate/shikimate deh 91.8 0.35 7.6E-06 50.5 6.3 49 315-374 112-160 (283)
77 PRK08223 hypothetical protein; 91.6 0.32 6.9E-06 51.3 5.8 58 289-375 4-61 (287)
78 PRK00257 erythronate-4-phospha 91.6 1.4 3E-05 48.2 10.8 169 297-506 80-263 (381)
79 COG0578 GlpA Glycerol-3-phosph 91.4 1.1 2.4E-05 51.0 10.1 162 329-563 11-179 (532)
80 cd05298 GH4_GlvA_pagL_like Gly 91.3 0.37 8E-06 53.5 6.2 130 331-475 1-171 (437)
81 PTZ00117 malate dehydrogenase; 91.1 0.92 2E-05 48.0 8.7 126 329-472 4-148 (319)
82 PRK15076 alpha-galactosidase; 91.1 0.5 1.1E-05 52.2 6.9 129 331-475 2-174 (431)
83 PRK12548 shikimate 5-dehydroge 91.0 0.49 1.1E-05 49.3 6.4 58 298-374 102-159 (289)
84 PRK08762 molybdopterin biosynt 91.0 0.48 1E-05 51.1 6.5 38 326-374 131-168 (376)
85 PTZ00082 L-lactate dehydrogena 90.8 0.66 1.4E-05 49.2 7.3 124 330-471 6-153 (321)
86 PRK12475 thiamine/molybdopteri 90.7 0.32 7E-06 52.0 4.8 39 326-375 20-58 (338)
87 PRK14189 bifunctional 5,10-met 90.6 0.97 2.1E-05 47.7 8.2 83 310-430 138-221 (285)
88 PRK14619 NAD(P)H-dependent gly 90.5 1.9 4.1E-05 44.9 10.3 33 330-374 4-36 (308)
89 PRK00258 aroE shikimate 5-dehy 90.5 0.61 1.3E-05 48.1 6.5 88 314-421 106-196 (278)
90 PRK14194 bifunctional 5,10-met 90.5 1 2.2E-05 47.9 8.3 92 310-445 139-231 (301)
91 PRK15438 erythronate-4-phospha 90.4 2.5 5.3E-05 46.3 11.3 116 308-459 94-217 (378)
92 PRK05600 thiamine biosynthesis 90.2 0.59 1.3E-05 50.7 6.4 102 326-443 37-162 (370)
93 PF00899 ThiF: ThiF family; I 90.2 0.5 1.1E-05 43.2 5.0 37 329-376 1-37 (135)
94 cd05297 GH4_alpha_glucosidase_ 90.1 0.63 1.4E-05 51.1 6.6 127 332-474 2-171 (423)
95 cd00704 MDH Malate dehydrogena 90.0 1.2 2.6E-05 47.4 8.4 110 332-448 2-129 (323)
96 PRK14176 bifunctional 5,10-met 90.0 1.3 2.7E-05 46.9 8.4 84 309-430 143-227 (287)
97 PRK14178 bifunctional 5,10-met 89.9 0.9 2E-05 47.8 7.2 84 309-430 131-215 (279)
98 PF02826 2-Hacid_dh_C: D-isome 89.9 0.94 2E-05 43.6 6.9 115 321-467 27-147 (178)
99 PRK06035 3-hydroxyacyl-CoA deh 89.8 5 0.00011 41.4 12.5 32 331-374 4-35 (291)
100 COG0169 AroE Shikimate 5-dehyd 89.8 0.71 1.5E-05 48.6 6.3 48 316-374 110-159 (283)
101 TIGR00561 pntA NAD(P) transhyd 89.5 2.8 6.1E-05 47.7 11.2 185 227-446 67-285 (511)
102 TIGR02992 ectoine_eutC ectoine 89.4 2.2 4.7E-05 45.2 9.7 115 316-457 117-237 (326)
103 PRK06223 malate dehydrogenase; 89.2 0.87 1.9E-05 47.2 6.5 119 331-474 3-147 (307)
104 PRK07688 thiamine/molybdopteri 88.9 0.51 1.1E-05 50.6 4.6 39 326-375 20-58 (339)
105 PF01210 NAD_Gly3P_dh_N: NAD-d 88.7 0.44 9.5E-06 45.0 3.6 85 332-436 1-93 (157)
106 COG0334 GdhA Glutamate dehydro 88.6 12 0.00026 41.6 14.8 187 251-460 111-325 (411)
107 COG0111 SerA Phosphoglycerate 88.3 2.8 6.1E-05 44.8 9.7 111 298-433 89-224 (324)
108 PF02056 Glyco_hydro_4: Family 88.2 0.76 1.6E-05 45.6 5.0 109 332-454 1-151 (183)
109 cd01336 MDH_cytoplasmic_cytoso 88.1 3.2 6.9E-05 44.2 9.9 122 331-462 3-142 (325)
110 PRK14851 hypothetical protein; 87.9 1.8 3.9E-05 50.7 8.6 123 326-464 39-194 (679)
111 PRK14184 bifunctional 5,10-met 87.8 1.7 3.6E-05 46.0 7.5 87 310-430 137-224 (286)
112 PF01113 DapB_N: Dihydrodipico 87.6 2.6 5.5E-05 38.5 7.8 34 332-375 2-36 (124)
113 PRK14190 bifunctional 5,10-met 87.6 2.1 4.5E-05 45.3 8.0 83 310-430 138-221 (284)
114 TIGR01915 npdG NADPH-dependent 87.5 2.1 4.5E-05 42.5 7.6 96 332-450 2-106 (219)
115 TIGR01763 MalateDH_bact malate 87.3 1.2 2.7E-05 46.8 6.2 124 331-472 2-144 (305)
116 cd01337 MDH_glyoxysomal_mitoch 87.2 2.4 5.3E-05 45.0 8.4 102 332-448 2-120 (310)
117 PRK08374 homoserine dehydrogen 87.1 3.2 7E-05 44.4 9.3 104 331-442 3-120 (336)
118 PRK14183 bifunctional 5,10-met 86.9 2.5 5.4E-05 44.7 8.1 84 309-430 136-220 (281)
119 PRK04346 tryptophan synthase s 86.9 12 0.00026 41.3 13.7 95 224-351 23-128 (397)
120 PRK07574 formate dehydrogenase 86.6 6.7 0.00014 43.1 11.5 116 325-471 187-308 (385)
121 TIGR00872 gnd_rel 6-phosphoglu 86.6 2 4.3E-05 44.7 7.3 99 332-456 2-102 (298)
122 PRK12550 shikimate 5-dehydroge 86.6 1.5 3.2E-05 45.7 6.3 48 315-374 108-155 (272)
123 PRK08644 thiamine biosynthesis 86.4 0.75 1.6E-05 46.0 3.9 38 326-374 24-61 (212)
124 COG1486 CelF Alpha-galactosida 86.2 0.55 1.2E-05 52.3 3.0 130 329-473 2-172 (442)
125 TIGR01772 MDH_euk_gproteo mala 86.2 4.3 9.3E-05 43.2 9.5 126 332-472 1-146 (312)
126 PLN02306 hydroxypyruvate reduc 86.1 5.7 0.00012 43.5 10.7 174 296-500 107-323 (386)
127 PRK14179 bifunctional 5,10-met 86.0 2.8 6E-05 44.4 7.9 83 310-430 138-221 (284)
128 PF01262 AlaDh_PNT_C: Alanine 85.7 0.26 5.5E-06 47.1 0.2 89 328-433 18-130 (168)
129 PRK11880 pyrroline-5-carboxyla 85.7 2.7 5.8E-05 42.5 7.5 120 331-478 3-122 (267)
130 PRK14177 bifunctional 5,10-met 85.6 3.4 7.4E-05 43.7 8.3 82 311-430 140-222 (284)
131 cd01338 MDH_choloroplast_like 85.5 4.2 9.2E-05 43.3 9.1 110 331-448 3-131 (322)
132 cd00757 ThiF_MoeB_HesA_family 85.4 0.98 2.1E-05 45.3 4.2 104 326-448 17-123 (228)
133 PRK14174 bifunctional 5,10-met 85.3 2.8 6E-05 44.5 7.6 86 311-430 140-226 (295)
134 PRK06436 glycerate dehydrogena 85.1 8.9 0.00019 40.6 11.3 92 325-448 117-212 (303)
135 PRK13243 glyoxylate reductase; 85.1 7 0.00015 41.7 10.5 167 297-500 89-291 (333)
136 PRK14618 NAD(P)H-dependent gly 85.0 1.2 2.6E-05 46.6 4.7 32 331-374 5-36 (328)
137 TIGR02355 moeB molybdopterin s 84.6 1.1 2.3E-05 45.8 4.1 103 326-448 20-126 (240)
138 PRK14188 bifunctional 5,10-met 84.4 3.1 6.7E-05 44.2 7.5 81 310-428 138-219 (296)
139 PRK14172 bifunctional 5,10-met 84.4 4.3 9.4E-05 42.8 8.4 83 310-430 138-221 (278)
140 PF02882 THF_DHG_CYH_C: Tetrah 84.3 4.7 0.0001 39.2 8.1 83 310-430 16-99 (160)
141 PRK00094 gpsA NAD(P)H-dependen 84.0 1.8 3.8E-05 44.6 5.4 102 332-449 3-109 (325)
142 cd05290 LDH_3 A subgroup of L- 83.8 2.9 6.3E-05 44.3 7.0 102 332-448 1-122 (307)
143 PRK07634 pyrroline-5-carboxyla 83.6 1.8 3.8E-05 43.0 5.0 118 329-471 3-121 (245)
144 TIGR01759 MalateDH-SF1 malate 83.5 5.5 0.00012 42.6 9.0 121 331-462 4-143 (323)
145 PRK15116 sulfur acceptor prote 83.5 3.2 7E-05 43.4 7.1 108 326-451 26-136 (268)
146 cd01485 E1-1_like Ubiquitin ac 83.4 1.1 2.3E-05 44.4 3.3 39 326-375 15-53 (198)
147 PRK08410 2-hydroxyacid dehydro 83.4 10 0.00022 40.1 10.8 136 296-467 84-252 (311)
148 cd01339 LDH-like_MDH L-lactate 83.4 2.3 5E-05 44.3 5.9 117 333-472 1-141 (300)
149 PRK14193 bifunctional 5,10-met 83.3 4.6 0.0001 42.7 8.1 85 310-430 138-223 (284)
150 PLN02516 methylenetetrahydrofo 83.3 4.8 0.0001 42.9 8.3 84 309-430 146-230 (299)
151 TIGR01285 nifN nitrogenase mol 83.2 2 4.4E-05 47.4 5.7 81 318-419 299-382 (432)
152 PRK14171 bifunctional 5,10-met 83.2 4.9 0.00011 42.6 8.3 85 308-430 137-222 (288)
153 PRK14106 murD UDP-N-acetylmura 83.0 4 8.8E-05 44.3 7.9 112 327-472 2-116 (450)
154 PRK08291 ectoine utilization p 83.0 5.1 0.00011 42.5 8.4 115 316-457 120-240 (330)
155 PRK14187 bifunctional 5,10-met 82.9 5.3 0.00012 42.5 8.5 83 310-430 140-223 (294)
156 PRK15469 ghrA bifunctional gly 82.8 6 0.00013 42.0 8.9 160 326-526 132-297 (312)
157 TIGR01758 MDH_euk_cyt malate d 82.8 7.1 0.00015 41.7 9.4 135 332-476 1-155 (324)
158 PRK14166 bifunctional 5,10-met 82.6 5.4 0.00012 42.2 8.3 85 308-430 135-220 (282)
159 PRK05690 molybdopterin biosynt 82.4 1.7 3.6E-05 44.4 4.4 38 326-374 28-65 (245)
160 PRK12921 2-dehydropantoate 2-r 82.3 3.3 7.2E-05 42.3 6.6 99 332-449 2-106 (305)
161 PRK14170 bifunctional 5,10-met 82.3 5.6 0.00012 42.1 8.3 84 309-430 136-220 (284)
162 PRK14168 bifunctional 5,10-met 82.1 5.8 0.00013 42.3 8.3 89 308-430 139-228 (297)
163 PRK01710 murD UDP-N-acetylmura 82.0 8.4 0.00018 42.5 9.9 116 328-484 12-130 (458)
164 COG0686 Ald Alanine dehydrogen 82.0 2.1 4.7E-05 46.2 5.1 109 328-457 166-290 (371)
165 cd01487 E1_ThiF_like E1_ThiF_l 81.7 1.9 4.1E-05 41.8 4.3 32 332-374 1-32 (174)
166 cd01492 Aos1_SUMO Ubiquitin ac 81.6 1.3 2.7E-05 43.9 3.1 76 326-418 17-96 (197)
167 PRK07066 3-hydroxybutyryl-CoA 81.5 3.7 8E-05 43.9 6.7 108 404-518 104-219 (321)
168 TIGR00507 aroE shikimate 5-deh 81.5 3.4 7.3E-05 42.4 6.3 48 315-374 102-149 (270)
169 cd01483 E1_enzyme_family Super 81.4 2 4.4E-05 39.4 4.2 68 332-416 1-72 (143)
170 PRK05808 3-hydroxybutyryl-CoA 81.4 25 0.00055 36.0 12.6 32 331-374 4-35 (282)
171 PRK07530 3-hydroxybutyryl-CoA 81.3 7.3 0.00016 40.1 8.7 32 331-374 5-36 (292)
172 PRK05442 malate dehydrogenase; 81.3 9.3 0.0002 40.9 9.7 111 331-448 5-133 (326)
173 cd05293 LDH_1 A subgroup of L- 81.0 4.7 0.0001 42.8 7.3 126 331-473 4-147 (312)
174 PRK06522 2-dehydropantoate 2-r 80.8 4.7 0.0001 41.0 7.1 101 332-449 2-104 (304)
175 cd00755 YgdL_like Family of ac 80.4 1.9 4.1E-05 44.0 4.0 37 327-374 8-44 (231)
176 PTZ00345 glycerol-3-phosphate 80.4 6.1 0.00013 43.1 8.0 24 329-352 10-33 (365)
177 PRK09310 aroDE bifunctional 3- 80.3 3.4 7.3E-05 46.3 6.2 48 315-374 317-364 (477)
178 PRK12480 D-lactate dehydrogena 80.2 12 0.00027 39.9 10.2 120 296-446 90-235 (330)
179 TIGR01408 Ube1 ubiquitin-activ 80.1 0.81 1.7E-05 55.8 1.4 43 326-374 415-457 (1008)
180 PRK06487 glycerate dehydrogena 80.0 13 0.00029 39.3 10.3 186 297-526 88-308 (317)
181 TIGR03140 AhpF alkyl hydropero 80.0 5.1 0.00011 44.9 7.5 87 262-351 136-233 (515)
182 TIGR01381 E1_like_apg7 E1-like 79.9 1.7 3.8E-05 50.6 3.9 40 326-376 334-373 (664)
183 PRK15317 alkyl hydroperoxide r 79.8 2.6 5.7E-05 47.1 5.2 85 278-374 148-243 (517)
184 PRK02472 murD UDP-N-acetylmura 79.4 6.2 0.00013 42.8 7.8 35 328-374 3-37 (447)
185 PRK09599 6-phosphogluconate de 79.1 9.4 0.0002 39.7 8.7 93 332-448 2-97 (301)
186 PRK10886 DnaA initiator-associ 79.0 8.5 0.00018 38.4 7.9 91 328-433 39-130 (196)
187 PRK06476 pyrroline-5-carboxyla 78.8 22 0.00047 36.0 11.0 95 332-448 2-96 (258)
188 PRK06141 ornithine cyclodeamin 78.8 14 0.00031 38.9 10.0 105 328-457 123-232 (314)
189 KOG0029 Amine oxidase [Seconda 78.6 1 2.2E-05 50.9 1.5 37 328-367 13-49 (501)
190 PRK14185 bifunctional 5,10-met 78.4 9.4 0.0002 40.7 8.5 87 310-430 137-224 (293)
191 PRK05597 molybdopterin biosynt 78.3 2.5 5.4E-05 45.6 4.3 38 326-374 24-61 (355)
192 PRK07680 late competence prote 78.2 4.4 9.6E-05 41.4 5.9 98 332-449 2-100 (273)
193 PF07992 Pyr_redox_2: Pyridine 78.2 3.3 7.1E-05 39.0 4.6 32 332-375 1-32 (201)
194 KOG0685 Flavin-containing amin 77.9 1.1 2.4E-05 50.4 1.5 26 326-351 17-42 (498)
195 TIGR01327 PGDH D-3-phosphoglyc 77.5 18 0.00038 41.2 10.8 196 296-528 83-303 (525)
196 PRK08268 3-hydroxy-acyl-CoA de 77.3 6.9 0.00015 44.2 7.6 102 409-519 112-222 (507)
197 PRK14180 bifunctional 5,10-met 77.2 10 0.00022 40.2 8.3 85 308-430 136-221 (282)
198 PRK11790 D-3-phosphoglycerate 77.2 47 0.001 36.7 13.8 200 289-529 89-319 (409)
199 cd05294 LDH-like_MDH_nadp A la 77.1 12 0.00026 39.5 8.9 99 332-448 2-124 (309)
200 TIGR03366 HpnZ_proposed putati 76.9 21 0.00045 36.2 10.3 47 315-373 107-153 (280)
201 PRK14173 bifunctional 5,10-met 76.5 11 0.00023 40.1 8.3 83 310-430 135-218 (287)
202 PRK06153 hypothetical protein; 76.5 3.1 6.8E-05 45.8 4.4 160 255-448 111-278 (393)
203 PRK14169 bifunctional 5,10-met 76.3 12 0.00026 39.7 8.5 84 309-430 135-219 (282)
204 PLN03139 formate dehydrogenase 76.2 21 0.00046 39.3 10.7 142 325-499 194-342 (386)
205 PRK14182 bifunctional 5,10-met 75.9 12 0.00027 39.6 8.5 83 310-430 137-220 (282)
206 PRK07231 fabG 3-ketoacyl-(acyl 75.8 6.1 0.00013 38.3 5.9 36 327-374 2-38 (251)
207 PRK07878 molybdopterin biosynt 75.7 2.5 5.5E-05 46.0 3.5 38 326-374 38-75 (392)
208 PRK07679 pyrroline-5-carboxyla 75.7 37 0.0008 34.9 11.8 99 330-448 3-102 (279)
209 PRK00141 murD UDP-N-acetylmura 75.5 12 0.00026 41.7 8.7 91 327-441 12-102 (473)
210 cd05292 LDH_2 A subgroup of L- 75.4 8.3 0.00018 40.6 7.1 126 332-474 2-144 (308)
211 PRK12490 6-phosphogluconate de 75.1 9.3 0.0002 39.8 7.3 94 332-448 2-97 (299)
212 PRK15409 bifunctional glyoxyla 75.0 17 0.00037 38.8 9.4 140 325-499 140-287 (323)
213 PRK09880 L-idonate 5-dehydroge 75.0 29 0.00062 36.2 10.9 45 318-374 159-203 (343)
214 KOG0069 Glyoxylate/hydroxypyru 74.7 10 0.00023 41.1 7.7 100 308-433 120-244 (336)
215 PRK07411 hypothetical protein; 74.5 3.2 6.9E-05 45.3 3.9 38 326-374 34-71 (390)
216 TIGR02279 PaaC-3OHAcCoADH 3-hy 74.5 24 0.00052 40.0 10.9 36 485-520 186-221 (503)
217 COG0345 ProC Pyrroline-5-carbo 74.5 15 0.00032 38.6 8.6 105 331-462 2-107 (266)
218 PRK14181 bifunctional 5,10-met 73.9 16 0.00034 38.9 8.6 89 308-430 131-220 (287)
219 PRK06932 glycerate dehydrogena 73.8 25 0.00054 37.3 10.2 138 326-500 143-289 (314)
220 PRK13581 D-3-phosphoglycerate 73.8 46 0.001 37.9 12.9 195 297-529 86-305 (526)
221 PRK14167 bifunctional 5,10-met 73.8 15 0.00032 39.3 8.4 87 310-430 137-224 (297)
222 PRK06270 homoserine dehydrogen 73.5 26 0.00056 37.6 10.3 105 331-442 3-123 (341)
223 PLN02616 tetrahydrofolate dehy 73.4 13 0.00029 40.7 8.2 83 310-430 211-294 (364)
224 PRK06407 ornithine cyclodeamin 73.1 20 0.00044 37.8 9.3 105 329-458 116-226 (301)
225 PRK02842 light-independent pro 73.1 16 0.00035 40.2 8.9 88 316-418 276-368 (427)
226 PF00070 Pyr_redox: Pyridine n 73.0 7.1 0.00015 32.4 4.8 35 332-378 1-35 (80)
227 PRK08229 2-dehydropantoate 2-r 72.8 7.2 0.00016 40.7 5.9 103 331-450 3-112 (341)
228 cd01484 E1-2_like Ubiquitin ac 72.3 4.8 0.00011 41.2 4.3 32 332-374 1-32 (234)
229 PLN02527 aspartate carbamoyltr 72.2 1.2E+02 0.0026 32.4 14.8 131 269-421 93-229 (306)
230 PRK14186 bifunctional 5,10-met 72.2 17 0.00036 38.9 8.4 83 310-430 138-221 (297)
231 PLN02602 lactate dehydrogenase 72.2 11 0.00025 40.7 7.3 123 331-472 38-180 (350)
232 cd01491 Ube1_repeat1 Ubiquitin 72.0 3.6 7.8E-05 43.4 3.4 38 326-374 15-52 (286)
233 COG0039 Mdh Malate/lactate deh 71.7 8 0.00017 41.5 6.0 108 331-461 1-126 (313)
234 TIGR02622 CDP_4_6_dhtase CDP-g 71.4 10 0.00022 39.6 6.7 102 328-445 2-127 (349)
235 PRK07340 ornithine cyclodeamin 71.1 29 0.00062 36.6 9.9 104 328-457 123-230 (304)
236 PF02737 3HCDH_N: 3-hydroxyacy 70.8 6 0.00013 38.5 4.4 111 332-461 1-125 (180)
237 cd01486 Apg7 Apg7 is an E1-lik 70.7 5.4 0.00012 42.8 4.4 32 332-374 1-32 (307)
238 PLN02520 bifunctional 3-dehydr 70.5 9.1 0.0002 43.6 6.4 38 325-374 374-411 (529)
239 PF13738 Pyr_redox_3: Pyridine 70.3 5.1 0.00011 37.9 3.8 30 334-374 1-30 (203)
240 PLN02897 tetrahydrofolate dehy 70.3 17 0.00037 39.7 8.0 83 310-430 194-277 (345)
241 KOG2337 Ubiquitin activating E 70.2 4.9 0.00011 45.9 4.1 165 328-505 338-522 (669)
242 TIGR00873 gnd 6-phosphoglucona 70.1 11 0.00023 42.4 6.8 95 332-446 1-99 (467)
243 PRK12439 NAD(P)H-dependent gly 70.0 10 0.00022 40.4 6.4 21 331-351 8-28 (341)
244 COG0190 FolD 5,10-methylene-te 69.9 18 0.00038 38.5 7.9 119 274-430 90-219 (283)
245 TIGR02371 ala_DH_arch alanine 69.8 28 0.00061 37.0 9.6 104 329-457 127-235 (325)
246 cd01488 Uba3_RUB Ubiquitin act 69.6 5.7 0.00012 42.1 4.3 32 332-374 1-32 (291)
247 PTZ00142 6-phosphogluconate de 69.2 12 0.00026 42.1 6.9 97 332-448 3-104 (470)
248 PF01494 FAD_binding_3: FAD bi 69.1 6.2 0.00014 39.8 4.3 34 331-376 2-35 (356)
249 PLN02545 3-hydroxybutyryl-CoA 69.0 24 0.00053 36.4 8.7 32 331-374 5-36 (295)
250 PF02423 OCD_Mu_crystall: Orni 68.9 8.2 0.00018 40.8 5.3 103 330-457 128-237 (313)
251 PRK09754 phenylpropionate diox 68.8 7 0.00015 41.9 4.9 36 329-374 2-37 (396)
252 TIGR01771 L-LDH-NAD L-lactate 68.5 11 0.00023 39.8 6.0 123 335-472 1-139 (299)
253 cd08237 ribitol-5-phosphate_DH 68.5 79 0.0017 33.1 12.5 35 329-373 163-197 (341)
254 PLN02819 lysine-ketoglutarate 68.4 25 0.00054 43.5 9.8 102 329-435 202-327 (1042)
255 PRK14620 NAD(P)H-dependent gly 67.9 13 0.00028 38.9 6.5 31 332-374 2-32 (326)
256 COG1052 LdhA Lactate dehydroge 67.9 24 0.00053 37.9 8.6 94 323-446 139-237 (324)
257 KOG1495 Lactate dehydrogenase 67.9 14 0.0003 39.6 6.5 130 326-478 16-169 (332)
258 PF03447 NAD_binding_3: Homose 67.3 8.5 0.00018 34.2 4.3 88 337-442 1-88 (117)
259 PRK08618 ornithine cyclodeamin 67.2 47 0.001 35.3 10.5 105 329-460 126-236 (325)
260 PRK07502 cyclohexadienyl dehyd 66.9 19 0.00042 37.4 7.5 94 331-446 7-101 (307)
261 PRK13938 phosphoheptose isomer 66.5 21 0.00046 35.6 7.3 105 329-448 44-151 (196)
262 COG1179 Dinucleotide-utilizing 66.1 5.2 0.00011 41.8 3.1 42 327-379 27-68 (263)
263 cd01489 Uba2_SUMO Ubiquitin ac 65.8 8.2 0.00018 41.3 4.6 32 332-374 1-32 (312)
264 TIGR01214 rmlD dTDP-4-dehydror 65.2 25 0.00055 35.1 7.7 60 332-421 1-61 (287)
265 COG0476 ThiF Dinucleotide-util 64.9 8.7 0.00019 39.0 4.4 39 325-374 25-63 (254)
266 COG1250 FadB 3-hydroxyacyl-CoA 64.9 1.6E+02 0.0035 31.7 13.9 140 402-560 101-249 (307)
267 PRK00536 speE spermidine synth 64.7 9.7 0.00021 39.8 4.8 101 331-474 74-175 (262)
268 cd00300 LDH_like L-lactate deh 64.2 19 0.00042 37.7 6.9 123 333-472 1-141 (300)
269 PRK12429 3-hydroxybutyrate deh 63.8 25 0.00055 34.2 7.3 35 328-374 2-37 (258)
270 PRK11883 protoporphyrinogen ox 63.8 4.6 0.0001 43.1 2.3 22 331-352 1-22 (451)
271 COG0499 SAM1 S-adenosylhomocys 63.3 31 0.00067 38.2 8.3 124 304-462 186-315 (420)
272 TIGR01292 TRX_reduct thioredox 63.1 8.9 0.00019 38.3 4.1 31 332-374 2-32 (300)
273 PRK06719 precorrin-2 dehydroge 62.7 11 0.00023 36.1 4.3 36 327-374 10-45 (157)
274 PLN02688 pyrroline-5-carboxyla 62.5 46 0.00099 33.6 9.1 94 332-448 2-98 (266)
275 PRK07877 hypothetical protein; 62.4 15 0.00034 43.5 6.4 101 326-445 103-229 (722)
276 PRK06718 precorrin-2 dehydroge 62.2 11 0.00024 37.5 4.4 35 327-373 7-41 (202)
277 PRK15181 Vi polysaccharide bio 62.0 32 0.0007 36.1 8.2 105 324-445 9-141 (348)
278 PF03446 NAD_binding_2: NAD bi 61.8 12 0.00025 35.5 4.4 103 331-460 2-107 (163)
279 PRK01713 ornithine carbamoyltr 61.8 54 0.0012 35.4 9.9 137 262-418 92-233 (334)
280 COG5322 Predicted dehydrogenas 61.6 12 0.00026 39.9 4.8 46 306-351 143-189 (351)
281 PRK12409 D-amino acid dehydrog 61.5 10 0.00022 40.5 4.4 33 331-375 2-34 (410)
282 COG2423 Predicted ornithine cy 61.4 36 0.00078 36.9 8.4 122 313-460 115-241 (330)
283 PF05834 Lycopene_cycl: Lycope 61.2 10 0.00022 40.7 4.3 35 333-377 2-36 (374)
284 PRK06046 alanine dehydrogenase 60.4 49 0.0011 35.1 9.2 103 329-457 128-236 (326)
285 TIGR01470 cysG_Nterm siroheme 60.2 12 0.00026 37.3 4.4 36 327-374 6-41 (205)
286 PRK06823 ornithine cyclodeamin 59.9 61 0.0013 34.6 9.8 105 329-458 127-236 (315)
287 PLN00112 malate dehydrogenase 59.7 33 0.00071 38.6 8.0 111 331-448 101-229 (444)
288 TIGR03169 Nterm_to_SelD pyridi 59.3 6.1 0.00013 41.4 2.2 36 332-376 1-36 (364)
289 TIGR02028 ChlP geranylgeranyl 59.1 11 0.00023 40.8 4.1 20 332-351 2-21 (398)
290 KOG2304 3-hydroxyacyl-CoA dehy 58.5 8.9 0.00019 40.1 3.1 32 331-374 12-43 (298)
291 TIGR03376 glycerol3P_DH glycer 58.5 18 0.00039 39.1 5.6 20 332-351 1-20 (342)
292 PRK05866 short chain dehydroge 58.1 32 0.00069 35.4 7.2 39 325-374 35-73 (293)
293 PF13454 NAD_binding_9: FAD-NA 57.7 10 0.00023 35.6 3.3 36 334-376 1-36 (156)
294 TIGR02023 BchP-ChlP geranylger 57.4 12 0.00027 39.8 4.1 20 332-351 2-21 (388)
295 PRK06249 2-dehydropantoate 2-r 57.2 29 0.00063 36.3 6.8 105 328-449 3-110 (313)
296 COG0240 GpsA Glycerol-3-phosph 56.5 21 0.00046 38.7 5.7 87 331-433 2-92 (329)
297 PRK12828 short chain dehydroge 56.3 19 0.00041 34.5 4.8 36 327-374 4-40 (239)
298 PRK13512 coenzyme A disulfide 56.2 11 0.00024 41.2 3.6 33 332-374 3-35 (438)
299 PRK06184 hypothetical protein; 55.9 14 0.00031 40.9 4.5 34 329-374 2-35 (502)
300 PF01266 DAO: FAD dependent ox 55.8 17 0.00037 36.7 4.7 33 332-376 1-33 (358)
301 TIGR00465 ilvC ketol-acid redu 55.8 38 0.00082 36.2 7.4 24 328-351 1-24 (314)
302 PRK06847 hypothetical protein; 55.7 15 0.00033 38.4 4.4 22 330-351 4-25 (375)
303 PRK11199 tyrA bifunctional cho 55.7 52 0.0011 35.8 8.6 33 330-374 98-131 (374)
304 PRK01438 murD UDP-N-acetylmura 55.7 17 0.00038 40.0 5.1 29 323-351 9-37 (480)
305 TIGR03026 NDP-sugDHase nucleot 55.4 37 0.00079 37.0 7.4 31 332-374 2-32 (411)
306 PRK12771 putative glutamate sy 55.4 22 0.00047 40.4 5.9 36 327-374 134-169 (564)
307 TIGR01181 dTDP_gluc_dehyt dTDP 55.4 55 0.0012 32.7 8.2 78 332-421 1-84 (317)
308 PRK06928 pyrroline-5-carboxyla 55.4 44 0.00095 34.5 7.7 98 331-448 2-101 (277)
309 TIGR01283 nifE nitrogenase mol 55.3 26 0.00057 38.9 6.4 84 318-417 314-402 (456)
310 PLN02268 probable polyamine ox 55.2 6.4 0.00014 42.5 1.6 40 332-376 2-47 (435)
311 PRK07236 hypothetical protein; 55.2 17 0.00037 38.6 4.7 25 328-352 4-28 (386)
312 cd05006 SIS_GmhA Phosphoheptos 54.9 69 0.0015 30.6 8.4 22 410-433 101-122 (177)
313 cd01968 Nitrogenase_NifE_I Nit 54.5 17 0.00037 39.7 4.7 86 318-419 275-365 (410)
314 PLN02240 UDP-glucose 4-epimera 54.3 26 0.00057 36.2 5.8 107 327-445 2-132 (352)
315 PRK07233 hypothetical protein; 54.2 14 0.0003 39.2 3.9 31 332-374 1-31 (434)
316 PRK07819 3-hydroxybutyryl-CoA 54.2 16 0.00035 38.1 4.3 22 331-352 6-27 (286)
317 PRK12570 N-acetylmuramic acid- 54.1 26 0.00057 37.0 5.9 37 410-448 127-165 (296)
318 TIGR01316 gltA glutamate synth 54.1 18 0.00039 39.9 4.9 36 327-374 130-165 (449)
319 KOG0743 AAA+-type ATPase [Post 54.0 20 0.00044 40.4 5.1 104 198-338 241-345 (457)
320 PRK12829 short chain dehydroge 53.8 42 0.00091 32.9 6.9 37 327-374 8-44 (264)
321 cd05007 SIS_Etherase N-acetylm 53.7 24 0.00051 36.5 5.4 38 409-448 117-156 (257)
322 PRK05479 ketol-acid reductoiso 53.7 44 0.00095 36.2 7.5 25 327-351 14-38 (330)
323 TIGR02440 FadJ fatty oxidation 53.7 1.7E+02 0.0036 34.7 12.9 155 403-579 404-567 (699)
324 PRK05993 short chain dehydroge 53.5 28 0.00061 35.1 5.8 33 330-374 4-37 (277)
325 PRK09564 coenzyme A disulfide 53.5 19 0.00041 38.9 4.9 37 331-377 1-37 (444)
326 PRK03803 murD UDP-N-acetylmura 53.5 57 0.0012 35.7 8.5 115 329-484 5-121 (448)
327 PRK11154 fadJ multifunctional 53.4 1.5E+02 0.0033 35.1 12.4 103 407-518 413-523 (708)
328 PF03435 Saccharop_dh: Sacchar 53.3 6.4 0.00014 42.1 1.2 88 333-442 1-96 (386)
329 PRK08163 salicylate hydroxylas 53.2 17 0.00036 38.4 4.3 22 330-351 4-25 (396)
330 TIGR01505 tartro_sem_red 2-hyd 53.0 40 0.00087 34.7 6.9 31 332-374 1-31 (291)
331 cd01493 APPBP1_RUB Ubiquitin a 52.9 15 0.00033 40.8 4.1 38 326-374 16-53 (425)
332 TIGR00441 gmhA phosphoheptose 52.5 85 0.0018 29.6 8.5 37 410-448 79-117 (154)
333 PRK09126 hypothetical protein; 52.4 17 0.00037 38.3 4.2 22 330-351 3-24 (392)
334 PRK03369 murD UDP-N-acetylmura 52.3 66 0.0014 36.1 8.9 89 328-441 10-98 (488)
335 COG2072 TrkA Predicted flavopr 52.0 19 0.00042 39.9 4.7 36 329-375 7-42 (443)
336 PRK13394 3-hydroxybutyrate deh 51.8 45 0.00098 32.6 6.8 36 327-374 4-40 (262)
337 PRK11730 fadB multifunctional 51.8 53 0.0012 38.9 8.5 107 404-519 413-527 (715)
338 PRK12810 gltD glutamate syntha 51.6 20 0.00043 39.7 4.7 34 329-374 142-175 (471)
339 PTZ00245 ubiquitin activating 51.6 15 0.00031 39.1 3.4 73 326-416 22-98 (287)
340 PRK04176 ribulose-1,5-biphosph 51.6 18 0.00039 37.2 4.1 35 329-375 24-58 (257)
341 PRK06475 salicylate hydroxylas 51.5 17 0.00036 38.9 4.0 21 331-351 3-23 (400)
342 PLN02695 GDP-D-mannose-3',5'-e 51.4 46 0.001 35.6 7.3 97 329-445 20-137 (370)
343 PRK07364 2-octaprenyl-6-methox 51.2 16 0.00035 38.8 3.8 22 330-351 18-39 (415)
344 PRK05749 3-deoxy-D-manno-octul 51.0 46 0.00099 35.7 7.2 37 401-442 312-349 (425)
345 PRK06392 homoserine dehydrogen 51.0 60 0.0013 35.0 8.0 83 332-419 2-90 (326)
346 PRK12769 putative oxidoreducta 51.0 19 0.00041 41.8 4.6 35 328-374 325-359 (654)
347 COG0644 FixC Dehydrogenases (f 50.8 19 0.00042 38.7 4.4 35 331-377 4-38 (396)
348 PLN02172 flavin-containing mon 50.7 21 0.00045 39.9 4.7 25 327-351 7-31 (461)
349 PRK04965 NADH:flavorubredoxin 50.7 18 0.0004 38.4 4.1 36 331-376 3-38 (377)
350 PRK05441 murQ N-acetylmuramic 50.5 31 0.00066 36.6 5.7 39 409-449 130-170 (299)
351 PF06690 DUF1188: Protein of u 50.5 30 0.00064 36.2 5.4 144 324-522 38-186 (252)
352 COG3288 PntA NAD/NADP transhyd 50.2 23 0.0005 38.5 4.7 51 401-456 237-293 (356)
353 PRK06138 short chain dehydroge 50.1 34 0.00074 33.2 5.6 36 327-374 2-38 (252)
354 PRK00683 murD UDP-N-acetylmura 50.0 73 0.0016 34.7 8.7 113 330-484 3-115 (418)
355 KOG2018 Predicted dinucleotide 49.9 19 0.00041 39.3 4.0 40 326-376 70-109 (430)
356 TIGR01082 murC UDP-N-acetylmur 49.6 33 0.00071 37.7 6.0 105 332-472 1-107 (448)
357 PRK12266 glpD glycerol-3-phosp 49.1 19 0.00042 40.4 4.2 33 331-375 7-39 (508)
358 cd01490 Ube1_repeat2 Ubiquitin 49.0 20 0.00044 40.2 4.3 37 332-374 1-37 (435)
359 PF13450 NAD_binding_8: NAD(P) 49.0 25 0.00054 28.9 3.8 30 335-376 1-30 (68)
360 TIGR01790 carotene-cycl lycope 48.8 20 0.00043 37.9 4.0 31 333-375 2-32 (388)
361 PRK09186 flagellin modificatio 48.6 40 0.00087 32.9 5.9 23 328-350 2-25 (256)
362 PRK12779 putative bifunctional 48.6 22 0.00048 43.4 4.8 40 328-379 304-347 (944)
363 TIGR03693 ocin_ThiF_like putat 48.5 79 0.0017 37.3 8.9 64 290-376 101-164 (637)
364 PRK07251 pyridine nucleotide-d 48.4 22 0.00048 38.7 4.4 34 330-375 3-36 (438)
365 PRK07523 gluconate 5-dehydroge 48.3 48 0.0011 32.6 6.4 36 327-374 7-43 (255)
366 PRK06753 hypothetical protein; 48.2 22 0.00047 37.3 4.2 20 332-351 2-21 (373)
367 TIGR00031 UDP-GALP_mutase UDP- 48.2 22 0.00047 38.9 4.3 31 332-374 3-33 (377)
368 PTZ00318 NADH dehydrogenase-li 48.0 15 0.00032 40.0 3.0 36 327-374 7-42 (424)
369 KOG2012 Ubiquitin activating e 48.0 11 0.00023 45.4 2.0 116 326-468 426-552 (1013)
370 PRK06416 dihydrolipoamide dehy 47.9 21 0.00046 39.0 4.2 33 331-375 5-37 (462)
371 TIGR01179 galE UDP-glucose-4-e 47.9 75 0.0016 31.9 7.8 97 332-443 1-119 (328)
372 TIGR02032 GG-red-SF geranylger 47.8 22 0.00048 35.1 4.0 33 332-376 2-34 (295)
373 PLN02676 polyamine oxidase 47.7 48 0.001 37.2 7.0 24 329-352 25-48 (487)
374 PLN00093 geranylgeranyl diphos 47.7 21 0.00046 39.6 4.2 21 331-351 40-60 (450)
375 PRK07045 putative monooxygenas 47.7 23 0.0005 37.5 4.3 21 331-351 6-26 (388)
376 PF01408 GFO_IDH_MocA: Oxidore 47.5 30 0.00065 30.1 4.4 90 332-442 2-91 (120)
377 PRK09987 dTDP-4-dehydrorhamnos 47.3 69 0.0015 33.0 7.6 86 332-445 2-104 (299)
378 PRK11259 solA N-methyltryptoph 47.3 24 0.00051 36.9 4.3 34 330-375 3-36 (376)
379 PRK04663 murD UDP-N-acetylmura 47.2 71 0.0015 35.0 8.1 117 328-484 4-121 (438)
380 TIGR03088 stp2 sugar transfera 47.1 1.3E+02 0.0029 31.1 9.7 37 401-442 265-301 (374)
381 PRK06182 short chain dehydroge 47.0 41 0.00089 33.6 5.8 74 329-421 2-85 (273)
382 COG1086 Predicted nucleoside-d 47.0 32 0.00069 40.0 5.4 76 326-419 246-334 (588)
383 PRK07424 bifunctional sterol d 46.9 28 0.0006 38.5 4.9 56 293-374 156-211 (406)
384 PRK13403 ketol-acid reductoiso 46.7 33 0.00073 37.3 5.3 65 326-415 12-76 (335)
385 cd01979 Pchlide_reductase_N Pc 46.7 43 0.00093 36.5 6.2 34 318-351 264-297 (396)
386 PRK10892 D-arabinose 5-phospha 46.5 1E+02 0.0022 32.2 8.9 83 331-448 48-132 (326)
387 TIGR01373 soxB sarcosine oxida 46.5 29 0.00064 37.0 4.9 38 329-376 29-66 (407)
388 PRK13937 phosphoheptose isomer 46.5 74 0.0016 31.1 7.3 37 410-448 106-144 (188)
389 PRK07608 ubiquinone biosynthes 46.5 22 0.00048 37.4 3.9 32 331-374 6-37 (388)
390 TIGR01377 soxA_mon sarcosine o 46.3 24 0.00053 36.9 4.2 33 332-376 2-34 (380)
391 cd04951 GT1_WbdM_like This fam 46.3 1.7E+02 0.0037 29.4 10.1 38 400-442 254-291 (360)
392 TIGR03736 PRTRC_ThiF PRTRC sys 46.1 30 0.00064 35.9 4.7 47 329-376 10-56 (244)
393 PRK11559 garR tartronate semia 46.0 75 0.0016 32.6 7.6 32 331-374 3-34 (296)
394 PRK12770 putative glutamate sy 45.8 32 0.00069 36.4 5.0 35 328-374 16-50 (352)
395 PRK11749 dihydropyrimidine deh 45.7 27 0.00058 38.4 4.5 35 328-374 138-172 (457)
396 PRK12491 pyrroline-5-carboxyla 45.5 43 0.00094 34.7 5.8 35 331-373 3-37 (272)
397 PRK07589 ornithine cyclodeamin 45.5 2.1E+02 0.0046 31.1 11.2 104 330-458 129-239 (346)
398 PRK00048 dihydrodipicolinate r 45.5 1.1E+02 0.0024 31.4 8.7 88 331-443 2-90 (257)
399 PRK14852 hypothetical protein; 45.4 21 0.00045 43.9 3.8 38 326-374 328-365 (989)
400 PLN02463 lycopene beta cyclase 45.1 24 0.00052 39.3 4.1 32 331-374 29-60 (447)
401 PRK08219 short chain dehydroge 45.1 83 0.0018 29.9 7.3 71 331-421 4-82 (227)
402 TIGR00274 N-acetylmuramic acid 45.1 36 0.00078 36.0 5.2 38 410-449 126-165 (291)
403 PRK12416 protoporphyrinogen ox 45.0 14 0.0003 40.3 2.2 47 331-377 2-55 (463)
404 PRK05732 2-octaprenyl-6-methox 45.0 29 0.00063 36.5 4.5 36 330-374 3-38 (395)
405 PRK07334 threonine dehydratase 44.8 4.1E+02 0.0089 29.1 13.4 196 90-375 8-208 (403)
406 PRK10157 putative oxidoreducta 44.8 24 0.00053 38.6 4.0 21 331-351 6-26 (428)
407 COG0654 UbiH 2-polyprenyl-6-me 44.7 27 0.00059 37.3 4.3 33 330-374 2-34 (387)
408 COG0565 LasT rRNA methylase [T 44.7 1.2E+02 0.0026 31.8 8.7 74 329-422 3-84 (242)
409 PRK09466 metL bifunctional asp 44.6 61 0.0013 39.1 7.6 107 329-442 457-570 (810)
410 PRK06171 sorbitol-6-phosphate 44.4 90 0.002 30.9 7.7 76 327-420 6-87 (266)
411 PF01946 Thi4: Thi4 family; PD 44.4 33 0.00072 35.5 4.6 35 329-375 16-50 (230)
412 PRK12831 putative oxidoreducta 44.1 28 0.00062 38.7 4.5 35 328-374 138-172 (464)
413 PRK11101 glpA sn-glycerol-3-ph 44.1 27 0.00058 39.7 4.3 33 330-374 6-38 (546)
414 PRK08773 2-octaprenyl-3-methyl 44.0 23 0.00049 37.6 3.6 34 330-375 6-39 (392)
415 TIGR00292 thiazole biosynthesi 44.0 27 0.00059 35.9 4.0 37 329-377 20-56 (254)
416 PRK01747 mnmC bifunctional tRN 44.0 28 0.0006 40.3 4.5 33 331-375 261-293 (662)
417 TIGR01984 UbiH 2-polyprenyl-6- 44.0 23 0.00049 37.2 3.5 20 333-352 2-21 (382)
418 PLN02427 UDP-apiose/xylose syn 44.0 71 0.0015 34.0 7.3 83 321-420 5-96 (386)
419 PRK00414 gmhA phosphoheptose i 44.0 1.1E+02 0.0023 30.3 8.0 36 410-447 111-148 (192)
420 PRK13369 glycerol-3-phosphate 44.0 25 0.00054 39.3 4.1 33 331-375 7-39 (502)
421 PRK12778 putative bifunctional 44.0 32 0.00069 40.6 5.1 36 327-374 428-463 (752)
422 PRK06124 gluconate 5-dehydroge 43.8 89 0.0019 30.7 7.5 39 325-374 6-44 (256)
423 PRK09853 putative selenate red 43.8 27 0.00059 43.1 4.6 35 328-374 537-571 (1019)
424 TIGR02053 MerA mercuric reduct 43.8 27 0.00058 38.3 4.2 30 333-374 3-32 (463)
425 PRK08849 2-octaprenyl-3-methyl 43.6 30 0.00065 36.8 4.4 32 331-374 4-35 (384)
426 COG1063 Tdh Threonine dehydrog 43.6 42 0.00091 35.9 5.5 99 304-420 143-248 (350)
427 cd01974 Nitrogenase_MoFe_beta 43.4 24 0.00052 39.0 3.7 103 319-448 292-405 (435)
428 cd00529 RuvC_resolvase Hollida 43.4 1.6E+02 0.0034 28.1 8.8 112 191-343 1-118 (154)
429 PRK06841 short chain dehydroge 43.3 39 0.00085 33.0 4.9 36 327-374 12-48 (255)
430 PF04320 DUF469: Protein with 43.2 21 0.00045 32.6 2.7 32 252-283 27-61 (101)
431 PRK12814 putative NADPH-depend 43.2 31 0.00067 40.2 4.8 34 329-374 192-225 (652)
432 PRK07067 sorbitol dehydrogenas 43.2 24 0.00052 34.8 3.4 36 327-374 3-39 (257)
433 PRK12826 3-ketoacyl-(acyl-carr 43.1 67 0.0015 31.0 6.4 36 327-374 3-39 (251)
434 PRK08244 hypothetical protein; 43.1 28 0.00061 38.4 4.2 21 331-351 3-23 (493)
435 PRK07588 hypothetical protein; 43.0 29 0.00063 36.8 4.2 20 332-351 2-21 (391)
436 PRK00711 D-amino acid dehydrog 42.9 29 0.00063 36.9 4.2 31 332-374 2-32 (416)
437 PRK10262 thioredoxin reductase 42.8 25 0.00053 36.4 3.5 24 328-351 4-27 (321)
438 PLN02172 flavin-containing mon 42.8 30 0.00064 38.7 4.4 36 328-375 202-237 (461)
439 COG0562 Glf UDP-galactopyranos 42.7 28 0.00061 38.1 3.9 34 332-377 3-36 (374)
440 TIGR01789 lycopene_cycl lycope 42.7 36 0.00077 36.7 4.8 35 333-377 2-36 (370)
441 PRK14806 bifunctional cyclohex 42.7 60 0.0013 38.0 7.0 93 331-445 4-97 (735)
442 TIGR01350 lipoamide_DH dihydro 42.6 29 0.00063 37.8 4.2 30 332-373 3-32 (461)
443 PRK06185 hypothetical protein; 42.5 29 0.00064 36.8 4.1 34 330-375 6-39 (407)
444 PRK05976 dihydrolipoamide dehy 42.4 31 0.00067 38.1 4.4 33 330-374 4-36 (472)
445 PRK08020 ubiF 2-octaprenyl-3-m 42.4 27 0.00058 36.9 3.8 33 330-374 5-37 (391)
446 PLN02653 GDP-mannose 4,6-dehyd 42.4 94 0.002 32.2 7.7 82 327-420 3-93 (340)
447 PLN02568 polyamine oxidase 42.4 16 0.00035 41.6 2.3 24 329-352 4-27 (539)
448 PRK07478 short chain dehydroge 42.4 64 0.0014 31.7 6.2 36 327-374 3-39 (254)
449 TIGR03589 PseB UDP-N-acetylglu 42.4 59 0.0013 33.9 6.3 106 328-445 2-125 (324)
450 PRK08010 pyridine nucleotide-d 42.3 28 0.0006 37.9 4.0 32 331-374 4-35 (441)
451 TIGR01988 Ubi-OHases Ubiquinon 42.0 27 0.00059 36.3 3.8 31 333-375 2-32 (385)
452 PLN02350 phosphogluconate dehy 42.0 66 0.0014 36.7 7.0 98 331-448 7-110 (493)
453 PF02558 ApbA: Ketopantoate re 42.0 36 0.00079 31.1 4.2 31 333-375 1-31 (151)
454 PRK08013 oxidoreductase; Provi 42.0 31 0.00067 37.0 4.2 33 330-374 3-35 (400)
455 PRK14694 putative mercuric red 42.0 34 0.00073 37.8 4.6 34 329-374 5-38 (468)
456 PRK06912 acoL dihydrolipoamide 41.9 31 0.00067 37.9 4.3 31 332-374 2-32 (458)
457 PRK05714 2-octaprenyl-3-methyl 41.8 25 0.00054 37.5 3.5 32 331-374 3-34 (405)
458 KOG2013 SMT3/SUMO-activating c 41.8 27 0.00059 39.9 3.8 74 326-415 8-84 (603)
459 COG0673 MviM Predicted dehydro 41.8 63 0.0014 33.3 6.3 94 330-442 3-102 (342)
460 COG0771 MurD UDP-N-acetylmuram 41.8 1.5E+02 0.0033 33.6 9.6 36 327-374 4-39 (448)
461 COG1087 GalE UDP-glucose 4-epi 41.7 60 0.0013 35.3 6.2 99 332-445 2-118 (329)
462 PLN02657 3,8-divinyl protochlo 41.7 1.2E+02 0.0027 32.8 8.8 109 323-443 53-180 (390)
463 PRK08294 phenol 2-monooxygenas 41.7 27 0.00058 40.6 3.9 35 329-374 31-65 (634)
464 PRK08243 4-hydroxybenzoate 3-m 41.5 33 0.00072 36.6 4.4 22 330-351 2-23 (392)
465 PF13407 Peripla_BP_4: Peripla 41.5 84 0.0018 30.6 6.9 144 152-326 52-206 (257)
466 PRK13301 putative L-aspartate 41.4 38 0.00083 35.8 4.7 117 331-471 3-122 (267)
467 cd01833 XynB_like SGNH_hydrola 41.4 1.4E+02 0.0029 27.2 7.8 68 198-281 18-85 (157)
468 TIGR03364 HpnW_proposed FAD de 41.2 31 0.00067 36.1 4.0 31 332-374 2-32 (365)
469 KOG3851 Sulfide:quinone oxidor 41.2 20 0.00043 39.4 2.5 138 329-473 38-230 (446)
470 PRK03515 ornithine carbamoyltr 41.2 1.9E+02 0.0042 31.4 10.0 137 262-418 91-233 (336)
471 PRK06292 dihydrolipoamide dehy 41.0 34 0.00074 37.3 4.5 33 330-374 3-35 (460)
472 PF12831 FAD_oxidored: FAD dep 40.8 34 0.00074 37.5 4.4 33 333-377 2-34 (428)
473 PRK07890 short chain dehydroge 40.8 66 0.0014 31.5 6.0 36 328-374 3-38 (258)
474 COG3349 Uncharacterized conser 40.7 21 0.00046 40.6 2.8 44 331-379 1-51 (485)
475 COG1252 Ndh NADH dehydrogenase 40.5 28 0.0006 38.8 3.7 35 330-374 3-37 (405)
476 PLN02366 spermidine synthase 40.4 61 0.0013 34.6 6.1 123 298-433 59-193 (308)
477 PRK07538 hypothetical protein; 40.4 33 0.00071 36.9 4.1 20 332-351 2-21 (413)
478 PF12227 DUF3603: Protein of u 40.3 12 0.00026 38.0 0.7 26 183-211 51-76 (214)
479 TIGR01317 GOGAT_sm_gam glutama 40.3 36 0.00077 38.1 4.5 34 329-374 142-175 (485)
480 cd01976 Nitrogenase_MoFe_alpha 40.1 62 0.0013 35.7 6.3 87 317-419 287-378 (421)
481 TIGR01408 Ube1 ubiquitin-activ 39.9 24 0.00053 43.4 3.4 39 326-375 20-58 (1008)
482 PRK11728 hydroxyglutarate oxid 39.8 32 0.0007 36.7 3.9 34 331-374 3-36 (393)
483 PRK04690 murD UDP-N-acetylmura 39.7 36 0.00077 37.9 4.4 24 328-351 6-29 (468)
484 cd05188 MDR Medium chain reduc 39.6 71 0.0015 30.8 6.0 45 318-374 123-167 (271)
485 PRK08850 2-octaprenyl-6-methox 39.4 36 0.00078 36.4 4.2 33 330-374 4-36 (405)
486 PRK06834 hypothetical protein; 39.3 38 0.00083 37.9 4.6 35 329-375 2-36 (488)
487 PRK05868 hypothetical protein; 39.1 37 0.00081 36.2 4.3 21 331-351 2-22 (372)
488 COG1748 LYS9 Saccharopine dehy 39.1 57 0.0012 36.2 5.7 85 331-434 2-90 (389)
489 TIGR03143 AhpF_homolog putativ 38.9 34 0.00074 38.9 4.2 32 332-375 6-37 (555)
490 TIGR03315 Se_ygfK putative sel 38.9 34 0.00074 42.3 4.4 34 329-374 536-569 (1012)
491 CHL00076 chlB photochlorophyll 38.8 43 0.00093 38.1 4.9 79 326-418 301-382 (513)
492 TIGR01757 Malate-DH_plant mala 38.7 97 0.0021 34.3 7.4 108 330-448 44-173 (387)
493 PRK12391 tryptophan synthase s 38.7 3.4E+02 0.0074 30.4 11.8 41 329-375 254-294 (427)
494 PRK07333 2-octaprenyl-6-methox 38.4 30 0.00066 36.5 3.5 20 332-351 3-22 (403)
495 PRK09897 hypothetical protein; 38.3 40 0.00087 38.7 4.6 33 332-374 3-35 (534)
496 PRK12809 putative oxidoreducta 38.3 43 0.00092 38.9 4.9 35 329-375 309-343 (639)
497 COG0665 DadA Glycine/D-amino a 38.3 44 0.00096 34.9 4.6 37 329-377 3-39 (387)
498 PRK06200 2,3-dihydroxy-2,3-dih 38.3 32 0.0007 34.1 3.4 37 327-374 3-39 (263)
499 PF13580 SIS_2: SIS domain; PD 38.2 25 0.00054 32.6 2.5 30 402-433 95-124 (138)
500 PRK09242 tropinone reductase; 38.1 1.2E+02 0.0027 29.7 7.5 37 327-374 6-42 (257)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.6e-223 Score=1760.49 Aligned_cols=559 Identities=65% Similarity=1.046 Sum_probs=545.9
Q ss_pred cccCcccccccccccc-ccccccccccccCcCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhH
Q 007782 30 VYGEDRATEDQLVTPW-TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQK 108 (590)
Q Consensus 30 ~~~~~~~~~~~~~~~~-~~~~~~G~~ll~~p~~NKGtaFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~K 108 (590)
.+++...+..+...+| +.++++|+++|+||++|||+|||.+||++|||||||||+|+|+|+|++||+.+|+++++||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~k 87 (582)
T KOG1257|consen 8 VYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAK 87 (582)
T ss_pred cccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHH
Confidence 3344444434444555 667889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh-cccccchhhhcccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEe
Q 007782 109 YVAMMEL-ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVT 187 (590)
Q Consensus 109 y~~L~~L-~~Ne~LFy~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVT 187 (590)
|+||++| +|||+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||
T Consensus 88 y~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVT 167 (582)
T KOG1257|consen 88 YIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVT 167 (582)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEe
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeecCCCCCCCcccchhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHH
Q 007782 188 DGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSA 267 (590)
Q Consensus 188 DG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~a 267 (590)
||||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||||+|+||+|++|++||+|+||||+|
T Consensus 168 DGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~A 247 (582)
T KOG1257|consen 168 DGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEA 247 (582)
T ss_pred CCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHH
Q 007782 268 VKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAE 347 (590)
Q Consensus 268 v~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ 347 (590)
|+++|||++|||||||+++|||++|+|||++||||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+
T Consensus 248 v~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~ 327 (582)
T KOG1257|consen 248 VVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIAN 327 (582)
T ss_pred HHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHH
Q 007782 348 LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKE 427 (590)
Q Consensus 348 li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~e 427 (590)
||+.+|+++ |+|+|||+++|||||++|||+++|+.+++++|++|||+++++++|+|||+.||||||||+|++||+||||
T Consensus 328 l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Ftee 406 (582)
T KOG1257|consen 328 LIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEE 406 (582)
T ss_pred HHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHH
Confidence 999999996 9999999999999999999999998789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCC
Q 007782 428 VIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGA 507 (590)
Q Consensus 428 vv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a 507 (590)
|||+|+++|||||||||||||+++||||||||+||+|||||||||||+||+|+||+|+||||||+|+|||||||+++|++
T Consensus 407 vl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~ 486 (582)
T KOG1257|consen 407 VLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGA 486 (582)
T ss_pred HHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCC
Q 007782 508 IRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYR 587 (590)
Q Consensus 508 ~~Itd~M~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~dl~~~i~~~m~~P~Y~ 587 (590)
++|+|+||++||++||++++++++++|.||||+++||+||.+||++|+++|+++|+|+..|+|+|+.+|++++||+|+|+
T Consensus 487 ~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~ 566 (582)
T KOG1257|consen 487 RRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYR 566 (582)
T ss_pred ccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 007782 588 NY 589 (590)
Q Consensus 588 ~~ 589 (590)
++
T Consensus 567 ~~ 568 (582)
T KOG1257|consen 567 NS 568 (582)
T ss_pred cc
Confidence 85
No 2
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.4e-211 Score=1707.17 Aligned_cols=542 Identities=76% Similarity=1.192 Sum_probs=534.6
Q ss_pred cccccccccCcCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhh-cccccchhhhcc
Q 007782 49 VASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMEL-ERNERLFYKLLI 127 (590)
Q Consensus 49 ~~~G~~ll~~p~~NKGtaFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L-~~Ne~LFy~ll~ 127 (590)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++| +|||+||||+++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 5699999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCcccchh
Q 007782 128 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 207 (590)
Q Consensus 128 ~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 207 (590)
+|++||||||||||||+|||+||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCch
Q 007782 208 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 287 (590)
Q Consensus 208 GKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~ 287 (590)
||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++|++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007782 288 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 367 (590)
Q Consensus 288 Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~ 367 (590)
||+||+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||+++
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007782 368 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 447 (590)
Q Consensus 368 i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 447 (590)
||+||++|||+++|.++|+++|++||++.++..+|+|||+.+|||||||+|+++|+|||||||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007782 448 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 527 (590)
Q Consensus 448 t~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~ 527 (590)
|++|||||||||+||+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007782 528 EENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 590 (590)
Q Consensus 528 ~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~dl~~~i~~~m~~P~Y~~~~ 590 (590)
++++..+.|||++++||+||.+||+||+++|+++|+|+..++|+++.+|++++||+|+|+|++
T Consensus 519 ~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 519 EEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred cccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 999999999999999999999999999999999999987777899999999999999999985
No 3
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-212 Score=1704.71 Aligned_cols=539 Identities=49% Similarity=0.850 Sum_probs=529.6
Q ss_pred ccccccccccCcCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhh-cccccchhhhc
Q 007782 48 SVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMEL-ERNERLFYKLL 126 (590)
Q Consensus 48 ~~~~G~~ll~~p~~NKGtaFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L-~~Ne~LFy~ll 126 (590)
+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++| +|||+||||+|
T Consensus 13 ~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll 92 (563)
T PRK13529 13 TPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRLL 92 (563)
T ss_pred ecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCcccch
Q 007782 127 IDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIP 206 (590)
Q Consensus 127 ~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~ 206 (590)
++|+|||||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++|||||
T Consensus 93 ~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~ 172 (563)
T PRK13529 93 SDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIP 172 (563)
T ss_pred HhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCc
Q 007782 207 VGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH 286 (590)
Q Consensus 207 iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~ 286 (590)
+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++|+||||++|+.+| |+++||||||+++
T Consensus 173 ~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~ 251 (563)
T PRK13529 173 IGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK 251 (563)
T ss_pred ccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 007782 287 NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 366 (590)
Q Consensus 287 ~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~ 366 (590)
|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++
T Consensus 252 ~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~~ 330 (563)
T PRK13529 252 NARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEARK 330 (563)
T ss_pred hHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 5999999999
Q ss_pred cEEEEcCCCcccCCCcCCCchhchhhccccCCC---------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCC
Q 007782 367 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 437 (590)
Q Consensus 367 ~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~---------~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e 437 (590)
+||+||++|||+++|.+ |+++|++|||+.++. .+|+|||+.+|||||||+|+++|+|||||||+|+++|+
T Consensus 331 ~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~e 409 (563)
T PRK13529 331 RFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCE 409 (563)
T ss_pred eEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC
Confidence 99999999999999965 999999999976543 68999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHH
Q 007782 438 KPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLA 517 (590)
Q Consensus 438 rPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~a 517 (590)
|||||||||||++|||||||||+||+|||||||||||+||+|+|++++||||||+|||||||||+++++|++|||+||++
T Consensus 410 rPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~a 489 (563)
T PRK13529 410 RPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMA 489 (563)
T ss_pred CCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007782 518 ASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 590 (590)
Q Consensus 518 AA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~dl~~~i~~~m~~P~Y~~~~ 590 (590)
||++||+++++++++++.|||++++||+||.+||+||+++|+++|+|+. +.|+|+.+||+++||+|+|+|++
T Consensus 490 AA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 490 AAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 9999999999999999999999999999999999999999999999984 67889999999999999999974
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2e-209 Score=1684.60 Aligned_cols=538 Identities=50% Similarity=0.843 Sum_probs=525.6
Q ss_pred ccccccccccccCcCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhh-cccccchhh
Q 007782 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMEL-ERNERLFYK 124 (590)
Q Consensus 46 ~~~~~~G~~ll~~p~~NKGtaFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L-~~Ne~LFy~ 124 (590)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||+++++||+||+||++| +|||+||||
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 4456799999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hcccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCccc
Q 007782 125 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMG 204 (590)
Q Consensus 125 ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 204 (590)
+|++|+|||||||||||||+||++||++||+|||||||++|||+|+++|+|||.++|++||||||||||||||||++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCC
Q 007782 205 IPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 284 (590)
Q Consensus 205 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~ 284 (590)
||+||++|||+||||||++|||||||||||||+||+||+|+||||+|++|++|++|+||||+||+.+| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CchHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh
Q 007782 285 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 364 (590)
Q Consensus 285 ~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA 364 (590)
++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred cCcEEEEcCCCcccCCCcCCCchhchhhcccc--CC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCc
Q 007782 365 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP 439 (590)
Q Consensus 365 ~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~~---~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erP 439 (590)
++|||+||++|||+++|.++|+++|++|||+. ++ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999766999999999974 33 56999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007782 440 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 519 (590)
Q Consensus 440 IIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA 519 (590)
|||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||
T Consensus 411 IIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA 490 (559)
T PTZ00317 411 IIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAA 490 (559)
T ss_pred EEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC--CCC-chhHHHHHHhCCcccC
Q 007782 520 EALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR--LPR-PQNLVKCAESCMYTPV 585 (590)
Q Consensus 520 ~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~--~~~-~~dl~~~i~~~m~~P~ 585 (590)
++||++++++++..|.|||++++||+||.+||+||+++|+++|+|+. .|+ ++|+.+||+++||+|.
T Consensus 491 ~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 491 ASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 99999999999999999999999999999999999999999999985 344 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.5e-119 Score=950.01 Aligned_cols=425 Identities=38% Similarity=0.558 Sum_probs=382.8
Q ss_pred ccCHHHHHHHHHHHHhcCCC-chhHHHHhhhhcccccchhhhcccCccccCCcccchhhHHHHHHHhhhhcCCCcccccc
Q 007782 85 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISL 163 (590)
Q Consensus 85 v~t~e~Q~~r~~~~~~~~~~-~l~Ky~~L~~L~~Ne~LFy~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~ 163 (590)
|+|+| |.+|.+.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++||+.|+.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~---~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~------ 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL---DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY------ 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC---CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh------
Confidence 57889 99999999999887 99999999 899999999999999999999999999999999998888874
Q ss_pred cCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCC-CCcccchhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCc
Q 007782 164 KEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDE 242 (590)
Q Consensus 164 ~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp 242 (590)
.++.+++.|||||||||||||||+| ..||+||+||++|||+||||| +|||+||+|||||
T Consensus 71 -----------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e------ 130 (432)
T COG0281 71 -----------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE------ 130 (432)
T ss_pred -----------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH------
Confidence 4566667999999999999999999 679999999999999999999 9999999999987
Q ss_pred ccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHHH--HHHHcCCCceeccCCCchHHHHHHHHHHH
Q 007782 243 FYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL--LAKYGTTHLVFNDDIQGTASVVLAGVVAA 320 (590)
Q Consensus 243 ~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~l--L~ryr~~~~~FNDDiQGTaaV~LAgll~A 320 (590)
+++||++++++||. |++||+..+.||.+ +.|||.+||||||||||||+|+||||+||
T Consensus 131 ------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llna 189 (432)
T COG0281 131 ------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNA 189 (432)
T ss_pred ------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHH
Confidence 89999999999965 55566666666655 55667899999999999999999999999
Q ss_pred HHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC-CCchhchhhcc-ccCC
Q 007782 321 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHEP 398 (590)
Q Consensus 321 ~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~-~l~~~k~~fA~-~~~~ 398 (590)
+|++|++|+|+||||+|||+||+||++||+.+|++ +++||+||++|||+++|.+ .++++|..+|. +...
T Consensus 190 lk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~ 260 (432)
T COG0281 190 LKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGE 260 (432)
T ss_pred HHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhcc
Confidence 99999999999999999999999999999987543 2899999999999999965 36777777775 4444
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcce
Q 007782 399 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFE 478 (590)
Q Consensus 399 ~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~ 478 (590)
..+ .+++ .+||||||+|++ |+||+|+|++|+ ++|||||||||| +|++||||.+|++|++|+||||
T Consensus 261 ~~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGr------ 325 (432)
T COG0281 261 RTL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGR------ 325 (432)
T ss_pred ccc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCC------
Confidence 442 4455 569999999998 899999999998 559999999999 9999999999999999999997
Q ss_pred eCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHH
Q 007782 479 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKA 558 (590)
Q Consensus 479 ~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A 558 (590)
+++|||+||+|+|||||+|+|++||++|||+|++|||+|||+++.++.. .+.|+|+++++|.+|. ||.||+++|
T Consensus 326 ----sd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA 399 (432)
T COG0281 326 ----SDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAA 399 (432)
T ss_pred ----CCCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHH
Confidence 5566699999999999999999999999999999999999999987665 7899999999999998 999999999
Q ss_pred HHcCCCCCCCCc-hhHHHHHHhCCcccCCCCCC
Q 007782 559 YELGVATRLPRP-QNLVKCAESCMYTPVYRNYR 590 (590)
Q Consensus 559 ~~~G~a~~~~~~-~dl~~~i~~~m~~P~Y~~~~ 590 (590)
+++|+|+..+.. +++.++++..+|.|.|.+++
T Consensus 400 ~~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
T COG0281 400 MEEGVARRPIDDEEAYEQALEARLWKPEYRMKR 432 (432)
T ss_pred HHcCCccCCCCCHHHHHHHHHHHhcCcccccCC
Confidence 999999965554 46899999999999998763
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1.6e-111 Score=949.28 Aligned_cols=374 Identities=31% Similarity=0.484 Sum_probs=338.9
Q ss_pred cccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCc-cc
Q 007782 126 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MG 204 (590)
Q Consensus 126 l~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mg 204 (590)
-+.+-+ .|.++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| ||
T Consensus 30 ~~~~~~-dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~p 91 (764)
T PRK12861 30 PLVTQR-DLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKP 91 (764)
T ss_pred ccCChH-HceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccc
Confidence 344444 4999999999999999 899999997 6666677899999999999999999997 99
Q ss_pred chhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCC
Q 007782 205 IPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 284 (590)
Q Consensus 205 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~ 284 (590)
||+||++|||+||||| +||+|||| +|| ++|| |||++++++||. ||||||+
T Consensus 92 vmeGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~ 141 (764)
T PRK12861 92 VMEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIK 141 (764)
T ss_pred hHHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeecc
Confidence 9999999999999999 45666666 577 7888 999999999977 9999999
Q ss_pred CchHHHHHHHHcC--CCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChh
Q 007782 285 NHNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 362 (590)
Q Consensus 285 ~~~Af~lL~ryr~--~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~e 362 (590)
+||||+||+|||+ +||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+. .|+++|
T Consensus 142 ~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~ 216 (764)
T PRK12861 142 APECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE 216 (764)
T ss_pred CchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh
Confidence 9999999999998 699999999999999999999999999999999999999999999999999975 499854
Q ss_pred hhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007782 363 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 442 (590)
Q Consensus 363 eA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 442 (590)
|||+||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||
T Consensus 217 ----~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIF 285 (764)
T PRK12861 217 ----NIWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLIL 285 (764)
T ss_pred ----hEEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEE
Confidence 999999999999999766999999999985 45799999998 899999998 8999999999997 599999
Q ss_pred ecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHH
Q 007782 443 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEAL 522 (590)
Q Consensus 443 aLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aL 522 (590)
|||||| |||+||||++ |+|++||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++|
T Consensus 286 aLsNPt--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~al 352 (764)
T PRK12861 286 ALANPT--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAI 352 (764)
T ss_pred ECCCCC--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHH
Confidence 999999 8999999987 9999999997 79999999999999999999999999999999999999999
Q ss_pred HcccCccccC------------CCccc--CCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007782 523 AKQVTEENFE------------KGLIY--PPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 579 (590)
Q Consensus 523 A~~v~~~~~~------------~g~l~--P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~dl~~~i~~ 579 (590)
|++++++++. .|.+| |+..+ ++||.+||.||+++|+++|+|+. |. +|+.+|+++
T Consensus 353 A~~~~~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 353 AGLAEEEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred HhhCCcccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 9999987533 45545 95555 68999999999999999999985 32 466666543
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=1e-110 Score=947.32 Aligned_cols=373 Identities=29% Similarity=0.451 Sum_probs=341.0
Q ss_pred cccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCc-cc
Q 007782 126 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MG 204 (590)
Q Consensus 126 l~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mg 204 (590)
-+.+.+ .|.++|||||+++|++ |+++|+++| .|+.+.+.|||||||||||||||+|++| ||
T Consensus 34 ~~~~~~-dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~p 95 (763)
T PRK12862 34 PLANQR-DLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKP 95 (763)
T ss_pred CCCCHH-HceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccc
Confidence 344444 4999999999999999 889998888 7788889999999999999999999996 99
Q ss_pred chhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-eeeeeecC
Q 007782 205 IPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDF 283 (590)
Q Consensus 205 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~-~lIqfEDf 283 (590)
||+||++|||+||||| ++|| ||||+ || ||||++|+..| |+ ..||||||
T Consensus 96 v~egK~~l~~~~~gi~---~~~i----~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~ 144 (763)
T PRK12862 96 VMEGKAVLFKKFAGID---VFDI----ELDES----DP-------------------DKLVEIVAALE-PTFGGINLEDI 144 (763)
T ss_pred hHHHHHHHHHhhcCCC---cccc----ccCCC----CH-------------------HHHHHHHHHhC-CCcceeeeecc
Confidence 9999999999999999 5555 55565 55 89999999999 88 79999999
Q ss_pred CCchHHHHHHHHcCC--CceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCCh
Q 007782 284 ANHNAFELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPV 361 (590)
Q Consensus 284 ~~~~Af~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~ 361 (590)
++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|+++
T Consensus 145 ~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~ 219 (763)
T PRK12862 145 KAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR 219 (763)
T ss_pred cCchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc
Confidence 999999999999986 89999999999999999999999999999999999999999999999999986 38874
Q ss_pred hhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 007782 362 EETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 441 (590)
Q Consensus 362 eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPII 441 (590)
+|||+||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||
T Consensus 220 ----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~pii 288 (763)
T PRK12862 220 ----ENIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLI 288 (763)
T ss_pred ----ccEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEE
Confidence 8999999999999999766999999999986 45799999998 999999999 8999999999997 99999
Q ss_pred EecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHH
Q 007782 442 LALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEA 521 (590)
Q Consensus 442 FaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~a 521 (590)
||||||| |||||||||+||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++
T Consensus 289 falsNP~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~a 355 (763)
T PRK12862 289 FALANPT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRA 355 (763)
T ss_pred EeCCCCc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHH
Confidence 9999999 99999999999999 999998 7999999999999999999999999999999999999999
Q ss_pred HHcccCccc--------------cCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007782 522 LAKQVTEEN--------------FEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 579 (590)
Q Consensus 522 LA~~v~~~~--------------~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~dl~~~i~~ 579 (590)
||+++++++ +....|||+..+ ++||..||.+|+++|+++|+|+. + .+|+.+|+++
T Consensus 356 la~~~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 356 IAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred HHhcccccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 999999873 445569996666 78999999999999999999985 3 3466666654
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=2.4e-109 Score=932.13 Aligned_cols=361 Identities=31% Similarity=0.500 Sum_probs=334.6
Q ss_pred ccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCC-cccc
Q 007782 127 IDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGI 205 (590)
Q Consensus 127 ~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI 205 (590)
+.+-+ .|+++||||||++|++ |+++|+++| ++. .+.+.|+|||||||||||||+|++ ||||
T Consensus 27 ~~~~~-dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t-------------~~~n~v~vvtdg~~vLGlGd~G~~a~~pv 88 (752)
T PRK07232 27 LATQR-DLSLAYSPGVAAPCLE---IAKDPADAY-KYT-------------ARGNLVAVISNGTAVLGLGNIGALASKPV 88 (752)
T ss_pred cCChh-hcceecCCchHHHHHH---HHhChhhcc-ccc-------------cCCcEEEEEccchhhccccccccccCccH
Confidence 33444 5999999999999996 889999999 554 455569999999999999999999 8999
Q ss_pred hhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe-eeeeecCC
Q 007782 206 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQFEDFA 284 (590)
Q Consensus 206 ~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~-lIqfEDf~ 284 (590)
|+||++|||+||||| ++ |+||||++ +||||++|+..| |+. +||||||+
T Consensus 89 ~egK~~l~~~~~gid---~~----~i~~~~~d-----------------------~de~v~~v~~~~-p~~g~i~~ED~~ 137 (752)
T PRK07232 89 MEGKGVLFKKFAGID---VF----DIEVDEED-----------------------PDKFIEAVAALE-PTFGGINLEDIK 137 (752)
T ss_pred HHHHHHHHHhhcCCC---cc----ccccCCCC-----------------------HHHHHHHHHHhC-CCccEEeeeecC
Confidence 999999999999999 55 45555653 799999999999 775 99999999
Q ss_pred CchHHHHHHHHcCC--CceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChh
Q 007782 285 NHNAFELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 362 (590)
Q Consensus 285 ~~~Af~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~e 362 (590)
+||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|++
T Consensus 138 ~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~-- 210 (752)
T PRK07232 138 APECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK-- 210 (752)
T ss_pred CchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC--
Confidence 99999999999985 89999999999999999999999999999999999999999999999999986 3887
Q ss_pred hhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007782 363 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 442 (590)
Q Consensus 363 eA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 442 (590)
+++||+||++|||+++|.++|+++|++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||
T Consensus 211 --~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piif 281 (752)
T PRK07232 211 --KENIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIF 281 (752)
T ss_pred --cccEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEE
Confidence 7899999999999999966699999999998 455799999998 999999999 8999999999997 799999
Q ss_pred ecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHH
Q 007782 443 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEAL 522 (590)
Q Consensus 443 aLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aL 522 (590)
|||||| |||+||||++||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++|
T Consensus 282 alsNP~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al 348 (752)
T PRK07232 282 ALANPD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAI 348 (752)
T ss_pred ecCCCC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHH
Confidence 999999 89999999999999 999999 79999999999999999999999999999999999999999
Q ss_pred HcccCcc--------------ccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC
Q 007782 523 AKQVTEE--------------NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR 566 (590)
Q Consensus 523 A~~v~~~--------------~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~ 566 (590)
|++++++ ++.+..|+|+.++ ++|+..||.||+++|+++|+|+.
T Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~ 405 (752)
T PRK07232 349 AELAREEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATR 405 (752)
T ss_pred HhhcccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccC
Confidence 9999886 6888999999888 57999999999999999999985
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=9.2e-100 Score=772.58 Aligned_cols=277 Identities=60% Similarity=0.974 Sum_probs=270.2
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 007782 306 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 385 (590)
Q Consensus 306 iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l 385 (590)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999965 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 007782 386 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 463 (590)
Q Consensus 386 ~~~k~~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~ 463 (590)
+++|++||++.+ +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCc
Q 007782 464 GRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 543 (590)
Q Consensus 464 G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~~~~~~~g~l~P~~~~i 543 (590)
|+|||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++.++.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccc
Q 007782 544 RKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 584 (590)
Q Consensus 544 r~vs~~VA~aVa~~A~~~G~a~~~~~~~dl~~~i~~~m~~P 584 (590)
|+||..||.+|+++|+++|+|+..++|+|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987676789999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=1.3e-96 Score=741.40 Aligned_cols=252 Identities=54% Similarity=0.898 Sum_probs=229.9
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 007782 306 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 385 (590)
Q Consensus 306 iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l 385 (590)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|+||||+||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999986 9999999999999999999999995 59
Q ss_pred chhchhhccccCCCC---CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007782 386 QHFKKPWAHEHEPVN---NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 462 (590)
Q Consensus 386 ~~~k~~fA~~~~~~~---~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt 462 (590)
+++|++|||+..+.. +|+|+|+.+|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 999999999876654 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007782 463 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 542 (590)
Q Consensus 463 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~~~~~~~g~l~P~~~~ 542 (590)
+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHH
Q 007782 543 IRKISANIAANVAAKAY 559 (590)
Q Consensus 543 ir~vs~~VA~aVa~~A~ 559 (590)
+|+||.+||.+|+++||
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1e-93 Score=719.68 Aligned_cols=251 Identities=51% Similarity=0.775 Sum_probs=245.4
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 007782 306 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 385 (590)
Q Consensus 306 iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l 385 (590)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||||+|||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999997 499999999999999999999999965 9
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007782 386 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 462 (590)
Q Consensus 386 ~~~k~~---fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt 462 (590)
.++|++ |+++.++..+|+|+|+.+|||||||+|+++|+||+|+|++|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007782 463 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 542 (590)
Q Consensus 463 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~~~~~~~g~l~P~~~~ 542 (590)
+|||||||||||+||+|||++|+|+||||+|+|||||||+++++|++|||+||++||++||++++++++.++.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 007782 543 IRKISANIAANVAAKA 558 (590)
Q Consensus 543 ir~vs~~VA~aVa~~A 558 (590)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=9.3e-84 Score=619.23 Aligned_cols=181 Identities=66% Similarity=1.211 Sum_probs=163.1
Q ss_pred cccccchhhhcccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecC
Q 007782 116 ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGL 195 (590)
Q Consensus 116 ~~Ne~LFy~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGL 195 (590)
++||+|||+++.+|++|+||||||||||+|||+||++|++|+|||+|++|+|+|+++|+|||.++|++||||||||||||
T Consensus 2 ~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILGl 81 (182)
T PF00390_consen 2 DRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILGL 81 (182)
T ss_dssp TTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTTT
T ss_pred CccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC
Q 007782 196 GDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK 275 (590)
Q Consensus 196 GDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~ 275 (590)
||+|++|||||+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++||||||+||+++|||+
T Consensus 82 GD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp~ 161 (182)
T PF00390_consen 82 GDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGPN 161 (182)
T ss_dssp BS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGCT
T ss_pred cCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCCchHHHHHHHHc
Q 007782 276 VLIQFEDFANHNAFELLAKYG 296 (590)
Q Consensus 276 ~lIqfEDf~~~~Af~lL~ryr 296 (590)
++||||||+++|||++|+|||
T Consensus 162 ~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 162 ALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp SEEEE-S--CCHHHHHHHHHT
T ss_pred eEEEEecCCChhHHHHHHhcC
Confidence 999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=9.2e-59 Score=459.56 Aligned_cols=223 Identities=38% Similarity=0.518 Sum_probs=207.7
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 007782 306 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 385 (590)
Q Consensus 306 iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l 385 (590)
+||||+|++||+++|++..|.+++|+||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.++|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 3886 679999999999999997669
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007782 386 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 462 (590)
Q Consensus 386 ~~~k~~fA~~~--~~~-~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt 462 (590)
.++|++|+++. .+. .+|.|++++ ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 222 378899986 999999999 8899999999996 899999999999 89999999999
Q ss_pred CCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007782 463 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 542 (590)
Q Consensus 463 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~~~~~~~g~l~P~~~~ 542 (590)
|..||+|| +++.|+|+||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 007782 543 IRKISANIAANVAAKA 558 (590)
Q Consensus 543 ir~vs~~VA~aVa~~A 558 (590)
|+||..||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.87 E-value=2.6e-08 Score=84.89 Aligned_cols=86 Identities=37% Similarity=0.492 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 387 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 387 (590)
+||.++++++..+.+..+.++++.+++|+|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999998764 3 257999988
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007782 388 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 388 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 445 (590)
|+||++++.++.|+++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999888 455557999999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.72 E-value=0.0012 Score=72.50 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=106.6
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHHH---------------------HHHHc-------CCCcee
Q 007782 251 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVF 302 (590)
Q Consensus 251 R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~l---------------------L~ryr-------~~~~~F 302 (590)
..+-++|...+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 346678888777765 345677666 5555544433 13453 379999
Q ss_pred c----------cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc
Q 007782 303 N----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 372 (590)
Q Consensus 303 N----------DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD 372 (590)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEc
Confidence 8 6678888777666653 446778999999999999999999888642 52 588887
Q ss_pred CCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 373 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 373 ~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
.+- .|. +...+ ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+-+.
T Consensus 243 ~dp----~ra--~~A~~-----~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VDP----ICA--LQAAM-----DGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CCc----hhh--HHHHh-----cCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 641 111 11111 11123468888875 89999988877788888888885 334555555443
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.26 E-value=0.0012 Score=71.98 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=81.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 307 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 307 QGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
.+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. .+++++|+.. +| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5666777777766666655 4889999999999999999888854 264 5788887741 11 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCc-EEEecCCCC
Q 007782 387 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPT 448 (590)
Q Consensus 387 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erP-IIFaLSNPt 448 (590)
...+.+....-+..++.+++.. .|++|-+++.+ .+++++.++.+.....+| +|+-+++|.
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111122467788875 89999987544 578999999875433366 889999997
No 17
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.10 E-value=0.02 Score=63.45 Aligned_cols=188 Identities=18% Similarity=0.180 Sum_probs=130.7
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHH---HHHHHcCC---C-ce------e----ccCCCchHHHHH
Q 007782 252 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGTT---H-LV------F----NDDIQGTASVVL 314 (590)
Q Consensus 252 ~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~~---~-~~------F----NDDiQGTaaV~L 314 (590)
.+..|-..|...|+.++.+.+||..=|-=+|++. +... +.+.|+.- . .+ . .+--..||-=+.
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~ 216 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLV 216 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHH
Confidence 4556888899999999999999988888889874 3332 66777631 1 11 1 123345777778
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-cCCCcccCCCcCCCchh-----
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF----- 388 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lv-D~~GLv~~~R~~~l~~~----- 388 (590)
.++..+++..|.+|++.||+|.|-|..|...|++|.. .|. +++-+ |++|-|+...+ |+..
T Consensus 217 ~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~G--LD~~~L~~~ 282 (445)
T PRK09414 217 YFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEEG--IDLEKLKEI 282 (445)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCCC--CCHHHHHHH
Confidence 8888999999999999999999999999999999954 353 45555 99999998753 4332
Q ss_pred ch-------hhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 007782 389 KK-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 459 (590)
Q Consensus 389 k~-------~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEctpedA~ 459 (590)
|. .|... ....-+- +.+..++.||||=+.. ++..|++-...+-. +.-.||.=-+| |+ -+| +++++
T Consensus 283 k~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L 356 (445)
T PRK09414 283 KEVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVF 356 (445)
T ss_pred HHhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHH
Confidence 21 11110 0001122 2344568999996665 77999999998853 45789999998 76 233 44555
Q ss_pred c
Q 007782 460 T 460 (590)
Q Consensus 460 ~ 460 (590)
.
T Consensus 357 ~ 357 (445)
T PRK09414 357 L 357 (445)
T ss_pred H
Confidence 4
No 18
>PLN02477 glutamate dehydrogenase
Probab=97.07 E-value=0.016 Score=63.61 Aligned_cols=186 Identities=22% Similarity=0.241 Sum_probs=127.9
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHH--HHHHHHcC----CCcee----------ccCCCchHHHHHH
Q 007782 252 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT----THLVF----------NDDIQGTASVVLA 315 (590)
Q Consensus 252 ~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af--~lL~ryr~----~~~~F----------NDDiQGTaaV~LA 315 (590)
.+..|-..|...|+.++.+..||..=|-=+|++..-.- -+.+.|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 45667888999999999999998765666787654221 15567753 11111 2233448877888
Q ss_pred HHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCcccCCCcCCCchhch-hhc
Q 007782 316 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 393 (590)
Q Consensus 316 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~-lvD~~GLv~~~R~~~l~~~k~-~fA 393 (590)
++-.+++..|.+|++.||+|.|.|..|.+.|++|.+. |. ++. +.|++|-|+.... |+..+. .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~G--LD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNENG--LDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCCC--CCHHHHHHHH
Confidence 8889999999999999999999999999999988653 63 555 8999999998753 443211 111
Q ss_pred ccc------CC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007782 394 HEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 460 (590)
Q Consensus 394 ~~~------~~--~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEctpedA~~ 460 (590)
+.. +. .-+-.+.+. .+.||||=+. .++.+|++.+..+ .-.||.--+| |+ .+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 110 00 012233343 4899999655 5779999999987 6889999999 65 344 445554
No 19
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.07 E-value=0.0029 Score=66.17 Aligned_cols=136 Identities=23% Similarity=0.361 Sum_probs=86.4
Q ss_pred chHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007782 286 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 365 (590)
Q Consensus 286 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~ 365 (590)
.+||++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..++..+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----GV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----CC------
Confidence 46777777777654444 34456666666555555554 8999999999999999988888642 42
Q ss_pred CcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEe
Q 007782 366 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILA 443 (590)
Q Consensus 366 ~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFa 443 (590)
++|+++|+. .+| .....+.|-.......++.++++. .|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679988874 121 112222221111112357787775 8999999887754 66666654322 2347778
Q ss_pred cCCCC
Q 007782 444 LSNPT 448 (590)
Q Consensus 444 LSNPt 448 (590)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 20
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.04 E-value=0.0078 Score=60.47 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 309 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 309 TaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. + |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 44456677788889999999999999999999999999999763 53 678899999988876 4 4332
Q ss_pred -chhhccccCCCCC-------HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 007782 389 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 459 (590)
Q Consensus 389 -k~~fA~~~~~~~~-------L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEctpedA~ 459 (590)
...+.++...... =.+.+-.++.||||=++. .+..|++..+.+ .-++|..-+| |++. .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t~---~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTTD---EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCCH---HHHHHH
Confidence 1222221111110 013444568899997776 569999999988 4789998888 8742 456666
Q ss_pred c
Q 007782 460 T 460 (590)
Q Consensus 460 ~ 460 (590)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 5
No 21
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.01 E-value=0.011 Score=64.91 Aligned_cols=129 Identities=18% Similarity=0.241 Sum_probs=93.6
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007782 298 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 367 (590)
Q Consensus 298 ~~~~FN----------DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~ 367 (590)
.+|+|+ |...||+--++-+++ |.++..+.+.+++|+|+|..|.++|..+... |. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~~-----Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-----GA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------E
Confidence 788885 667899998887776 5667889999999999999999999877542 63 4
Q ss_pred EEEEcCCCcccCCCcCCCchhchhhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007782 368 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 446 (590)
Q Consensus 368 i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 446 (590)
++++|.+ . .+..+|+. .-...++.++++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~--------~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----P--------ICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----h--------hhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777653 1 12223332 1112246788865 79999999888889998888885 5557766776
Q ss_pred CCCCCCCCHHHHhc
Q 007782 447 PTSQSECTAEEAYT 460 (590)
Q Consensus 447 Pt~~aEctpedA~~ 460 (590)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 63 7888887654
No 22
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.97 E-value=0.0028 Score=69.08 Aligned_cols=120 Identities=27% Similarity=0.408 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 387 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 387 (590)
+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++++++|+.. .| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----ER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----HH---HHH
Confidence 355666666554444444 6889999999999999999888753 264 6788887741 22 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC--CCcEEEecCCCC
Q 007782 388 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN--EKPLILALSNPT 448 (590)
Q Consensus 388 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~--erPIIFaLSNPt 448 (590)
..+.|.....+..++.+++.. .|++|-+++.+ .+++++.++.+.+.. ...+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 222221111112456677764 89999988755 478999999875322 335888999997
No 23
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.90 E-value=0.015 Score=63.79 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=88.0
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007782 298 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 367 (590)
Q Consensus 298 ~~~~FN----------DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~ 367 (590)
.+|+|| |...||+--++-+++ |.++..+.+.+++|+|.|..|.++|..+... |. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-----Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARGM-----GA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-----cC-------E
Confidence 788887 667899977776655 5677789999999999999999999877632 53 5
Q ss_pred EEEEcCCCcccCCCcCCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007782 368 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 446 (590)
Q Consensus 368 i~lvD~~GLv~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 446 (590)
++++|.+- .| ...|+ +.....++.|+++. .|++|-+++..++++++.+..|. +.-||.-.+-
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887541 11 11111 11122357788875 89999888877788888888885 4557766666
Q ss_pred CCCCCCCCHHHH
Q 007782 447 PTSQSECTAEEA 458 (590)
Q Consensus 447 Pt~~aEctpedA 458 (590)
.. .|+.-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 54 55554443
No 24
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.78 E-value=0.046 Score=60.67 Aligned_cols=181 Identities=16% Similarity=0.104 Sum_probs=123.9
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHH--HHHHHHcC---C-Ccee----------ccCCCchHHHHHH
Q 007782 252 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT---T-HLVF----------NDDIQGTASVVLA 315 (590)
Q Consensus 252 ~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af--~lL~ryr~---~-~~~F----------NDDiQGTaaV~LA 315 (590)
.+-.|...|.-.||..+...+||+.-|-=+|++..-.- -+.+.|+. . .-+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 45667888999999999999999999999999763322 26667752 1 2233 2333558887888
Q ss_pred HHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc
Q 007782 316 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 395 (590)
Q Consensus 316 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~ 395 (590)
++-.+++..|.+|+++||+|-|.|..|...|+.|.+. |. +=+-+-|++|-|++.. .|+..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999998763 63 3355689999888754 355543322110
Q ss_pred c-----C---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007782 396 H-----E---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 448 (590)
Q Consensus 396 ~-----~---------~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 448 (590)
. . .. -+-.+ +-.++.|+||=+.. .+..|++.++.+.... .-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~g-~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVANG-VIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhcC-CeEEECCCCCCC
Confidence 0 0 00 01111 22256889986555 5789999999985311 127777777 54
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.76 E-value=0.053 Score=60.66 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=84.6
Q ss_pred CCceeccCCCchHHHH-------HHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEE
Q 007782 298 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 370 (590)
Q Consensus 298 ~~~~FNDDiQGTaaV~-------LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~l 370 (590)
.+|++|=+---|-+++ ++.+=+.+|.++..|.+.+++|+|.|..|.++|..+... |. ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~-----Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGF-----GA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEE
Confidence 6899986655554433 444455677889999999999999999999999988642 53 4777
Q ss_pred EcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007782 371 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 447 (590)
Q Consensus 371 vD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 447 (590)
+|++-. +. +.... ..-...++.++++. .|++|-+.+..++|+++.++.|. +.-|+.-.+..
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~ 343 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHF 343 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCC
Confidence 765411 10 11111 11112468888876 99999988888899999999996 55566655554
No 26
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.76 E-value=0.01 Score=57.52 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhc
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 393 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA 393 (590)
.+.+-.++....+|++.+++++|+|. .|..+|+.|.. .|. ++++++++
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~------------------- 77 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK------------------- 77 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC-------------------
Confidence 33344555566789999999999998 59889988864 242 58888864
Q ss_pred cccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 394 HEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 394 ~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
..+|.+.++. .|++|..++.+..|+++.++ +.-+|+=|+.|-
T Consensus 78 -----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788887 99999999988899999764 346788888876
No 27
>PLN02494 adenosylhomocysteinase
Probab=96.73 E-value=0.018 Score=64.29 Aligned_cols=131 Identities=17% Similarity=0.268 Sum_probs=94.2
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007782 298 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 367 (590)
Q Consensus 298 ~~~~FN----------DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~ 367 (590)
.+|+|| |...||+--++-|++ |.++..+.+.+++|+|.|..|.++|..+.. .|. +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 456898888877777 667888999999999999999999999853 263 5
Q ss_pred EEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007782 368 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 447 (590)
Q Consensus 368 i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 447 (590)
++++|.+.. |. +.....-| ...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.+
T Consensus 280 VIV~e~dp~----r~--~eA~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr~ 343 (477)
T PLN02494 280 VIVTEIDPI----CA--LQALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGHF 343 (477)
T ss_pred EEEEeCCch----hh--HHHHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCCC
Confidence 777776421 10 11111111 12368888875 89999887777788999999995 66788888886
Q ss_pred CCCCCCCHHHHhcc
Q 007782 448 TSQSECTAEEAYTW 461 (590)
Q Consensus 448 t~~aEctpedA~~w 461 (590)
. .|+.-+...++
T Consensus 344 ~--~eID~~aL~~~ 355 (477)
T PLN02494 344 D--NEIDMLGLETY 355 (477)
T ss_pred C--CccCHHHHhhc
Confidence 5 77777766554
No 28
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.62 E-value=0.0026 Score=58.74 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=67.1
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc---cCCCCCH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 402 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~---~~~~~~L 402 (590)
.++++.|++|+|||.+|-+++..|... |. ++|+++++. .+| .....+.|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 389999999999999998888887653 64 789999874 222 23333333110 1123456
Q ss_pred HHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007782 403 LDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPLILALSNPTS 449 (590)
Q Consensus 403 ~e~V~~vkPtvLIG~S~~~g-~Ft~evv~~Ma~~~erPIIFaLSNPt~ 449 (590)
.+.++. .|++|-+++.+. .++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 667765 999999887663 7888888654211 249999999964
No 29
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.61 E-value=0.015 Score=60.64 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=90.7
Q ss_pred CchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 307 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 307 QGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
..+-+++=.++.-+++..+..|.+.+++|+|+|.+|..+|+.+... |. +++++|++. . .+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HHH
Confidence 4445666666667778888899999999999999999999998642 52 588887741 1 111
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcE
Q 007782 387 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 466 (590)
Q Consensus 387 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~a 466 (590)
..+ .+....-...+|.+.+++ .|++|=+. ..+.++++.++.|. +.-+|+=+|..- -++.++.|-+ -+-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 111 000011112457777775 89999654 34578999998885 456888776532 4556654433 34478
Q ss_pred EEecCCC
Q 007782 467 IFASGSP 473 (590)
Q Consensus 467 ifAsGSP 473 (590)
+.+-|-|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 8888865
No 30
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.54 E-value=0.11 Score=57.70 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=129.9
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHH---HHHHHcC----CCceecc---CC-------CchHHHHH
Q 007782 252 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFND---DI-------QGTASVVL 314 (590)
Q Consensus 252 ~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~----~~~~FND---Di-------QGTaaV~L 314 (590)
.+..|-..|.-.||..+.+..||+.=|-=.|++. ++.+ +++.|+. ...++.- +. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4555788899999999998889998888888884 4433 5677753 2223211 12 23888888
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchh---
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP--- 391 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~--- 391 (590)
-++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+-|++|-|++.. .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999999653 64 4567789999998764 35443311
Q ss_pred ------------hccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHH
Q 007782 392 ------------WAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 456 (590)
Q Consensus 392 ------------fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEctpe 456 (590)
+....+.. -+-.+ +-.++.||||=+.. ++..|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 11010010 01122 23467899996665 57999999999853 35678888888 543 33 44
Q ss_pred HHhc
Q 007782 457 EAYT 460 (590)
Q Consensus 457 dA~~ 460 (590)
+++.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 31
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.43 E-value=0.014 Score=64.08 Aligned_cols=215 Identities=20% Similarity=0.291 Sum_probs=129.1
Q ss_pred CchHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh
Q 007782 285 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 364 (590)
Q Consensus 285 ~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA 364 (590)
-..||..=.|.|.+-- + -.|--+|.-|++--|-++.|. |++.+++|+|||..|..+|..|... |+
T Consensus 138 FqkAi~~gKrvRseT~-I---~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~----- 202 (414)
T COG0373 138 FQKAISVGKRVRSETG-I---GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV----- 202 (414)
T ss_pred HHHHHHHHHHhhcccC-C---CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC-----
Confidence 3567777777775310 0 123334445555555555554 9999999999999999998888753 64
Q ss_pred cCcEEEEcCCCcccCCCcCCCchhchhhcccc----CCCCCHHHHhcccCCcEEEec-cCCCCCCCHHHHHHHHcCCCCc
Q 007782 365 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGS-SGVGRTFTKEVIEAMASFNEKP 439 (590)
Q Consensus 365 ~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~----~~~~~L~e~V~~vkPtvLIG~-S~~~g~Ft~evv~~Ma~~~erP 439 (590)
++|+++.+. ..| -+.+|+.. -....|.+.+.. .||+|-. |++.-+++.+.++.-.+..++=
T Consensus 203 -~~i~IaNRT----~er-------A~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~ 268 (414)
T COG0373 203 -KKITIANRT----LER-------AEELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRL 268 (414)
T ss_pred -CEEEEEcCC----HHH-------HHHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCe
Confidence 788887662 222 12233321 123456677766 8888854 4555689999988765444445
Q ss_pred EEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007782 440 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 519 (590)
Q Consensus 440 IIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA 519 (590)
+||=|+||-.- ++ ..+.-||+++|===-|-.+...-..-..+... +|
T Consensus 269 livDiavPRdi---------e~-----------------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~-~a 315 (414)
T COG0373 269 LIVDIAVPRDV---------EP-----------------------EVGELPNVFLYTIDDLEEIVEENLEARKEEAA-KA 315 (414)
T ss_pred EEEEecCCCCC---------Cc-----------------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHHH-HH
Confidence 99999999831 11 12334555555444444443332222223222 22
Q ss_pred HHH-----HcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCC
Q 007782 520 EAL-----AKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGV 563 (590)
Q Consensus 520 ~aL-----A~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~ 563 (590)
+++ +.+.. .+..-.+-|.+.++|+-+..|...-.+.|.+.--
T Consensus 316 e~iIeee~~~~~~--~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l~ 362 (414)
T COG0373 316 EAIIEEELAEFME--WLKKLEVVPTIRALREQAEDVREEELEKALKKLP 362 (414)
T ss_pred HHHHHHHHHHHHH--HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222 22221 3445678899999998888888888888875443
No 32
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.18 E-value=0.041 Score=57.54 Aligned_cols=128 Identities=22% Similarity=0.297 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchh
Q 007782 312 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 391 (590)
Q Consensus 312 V~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~ 391 (590)
++-+++..|++..+.++.+.|++|+|+|.+|..++..+.. .| -+++++|++- . +..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~~----~--------~~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARKS----A--------HLA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECCH----H--------HHH
Confidence 3334566677888889999999999999999999888864 25 2688888761 1 111
Q ss_pred hccc----cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC-cE
Q 007782 392 WAHE----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-RA 466 (590)
Q Consensus 392 fA~~----~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G-~a 466 (590)
+++. .-...+|.+.++. .|++|-++. ...++++.++.|. +.-+|+=++... -.|..+.|.+ .| ++
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~ 259 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKA 259 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEE
Confidence 1111 0112467788875 999998754 4578999998886 566777665433 2354443322 34 45
Q ss_pred EEecCCC
Q 007782 467 IFASGSP 473 (590)
Q Consensus 467 ifAsGSP 473 (590)
+.++|-|
T Consensus 260 ~~~~~lp 266 (296)
T PRK08306 260 LLAPGLP 266 (296)
T ss_pred EEECCCC
Confidence 5566644
No 33
>PLN00203 glutamyl-tRNA reductase
Probab=96.16 E-value=0.023 Score=64.11 Aligned_cols=200 Identities=20% Similarity=0.264 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHHHHHhCC-CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 308 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~-~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
|--+|+-+++=-|.+..|. +|.+.+|+|+|||..|..+++.+.. .|. ++|+++++. .+| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 3345555566556666664 6999999999999999988887753 363 679988875 122 22
Q ss_pred hhchhhcc---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC---CCc-EEEecCCCCCCCCCCHHHH
Q 007782 387 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EKP-LILALSNPTSQSECTAEEA 458 (590)
Q Consensus 387 ~~k~~fA~---~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~---erP-IIFaLSNPt~~aEctpedA 458 (590)
..+..|-. ...+..++.+++.. .|++|.+++.+ .+|++++++.|-+.. .+| +|+=||.|-.--.+-.
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~--- 379 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVS--- 379 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccc---
Confidence 22222210 01123467788875 89999876544 489999999984321 244 5667999963111110
Q ss_pred hcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHH----HHHHcccCccccCCC
Q 007782 459 YTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS----EALAKQVTEENFEKG 534 (590)
Q Consensus 459 ~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA----~aLA~~v~~~~~~~g 534 (590)
...|+++|===-|-.+......-..+-...|- +.+..+. +.+..-
T Consensus 380 -----------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~~Ae~II~ee~~~F~--~w~~~~ 428 (519)
T PLN00203 380 -----------------------------ELESARVYNVDDLKEVVAANKEDRLRKAMEAQTIIREESKNFE--AWRDSL 428 (519)
T ss_pred -----------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 01112222111122232222221121122211 1222221 134456
Q ss_pred cccCCCCCchhhHHHHHHHHHHHHHHc
Q 007782 535 LIYPPFSNIRKISANIAANVAAKAYEL 561 (590)
Q Consensus 535 ~l~P~~~~ir~vs~~VA~aVa~~A~~~ 561 (590)
.+-|-+.++|+-...|..+=.+.+++.
T Consensus 429 ~~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 429 ETVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999988888888764
No 34
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.12 E-value=0.034 Score=59.71 Aligned_cols=113 Identities=20% Similarity=0.326 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 007782 309 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 387 (590)
Q Consensus 309 TaaV~LAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 387 (590)
|+++...++--|.+..|..|++.+++|.|| |+.|--+|++|... .|. +++++++++ .. .+..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~---rl~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QE---RLQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HH---HHHH
Confidence 678888888889999999999999999999 89999999998642 232 578888764 11 2333
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC--CCHHHHHHHHcCCCCc-EEEecCCCCC
Q 007782 388 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT--FTKEVIEAMASFNEKP-LILALSNPTS 449 (590)
Q Consensus 388 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~--Ft~evv~~Ma~~~erP-IIFaLSNPt~ 449 (590)
.+.++.. ....+|.+++.. +|+++=+++.+.. ++++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 3334421 123468888876 9999988776432 677655 344 5566899863
No 35
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.12 E-value=0.036 Score=54.73 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=82.5
Q ss_pred chHHHHHHHHHHHHHHh--CCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCC
Q 007782 308 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 385 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~--g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l 385 (590)
.||-=+..++-.+++.. +.+|++.+++|.|.|..|..+|+.|.+. | -+++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 35555666777777775 8899999999999999999999988653 6 3688888651 123
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007782 386 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 460 (590)
Q Consensus 386 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEctpedA~~ 460 (590)
..++..|.. ... +..+... .+.|+++=++. +++.|++.++.| .-++|..-+| |++. ..+++.++
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccCC--HhHHHHHH
Confidence 333333311 111 2233333 36999995554 679999999999 4678888888 6632 33445544
No 36
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.11 E-value=0.5 Score=52.83 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=125.9
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHH---HHHHHc---CCC-ceecc----------CCCchHHHHH
Q 007782 252 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYG---TTH-LVFND----------DIQGTASVVL 314 (590)
Q Consensus 252 ~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr---~~~-~~FND----------DiQGTaaV~L 314 (590)
.+..|-..|...||..+.+..||+.=|-=.|++. ++.+ +.+.|+ +.+ .|+-. --..||-=+.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556677899999999999999999999999984 3333 455554 222 22221 1223887778
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCcccCCCcCCCchhch---
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK--- 390 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~-lvD~~GLv~~~R~~~l~~~k~--- 390 (590)
.++-.+++..|.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88889999999999999999999999999999998653 63 455 999999999875 3544332
Q ss_pred ------------hhccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 007782 391 ------------PWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 449 (590)
Q Consensus 391 ------------~fA~~~~~~~--~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 449 (590)
.|+......+ +- +.+-.++.|||+=+.. .+..|++-++.+-+ +.-.+|.=-+| |++
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~-~~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPG-KKPWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCC-cCcccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC
Confidence 2211000000 11 1122368899997766 56999999998843 34568888888 663
No 37
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.10 E-value=0.056 Score=54.70 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=89.0
Q ss_pred CchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 307 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 307 QGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|-++|++|.+. |. +=+.+.|++|-+++..+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4577777888888899999999999999999999999999998653 53 34559999999988653 43
Q ss_pred hhch-hhccccCC------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007782 387 HFKK-PWAHEHEP------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 448 (590)
Q Consensus 387 ~~k~-~fA~~~~~------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 448 (590)
.... .+.+.... . -+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 2221 11111000 0 12223 3445889999777 5779999999998 5889999999 55
No 38
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.95 E-value=0.041 Score=57.56 Aligned_cols=108 Identities=19% Similarity=0.307 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
+.+-.|-.|++..++..+.+++++++|++|+|- +|-.||.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 346677799999999999999999999999997 99999999864 24 2 57778752
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec-CCCCC--C-CCCCHHHHh
Q 007782 387 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPTS--Q-SECTAEEAY 459 (590)
Q Consensus 387 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~--~-aEctpedA~ 459 (590)
..+|.+.+++ .|++|-+++.++.|+.+.++ +.-+|+=. .||.. . -++.+|++.
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~ 249 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIE 249 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhh
Confidence 1246666764 99999999999989988764 44566544 36631 1 144555554
No 39
>PLN00106 malate dehydrogenase
Probab=95.83 E-value=0.045 Score=58.28 Aligned_cols=118 Identities=25% Similarity=0.333 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhc
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 393 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA 393 (590)
|.-+.|||..|..-. .||+|+|| |..|.-+|..|+. .|+ ...+.|+|.+- ..+-.-+|.+-.. +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 445778999888766 69999999 9999999988764 244 35799999865 1211112332211 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 394 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 394 ~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
+-. ....++.++++. .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 211 123467888987 8888866665422 3457888889999999999999999
No 40
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.79 E-value=0.031 Score=61.36 Aligned_cols=211 Identities=14% Similarity=0.204 Sum_probs=112.5
Q ss_pred chHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007782 286 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 365 (590)
Q Consensus 286 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~ 365 (590)
..||+.=.|-|.+.-+ + .|.-+|+-+|+=-|.+.. .++++.|++|+|||.+|-.+|..+.. .|.
T Consensus 142 ~~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------ 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------ 205 (414)
T ss_pred HHHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------
Confidence 3455555555643211 0 122234444443333333 45889999999999999888887754 364
Q ss_pred CcEEEEcCCCcccCCCcCCCchhchhhc-cccCCCCCHHHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcE-EE
Q 007782 366 KKICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPL-IL 442 (590)
Q Consensus 366 ~~i~lvD~~GLv~~~R~~~l~~~k~~fA-~~~~~~~~L~e~V~~vkPtvLIG~S~~~g-~Ft~evv~~Ma~~~erPI-IF 442 (590)
++|+++++. .+|. ......|. ....+..+|.+++.. .|++|-+++.+. ++|++.++ .+|. |+
T Consensus 206 ~~I~V~nRt----~~ra---~~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~i 270 (414)
T PRK13940 206 KQIMLANRT----IEKA---QKITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFI 270 (414)
T ss_pred CEEEEECCC----HHHH---HHHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEE
Confidence 679988774 2221 12222221 111223467777776 999998877664 67876652 4565 46
Q ss_pred ecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHH---
Q 007782 443 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS--- 519 (590)
Q Consensus 443 aLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA--- 519 (590)
=|++|-.-- | . .+...|+++|===-|-.+......-..+....|-
T Consensus 271 DLavPRdid---p--~---------------------------v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI 318 (414)
T PRK13940 271 DISIPQALD---P--K---------------------------LGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKII 318 (414)
T ss_pred EeCCCCCCC---c--c---------------------------ccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799997211 1 0 0111222222111122222221111122122211
Q ss_pred -HHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHc
Q 007782 520 -EALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 561 (590)
Q Consensus 520 -~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~ 561 (590)
+.+.++. +.+..-.+-|-+.++|+-...|...-.+.+.+.
T Consensus 319 ~e~~~~f~--~w~~~~~~~p~I~~lr~~~~~i~~~el~r~~~~ 359 (414)
T PRK13940 319 VKSLEEYL--EKEKAIISNSAIKELFQKADGLVDLSLEKSLAK 359 (414)
T ss_pred HHHHHHHH--HHHHhccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222 134456788999999988888888878777754
No 41
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.79 E-value=0.17 Score=52.49 Aligned_cols=133 Identities=21% Similarity=0.154 Sum_probs=91.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCcccCCCcCCCc
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~-lvD~~GLv~~~R~~~l~ 386 (590)
-||-=+.-++-.+++..+.+|++.||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC--CCC
Confidence 466667778888889999999999999999999999999999653 63 455 899999998875 344
Q ss_pred hhch---------------hhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007782 387 HFKK---------------PWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 448 (590)
Q Consensus 387 ~~k~---------------~fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 448 (590)
..+. .|....+.. -+-.|. -.++.||||=+.. ++..|++.+..+.. +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~-~~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKP-WEVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcch-hcCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 2211 111000000 122222 2457899996654 67999999999843 35789999998 77
Q ss_pred CCCCCCHHHHhc
Q 007782 449 SQSECTAEEAYT 460 (590)
Q Consensus 449 ~~aEctpedA~~ 460 (590)
+. | +++.+.
T Consensus 159 t~-~--a~~~L~ 167 (254)
T cd05313 159 TA-E--AIEVFR 167 (254)
T ss_pred CH-H--HHHHHH
Confidence 32 2 445544
No 42
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.73 E-value=0.13 Score=52.91 Aligned_cols=191 Identities=18% Similarity=0.166 Sum_probs=102.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc-------hhhccc--------
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWAHE-------- 395 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k-------~~fA~~-------- 395 (590)
.||.|+|+|..|.+||..++.. | .+++++|.+- + .++..+ ..+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888643 5 3688998641 1 111111 111000
Q ss_pred -------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEE
Q 007782 396 -------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 468 (590)
Q Consensus 396 -------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aif 468 (590)
.....++.++++. .|++|=+-.-.-.+.+++++.+.+......|+ .||.+++ .+.++.+.++-..=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccC---CHHHHHhhcCCcccE
Confidence 0113578888876 78887543222235677777777766655666 3565554 444544433211113
Q ss_pred ecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCc-cc-CCCCCchhh
Q 007782 469 ASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGL-IY-PPFSNIRKI 546 (590)
Q Consensus 469 AsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~~~~~~~g~-l~-P~~~~ir~v 546 (590)
....||.|+.... ..- +.....-+++.+. .+..+...+- +.. ++ |... --|
T Consensus 139 vg~Hf~~p~~~~~---------lve----------vv~~~~t~~~~~~-~~~~~~~~~G-----k~pv~v~~d~p--gfi 191 (287)
T PRK08293 139 LALHFANEIWKNN---------TAE----------IMGHPGTDPEVFD-TVVAFAKAIG-----MVPIVLKKEQP--GYI 191 (287)
T ss_pred EEEcCCCCCCcCC---------eEE----------EeCCCCCCHHHHH-HHHHHHHHcC-----CeEEEecCCCC--CHh
Confidence 3357777764221 111 2222333555444 4555554432 222 22 2222 256
Q ss_pred HHHHHHHHHHHHH---HcCCCCCCCCchhHHHHH
Q 007782 547 SANIAANVAAKAY---ELGVATRLPRPQNLVKCA 577 (590)
Q Consensus 547 s~~VA~aVa~~A~---~~G~a~~~~~~~dl~~~i 577 (590)
..++-.++...|. ++|+++ |+|+....
T Consensus 192 ~nRi~~~~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 192 LNSLLVPFLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC----HHHHHHHH
Confidence 6666666666654 589886 35555443
No 43
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.61 E-value=0.071 Score=56.10 Aligned_cols=95 Identities=17% Similarity=0.334 Sum_probs=75.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
+=.-+|-+|++.-++..+.+|++.+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 445678889999999999999999999999988 99999999864 24 3577777541
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007782 387 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 446 (590)
Q Consensus 387 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 446 (590)
.+|.+.+++ .|++|...+.++.|++++++ +.-+|+=++.
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi 231 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGN 231 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCC
Confidence 257788887 99999999999999998764 3345555544
No 44
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.59 E-value=0.036 Score=57.60 Aligned_cols=91 Identities=18% Similarity=0.284 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch-hchhh
Q 007782 314 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPW 392 (590)
Q Consensus 314 LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~-~k~~f 392 (590)
-.|++.+++..+..+++++++++|||.||..|+..+.. .|+ ++|+++|+. ..|.+.+.. .+..|
T Consensus 111 ~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~ 175 (284)
T PRK12549 111 WSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARF 175 (284)
T ss_pred HHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhC
Confidence 34677788766667888999999999999999888865 365 679999985 233222221 11111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCCC
Q 007782 393 AH-EHEPVNNLLDAVKVIKPTILIGSSGVG 421 (590)
Q Consensus 393 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~~ 421 (590)
.. ......++.+.++. +|++|.++..|
T Consensus 176 ~~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 176 PAARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CCeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 10 01112345555654 89999988655
No 45
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.43 E-value=0.079 Score=51.20 Aligned_cols=54 Identities=33% Similarity=0.464 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 309 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 309 TaaV~LAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||+.+++.+..+++..|.++++.+++++|+ |..|..++..+... | .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 778888888888888899999999999997 99888888877642 3 368888765
No 46
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.43 E-value=0.051 Score=49.84 Aligned_cols=108 Identities=21% Similarity=0.308 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 394 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~ 394 (590)
.|+.+|++..+.++++.+++|+|+|..|..+++.+... | -.+++++|++ .+ ......+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~---~~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LE---KAKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HH---HHHHHHHHHhh
Confidence 58899999988889999999999998888888777532 3 1578888864 11 12222222221
Q ss_pred c--cCCCCCHHHHhcccCCcEEEeccCCCC------CCCHHHHHHHHcCCCCcEEEecC-CCC
Q 007782 395 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPT 448 (590)
Q Consensus 395 ~--~~~~~~L~e~V~~vkPtvLIG~S~~~g------~Ft~evv~~Ma~~~erPIIFaLS-NPt 448 (590)
. .....++.++++. +|++|-+...+- .|.+.. ..+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~------~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL------LKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH------cCCCCEEEEcCcCCC
Confidence 1 0123466676654 899997765442 132221 24666777775 454
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.80 E-value=0.1 Score=56.28 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=63.6
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc----cCCCCCHH
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 403 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~~L~ 403 (590)
+...+++|+|+|.+|.++++.+... |. ++.++|++ ..| +......|... ..+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999888642 52 48888874 111 22222222211 11123578
Q ss_pred HHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 007782 404 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN 446 (590)
Q Consensus 404 e~V~~vkPtvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN 446 (590)
++++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 8999987633 4468999999985 5678887774
No 48
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.63 E-value=0.17 Score=54.46 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=72.7
Q ss_pred chHHHHHHHHcCCCceeccCCCchHHHHHHH--HHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh
Q 007782 286 HNAFELLAKYGTTHLVFNDDIQGTASVVLAG--VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 363 (590)
Q Consensus 286 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAg--ll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~ee 363 (590)
..||..=.|-|.+.- | |+++|.++. ...+ +.. .+|++.|++++|||..|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~-----I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG-----A-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcC-----C-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 455555556664321 1 344444443 3333 333 56999999999999998777777654 364
Q ss_pred hcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHH-HHhc-ccCCcEEEec----cCCCCCCCHHHHHHHHcCCC
Q 007782 364 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL-DAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNE 437 (590)
Q Consensus 364 A~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~-e~V~-~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~e 437 (590)
++|+++.+.-. + .+|.. +. +++. ..+.||+|-. +++....|.+.++.. .+
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PD 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cC
Confidence 67998887631 1 22221 10 1111 1358999963 444457788776542 22
Q ss_pred CcEEEecCCCCC
Q 007782 438 KPLILALSNPTS 449 (590)
Q Consensus 438 rPIIFaLSNPt~ 449 (590)
| ++|=||+|-.
T Consensus 255 r-~~iDLAvPRd 265 (338)
T PRK00676 255 R-IVFDFNVPRT 265 (338)
T ss_pred c-EEEEecCCCC
Confidence 4 9999999984
No 49
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.54 E-value=0.08 Score=54.91 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCC--CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhh
Q 007782 315 AGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 392 (590)
Q Consensus 315 Agll~A~r~~g~--~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f 392 (590)
.|++.+++..+. ++++++++++|||.||-.|+-.|.. .|. ++|+++++. .+|.+.|.+ .|
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt----~~ka~~La~---~~ 169 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN----PDKLSRLVD---LG 169 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC----HHHHHHHHH---Hh
Confidence 456777776663 6889999999999998888777654 365 789999874 222222321 12
Q ss_pred cccc--CCCC---CHHHHhcccCCcEEEeccCCCCCCCHHH
Q 007782 393 AHEH--EPVN---NLLDAVKVIKPTILIGSSGVGRTFTKEV 428 (590)
Q Consensus 393 A~~~--~~~~---~L~e~V~~vkPtvLIG~S~~~g~Ft~ev 428 (590)
.... .... .+.+++. ++|++|.++..+-.++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~ 208 (282)
T TIGR01809 170 VQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVD 208 (282)
T ss_pred hhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHH
Confidence 1100 0111 2333443 4899999988775444443
No 50
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.28 E-value=0.11 Score=53.09 Aligned_cols=130 Identities=22% Similarity=0.298 Sum_probs=88.0
Q ss_pred CCCchHHHHHHHHHHHHHHhCCC-CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC
Q 007782 305 DIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 383 (590)
Q Consensus 305 DiQGTaaV~LAgll~A~r~~g~~-l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~ 383 (590)
--+-||-=+..++-.+++..|.. +++.|++|-|.|..|...|+.+.+. |. +=+-+.|++|.|++..+-
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gl 74 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGL 74 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEE
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCc
Confidence 34567777888888999996666 9999999999999999999999764 52 345667888888865421
Q ss_pred CCchhchhhccccCCCCCHH-----------H--HhcccCCcEEEeccCCCCCCCHHHHH-HHHcCCCCcEEEecCC-CC
Q 007782 384 SLQHFKKPWAHEHEPVNNLL-----------D--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN-PT 448 (590)
Q Consensus 384 ~l~~~k~~fA~~~~~~~~L~-----------e--~V~~vkPtvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIFaLSN-Pt 448 (590)
+.+...+...+.......+. + .+-.++.||||=+ +.++.+|++.+. .+. +.-+||.--+| |+
T Consensus 75 d~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~p~ 151 (244)
T PF00208_consen 75 DVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSSSB
T ss_pred hHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcchhc
Confidence 11111111111111011111 1 4455799999988 667899999998 674 34789999999 55
No 51
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.26 E-value=0.31 Score=47.56 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=74.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 307 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 307 QGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 366666666666 5788999999999999999999999998653 5 356666553
Q ss_pred hhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 007782 387 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 460 (590)
Q Consensus 387 ~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~ 460 (590)
|.+.-=|. +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ..-|+.-+..-+
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 22211121 22234579999986 99999999988899999999995 5556554443 236777665443
No 52
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.22 E-value=0.093 Score=57.84 Aligned_cols=105 Identities=20% Similarity=0.352 Sum_probs=67.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhc-CCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCC-----CCCHH
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 403 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~-G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 403 (590)
.||+|+||||+ -.-.|+..+.+.. .++ -+.|||+|-+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 4444445444322 342 4789999976 44422122222223222 112 25899
Q ss_pred HHhcccCCcEEEe--------------------------ccCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCC
Q 007782 404 DAVKVIKPTILIG--------------------------SSGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 404 e~V~~vkPtvLIG--------------------------~S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt 448 (590)
||++. +|.+|- +.|.||.|. .++++.|.++|+.-+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~ 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH
Confidence 99988 887772 234445544 38999999999999999999998
No 53
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.16 E-value=0.068 Score=45.50 Aligned_cols=95 Identities=13% Similarity=0.250 Sum_probs=63.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-cCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lv-D~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+.+.++.|.... -..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQA-TADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEE-ESEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhcccc-ccCChHHhhcc--
Confidence 789999999999999888764 54 34677755 543 222344444432110 01268899995
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007782 411 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 447 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 447 (590)
+|++| ++-.+ ..-+++++.+....+..+|..++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 89887 55544 4567788888667788999988886
No 54
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.12 E-value=0.47 Score=50.03 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-+|++..++..+.+|++.+++++|-|. .|..+|.+|.. .| ..+.+|+++
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC--------------
Confidence 4668888999999999999999999999998 99999998864 24 246677653
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 445 (590)
.++|.+.+++ .|++|-..|.++.|+.++|+ +.-+|+=..
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888987 99999999999999999886 566776555
No 55
>PRK05086 malate dehydrogenase; Provisional
Probab=93.93 E-value=0.31 Score=51.50 Aligned_cols=105 Identities=22% Similarity=0.264 Sum_probs=67.1
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCCCCCHHHHhcc
Q 007782 331 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKV 408 (590)
Q Consensus 331 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~ 408 (590)
.||+|+|| |..|..+|.++... .+. ...+.++|++-. ..+..-++.+. .....- .....++.++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 38999999 99999999887432 122 256889997522 11110012211 000000 0012467788876
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 409 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 409 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
.|++|=+.|.+ |. ..++++++|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888666653 21 5578999999999999999999998
No 56
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.82 E-value=0.047 Score=51.09 Aligned_cols=104 Identities=22% Similarity=0.384 Sum_probs=65.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-CcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 409 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 409 (590)
||.|+|| |..|..+|-+|+.. |+ -+.|.|+|.+ .... +..-+|.+..-+.-+...-..+..++++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~- 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD- 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc-
Confidence 8999999 99999999988763 55 3559999987 2111 11111332221111111111256677776
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 410 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 410 kPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
.|++|=+.+.+ |- +-+++.+.+++++...+++-.|||.
T Consensus 70 -aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 -ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp -ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred -ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 89998555543 21 2246777788899999999999997
No 57
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.47 E-value=0.39 Score=54.31 Aligned_cols=182 Identities=16% Similarity=0.207 Sum_probs=94.1
Q ss_pred hcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCC-chHHHHHHHHcCCCceeccCCCchHHHHHH
Q 007782 237 QLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN-HNAFELLAKYGTTHLVFNDDIQGTASVVLA 315 (590)
Q Consensus 237 ~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~-~~Af~lL~ryr~~~~~FNDDiQGTaaV~LA 315 (590)
.|.++-.++|+-|+-.. .++++.+. ++ .=.+|-+|.+-. .+|. +.+..--+..|-|=-||..|
T Consensus 82 ~l~~g~~li~~l~p~~~----~~l~~~l~----~~--~it~ia~e~vpr~sraq------~~d~lssma~IAGy~Av~~a 145 (509)
T PRK09424 82 LLREGATLVSFIWPAQN----PELLEKLA----AR--GVTVLAMDAVPRISRAQ------SLDALSSMANIAGYRAVIEA 145 (509)
T ss_pred hcCCCCEEEEEeCcccC----HHHHHHHH----Hc--CCEEEEeecccccccCC------CcccccchhhhhHHHHHHHH
Confidence 45566677777776322 23333332 21 234566666532 1111 11223334455565555544
Q ss_pred HHHHHHHHhC-----CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCC---C--
Q 007782 316 GVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS---L-- 385 (590)
Q Consensus 316 gll~A~r~~g-----~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~---l-- 385 (590)
+-.-..-..| ......|++|+|||.+|++.+..... .| | +++.+|.+ ..|.+. +
T Consensus 146 a~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aeslGA 209 (509)
T PRK09424 146 AHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESMGA 209 (509)
T ss_pred HHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHcCC
Confidence 4322111111 13458999999999999888766543 26 3 37777764 111100 0
Q ss_pred ----------chhchhhccccCCC------CCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEec
Q 007782 386 ----------QHFKKPWAHEHEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILAL 444 (590)
Q Consensus 386 ----------~~~k~~fA~~~~~~------~~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaL 444 (590)
......|++...+. ..+.+.++ +.|++|.+++.+| +++++.++.|. +.-+|.=+
T Consensus 210 ~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdv 284 (509)
T PRK09424 210 EFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDL 284 (509)
T ss_pred eEEEeccccccccccchhhhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEE
Confidence 00111233321110 01122222 4999999999876 67999999996 55566667
Q ss_pred CCCC-CCCCCCH
Q 007782 445 SNPT-SQSECTA 455 (590)
Q Consensus 445 SNPt-~~aEctp 455 (590)
+.+. ..+|++.
T Consensus 285 g~~~GG~~e~t~ 296 (509)
T PRK09424 285 AAENGGNCELTV 296 (509)
T ss_pred ccCCCCCccccc
Confidence 7753 3345553
No 58
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.38 E-value=0.16 Score=51.77 Aligned_cols=126 Identities=21% Similarity=0.316 Sum_probs=78.1
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc--cCCCCCHHHHhccc
Q 007782 333 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 409 (590)
Q Consensus 333 iv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~--~~~~~~L~e~V~~v 409 (590)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+....+|.+...++ .. -....++.++++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 579999 99999999887653 41 123689999986411111111233332222 11 1113567888987
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 007782 410 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 472 (590)
Q Consensus 410 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt--~G~aifAsGS 472 (590)
.|++|=+.+.++. .-+++.+.|.++++..+++-.|||. .....-+++++ .-.-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 8988865555432 2468888999999999999999997 34444555553 2233666664
No 59
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.26 E-value=0.15 Score=56.19 Aligned_cols=125 Identities=14% Similarity=0.260 Sum_probs=74.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHH-hcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCC-----CCCHH
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 403 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~-~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 403 (590)
.||+|+||||. -..+++ ..+.+ ...+ ..+.|||+|-+- ..|-+.+...-+.+.+. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~--~tp~li-~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELI-EGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHH-HHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999996 333444 44433 2333 247899999862 22211111111122221 111 25899
Q ss_pred HHhcccCCcEEEeccCCCC--------------------------C--------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 007782 404 DAVKVIKPTILIGSSGVGR--------------------------T--------FTKEVIEAMASFNEKPLILALSNPTS 449 (590)
Q Consensus 404 e~V~~vkPtvLIG~S~~~g--------------------------~--------Ft~evv~~Ma~~~erPIIFaLSNPt~ 449 (590)
||++. +|.+|=.-.+|| . .=.++++.|.++|+.-+|+=.|||..
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ 148 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG 148 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH
Confidence 99987 788774444443 1 12378888999999999999999983
Q ss_pred CCCCCHHHHhcccCCcEEEecC
Q 007782 450 QSECTAEEAYTWSKGRAIFASG 471 (590)
Q Consensus 450 ~aEctpedA~~wt~G~aifAsG 471 (590)
+..+-+++++.-| +|.+|
T Consensus 149 ---ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 149 ---IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred ---HHHHHHHHhccCC-EEeeC
Confidence 4445556667444 55443
No 60
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.22 E-value=0.13 Score=50.68 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=33.6
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 478899999999999999999988764 76 799999997
No 61
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.07 E-value=0.35 Score=51.03 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-+|++.=++..+.+++++++|++|.| ..|.-+|.++.. .|. .+.+++++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC--------------
Confidence 346778888888999999999999999999 999999999864 253 35555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|...+.++.+++++|+
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1246788887 99999999999999999995
No 62
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.99 E-value=0.19 Score=51.77 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 5799999999999999988653 5 358888875
No 63
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.98 E-value=3 Score=43.22 Aligned_cols=121 Identities=19% Similarity=0.271 Sum_probs=65.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhh----c---c---------
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW----A---H--------- 394 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f----A---~--------- 394 (590)
+||.|+|+|..|.+||..++.. |. +++++|.+- +.++..+... . .
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVME-------GALERARGVIERALGVYAPLGIASAGMG 65 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECCH-------HHHHHHHHHHHHHHHHhhhcccHHHHhh
Confidence 5899999999999999988653 53 588888641 1122211110 0 0
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCC
Q 007782 395 EHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 473 (590)
Q Consensus 395 ~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSP 473 (590)
......++.++++. .|++| ++-.... -.+++++.+....+.-.|+. ||..+. +.++.-++.....-|..+-|
T Consensus 66 ~i~~~~~~~~~~~~--aDlVi-~av~~~~~~~~~v~~~l~~~~~~~~ii~-s~tsg~---~~~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 66 RIRMEAGLAAAVSG--ADLVI-EAVPEKLELKRDVFARLDGLCDPDTIFA-TNTSGL---PITAIAQAVTRPERFVGTHF 138 (311)
T ss_pred ceEEeCCHHHHhcc--CCEEE-EeccCcHHHHHHHHHHHHHhCCCCcEEE-ECCCCC---CHHHHHhhcCCcccEEEEcc
Confidence 00112467777775 67776 3433321 35667777766555444443 443332 24455555433333444556
Q ss_pred CCcc
Q 007782 474 FDPF 477 (590)
Q Consensus 474 F~pv 477 (590)
|.|.
T Consensus 139 ~~p~ 142 (311)
T PRK06130 139 FTPA 142 (311)
T ss_pred CCCC
Confidence 6655
No 64
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.92 E-value=0.35 Score=50.53 Aligned_cols=126 Identities=14% Similarity=0.207 Sum_probs=75.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-CCCCCHHHHhcccC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 410 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~vk 410 (590)
||.|+|+|.+|..+|..++. .|+ ..+|.++|++-=..++-..+|.+......... -...+. +.++ .
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~--~ 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCK--D 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhC--C
Confidence 89999999999999998764 265 35799999852211111111221110000000 011234 3455 4
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEecCCC
Q 007782 411 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGSP 473 (590)
Q Consensus 411 PtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G--~aifAsGSP 473 (590)
.|++|=+++.+.. .=+++.+.|.+++..-+|+-.|||.. +...-++++++= +-||++|.-
T Consensus 69 aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 9999988776521 12577888889999999999999983 444445544311 236777654
No 65
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.87 E-value=1.6 Score=46.48 Aligned_cols=153 Identities=10% Similarity=0.174 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceeccC-C--CchHHHHHHHHHHHHHH---------------
Q 007782 262 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD-I--QGTASVVLAGVVAALKL--------------- 323 (590)
Q Consensus 262 defv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDD-i--QGTaaV~LAgll~A~r~--------------- 323 (590)
.|++++..+. |-+ +|+.-=-+-.| .++-.--+..+.+.|-- . +.+|=-+++.+|+.+|-
T Consensus 59 ~~~l~~~~~~-~lk-~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNEL-GIK-QIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhhc-Cce-EEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 4666665541 111 25544333333 34433334677777742 2 34555678888876652
Q ss_pred ----hCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCC
Q 007782 324 ----IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV 399 (590)
Q Consensus 324 ----~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~ 399 (590)
.|..|.+++|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . ... ..++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---ccc
Confidence 23468899999999999999999998533 253 688888642 1 001 1111 123
Q ss_pred CCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007782 400 NNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSN 446 (590)
Q Consensus 400 ~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSN 446 (590)
.+|.|+++. .|+++=.. ...++|+++.++.|. +..++.=.|.
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR 237 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR 237 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC
Confidence 579999986 89888442 123577888888885 5667776665
No 66
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.80 E-value=0.31 Score=50.74 Aligned_cols=38 Identities=11% Similarity=-0.136 Sum_probs=29.0
Q ss_pred eCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHH
Q 007782 484 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEA 521 (590)
Q Consensus 484 ~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~a 521 (590)
..||+..|-+.++.+.=++.++..--++.+-+..+...
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35678888888888888888888777887777766543
No 67
>PRK08328 hypothetical protein; Provisional
Probab=92.72 E-value=0.062 Score=54.23 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=73.7
Q ss_pred HHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE
Q 007782 292 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 371 (590)
Q Consensus 292 L~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lv 371 (590)
++||..++..|..+. -.+|++.||+++|+|..|.-||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877766665421 2457789999999999999999999765 76 789999
Q ss_pred cCCCcccCCCcCCCchhchhhccccCCC----CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCC
Q 007782 372 DSKGLIVSSRKDSLQHFKKPWAHEHEPV----NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSN 446 (590)
Q Consensus 372 D~~GLv~~~R~~~l~~~k~~fA~~~~~~----~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSN 446 (590)
|.+= +.. .+|..+ --|-.+.-.. ....+.++...|++.|=... +.++++-+...- .+..+|| +.-|
T Consensus 58 D~D~-ve~---sNL~Rq-~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l--~~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQT-PEL---SNLNRQ-ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVL--KGVDVIVDCLDN 128 (231)
T ss_pred cCCc-cCh---hhhccc-cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHH--hcCCEEEECCCC
Confidence 9872 221 234431 1111111110 12345567788998876533 346776555433 2445666 5567
Q ss_pred CCC
Q 007782 447 PTS 449 (590)
Q Consensus 447 Pt~ 449 (590)
+.+
T Consensus 129 ~~~ 131 (231)
T PRK08328 129 FET 131 (231)
T ss_pred HHH
Confidence 653
No 68
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.62 E-value=0.61 Score=49.77 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=69.0
Q ss_pred CccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhh-ccccCCCCCHHHH
Q 007782 328 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDA 405 (590)
Q Consensus 328 l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f-A~~~~~~~~L~e~ 405 (590)
++-.||+|.|| |..|..+|..|+. .|+ ...+.|+|.+ .. .+-.-+|.+....+ -+......+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 44569999999 9999999987752 243 3679999983 21 11111233211110 0111111234788
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 406 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 406 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
++. .|++|=+.|.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 887 8988855555322 4568899999999999999999999
No 69
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.58 E-value=0.16 Score=50.38 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=66.9
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC--CCCCHH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLL 403 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~--~~~~L~ 403 (590)
.+|++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+=+ .. .+|+.+ ..+..+.. ....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP---SNLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc---cccccc-cCChhhCCCHHHHHHH
Confidence 458899999999999999999999764 76 78999999833 22 235542 21221111 112466
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCCCCCC
Q 007782 404 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPTSQSEC 453 (590)
Q Consensus 404 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt~~aEc 453 (590)
+.++.+.|++-|-. ...-++++-+...-+ .--+|+ +.-||..+.+.
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 77777888865433 233567766655432 233544 55676655443
No 70
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.48 E-value=0.27 Score=51.47 Aligned_cols=50 Identities=30% Similarity=0.375 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 314 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 314 LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
-.|++.+++..+.++++.+++++|||-|+-+|+-.+.. .|+ ++|+++++.
T Consensus 108 ~~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 108 GTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34677888888889999999999999998877666643 365 689999984
No 71
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.43 E-value=1 Score=42.65 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhCCCCccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc
Q 007782 311 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 389 (590)
Q Consensus 311 aV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k 389 (590)
-.+..|++.-++..|.++++++++++|.+. .|--+|.+|. + .|. .+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~ga-------tV~~~~~~t-------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DGA-------TVYSCDWKT-------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CCC-------EEEEeCCCC--------------
Confidence 357788899999999999999999999864 4444444443 3 353 466666531
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 390 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 390 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
++|.+++++ +|++|-..+.++.|+.|+|+
T Consensus 63 ----------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 ----------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred ----------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 267889987 99999999999999999987
No 72
>PLN02928 oxidoreductase family protein
Probab=92.28 E-value=1.1 Score=47.99 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=86.3
Q ss_pred CchHHHHHHHHHHHHHH----------------hCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEE
Q 007782 307 QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 370 (590)
Q Consensus 307 QGTaaV~LAgll~A~r~----------------~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~l 370 (590)
+.+|--+++.+|+.+|- .+..|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34556666666666653 24579999999999999999999998643 64 5777
Q ss_pred EcCCCcccCCCcCCCchhc----hhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEE
Q 007782 371 VDSKGLIVSSRKDSLQHFK----KPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLIL 442 (590)
Q Consensus 371 vD~~GLv~~~R~~~l~~~k----~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF 442 (590)
+|+.. .......+. ++ ..+........+|.|+++. .|+++-.- ...++|+++.+..|. +..+|.
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 88741 010000000 00 0111111134689999987 89998542 234799999999995 566777
Q ss_pred ecCCCCCCCCCCHHHHhc--ccCCcEEEe
Q 007782 443 ALSNPTSQSECTAEEAYT--WSKGRAIFA 469 (590)
Q Consensus 443 aLSNPt~~aEctpedA~~--wt~G~aifA 469 (590)
=.|. .++--|+|+- ...|+.-.|
T Consensus 260 NvaR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 260 NIAR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred ECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 6664 4555554442 135665443
No 73
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.21 E-value=1.9 Score=48.36 Aligned_cols=152 Identities=14% Similarity=0.210 Sum_probs=81.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh------------chhhccc--c
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 396 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~------------k~~fA~~--~ 396 (590)
.||-|+|+|..|.+||..++.. |. ++.++|..- +..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHP----EAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCH----HHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999998753 64 577888741 110111100 0001110 1
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEecCCC
Q 007782 397 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 473 (590)
Q Consensus 397 ~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt--~G~aifAsGSP 473 (590)
....++.|+++. .|++| .+..... +.+++.+.+.+..+.-.|+..|--. .+ +++.-+.. .|+++.+ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123578899987 78887 4444432 4555666666555555666544322 22 33333322 4454444 68
Q ss_pred CCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007782 474 FDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 527 (590)
Q Consensus 474 F~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~ 527 (590)
|.|+.+. | .+.+++....+++.+.. +..+.+.+-
T Consensus 140 ~nP~~~~---------------~----Lvevv~g~~t~~e~~~~-~~~~~~~lG 173 (495)
T PRK07531 140 YNPVYLL---------------P----LVELVGGGKTSPETIRR-AKEILREIG 173 (495)
T ss_pred CCCcccC---------------c----eEEEcCCCCCCHHHHHH-HHHHHHHcC
Confidence 8887422 2 22344555556666554 444444443
No 74
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.09 E-value=0.32 Score=51.47 Aligned_cols=127 Identities=15% Similarity=0.266 Sum_probs=76.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCCCCCHHHHhcc
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKV 408 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~ 408 (590)
..||.|+|||..|..+|-+|+. .|+ .+.|.|+|.+-=..++-.-+|.+.. +|-+. .-...+. +.+++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~ 73 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD 73 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC
Confidence 3599999999999999998764 365 3679999974211111111133222 22111 0011344 45665
Q ss_pred cCCcEEEeccCCCCC--CC------------HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 007782 409 IKPTILIGSSGVGRT--FT------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 472 (590)
Q Consensus 409 vkPtvLIG~S~~~g~--Ft------------~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt--~G~aifAsGS 472 (590)
.|++|=+.+.+.. -| +++++.|.+++...+|+-.|||. +....-+++++ .-+=+|++|.
T Consensus 74 --adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt 148 (315)
T PRK00066 74 --ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGT 148 (315)
T ss_pred --CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCc
Confidence 8999866665321 11 46788888999999999999998 34444555554 2233666654
Q ss_pred C
Q 007782 473 P 473 (590)
Q Consensus 473 P 473 (590)
-
T Consensus 149 ~ 149 (315)
T PRK00066 149 S 149 (315)
T ss_pred h
Confidence 3
No 75
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=92.09 E-value=0.98 Score=45.41 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhC---------CCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q 007782 312 VVLAGVVAALKLIG---------GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR 381 (590)
Q Consensus 312 V~LAgll~A~r~~g---------~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R 381 (590)
+|-.|++-=++..+ .++++++++++|-+ ..|.-+|.||.. .| -.+.+||++|.....+
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~~ 102 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFTR 102 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCccccccc
Confidence 34455555555554 48999999999987 467778777754 24 3588999999888666
Q ss_pred cCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHH
Q 007782 382 KDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 430 (590)
Q Consensus 382 ~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~ 430 (590)
..++.+.+.+. .....+|.|.+++ +|++|-..|.++. ++.|+|+
T Consensus 103 ~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 103 GESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred ccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 43332211100 0111248899987 9999999999998 8999997
No 76
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.78 E-value=0.35 Score=50.54 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.|++.+++..+.++++.+++++|||-|+-+|+-.|.+ .|. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 4567777765557888999999999999998877764 365 689999874
No 77
>PRK08223 hypothetical protein; Validated
Probab=91.63 E-value=0.32 Score=51.33 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=45.3
Q ss_pred HHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcE
Q 007782 289 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 368 (590)
Q Consensus 289 f~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i 368 (590)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|..|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6667777666655543322 568899999999999999999998875 76 789
Q ss_pred EEEcCCC
Q 007782 369 CLVDSKG 375 (590)
Q Consensus 369 ~lvD~~G 375 (590)
.++|.+=
T Consensus 55 ~lvD~D~ 61 (287)
T PRK08223 55 TIADFDV 61 (287)
T ss_pred EEEeCCC
Confidence 9999883
No 78
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.57 E-value=1.4 Score=48.19 Aligned_cols=169 Identities=12% Similarity=0.096 Sum_probs=102.7
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 007782 297 TTHLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 373 (590)
Q Consensus 297 ~~~~~FNDDi---QGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~ 373 (590)
..+.+.|--- +..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 4555555432 2234456899999999999999999999999999999999998643 65 5777886
Q ss_pred CCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEe---cc-----CCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007782 374 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG---SS-----GVGRTFTKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 374 ~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG---~S-----~~~g~Ft~evv~~Ma~~~erPIIFaLS 445 (590)
.. .. . . ......+|.|+++. .|+++= ++ ..-++|+++.+..|. +..++.=.|
T Consensus 148 ~~------~~-~-~-------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~a 207 (381)
T PRK00257 148 PR------QE-A-E-------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINAS 207 (381)
T ss_pred cc------cc-c-c-------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECC
Confidence 31 00 0 0 01123579999886 787761 11 134799999999996 667887666
Q ss_pred CCCCCCCCCHHHHhcc--cCCcEEEecCCCC--CcceeCCeeeCcCCCcccccchhhhHHHHHhC
Q 007782 446 NPTSQSECTAEEAYTW--SKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISG 506 (590)
Q Consensus 446 NPt~~aEctpedA~~w--t~G~aifAsGSPF--~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~ 506 (590)
. -++--++|+.. ..|+...|.=-=| +|. .+... ...|..+-|=++-....++
T Consensus 208 R----G~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L----~~~nvi~TPHiAg~s~e~~ 263 (381)
T PRK00257 208 R----GAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLEL----ADLCTIATPHIAGYSLDGK 263 (381)
T ss_pred C----CcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhh----hhCCEEEcCccccCCHHHH
Confidence 5 44444444421 2444332211111 111 11111 1137788887775555444
No 79
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.37 E-value=1.1 Score=51.01 Aligned_cols=162 Identities=22% Similarity=0.228 Sum_probs=107.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHh
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAV 406 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 406 (590)
.+--++|+|.|..|+|||.-++. .|+ ++.||+++-+= |++|..+|-+--..|+.. -+.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHHH
Confidence 56789999999999999998865 387 57889988775 466655676666677653 1222234555
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeee
Q 007782 407 KVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 484 (590)
Q Consensus 407 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 484 (590)
+. .+++..+|-|. +-|.+||..+=+
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~------------------------------------ 104 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL------------------------------------ 104 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc------------------------------------
Confidence 43 47788888665 444566554420
Q ss_pred CcCCCcccccchhhhHHHHHhCC-ccc--CHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHc
Q 007782 485 VPGQANNAYIFPGFGLGLVISGA-IRV--HDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 561 (590)
Q Consensus 485 ~p~Q~NN~yiFPGiglG~l~s~a-~~I--td~M~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~ 561 (590)
---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++.+..+..||.-.. .+ ++...++++.|.+.
T Consensus 105 ----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~~ 177 (532)
T COG0578 105 ----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAEH 177 (532)
T ss_pred ----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHhc
Confidence 0125678899999999993 232 22233335666766777776766888997653 32 26667888888888
Q ss_pred CC
Q 007782 562 GV 563 (590)
Q Consensus 562 G~ 563 (590)
|-
T Consensus 178 Ga 179 (532)
T COG0578 178 GA 179 (532)
T ss_pred cc
Confidence 84
No 80
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=91.33 E-value=0.37 Score=53.47 Aligned_cols=130 Identities=17% Similarity=0.271 Sum_probs=77.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh-cCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCC-----CCCHH
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 403 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~-~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 403 (590)
.||+|+||||+ -.-.|+..+.+. ..++ -+.|+|+|-+. +|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 38999999996 555555555442 2342 47899999863 3322122222222222 112 25799
Q ss_pred HHhcccCCcEEE---------------------ec-----cCCCCCC--------CHHHHHHHHcCCCCcEEEecCCCCC
Q 007782 404 DAVKVIKPTILI---------------------GS-----SGVGRTF--------TKEVIEAMASFNEKPLILALSNPTS 449 (590)
Q Consensus 404 e~V~~vkPtvLI---------------------G~-----S~~~g~F--------t~evv~~Ma~~~erPIIFaLSNPt~ 449 (590)
||++. +|.+| |+ .|.||.| -.++++.|.+.|+.-+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99987 77777 22 1334433 258888999999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEecCCCCC
Q 007782 450 QSECTAEEAYTWSKGRAIFASGSPFD 475 (590)
Q Consensus 450 ~aEctpedA~~wt~G~aifAsGSPF~ 475 (590)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4444322111334465544555554
No 81
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.12 E-value=0.92 Score=47.99 Aligned_cols=126 Identities=21% Similarity=0.345 Sum_probs=76.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCHHHH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 405 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~---~~~~~L~e~ 405 (590)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 45699999999999999988764 254 24999997521111110012222 1111110 1124565 6
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 007782 406 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 469 (590)
Q Consensus 406 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~--G~aifA 469 (590)
++. .|++|=+.+.+.. +-+++.+.|.++++.-+++=.|||. ......+.++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 666 8988866655432 2348899999999999888889998 233445555542 133676
Q ss_pred cCC
Q 007782 470 SGS 472 (590)
Q Consensus 470 sGS 472 (590)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 664
No 82
>PRK15076 alpha-galactosidase; Provisional
Probab=91.08 E-value=0.5 Score=52.20 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=73.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC---C-Cchhchhhccc--cCCCCCHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---S-LQHFKKPWAHE--HEPVNNLLD 404 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~---~-l~~~k~~fA~~--~~~~~~L~e 404 (590)
.||.|+|||+.| .+..++..+....++ +-..++|+|.+- +|.+ . +.......... -.-..++.+
T Consensus 2 ~KIaIIGaGsvg--~~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTV--FTKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHH--hHHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 589999999985 333343333322234 235899999752 2211 0 11110111000 011257888
Q ss_pred HhcccCCcEEEeccCCCCCC-------------------------------------CHHHHHHHHcCCCCcEEEecCCC
Q 007782 405 AVKVIKPTILIGSSGVGRTF-------------------------------------TKEVIEAMASFNEKPLILALSNP 447 (590)
Q Consensus 405 ~V~~vkPtvLIG~S~~~g~F-------------------------------------t~evv~~Ma~~~erPIIFaLSNP 447 (590)
+++. .|++|=+.+++|.- -.++++.|.++++..+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8876 78777555554311 14778888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecC-CCCC
Q 007782 448 TSQSECTAEEAYTWSKGRAIFASG-SPFD 475 (590)
Q Consensus 448 t~~aEctpedA~~wt~G~aifAsG-SPF~ 475 (590)
.. +..+-++.+++ .-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCCC-CCEEEECCCHHH
Confidence 82 22222334533 4477777 6643
No 83
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.00 E-value=0.49 Score=49.26 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=42.1
Q ss_pred CCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 298 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 298 ~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+..=+|-| ..|++.+++..+..++++++||+|||-+|-+||..+.. .|. ++|+++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34556666 45678888877778899999999998666666655543 364 679999874
No 84
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.99 E-value=0.48 Score=51.06 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=33.1
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 357889999999999999999999765 76 789999987
No 85
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.81 E-value=0.66 Score=49.24 Aligned_cols=124 Identities=18% Similarity=0.272 Sum_probs=73.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc---cCCCCCHHHHh
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDAV 406 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~---~~~~~~L~e~V 406 (590)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+... -....++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999988653 365 23999997532211111012211 111111 1112456 567
Q ss_pred cccCCcEEEeccCCCCCC-------------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--Cc
Q 007782 407 KVIKPTILIGSSGVGRTF-------------------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GR 465 (590)
Q Consensus 407 ~~vkPtvLIG~S~~~g~F-------------------t~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~--G~ 465 (590)
+. .|++|=+.+.++.- -+++++.|.+++..-+++--|||.+ .....+++.++ -+
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCChh
Confidence 65 89998665554321 2477888888998879999999982 22333444442 13
Q ss_pred EEEecC
Q 007782 466 AIFASG 471 (590)
Q Consensus 466 aifAsG 471 (590)
-+|++|
T Consensus 148 rviGlg 153 (321)
T PTZ00082 148 KVCGMA 153 (321)
T ss_pred hEEEec
Confidence 466666
No 86
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.68 E-value=0.32 Score=52.01 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=34.5
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 468899999999999999999999875 76 7899999983
No 87
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.63 E-value=0.97 Score=47.72 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAGsA-g~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.-++..|.++++++++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~-------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK-------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC--------------
Confidence 45677888899999999999999999999988 9999999864 253 45555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 ----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999998776
No 88
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.53 E-value=1.9 Score=44.94 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..||.|+|+|..|.++|..+... | .++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 5 356777764
No 89
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.51 E-value=0.61 Score=48.11 Aligned_cols=88 Identities=23% Similarity=0.323 Sum_probs=54.4
Q ss_pred HHHHHHHHHH-hCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhh
Q 007782 314 LAGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 392 (590)
Q Consensus 314 LAgll~A~r~-~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f 392 (590)
-.|++++++. .+.++++.+++++|||.+|-+++..+.. .|+ .+++++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 3456777764 5778999999999999888888877763 364 679999885 122 22222222
Q ss_pred cccc-CCC-CCHHHHhcccCCcEEEeccCCC
Q 007782 393 AHEH-EPV-NNLLDAVKVIKPTILIGSSGVG 421 (590)
Q Consensus 393 A~~~-~~~-~~L~e~V~~vkPtvLIG~S~~~ 421 (590)
.... -.. .++.+.+. +.|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~--~~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELA--DFDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhccc--cCCEEEECCcCC
Confidence 1110 011 12334454 389999887755
No 90
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.46 E-value=1 Score=47.88 Aligned_cols=92 Identities=14% Similarity=0.279 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.=++..|.++++++|+|+|.| ..|..+|.+|... | -.+++++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 356777888888999999999999999996 9999999999753 5 356666543 0
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 445 (590)
.++.|++++ .|++|=..+.++.+++++++ +.-||.=.|
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168899987 99999999989888988743 555666665
No 91
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.38 E-value=2.5 Score=46.33 Aligned_cols=116 Identities=15% Similarity=0.195 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 387 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 387 (590)
..|=-+++.+++..|..|..|.+.++.|+|.|..|-.+|+.+... |+ ++..+|.. +.+ ..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~~ 153 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--RG 153 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--cc
Confidence 455567889999888889999999999999999999999998643 65 57778752 111 00
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEE---eccC-----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh
Q 007782 388 FKKPWAHEHEPVNNLLDAVKVIKPTILI---GSSG-----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 459 (590)
Q Consensus 388 ~k~~fA~~~~~~~~L~e~V~~vkPtvLI---G~S~-----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~ 459 (590)
......+|.|++++ .|+++ -++. .-++|+++.++.|. +..|++=.|. -+.-=|+|+
T Consensus 154 -------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~AL 217 (378)
T PRK15438 154 -------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTAL 217 (378)
T ss_pred -------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHHH
Confidence 00123579999976 89887 1222 34689999999996 6778886654 555555554
No 92
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.21 E-value=0.59 Score=50.69 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=63.6
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC-c-------CCCchhchhhccc--
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-K-------DSLQHFKKPWAHE-- 395 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R-~-------~~l~~~k~~fA~~-- 395 (590)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999765 76 78999999833 2111 0 0111112111110
Q ss_pred ---cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007782 396 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 443 (590)
Q Consensus 396 ---~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 443 (590)
.+. . .++.+.+++ .|++|.++... =+.-.|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 000 1 135556655 78888766532 25556677777777888876
No 93
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.15 E-value=0.5 Score=43.21 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=31.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
+++||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcce
Confidence 478999999999999999999876 76 89999999733
No 94
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=90.15 E-value=0.63 Score=51.15 Aligned_cols=127 Identities=16% Similarity=0.224 Sum_probs=71.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc------CCCCCHHHH
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLDA 405 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~------~~~~~L~e~ 405 (590)
||.|+|||+.|.+.+- +..+.....+ +-.+++|+|.+- ++.+.+...-+.++... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999887653 1112111111 235799999752 22111111111111111 113578899
Q ss_pred hcccCCcEEEeccCCC---------------CCCC---------------------HHHHHHHHcCCCCcEEEecCCCCC
Q 007782 406 VKVIKPTILIGSSGVG---------------RTFT---------------------KEVIEAMASFNEKPLILALSNPTS 449 (590)
Q Consensus 406 V~~vkPtvLIG~S~~~---------------g~Ft---------------------~evv~~Ma~~~erPIIFaLSNPt~ 449 (590)
++. .|++|=+-..+ |+|. .++.+.|.+++++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 986 88877444322 1221 27777777888999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEecC-CCC
Q 007782 450 QSECTAEEAYTWSKGRAIFASG-SPF 474 (590)
Q Consensus 450 ~aEctpedA~~wt~G~aifAsG-SPF 474 (590)
..+ .+-+++.++ .-++.+| +|+
T Consensus 149 -~i~-t~~~~k~~~-~rviG~c~~~~ 171 (423)
T cd05297 149 -AEL-TWALNRYTP-IKTVGLCHGVQ 171 (423)
T ss_pred -HHH-HHHHHHhCC-CCEEEECCcHH
Confidence 222 223346665 4567776 543
No 95
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.00 E-value=1.2 Score=47.44 Aligned_cols=110 Identities=21% Similarity=0.162 Sum_probs=69.2
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc--ccCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 408 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL--v~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 408 (590)
||.|.|| |..|..+|..|+. .|+-.|+-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35532223347999998741 11111112443332332221111456788887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 007782 409 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPT 448 (590)
Q Consensus 409 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt 448 (590)
.|++|=+.|.+ |- .-+++++.|++++ +.-||+-.|||-
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 88888555443 31 1257788888894 999999999997
No 96
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.97 E-value=1.3 Score=46.94 Aligned_cols=84 Identities=17% Similarity=0.287 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 007782 309 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 387 (590)
Q Consensus 309 TaaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 387 (590)
=.-+|-.|++..++-.+.+|++.++|++|.|. -|-.+|.+|.. .|. .+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RNA-------TVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------EEEEEecc-------------
Confidence 34678889999999999999999999999998 99999999864 242 45666642
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 388 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 388 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1257788886 99999999999999999876
No 97
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.94 E-value=0.9 Score=47.84 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 007782 309 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 387 (590)
Q Consensus 309 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 387 (590)
=.-+|-.|++.=++..+.++++.+++++|-+ .-|--+|.++... | ..+..++++
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------- 185 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------- 185 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC-------------
Confidence 3456778888888999999999999999999 8888888887542 4 345666543
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 388 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 388 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.++. +|++|+..+.++.+|+++|+
T Consensus 186 -----------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 -----------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred -----------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 1368899987 99999999999999999983
No 98
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.91 E-value=0.94 Score=43.62 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=73.5
Q ss_pred HHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCC
Q 007782 321 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 400 (590)
Q Consensus 321 ~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~ 400 (590)
.+..+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34567889999999999999999999999743 64 6888887522 100 1111111235
Q ss_pred CHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEE
Q 007782 401 NLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAI 467 (590)
Q Consensus 401 ~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~w--t~G~ai 467 (590)
+|.|+++. .|+++=.- ..-+.|+++.++.|. +.-++.-.|. .++--|+|+-. .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999987 88887432 224799999999996 5667776555 55555544321 346544
No 99
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.80 E-value=5 Score=41.37 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5899999999999999988653 63 68888875
No 100
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.77 E-value=0.71 Score=48.60 Aligned_cols=48 Identities=38% Similarity=0.513 Sum_probs=38.8
Q ss_pred HHHHHHHHhC--CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 316 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 316 gll~A~r~~g--~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
|++.+++-.+ ...+++++|++|||-|+.+|+-.|.+. |. ++|+++++.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 5677788766 456789999999999999998888764 64 789999884
No 101
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.52 E-value=2.8 Score=47.66 Aligned_cols=185 Identities=15% Similarity=0.233 Sum_probs=94.2
Q ss_pred EEeecCCCc----hhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCcee
Q 007782 227 ITVDVGTNN----EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVF 302 (590)
Q Consensus 227 I~LDvGTnN----e~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~F 302 (590)
|+|-|..-. +.|.++-.++|+-|+-.. .++++.+ .++ .-.+|-+|.+-. + +|- .+..+|
T Consensus 67 iIlkV~~P~~~e~~~l~~g~tli~~l~p~~n----~~ll~~l----~~k--~it~ia~E~vpr-----i-sra-q~~d~l 129 (511)
T TIGR00561 67 IILKVNAPSDAEIAELPAGKALVSFIWPAQN----PELMEKL----AAK--NITVLAMDAVPR-----I-SRA-QKLDAL 129 (511)
T ss_pred EEEEeCCCCHHHHHhcCCCCEEEEEcCccCC----HHHHHHH----HHc--CCEEEEeecccc-----c-ccC-CccCcc
Confidence 555444332 445566777777775431 3333333 222 234566775531 0 111 122222
Q ss_pred c--cCCCchHHHHHHHHHHHHHHhC-----CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 303 N--DDIQGTASVVLAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 303 N--DDiQGTaaV~LAgll~A~r~~g-----~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
. ..|.|-.+|..|+-.-.-..+| ......|++|+|+|.+|+..+..+... |. ++.++|.+.
T Consensus 130 ssma~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~ 197 (511)
T TIGR00561 130 SSMANIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRP 197 (511)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCH
Confidence 2 4556666665554332222222 134568999999999999987776542 52 377777664
Q ss_pred cccCCCcCCCch------------hchhhccccCC------CCCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHH
Q 007782 376 LIVSSRKDSLQH------------FKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAM 432 (590)
Q Consensus 376 Lv~~~R~~~l~~------------~k~~fA~~~~~------~~~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~M 432 (590)
-.. .+...+.. ...-||+...+ ..-+.+.++. .|++|++.-++| +.|+++++.|
T Consensus 198 ~rl-e~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~M 274 (511)
T TIGR00561 198 EVK-EQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSM 274 (511)
T ss_pred HHH-HHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhC
Confidence 211 00000100 00112221100 0114555655 999999994443 5899999999
Q ss_pred HcCCCCcEEEecCC
Q 007782 433 ASFNEKPLILALSN 446 (590)
Q Consensus 433 a~~~erPIIFaLSN 446 (590)
.. .-+|.=||-
T Consensus 275 Kp---GsvIVDlA~ 285 (511)
T TIGR00561 275 KA---GSVIVDLAA 285 (511)
T ss_pred CC---CCEEEEeee
Confidence 73 334444443
No 102
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=89.37 E-value=2.2 Score=45.25 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc
Q 007782 316 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 395 (590)
Q Consensus 316 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~ 395 (590)
|.+++...... ...+++|+|+|..|..++..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346999999999998888877543 244 678888773 222 22222222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007782 396 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 457 (590)
Q Consensus 396 ----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEctped 457 (590)
.....++.++++. .|++|-+++. ..+|+.+.++ +.-.|.++..-+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~------~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLE------PGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------CCcEEEeeCCCCCCceecCHHH
Confidence 1123678999975 9999976543 2467777664 222444444322 256777765
No 103
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.23 E-value=0.87 Score=47.22 Aligned_cols=119 Identities=19% Similarity=0.340 Sum_probs=71.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc----c-----CCCCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----H-----EPVNN 401 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~-----~~~~~ 401 (590)
.||.|+|||..|.++|..++.. |+ . .++++|.+ .++ +......+.+. . ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 4899999999999999987642 54 2 79999983 211 11111111110 0 01234
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC---
Q 007782 402 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--- 464 (590)
Q Consensus 402 L~e~V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G--- 464 (590)
. ++++. .|++|=+.+.+ | -.-+++++.|.+.+...+++-.|||. .....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCc
Confidence 5 45665 89888333333 2 12356777788899999888889997 22223344444 3
Q ss_pred cEEEecCCCC
Q 007782 465 RAIFASGSPF 474 (590)
Q Consensus 465 ~aifAsGSPF 474 (590)
+-+|++|.-.
T Consensus 138 ~~viG~gt~l 147 (307)
T PRK06223 138 NRVIGMAGVL 147 (307)
T ss_pred ccEEEeCCCc
Confidence 4588888543
No 104
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.86 E-value=0.51 Score=50.56 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=33.9
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ .+|.++|.+-
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCc
Confidence 568899999999999999999998764 76 7899999963
No 105
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.72 E-value=0.44 Score=45.00 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=50.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhch--hhccc---cCC---CCCHH
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 403 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~--~fA~~---~~~---~~~L~ 403 (590)
||.|+|||+.|+.+|..+... | .++.|.+++.-..+ .++.... .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 799999999999999988753 4 56777776531111 1111111 11110 011 25799
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 007782 404 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 436 (590)
Q Consensus 404 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~ 436 (590)
++++. +|++| +.. +-.+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99986 77665 322 2245788999988644
No 106
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=88.57 E-value=12 Score=41.63 Aligned_cols=187 Identities=23% Similarity=0.243 Sum_probs=123.8
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCch-HH-HHHHHHcCC-----Ccee----------ccCCCchHHHH
Q 007782 251 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN-AF-ELLAKYGTT-----HLVF----------NDDIQGTASVV 313 (590)
Q Consensus 251 R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~-Af-~lL~ryr~~-----~~~F----------NDDiQGTaaV~ 313 (590)
..+-.|-.+|...|++++.+.-||+.-|-=+|++..- .. -+.+.|+.- .+|| .+----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 3567788899999999999999999999999998532 11 155666531 2222 12222344323
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhc
Q 007782 314 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 393 (590)
Q Consensus 314 LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA 393 (590)
.-+.-.|++..|.+|++.||.|-|-|.+|.-.|+.+.+. |. |=+-+=|++|-|++.. .|+..+....
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 333348888899899999999999999999888888643 53 5566778999888763 3553332211
Q ss_pred cc----------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007782 394 HE----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 460 (590)
Q Consensus 394 ~~----------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEctpedA~~ 460 (590)
++ .+...+ |.+-.+..||||=+.. ++..|++-++.+.+. +|.=-+| ||+ + .+++.+.
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~ak----~V~EgAN~P~t-~--eA~~i~~ 325 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKAK----IVVEGANGPTT-P--EADEILL 325 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhhc----EEEeccCCCCC-H--HHHHHHH
Confidence 11 111112 3344567899996655 669999999888532 8888888 774 3 3444444
No 107
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=88.33 E-value=2.8 Score=44.85 Aligned_cols=111 Identities=23% Similarity=0.196 Sum_probs=74.9
Q ss_pred CCceeccCCC---chHHHHHHHHHHHHH------------------HhCCCCccceEEEeCcChHHHHHHHHHHHHHHHh
Q 007782 298 THLVFNDDIQ---GTASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 356 (590)
Q Consensus 298 ~~~~FNDDiQ---GTaaV~LAgll~A~r------------------~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~ 356 (590)
-+.|+|-.-- ..|=-+++.+|+..| ..|..|.++++-|+|.|..|..+|+.+...
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af---- 164 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF---- 164 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC----
Confidence 4555555442 334446777787777 567789999999999999999999998654
Q ss_pred cCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHHH
Q 007782 357 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAM 432 (590)
Q Consensus 357 ~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~M 432 (590)
|+ ++..+|+. ..+. ... ........+|.+.++. .|+|.-. ...-|.++++-+..|
T Consensus 165 -gm-------~v~~~d~~----~~~~--~~~-----~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 165 -GM-------KVIGYDPY----SPRE--RAG-----VDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred -CC-------eEEEECCC----Cchh--hhc-----cccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 65 57777773 1110 000 0112234679999987 8988854 223478999999999
Q ss_pred H
Q 007782 433 A 433 (590)
Q Consensus 433 a 433 (590)
.
T Consensus 224 K 224 (324)
T COG0111 224 K 224 (324)
T ss_pred C
Confidence 4
No 108
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=88.18 E-value=0.76 Score=45.57 Aligned_cols=109 Identities=17% Similarity=0.308 Sum_probs=69.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-CC-----CCCHHHH
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNLLDA 405 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-~~-----~~~L~e~ 405 (590)
||+|+||||+-. ..++...+.+...++ .+.|+|+|.+ ..|-+.....-+.+++.. .+ ..++.||
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 799999999854 455555555444553 4689999986 333211122333333321 12 2589999
Q ss_pred hcccCCcEEE---------------------eccC-------CCCCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 007782 406 VKVIKPTILI---------------------GSSG-------VGRTFT--------KEVIEAMASFNEKPLILALSNPTS 449 (590)
Q Consensus 406 V~~vkPtvLI---------------------G~S~-------~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 449 (590)
++. +|.+| |+-+ .||.|. .|+.+.|.+.|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 89888 3322 334433 48899999999999999999998
Q ss_pred CCCCC
Q 007782 450 QSECT 454 (590)
Q Consensus 450 ~aEct 454 (590)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5554
No 109
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.05 E-value=3.2 Score=44.24 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=72.4
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHhc
Q 007782 331 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 407 (590)
Q Consensus 331 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 407 (590)
-||+|.|| |..|..+|..|+.. |+--.+....++++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 36999999 99999999987652 44100111379999985411 111100122211122111111257888898
Q ss_pred ccCCcEEEeccCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhccc
Q 007782 408 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 462 (590)
Q Consensus 408 ~vkPtvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~aEctpedA~~wt 462 (590)
. +|++|=+.+.+.. .| +++++.|.+++ ..-||+-.|||. ....--+++++
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~ 142 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYA 142 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 6 9999866655421 23 56778888885 689999999997 34444455554
No 110
>PRK14851 hypothetical protein; Provisional
Probab=87.93 E-value=1.8 Score=50.74 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=79.5
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCc-------CCCchhchhhccc---
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAHE--- 395 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~-------~~l~~~k~~fA~~--- 395 (590)
++|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|-+=+-.++-. +++-..|..-+..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 568899999999999999999998875 76 78999998733222110 0111122222211
Q ss_pred -c----------CCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC----------CCCCCCC
Q 007782 396 -H----------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS----------NPTSQSE 452 (590)
Q Consensus 396 -~----------~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS----------NPt~~aE 452 (590)
. ..+ .++.+.+++ .|++|-...-...-++..|...|..+..|+|++-. +|. .
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~---~ 182 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ---G 182 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---C
Confidence 0 111 246667765 89998554321111345677778888999999754 676 5
Q ss_pred CCHHHHhcccCC
Q 007782 453 CTAEEAYTWSKG 464 (590)
Q Consensus 453 ctpedA~~wt~G 464 (590)
...++.|.+.++
T Consensus 183 ~~~~~~~~~~~~ 194 (679)
T PRK14851 183 MGFDDYFNIGGK 194 (679)
T ss_pred CCHhHhccCCCC
Confidence 788888888777
No 111
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.76 E-value=1.7 Score=46.04 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-+|++.=++..|.+++++++|++|.+ ..|.-+|.||...-. ..| ..+..++++
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~-------------- 194 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSR-------------- 194 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCC--------------
Confidence 466778888899999999999999999986 578888888753100 012 235555542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 195 ----------t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 ----------TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358899987 99999999999999999994
No 112
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=87.65 E-value=2.6 Score=38.54 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=26.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCC
Confidence 8999999 99999999998763 343 3466788876
No 113
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.61 E-value=2.1 Score=45.30 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.-++..|.++++++++++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~-------------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK-------------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC--------------
Confidence 456778888889999999999999999985 578888888854 24 245566431
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|...+.++.|+.++|+
T Consensus 192 ----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368888987 99999999999999999995
No 114
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.49 E-value=2.1 Score=42.48 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=59.1
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhc---cc-c----CCCCCH
Q 007782 332 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 402 (590)
Q Consensus 332 riv~~G-AGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA---~~-~----~~~~~L 402 (590)
||.|+| +|..|..+|..+.+. | .+++++|++ .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 699997 899999999998653 4 467777653 111 222111111 00 0 011356
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC
Q 007782 403 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 450 (590)
Q Consensus 403 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 450 (590)
.++++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 778875 78776 44433 3457888888654344799999999853
No 115
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.27 E-value=1.2 Score=46.81 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=72.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc-c--cCCCCCHHHHhc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E--HEPVNNLLDAVK 407 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-~--~~~~~~L~e~V~ 407 (590)
.||.|+|+|..|.++|-.++.. |+ + ++.++|..--+.+++.-++.+ ...+.. . -....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 3899999999999999987642 54 2 499999832221111000110 001100 0 011246766 55
Q ss_pred ccCCcEEEeccCCC---C-C------CC----HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEecC
Q 007782 408 VIKPTILIGSSGVG---R-T------FT----KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 471 (590)
Q Consensus 408 ~vkPtvLIG~S~~~---g-~------Ft----~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~--G~aifAsG 471 (590)
. .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 4 78887554432 2 1 22 45666788899999999999998 344455555532 12367776
Q ss_pred C
Q 007782 472 S 472 (590)
Q Consensus 472 S 472 (590)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 3
No 116
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.23 E-value=2.4 Score=45.04 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=67.7
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC--CCCCHHHHhcc
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 408 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~--~~~~L~e~V~~ 408 (590)
||.|+|| |..|..+|-+|+. .|+ -+.+.|+|.+ + .++-.-+|.+-. .+.+-.. ...++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 365 3679999998 3 222211254432 1111111 11346677877
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 409 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 409 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
.|++|=+.|.+ |- .-+++++.+.++++..+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888566554 21 2246777888899999999999998
No 117
>PRK08374 homoserine dehydrogenase; Provisional
Probab=87.11 E-value=3.2 Score=44.39 Aligned_cols=104 Identities=18% Similarity=0.240 Sum_probs=63.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc---hhchhhcccc------C-
Q 007782 331 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ---HFKKPWAHEH------E- 397 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~---~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~---~~k~~fA~~~------~- 397 (590)
.+|.++|.|..|.+++++|.+ .+.++.|+.. +=+-+.|++|-+...+.-++. .+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999977 3333345321 224456999888765531121 2222222100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH-HHHcCCCCcEEE
Q 007782 398 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLIL 442 (590)
Q Consensus 398 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIF 442 (590)
...++.|.++...+||+|-+++.. ...++++ .+. +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~--~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK--NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH--HHHHHHHHHHh--hCCcEEE
Confidence 012688888877899999998633 3334444 443 5677875
No 118
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.89 E-value=2.5 Score=44.67 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 007782 309 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 387 (590)
Q Consensus 309 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 387 (590)
=.-+|-+|++.=++-.+.+++++++|++|-+ ..|.-+|.+|.. .|. .+.+++++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~------------- 190 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF------------- 190 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 3456778888889999999999999999998 889999998854 242 34444432
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 388 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 388 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 191 -----------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 191 -----------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -----------CcCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 1246778887 99999999999999999997
No 119
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=86.88 E-value=12 Score=41.26 Aligned_cols=95 Identities=25% Similarity=0.415 Sum_probs=55.1
Q ss_pred eeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHH---------HHHHhc-CCCeeeeeecCCCchHHHHHH
Q 007782 224 CLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMS---------AVKQNY-GEKVLIQFEDFANHNAFELLA 293 (590)
Q Consensus 224 ~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~---------av~~~f-Gp~~lIqfEDf~~~~Af~lL~ 293 (590)
.+|.+.+.-..=+++.+||-+. +||+.++.+++- .+.+.+ |.++.+-.||+....+|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~-- 91 (397)
T PRK04346 23 LMPALEELEEAYEKAKNDPEFQ---------AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKI-- 91 (397)
T ss_pred HHHHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHH--
Confidence 3444444444456677777542 556666655532 355566 5677788888877777754
Q ss_pred HHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEE-eCcChHHHHHHHHHHH
Q 007782 294 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF-LGAGEAGTGIAELIAL 351 (590)
Q Consensus 294 ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~-~GAGsAg~GIA~li~~ 351 (590)
| .++.-++.| +..|+ .+++. .|||..|+++|-....
T Consensus 92 --r---------------~al~~~l~A-~~~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 92 --N---------------NVLGQALLA-KRMGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred --H---------------HHHHHHHHH-HHcCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 1 122233333 33343 35666 6999988888766543
No 120
>PRK07574 formate dehydrogenase; Provisional
Probab=86.64 E-value=6.7 Score=43.08 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=74.2
Q ss_pred CCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHH
Q 007782 325 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 404 (590)
Q Consensus 325 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e 404 (590)
+..|.+++|.|+|.|..|..||+.+... |+ +++.+|+...- . + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~---~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLP---E-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCc---h-h-h---Hhhc--CceecCCHHH
Confidence 3458999999999999999999998653 64 57778875320 0 0 0 0111 1112357999
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEecC
Q 007782 405 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASG 471 (590)
Q Consensus 405 ~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~--wt~G~aifAsG 471 (590)
+++. .|+++=.- ..-++|+++.+..|. +..++.=.|. .++.-++|+. ...|+.-.|..
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaL 308 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAG 308 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEE
Confidence 9987 89887332 123689999999996 5667776665 5555554442 23566554543
No 121
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.62 E-value=2 Score=44.72 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=62.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc-C
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 410 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v-k 410 (590)
||-|+|.|..|..+|..+... | .++.+.|++ .+ ..+..+.. ......++.|.++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~---~~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QD---AVKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HH---HHHHHHHc---CCcccCCHHHHHhhcCC
Confidence 699999999999999988653 5 356666653 11 12222211 112234666666543 5
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHH
Q 007782 411 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAE 456 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~aEctpe 456 (590)
||++|= +-..+ ..+++++.++.+ .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44444 889999888765 4568999999865 444444
No 122
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.59 E-value=1.5 Score=45.69 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.|++.+++..|.+. +.++|++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45677777666653 4699999999999988877754 365 679999875
No 123
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.44 E-value=0.75 Score=46.01 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+|++.||+++|+|..|..||+.|+.. |+ .+|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 457889999999999999999999764 76 789999997
No 124
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=86.18 E-value=0.55 Score=52.30 Aligned_cols=130 Identities=18% Similarity=0.341 Sum_probs=85.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCC-----CCCH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNL 402 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~-----~~~L 402 (590)
+..||+|+||||. .-.+++...+.+...++. ..|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 4579999999998 467788887777666653 789999975 44432111122223222 122 2589
Q ss_pred HHHhcccCCcEEE---------------------e-----ccCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCC
Q 007782 403 LDAVKVIKPTILI---------------------G-----SSGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 403 ~e~V~~vkPtvLI---------------------G-----~S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt 448 (590)
.||++. +|-+| | +.++||.|. -|+++.|-+.|+.--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999987 77666 1 234455543 38999999999999999999998
Q ss_pred CCCCCCHHHHhcccCC-cEEEecCCC
Q 007782 449 SQSECTAEEAYTWSKG-RAIFASGSP 473 (590)
Q Consensus 449 ~~aEctpedA~~wt~G-~aifAsGSP 473 (590)
+++|- -+++|+.. +.|=-+=+|
T Consensus 150 --~~vTe-Av~r~~~~~K~VGlCh~~ 172 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIVGLCHGP 172 (442)
T ss_pred --HHHHH-HHHHhCCCCcEEeeCCch
Confidence 77774 34555554 444333333
No 125
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=86.17 E-value=4.3 Score=43.25 Aligned_cols=126 Identities=24% Similarity=0.327 Sum_probs=76.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc--CCCCCHHHHhcc
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 408 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 408 (590)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+. ..+-.-+|.+... ..+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~~-~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIPT-AASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCCc-CceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 254 26799999876 2222112444321 01101 011246778887
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC-CCCCCHHHHhcccCC--cEEEecC
Q 007782 409 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYTWSKG--RAIFASG 471 (590)
Q Consensus 409 vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~aEctpedA~~wt~G--~aifAsG 471 (590)
.|++|=+.+.+.. .=+++.+.+.+++..-||+-.|||.. ++.+...-++++++= +-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 8988855555421 11467777888999999999999982 222344445543210 1256665
Q ss_pred C
Q 007782 472 S 472 (590)
Q Consensus 472 S 472 (590)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 4
No 126
>PLN02306 hydroxypyruvate reductase
Probab=86.05 E-value=5.7 Score=43.54 Aligned_cols=174 Identities=17% Similarity=0.215 Sum_probs=100.1
Q ss_pred cCCCceeccCC---CchHHHHHHHHHHHHHHh---------------------CCCCccceEEEeCcChHHHHHHHHHHH
Q 007782 296 GTTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 296 r~~~~~FNDDi---QGTaaV~LAgll~A~r~~---------------------g~~l~d~riv~~GAGsAg~GIA~li~~ 351 (590)
+..+.+.|--- ..+|=-+++-+|+..|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 45677777532 223444566666665431 346889999999999999999999864
Q ss_pred HHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc--------c--cCCCCCHHHHhcccCCcEEEec----
Q 007782 352 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E--HEPVNNLLDAVKVIKPTILIGS---- 417 (590)
Q Consensus 352 ~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~--------~--~~~~~~L~e~V~~vkPtvLIG~---- 417 (590)
+| |+ +++.+|+..- . .+..+...+.. + .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 43 54 6788887421 0 01111011100 0 0112489999987 8998863
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEEEecCC-CC--CcceeCCeeeCcCCCccc
Q 007782 418 SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGS-PF--DPFEYNGKVFVPGQANNA 492 (590)
Q Consensus 418 S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~w--t~G~aifAsGS-PF--~pv~~~G~~~~p~Q~NN~ 492 (590)
...-|.|+++.++.|. +.-++.=.| +.++-=|+|+.- ..|+.-.| |- =| +|. .+. .--+..|+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i~gA-aLDVf~~EP~-~~~---~L~~~pNV 315 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPMFRV-GLDVFEDEPY-MKP---GLADMKNA 315 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCeeEE-EEeCCCCCCC-Ccc---hHhhCCCE
Confidence 2334799999999995 555666555 455555554422 24553322 21 01 111 010 11245688
Q ss_pred ccchhhhH
Q 007782 493 YIFPGFGL 500 (590)
Q Consensus 493 yiFPGigl 500 (590)
.+-|=+|-
T Consensus 316 ilTPHiag 323 (386)
T PLN02306 316 VVVPHIAS 323 (386)
T ss_pred EECCcccc
Confidence 88888763
No 127
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.95 E-value=2.8 Score=44.36 Aligned_cols=83 Identities=24% Similarity=0.372 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-+|++.=++..|.++++++++|+|. |..|.-+|.+|... |. .+.++.+ +
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s-------~------- 191 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHS-------R------- 191 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECC-------C-------
Confidence 45667778888899999999999999999 99999999999753 53 3344422 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ .|++|-..+.++.+++++++
T Consensus 192 ----------t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 192 ----------TRNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 1268889987 99999999999999998753
No 128
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=85.73 E-value=0.26 Score=47.08 Aligned_cols=89 Identities=25% Similarity=0.409 Sum_probs=49.2
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-------------CcccCCCcCCCchhchhhcc
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-------------GLIVSSRKDSLQHFKKPWAH 394 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~-------------GLv~~~R~~~l~~~k~~fA~ 394 (590)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5568999999999999999988653 53 23344432 1111 00000100 00222
Q ss_pred c----cCC--CCCHHHHhcccCCcEEEecc-----CCCCCCCHHHHHHHH
Q 007782 395 E----HEP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMA 433 (590)
Q Consensus 395 ~----~~~--~~~L~e~V~~vkPtvLIG~S-----~~~g~Ft~evv~~Ma 433 (590)
. ... ...|.+.++. .|++|+.. ..+-+||++.++.|.
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1 011 1358888876 79999743 445689999999996
No 129
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.69 E-value=2.7 Score=42.49 Aligned_cols=120 Identities=11% Similarity=0.160 Sum_probs=69.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
.||.|+|+|..|..+|..+... |. ...+++++|++. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999888643 43 124677777641 1122222222 11122466777764
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcce
Q 007782 411 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFE 478 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~ 478 (590)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|....+=+...-|..|..
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~ 122 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPAL 122 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHH
Confidence 77766 44433 45788888887554 458899999773 334444543122222345555543
No 130
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.56 E-value=3.4 Score=43.72 Aligned_cols=82 Identities=24% Similarity=0.322 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc
Q 007782 311 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 389 (590)
Q Consensus 311 aV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k 389 (590)
-+|-.|++.=++-.+.+++++++|++|.+ ..|--+|.||.. .|. .+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---------------
Confidence 44567777778889999999999999986 578888888853 242 35666543
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 390 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 390 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|...|.++.++.|+|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 131
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.48 E-value=4.2 Score=43.33 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=66.4
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHhc
Q 007782 331 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 407 (590)
Q Consensus 331 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 407 (590)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.=. .++..-+|.+..-++.+...-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887764 254100011379999985322 111111244333233221111134567777
Q ss_pred ccCCcEEEeccCCC---CCCC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 007782 408 VIKPTILIGSSGVG---RTFT------------KEVIEAMASFN-EKPLILALSNPT 448 (590)
Q Consensus 408 ~vkPtvLIG~S~~~---g~Ft------------~evv~~Ma~~~-erPIIFaLSNPt 448 (590)
. .|++|=+.+.+ | .| +++...+.+++ +.-||+-.|||-
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 6 89988555543 3 23 45677778889 499999999997
No 132
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.41 E-value=0.98 Score=45.26 Aligned_cols=104 Identities=22% Similarity=0.260 Sum_probs=61.3
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc-c-cC-CCCCH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E-HE-PVNNL 402 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-~-~~-~~~~L 402 (590)
.+|++.||+|+|+|..|.-||+.|+.. |+ ++|.++|.+= |..+ +|..+- -|.. + +. ....+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~s---NL~Rq~-l~~~~diG~~Ka~~~ 80 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV-VELS---NLQRQI-LHTEADVGQPKAEAA 80 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE-EcCc---cccccc-ccChhhCCChHHHHH
Confidence 468889999999999999999999764 76 7999999983 2222 354321 1211 1 11 11346
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 403 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 403 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
.+.++.+.|++=|=... .-++++-+...-+. -.=||-++-||.
T Consensus 81 ~~~l~~~np~~~i~~~~--~~i~~~~~~~~~~~-~DvVi~~~d~~~ 123 (228)
T cd00757 81 AERLRAINPDVEIEAYN--ERLDAENAEELIAG-YDLVLDCTDNFA 123 (228)
T ss_pred HHHHHHhCCCCEEEEec--ceeCHHHHHHHHhC-CCEEEEcCCCHH
Confidence 67777777775443222 23455444433221 122444666665
No 133
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.30 E-value=2.8 Score=44.55 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc
Q 007782 311 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 389 (590)
Q Consensus 311 aV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k 389 (590)
-+|-.|++.=++..+.+++++++||+|.+ -.|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 140 PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~--------------- 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA--------------- 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC---------------
Confidence 45666778888999999999999999986 5788888888643211 12 234444332
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 390 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 390 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 197 ---------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ---------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ---------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1358889987 99999999999999999994
No 134
>PRK06436 glycerate dehydrogenase; Provisional
Probab=85.11 E-value=8.9 Score=40.65 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=63.8
Q ss_pred CCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHH
Q 007782 325 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 404 (590)
Q Consensus 325 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e 404 (590)
+..|.++++.|+|-|..|..+|+++. ++ |+ +++.+|+... .+.. . ....+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~~r~~~-----~~~~--------~--~~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAYTRSYV-----NDGI--------S--SIYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEECCCCc-----ccCc--------c--cccCCHHH
Confidence 45799999999999999999998664 32 64 5788887521 0101 0 01247889
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 405 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 405 ~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
+++. .|+++=.- ..-++|+++.++.|. +..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 8876 88887331 224689999999996 667888777643
No 135
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.06 E-value=7 Score=41.74 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=97.3
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHH-------------------------hCCCCccceEEEeCcChHHHHHHHH
Q 007782 297 TTHLVFNDDI---QGTASVVLAGVVAALKL-------------------------IGGTLAEHRFLFLGAGEAGTGIAEL 348 (590)
Q Consensus 297 ~~~~~FNDDi---QGTaaV~LAgll~A~r~-------------------------~g~~l~d~riv~~GAGsAg~GIA~l 348 (590)
..+++.|--- +..|=-+++.+|+..|- .|..|.+++|.|+|.|..|..+|+.
T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~ 168 (333)
T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR 168 (333)
T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHH
Confidence 4666666321 22344457777776553 2456899999999999999999999
Q ss_pred HHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCC
Q 007782 349 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTF 424 (590)
Q Consensus 349 i~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~F 424 (590)
+... |+ +++.+|+.. + . .. ...+. -...+|.|+++. .|+++=.- ..-+.|
T Consensus 169 l~~~-----G~-------~V~~~d~~~-----~-~-~~--~~~~~---~~~~~l~ell~~--aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 169 AKGF-----GM-------RILYYSRTR-----K-P-EA--EKELG---AEYRPLEELLRE--SDFVSLHVPLTKETYHMI 222 (333)
T ss_pred HHHC-----CC-------EEEEECCCC-----C-h-hh--HHHcC---CEecCHHHHHhh--CCEEEEeCCCChHHhhcc
Confidence 8643 64 577788741 1 1 11 11111 123479999986 89887432 123689
Q ss_pred CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh-cc-cCCcEEEecCCCC--CcceeCCeeeCcCCCcccccchhhhH
Q 007782 425 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGL 500 (590)
Q Consensus 425 t~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~-~w-t~G~aifAsGSPF--~pv~~~G~~~~p~Q~NN~yiFPGigl 500 (590)
+++.+..|. +..++.=.|. .++--|+|+ ++ .+|+.-.|.=-=| +|.. +.. -=+..|+.+-|=+|-
T Consensus 223 ~~~~~~~mk---~ga~lIN~aR----g~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~--~~p--L~~~~nvilTPHia~ 291 (333)
T PRK13243 223 NEERLKLMK---PTAILVNTAR----GKVVDTKALVKALKEGWIAGAGLDVFEEEPYY--NEE--LFSLKNVVLAPHIGS 291 (333)
T ss_pred CHHHHhcCC---CCeEEEECcC----chhcCHHHHHHHHHcCCeEEEEeccCCCCCCC--Cch--hhcCCCEEECCcCCc
Confidence 999999995 6667776665 333333333 21 4566543321111 1111 111 123468888898874
No 136
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.96 E-value=1.2 Score=46.63 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=25.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
-||.|+|+|+.|.++|..+... | .++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 3799999999999999998753 5 346777763
No 137
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.63 E-value=1.1 Score=45.78 Aligned_cols=103 Identities=20% Similarity=0.307 Sum_probs=59.8
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc-c-c-CCCCCH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E-H-EPVNNL 402 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-~-~-~~~~~L 402 (590)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ .. .+|..+ .-|.. + + .....+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~RQ-~l~~~~diG~~Ka~~a 83 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SL---SNLQRQ-VLHSDANIGQPKVESA 83 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-cc---cCcccc-eeeeHhhCCCcHHHHH
Confidence 468889999999999999999999764 76 78999999832 22 235432 11111 1 1 111245
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCC
Q 007782 403 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPT 448 (590)
Q Consensus 403 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt 448 (590)
.+.++...|++-|-.-. ..++++-+...-+ +--+|+ +.-||.
T Consensus 84 ~~~l~~inp~v~i~~~~--~~i~~~~~~~~~~--~~DlVvd~~D~~~ 126 (240)
T TIGR02355 84 KDALTQINPHIAINPIN--AKLDDAELAALIA--EHDIVVDCTDNVE 126 (240)
T ss_pred HHHHHHHCCCcEEEEEe--ccCCHHHHHHHhh--cCCEEEEcCCCHH
Confidence 56666667776665432 2355443333211 222444 555655
No 138
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.45 E-value=3.1 Score=44.18 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~G-AGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.=++..+.++++++++|+| .|..|..+|.+|... |. .+++++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 4556777888888899999999999999 999999999999752 53 45555432 11
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEV 428 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~ev 428 (590)
+|.|++++ .|++|-.-+.++.+++++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchhe
Confidence 37788886 899998888887777766
No 139
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.39 E-value=4.3 Score=42.83 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-+|++.=++..+.+|++++++++|-+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 456778888889999999999999999986 578888888853 243 35666542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|-..|.++.|++|+|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 140
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=84.28 E-value=4.7 Score=39.17 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
--+|-.|++.-++..+.++++.+++++|.+. -|.-+|.||... |. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~-------------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK-------------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT--------------
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC--------------
Confidence 3567788888899999999999999999984 888888888642 42 24444443
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..++++.++.++|+
T Consensus 70 ----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777876 99999999999999999886
No 141
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.98 E-value=1.8 Score=44.61 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=57.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCC-CcCCCch--hc-hhhccccCCCCCHHHHhc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FK-KPWAHEHEPVNNLLDAVK 407 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~-R~~~l~~--~k-~~fA~~~~~~~~L~e~V~ 407 (590)
||.|+|+|..|..+|..|... | .+++++|+..-..+. +...... .. ........-..++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998653 4 357778775211100 0000000 00 000000011246777776
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007782 408 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 449 (590)
Q Consensus 408 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 449 (590)
. +|++| ++... ...+++++.+..+ .+..+|+.++|-..
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 5 67766 33322 3578888887754 34568888887543
No 142
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.75 E-value=2.9 Score=44.27 Aligned_cols=102 Identities=16% Similarity=0.320 Sum_probs=65.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc--ccC-CCCCHHHHhcc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHE-PVNNLLDAVKV 408 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~--~~~-~~~~L~e~V~~ 408 (590)
||.|+|||..|.-+|-+|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. ... ...+ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998864 255 3689999974111111111233221 2221 100 0123 456766
Q ss_pred cCCcEEEeccCC---CCCCC--------------HHHHHHHHcCCCCcEEEecCCCC
Q 007782 409 IKPTILIGSSGV---GRTFT--------------KEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 409 vkPtvLIG~S~~---~g~Ft--------------~evv~~Ma~~~erPIIFaLSNPt 448 (590)
.|++|=+.+. +| -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 8988866655 33 23 47788888999999999999997
No 143
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.64 E-value=1.8 Score=43.03 Aligned_cols=118 Identities=12% Similarity=0.177 Sum_probs=67.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 408 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 408 (590)
++.||.|+|+|..|..++..+... |.. -.++++++++. + .+.+...+..|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999888642 310 11346655542 0 111333333331 1123567888875
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC-CcEEEecC
Q 007782 409 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASG 471 (590)
Q Consensus 409 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~-G~aifAsG 471 (590)
.|++| ++..+. .-+++++.++.+-+..+|+.++.-.+ .++.-+|.+ +..++-++
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi~-----~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGIG-----PSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCCC-----HHHHHHHcCCCCeEEEEC
Confidence 78776 444443 45889998876544457777776653 334444433 33455455
No 144
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=83.51 E-value=5.5 Score=42.56 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=71.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHhc
Q 007782 331 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 407 (590)
Q Consensus 331 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 407 (590)
-||.|+|| |..|..+|-.|+. .|+-.-+-...+.|+|.+.-. .++..-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 47999998 9999999988764 254100011279999986311 111111243332222221111135567777
Q ss_pred ccCCcEEEeccCCC---CCCC------------HHHHHHHHcCCC-CcEEEecCCCCCCCCCCHHHHhccc
Q 007782 408 VIKPTILIGSSGVG---RTFT------------KEVIEAMASFNE-KPLILALSNPTSQSECTAEEAYTWS 462 (590)
Q Consensus 408 ~vkPtvLIG~S~~~---g~Ft------------~evv~~Ma~~~e-rPIIFaLSNPt~~aEctpedA~~wt 462 (590)
+ .|++|=+.|.+ | .| +++++.+++++. .-||+--|||- ....--+++++
T Consensus 79 d--aDvVVitAG~~~k~g-~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPG-MERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 6 89888555543 3 22 457778888987 99999999997 33344444444
No 145
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.51 E-value=3.2 Score=43.40 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=66.2
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNL 402 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~---~~~~~L 402 (590)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.. +++. |..+..+. ....-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 468899999999999999999999865 76 78999998854332 2442 21111110 111246
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCC
Q 007782 403 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQS 451 (590)
Q Consensus 403 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~a 451 (590)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+.
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~ 136 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPKA 136 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHHH
Confidence 6777777788766432 2345655554443222334666777766433
No 146
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=83.42 E-value=1.1 Score=44.38 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=34.3
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 468889999999999999999999875 76 7899999983
No 147
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=83.41 E-value=10 Score=40.15 Aligned_cols=136 Identities=13% Similarity=0.193 Sum_probs=88.7
Q ss_pred cCCCceeccCC---CchHHHHHHHHHHHHHHh------------------------CCCCccceEEEeCcChHHHHHHHH
Q 007782 296 GTTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAEL 348 (590)
Q Consensus 296 r~~~~~FNDDi---QGTaaV~LAgll~A~r~~------------------------g~~l~d~riv~~GAGsAg~GIA~l 348 (590)
+..+.+.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|--+|++
T Consensus 84 ~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~ 163 (311)
T PRK08410 84 KKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI 163 (311)
T ss_pred hCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHH
Confidence 35666666422 335556677777766532 246899999999999999999998
Q ss_pred HHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCC
Q 007782 349 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTF 424 (590)
Q Consensus 349 i~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~F 424 (590)
+.. + |+ +|+.+|+.+- .. + ..| ...+|.|+++. .|+++=. ...-++|
T Consensus 164 ~~~-f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li 214 (311)
T PRK08410 164 AQA-F----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLI 214 (311)
T ss_pred Hhh-c----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhccc
Confidence 853 2 64 5888888531 10 0 011 12479999987 8888732 2334799
Q ss_pred CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEE
Q 007782 425 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAI 467 (590)
Q Consensus 425 t~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~w--t~G~ai 467 (590)
+++.++.|. +..++.=.|. .++-=|+|+-. .+|+.-
T Consensus 215 ~~~~~~~Mk---~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 215 AYKELKLLK---DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred CHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 999999996 6667775554 55655555432 456654
No 148
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=83.36 E-value=2.3 Score=44.26 Aligned_cols=117 Identities=21% Similarity=0.407 Sum_probs=69.4
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC----CCchhchhhcccc---CCCCCHHHH
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 405 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~----~l~~~k~~fA~~~---~~~~~L~e~ 405 (590)
|.|+|||..|.++|..++. .|+ + .++++|.+ .++.. ++.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5799999999999987764 255 2 69999986 22210 011110 000000 011344 45
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCc---EEE
Q 007782 406 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR---AIF 468 (590)
Q Consensus 406 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~---aif 468 (590)
++. .|++|=+.+.+.. +-+++++.|.+++...+|+-.|||. ......+++++ |. -+|
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEE
Confidence 665 8888843333211 2347888899999999999999998 33333444554 32 377
Q ss_pred ecCC
Q 007782 469 ASGS 472 (590)
Q Consensus 469 AsGS 472 (590)
++|.
T Consensus 138 Glgt 141 (300)
T cd01339 138 GMAG 141 (300)
T ss_pred Eecc
Confidence 7774
No 149
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.27 E-value=4.6 Score=42.75 Aligned_cols=85 Identities=20% Similarity=0.362 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.-++..|.+++++++|++|.+ ..|.-+|.||... ..|. .+.+|.++
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~a-------tVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SENA-------TVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCCC-------EEEEeCCC--------------
Confidence 456778888888999999999999999985 5788888888531 0132 34555442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1368888987 99999999999999999996
No 150
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=83.26 E-value=4.8 Score=42.92 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 007782 309 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 387 (590)
Q Consensus 309 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 387 (590)
-.-+|-+|++.=++-.|.+|+++++||+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3456677788888999999999999999986 568888888754 24 246666553
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 388 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 388 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 201 -----------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 -----------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357888887 99999999999999999997
No 151
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=83.22 E-value=2 Score=47.43 Aligned_cols=81 Identities=12% Similarity=0.025 Sum_probs=47.6
Q ss_pred HHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC---CCchhchhhcc
Q 007782 318 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SLQHFKKPWAH 394 (590)
Q Consensus 318 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~---~l~~~k~~fA~ 394 (590)
+.++.-....|.+.|+.++|-+.-..|+++.+.+ .|+... . +++.++.+ .+... .-+.
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v~----~--------~~~~~~~~~~~~~~~~-~~~~- 359 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQIV----A--------AVTTTGSPLLQKLPVE-TVVI- 359 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEEE----E--------EEeCCCCHHHHhCCcC-cEEe-
Confidence 3444444456678999999988888999999754 476321 1 11221111 01110 0111
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccC
Q 007782 395 EHEPVNNLLDAVKVIKPTILIGSSG 419 (590)
Q Consensus 395 ~~~~~~~L~e~V~~vkPtvLIG~S~ 419 (590)
.+...|++.++..+||++||-|-
T Consensus 360 --~D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 360 --GDLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred --CCHHHHHHHHhhcCCCEEEECcc
Confidence 12246788898889999998664
No 152
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.18 E-value=4.9 Score=42.63 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
+=.-+|-+|++.=++..+.++++.++|++|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~------------ 192 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK------------ 192 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 34567778888889999999999999999986 578888888854 243 34555542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 387 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 387 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 193 ------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 ------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1357888887 99999999999999999997
No 153
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.02 E-value=4 Score=44.30 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=61.0
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCC--CCCH-H
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNL-L 403 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~--~~~L-~ 403 (590)
.+++.+++|+|+|.+|.++|+.++.. | .+++++|++.- +.+......+...... ..+. .
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~~~------~~~~~~~~~l~~~~~~~~~~~~~~ 63 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEKEE------DQLKEALEELGELGIELVLGEYPE 63 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCCch------HHHHHHHHHHHhcCCEEEeCCcch
Confidence 36789999999999999999888753 6 46899988630 0111111111000000 0011 1
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 007782 404 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 472 (590)
Q Consensus 404 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGS 472 (590)
+.+. ++|++|-.++.. .-++++..+= ...-||+ +..|+.... ...+.|..|||
T Consensus 64 ~~~~--~~d~vv~~~g~~-~~~~~~~~a~--~~~i~~~-------~~~~~~~~~----~~~~vI~ITGS 116 (450)
T PRK14106 64 EFLE--GVDLVVVSPGVP-LDSPPVVQAH--KKGIEVI-------GEVELAYRF----SKAPIVAITGT 116 (450)
T ss_pred hHhh--cCCEEEECCCCC-CCCHHHHHHH--HCCCcEE-------eHHHHHHhh----cCCCEEEEeCC
Confidence 2233 489888766643 4455555442 2345665 223332222 23678889998
No 154
>PRK08291 ectoine utilization protein EutC; Validated
Probab=83.00 E-value=5.1 Score=42.52 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=66.2
Q ss_pred HHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc
Q 007782 316 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 395 (590)
Q Consensus 316 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~ 395 (590)
|.+++..... -..++++|+|+|..|..++..+... .++ +++.++|+. .+ +...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~---~a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AA---KAEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH---HHHHHHHHHhhc
Confidence 4455554432 2347999999999988877766542 243 678888763 22 233333333211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 007782 396 ----HEPVNNLLDAVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 457 (590)
Q Consensus 396 ----~~~~~~L~e~V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEctped 457 (590)
.....++.++++. .|++|-++. ...+|+.+.++. .--|.++ |+--.+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1123678999985 899986643 334677766642 1123333 4433456888765
No 155
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.89 E-value=5.3 Score=42.49 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.-++..|.+++++++|++|.+ -.|--+|.||.. .| ..+.+|+|+
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~-------------- 193 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA-------------- 193 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC--------------
Confidence 456777888889999999999999999986 578888888753 24 235566553
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 194 ----------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ----------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 156
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=82.78 E-value=6 Score=41.98 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=91.6
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 405 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 405 (590)
..++++++.|+|.|..|..||+.+... |+ +++.+|+.. .. .+... .+ ....+|.|+
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~~----~~---~~~~~-~~----~~~~~l~e~ 187 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRSR----KS---WPGVQ-SF----AGREELSAF 187 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCC----CC---CCCce-ee----cccccHHHH
Confidence 468899999999999999999999753 65 467777631 11 11111 11 123579999
Q ss_pred hcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh--cccCCcEEEecCCCCCccee
Q 007782 406 VKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY--TWSKGRAIFASGSPFDPFEY 479 (590)
Q Consensus 406 V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~--~wt~G~aifAsGSPF~pv~~ 479 (590)
++. .|+++=+- ..-++|+++.++.|. +..++.=.|. .++--|+|+ ....|+.-.|.--=|++--.
T Consensus 188 l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~vVde~aL~~aL~~g~i~gaalDVf~~EPl 258 (312)
T PRK15469 188 LSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLAR----GVHVVEDDLLAALDSGKVKGAMLDVFSREPL 258 (312)
T ss_pred Hhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECCC----ccccCHHHHHHHHhcCCeeeEEecCCCCCCC
Confidence 987 88887321 112578888888885 4556665554 666666665 23466654443222221111
Q ss_pred CCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007782 480 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 526 (590)
Q Consensus 480 ~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v 526 (590)
... ..-=+..|+++-|=+|- .+. ...|...+++-+-.+.
T Consensus 259 ~~~-~pl~~~~nvi~TPHiag------~t~-~~~~~~~~~~n~~~~~ 297 (312)
T PRK15469 259 PPE-SPLWQHPRVAITPHVAA------VTR-PAEAVEYISRTIAQLE 297 (312)
T ss_pred CCC-ChhhcCCCeEECCcCCC------CcC-HHHHHHHHHHHHHHHH
Confidence 000 00124568888887763 221 2345555555554443
No 157
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=82.78 E-value=7.1 Score=41.70 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=78.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 408 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 408 (590)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. .+...-+|.+...++........+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 99999999887642 44100000168999974221 1111112443332332111111255677877
Q ss_pred cCCcEEEeccCCCCC--C------------CHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEecC
Q 007782 409 IKPTILIGSSGVGRT--F------------TKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASG 471 (590)
Q Consensus 409 vkPtvLIG~S~~~g~--F------------t~evv~~Ma~~-~erPIIFaLSNPt~~aEctpedA~~wt~G--~aifAsG 471 (590)
.|++|=+.+.+.. - =+++++.|+++ ++.-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 8888866555421 1 24677888889 4999999999997 4444455555532 2277888
Q ss_pred CCCCc
Q 007782 472 SPFDP 476 (590)
Q Consensus 472 SPF~p 476 (590)
.=.+.
T Consensus 151 t~LDs 155 (324)
T TIGR01758 151 TRLDH 155 (324)
T ss_pred eehHH
Confidence 65443
No 158
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.63 E-value=5.4 Score=42.23 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
+=.-+|-+|++.=++..|.+++++++|++|-+ ..|--+|.||.. .|. .+.+|+|+
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~------------ 190 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK------------ 190 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 44567778888889999999999999999986 578888888853 242 34555443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 387 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 387 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.||+++|+
T Consensus 191 ------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 191 ------------TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 159
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.39 E-value=1.7 Score=44.42 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.0
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999775 76 799999998
No 160
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=82.35 E-value=3.3 Score=42.33 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=56.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCC-CcCCCch---hchhhccccCCCCCHHHHhc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH---FKKPWAHEHEPVNNLLDAVK 407 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~-R~~~l~~---~k~~fA~~~~~~~~L~e~V~ 407 (590)
||.|+|+|+.|..+|..|... | .+++++++ +--.+. +...+.- ...... ......++.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC
Confidence 799999999999999988653 4 46788877 210000 0000100 000000 0011235556554
Q ss_pred ccCCcEEE-eccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007782 408 VIKPTILI-GSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 449 (590)
Q Consensus 408 ~vkPtvLI-G~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 449 (590)
. +|++| .+.+ ...+++++.++.+ .+..+|+.+.|.-.
T Consensus 68 ~--~d~vilavk~---~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 P--FDLVILAVKA---YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred C--CCEEEEEecc---cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 3 67655 3333 3478999988763 45668888999863
No 161
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.26 E-value=5.6 Score=42.14 Aligned_cols=84 Identities=21% Similarity=0.392 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 007782 309 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 387 (590)
Q Consensus 309 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 387 (590)
=.-+|-+|++.=++..|.+++++++|++|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 3456777888888999999999999999986 578888888753 242 35555442
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 388 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 388 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347888887 99999999999999999997
No 162
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.05 E-value=5.8 Score=42.27 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
+-.-+|-.|++.=++-.|.++++++++++|.+ ..|.-+|.||.. .|+. ....+.++.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 34456777888888999999999999999986 578888887753 2221 01234555433
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 387 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 387 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888987 99999999999999999997
No 163
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.01 E-value=8.4 Score=42.49 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=63.1
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCHHH
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLD 404 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~---~~~~~L~e 404 (590)
+..+||+|+|.|-.|.++|++|.. .|. .+.+.|.+-- ......-..+.... .......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSE------EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCC------ccchHHHHHHHhCCCEEEeCCCChH
Confidence 456799999999999999998865 363 5778886420 01111000111100 00011233
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeee
Q 007782 405 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 484 (590)
Q Consensus 405 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 484 (590)
-++ ++|.+|=.++.+ .-.+++.++.. ..-||+ +.+| -++.+.+.+.|-.||| ||||-
T Consensus 74 ~~~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~-------s~~e----~~~~~~~~~vIaITGT-------nGKTT 130 (458)
T PRK01710 74 KLD--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT-------SEME----EFIKYCPAKVFGVTGS-------DGKTT 130 (458)
T ss_pred Hhc--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE-------echH----HhhhhcCCCEEEEECC-------CCHHH
Confidence 343 478776444443 23455555544 346775 2232 3444445678889998 77654
No 164
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=81.97 E-value=2.1 Score=46.16 Aligned_cols=109 Identities=21% Similarity=0.345 Sum_probs=72.4
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc----cCCCCCHH
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 403 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~~L~ 403 (590)
...-|++++|.|-+|+--|++.+ |+. -++.++|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999888764 442 467777764 333 43333445432 12234699
Q ss_pred HHhcccCCcEEEec-----cCCCCCCCHHHHHHHHcCC-------CCcEEEecCCCCCCCCCCHHH
Q 007782 404 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFN-------EKPLILALSNPTSQSECTAEE 457 (590)
Q Consensus 404 e~V~~vkPtvLIG~-----S~~~g~Ft~evv~~Ma~~~-------erPIIFaLSNPt~~aEctped 457 (590)
|++++ .|.+||. +..|.+.|+|+++.|.... +.==+|-=|.||+..+-|-++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99986 9988886 4556689999999996321 122235556777777766554
No 165
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.71 E-value=1.9 Score=41.80 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999987
No 166
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=81.59 E-value=1.3 Score=43.87 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=52.9
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc---cC-CCCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HE-PVNN 401 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~---~~-~~~~ 401 (590)
+.|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|.. +.|... +. ....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999765 86 8999999983 2221 2432 112221 11 1235
Q ss_pred HHHHhcccCCcEEEecc
Q 007782 402 LLDAVKVIKPTILIGSS 418 (590)
Q Consensus 402 L~e~V~~vkPtvLIG~S 418 (590)
+.+.++...|++-|=..
T Consensus 80 ~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 80 SLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 77888899999877543
No 167
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.49 E-value=3.7 Score=43.94 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=54.8
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---C-----CCCCHHHHhcccCCcEEEecCCCCC
Q 007782 404 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---Q-----SECTAEEAYTWSKGRAIFASGSPFD 475 (590)
Q Consensus 404 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~---~-----aEctpedA~~wt~G~aifAsGSPF~ 475 (590)
++-+..+|+++|..|+. ++-..++-+.+ ++-+|=|+.=.-||-. . .+-|.++++++.. . |+..-=..
T Consensus 104 ~l~~~~~~~aIlaSnTS-~l~~s~la~~~-~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lGk~ 178 (321)
T PRK07066 104 RISRAAKPDAIIASSTS-GLLPTDFYARA-THPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALGMR 178 (321)
T ss_pred HHHHhCCCCeEEEECCC-ccCHHHHHHhc-CCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcCCE
Confidence 44456678888887776 33333333322 3344557777778763 2 2335556655432 1 22211133
Q ss_pred cceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHH
Q 007782 476 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 518 (590)
Q Consensus 476 pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aA 518 (590)
||..+ ...||-.=|-..+|-+-=++-+..--..|.+-+-+|
T Consensus 179 pV~v~--kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a 219 (321)
T PRK07066 179 PLHVR--KEVPGFIADRLLEALWREALHLVNEGVATTGEIDDA 219 (321)
T ss_pred eEecC--CCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44432 145666666666666655555544444444444444
No 168
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.48 E-value=3.4 Score=42.38 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.|++.+++..+...++.+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 4556666654555667899999999888777776653 24 368888763
No 169
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.45 E-value=2 Score=39.43 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=43.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc--c-c-CCCCCHHHHhc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--E-H-EPVNNLLDAVK 407 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~--~-~-~~~~~L~e~V~ 407 (590)
||+++|+|.-|.-+|+.|+.. |+ ++|.++|.+-+ .. .+|..+ .|.. + . +....+.+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~---~nl~r~--~~~~~~~vG~~Ka~~~~~~l~ 63 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-EL---SNLNRQ--FLARQADIGKPKAEVAARRLN 63 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Cc---chhhcc--ccCChhHCCChHHHHHHHHHH
Confidence 689999999999999999764 76 78999998733 21 124322 1221 1 1 11134666677
Q ss_pred ccCCcEEEe
Q 007782 408 VIKPTILIG 416 (590)
Q Consensus 408 ~vkPtvLIG 416 (590)
...|.+=|-
T Consensus 64 ~~~p~v~i~ 72 (143)
T cd01483 64 ELNPGVNVT 72 (143)
T ss_pred HHCCCcEEE
Confidence 667766553
No 170
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.45 E-value=25 Score=36.04 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988643 53 68888854
No 171
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.31 E-value=7.3 Score=40.13 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 6899999999999999988653 5 368888864
No 172
>PRK05442 malate dehydrogenase; Provisional
Probab=81.26 E-value=9.3 Score=40.94 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=65.5
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--cCCCcCCCchhchhhccccCCCCCHHHHhc
Q 007782 331 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 407 (590)
Q Consensus 331 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 407 (590)
-||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.=. .++..-+|.+...++-+...-..+..+.++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhC
Confidence 38999998 99999998877653 33100001389999985311 111111244433233222111135567787
Q ss_pred ccCCcEEEeccCC---CCC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 007782 408 VIKPTILIGSSGV---GRT-----------FTKEVIEAMASFN-EKPLILALSNPT 448 (590)
Q Consensus 408 ~vkPtvLIG~S~~---~g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt 448 (590)
. .|++|=+.+. +|- .=+++++.+++++ ...||+-.|||-
T Consensus 80 d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 80 D--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 7 8888844443 331 1245667777766 699999999997
No 173
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.97 E-value=4.7 Score=42.77 Aligned_cols=126 Identities=18% Similarity=0.282 Sum_probs=75.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc--CCCCCHHHHhcc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 408 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 408 (590)
.||.|+|||..|..+|-.|+. .|+ ...+.|+|.+-=..++-.-+|.+.. +|.... ....+.++ ++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 599999999999999887753 255 4789999974211111111233222 232211 11135554 665
Q ss_pred cCCcEEEeccCCCCC--CCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 007782 409 IKPTILIGSSGVGRT--FTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 472 (590)
Q Consensus 409 vkPtvLIG~S~~~g~--Ft~------------evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt--~G~aifAsGS 472 (590)
.|++|=+.+.+.. -|. ++++.|.+++..-+|+-.|||.. ....-+++++ .-+-+|++|.
T Consensus 72 --adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 72 --SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecCc
Confidence 8988755554311 333 67788889999999999999983 4444555543 1123677764
Q ss_pred C
Q 007782 473 P 473 (590)
Q Consensus 473 P 473 (590)
-
T Consensus 147 ~ 147 (312)
T cd05293 147 N 147 (312)
T ss_pred h
Confidence 3
No 174
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.85 E-value=4.7 Score=41.01 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=55.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCC-CcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~-R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
||.|+|+|+.|..+|..+.+. | .+++++|+++=-.+. +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999888653 4 468888874211000 0000100000000000112345443 3 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 007782 411 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 449 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 449 (590)
+|++| ++... .-++++++.++..- +.-+|+.+.|.-.
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 78776 44333 34789999998643 3446777999753
No 175
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.40 E-value=1.9 Score=43.96 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.|++.||+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 57889999999999999999999764 76 799999987
No 176
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.40 E-value=6.1 Score=43.06 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=21.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALE 352 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~ 352 (590)
...||.|+|||+-|+.+|..+...
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc
Confidence 457999999999999999999753
No 177
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=80.25 E-value=3.4 Score=46.32 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.|++.+++..|.++++.+++|+|+|.+|.+++..+.. .|. +++++|++
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4778888888889999999999999777777776653 252 57777653
No 178
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=80.16 E-value=12 Score=39.90 Aligned_cols=120 Identities=13% Similarity=0.154 Sum_probs=74.1
Q ss_pred cCCCceecc-CC--CchHHHHHHHHHHHHHH-------------------hCCCCccceEEEeCcChHHHHHHHHHHHHH
Q 007782 296 GTTHLVFND-DI--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 353 (590)
Q Consensus 296 r~~~~~FND-Di--QGTaaV~LAgll~A~r~-------------------~g~~l~d~riv~~GAGsAg~GIA~li~~~~ 353 (590)
+..+.+.|- +. +.+|=-+++-+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+...
T Consensus 90 ~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~- 168 (330)
T PRK12480 90 KHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF- 168 (330)
T ss_pred HCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-
Confidence 345555553 22 23444567777766653 13468899999999999999999988642
Q ss_pred HHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc-CC---CCCCCHHHH
Q 007782 354 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS-GV---GRTFTKEVI 429 (590)
Q Consensus 354 ~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S-~~---~g~Ft~evv 429 (590)
|. +++.+|+.- +. .. .+.+ ...+|.|+++. .|+++=.- .. -+.|.++++
T Consensus 169 ----G~-------~V~~~d~~~----~~---~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 169 ----GA-------TITAYDAYP----NK---DL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred ----CC-------EEEEEeCCh----hH---hh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHH
Confidence 53 578888641 10 11 1111 23478898886 78776322 11 146777888
Q ss_pred HHHHcCCCCcEEEecCC
Q 007782 430 EAMASFNEKPLILALSN 446 (590)
Q Consensus 430 ~~Ma~~~erPIIFaLSN 446 (590)
..|. +..++.-.|.
T Consensus 222 ~~mk---~gavlIN~aR 235 (330)
T PRK12480 222 DHVK---KGAILVNAAR 235 (330)
T ss_pred hcCC---CCcEEEEcCC
Confidence 8885 5556665554
No 179
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=80.05 E-value=0.81 Score=55.76 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.4
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..|++.||+++|+|..|+-+++.|+.. |+.-. ...+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 467889999999999999999999876 65210 13689999987
No 180
>PRK06487 glycerate dehydrogenase; Provisional
Probab=80.02 E-value=13 Score=39.34 Aligned_cols=186 Identities=16% Similarity=0.109 Sum_probs=107.8
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHHh------------------------CCCCccceEEEeCcChHHHHHHHHH
Q 007782 297 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 349 (590)
Q Consensus 297 ~~~~~FNDDi---QGTaaV~LAgll~A~r~~------------------------g~~l~d~riv~~GAGsAg~GIA~li 349 (590)
..+.+.|--- +.+|=-+++-+|+..|-. +..|.++++.|+|.|..|-.||+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666322 345555677777765532 2358899999999999999999988
Q ss_pred HHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCC
Q 007782 350 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 425 (590)
Q Consensus 350 ~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft 425 (590)
... |+ +++.+|+.+ ... . + ...+|.|+++. .|+++=. ...-|.|+
T Consensus 168 ~~f-----gm-------~V~~~~~~~-----~~~---~-----~----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EAF-----GM-------RVLIGQLPG-----RPA---R-----P----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hhC-----CC-------EEEEECCCC-----Ccc---c-----c----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 532 64 566677642 100 0 0 12379999987 8988832 23357999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh--cccCCcEEEecCCCCC--cceeCCeeeCcCCCcccccchhhhHH
Q 007782 426 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAY--TWSKGRAIFASGSPFD--PFEYNGKVFVPGQANNAYIFPGFGLG 501 (590)
Q Consensus 426 ~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~--~wt~G~aifAsGSPF~--pv~~~G~~~~p~Q~NN~yiFPGiglG 501 (590)
++.+..|. +..++.=.|. .++--|+|+ ...+|+.-.|.=-=|. |.. .+..+.--+..|+.+-|=+|-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~-~~~pl~~~~~pnvilTPHia~~ 288 (317)
T PRK06487 217 ARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPV-NGNPLLAPDIPRLIVTPHSAWG 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCC-CCCchhhcCCCCEEECCccccC
Confidence 99999996 5667775554 455555544 2246665443211111 111 1111110035688888987722
Q ss_pred HHHhCCcccCHHHHHHHHHHHHccc
Q 007782 502 LVISGAIRVHDDMLLAASEALAKQV 526 (590)
Q Consensus 502 ~l~s~a~~Itd~M~~aAA~aLA~~v 526 (590)
. ..-...|...+++.|.+..
T Consensus 289 t-----~e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 289 S-----REARQRIVGQLAENARAFF 308 (317)
T ss_pred C-----HHHHHHHHHHHHHHHHHHH
Confidence 2 2223445555555555544
No 181
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.97 E-value=5.1 Score=44.88 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcC-CCc--eeccCCCchHHHHHHHHHHHHHHh--------CCCCcc
Q 007782 262 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAE 330 (590)
Q Consensus 262 defv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~A~r~~--------g~~l~d 330 (590)
.+.+..+.... |+ |..|=+....-.++.++|.- ..| .+|++..+.+....+-++..++.. ...-.+
T Consensus 136 v~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 212 (515)
T TIGR03140 136 VQALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDP 212 (515)
T ss_pred HHHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCC
Confidence 33344444445 54 44555777777889999974 344 458887888888888888777644 122446
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~ 351 (590)
.++||+|||+||+..|..+..
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 889999999999999887764
No 182
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=79.89 E-value=1.7 Score=50.60 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.9
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
.+|++.||+++|||.-|+-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999875 76 79999998744
No 183
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.79 E-value=2.6 Score=47.12 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=62.8
Q ss_pred eeeecCCCchHHHHHHHHcC-CCc--eeccCCCchHHHHHHHHHHHHHHhCC--------CCccceEEEeCcChHHHHHH
Q 007782 278 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIGG--------TLAEHRFLFLGAGEAGTGIA 346 (590)
Q Consensus 278 IqfEDf~~~~Af~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~A~r~~g~--------~l~d~riv~~GAGsAg~GIA 346 (590)
|.+|=+....-.++.++|.- ..| ++||+....|....+-++.+++.... ...+..+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66776777777889999974 343 46777788888888888888875322 24457899999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 347 ELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 347 ~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 88864 364 56666654
No 184
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.35 E-value=6.2 Score=42.83 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=27.9
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+++.+++|.|+|..|.++|+.+.+ .|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G~-------~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LGA-------NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 567899999999999999888765 363 57888864
No 185
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=79.12 E-value=9.4 Score=39.71 Aligned_cols=93 Identities=15% Similarity=0.241 Sum_probs=56.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cCCCCCHHHHhccc-
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 409 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~v- 409 (590)
||.|+|.|..|..+|..|... | .+++++|+.. . ..+. ++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~---~~~~----~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----E---AVEA----LAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----H---HHHH----HHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998653 5 3577777641 1 1111 2211 11235777877765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 448 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 448 (590)
+||++|=+-. .+...++++..+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3666553322 23356667665543 34567888887633
No 186
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=78.99 E-value=8.5 Score=38.43 Aligned_cols=91 Identities=15% Similarity=0.244 Sum_probs=50.7
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHh
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 406 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~ee-A~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 406 (590)
..++||.|+|.|..+. +|.-+...|.. ++..+- +..-+.+.|..-+++.-- +-..+-..|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 4569999999998774 77777776642 110000 112222323222322211 112334445542 32222
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHH
Q 007782 407 KVIKPTILIGSSGVGRTFTKEVIEAMA 433 (590)
Q Consensus 407 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma 433 (590)
-+-|++|+.|..|. |+++++.+.
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~ 130 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE 130 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH
Confidence 35799999999887 899998874
No 187
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.85 E-value=22 Score=36.03 Aligned_cols=95 Identities=12% Similarity=0.198 Sum_probs=52.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 411 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 411 (590)
||.|+|+|..|..+++-|... |.. .+.+++.|+. . +......+.+. ......+..|+++. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~----~---~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN----A---QIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC----H---HHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 699999999999999988643 532 2446666542 1 11222222221 01123467777765 5
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 412 TILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 412 tvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
|++| ++..+.. .+++++... ..+..+|+..+-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCCCCEEEEECCCC
Confidence 6655 3332322 366666652 33556777776665
No 188
>PRK06141 ornithine cyclodeaminase; Validated
Probab=78.78 E-value=14 Score=38.94 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=64.4
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc---cCCCCCHHH
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLD 404 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~---~~~~~~L~e 404 (590)
....+++|+|+|..|..++..+... .++ ++|+++|+. .+ +...+...+.+. .....++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~---~a~~~a~~~~~~g~~~~~~~~~~~ 185 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PA---KAEALAAELRAQGFDAEVVTDLEA 185 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH---HHHHHHHHHHhcCCceEEeCCHHH
Confidence 3568999999999999998877553 132 678888763 22 133333333221 112367889
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 007782 405 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 457 (590)
Q Consensus 405 ~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEctped 457 (590)
+++. .|++|-+++.. .+|+.+.++ +.-.|-+. |++..+-|+.++-
T Consensus 186 av~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 186 AVRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred HHhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 9976 99998765533 346665553 22244443 5566678888753
No 189
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.56 E-value=1 Score=50.87 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=27.1
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 367 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~ 367 (590)
.+.-+|+|+|||-||+..|++|.+... .+..-|||.|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 345689999999999999999988622 1344455554
No 190
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.45 E-value=9.4 Score=40.65 Aligned_cols=87 Identities=18% Similarity=0.257 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.=++..+.+++++++|++|.+ ..|.-+|.||.. .|.+. --.+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 355777888888899999999999999986 578888888753 23210 0123334332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1368888886 99999999999999999997
No 191
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=78.31 E-value=2.5 Score=45.56 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=33.6
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467889999999999999999998764 76 789999998
No 192
>PRK07680 late competence protein ComER; Validated
Probab=78.20 E-value=4.4 Score=41.38 Aligned_cols=98 Identities=12% Similarity=0.244 Sum_probs=58.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 411 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 411 (590)
+|.|+|+|..|..+|..+... |.- ...+++++|++ . +........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~---~~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----P---AKAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----H---HHHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 699999999999999888643 420 12467777764 1 11222111110 01112467777765 7
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007782 412 TILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 449 (590)
Q Consensus 412 tvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 449 (590)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 7775 33333 3467888887654 34568889998763
No 193
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=78.20 E-value=3.3 Score=38.96 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
+|||+|+|.||+..|..+.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999972 24 5788886643
No 194
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=77.90 E-value=1.1 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~ 351 (590)
+...+.||||+|||.||++-|.-|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999984
No 195
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=77.49 E-value=18 Score=41.18 Aligned_cols=196 Identities=16% Similarity=0.127 Sum_probs=109.2
Q ss_pred cCCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcChHHHHHHHHHHHHHH
Q 007782 296 GTTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 354 (590)
Q Consensus 296 r~~~~~FNDDi---QGTaaV~LAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~li~~~~~ 354 (590)
+..+++.|--- +.+|=-+++.+|+..|- .|..|.++++.|+|-|..|-.+|+.+...
T Consensus 83 ~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f-- 160 (525)
T TIGR01327 83 ARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF-- 160 (525)
T ss_pred HCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC--
Confidence 34666666421 23444566777766552 25578999999999999999999998642
Q ss_pred HhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHH
Q 007782 355 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIE 430 (590)
Q Consensus 355 ~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~ 430 (590)
|+ +++.+|+.. ... .. ..+ ......+|.|+++. .|+++=. ...-++|+++.+.
T Consensus 161 ---G~-------~V~~~d~~~--~~~------~~-~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~ 217 (525)
T TIGR01327 161 ---GM-------KVLAYDPYI--SPE------RA-EQL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELA 217 (525)
T ss_pred ---CC-------EEEEECCCC--Chh------HH-Hhc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHh
Confidence 64 578888641 110 00 001 11112479999876 8887721 1234688999999
Q ss_pred HHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCccc
Q 007782 431 AMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRV 510 (590)
Q Consensus 431 ~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~I 510 (590)
.|. +..++.=.|.-.---|.---+|++ .|+.-.|.=-=|++=-.... .--+..|+.+-|=+|-....+
T Consensus 218 ~mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~----- 285 (525)
T TIGR01327 218 KMK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA----- 285 (525)
T ss_pred cCC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----
Confidence 885 566777666644333333334443 56654442111110000011 112456888889877433322
Q ss_pred CHHHHHHHHHHHHcccCc
Q 007782 511 HDDMLLAASEALAKQVTE 528 (590)
Q Consensus 511 td~M~~aAA~aLA~~v~~ 528 (590)
...|...+++.+.+....
T Consensus 286 ~~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 286 QENVATQVAEQVLDALKG 303 (525)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 234444555555555543
No 196
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=77.34 E-value=6.9 Score=44.25 Aligned_cols=102 Identities=19% Similarity=0.143 Sum_probs=54.2
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---CCCC-----CHHHHhcccCCcEEE-ecCCCCCccee
Q 007782 409 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---QSEC-----TAEEAYTWSKGRAIF-ASGSPFDPFEY 479 (590)
Q Consensus 409 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~---~aEc-----tpedA~~wt~G~aif-AsGSPF~pv~~ 479 (590)
.+|+.+|.+.+. .++.+-+..-.++-+|=+-+-.-||-. ..|+ |.++++++.. .++ .-|. .||..
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lgk--~pv~v 185 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWGK--TPVRA 185 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcCC--ceEEe
Confidence 478888874332 233443333333334446777777643 2222 3444444311 000 1111 12222
Q ss_pred CCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007782 480 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 519 (590)
Q Consensus 480 ~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA 519 (590)
+ ..||-.+|-.++|.+.=+..+...--++.+-+..+.
T Consensus 186 ~---d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 186 K---DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred c---CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1 246789999999988888777776666666666554
No 197
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.23 E-value=10 Score=40.19 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
+=.-+|-.|++.=++-.|.+|++.++|++|.+ ..|--+|.||.. .|. .+.+|+++
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~------------ 191 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF------------ 191 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC------------
Confidence 34567788888889999999999999999986 578888888853 243 34555432
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 387 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 387 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 192 ------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred ------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1256677776 99999999999999999996
No 198
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.15 E-value=47 Score=36.66 Aligned_cols=200 Identities=16% Similarity=0.175 Sum_probs=116.6
Q ss_pred HHHHHHHcCCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcChHHHHHHH
Q 007782 289 FELLAKYGTTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAE 347 (590)
Q Consensus 289 f~lL~ryr~~~~~FNDDi---QGTaaV~LAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ 347 (590)
.++-.--+..++++|--- +.+|=-+++.+|+..|- .|..|.+.++.|+|-|..|..+|+
T Consensus 89 id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~ 168 (409)
T PRK11790 89 VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSV 168 (409)
T ss_pred ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHH
Confidence 333333346889999532 23455568888887763 245699999999999999999999
Q ss_pred HHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCC
Q 007782 348 LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRT 423 (590)
Q Consensus 348 li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~ 423 (590)
.+... |+ +++.+|+.. + .... .+ ....+|.|+++. .|+++=.- ..-++
T Consensus 169 ~~~~f-----Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~l 220 (409)
T PRK11790 169 LAESL-----GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNM 220 (409)
T ss_pred HHHHC-----CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhc
Confidence 88643 64 577788631 1 0010 01 123479999987 88877321 12368
Q ss_pred CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEecCC---CCCcceeCCeee-CcCCCcccccchh
Q 007782 424 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGS---PFDPFEYNGKVF-VPGQANNAYIFPG 497 (590)
Q Consensus 424 Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~--wt~G~aifAsGS---PF~pv~~~G~~~-~p~Q~NN~yiFPG 497 (590)
|+++.+..|. +.-++.-.|. .++-=|+|+. ...|+ |.+.|. +.+|..-+.... .--+..|+++-|=
T Consensus 221 i~~~~l~~mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPH 292 (409)
T PRK11790 221 IGAEELALMK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPH 292 (409)
T ss_pred cCHHHHhcCC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCc
Confidence 9999999996 5567766554 4454444441 23566 332221 112221110000 1123568999998
Q ss_pred hhHHHHHhCCcccCHHHHHHHHHHHHcccCcc
Q 007782 498 FGLGLVISGAIRVHDDMLLAASEALAKQVTEE 529 (590)
Q Consensus 498 iglG~l~s~a~~Itd~M~~aAA~aLA~~v~~~ 529 (590)
+|-...- -...|...+++.+......+
T Consensus 293 ia~~t~e-----a~~~~~~~~~~nl~~~~~~~ 319 (409)
T PRK11790 293 IGGSTQE-----AQENIGLEVAGKLVKYSDNG 319 (409)
T ss_pred CCCCHHH-----HHHHHHHHHHHHHHHHHcCC
Confidence 8744322 23445566666666665433
No 199
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=77.09 E-value=12 Score=39.52 Aligned_cols=99 Identities=25% Similarity=0.381 Sum_probs=63.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc----cc--CC---CCC
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH--EP---VNN 401 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~----~~--~~---~~~ 401 (590)
||.|+|| |..|..+|..++.. |+ ...+.++|++--+ +.+..++.++.+ .. .. ..+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~-----g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~d 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKE-----DV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISSD 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECCC
Confidence 7999998 99999999987652 54 2479999985211 112222222111 00 01 124
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 402 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 402 L~e~V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
.+.++. .|++|=+.+.+ | .+-+++++.|.+++...+|+--|||-
T Consensus 67 -~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 67 -LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred -HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 345766 88888555532 2 23567788888899999999999997
No 200
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.94 E-value=21 Score=36.21 Aligned_cols=47 Identities=34% Similarity=0.437 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 007782 315 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 373 (590)
Q Consensus 315 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~ 373 (590)
+..+.|++..+. ..+.+++|+|+|..|.-.+.+. .+ .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 334556655544 3788999999987665544433 22 364 56877764
No 201
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.55 E-value=11 Score=40.08 Aligned_cols=83 Identities=27% Similarity=0.357 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.=++..|.+++++++|++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~-------------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK-------------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 356777888888999999999999999985 678888888854 242 34555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 189 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 ----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1247888887 99999999999999999996
No 202
>PRK06153 hypothetical protein; Provisional
Probab=76.47 E-value=3.1 Score=45.85 Aligned_cols=160 Identities=15% Similarity=0.269 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceec--cCCCchHHHHHHHHHHHHHHhCCCCccce
Q 007782 255 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHR 332 (590)
Q Consensus 255 ~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FN--DDiQGTaaV~LAgll~A~r~~g~~l~d~r 332 (590)
..|-.+.++.+.-+.---||-..|..+ .++.-|+.... +++=.+|| |=.=..+. +.+ .-.+|++.|
T Consensus 111 ~~y~~y~~k~~~Y~~ii~~~A~~~~~~--~~~~~~~~~~~-~~~~svf~y~dt~s~R~~--i~~-------~q~kL~~~~ 178 (393)
T PRK06153 111 GGYADYYHKMTTYATIISGPARVLDPT--ASARTFRVIED-AEEDSVFNYPDTASSRAG--IGA-------LSAKLEGQR 178 (393)
T ss_pred CCcccHHHHHHHHHHHhcchhhhcCCC--CCCcccCCCCC-cccCCceehhhhhccccC--hHH-------HHHHHhhCc
Confidence 467777777777666666664444333 23334432211 11122333 11111110 111 125788999
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-----CCCCCHHHHhc
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-----EPVNNLLDAVK 407 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-----~~~~~L~e~V~ 407 (590)
|+|+|+|..|.-|+++|+.. |+ ++|.++|.+=+ .. .+|...---|-.+. ....-+.+.++
T Consensus 179 VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~V-e~---SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 179 IAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDF-LQ---HNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred EEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEe-cc---cccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 99999999999999999875 76 78999999822 22 13543211111110 11234666677
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCC
Q 007782 408 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPT 448 (590)
Q Consensus 408 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt 448 (590)
...|.+ ......++++-+..+. +-.+|| ++=|..
T Consensus 244 ~in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~ 278 (393)
T PRK06153 244 NMRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGS 278 (393)
T ss_pred HhCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHH
Confidence 777754 2334457888777663 445665 444444
No 203
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.32 E-value=12 Score=39.71 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch
Q 007782 309 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 387 (590)
Q Consensus 309 TaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 387 (590)
=.-+|-.|++.=++-.|.+++++++|++|.+ ..|--+|.||.. .|. .+.++.|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-------------
Confidence 3466777888888999999999999999986 578888888854 242 34455332
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 388 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 388 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 190 -----------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 -----------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1258888887 99999999999999999997
No 204
>PLN03139 formate dehydrogenase; Provisional
Probab=76.15 E-value=21 Score=39.26 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=84.4
Q ss_pred CCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHH
Q 007782 325 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 404 (590)
Q Consensus 325 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e 404 (590)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... . .+ ..+. . ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~---~~~~-~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE---LEKE-T--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh---hHhh-c--CceecCCHHH
Confidence 4569999999999999999999999643 64 4777887532 0 00 0110 0 0112347999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc-c-cCCcEEEecCCCCCcce
Q 007782 405 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFASGSPFDPFE 478 (590)
Q Consensus 405 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~-w-t~G~aifAsGSPF~pv~ 478 (590)
+++. .|+++=..- .-++|+++.+..|. +.-+++=.|. .++.-|+|+. . ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9976 888873221 12689999999995 5557665554 4555554442 2 35666555543332211
Q ss_pred e-CCeeeCcCCCcccccchhhh
Q 007782 479 Y-NGKVFVPGQANNAYIFPGFG 499 (590)
Q Consensus 479 ~-~G~~~~p~Q~NN~yiFPGig 499 (590)
. ... .--+..|..+-|=++
T Consensus 323 lp~d~--pL~~~pNvilTPHia 342 (386)
T PLN03139 323 APKDH--PWRYMPNHAMTPHIS 342 (386)
T ss_pred CCCCC--hhhcCCCeEEccccc
Confidence 1 000 001345888888776
No 205
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.93 E-value=12 Score=39.59 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.=++..+.++++++++++|-+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~A-------tVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RHA-------TVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 456777888888999999999999999986 568888887753 232 34444332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 206
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.75 E-value=6.1 Score=38.32 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=24.1
Q ss_pred CCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+++.+++|.|| |..|..+++.++ + .|. +++++++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~----~-~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA----A-EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467889999998 445555555554 3 253 58888875
No 207
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=75.74 E-value=2.5 Score=46.05 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.7
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 568899999999999999999999865 76 789999987
No 208
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.67 E-value=37 Score=34.91 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=54.6
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 409 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 409 (590)
..||.|+|+|.-|..||+.++.. |.- ...+++++|+. . .+.+...+..|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~--~~~~~~l~~~~g--~~~~~~~~e~~~~- 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----N--ETRLQELHQKYG--VKGTHNKKELLTD- 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----C--HHHHHHHHHhcC--ceEeCCHHHHHhc-
Confidence 45899999999999999988653 410 11456666542 0 011222222221 1122466677764
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 448 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 448 (590)
.|++| ++-.+ -..+++++.+... .+..+|..+++-+
T Consensus 66 -aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 66 -ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66555 33333 2355666666543 3456777776654
No 209
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.55 E-value=12 Score=41.67 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=50.0
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHh
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 406 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 406 (590)
.+...||+|+|+|-+|.++|+.+.. .|. ++.+.|++= . ...+.+.....++... ..-.+-+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~--~-~~~~~l~~~gi~~~~~----~~~~~~~ 72 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDNE--T-ARHKLIEVTGVADIST----AEASDQL 72 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCCh--H-HHHHHHHhcCcEEEeC----CCchhHh
Confidence 3566899999999999999999864 363 578888641 1 0000011111111111 0111223
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 007782 407 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 441 (590)
Q Consensus 407 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPII 441 (590)
+ ++|.+|=.++.+ --.+++.++.. ...||+
T Consensus 73 ~--~~d~vV~Spgi~-~~~p~~~~a~~--~gi~v~ 102 (473)
T PRK00141 73 D--SFSLVVTSPGWR-PDSPLLVDAQS--QGLEVI 102 (473)
T ss_pred c--CCCEEEeCCCCC-CCCHHHHHHHH--CCCcee
Confidence 3 378888666766 35566665543 445654
No 210
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.36 E-value=8.3 Score=40.58 Aligned_cols=126 Identities=21% Similarity=0.327 Sum_probs=72.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC-CCCCHHHHhcccC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 410 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~-~~~~L~e~V~~vk 410 (590)
||.|+|+|..|..+|..++.. |+ .+.++++|.+-=...+...++.+. .+|-.... ...+. +.++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-----g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-----GL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-----CC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 799999999999999887642 64 367999997410001000012211 11211100 01344 55665
Q ss_pred CcEEEeccCCCCC----C----------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEecCCCC
Q 007782 411 PTILIGSSGVGRT----F----------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSPF 474 (590)
Q Consensus 411 PtvLIG~S~~~g~----F----------t~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~--G~aifAsGSPF 474 (590)
.|+.|=+.+.+.. . =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.--
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 7777744444311 1 136777888889999999999996 445555555441 12367776544
No 211
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=75.14 E-value=9.3 Score=39.78 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=55.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC-
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK- 410 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk- 410 (590)
||.|+|.|..|..+|+-+... |. +++++|++. ++ .+..+.. ......++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~~~~~~---g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VDVAGKL---GITARHSLEELVSKLEA 59 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HHHHHHC---CCeecCCHHHHHHhCCC
Confidence 689999999999999988652 53 477777641 11 2221110 1122357778877643
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 007782 411 PTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 448 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 448 (590)
++++|= +.......+++++.+.. ..+..+|.=+|+-.
T Consensus 60 advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 60 PRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566652 22232356666666543 34567888887643
No 212
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=75.03 E-value=17 Score=38.79 Aligned_cols=140 Identities=14% Similarity=0.195 Sum_probs=79.9
Q ss_pred CCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHH
Q 007782 325 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 404 (590)
Q Consensus 325 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e 404 (590)
|..|.++++.|+|.|..|..||+.+..++ |+ ++...|+.. . . .....+ .....+|.|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm-------~V~~~~~~~----~--~---~~~~~~---~~~~~~l~e 196 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM-------PILYNARRH----H--K---EAEERF---NARYCDLDT 196 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------EEEEECCCC----c--h---hhHHhc---CcEecCHHH
Confidence 45689999999999999999999875232 54 355555421 0 0 000011 112247999
Q ss_pred HhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEecCCCCC--c
Q 007782 405 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFD--P 476 (590)
Q Consensus 405 ~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~--wt~G~aifAsGSPF~--p 476 (590)
+++. .|+++=. ...-|.|+++.++.|. +.-++.=.|. .++--|+|+- ..+|+.-.|.=-=|+ |
T Consensus 197 ll~~--sDvv~lh~plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP 267 (323)
T PRK15409 197 LLQE--SDFVCIILPLTDETHHLFGAEQFAKMK---SSAIFINAGR----GPVVDENALIAALQKGEIHAAGLDVFEQEP 267 (323)
T ss_pred HHHh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCC
Confidence 9987 8887631 1223789999999996 5556665544 5555554442 245665433211111 1
Q ss_pred ceeCCeeeCcCCCcccccchhhh
Q 007782 477 FEYNGKVFVPGQANNAYIFPGFG 499 (590)
Q Consensus 477 v~~~G~~~~p~Q~NN~yiFPGig 499 (590)
..-+. . -=...|+.+-|=+|
T Consensus 268 ~~~~~-p--L~~~~nvilTPHia 287 (323)
T PRK15409 268 LSVDS-P--LLSLPNVVAVPHIG 287 (323)
T ss_pred CCCCc-h--hhcCCCEEEcCcCC
Confidence 10010 0 11345888888776
No 213
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=75.01 E-value=29 Score=36.22 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=28.4
Q ss_pred HHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 318 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 318 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+.|++..+. ..+++++|.|+|+.|...+.+.. + .|. ++++.+|+.
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~~ 203 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADVS 203 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeCC
Confidence 455554433 36899999999977766554333 2 363 567777653
No 214
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=74.71 E-value=10 Score=41.10 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=66.5
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007782 308 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 367 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~--------------------g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~ 367 (590)
-||-.+++-+|.++|-. |..+.++||.|+|.|+.|.-||+.|... | ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57777888888887742 3568899999999999999999999763 2 12
Q ss_pred EEEEcCCCcccCCCcC-CCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHH
Q 007782 368 ICLVDSKGLIVSSRKD-SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMA 433 (590)
Q Consensus 368 i~lvD~~GLv~~~R~~-~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma 433 (590)
|. +.+|.. .....+..++. .-++.|...+ .|+|+=..- .-++|+++.+..|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 22 344421 12223334443 3467777765 888874321 12689999999995
No 215
>PRK07411 hypothetical protein; Validated
Probab=74.51 E-value=3.2 Score=45.33 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=34.0
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+|++.||+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 568899999999999999999999875 76 799999987
No 216
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=74.47 E-value=24 Score=40.04 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=29.3
Q ss_pred CcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007782 485 VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 520 (590)
Q Consensus 485 ~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~ 520 (590)
.||..+|-..+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999998888888877788887777654
No 217
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=74.46 E-value=15 Score=38.63 Aligned_cols=105 Identities=13% Similarity=0.227 Sum_probs=57.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 409 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G-~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 409 (590)
.||.|+|+|..|-.|+.-|+.. | ++ .++|+++|+. .+.....+..|--. ...+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~-------~e~~~~l~~~~g~~--~~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS-------EEKRAALAAEYGVV--TTTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC-------HHHHHHHHHHcCCc--ccCcHHHHHhh-
Confidence 5899999999998888877654 5 32 3678777663 11122333444211 13455566654
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 462 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt 462 (590)
.|+++ ++-.| ..=+++++.+....+..+|..+.=.. +.++.-.|.
T Consensus 63 -advv~-LavKP-q~~~~vl~~l~~~~~~~lvISiaAGv-----~~~~l~~~l 107 (266)
T COG0345 63 -ADVVF-LAVKP-QDLEEVLSKLKPLTKDKLVISIAAGV-----SIETLERLL 107 (266)
T ss_pred -CCEEE-EEeCh-HhHHHHHHHhhcccCCCEEEEEeCCC-----CHHHHHHHc
Confidence 66665 44434 23345555555444555555554333 444555553
No 218
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.88 E-value=16 Score=38.92 Aligned_cols=89 Identities=24% Similarity=0.351 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc
Q 007782 308 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 386 (590)
Q Consensus 308 GTaaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 386 (590)
+=.-+|-.|++.=++..|.+|+++++|++|-+ ..|.-+|.||.. .|... ...+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 33456777888888999999999999999986 568888888754 22110 0134443331
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 387 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 387 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.+++|+|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 219
>PRK06932 glycerate dehydrogenase; Provisional
Probab=73.80 E-value=25 Score=37.32 Aligned_cols=138 Identities=16% Similarity=0.192 Sum_probs=82.5
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 405 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 405 (590)
..|.++++.|+|-|..|-.+|+++... |+ +++.+|+..- ... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 468899999999999999999887532 64 4665665310 000 0 113479999
Q ss_pred hcccCCcEEEe----ccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEecCCCCC--cc
Q 007782 406 VKVIKPTILIG----SSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFD--PF 477 (590)
Q Consensus 406 V~~vkPtvLIG----~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~--wt~G~aifAsGSPF~--pv 477 (590)
++. .|+++= +...-|.|+++.+..|. +..++.=.|. .++-=|+|+. ..+|+.-.|.--=|+ |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 987 899883 22334799999999995 6667776554 4555555442 235665444322221 11
Q ss_pred eeCCeeeC-cCCCcccccchhhhH
Q 007782 478 EYNGKVFV-PGQANNAYIFPGFGL 500 (590)
Q Consensus 478 ~~~G~~~~-p~Q~NN~yiFPGigl 500 (590)
.-+.--.. --+..|+.+-|=+|-
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCChhhHhhcCCCCEEECCcccc
Confidence 11100000 013568888887763
No 220
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=73.79 E-value=46 Score=37.88 Aligned_cols=195 Identities=15% Similarity=0.119 Sum_probs=110.9
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcChHHHHHHHHHHHHHHH
Q 007782 297 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 355 (590)
Q Consensus 297 ~~~~~FNDDi---QGTaaV~LAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~ 355 (590)
..+++.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666421 12445567777777653 24568999999999999999999998643
Q ss_pred hcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 007782 356 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 431 (590)
Q Consensus 356 ~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~ 431 (590)
|+ +++.+|+.. ++ +... .+ ... ..+|.|+++. .|+++=.- ..-++|+++.+..
T Consensus 163 --G~-------~V~~~d~~~----~~-~~~~----~~--g~~-~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI----SP-ERAA----QL--GVE-LVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC----Ch-hHHH----hc--CCE-EEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 64 688888742 11 0000 00 001 1278899886 78876332 2236899999999
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccC
Q 007782 432 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 511 (590)
Q Consensus 432 Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~It 511 (590)
|. +..++.=.|.-..--|.---+|++ .|+.-.|.=-=|++--..... --+..|+.+-|=+|-...- -.
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~p--L~~~~nvilTPHia~~t~e-----~~ 287 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPTDSP--LFELPNVVVTPHLGASTAE-----AQ 287 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCCCch--hhcCCCeeEcCccccchHH-----HH
Confidence 96 567777666644333333334443 566543321111100000111 1234689999988743322 23
Q ss_pred HHHHHHHHHHHHcccCcc
Q 007782 512 DDMLLAASEALAKQVTEE 529 (590)
Q Consensus 512 d~M~~aAA~aLA~~v~~~ 529 (590)
..|...+++.+......+
T Consensus 288 ~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGG 305 (526)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 455566666666665543
No 221
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.76 E-value=15 Score=39.32 Aligned_cols=87 Identities=14% Similarity=0.258 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.=++..|.++++++++++|.+ .-|--+|.||... +.. ....+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 346777888888999999999999999986 5688888887531 110 00124444332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 222
>PRK06270 homoserine dehydrogenase; Provisional
Probab=73.46 E-value=26 Score=37.55 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=63.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC---------C
Q 007782 331 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---------P 398 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~---~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~---------~ 398 (590)
-||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+.+.+.-++... ..|+.... .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~Gi~~~~~-~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDGLDLELA-LKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCCCCHHHH-HHHHhccCCcccCccccc
Confidence 5899999999999999998653 22222331 122456799998887653122211 22222111 1
Q ss_pred CCCHHHHhcccCCcEEEeccCC---CCCCCHHHH-HHHHcCCCCcEEE
Q 007782 399 VNNLLDAVKVIKPTILIGSSGV---GRTFTKEVI-EAMASFNEKPLIL 442 (590)
Q Consensus 399 ~~~L~e~V~~vkPtvLIG~S~~---~g~Ft~evv-~~Ma~~~erPIIF 442 (590)
..++.|+++...+||+|=++.. ++-...+++ +++. +.++||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 2378999988889999977653 122234554 4454 4577877
No 223
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=73.38 E-value=13 Score=40.69 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.=++..+.+++++++||+|-+ -.|.-+|.||.. .|. .+.+|.++
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC--------------
Confidence 456667788888999999999999999986 568888887754 242 35555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1358888887 99999999999999999997
No 224
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=73.10 E-value=20 Score=37.83 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=67.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc----cCCCCCHHH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 404 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~~L~e 404 (590)
.-+++.|+|+|.-|..-++.++.. ..+ ++|.+.|+. .+ +...+...+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999888777766653 233 778877764 22 234444444332 122468999
Q ss_pred HhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHHH
Q 007782 405 AVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 458 (590)
Q Consensus 405 ~V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEctpedA 458 (590)
+++. .||++-+++ ...+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9987 999997643 234788888862 2345554 33335799998743
No 225
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=73.06 E-value=16 Score=40.20 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc-
Q 007782 316 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH- 394 (590)
Q Consensus 316 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~- 394 (590)
-+..++.-....|++.|++|+|.+.-.+++++.|.+. .|+.. ..+-+. +.++ +.+.+.-+.+..
T Consensus 276 ~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~ 340 (427)
T PRK02842 276 RARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDG 340 (427)
T ss_pred HHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCC
Confidence 3455566666778899999999998899999998764 37632 111110 0111 101111111111
Q ss_pred ----ccCCCCCHHHHhcccCCcEEEecc
Q 007782 395 ----EHEPVNNLLDAVKVIKPTILIGSS 418 (590)
Q Consensus 395 ----~~~~~~~L~e~V~~vkPtvLIG~S 418 (590)
+..+...+++.|+..|||.|||-|
T Consensus 341 ~~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 341 VRIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred CEEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 112223468899999999999976
No 226
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=72.96 E-value=7.1 Score=32.40 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 378 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~ 378 (590)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999988542 4 6899999887766
No 227
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=72.79 E-value=7.2 Score=40.74 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=56.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCc-----hhchhhccc-cCCCCCHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHE-HEPVNNLLD 404 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~-----~~k~~fA~~-~~~~~~L~e 404 (590)
.||.|+|+|..|..+|..+... | .+++++|+..-...-+...+. ..+..+... .....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998764 5 368888874211000000010 000000000 0001233 4
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCC
Q 007782 405 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQ 450 (590)
Q Consensus 405 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~ 450 (590)
+++ .+|++|=+.... ..+++++.+... .+..+|..++|....
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 454 478777443322 358888888754 455788888897643
No 228
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=72.26 E-value=4.8 Score=41.18 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=28.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999998
No 229
>PLN02527 aspartate carbamoyltransferase
Probab=72.25 E-value=1.2e+02 Score=32.36 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=77.0
Q ss_pred HHhcCCCeeeeeecCCCchHHHHHHHHcCCCceec--cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHH
Q 007782 269 KQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIA 346 (590)
Q Consensus 269 ~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FN--DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA 346 (590)
-.+| .++ |-.-.+......+ +.+| .++||.| |+...==.=+||=++.-.+..| ++++.||+++|.+.=+ -++
T Consensus 93 ls~y-~D~-iviR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-rv~ 166 (306)
T PLN02527 93 VEGY-SDI-IVLRHFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-RTV 166 (306)
T ss_pred HHHh-CcE-EEEECCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-hhH
Confidence 3456 443 3334454444333 3454 4789999 4333333456777776666666 5999999999988532 245
Q ss_pred HHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-C---CCCCHHHHhcccCCcEEEeccCCC
Q 007782 347 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVKVIKPTILIGSSGVG 421 (590)
Q Consensus 347 ~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-~---~~~~L~e~V~~vkPtvLIG~S~~~ 421 (590)
+-++.++.+-.|+ .|.++-.+|+- +++....++++. . ...++.|+++. .||+.-.+.+.
T Consensus 167 ~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q~ 229 (306)
T PLN02527 167 RSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQR 229 (306)
T ss_pred HHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcch
Confidence 5555544332253 57888777761 222222233321 1 12689999997 99999877653
No 230
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.18 E-value=17 Score=38.86 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.=++..|.+++++++|++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 356777888888999999999999999986 578888888854 243 34444332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
..+|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 231
>PLN02602 lactate dehydrogenase
Probab=72.16 E-value=11 Score=40.72 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=75.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCC---CCHHHHhc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 407 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~---~~L~e~V~ 407 (590)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 265 3689999974111111111233322 22211 111 24444 66
Q ss_pred ccCCcEEEeccCCC---CCCCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEec
Q 007782 408 VIKPTILIGSSGVG---RTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 470 (590)
Q Consensus 408 ~vkPtvLIG~S~~~---g~Ft~------------evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~--G~aifAs 470 (590)
. .|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-++++++ =+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 5 89988555543 3 243 7788888999999999999997 344444555542 1336666
Q ss_pred CC
Q 007782 471 GS 472 (590)
Q Consensus 471 GS 472 (590)
|.
T Consensus 179 gt 180 (350)
T PLN02602 179 GT 180 (350)
T ss_pred cc
Confidence 63
No 232
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=72.02 E-value=3.6 Score=43.44 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.0
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
++|++.+|+++|+|..|+-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 457889999999999999999999875 76 899999988
No 233
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=71.67 E-value=8 Score=41.52 Aligned_cols=108 Identities=20% Similarity=0.359 Sum_probs=68.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-CcccCCCcCCCchhchhhc-ccc--CCCCCHHHHh
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWA-HEH--EPVNNLLDAV 406 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~R~~~l~~~k~~fA-~~~--~~~~~L~e~V 406 (590)
.||.++|||..|...|-+|+. .++. +.+.|+|.. +...-...| |.+-. .+. .+. ....+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999998888833 2542 479999987 222211112 33221 111 110 00023 4556
Q ss_pred cccCCcEEEeccC---CCC-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 007782 407 KVIKPTILIGSSG---VGR-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 461 (590)
Q Consensus 407 ~~vkPtvLIG~S~---~~g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~w 461 (590)
+. .|+.|=+.| .+| -.-+++.+++++.+...||+-.|||. |..+|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 65 787774443 344 13467888999999999999999999 77776
No 234
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=71.35 E-value=10 Score=39.57 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=59.1
Q ss_pred CccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch-h----chhhcc-ccCCCC
Q 007782 328 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-F----KKPWAH-EHEPVN 400 (590)
Q Consensus 328 l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~-~----k~~fA~-~~~~~~ 400 (590)
+++.+|+|.|| |-.|..+++.|++. | .+++.+|++-- .. ....+ . +..+.. +..+..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~-----G-------~~V~~~~r~~~---~~-~~~~~~~~~~~~~~~~~~Dl~~~~ 65 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLEL-----G-------AEVYGYSLDPP---TS-PNLFELLNLAKKIEDHFGDIRDAA 65 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHC-----C-------CEEEEEeCCCc---cc-hhHHHHHhhcCCceEEEccCCCHH
Confidence 35678999997 77887777777642 5 35777776521 10 00100 0 001111 212224
Q ss_pred CHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCC-CCcEEEecC
Q 007782 401 NLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 445 (590)
Q Consensus 401 ~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~-erPIIFaLS 445 (590)
++.++++..+||++|=+.+.... .+..+++++...+ .+.+||.=|
T Consensus 66 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 66 KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 67788888899999977764311 1345567666544 457888655
No 235
>PRK07340 ornithine cyclodeaminase; Validated
Probab=71.11 E-value=29 Score=36.61 Aligned_cols=104 Identities=9% Similarity=0.093 Sum_probs=64.0
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCC--CCCHHHH
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 405 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~--~~~L~e~ 405 (590)
....+++|+|+|..|...++.+... .++ ++|+++|+. .++ ...+...+.....+ ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999998888887653 243 578888774 221 22233333211111 3578899
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCCC-CCCCCCCHHH
Q 007782 406 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNP-TSQSECTAEE 457 (590)
Q Consensus 406 V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNP-t~~aEctped 457 (590)
++. .|++|-++... .+|..+ + .+.--|-++.-. ..+.|+.+|-
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~~-~------~~g~hi~~iGs~~p~~~El~~~~ 230 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPEA-A------RAGRLVVAVGAFTPDMAELAPRT 230 (304)
T ss_pred hhc--CCEEEEccCCCCceeCcc-C------CCCCEEEecCCCCCCcccCCHHH
Confidence 975 99999775433 456542 3 244566666542 2468888763
No 236
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=70.77 E-value=6 Score=38.50 Aligned_cols=111 Identities=22% Similarity=0.269 Sum_probs=56.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc--------------cC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--------------HE 397 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~--------------~~ 397 (590)
||.|+|||..|.|||-+++.+ | -++.++|.+---...-.+.+......+.+. ..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 689999999999999999864 6 478888875221100000011100001000 01
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 007782 398 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 461 (590)
Q Consensus 398 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~w 461 (590)
-..+|.+++ . .|.+|=.-.-.--..+++.+.+.+.+..=.||+ || | +-.+..+.-+.
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ila-sn-T--Ssl~i~~la~~ 125 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTILA-SN-T--SSLSISELAAA 125 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE-E-----SSS-HHHHHTT
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceEE-ec-C--CCCCHHHHHhc
Confidence 124677766 3 688876544333456788888887775555553 33 2 33445544333
No 237
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=70.71 E-value=5.4 Score=42.76 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||+++|+|.-|.-||+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 76 799999986
No 238
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=70.50 E-value=9.1 Score=43.56 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=27.9
Q ss_pred CCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 325 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 325 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+.++++.+++|+|||.||-+|+..+.+ .| + +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 456889999999999777666666653 35 2 68888763
No 239
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=70.30 E-value=5.1 Score=37.94 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 334 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 334 v~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+|+|||.||+..|-.|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977754 375 348889987
No 240
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=70.27 E-value=17 Score=39.67 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh
Q 007782 310 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 388 (590)
Q Consensus 310 aaV~LAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 388 (590)
.-+|-.|++.=++-.|.+++++++|++|-+ -.|.-+|.||.. .|. .+.+|.++
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------------- 247 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------------- 247 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC--------------
Confidence 456777888888999999999999999976 568888877754 243 34444332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007782 389 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 430 (590)
Q Consensus 389 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 430 (590)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 248 ----------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 248 ----------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 241
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=70.17 E-value=4.9 Score=45.90 Aligned_cols=165 Identities=19% Similarity=0.280 Sum_probs=82.5
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC-cCCCchhchhhccccCCCCCHHHHh
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-KDSLQHFKKPWAHEHEPVNNLLDAV 406 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R-~~~l~~~k~~fA~~~~~~~~L~e~V 406 (590)
++..|.+++|||+-|++||+-|+.. |+ ++|.+||.--+-+.+- ..+|-.|..--++..+...+-...+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rL 406 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRL 406 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHH
Confidence 4568999999999999999999887 65 7899999754433321 0123222211111111112333444
Q ss_pred cccCCcEE-----EeccCCCCCCCHHHHHHH-------Hc-CCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCC
Q 007782 407 KVIKPTIL-----IGSSGVGRTFTKEVIEAM-------AS-FNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 473 (590)
Q Consensus 407 ~~vkPtvL-----IG~S~~~g~Ft~evv~~M-------a~-~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSP 473 (590)
+.+-|.+- +-.-=.|--..++-++.- .+ ..++-+||=|.--- -+---|.-. ....-+.++-+.-=
T Consensus 407 k~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsR-ESRWLPtll-~a~~~KivINaALG 484 (669)
T KOG2337|consen 407 KEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSR-ESRWLPTLL-AAAKNKIVINAALG 484 (669)
T ss_pred HHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccc-hhhhhHHHH-HhhhcceEeeeecc
Confidence 44445432 111111222333322221 11 23677999875421 122222221 11233555433333
Q ss_pred CCccee--CCeee----CcCCCcccccchhhhHHHHHh
Q 007782 474 FDPFEY--NGKVF----VPGQANNAYIFPGFGLGLVIS 505 (590)
Q Consensus 474 F~pv~~--~G~~~----~p~Q~NN~yiFPGiglG~l~s 505 (590)
|+...+ .|-.. .-+|.-+.-..||==||+..+
T Consensus 485 FDsylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFC 522 (669)
T KOG2337|consen 485 FDSYLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFC 522 (669)
T ss_pred cceeEEEecCCCCcccccccccccccccCcccceeEeE
Confidence 776543 33221 225666666777777777543
No 242
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=70.09 E-value=11 Score=42.44 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=61.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc--cCCCCCHHHHhccc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 409 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~--~~~~~~L~e~V~~v 409 (590)
.|-|+|.|..|..+|..|+.. |. ++++.|+. .+ ..+..++.+... .....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE---KTDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH---HHHHHHhhccCCCCceecCCHHHHHhhc
Confidence 378999999999999999653 63 57777763 11 122222221111 12345788888654
Q ss_pred -CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCC
Q 007782 410 -KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 446 (590)
Q Consensus 410 -kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 446 (590)
+|+++| ++-.+|..+++|++.+..+ .+.-||.=.||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4444556778888887654 56789999998
No 243
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.97 E-value=10 Score=40.36 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=19.2
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~ 351 (590)
.||.|+|||+-|+.+|..+..
T Consensus 8 mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHH
Confidence 789999999999999998864
No 244
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=69.86 E-value=18 Score=38.53 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=82.5
Q ss_pred CCeeeeeecCCCchHHHHHHHHc--CCCceecc--------CCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcCh-HH
Q 007782 274 EKVLIQFEDFANHNAFELLAKYG--TTHLVFND--------DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AG 342 (590)
Q Consensus 274 p~~lIqfEDf~~~~Af~lL~ryr--~~~~~FND--------DiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGs-Ag 342 (590)
-..+|||==...-++-.+|+.-. +++==||- ...+--.+|-+|++--++..+.+|.+.++|++|.+. -|
T Consensus 90 ~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVG 169 (283)
T COG0190 90 DGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVG 169 (283)
T ss_pred cEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCc
Confidence 34567776555555566665532 11111111 133455778899999999999999999999999975 57
Q ss_pred HHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCC
Q 007782 343 TGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGR 422 (590)
Q Consensus 343 ~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g 422 (590)
--+|.+|... +. .+.+|+|+ .++|.+.+++ +|++|-.-|.++
T Consensus 170 kPla~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~ 211 (283)
T COG0190 170 KPLALLLLNA-----NA-------TVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPH 211 (283)
T ss_pred HHHHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcc
Confidence 7788887652 32 24444432 1457788886 999999999999
Q ss_pred CCCHHHHH
Q 007782 423 TFTKEVIE 430 (590)
Q Consensus 423 ~Ft~evv~ 430 (590)
.|+.++|+
T Consensus 212 ~i~~d~vk 219 (283)
T COG0190 212 FIKADMVK 219 (283)
T ss_pred cccccccc
Confidence 99999886
No 245
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=69.80 E-value=28 Score=37.02 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=66.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCHHHH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 405 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~---~~~~~L~e~ 405 (590)
.-.++.|+|+|.-|-.-++.+... . . -++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999876655554331 1 2 3788888874 222 233333332211 224689999
Q ss_pred hcccCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007782 406 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 457 (590)
Q Consensus 406 V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEctped 457 (590)
++. .|++|-++ +....|..++++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 986 89998654 333578888774 566788887544 378999864
No 246
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=69.62 E-value=5.7 Score=42.11 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 76 699999987
No 247
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=69.23 E-value=12 Score=42.14 Aligned_cols=97 Identities=19% Similarity=0.198 Sum_probs=62.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc-c--cCCCCCHHHHhcc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E--HEPVNNLLDAVKV 408 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-~--~~~~~~L~e~V~~ 408 (590)
+|-|+|.|..|.++|..|... |. ++++.|++ .++ .++..+.-.+ . .....++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 689999999999999999753 63 57777763 221 2222211000 0 1134689999976
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 007782 409 I-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 448 (590)
Q Consensus 409 v-kPtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 448 (590)
. +|+++| ++-.++..+++|++.+.. ..+..||.=+||=.
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 4 588555 344455678888877664 35678999999843
No 248
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=69.13 E-value=6.2 Score=39.80 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=24.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
-+|+|+|||.||+..|..|... |+ ++.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhccc
Confidence 4799999999999999888763 65 4777777643
No 249
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=68.99 E-value=24 Score=36.39 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998754 5 368888864
No 250
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=68.92 E-value=8.2 Score=40.80 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=54.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc---ccCCCCCHHHHh
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 406 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~---~~~~~~~L~e~V 406 (590)
-.++.|+|+|.-|..-++.+... .++ ++|++.|+. .. +...+...+.+ +.....++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~---~~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PE---RAEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HH---HHHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hh---HHHHHHHhhccccccceeccchhhhc
Confidence 36999999999988887776654 244 788888864 12 23333333333 112246899999
Q ss_pred cccCCcEEEeccCCC---CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007782 407 KVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 457 (590)
Q Consensus 407 ~~vkPtvLIG~S~~~---g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEctped 457 (590)
+. .|+++-++... .+|+.++++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 98 99999875433 267777776 444566665422 345776653
No 251
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=68.79 E-value=7 Score=41.93 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=28.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999998753 42 2467787765
No 252
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=68.52 E-value=11 Score=39.85 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=72.6
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 007782 335 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 414 (590)
Q Consensus 335 ~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvL 414 (590)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+..-.+.+...-..+-.+.++. .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 58999999999998864 265 36899999842111111112333221121111001123466776 8999
Q ss_pred EeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEecCC
Q 007782 415 IGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGS 472 (590)
Q Consensus 415 IG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G--~aifAsGS 472 (590)
|=+.+.+ |- .=+++++.+.+++..-+|+-.|||.. ....-++++++= +-+|.+|.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt 139 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGT 139 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccc
Confidence 8666654 21 12367788888999999999999983 444555555421 23666654
No 253
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.47 E-value=79 Score=33.14 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=23.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 373 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~ 373 (590)
.+++++|+|+|..|+..+.++...+ |- .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeC
Confidence 5789999999987766655554321 31 46777775
No 254
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=68.41 E-value=25 Score=43.52 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=52.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc------------Cc---EEE--EcCCCccc-CCCcCCCchhch
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---ICL--VDSKGLIV-SSRKDSLQHFKK 390 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~------------~~---i~l--vD~~GLv~-~~R~~~l~~~k~ 390 (590)
.--+|||.|+|..|.|-++.+...-.+ =++.++-+ ++ +|- +.+.-.+. ++... -=+.+.
T Consensus 202 ~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~f~~~~ 278 (1042)
T PLN02819 202 CPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSK-QFDKAD 278 (1042)
T ss_pred CCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCcc-ccchhh
Confidence 358999999999999999988643111 02222211 11 221 11111111 11000 001122
Q ss_pred hhccccCCCCCHH-HHhcccCCcEEEecc----CCCCCCCHH-HHHHHHcC
Q 007782 391 PWAHEHEPVNNLL-DAVKVIKPTILIGSS----GVGRTFTKE-VIEAMASF 435 (590)
Q Consensus 391 ~fA~~~~~~~~L~-e~V~~vkPtvLIG~S----~~~g~Ft~e-vv~~Ma~~ 435 (590)
.|+|+..=...+. +++.. .|+|||.- ..|.++|++ +++.|...
T Consensus 279 y~~~Pe~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~G 327 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRKG 327 (1042)
T ss_pred hccCchhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcCC
Confidence 3333321123454 67776 99999984 345679999 88888743
No 255
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.89 E-value=13 Score=38.90 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||.|+|||+.|+.+|..+.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998653 4 456677764
No 256
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=67.88 E-value=24 Score=37.86 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=62.0
Q ss_pred HhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhh-ccccCCCCC
Q 007782 323 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNN 401 (590)
Q Consensus 323 ~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f-A~~~~~~~~ 401 (590)
..|..+.+.++-|+|.|..|..||+.+. ++ |+ +|...|++.. +...+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 4457789999999999999999999997 43 54 4554555422 1111121 22 123
Q ss_pred HHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007782 402 LLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSN 446 (590)
Q Consensus 402 L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSN 446 (590)
|.|.+++ .|+|+-.. ..-++|+++.++.|. +.-+|.=.|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaR 237 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTAR 237 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCC
Confidence 8888887 89888542 123689999999995 4455554444
No 257
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=67.87 E-value=14 Score=39.56 Aligned_cols=130 Identities=19% Similarity=0.337 Sum_probs=78.1
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC-cccCCCcCCCchhchhhccccC--CCCCH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRKDSLQHFKKPWAHEHE--PVNNL 402 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G-Lv~~~R~~~l~~~k~~fA~~~~--~~~~L 402 (590)
.+.+..||.++|+|..|+.+|-.|+.. |++ +++.++|-.= .+--.++| |+ |-.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 456689999999999999999888753 773 6788999642 12222222 54 3445554311 11233
Q ss_pred HHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC----
Q 007782 403 LDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG---- 464 (590)
Q Consensus 403 ~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G---- 464 (590)
.. -+ ..++.|=+.+.-+. .=+.+|..+.++.+.-|++-.|||. |.++|---
T Consensus 84 ~~-sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLSg 152 (332)
T KOG1495|consen 84 SV-SA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLSG 152 (332)
T ss_pred cc-cC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHcC
Confidence 21 12 24555544443322 2246777778899999999999998 77665211
Q ss_pred ---cEEEecCCCCCcce
Q 007782 465 ---RAIFASGSPFDPFE 478 (590)
Q Consensus 465 ---~aifAsGSPF~pv~ 478 (590)
.-+|.||.-.+...
T Consensus 153 fP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CcccceeccCcCccHHH
Confidence 23455665544443
No 258
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=67.31 E-value=8.5 Score=34.19 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=49.4
Q ss_pred CcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEe
Q 007782 337 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 416 (590)
Q Consensus 337 GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG 416 (590)
|.|..|.+++++|...-.. .+ -+=..++|+++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 8899999999999764211 01 1346677777444432 1111122233468999999888999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007782 417 SSGVGRTFTKEVIEAMASFNEKPLIL 442 (590)
Q Consensus 417 ~S~~~g~Ft~evv~~Ma~~~erPIIF 442 (590)
+++ ....++-+.+.+. +..++|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 955 3344444445554 3345553
No 259
>PRK08618 ornithine cyclodeaminase; Validated
Probab=67.25 E-value=47 Score=35.27 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=61.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc----cCCCCCHHH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 404 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~~L~e 404 (590)
...+++|+|+|..|-.++..+... .++ ++|.++|+. .+| ...+...+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999988777655432 244 778888875 222 22333333211 112467888
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecC-CCCCCCCCCHHHHhc
Q 007782 405 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEEAYT 460 (590)
Q Consensus 405 ~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~aEctpedA~~ 460 (590)
+++. .|++|-++..+ ..|+ +.++ +.--|.++- +--.+.|+.+ +.+.
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~-~~~~ 236 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPS-EAIA 236 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCH-HHHh
Confidence 9975 89988665433 2444 4442 344466663 3225788888 4443
No 260
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=66.86 E-value=19 Score=37.38 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=50.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
.||.|+|+|..|..+|..+... |. ..+++++|++. + .+...++.-.. .....++.++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~~----~---~~~~a~~~g~~-~~~~~~~~~~~~~-- 66 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRSA----E---TRARARELGLG-DRVTTSAAEAVKG-- 66 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECCH----H---HHHHHHhCCCC-ceecCCHHHHhcC--
Confidence 6899999999999999888643 53 13688888742 1 11111110000 0112355666654
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCC
Q 007782 411 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 446 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 446 (590)
+|++| ++... ...+++++.+... .+..+|+-++.
T Consensus 67 aDvVi-iavp~-~~~~~v~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 67 ADLVI-LCVPV-GASGAVAAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHhhCCCCCEEEeCcc
Confidence 67666 33322 2345666665432 33445555444
No 261
>PRK13938 phosphoheptose isomerase; Provisional
Probab=66.46 E-value=21 Score=35.62 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=53.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhc
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 407 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~ee-A~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 407 (590)
++.||.|+|.|..| -+|..+...|.. +++.+- +-..+-+.......+.- .+ =..+-..|++. +.-.+
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~-~n-d~~~~~~~~~~------~~~~~- 111 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAV-AN-DYDYDTVFARA------LEGSA- 111 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHh-hc-cccHHHHHHHH------HHhcC-
Confidence 67999999999887 577777666542 111100 00112222111111100 00 01122223221 22222
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007782 408 VIKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 448 (590)
Q Consensus 408 ~vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 448 (590)
-+-|++|+.|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 112 -~~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 112 -RPGDTLFAISTSGN--SMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred -CCCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35799999999875 999999874 344445554444443
No 262
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=66.13 E-value=5.2 Score=41.83 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=34.4
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 379 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~ 379 (590)
+|++++|+++|.|-.|-=+++.|+. .|+ .+|.++|.+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5889999999999888888777765 486 89999999866544
No 263
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=65.83 E-value=8.2 Score=41.31 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||+++|+|.-|+-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999865 76 889999987
No 264
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=65.22 E-value=25 Score=35.13 Aligned_cols=60 Identities=22% Similarity=0.420 Sum_probs=41.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
||+|.|| |-.|-.+++.+.+. | .+++.+++. ..+ +. ...++.++++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g-------~~v~~~~r~------~~d-~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G-------RVVVALTSS------QLD-LT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C-------CEEEEeCCc------ccC-CC-----------CHHHHHHHHHhCC
Confidence 6899997 98888888887642 5 357777663 111 21 1245778888889
Q ss_pred CcEEEeccCCC
Q 007782 411 PTILIGSSGVG 421 (590)
Q Consensus 411 PtvLIG~S~~~ 421 (590)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999877643
No 265
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=64.91 E-value=8.7 Score=38.97 Aligned_cols=39 Identities=33% Similarity=0.505 Sum_probs=33.6
Q ss_pred CCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 325 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 325 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
-++|++-|++++|+|.-|.-++..++.+ |+ ++++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 3578899999999999999999998875 65 569999987
No 266
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=64.90 E-value=1.6e+02 Score=31.75 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=82.5
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhcccCCcEEEec-CC
Q 007782 402 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFAS-GS 472 (590)
Q Consensus 402 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~aEctpedA~~wt~G~aifAs-GS 472 (590)
+.++=+.+||+++|+.++.+ +.-.-+.+=.++-+|=|.+=.-||-. ..+.|.+++++-+ ..+..+ |-
T Consensus 101 f~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~igK 176 (307)
T COG1250 101 FAELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIGK 176 (307)
T ss_pred HHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcCC
Confidence 33444556799999988754 33333332225556668888999973 4577777776532 111112 31
Q ss_pred CCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHH
Q 007782 473 PFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAA 552 (590)
Q Consensus 473 PF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~ 552 (590)
.||. ..+.||-.=|-..+|.+.-+..+..---.|.+.+-++.+.-+.+ . .-|+.-.+-+...+..
T Consensus 177 --~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~------p----mGpf~l~D~~GlD~~~ 241 (307)
T COG1250 177 --TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGL------P----MGPFELADLIGLDVML 241 (307)
T ss_pred --CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCC------C----ccHHHHHHHHhHHHHH
Confidence 1122 24678888888888888888877776667888777776653322 1 2233334445555555
Q ss_pred HHHHHHHH
Q 007782 553 NVAAKAYE 560 (590)
Q Consensus 553 aVa~~A~~ 560 (590)
.|++..++
T Consensus 242 ~i~~~~~~ 249 (307)
T COG1250 242 HIMKVLNE 249 (307)
T ss_pred HHHHHHHH
Confidence 55555553
No 267
>PRK00536 speE spermidine synthase; Provisional
Probab=64.66 E-value=9.7 Score=39.81 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=59.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCC-CCHHHHhccc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 409 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~-~~L~e~V~~v 409 (590)
.||+|+|+|-.| +++-++.. - +++.|||-++-|++--++.++....-|..+.-.. ..+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-----~-------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-----D-------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-----C-------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999984 55555543 1 3899999999777544344665555443221111 1122211 13
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCC
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF 474 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF 474 (590)
+=||+|-=|. |+++-.+.+. .+++ -+|-.+.-|||||
T Consensus 139 ~fDVIIvDs~----~~~~fy~~~~-----------------------~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 139 KYDLIICLQE----PDIHKIDGLK-----------------------RMLK-EDGVFISVAKHPL 175 (262)
T ss_pred cCCEEEEcCC----CChHHHHHHH-----------------------HhcC-CCcEEEECCCCcc
Confidence 5788886553 6666655543 2333 3566777788887
No 268
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=64.17 E-value=19 Score=37.73 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=71.1
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-CcccCCCcCCCchhchhhcccc-CCCCCHHHHhcccC
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 410 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~vk 410 (590)
|.|+|||..|..+|-.++. .|+ -..+.++|.+ .++..-. .+|.+....+.... ....+ .+.++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999876654 365 2579999973 2211111 12444333321110 01134 356766
Q ss_pred CcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 007782 411 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 472 (590)
Q Consensus 411 PtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt--~G~aifAsGS 472 (590)
.|++|=+.+.+ |- .=+++++.+.++++.-+|+=.|||. ++...-+.+++ +-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 78887554443 21 1245777888899999999999997 34444444442 1233666653
No 269
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=63.80 E-value=25 Score=34.19 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=24.2
Q ss_pred CccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 328 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 328 l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+++++++|.|+ |..|..+|+.+++ .| .+++++|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 56789999996 6666666666653 25 367877764
No 270
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=63.75 E-value=4.6 Score=43.13 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIALE 352 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~ 352 (590)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999998764
No 271
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=63.32 E-value=31 Score=38.23 Aligned_cols=124 Identities=23% Similarity=0.251 Sum_probs=86.2
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC
Q 007782 304 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 383 (590)
Q Consensus 304 DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~ 383 (590)
|.-.||+--++-|++. .|..-+...++|+.|=|--|-|||..+... | | ++++.+-
T Consensus 186 DNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg~-----G-----A--~ViVtEv---------- 240 (420)
T COG0499 186 DNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRGM-----G-----A--RVIVTEV---------- 240 (420)
T ss_pred ccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhcC-----C-----C--eEEEEec----------
Confidence 6678999999999874 566789999999999999999999887432 4 2 3443322
Q ss_pred CCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH----
Q 007782 384 SLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE---- 457 (590)
Q Consensus 384 ~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEctped---- 457 (590)
+|.+.-=|. ++-..-++.||++. .|++|=++|.-++.+.|.++.|. .-.|.+ |-- -.-|+..+.
T Consensus 241 --DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~--N~GHFd~EI~~~~L~~~ 310 (420)
T COG0499 241 --DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILA--NAGHFDVEIDVAGLEEL 310 (420)
T ss_pred --CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEe--cccccceeccHHHHHHh
Confidence 222211121 23334579999998 89999999999999999999995 334433 422 235666654
Q ss_pred Hhccc
Q 007782 458 AYTWS 462 (590)
Q Consensus 458 A~~wt 462 (590)
+.+|.
T Consensus 311 ~~~~~ 315 (420)
T COG0499 311 AVEKR 315 (420)
T ss_pred hhhHh
Confidence 44553
No 272
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=63.11 E-value=8.9 Score=38.26 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+++|+|||.||+..|..+.. .| .++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----AN-------LKTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecc
Confidence 68999999999999988754 25 358899975
No 273
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=62.74 E-value=11 Score=36.14 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=28.9
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+|++.++||+|+|..|.-.++.|+++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 57899999999999999988888763 4 467777543
No 274
>PLN02688 pyrroline-5-carboxylate reductase
Probab=62.52 E-value=46 Score=33.59 Aligned_cols=94 Identities=18% Similarity=0.289 Sum_probs=54.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-cCCCcccCCCcCCCchhchhhcccc-CCCCCHHHHhccc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 409 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lv-D~~GLv~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~v 409 (590)
||.|+|.|..|..||+-|+.. |.- -..+|+++ |+. .++ .+ .+.... ....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~~----~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---RD----VFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---HH----HHHHcCCEEeCChHHHHhc-
Confidence 689999999999999998653 420 02367776 542 111 11 122111 122467787765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 448 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 448 (590)
.|++| ++-.+ ...+++++.++.. .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 66665 33333 4577887777543 3445666665554
No 275
>PRK07877 hypothetical protein; Provisional
Probab=62.36 E-value=15 Score=43.52 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=62.8
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch----------hchhhccc
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----------FKKPWAHE 395 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~----------~k~~fA~~ 395 (590)
.+|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|.+=+=. + +|+. .|..-|+.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~-s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLEL-S---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEcc-c---ccccccCChhhcccHHHHHHHH
Confidence 56889999999998 898899888764 63 26899999884322 1 2444 11111110
Q ss_pred -----cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007782 396 -----HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 396 -----~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 445 (590)
.+. + .++.+.++. .|++|-++-- .=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 000 1 145555554 6777766542 23666677777777888888774
No 276
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=62.23 E-value=11 Score=37.52 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.7
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 373 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~ 373 (590)
+|++.++||+|+|..|.-.++.|..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 57899999999999998888887653 4 47888864
No 277
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=62.05 E-value=32 Score=36.12 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=63.0
Q ss_pred hCCCCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh----------chhh
Q 007782 324 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPW 392 (590)
Q Consensus 324 ~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~----------k~~f 392 (590)
++..++..||+|.|| |-.|.-+++.|+.. | .+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 445577789999997 99999888888752 4 257777753 11111111111 0111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 007782 393 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 393 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 445 (590)
-. +-.+...|.++++. ||++|=+.+.... .|..+++++.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11122356677774 9999988775432 2457888887766578998754
No 278
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=61.80 E-value=12 Score=35.50 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=56.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
.||-|+|.|..|.+||+.|... |. +++..|+. . +..+.....- .....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~---~~~~~~~~~g---~~~~~s~~e~~~~-- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----P---EKAEALAEAG---AEVADSPAEAAEQ-- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----H---HHHHHHHHTT---EEEESSHHHHHHH--
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----h---hhhhhhHHhh---hhhhhhhhhHhhc--
Confidence 5899999999999999999643 53 57777753 1 1122222111 2234689999988
Q ss_pred CcEEEeccCCCCCCCHHHHHH--H-HcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 007782 411 PTILIGSSGVGRTFTKEVIEA--M-ASFNEKPLILALSNPTSQSECTAEEAYT 460 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~--M-a~~~erPIIFaLSNPt~~aEctpedA~~ 460 (590)
.|++|=+-.-+ .=.++++.. + +...+..||.=+|+-+ +|.+-+-+-.
T Consensus 58 ~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~ 107 (163)
T PF03446_consen 58 ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAER 107 (163)
T ss_dssp BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHH
T ss_pred ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhh
Confidence 57776432211 123444444 3 3345666777777755 5555544433
No 279
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=61.76 E-value=54 Score=35.40 Aligned_cols=137 Identities=18% Similarity=0.245 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceeccC-CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcCh
Q 007782 262 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD-IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 340 (590)
Q Consensus 262 defv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDD-iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGs 340 (590)
.+.+..+ .+| .++++ +-.+. +.+.+.+.+| .++||.|-+ -.-=-.=+|+=++.-.+..|+++++.||.++|-+.
T Consensus 92 ~DTarvl-s~y-~D~iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~ 166 (334)
T PRK01713 92 KDTARVL-GRM-YDAIE-YRGFK-QSIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDAR 166 (334)
T ss_pred HHHHHHH-HHh-CCEEE-EEcCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCc
Confidence 3344333 446 44443 23333 2334444454 478999942 22223346777777777777789999999999875
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc----CCCCCHHHHhcccCCcEEEe
Q 007782 341 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIG 416 (590)
Q Consensus 341 Ag~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~----~~~~~L~e~V~~vkPtvLIG 416 (590)
- ++++-++.++.+ .|+ +|.++-.+++.-.+ ..-+.-+.+++.. ....++.++++. .||+.-
T Consensus 167 ~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt 231 (334)
T PRK01713 167 N--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA---SLVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHT 231 (334)
T ss_pred c--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEE
Confidence 3 478877776665 475 68888888773321 1111122333321 123689999997 999997
Q ss_pred cc
Q 007782 417 SS 418 (590)
Q Consensus 417 ~S 418 (590)
.+
T Consensus 232 ~~ 233 (334)
T PRK01713 232 DV 233 (334)
T ss_pred cc
Confidence 53
No 280
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=61.55 E-value=12 Score=39.94 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=42.4
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCc-ChHHHHHHHHHHH
Q 007782 306 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 351 (590)
Q Consensus 306 iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~li~~ 351 (590)
--+||-++.-+++.+...+|..|++.++-|+|| |..|.+||+.|..
T Consensus 143 ns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 143 NSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred CccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 347999999999999999999999999999998 9999999999965
No 281
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=61.53 E-value=10 Score=40.51 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
.+|+|+|||-+|+.+|-.|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988753 5 4688999864
No 282
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=61.40 E-value=36 Score=36.86 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhh
Q 007782 313 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 392 (590)
Q Consensus 313 ~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f 392 (590)
+.|+.++|=.+..++. -++.|+|+|.-+-..++.+.. ..++ .+|++.|+. .+....+...+
T Consensus 115 aAasavAa~~LA~~da--~~laiIGaG~qA~~ql~a~~~----v~~~------~~I~i~~r~-------~~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKDA--STLAIIGAGAQARTQLEALKA----VRDI------REIRVYSRD-------PEAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCCC--cEEEEECCcHHHHHHHHHHHh----hCCc------cEEEEEcCC-------HHHHHHHHHHH
Confidence 3456677666666543 478899999866555444433 2343 677777664 11122222222
Q ss_pred ccc----cCCCCCHHHHhcccCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 007782 393 AHE----HEPVNNLLDAVKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 460 (590)
Q Consensus 393 A~~----~~~~~~L~e~V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~ 460 (590)
.+. .....+++++|+. .|+++.++ +...+|..++|+. .--|.-.=||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~-----G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP-----GTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC-----CcEEEecCCCCcccccCCHHHHHh
Confidence 222 2345799999998 99999875 3335888888871 222333345777899999976544
No 283
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=61.21 E-value=10 Score=40.65 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=26.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 377 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv 377 (590)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 79999999999999998443 123 578899887443
No 284
>PRK06046 alanine dehydrogenase; Validated
Probab=60.45 E-value=49 Score=35.13 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=64.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc----cCCCCCHHH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 404 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~~L~e 404 (590)
.-.++.|+|+|..|...++.+... .++ ++++++|++- + +.+.+...+... .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~~----~---~~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRTK----S---SAEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCCH----H---HHHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988777666432 233 7889888851 2 123333333211 112357888
Q ss_pred HhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 007782 405 AVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 457 (590)
Q Consensus 405 ~V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEctped 457 (590)
+++ .|+++-++. ...+|..+.++ +.-.|-++ |+-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 788886653 33578888775 33346666 4544689999874
No 285
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=60.17 E-value=12 Score=37.31 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+|+++|+||+|+|..|..-++.|+.+ | -+|.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999999888764 5 368888764
No 286
>PRK06823 ornithine cyclodeaminase; Validated
Probab=59.94 E-value=61 Score=34.57 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=67.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc---cCCCCCHHHH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 405 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~---~~~~~~L~e~ 405 (590)
.-.++.++|+|.-+-..++.++.. + .+ ++|++.|+. .++ ...+...+.+. .....+.+|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v--~--~i------~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV--T--DC------RQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc--C--CC------CEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 347999999999988888776553 1 22 788888764 222 22333222111 1123689999
Q ss_pred hcccCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHHH
Q 007782 406 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 458 (590)
Q Consensus 406 V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEctpedA 458 (590)
++. .||++-++ +...+|..++++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 987 99998754 333578888886 555677776433 4789998654
No 287
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=59.70 E-value=33 Score=38.62 Aligned_cols=111 Identities=11% Similarity=0.013 Sum_probs=65.4
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHH-HHH-hcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhc
Q 007782 331 HRFLFLGA-GEAGTGIAELIALE-ISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 407 (590)
Q Consensus 331 ~riv~~GA-GsAg~GIA~li~~~-~~~-~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 407 (590)
.||.|+|| |..|..+|-.|+.. +.. .+|+ -..+.++|.+-=..++-.-+|.+-.-++-++..-..+-.+..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 79999999 99999999988653 100 0133 2468888874211111111133322233221110123346677
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHc-CCCCcEEEecCCCC
Q 007782 408 VIKPTILIGSSGVG---RT-----------FTKEVIEAMAS-FNEKPLILALSNPT 448 (590)
Q Consensus 408 ~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~-~~erPIIFaLSNPt 448 (590)
. .|++|=+.+.+ |- .=+++.+.+.+ .+..-||+-.|||-
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 6 88888666654 21 12467777788 58999999999997
No 288
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=59.31 E-value=6.1 Score=41.44 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=26.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
+|||+|+|.||+-.|+.+.... . ..-+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5999999999998888875421 0 1357999997754
No 289
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=59.08 E-value=11 Score=40.80 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.9
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007782 332 RFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~ 351 (590)
+|+|+|||.||...|..+..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~ 21 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS 21 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh
Confidence 69999999999999988764
No 290
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=58.51 E-value=8.9 Score=40.08 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..+-|+|||-.|-|||+..+.. |+ ++|++|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 5678999999999999988764 65 69999975
No 291
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=58.46 E-value=18 Score=39.06 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007782 332 RFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~ 351 (590)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999965
No 292
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.13 E-value=32 Score=35.36 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=25.1
Q ss_pred CCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 325 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 325 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+..+++.++||.||++ ||...++..+.+ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CC-------CEEEEEECC
Confidence 4567789999999843 444444444444 36 368888775
No 293
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=57.70 E-value=10 Score=35.55 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.1
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 334 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 334 v~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998864 1123568999999655
No 294
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=57.42 E-value=12 Score=39.84 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.6
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007782 332 RFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~ 351 (590)
.|+|+|||.||...|..+.+
T Consensus 2 DVvIVGaGpAG~~aA~~La~ 21 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR 21 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 58999999999999988764
No 295
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=57.24 E-value=29 Score=36.27 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=54.5
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc--hhhccccCCCCCHHHH
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK--KPWAHEHEPVNNLLDA 405 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k--~~fA~~~~~~~~L~e~ 405 (590)
-...||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+.-.. ..+-.......+-.+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 69 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAED 69 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhh
Confidence 3456899999999999999888653 4 34555555321 110000110000 0000000001111122
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007782 406 VKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 449 (590)
Q Consensus 406 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 449 (590)
+. .+|++| ++... .-++++++.++.. .+..+|+.|-|=-.
T Consensus 70 ~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 70 MP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred cC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 33 367776 44432 3478888888653 35678888988664
No 296
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=56.45 E-value=21 Score=38.69 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=46.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc--ccCCCcC--CCchhchhhccccCCCCCHHHHh
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKD--SLQHFKKPWAHEHEPVNNLLDAV 406 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL--v~~~R~~--~l~~~k~~fA~~~~~~~~L~e~V 406 (590)
.+|.|+|||+=|+.+|..+.+. |- .=++|..|.+=. |-.+|.+ .|+.. .+...-.-..+|.+++
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~N~~yLp~i--~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRENPKYLPGI--LLPPNLKATTDLAEAL 69 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCcCccccCCc--cCCcccccccCHHHHH
Confidence 5899999999999999999764 41 235776654310 1122211 11110 0100011124677777
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHH
Q 007782 407 KVIKPTILIGSSGVGRTFTKEVIEAMA 433 (590)
Q Consensus 407 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma 433 (590)
+. ---+|++++++ +..++++.|.
T Consensus 70 ~~-ad~iv~avPs~---~~r~v~~~l~ 92 (329)
T COG0240 70 DG-ADIIVIAVPSQ---ALREVLRQLK 92 (329)
T ss_pred hc-CCEEEEECChH---HHHHHHHHHh
Confidence 75 12344555553 4666776664
No 297
>PRK12828 short chain dehydrogenase; Provisional
Probab=56.28 E-value=19 Score=34.48 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=23.8
Q ss_pred CCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
++++.+++|.|| |..|..+++.++ + .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~----~-~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA----A-RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 467789999998 555555555554 3 253 57888774
No 298
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=56.18 E-value=11 Score=41.17 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999642 11 1367777775
No 299
>PRK06184 hypothetical protein; Provisional
Probab=55.95 E-value=14 Score=40.88 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=26.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
++..|+|+|||.+|+..|-+|.. .|+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 45789999999999999988765 375 46677765
No 300
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=55.83 E-value=17 Score=36.70 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999998876 36 47999999833
No 301
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=55.77 E-value=38 Score=36.19 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.7
Q ss_pred CccceEEEeCcChHHHHHHHHHHH
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~ 351 (590)
|++.||.|+|+|.-|-++|..|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578999999999999999999875
No 302
>PRK06847 hypothetical protein; Provisional
Probab=55.75 E-value=15 Score=38.37 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.2
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007782 330 EHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~ 351 (590)
..+|+|+|||.||+..|..|..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4689999999999999988764
No 303
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=55.70 E-value=52 Score=35.77 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=26.7
Q ss_pred cceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~G-AGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..||.|+| +|..|..+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899999 999999999998753 53 47888874
No 304
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.70 E-value=17 Score=39.97 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.3
Q ss_pred HhCCCCccceEEEeCcChHHHHHHHHHHH
Q 007782 323 LIGGTLAEHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 323 ~~g~~l~d~riv~~GAGsAg~GIA~li~~ 351 (590)
..|.+++.++++|+|+|.+|+.+|+.+.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 34566788999999999999999988864
No 305
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=55.44 E-value=37 Score=37.04 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||.|+|+|..|..+|..+... | .+++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 799999999999999988753 5 357778864
No 306
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=55.43 E-value=22 Score=40.35 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=27.9
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+-.+.+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3467899999999999999887754 263 47788854
No 307
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=55.38 E-value=55 Score=32.73 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=43.8
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh----chhhcc-ccCCCCCHHHH
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----KKPWAH-EHEPVNNLLDA 405 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~----k~~fA~-~~~~~~~L~e~ 405 (590)
||+|.|| |..|-.+++.|+.. |- ..+++.+|+... ..+.+.+... ...+-. +.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5888997 88888888777543 31 136777775211 0111111111 011111 22223467888
Q ss_pred hcccCCcEEEeccCCC
Q 007782 406 VKVIKPTILIGSSGVG 421 (590)
Q Consensus 406 V~~vkPtvLIG~S~~~ 421 (590)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 308
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=55.38 E-value=44 Score=34.53 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=50.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 409 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G-~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 409 (590)
+||.|+|+|..|..+|..+... | ++ ..+++++|++-- +.+...+..+. ......+..++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~~------~~~~~l~~~~~-~~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSKN------EHFNQLYDKYP-TVELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCcH------HHHHHHHHHcC-CeEEeCCHHHHHhh-
Confidence 4799999999999999988653 4 21 246777776310 11111111110 00112355566553
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 448 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 448 (590)
+|++| ++..+ ...+++++.++.+ .+..+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 56665 33333 3355566655432 2233455555544
No 309
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=55.26 E-value=26 Score=38.88 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhc----
Q 007782 318 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---- 393 (590)
Q Consensus 318 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA---- 393 (590)
..++.-....|++.|+++++.+.-..++++++.+ .|+. +..+.+. .... ++....+....
T Consensus 314 ~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~-~d~~~l~~~~~~~~~ 377 (456)
T TIGR01283 314 RPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTE-EDYARIRELMGEGTV 377 (456)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCH-HHHHHHHHHcCCCeE
Confidence 4444445567889999999888888999988754 4873 2222111 1111 10011111110
Q ss_pred -cccCCCCCHHHHhcccCCcEEEec
Q 007782 394 -HEHEPVNNLLDAVKVIKPTILIGS 417 (590)
Q Consensus 394 -~~~~~~~~L~e~V~~vkPtvLIG~ 417 (590)
.+..+...+.+.++..+||++||-
T Consensus 378 v~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 378 MLDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEEc
Confidence 011122357888899999999985
No 310
>PLN02268 probable polyamine oxidase
Probab=55.23 E-value=6.4 Score=42.45 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=27.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcC--CChhhhcCc----EEEEcCCCc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTK--APVEETRKK----ICLVDSKGL 376 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G--~s~eeA~~~----i~lvD~~GL 376 (590)
+|+|+|||-||+..|..|.+. | +..=||+.| ++-....|.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-----g~~v~vlEa~~r~GGri~t~~~~g~ 47 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-----SFKVTLLESRDRIGGRVHTDYSFGF 47 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-----CCeEEEEeCCCCCCceeeecCcCCc
Confidence 799999999999999999763 4 344566554 454444443
No 311
>PRK07236 hypothetical protein; Provisional
Probab=55.21 E-value=17 Score=38.62 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.4
Q ss_pred CccceEEEeCcChHHHHHHHHHHHH
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALE 352 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~ 352 (590)
.+..+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC
Confidence 4568999999999999999988763
No 312
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=54.92 E-value=69 Score=30.56 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.8
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMA 433 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma 433 (590)
+-|++|++|..| -|+++++.+.
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHH
Confidence 469999999877 4999999985
No 313
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=54.46 E-value=17 Score=39.65 Aligned_cols=86 Identities=9% Similarity=0.139 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc---
Q 007782 318 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--- 394 (590)
Q Consensus 318 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~--- 394 (590)
..++.-....|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... ++....+..+..
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3344444456778999999988888999987643 4873 2222111 1111 111111111100
Q ss_pred --ccCCCCCHHHHhcccCCcEEEeccC
Q 007782 395 --EHEPVNNLLDAVKVIKPTILIGSSG 419 (590)
Q Consensus 395 --~~~~~~~L~e~V~~vkPtvLIG~S~ 419 (590)
...+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 0111124668889999999999755
No 314
>PLN02240 UDP-glucose 4-epimerase
Probab=54.26 E-value=26 Score=36.19 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=59.1
Q ss_pred CCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCch------hchhhcc-ccCC
Q 007782 327 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 398 (590)
Q Consensus 327 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~------~k~~fA~-~~~~ 398 (590)
.|+..||+|.|| |--|..+++.|++. | .+++++|+..--.......+.. .+..+.. +...
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 77888888777642 4 3678887542100000000000 0011111 1122
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 007782 399 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 399 ~~~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 445 (590)
..++.++++..+||++|=+.+.... -+..++++|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2356777777789999977764321 1235667776665567887543
No 315
>PRK07233 hypothetical protein; Provisional
Probab=54.25 E-value=14 Score=39.17 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888653 5 367777776
No 316
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.19 E-value=16 Score=38.08 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=19.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIALE 352 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~ 352 (590)
.||.|+|||..|.|||.+++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 4899999999999999988754
No 317
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=54.10 E-value=26 Score=37.05 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=25.7
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCC
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPT 448 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFaLSNPt 448 (590)
+-|++||+|..|. |+++++.+.... .-|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999886 899998885433 335544344555
No 318
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=54.10 E-value=18 Score=39.86 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.9
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+.+..+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4567899999999999999988854 25 368888874
No 319
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.97 E-value=20 Score=40.41 Aligned_cols=104 Identities=17% Similarity=0.303 Sum_probs=65.3
Q ss_pred CCCCcccchhhhHHHHHHhcCCCCCceeeEEe-ecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe
Q 007782 198 LGCQGMGIPVGKLALYTALGGIRPSACLPITV-DVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 276 (590)
Q Consensus 198 lG~~GmgI~iGKl~LYta~gGI~P~~~LPI~L-DvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~ 276 (590)
.|+-|. ||+++-.|.|+-=--...-+.| .|+.| .+ +...+ ...= ++-
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n-~d-----------------------Lr~LL---~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD-SD-----------------------LRHLL---LATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc-HH-----------------------HHHHH---HhCC-CCc
Confidence 466554 7999999999865333555556 56633 21 23333 2333 788
Q ss_pred eeeeecCCCchHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCc
Q 007782 277 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 338 (590)
Q Consensus 277 lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GA 338 (590)
+|-.|||.. +|.+=++-..+-.-|++ .-.-|+|+||||++--.-..-.|.||+|+=.
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 999999954 45554444444333333 4667999999999765444555688888754
No 320
>PRK12829 short chain dehydrogenase; Provisional
Probab=53.76 E-value=42 Score=32.87 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=22.9
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+++.+++|.||.. ||...++..+.+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g---~iG~~~a~~L~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGAS---GIGRAIAEAFAE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCC---cHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 37889999999841 333444444433 363 58887753
No 321
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=53.74 E-value=24 Score=36.50 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=28.6
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007782 409 IKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 448 (590)
Q Consensus 409 vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 448 (590)
-+-|++||.|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 117 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35799999999885 899998874 444567776667776
No 322
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=53.69 E-value=44 Score=36.19 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCccceEEEeCcChHHHHHHHHHHH
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~ 351 (590)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678999999999999999999865
No 323
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=53.67 E-value=1.7e+02 Score=34.74 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=84.2
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEecCCCC
Q 007782 403 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPF 474 (590)
Q Consensus 403 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------aEctpedA~~wt~G~aifAsGSPF 474 (590)
.+.-+.++|+++|..++.+ +.-.-+.+-.++-+|=|.+=.-||... .+-|.++++++... |+..-=.
T Consensus 404 ~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~~gk 478 (699)
T TIGR02440 404 KDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVA---LAKKQGK 478 (699)
T ss_pred HHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcCC
Confidence 3444557899999887754 444333333356677788888998742 34465666554321 2221224
Q ss_pred CcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHH
Q 007782 475 DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANV 554 (590)
Q Consensus 475 ~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aV 554 (590)
.||..+ ..||-.=|-.++|-+--++.+..-- ++.+-+-.|.+.+ |.-..|+.-+..+-..+...|
T Consensus 479 ~pv~v~---d~pGfi~nRl~~~~~~Ea~~l~~~G-~~~~dID~a~~~~-----------G~p~GPf~l~D~vGld~~~~i 543 (699)
T TIGR02440 479 TPIVVA---DKAGFYVNRILAPYMNEAARLLLEG-EPVEHIDKALVKF-----------GFPVGPITLLDEVGIDVGAKI 543 (699)
T ss_pred eEEEEc---cccchHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHc-----------CCCcCHHHHHHHhchHHHHHH
Confidence 566553 4688888888888776665555433 4666666665421 111234443444455555555
Q ss_pred HHHHHHc-CCCCCCCCchhHHHHHHh
Q 007782 555 AAKAYEL-GVATRLPRPQNLVKCAES 579 (590)
Q Consensus 555 a~~A~~~-G~a~~~~~~~dl~~~i~~ 579 (590)
.+..+++ |- ....|.-+.+.+++
T Consensus 544 ~~~l~~~~~~--~~~~~~~l~~~v~~ 567 (699)
T TIGR02440 544 SPILEAELGE--RFKAPAVFDKLLSD 567 (699)
T ss_pred HHHHHHhcCC--CCCCcHHHHHHHHC
Confidence 5544432 22 12223445555555
No 324
>PRK05993 short chain dehydrogenase; Provisional
Probab=53.51 E-value=28 Score=35.07 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=20.5
Q ss_pred cceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..++||.|| |..|..+|+.++ + .| -++++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~----~-~G-------~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQ----S-DG-------WRVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHH----H-CC-------CEEEEEECC
Confidence 357999998 445555555543 3 36 368887764
No 325
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=53.48 E-value=19 Score=38.93 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=28.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 377 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv 377 (590)
.||||+|+|.||+..|..+.+. |- .-+|.++|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999987542 21 1378899887543
No 326
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.47 E-value=57 Score=35.73 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=63.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh--chhhccccCCCCCHHHHh
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAHEHEPVNNLLDAV 406 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~--k~~fA~~~~~~~~L~e~V 406 (590)
+|-.|+|+|.|-.|+++|++|.+ .|. ++...|.+-- ....+.|... ..++... ..+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~-----~G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~~---~~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR-----QGI-------PFAVMDSREQ--PPGLDTLAREFPDVELRCG---GFD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh-----CCC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEeC---CCC-hHHh
Confidence 57789999999999998888764 363 5778886420 0000112110 1111100 011 2334
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeee
Q 007782 407 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 484 (590)
Q Consensus 407 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 484 (590)
+ ++|++|=.++.+ --.+++.++.. ...||+ +.+|.- +.....+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~--~~i~i~-------~~~el~----~~~~~~~~I~VTGT-------~GKTT 121 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAA--MGIEVI-------GDIELF----AREAKAPVIAITGS-------NGKST 121 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHHH----HHhcCCCEEEEECC-------CcHHH
Confidence 4 478887666665 34677777654 456776 223332 22235577888997 67654
No 327
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=53.41 E-value=1.5e+02 Score=35.13 Aligned_cols=103 Identities=17% Similarity=0.046 Sum_probs=55.6
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEecCCCCCcce
Q 007782 407 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFDPFE 478 (590)
Q Consensus 407 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------aEctpedA~~wt~G~aifAsGSPF~pv~ 478 (590)
+.++|+++|..++.+ +.-.-+.....+-+|=|.+=.-||-.. .+-|-+++.++... |+..-=..||.
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~---~~~~~gk~pv~ 487 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA---LAKKQGKTPIV 487 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH---HHHHcCCceEE
Confidence 457899999877743 444444444445566688888998752 23343444332110 11111133454
Q ss_pred eCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHH
Q 007782 479 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 518 (590)
Q Consensus 479 ~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aA 518 (590)
. ...||..=|-..+|-+--++.+...- ++.+-+-.|
T Consensus 488 v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a 523 (708)
T PRK11154 488 V---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAA 523 (708)
T ss_pred E---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH
Confidence 4 24667777777777665555554432 354444444
No 328
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=53.35 E-value=6.4 Score=42.10 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=51.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhch-------hhcc-ccCCCCCHHH
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-------PWAH-EHEPVNNLLD 404 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~-------~fA~-~~~~~~~L~e 404 (590)
|+|+|+|..|-.+++.|++. ... .++.+.|++ .++ +..... .+.+ +..+..+|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~---~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEK---AERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHH---HHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHH---HHHHHhhccccceeEEEEecCCHHHHHH
Confidence 79999999999999988653 111 278888875 111 111111 1111 1122235888
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007782 405 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 442 (590)
Q Consensus 405 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 442 (590)
.+++ .|++|-+++.. +...++++-.+. ..+.|=
T Consensus 64 ~~~~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 64 LLRG--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp HHTT--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred HHhc--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 8887 69999988755 788888875442 334444
No 329
>PRK08163 salicylate hydroxylase; Provisional
Probab=53.16 E-value=17 Score=38.44 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.0
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007782 330 EHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~ 351 (590)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988764
No 330
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=52.97 E-value=40 Score=34.66 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||.|+|+|..|..+|..+... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 53 57777765
No 331
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=52.93 E-value=15 Score=40.84 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.1
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+.|++-+|+++|+|..|+-+++.|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999999875 76 789999987
No 332
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=52.47 E-value=85 Score=29.58 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=25.3
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 448 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 448 (590)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999977 5999988864 344455555444444
No 333
>PRK09126 hypothetical protein; Provisional
Probab=52.44 E-value=17 Score=38.31 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.2
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007782 330 EHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~ 351 (590)
+..|+|+|||.||+..|-.|.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 4579999999999999988865
No 334
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.32 E-value=66 Score=36.08 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=50.1
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhc
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 407 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 407 (590)
+.++|++|+|.|..|+..++++.. .|. ++.+.|.+ ..+ +...++.-++- .......+.++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~-----~G~-------~v~~~D~~----~~~---~~~l~~~g~~~-~~~~~~~~~l~ 69 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTR-----FGA-------RPTVCDDD----PDA---LRPHAERGVAT-VSTSDAVQQIA 69 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHH-----CCC-------EEEEEcCC----HHH---HHHHHhCCCEE-EcCcchHhHhh
Confidence 457899999999999999976653 363 57778854 111 11111100000 01112234454
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 007782 408 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 441 (590)
Q Consensus 408 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPII 441 (590)
. .|++|=.++.+ .-++++.++.. ..-||+
T Consensus 70 ~--~D~VV~SpGi~-~~~p~~~~a~~--~gi~v~ 98 (488)
T PRK03369 70 D--YALVVTSPGFR-PTAPVLAAAAA--AGVPIW 98 (488)
T ss_pred c--CCEEEECCCCC-CCCHHHHHHHH--CCCcEe
Confidence 3 68888666766 34666665544 356776
No 335
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=51.98 E-value=19 Score=39.92 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=28.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
+.-+++|+|||.+|+++|..|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 456899999999999999988764 763 377888764
No 336
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=51.84 E-value=45 Score=32.59 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.++..+++|.|| |..|..+++.+++ .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 356788999998 5555555555543 363 57777764
No 337
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=51.82 E-value=53 Score=38.85 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=62.4
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhcccCCcEEEecCCCCC
Q 007782 404 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFASGSPFD 475 (590)
Q Consensus 404 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~aEctpedA~~wt~G~aifAsGSPF~ 475 (590)
++=+.++|+++|.+++.. +.-.-+.....+-+|=|.+=..||-. ..+-|.++.+++... |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCc
Confidence 333557899999887753 55444444444555668888999963 244455444443211 11211245
Q ss_pred cceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007782 476 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 519 (590)
Q Consensus 476 pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA 519 (590)
||..+ ..||-.=|-..+|-+--++.+...- .|.+.+-+|.
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 66552 6788888888888766555444433 5666666554
No 338
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=51.59 E-value=20 Score=39.74 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=27.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+.+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 46799999999999999888764 25 368888875
No 339
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=51.58 E-value=15 Score=39.07 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=48.6
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC----CCCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE----PVNN 401 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~----~~~~ 401 (590)
++|+.-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-+ ..+ +|. ..|-.+.+ ....
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL~---RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DVC---TNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hhc---cccccccccCCcHHHH
Confidence 568889999999999999999998775 76 78999998732 221 232 12222111 1124
Q ss_pred HHHHhcccCCcEEEe
Q 007782 402 LLDAVKVIKPTILIG 416 (590)
Q Consensus 402 L~e~V~~vkPtvLIG 416 (590)
..+-++...|+|-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 566677777887773
No 340
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=51.57 E-value=18 Score=37.19 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
.+..++|+|||.||+..|-.+.. .|+ ++.++|++-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 35789999999999999887754 364 688888764
No 341
>PRK06475 salicylate hydroxylase; Provisional
Probab=51.47 E-value=17 Score=38.93 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=18.5
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~ 351 (590)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 899999999999999877754
No 342
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=51.42 E-value=46 Score=35.56 Aligned_cols=97 Identities=19% Similarity=0.119 Sum_probs=57.6
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh--chhhcc-ccCCCCCHHH
Q 007782 329 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 404 (590)
Q Consensus 329 ~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~--k~~fA~-~~~~~~~L~e 404 (590)
+++||+|.|+ |-.|..+++.|.+. | -+++.+|+..- ..+... ...+-. +..+..++.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-----G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-----G-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-----C-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 99998888888652 5 36888886421 001110 111111 1111223455
Q ss_pred HhcccCCcEEEeccCCCC--C---------------CCHHHHHHHHcCCCCcEEEecC
Q 007782 405 AVKVIKPTILIGSSGVGR--T---------------FTKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 405 ~V~~vkPtvLIG~S~~~g--~---------------Ft~evv~~Ma~~~erPIIFaLS 445 (590)
+++ ++|++|=+.+..+ - .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 554 5899998765431 1 2356777777776678998654
No 343
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=51.20 E-value=16 Score=38.79 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.5
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007782 330 EHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~ 351 (590)
+.+|+|+|||.||+..|-.|.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc
Confidence 4689999999999999988865
No 344
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=51.03 E-value=46 Score=35.75 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=26.1
Q ss_pred CHHHHhcccCCcE-EEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007782 401 NLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEKPLIL 442 (590)
Q Consensus 401 ~L~e~V~~vkPtv-LIG~S~~~g~Ft~evv~~Ma~~~erPIIF 442 (590)
.|.+.... .|+ ++|.|-..+ |...++++|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 45566665 787 677665333 5556899998 7889997
No 345
>PRK06392 homoserine dehydrogenase; Provisional
Probab=50.99 E-value=60 Score=34.96 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=49.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHH-HhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc---ccCCCC--CHHHH
Q 007782 332 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVN--NLLDA 405 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~-~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~---~~~~~~--~L~e~ 405 (590)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+-+.|++|-+.+.+.=++.+....-.+ ...... ++.+.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~l 77 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEI 77 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHH
Confidence 79999999999999999876210 112321 122556799998887653223221111110 001112 56666
Q ss_pred hcccCCcEEEeccC
Q 007782 406 VKVIKPTILIGSSG 419 (590)
Q Consensus 406 V~~vkPtvLIG~S~ 419 (590)
++ .+|||+|=+++
T Consensus 78 l~-~~~DVvVE~t~ 90 (326)
T PRK06392 78 FE-IKPDVIVDVTP 90 (326)
T ss_pred hc-CCCCEEEECCC
Confidence 65 58999998874
No 346
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=50.98 E-value=19 Score=41.76 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=28.1
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
-.+.||+|+|+|.||+..|..|... |. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 3578999999999999999888752 53 47788874
No 347
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=50.76 E-value=19 Score=38.72 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 377 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv 377 (590)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999998764 54 35566665443
No 348
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=50.70 E-value=21 Score=39.93 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCccceEEEeCcChHHHHHHHHHHH
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~ 351 (590)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456899999999999999988865
No 349
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=50.66 E-value=18 Score=38.38 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
.+|||+|+|.||+..|+.|... + ..-+|.+++++.-
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCCC
Confidence 4899999999999999988542 2 1247888876543
No 350
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=50.53 E-value=31 Score=36.55 Aligned_cols=39 Identities=28% Similarity=0.299 Sum_probs=28.2
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCCC
Q 007782 409 IKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPTS 449 (590)
Q Consensus 409 vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt~ 449 (590)
-+-|++||+|..|. |++++.++. +...-|+|.=-+||.+
T Consensus 130 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 130 TAKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 35799999999875 999999885 3334466665566763
No 351
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=50.53 E-value=30 Score=36.23 Aligned_cols=144 Identities=19% Similarity=0.287 Sum_probs=83.9
Q ss_pred hCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCC-CCH
Q 007782 324 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNL 402 (590)
Q Consensus 324 ~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~-~~L 402 (590)
-|..++ +++|+||=--|.+||+.|-.. + +|+++|.+ +|-+.+-.+.-.. ..+
T Consensus 38 e~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~ 90 (252)
T PF06690_consen 38 EGEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFR 90 (252)
T ss_pred cccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeecc
Confidence 345555 999999999999999888532 2 79999864 2222232111001 111
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCe
Q 007782 403 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGK 482 (590)
Q Consensus 403 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~ 482 (590)
.+ . .++||++|=++|-||+ +++.++.. + |=+|=.=||. ++-.=...++..+ .
T Consensus 91 ~~-~-~~~~DlIID~TGlGGv-~~~~Ls~~---~--p~v~IVEdP~--~~~sD~~I~~~~n------------------t 142 (252)
T PF06690_consen 91 NG-L-EGNPDLIIDTTGLGGV-DPDFLSKF---N--PKVFIVEDPK--GDGSDKTIYEINN------------------T 142 (252)
T ss_pred CC-C-CCCCCEEEECCCCCCC-CHHHHhcc---C--CCEEEEECCC--ccCcchhhhhccc------------------H
Confidence 11 1 2479999999999996 99988765 3 6677778888 4443333332211 1
Q ss_pred eeCcC--CCcccccchhh--hHHHHHhCCcccCHHHHHHHHHHH
Q 007782 483 VFVPG--QANNAYIFPGF--GLGLVISGAIRVHDDMLLAASEAL 522 (590)
Q Consensus 483 ~~~p~--Q~NN~yiFPGi--glG~l~s~a~~Itd~M~~aAA~aL 522 (590)
.-.+. -+.+..+.=-. |+.+=.||--.+|=+.+..|+..+
T Consensus 143 ~erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i 186 (252)
T PF06690_consen 143 EERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEI 186 (252)
T ss_pred HHHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHH
Confidence 11111 11222222223 455556777778877777766554
No 352
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=50.18 E-value=23 Score=38.48 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=37.9
Q ss_pred CHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHH
Q 007782 401 NLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTAE 456 (590)
Q Consensus 401 ~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEctpe 456 (590)
-+.|.+++ -|++|=+.-.|| +.|+++|++|. .-.+|.=|+--+ -++|+|-.
T Consensus 237 ~~a~~~~~--~DivITTAlIPGrpAP~Lvt~~mv~sMk---pGSViVDlAa~~GGNce~t~p 293 (356)
T COG3288 237 LVAEQAKE--VDIVITTALIPGRPAPKLVTAEMVASMK---PGSVIVDLAAETGGNCELTEP 293 (356)
T ss_pred HHHHHhcC--CCEEEEecccCCCCCchhhHHHHHHhcC---CCcEEEEehhhcCCCcccccC
Confidence 46677775 899997766554 79999999996 777898887654 45676643
No 353
>PRK06138 short chain dehydrogenase; Provisional
Probab=50.09 E-value=34 Score=33.23 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=22.6
Q ss_pred CCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.|++.+++|.|| |.-|..+|+.+ .+ .| -++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l----~~-~G-------~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLF----AR-EG-------ARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHH----HH-CC-------CeEEEecCC
Confidence 467889999998 34444444444 43 25 357777764
No 354
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.03 E-value=73 Score=34.72 Aligned_cols=113 Identities=25% Similarity=0.324 Sum_probs=61.6
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 409 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 409 (590)
.++|+|+|.|-.|..+|+.+.+ .|. +++..|.+- . .+.. ..+..+. ......+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~-~~~~~~~~~~-- 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHER-YLENAEEFPE-- 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhh-hcCCcHHHhc--
Confidence 4689999999999887777653 363 588888641 1 1211 1111110 0111222233
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeee
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 484 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 484 (590)
++|++|-..+.. .-.+.+.++..+. -||| |++. . +-++..+.+.+.|-.||| +|||-
T Consensus 59 ~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~~----~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDIQ----L-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHHH----H-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 378899887776 4566676666543 3432 3321 1 112222224567888997 77654
No 355
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=49.94 E-value=19 Score=39.26 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=33.9
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
.++++|=||++|||..|--++++|+.. |+ ++|-+||-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 467889999999999999999999864 76 78999987654
No 356
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=49.55 E-value=33 Score=37.68 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=57.6
Q ss_pred eEEEeCcChHHHH-HHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 332 RFLFLGAGEAGTG-IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 332 riv~~GAGsAg~G-IA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
+|.|+|.|-+|++ +|++|.+ .|. ++...|.+--- ..+.|......+- .. .+ .+.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~-~~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HS-AENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CC-HHHCC--C
Confidence 5899999999998 8988865 363 57778864210 1011211111110 01 11 12333 3
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc-CCcEEEecCC
Q 007782 411 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-KGRAIFASGS 472 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt-~G~aifAsGS 472 (590)
+|.+|=.++.+ --++++.++.. ...||+ +.+|. ++.+. +.+.|-.|||
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~~IaITGT 107 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKE--RGIPVI-------RRAEM----LAELMRFRHSIAVAGT 107 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHH--cCCceE-------eHHHH----HHHHHhcCcEEEEECC
Confidence 78888666665 35677777665 356665 33333 22322 3467777886
No 357
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=49.10 E-value=19 Score=40.39 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
-.|||+|+|.+|++||..+... |+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4699999999999999887653 75 478888763
No 358
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=49.02 E-value=20 Score=40.16 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
||+++|||..|+-+++.|+.. |+..-+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 652211 2789999987
No 359
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=49.01 E-value=25 Score=28.92 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.2
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 335 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 335 ~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
|+|||.+|+..|-.|.+. | .++.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999888653 4 48899988744
No 360
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=48.76 E-value=20 Score=37.88 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
|+|+|||.||+..|..+.. .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977653 253 688888764
No 361
>PRK09186 flagellin modification protein A; Provisional
Probab=48.59 E-value=40 Score=32.90 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=14.8
Q ss_pred CccceEEEeCcC-hHHHHHHHHHH
Q 007782 328 LAEHRFLFLGAG-EAGTGIAELIA 350 (590)
Q Consensus 328 l~d~riv~~GAG-sAg~GIA~li~ 350 (590)
+++.+++|.||+ ..|..+|+.++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~ 25 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAIL 25 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHH
Confidence 467899999984 34444555553
No 362
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=48.56 E-value=22 Score=43.40 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.5
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC----CcccC
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVS 379 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~----GLv~~ 379 (590)
-.+.||+|+|+|.||+..|..|... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 4589999999999999999988753 63 57788875 66543
No 363
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=48.51 E-value=79 Score=37.27 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=41.8
Q ss_pred HHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE
Q 007782 290 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 369 (590)
Q Consensus 290 ~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~ 369 (590)
.+++||..++=-|+-... .++.|-. ..++.||+++|.|.-|.-+.-.|+. .|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKFE--LSRNAKILAAGSGDFLTKLVRSLID-----SGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhcccEEEEecCchHHHHHHHHHh-----cCC------CcEE
Confidence 478999877655443321 1122222 2389999999999887777666654 486 7898
Q ss_pred EEcCCCc
Q 007782 370 LVDSKGL 376 (590)
Q Consensus 370 lvD~~GL 376 (590)
.+|.+=.
T Consensus 158 ~vd~D~v 164 (637)
T TIGR03693 158 AIVTDAE 164 (637)
T ss_pred EEecccc
Confidence 8877644
No 364
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=48.38 E-value=22 Score=38.67 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=27.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
.-.+||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 3469999999999999988865 25 5699999864
No 365
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=48.33 E-value=48 Score=32.55 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=24.2
Q ss_pred CCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 578899999997 5556556665543 363 57777764
No 366
>PRK06753 hypothetical protein; Provisional
Probab=48.24 E-value=22 Score=37.25 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.7
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007782 332 RFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~ 351 (590)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999888865
No 367
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=48.18 E-value=22 Score=38.94 Aligned_cols=31 Identities=26% Similarity=0.616 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.++|+|||.||+.+|..+.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988764 25 468888874
No 368
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=48.04 E-value=15 Score=40.05 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=26.1
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..+..||||+|+|.||+..|+.|. + . .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCC
Confidence 355679999999999998876652 1 1 2358888865
No 369
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=47.98 E-value=11 Score=45.35 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=70.0
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc--CC--CCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP--VNN 401 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~~--~~~ 401 (590)
++|.++++.++|||+.||-.-+-++.. |+.--+ ...|.+.|-+ +|.++ +|+. |--| |+. .. ...
T Consensus 426 eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~-~g~ItVTDmD-~IEkS---NLnR-QFLF-R~~dVgk~KSe~ 493 (1013)
T KOG2012|consen 426 EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGN-SGKITVTDMD-HIEKS---NLNR-QFLF-RPWDVGKPKSEV 493 (1013)
T ss_pred HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCC-CCceEEeccc-hhhhc---cccc-eeec-cccccCchHHHH
Confidence 678999999999999998766655442 553111 1357766665 33333 3543 1112 221 11 134
Q ss_pred HHHHhcccCCcEEE-------eccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEE
Q 007782 402 LLDAVKVIKPTILI-------GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 468 (590)
Q Consensus 402 L~e~V~~vkPtvLI-------G~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aif 468 (590)
-.+|+....|++.| |--+ -++|+.+--+.+- =++=||=|= ||-.|-|+||+|
T Consensus 494 AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~VanALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 494 AAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVANALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred HHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHHHhhcch---------hhhhhhhhhhhh
Confidence 67889999999987 3334 2578887766552 122344442 567777888877
No 370
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=47.88 E-value=21 Score=38.99 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
-.+||+|||+||+..|..+... | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 4699999999999999887653 5 4788999864
No 371
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=47.88 E-value=75 Score=31.89 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=51.2
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhc----hhhcc-ccCCCCCHHHH
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 405 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k----~~fA~-~~~~~~~L~e~ 405 (590)
||+|.|| |..|..+++.+.+ .| .+++++|+. .......+.... ..+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788876 7777777776654 24 346667642 111001111110 01111 22223457777
Q ss_pred hcccCCcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEe
Q 007782 406 VKVIKPTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILA 443 (590)
Q Consensus 406 V~~vkPtvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFa 443 (590)
++..++|++|=+.+..... +..++++|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8777899999655532111 2456677776655677773
No 372
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=47.75 E-value=22 Score=35.13 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
.|+|+|||.||+..|-.+.+ .|+ ++.++|++-.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999877753 364 5777887643
No 373
>PLN02676 polyamine oxidase
Probab=47.74 E-value=48 Score=37.23 Aligned_cols=24 Identities=21% Similarity=0.399 Sum_probs=20.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALE 352 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~ 352 (590)
...+++|+|||.+|+..|..|.+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc
Confidence 356799999999999999988753
No 374
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=47.68 E-value=21 Score=39.60 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~ 351 (590)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 469999999999999988764
No 375
>PRK07045 putative monooxygenase; Reviewed
Probab=47.68 E-value=23 Score=37.51 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~ 351 (590)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 376
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=47.49 E-value=30 Score=30.15 Aligned_cols=90 Identities=11% Similarity=0.162 Sum_probs=51.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 411 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 411 (590)
||.|+|+|..|......+... ..+. +=..++|++. +....+.+.|-- +...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 799999999977765555432 0111 2234566541 112222233322 245789999998889
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007782 412 TILIGSSGVGRTFTKEVIEAMASFNEKPLIL 442 (590)
Q Consensus 412 tvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 442 (590)
|+++ +++.. ....++++...+... +|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9888 45534 456666666554333 5554
No 377
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=47.34 E-value=69 Score=32.96 Aligned_cols=86 Identities=12% Similarity=0.244 Sum_probs=51.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 332 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 332 riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
||+|.|| |-.|--+++.|... | +++.+|+..-. +.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~-----g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPL-----G--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhcc-----C--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 99998888776531 3 35666653110 0011112235777888889
Q ss_pred CcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEecC
Q 007782 411 PTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 411 PtvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFaLS 445 (590)
||++|=+.+..+.- |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999766543221 334555555544 46887544
No 378
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=47.30 E-value=24 Score=36.89 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
...|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 35699999999999999777653 5 4688898764
No 379
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.16 E-value=71 Score=35.03 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=63.6
Q ss_pred Ccc-ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHh
Q 007782 328 LAE-HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 406 (590)
Q Consensus 328 l~d-~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 406 (590)
++. +||+|+|.|-.|++.+.+|... .| .-++...|.+=. ....+.|.. ...+...+ .+. +.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~~-~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WNL-EWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CCh-HHh
Confidence 444 6899999999999999998753 22 124677775421 000011211 11111110 011 233
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeee
Q 007782 407 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 484 (590)
Q Consensus 407 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 484 (590)
. ++|.+|=.++.+ --.+++.++.. ..-||+ +.+|. ++.+.+.+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~SpgI~-~~~p~~~~a~~--~gi~i~-------~~~el----~~~~~~~~~I~VTGT-------nGKTT 121 (438)
T PRK04663 67 L--EADLVVTNPGIA-LATPEIQQVLA--AGIPVV-------GDIEL----FAWAVDKPVIAITGS-------NGKST 121 (438)
T ss_pred c--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHhhcCCCEEEEeCC-------CCHHH
Confidence 3 378777555665 34677766654 346774 33333 333345678888997 77654
No 380
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=47.05 E-value=1.3e+02 Score=31.11 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=28.6
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007782 401 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 442 (590)
Q Consensus 401 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 442 (590)
++.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 265 ~~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 265 DVPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred CHHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 35566665 78899887654 58999999999 6789987
No 381
>PRK06182 short chain dehydrogenase; Validated
Probab=47.00 E-value=41 Score=33.57 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=38.3
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh---chhh-ccccCCCCCHH
Q 007782 329 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPW-AHEHEPVNNLL 403 (590)
Q Consensus 329 ~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~---k~~f-A~~~~~~~~L~ 403 (590)
+..+++|.|| |..|..+|+.+ .+ .| -++++++++- +.+... ...+ .-|..+..++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l----~~-~G-------~~V~~~~r~~-------~~l~~~~~~~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRL----AA-QG-------YTVYGAARRV-------DKMEDLASLGVHPLSLDVTDEASIK 62 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHH----HH-CC-------CEEEEEeCCH-------HHHHHHHhCCCeEEEeeCCCHHHHH
Confidence 4578999997 34444444444 33 35 3577776541 112111 1111 11222223555
Q ss_pred HHhccc-----CCcEEEeccCCC
Q 007782 404 DAVKVI-----KPTILIGSSGVG 421 (590)
Q Consensus 404 e~V~~v-----kPtvLIG~S~~~ 421 (590)
++++.+ ++|+||=..+..
T Consensus 63 ~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 666644 799999777654
No 382
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=46.97 E-value=32 Score=39.98 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=51.8
Q ss_pred CCCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc----------
Q 007782 326 GTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---------- 394 (590)
Q Consensus 326 ~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~---------- 394 (590)
.-+++++|++-|| ||.|-.++++|+.. + .++|.++|++=. ++..-.+++.+
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~ 307 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFY 307 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEE
Confidence 3477899999998 68899999988764 3 378999887521 12222222322
Q ss_pred --ccCCCCCHHHHhcccCCcEEEeccC
Q 007782 395 --EHEPVNNLLDAVKVIKPTILIGSSG 419 (590)
Q Consensus 395 --~~~~~~~L~e~V~~vkPtvLIG~S~ 419 (590)
+-.+...+.++++..|||+++=..+
T Consensus 308 igdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 308 IGDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred ecccccHHHHHHHHhcCCCceEEEhhh
Confidence 1122346999999999999997655
No 383
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=46.93 E-value=28 Score=38.53 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=36.8
Q ss_pred HHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc
Q 007782 293 AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 372 (590)
Q Consensus 293 ~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD 372 (590)
++|-...+.+.|=..||+ .++++++++|.||.+ ||...++..+.+ .|. ++.++|
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASg---GIG~aLA~~La~-~G~-------~Vi~l~ 209 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASG---TLGQALLKELHQ-QGA-------KVVALT 209 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCC---HHHHHHHHHHHH-CCC-------EEEEEe
Confidence 356677799999889988 256778999999833 333444444433 353 566676
Q ss_pred CC
Q 007782 373 SK 374 (590)
Q Consensus 373 ~~ 374 (590)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 54
No 384
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=46.72 E-value=33 Score=37.32 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=42.4
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 405 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 405 (590)
..|++.+|.|+|-|+-|.++|+.+... |+ ++++.|+.+ .+ .+..+. ..-...++.|+
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~~~A~~----~G~~v~sl~Ea 68 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----FEVAKA----DGFEVMSVSEA 68 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----hHHHHH----cCCEECCHHHH
Confidence 357899999999999999999998753 65 455555431 11 111111 11122479999
Q ss_pred hcccCCcEEE
Q 007782 406 VKVIKPTILI 415 (590)
Q Consensus 406 V~~vkPtvLI 415 (590)
++. .|+++
T Consensus 69 ak~--ADVV~ 76 (335)
T PRK13403 69 VRT--AQVVQ 76 (335)
T ss_pred Hhc--CCEEE
Confidence 987 78876
No 385
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=46.71 E-value=43 Score=36.49 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCccceEEEeCcChHHHHHHHHHHH
Q 007782 318 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 318 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~ 351 (590)
.-++......|++.|++|+|-+.-..++++.+.+
T Consensus 264 ~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 264 WRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH
Confidence 4445555566788899999999889999999876
No 386
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=46.55 E-value=1e+02 Score=32.23 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=50.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
+||.|+|.|+.+. +|+.+...|.+ .| ++.++++...... . .... + -+
T Consensus 48 ~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~~------~------------~~~~----~--~~ 94 (326)
T PRK10892 48 GKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAAH------G------------DLGM----V--TP 94 (326)
T ss_pred CeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhhc------c------------cccc----C--CC
Confidence 6999999997775 77777666654 34 3344332211000 0 0000 1 14
Q ss_pred CcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007782 411 PTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 448 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 448 (590)
-|++|++|..|. |+++++.+. +.+.-|+|-==+||.
T Consensus 95 ~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 95 QDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 689999999774 889988874 445557766555555
No 387
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=46.48 E-value=29 Score=36.97 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 456799999999999999888653 253 47889988643
No 388
>PRK13937 phosphoheptose isomerase; Provisional
Probab=46.46 E-value=74 Score=31.07 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=24.2
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 448 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 448 (590)
+-|++|++|..|. |+++++.+. +.+.-|+|.=-+||.
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4699999999774 999998874 333344444333333
No 389
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=46.46 E-value=22 Score=37.36 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=24.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 479999999999999977754 354 57777765
No 390
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=46.32 E-value=24 Score=36.85 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=26.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999988764 25 35888888654
No 391
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=46.25 E-value=1.7e+02 Score=29.39 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=29.1
Q ss_pred CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007782 400 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 442 (590)
Q Consensus 400 ~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 442 (590)
..+.+.++. .|++|..|... .|.-.++++|+ +..|+|.
T Consensus 254 ~~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 254 DDIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred ccHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 346677766 78999888764 47888999998 5778885
No 392
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=46.11 E-value=30 Score=35.91 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=31.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 376 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GL 376 (590)
+..||+++|+|.-|.-+++.|+.....-.++... .--+|.++|.+=+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~-~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP-GGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC-CCCEEEEECCCEE
Confidence 5689999999999999999998751100011100 0028999998733
No 393
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=46.01 E-value=75 Score=32.65 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.||.|+|.|..|..+|..+... | .+++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~-----g-------~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA-----G-------YSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4799999999999999998652 5 246777764
No 394
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=45.76 E-value=32 Score=36.37 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=28.0
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
-..++|+|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 345899999999999999888764 25 468888875
No 395
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.70 E-value=27 Score=38.43 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=27.3
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
-...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 345899999999999998887753 25 368888875
No 396
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=45.55 E-value=43 Score=34.73 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 373 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~ 373 (590)
.||.|+|+|..|-.+|.-|+.. |.- ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-----g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-----NIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-----CCC---CCceEEEECC
Confidence 3799999999999999888642 531 2346888876
No 397
>PRK07589 ornithine cyclodeaminase; Validated
Probab=45.53 E-value=2.1e+02 Score=31.13 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=65.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc---CCCCCHHHHh
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAV 406 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~---~~~~~L~e~V 406 (590)
-.++.|+|+|.-+..-++.++.. ..+ ++|+++|+. .. +.+.+...+.+.. ....+++|++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~v----r~i------~~V~v~~r~----~~---~a~~~~~~~~~~~~~v~~~~~~~~av 191 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKAL----LGI------EEIRLYDID----PA---ATAKLARNLAGPGLRIVACRSVAEAV 191 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHh----CCc------eEEEEEeCC----HH---HHHHHHHHHHhcCCcEEEeCCHHHHH
Confidence 47899999999887777666653 133 778887663 11 1233333332211 1236899999
Q ss_pred cccCCcEEEeccCC-C--CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHHH
Q 007782 407 KVIKPTILIGSSGV-G--RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 458 (590)
Q Consensus 407 ~~vkPtvLIG~S~~-~--g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEctpedA 458 (590)
+. .||++-++.. . .+|..++++. .--|-++ |+--.+-|+.++-.
T Consensus 192 ~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 192 EG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred hc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHHH
Confidence 87 9999987642 2 4688888852 2235554 45446789998753
No 398
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=45.46 E-value=1.1e+02 Score=31.36 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=53.0
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhccc
Q 007782 331 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 409 (590)
Q Consensus 331 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 409 (590)
-||.++|+ |..|-.+++.+... .++ +=..++|++. ++.... ..+ +.....++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 38999999 99998888776432 232 3355677652 111101 111 1122367888886
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 443 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 443 (590)
+||++|=+|... ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888543 346666665544 5788855
No 399
>PRK14852 hypothetical protein; Provisional
Probab=45.36 E-value=21 Score=43.90 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=33.3
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+|+..||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 478999999999999998888888764 86 799999987
No 400
>PLN02463 lycopene beta cyclase
Probab=45.09 E-value=24 Score=39.32 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=24.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
-.|+|+|||.||..+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999987754 364 57777764
No 401
>PRK08219 short chain dehydrogenase; Provisional
Probab=45.08 E-value=83 Score=29.94 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=38.5
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhh-----cc-ccCCCCCHH
Q 007782 331 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-----AH-EHEPVNNLL 403 (590)
Q Consensus 331 ~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f-----A~-~~~~~~~L~ 403 (590)
.+++|.|+ |..|..+++.+++. .+++++|++. +.++...... -+ +-.+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 57999997 55555555555421 3577777651 1121111111 11 112223566
Q ss_pred HHhccc-CCcEEEeccCCC
Q 007782 404 DAVKVI-KPTILIGSSGVG 421 (590)
Q Consensus 404 e~V~~v-kPtvLIG~S~~~ 421 (590)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 667654 689999887764
No 402
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=45.07 E-value=36 Score=36.00 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=28.4
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc--CCCCcEEEecCCCCC
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMAS--FNEKPLILALSNPTS 449 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma~--~~erPIIFaLSNPt~ 449 (590)
+-|++||+|..|. |++++..+.. ...-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5699999999875 9999998853 334477776677763
No 403
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=45.03 E-value=14 Score=40.28 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=30.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh---cCCChhhhcC----cEEEEcCCCcc
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQ---TKAPVEETRK----KICLVDSKGLI 377 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~---~G~s~eeA~~----~i~lvD~~GLv 377 (590)
++|+|+|||-||+..|..|.+..-.. .-++.=||+. +++-....|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 47999999999999999997642100 1256666665 35554444543
No 404
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=45.00 E-value=29 Score=36.49 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=26.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..+|+|+|||.||...|-+|...- + .|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~-~-~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS-H-GGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc-c-CCC-------EEEEEeCC
Confidence 457999999999999988886520 1 154 57777773
No 405
>PRK07334 threonine dehydratase; Provisional
Probab=44.84 E-value=4.1e+02 Score=29.12 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcC--CCchhHHHHhhhh-cccccchhhhcccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCc
Q 007782 90 LQEKKLMNSIRQY--EVPLQKYVAMMEL-ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEK 166 (590)
Q Consensus 90 ~Q~~r~~~~~~~~--~~~l~Ky~~L~~L-~~Ne~LFy~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~ 166 (590)
+|+..+.+.+... .|||-+.--|... ..| ||.|+ .+.+|-|-| |||
T Consensus 8 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~--l~~K~--------------------------E~~nptGS~---KdR 56 (403)
T PRK07334 8 ADIRAAAARLAGQVLRTPCVHSRTLSQITGAE--VWLKF--------------------------ENLQFTASF---KER 56 (403)
T ss_pred HHHHHHHHHHhCCCCCCCccchHHHHHhhCCe--EEEEe--------------------------ccCCCCCCc---hHH
Q ss_pred chHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCcccchhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCccccc
Q 007782 167 GKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIG 246 (590)
Q Consensus 167 g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG 246 (590)
+-...+.+--.....+-+|..-+ |+.|. -++.|.+..|+. |. |+++-++
T Consensus 57 ~a~~~i~~~~~~~~~~~vv~aSs------GN~g~--------alA~~a~~~G~~---~~-iv~p~~~------------- 105 (403)
T PRK07334 57 GALNKLLLLTEEERARGVIAMSA------GNHAQ--------GVAYHAQRLGIP---AT-IVMPRFT------------- 105 (403)
T ss_pred HHHHHHHhcCHHHhCCcEEEECC------cHHHH--------HHHHHHHHcCCC---EE-EEECCCC-------------
Q ss_pred ccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCC
Q 007782 247 LRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGG 326 (590)
Q Consensus 247 ~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~ 326 (590)
.+--...-+.||.++.+. +-....|.+..+++..+--.|--+.-+.-....+----|..+...
T Consensus 106 ---------------~~~k~~~~~~~GA~v~~~--~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 168 (403)
T PRK07334 106 ---------------PTVKVERTRGFGAEVVLH--GETLDEARAHARELAEEEGLTFVHPYDDPAVIAGQGTVALEMLED 168 (403)
T ss_pred ---------------CHHHHHHHHHcCCEEEEE--CcCHHHHHHHHHHHHHhcCCEecCCCCCHHHHHhHHHHHHHHHhc
Q ss_pred CCccceEEEeCcChHH--HHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 327 TLAEHRFLFLGAGEAG--TGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg--~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
+.+-..||++.|+.| .||+.-+...--. -+||.|+..|
T Consensus 169 -~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~----------~~vi~ve~~~ 208 (403)
T PRK07334 169 -APDLDTLVVPIGGGGLISGMATAAKALKPD----------IEIIGVQTEL 208 (403)
T ss_pred -CCCCCEEEEecCHHHHHHHHHHHHHHhCCC----------CEEEEEEECC
No 406
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=44.76 E-value=24 Score=38.56 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~ 351 (590)
-.|+|+|||.||...|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 579999999999999988764
No 407
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=44.72 E-value=27 Score=37.34 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=25.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
...|+|+|||.||+-.|-.|... |+ ++.++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-----G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-----GL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEccC
Confidence 35799999999999988887653 74 56677776
No 408
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=44.71 E-value=1.2e+02 Score=31.78 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=46.8
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcccc-------CCCC
Q 007782 329 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-------EPVN 400 (590)
Q Consensus 329 ~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-------~~~~ 400 (590)
...+||++.. ++.++|-+ +.+|.. -|+ +++++|+.+ . .+++.-..+|... .-..
T Consensus 3 ~~i~iVLVep~~~gNIG~v---ARaMKN-fGl------~eL~LV~Pr-------~-~~~eeA~a~A~gA~dile~A~i~~ 64 (242)
T COG0565 3 ENIRIVLVEPSHPGNIGSV---ARAMKN-FGL------SELRLVNPR-------A-GLDEEARALAAGARDILENAKIVD 64 (242)
T ss_pred CccEEEEEcCCCCccHHHH---HHHHHh-CCc------ceEEEECCC-------C-CCCHHHHHHhccchhhhccCeeec
Confidence 3457777754 55666653 344443 488 568988775 2 2444444444321 1236
Q ss_pred CHHHHhcccCCcEEEeccCCCC
Q 007782 401 NLLDAVKVIKPTILIGSSGVGR 422 (590)
Q Consensus 401 ~L~e~V~~vkPtvLIG~S~~~g 422 (590)
||.|+|.. .+.+||+|+...
T Consensus 65 tL~eAl~d--~~~v~aTtar~r 84 (242)
T COG0565 65 TLEEALAD--CDLVVATTARSR 84 (242)
T ss_pred CHHHHhcC--CCEEEEeccccC
Confidence 99999997 999999997654
No 409
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=44.65 E-value=61 Score=39.12 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=65.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc--cCCCCCHH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLL 403 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~---~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~--~~~~~~L~ 403 (590)
+..+|.++|-|..|.|++++|.+. +.++.|+.. +=.-++|++|.+.+.+.-++......|... ..+...+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHH
Confidence 346899999999999999999774 223334421 113457998888776532222333333321 12234567
Q ss_pred HHhcccCCc--EEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007782 404 DAVKVIKPT--ILIGSSGVGRTFTKEVIEAMASFNEKPLIL 442 (590)
Q Consensus 404 e~V~~vkPt--vLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 442 (590)
|.+....++ |+|=+++.. -....+.+++. +...+|-
T Consensus 533 e~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVt 570 (810)
T PRK09466 533 LWLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVIS 570 (810)
T ss_pred HHHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEc
Confidence 777766665 888888633 34456667776 4566665
No 410
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=44.43 E-value=90 Score=30.86 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=40.3
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchh-hccccCCCCCHHHH
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-WAHEHEPVNNLLDA 405 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~-fA~~~~~~~~L~e~ 405 (590)
.|++.++||.|++. ||...++..+.+ .| -+++++|++.- + +...+.. +.-|..+..++.++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G-------~~v~~~~~~~~----~---~~~~~~~~~~~D~~~~~~~~~~ 67 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NG-------ANVVNADIHGG----D---GQHENYQFVPTDVSSAEEVNHT 67 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CC-------CEEEEEeCCcc----c---cccCceEEEEccCCCHHHHHHH
Confidence 47788999999753 555555555554 36 35777776421 1 1111111 11121222345555
Q ss_pred hccc-----CCcEEEeccCC
Q 007782 406 VKVI-----KPTILIGSSGV 420 (590)
Q Consensus 406 V~~v-----kPtvLIG~S~~ 420 (590)
++.+ ++|+||=..+.
T Consensus 68 ~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 5543 67999976654
No 411
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=44.38 E-value=33 Score=35.53 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=25.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 346799999999999999888764 64 678888763
No 412
>PRK12831 putative oxidoreductase; Provisional
Probab=44.15 E-value=28 Score=38.66 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=27.9
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
-...+|+|+|+|.||+..|..+... | .++.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 3568999999999999999888753 5 357788864
No 413
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=44.10 E-value=27 Score=39.69 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=26.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+-.|+|+|+|..|++||..+... |+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35699999999999999988753 64 57888875
No 414
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=44.04 E-value=23 Score=37.61 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
...|+|+|||.||+..|-.|.+ .|+ ++.++|++-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999977653 364 477888763
No 415
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=44.04 E-value=27 Score=35.88 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=28.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 377 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv 377 (590)
.+-.++|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999887754 25 468888887543
No 416
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=44.01 E-value=28 Score=40.35 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 589999999999999998865 263 689999874
No 417
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=44.00 E-value=23 Score=37.18 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.8
Q ss_pred EEEeCcChHHHHHHHHHHHH
Q 007782 333 FLFLGAGEAGTGIAELIALE 352 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~ 352 (590)
|+|+|||.||+..|-.|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 89999999999999888753
No 418
>PLN02427 UDP-apiose/xylose synthase
Probab=43.99 E-value=71 Score=33.96 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=50.4
Q ss_pred HHHhCCCCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh-------chhh
Q 007782 321 LKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-------KKPW 392 (590)
Q Consensus 321 ~r~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~-------k~~f 392 (590)
+.+.|++++-.||+|.|| |-.|.-+++.|++. .| .+++.+|+.. .+...+.+. +.+|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 456899999999999996 89998888887652 12 3677777531 100111100 1122
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCC
Q 007782 393 AH-EHEPVNNLLDAVKVIKPTILIGSSGV 420 (590)
Q Consensus 393 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~ 420 (590)
.+ +......+.+++++ +|++|=+.+.
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~ 96 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAI 96 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEcccc
Confidence 21 11222457778875 8999977764
No 419
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=43.97 E-value=1.1e+02 Score=30.27 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCC
Q 007782 410 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNP 447 (590)
Q Consensus 410 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNP 447 (590)
+-|++|++|..| -|+++++.+. +...-|+|-=-+|+
T Consensus 111 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 111 EGDVLLGISTSG--NSGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999977 4999998874 33344555444443
No 420
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.97 E-value=25 Score=39.28 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=27.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
..|||+|+|.+|+++|..+... |+ ++.+++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECCC
Confidence 5799999999999999998653 64 588888763
No 421
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=43.97 E-value=32 Score=40.59 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+-.+.+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~-----G-------~~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKR-----G-------YDVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 34678999999999999999988653 5 368888874
No 422
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=43.84 E-value=89 Score=30.65 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=25.6
Q ss_pred CCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 325 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 325 g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..++++.+++|.||++ ||...++..+.+ .|. +++++|++
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 3568899999999732 344445555544 363 68888875
No 423
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=43.77 E-value=27 Score=43.09 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.3
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
-+.+||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 4578999999999999999998653 63 57788865
No 424
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=43.76 E-value=27 Score=38.27 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=24.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+||+|||+||+..|..+.+. | .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 79999999999998887652 5 478899975
No 425
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=43.63 E-value=30 Score=36.79 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=24.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 579999999999999977754 365 56677754
No 426
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=43.56 E-value=42 Score=35.87 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=51.0
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcC
Q 007782 304 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 383 (590)
Q Consensus 304 DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~ 383 (590)
|+..+.-+=-+|.-+.+.........+.+++|+|+|+.|+..+.+.. ..|. ++|+++|.. .+|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~-----~~Ga------~~Viv~d~~----~~R-- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAK-----LLGA------SVVIVVDRS----PER-- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHH-----HcCC------ceEEEeCCC----HHH--
Confidence 33444433344444334222222223339999999999977633222 2364 789988764 332
Q ss_pred CCchhchhhccc--cCCCC-CHHHHh----cccCCcEEEeccCC
Q 007782 384 SLQHFKKPWAHE--HEPVN-NLLDAV----KVIKPTILIGSSGV 420 (590)
Q Consensus 384 ~l~~~k~~fA~~--~~~~~-~L~e~V----~~vkPtvLIG~S~~ 420 (590)
|+..++.++-+ ..... ...+.+ ..-..|+.|=+||.
T Consensus 206 -l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 206 -LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred -HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 44333333322 11111 222223 22368999999983
No 427
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=43.39 E-value=24 Score=38.97 Aligned_cols=103 Identities=13% Similarity=0.139 Sum_probs=57.2
Q ss_pred HHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc----
Q 007782 319 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---- 394 (590)
Q Consensus 319 ~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~---- 394 (590)
.++.-....|+++|+.|+|-..-.+++++.|.+ .|+... . +++........+.-+.+..
T Consensus 292 ~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v~------~------~~~~~~~~~~~~~~~~~l~~~~~ 354 (435)
T cd01974 292 DAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEPV------H------VLTGNGGKRFEKEMQALLDASPY 354 (435)
T ss_pred HHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEEE------E------EEeCCCCHHHHHHHHHHHhhcCC
Confidence 333344456788999999988899999999874 377321 1 1121111101110111111
Q ss_pred -------ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007782 395 -------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 448 (590)
Q Consensus 395 -------~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 448 (590)
...+...+++.++..+||++||.|. . +.+|+...-|.| ..+.|.
T Consensus 355 ~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~-----~----~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 355 GAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTY-----G----KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCcEEEECCCHHHHHHHHhhcCCCEEEECcc-----H----HHHHHHhCCCEE-EeeCCc
Confidence 1122245788889999999999774 1 233333356653 556665
No 428
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=43.37 E-value=1.6e+02 Score=28.07 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=60.5
Q ss_pred eeecCCCCCCCcccchhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHH
Q 007782 191 RILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQ 270 (590)
Q Consensus 191 rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~ 270 (590)
||||+ |.|....|..+-.. ..--|-.+|.|+=.. ..+....+....+.+++ ..+..
T Consensus 1 rILGI-DPGl~~~G~av~~~-----------~~~~~~~~~~g~i~t-----------~~~~~~~~rl~~I~~~l-~~~i~ 56 (154)
T cd00529 1 RILGI-DPGSRNTGYGVIEQ-----------EGRKLIYLASGVIRT-----------SSDAPLPSRLKTIYDGL-NEVID 56 (154)
T ss_pred CEEEE-ccCcCceEEEEEEe-----------eCCeEEEEEeeEEEC-----------CCCCCHHHHHHHHHHHH-HHHHH
Confidence 56776 67776555544221 112356677775321 12222344555544444 44446
Q ss_pred hcCCCeeeeeec-CCCchHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCc-----cceEEEeCcChHHH
Q 007782 271 NYGEKVLIQFED-FANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLA-----EHRFLFLGAGEAGT 343 (590)
Q Consensus 271 ~fGp~~lIqfED-f~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~-----d~riv~~GAGsAg~ 343 (590)
.|-|+ .+-.|+ |-+.|.-..+.- .-+-..++.++...|.++. ..|-.+.|.|.|.-
T Consensus 57 ~~~Pd-~vaiE~~~~~~n~~s~~~l----------------~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~K 118 (154)
T cd00529 57 QFQPD-VVAIERVFFAKNPDSALKL----------------GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADK 118 (154)
T ss_pred HhCCC-EEEEEEhhcccChHHHHHH----------------HHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCH
Confidence 78786 677888 334442211110 1134556667777777754 46788889998875
No 429
>PRK06841 short chain dehydrogenase; Provisional
Probab=43.34 E-value=39 Score=33.03 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=23.6
Q ss_pred CCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
++++.+++|.|| |..|..+|+.++ + .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~----~-~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFA----A-KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 477889999998 545555555553 3 363 57777764
No 430
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=43.24 E-value=21 Score=32.63 Aligned_cols=32 Identities=19% Similarity=0.489 Sum_probs=25.0
Q ss_pred CChhhhHHHHHHHHHHHHH---hcCCCeeeeeecC
Q 007782 252 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDF 283 (590)
Q Consensus 252 ~~g~~Y~~~idefv~av~~---~fGp~~lIqfEDf 283 (590)
.+.++||.|+|+|+..|.+ .||....-+||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEE
Confidence 4678999999999998887 4666656666665
No 431
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=43.24 E-value=31 Score=40.17 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=26.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
...||+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 457999999999999999888642 53 57777764
No 432
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=43.19 E-value=24 Score=34.75 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+++.+++|.|+ |.-|..||+.++ + .|. ++.++|++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~----~-~G~-------~v~~~~r~ 39 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYL----A-EGA-------RVVIADIK 39 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH----H-cCC-------EEEEEcCC
Confidence 467889999997 444555555544 3 363 57777764
No 433
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=43.09 E-value=67 Score=31.02 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=24.5
Q ss_pred CCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+.+.+++|.|| |..|..+++.+++ .| -++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~-----~g-------~~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAA-----DG-------AEVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 356789999996 5666666666653 25 257877765
No 434
>PRK08244 hypothetical protein; Provisional
Probab=43.07 E-value=28 Score=38.45 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.5
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~ 351 (590)
..|+|+|||.+|+..|-.|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 569999999999999988865
No 435
>PRK07588 hypothetical protein; Provisional
Probab=42.97 E-value=29 Score=36.77 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.7
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007782 332 RFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~ 351 (590)
+|+|+|||.||+..|-.|.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 79999999999999988764
No 436
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=42.94 E-value=29 Score=36.90 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+|+|+|||-+|+.+|..+... | .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 699999999999999887642 5 368888875
No 437
>PRK10262 thioredoxin reductase; Provisional
Probab=42.84 E-value=25 Score=36.41 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.6
Q ss_pred CccceEEEeCcChHHHHHHHHHHH
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~ 351 (590)
-+..+|||+|||.||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999988765
No 438
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=42.75 E-value=30 Score=38.70 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.2
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 6899999999999999999888653 26788776654
No 439
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=42.68 E-value=28 Score=38.11 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=25.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 377 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv 377 (590)
+++|+|||-+|.=||+.+.+ .| +++.+||++--|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccccC
Confidence 68999999999999994332 35 788888876443
No 440
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=42.67 E-value=36 Score=36.70 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 377 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv 377 (590)
|+|+|||.||+.+|..|.+. ..| .++.++|+.-.+
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~~ 36 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRTI 36 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCCC
Confidence 79999999999999777643 124 357777775433
No 441
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=42.67 E-value=60 Score=38.03 Aligned_cols=93 Identities=14% Similarity=0.218 Sum_probs=51.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
.||.|+|+|..|..+|..+... |. ..+++.+|++ .++ +...++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999988653 53 2458888874 111 111110 10000122356666654
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecC
Q 007782 411 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALS 445 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLS 445 (590)
+|++| ++..+ ...+++++.|+.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66666 43333 35677777776532 333444344
No 442
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=42.58 E-value=29 Score=37.80 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 373 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~ 373 (590)
.+||+|||.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999888652 5 47889998
No 443
>PRK06185 hypothetical protein; Provisional
Probab=42.51 E-value=29 Score=36.84 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=25.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
+..|+|+|||.+|+..|-.|.. .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999999877654 365 467777653
No 444
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=42.42 E-value=31 Score=38.05 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 35799999999999998887653 5 578999975
No 445
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=42.42 E-value=27 Score=36.92 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=25.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+..|+|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999877653 364 57788875
No 446
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=42.38 E-value=94 Score=32.24 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=47.4
Q ss_pred CCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc-cCCCcCCCch------hchhhcc-ccC
Q 007782 327 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI-VSSRKDSLQH------FKKPWAH-EHE 397 (590)
Q Consensus 327 ~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv-~~~R~~~l~~------~k~~fA~-~~~ 397 (590)
+++..+++|.|| |-.|..+++.|+.. |. +++++|+..-- ...+...+.. .+..|.. +..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~-----G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSK-----GY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 567789999997 78888888877652 53 57777654210 0000000100 0111111 222
Q ss_pred CCCCHHHHhcccCCcEEEeccCC
Q 007782 398 PVNNLLDAVKVIKPTILIGSSGV 420 (590)
Q Consensus 398 ~~~~L~e~V~~vkPtvLIG~S~~ 420 (590)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467788888899999988775
No 447
>PLN02568 polyamine oxidase
Probab=42.37 E-value=16 Score=41.62 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHH
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALE 352 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~ 352 (590)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 356899999999999999999764
No 448
>PRK07478 short chain dehydrogenase; Provisional
Probab=42.36 E-value=64 Score=31.67 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=22.7
Q ss_pred CCccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGs-Ag~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+++.+++|.||+. .|..+|+.+ .+ .|. +++++++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l----~~-~G~-------~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLF----AR-EGA-------KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHH----HH-CCC-------EEEEEeCC
Confidence 46778999999853 344444444 43 363 57877764
No 449
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=42.36 E-value=59 Score=33.91 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=56.0
Q ss_pred CccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc-ccCCCCCHHHH
Q 007782 328 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 405 (590)
Q Consensus 328 l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-~~~~~~~L~e~ 405 (590)
+++.+++|.|| |..|..+++.|++. |- -.+++++|++..-...-...+...+..|.. +..+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45778999997 77777777776542 31 136888876422100000001000111111 22222457777
Q ss_pred hcccCCcEEEeccCCCCC----C------------CHHHHHHHHcCCCCcEEEecC
Q 007782 406 VKVIKPTILIGSSGVGRT----F------------TKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 406 V~~vkPtvLIG~S~~~g~----F------------t~evv~~Ma~~~erPIIFaLS 445 (590)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 775 8999977664321 1 235666666655567888544
No 450
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=42.35 E-value=28 Score=37.91 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
-.+||+|+|.||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999888653 5 468899975
No 451
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=42.05 E-value=27 Score=36.30 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=23.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
|+|+|||.||+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 8999999999999977764 364 466666663
No 452
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=42.04 E-value=66 Score=36.67 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=62.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc-ccC---CCCCHHHHh
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHE---PVNNLLDAV 406 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-~~~---~~~~L~e~V 406 (590)
.+|-|+|-|..|.++|.-|+.. |. ++.+.|+. .++ .+++...++. ... ...++.|++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v 67 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFV 67 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHH
Confidence 3699999999999999999753 64 56677763 222 2233222222 111 346899999
Q ss_pred ccc-CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 007782 407 KVI-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 448 (590)
Q Consensus 407 ~~v-kPtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 448 (590)
+.+ +|+++| ++=..+.-.++|+..+.. ..+.-||.=+||=.
T Consensus 68 ~~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 68 LSIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred hcCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 754 588888 443344556666654443 34677999999854
No 453
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=42.02 E-value=36 Score=31.06 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=25.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
|+|+|+|+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999998888653 4 4588888765
No 454
>PRK08013 oxidoreductase; Provisional
Probab=41.97 E-value=31 Score=37.01 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=24.6
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+-.|+|+|||.||+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3579999999999999877654 365 45666654
No 455
>PRK14694 putative mercuric reductase; Provisional
Probab=41.95 E-value=34 Score=37.77 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+-.++|+|||+||+..|..+.+. | .++-++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888763 5 478889875
No 456
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=41.92 E-value=31 Score=37.94 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=26.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
|++|+|+|+||+..|..+.+. | +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----G-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEECC
Confidence 799999999999998887652 5 479999975
No 457
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=41.84 E-value=25 Score=37.51 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=24.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 369999999999999988754 364 56677765
No 458
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=41.80 E-value=27 Score=39.90 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=47.4
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccC--C-CCCH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--P-VNNL 402 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~--~-~~~L 402 (590)
+.+++-|||++|||-.|+-.-+.|+. .|+ +.|.++|.+-+=.+ +|+. |--|-+++- + ...-
T Consensus 8 eai~~~riLvVGaGGIGCELLKnLal-----~gf------~~IhiIDlDTIDlS----NLNR-QFLFrkkhVgqsKA~vA 71 (603)
T KOG2013|consen 8 EAIKSGRILVVGAGGIGCELLKNLAL-----TGF------EEIHIIDLDTIDLS----NLNR-QFLFRKKHVGQSKATVA 71 (603)
T ss_pred HHhccCeEEEEecCcccHHHHHHHHH-----hcC------CeeEEEeccceecc----chhh-hheeehhhcCchHHHHH
Confidence 34578999999999888776666654 376 78999999843221 2442 222333321 1 1346
Q ss_pred HHHhcccCCcEEE
Q 007782 403 LDAVKVIKPTILI 415 (590)
Q Consensus 403 ~e~V~~vkPtvLI 415 (590)
.++|++..|.+=|
T Consensus 72 ~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 72 AKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHHhCCCCce
Confidence 6888888887765
No 459
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=41.79 E-value=63 Score=33.33 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=49.6
Q ss_pred cceEEEeCcChHHHHHHHH-HHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcc
Q 007782 330 EHRFLFLGAGEAGTGIAEL-IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 408 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~l-i~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 408 (590)
--||.|+|+| +++.. .+.++.+..+. ..-+.++|++ . +....+.+.|--. .-..++.+.++.
T Consensus 3 ~irvgiiG~G----~~~~~~~~~~~~~~~~~-----~~~vav~d~~----~---~~a~~~a~~~~~~-~~~~~~~~ll~~ 65 (342)
T COG0673 3 MIRVGIIGAG----GIAGKAHLPALAALGGG-----LELVAVVDRD----P---ERAEAFAEEFGIA-KAYTDLEELLAD 65 (342)
T ss_pred eeEEEEEccc----HHHHHHhHHHHHhCCCc-----eEEEEEecCC----H---HHHHHHHHHcCCC-cccCCHHHHhcC
Confidence 4589999998 44433 23333221110 1234444543 1 1133333333222 235789999999
Q ss_pred cCCcEEEeccCCCCCCCHHHHHH-HHc----CCCCcEEE
Q 007782 409 IKPTILIGSSGVGRTFTKEVIEA-MAS----FNEKPLIL 442 (590)
Q Consensus 409 vkPtvLIG~S~~~g~Ft~evv~~-Ma~----~~erPIIF 442 (590)
-++|+++ ..+.. .+..|++.+ +.+ .||+|+-.
T Consensus 66 ~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~ 102 (342)
T COG0673 66 PDIDAVY-IATPN-ALHAELALAALEAGKHVLCEKPLAL 102 (342)
T ss_pred CCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEcCCCCC
Confidence 7788877 44433 566666644 332 56777644
No 460
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=41.77 E-value=1.5e+02 Score=33.59 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=29.2
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+.++||+++|-|-.|+++|+.|.+. | -++++.|.+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~-----G-------~~v~v~D~~ 39 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKL-----G-------AEVTVSDDR 39 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 34589999999999999999999763 6 367788765
No 461
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=41.75 E-value=60 Score=35.28 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=64.6
Q ss_pred eEEEe-CcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhcc-ccCCCCCHHHHhccc
Q 007782 332 RFLFL-GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVI 409 (590)
Q Consensus 332 riv~~-GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~~v 409 (590)
+||+. |||-.|--.+.+|+++ | .++.++|. |-+..+ +.+...+-+|-. +..+..-|.++++..
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~-----G-------~~vvV~DN--L~~g~~-~~v~~~~~~f~~gDi~D~~~L~~vf~~~ 66 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKT-----G-------HEVVVLDN--LSNGHK-IALLKLQFKFYEGDLLDRALLTAVFEEN 66 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHC-----C-------CeEEEEec--CCCCCH-HHhhhccCceEEeccccHHHHHHHHHhc
Confidence 45555 6788888888888763 5 57888887 333333 334433223332 222224588999999
Q ss_pred CCcEEEecc---CCC------------CCC-CHHHHHHHHcCCCCcEEEecC
Q 007782 410 KPTILIGSS---GVG------------RTF-TKEVIEAMASFNEKPLILALS 445 (590)
Q Consensus 410 kPtvLIG~S---~~~------------g~F-t~evv~~Ma~~~erPIIFaLS 445 (590)
||+++|=.. .+| ++. |-..+++|.+++-+.|||.=|
T Consensus 67 ~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSSt 118 (329)
T COG1087 67 KIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSST 118 (329)
T ss_pred CCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecc
Confidence 999999443 333 111 567899999999999999654
No 462
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=41.72 E-value=1.2e+02 Score=32.81 Aligned_cols=109 Identities=12% Similarity=0.158 Sum_probs=58.5
Q ss_pred HhCCCCccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC--cCCCch-h-chhhcc-cc
Q 007782 323 LIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--KDSLQH-F-KKPWAH-EH 396 (590)
Q Consensus 323 ~~g~~l~d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R--~~~l~~-~-k~~fA~-~~ 396 (590)
..++..+++||+|.|| |-.|..+++.|++ .| -+++.++++.--.... ...+.. . ...+.. +.
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G-------~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 120 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVR-----RG-------YNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDV 120 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHH-----CC-------CEEEEEEechhhccccchhhHHhhhcCCceEEEeeC
Confidence 3456678899999998 8888888888764 25 2577776642100000 000000 0 011111 22
Q ss_pred CCCCCHHHHhccc--CCcEEEeccCCC--C---CC------CHHHHHHHHcCCCCcEEEe
Q 007782 397 EPVNNLLDAVKVI--KPTILIGSSGVG--R---TF------TKEVIEAMASFNEKPLILA 443 (590)
Q Consensus 397 ~~~~~L~e~V~~v--kPtvLIG~S~~~--g---~F------t~evv~~Ma~~~erPIIFa 443 (590)
.+..++.++++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+.
T Consensus 121 ~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 121 TDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2234677778765 699998544321 1 11 3456777765554556663
No 463
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=41.71 E-value=27 Score=40.62 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=27.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
++..|+|+|||.||+..|-.|... .|+ ++.++|++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 457899999999999998887652 265 46778876
No 464
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=41.47 E-value=33 Score=36.56 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=18.8
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007782 330 EHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~ 351 (590)
..+|+|+|||.||+-.|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 3679999999999999887754
No 465
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=41.47 E-value=84 Score=30.61 Aligned_cols=144 Identities=16% Similarity=0.213 Sum_probs=87.7
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC--ceeecCCCCCCC--cccchhhhHHHHHHhcCCCCCceeeE
Q 007782 152 IFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPI 227 (590)
Q Consensus 152 i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LYta~gGI~P~~~LPI 227 (590)
+-+++.|+-++.-|.....+.++.+-..+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 46779999999999988889998888889988887555 111122223333 36667777777666655 445
Q ss_pred EeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe-eee---eecCCCchHHHHHHHHcCCC---c
Q 007782 228 TVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQ---FEDFANHNAFELLAKYGTTH---L 300 (590)
Q Consensus 228 ~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~-lIq---fEDf~~~~Af~lL~ryr~~~---~ 300 (590)
++=.|..+ .....+.++-|.+++++ ++ ++ ++. +.++....+.+..+++-..+ .
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 185 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YP-GVEIVDEYEYTDWDPEDARQAIENLLQANPVDA 185 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CT-TEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEE
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cc-eeeeeeeeeccCCCHHHHHHHHHHhhhcCCceE
Confidence 54444321 12233457788888888 64 33 222 23677777776555553222 3
Q ss_pred eeccCCCchHHHHHHHHHHHHHHhCC
Q 007782 301 VFNDDIQGTASVVLAGVVAALKLIGG 326 (590)
Q Consensus 301 ~FNDDiQGTaaV~LAgll~A~r~~g~ 326 (590)
+|. +....+-|++.|++-.|+
T Consensus 186 i~~-----~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 186 IIA-----CNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEE-----SSHHHHHHHHHHHHHTTC
T ss_pred EEe-----CCChHHHHHHHHHHHcCC
Confidence 332 223344477888888888
No 466
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=41.44 E-value=38 Score=35.76 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=65.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 410 (590)
+||.++|.|..|--|++.|... +. +..+-.++.|+.. + ..+.++...+.+.+|.+.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~-------~~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----D-------LPPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----H-------HHHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999987542 11 0123344555431 1 11223332344578888643 37
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE---ecCCCCCCCCCCHHHHhcccCCcEEEecC
Q 007782 411 PTILIGSSGVGRTFTKEVIEAMASFNEKPLIL---ALSNPTSQSECTAEEAYTWSKGRAIFASG 471 (590)
Q Consensus 411 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF---aLSNPt~~aEctpedA~~wt~G~aifAsG 471 (590)
||+++=+.++. ++.+-..+.+.+ ...=+|+ ||+++. =+-.-.++-+-..++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~-g~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTA-GLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhc-CCCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999988864 444444444432 2222332 344444 222333444445678888887
No 467
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.40 E-value=1.4e+02 Score=27.19 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=44.7
Q ss_pred CCCCcccchhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCee
Q 007782 198 LGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 277 (590)
Q Consensus 198 lG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~l 277 (590)
.|..|-...--+..+-......+|+. |+|-+|||. .++ +.+-++|.+-+.+|++.++..+ |++.
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~ND------~~~------~~~~~~~~~~~~~~i~~i~~~~-p~~~ 81 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTND------LVL------NRDPDTAPDRLRALIDQMRAAN-PDVK 81 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCcc------ccc------CCCHHHHHHHHHHHHHHHHHhC-CCeE
Confidence 44445444444444434455566644 678889973 332 2567899999999999999988 8776
Q ss_pred eeee
Q 007782 278 IQFE 281 (590)
Q Consensus 278 IqfE 281 (590)
|-|-
T Consensus 82 ii~~ 85 (157)
T cd01833 82 IIVA 85 (157)
T ss_pred EEEE
Confidence 6553
No 468
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=41.22 E-value=31 Score=36.07 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.|+|+|||-+|+.+|-.|.+. | .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 489999999999999888642 5 357888875
No 469
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=41.22 E-value=20 Score=39.38 Aligned_cols=138 Identities=20% Similarity=0.322 Sum_probs=74.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh-----cCcEEEEcCCCccc--CCCc--CCCchhchhhccc----
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET-----RKKICLVDSKGLIV--SSRK--DSLQHFKKPWAHE---- 395 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA-----~~~i~lvD~~GLv~--~~R~--~~l~~~k~~fA~~---- 395 (590)
+..+++++|.|++|+|+|..+..-+-+. .+-.-|- .+-.|-+=--||-. ++|. .+|-+-...|.++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g-~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~ 116 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSG-SVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKE 116 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCC-ceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHh
Confidence 4689999999999999999987754321 1111111 12244443445532 2222 1343433334331
Q ss_pred ------------cC------------------CCCCHHHHhcccCCcEEEeccCCCCCC-CHHHHHHHHcCCCCcEEEec
Q 007782 396 ------------HE------------------PVNNLLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEKPLILAL 444 (590)
Q Consensus 396 ------------~~------------------~~~~L~e~V~~vkPtvLIG~S~~~g~F-t~evv~~Ma~~~erPIIFaL 444 (590)
++ .++.|.|+++. | |+.+.-.-| -+.+-++.-..++--.||..
T Consensus 117 f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~t--P----~VcSnYSpkyvdk~y~~~~~fk~GNAIfTf 190 (446)
T KOG3851|consen 117 FNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDT--P----GVCSNYSPKYVDKVYKELMNFKKGNAIFTF 190 (446)
T ss_pred cCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccC--C----CcccccChHHHHHHHHHHHhccCCceEEec
Confidence 01 12378888887 6 333321112 22344445567788899999
Q ss_pred CCCCCCCCCCHHHHh-------cc----cCCcEEEecCCC
Q 007782 445 SNPTSQSECTAEEAY-------TW----SKGRAIFASGSP 473 (590)
Q Consensus 445 SNPt~~aEctpedA~-------~w----t~G~aifAsGSP 473 (590)
-|---|+-=-|+-+. .. ++-..||+|+-|
T Consensus 191 PntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~ 230 (446)
T KOG3851|consen 191 PNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLP 230 (446)
T ss_pred CCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCcc
Confidence 884444443343322 11 334579999866
No 470
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=41.19 E-value=1.9e+02 Score=31.37 Aligned_cols=137 Identities=13% Similarity=0.168 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceecc-CCCchHHHHHHHHHHHHHHhC-CCCccceEEEeCcC
Q 007782 262 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGAG 339 (590)
Q Consensus 262 defv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~A~r~~g-~~l~d~riv~~GAG 339 (590)
.+.+.. -.+| .++++ +-.+. +-+.+.+.+| .++||+|- |-..=-.=+||=++.-.+..| +++++.+|.++|-+
T Consensus 91 ~Dtarv-ls~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~ 165 (336)
T PRK03515 91 KDTARV-LGRM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDA 165 (336)
T ss_pred HHHHHH-HHHh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCC
Confidence 334433 3456 44433 22332 3344444554 47899993 222223456777777777776 47999999999986
Q ss_pred hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc-cC---CCCCHHHHhcccCCcEEE
Q 007782 340 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTILI 415 (590)
Q Consensus 340 sAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~---~~~~L~e~V~~vkPtvLI 415 (590)
.- ++++-++.++.+ .|+ ++.++-.+|+.-.+ .+-..-+.+++. +. -..++.|++++ .||+.
T Consensus 166 ~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvy 230 (336)
T PRK03515 166 RN--NMGNSLLEAAAL-TGL-------DLRLVAPKACWPEA---ALVTECRALAQKNGGNITLTEDIAEGVKG--ADFIY 230 (336)
T ss_pred cC--cHHHHHHHHHHH-cCC-------EEEEECCchhcCcH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 33 477777776655 474 68888887773321 111112233332 11 23689999997 99999
Q ss_pred ecc
Q 007782 416 GSS 418 (590)
Q Consensus 416 G~S 418 (590)
-.+
T Consensus 231 td~ 233 (336)
T PRK03515 231 TDV 233 (336)
T ss_pred ecC
Confidence 764
No 471
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=40.96 E-value=34 Score=37.31 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=26.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999877652 5 578889983
No 472
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=40.83 E-value=34 Score=37.48 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=22.7
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 007782 333 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 377 (590)
Q Consensus 333 iv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv 377 (590)
|||+|+|.||+.-|-..+. .| .++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CC-------CEEEEEECCccC
Confidence 7999999999888766654 37 478999998865
No 473
>PRK07890 short chain dehydrogenase; Provisional
Probab=40.78 E-value=66 Score=31.46 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=24.0
Q ss_pred CccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+++.+++|.||++ ||...++..+.+ .|. +++++|+.
T Consensus 3 l~~k~vlItGa~~---~IG~~la~~l~~-~G~-------~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGP---GLGRTLAVRAAR-AGA-------DVVLAART 38 (258)
T ss_pred cCCCEEEEECCCC---cHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 5678999999844 455555555554 363 68888764
No 474
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=40.68 E-value=21 Score=40.57 Aligned_cols=44 Identities=32% Similarity=0.312 Sum_probs=32.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCC--ChhhhcCcE-----EEEcCCCcccC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKA--PVEETRKKI-----CLVDSKGLIVS 379 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~--s~eeA~~~i-----~lvD~~GLv~~ 379 (590)
+||+|+|||-||++.|..|+++ |. +.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999875 64 445666542 12567776664
No 475
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=40.55 E-value=28 Score=38.77 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=27.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+||||+|+|-+|+-.|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 589999999999999998886542 1 2358888875
No 476
>PLN02366 spermidine synthase
Probab=40.44 E-value=61 Score=34.61 Aligned_cols=123 Identities=18% Similarity=0.245 Sum_probs=59.4
Q ss_pred CCceeccCCCchHHHH--HHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 298 THLVFNDDIQGTASVV--LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 298 ~~~~FNDDiQGTaaV~--LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
+..+.|..+|-|..-- ---.++.+...- --...||+++|.|..+ +++.++.. .+ .+++.+||-+.
T Consensus 59 ~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~-~~~pkrVLiIGgG~G~--~~rellk~----~~------v~~V~~VEiD~ 125 (308)
T PLN02366 59 KVLVLDGVIQLTERDECAYQEMITHLPLCS-IPNPKKVLVVGGGDGG--VLREIARH----SS------VEQIDICEIDK 125 (308)
T ss_pred eEEEECCEeeecCccHHHHHHHHHHHHHhh-CCCCCeEEEEcCCccH--HHHHHHhC----CC------CCeEEEEECCH
Confidence 3455555666554431 122222222211 1135799999999865 34444332 12 26899999887
Q ss_pred cccCCCcCCCchhchhhccccCC--CCCHHHHhccc---CCcEEEeccCC-----CCCCCHHHHHHHH
Q 007782 376 LIVSSRKDSLQHFKKPWAHEHEP--VNNLLDAVKVI---KPTILIGSSGV-----GRTFTKEVIEAMA 433 (590)
Q Consensus 376 Lv~~~R~~~l~~~k~~fA~~~~~--~~~L~e~V~~v---kPtvLIG~S~~-----~g~Ft~evv~~Ma 433 (590)
-+.+--++.++.....+..+.-. ..+-.+.++.. +-|++|--+.. ..+||++..+.+.
T Consensus 126 ~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~ 193 (308)
T PLN02366 126 MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVA 193 (308)
T ss_pred HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHH
Confidence 65532212222211112111000 12333333322 46888864433 2357888888875
No 477
>PRK07538 hypothetical protein; Provisional
Probab=40.40 E-value=33 Score=36.90 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007782 332 RFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~ 351 (590)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68899999999888877654
No 478
>PF12227 DUF3603: Protein of unknown function (DUF3603); InterPro: IPR020909 This entry is represented by Bacteriophage phiNIT1, Orf that is a member of UPF0736. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry describes proteins of unknown function.
Probab=40.25 E-value=12 Score=38.05 Aligned_cols=26 Identities=46% Similarity=0.799 Sum_probs=17.8
Q ss_pred EEEEecCceeecCCCCCCCcccchhhhHH
Q 007782 183 VIVVTDGERILGLGDLGCQGMGIPVGKLA 211 (590)
Q Consensus 183 viVVTDG~rILGLGDlG~~GmgI~iGKl~ 211 (590)
++|||||+|||-.--. |-.|||-|+-
T Consensus 51 ~fi~TDg~~IlavDt~---gy~ipiRKSR 76 (214)
T PF12227_consen 51 CFIVTDGERILAVDTI---GYKIPIRKSR 76 (214)
T ss_pred eEEEecCCceEEEEec---CCCceeeecc
Confidence 7999999999974333 3456665543
No 479
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=40.25 E-value=36 Score=38.11 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=27.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+.+++|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 45799999999999999988864 253 58888865
No 480
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=40.09 E-value=62 Score=35.73 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchh-----
Q 007782 317 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP----- 391 (590)
Q Consensus 317 ll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~----- 391 (590)
+..++.-....|++.|++++|.++-.-.++.++ ++.|+... .+ |.-.... ++....++.
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGmevv-------~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGMEVV-------GT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCEEE-------EE---EeecCCH-HHHhhHHhhcCCce
Confidence 456666667889999999998776555666533 33587321 11 0000000 001111100
Q ss_pred hccccCCCCCHHHHhcccCCcEEEeccC
Q 007782 392 WAHEHEPVNNLLDAVKVIKPTILIGSSG 419 (590)
Q Consensus 392 fA~~~~~~~~L~e~V~~vkPtvLIG~S~ 419 (590)
..-+..+...+++.++..|||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 0001122346888999999999999765
No 481
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=39.87 E-value=24 Score=43.44 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.3
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
++|++.+|+|+|+|.-|.=||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 467889999999999999999999876 76 7899999874
No 482
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=39.77 E-value=32 Score=36.70 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887531 13 478889886
No 483
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.74 E-value=36 Score=37.94 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.9
Q ss_pred CccceEEEeCcChHHHHHHHHHHH
Q 007782 328 LAEHRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 328 l~d~riv~~GAGsAg~GIA~li~~ 351 (590)
++++||+|+|.|..|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999875
No 484
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=39.61 E-value=71 Score=30.82 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=28.1
Q ss_pred HHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 318 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 318 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+.++...+.-..++++++.|+|+.|..++++... .| .+++.++++
T Consensus 123 ~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 123 YHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 3445555554578999999999866555543322 35 357777654
No 485
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=39.41 E-value=36 Score=36.43 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=25.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 330 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 330 d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
..+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3579999999999999977644 365 46677764
No 486
>PRK06834 hypothetical protein; Provisional
Probab=39.27 E-value=38 Score=37.92 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=27.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
.+..|+|+|||.+|+-.|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45789999999999999988865 375 466777653
No 487
>PRK05868 hypothetical protein; Validated
Probab=39.11 E-value=37 Score=36.25 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007782 331 HRFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~ 351 (590)
.+|+|+|||.||+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999998877654
No 488
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=39.09 E-value=57 Score=36.24 Aligned_cols=85 Identities=16% Similarity=0.280 Sum_probs=55.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchh---chhhcc-ccCCCCCHHHHh
Q 007782 331 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPWAH-EHEPVNNLLDAV 406 (590)
Q Consensus 331 ~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~---k~~fA~-~~~~~~~L~e~V 406 (590)
.+||++|||-.|-.||..|++- |- .+|++.|+. .+..+.+... +..... |..+...|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998753 32 689988874 1111111111 111221 334456899999
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHc
Q 007782 407 KVIKPTILIGSSGVGRTFTKEVIEAMAS 434 (590)
Q Consensus 407 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~ 434 (590)
++ .+++|-+-. +-++..++++-.+
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHH
Confidence 98 588886654 4578888877654
No 489
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=38.92 E-value=34 Score=38.87 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
.|+|+|||.||+..|..+... | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 699999999999999877542 4 4688888653
No 490
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=38.89 E-value=34 Score=42.27 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=27.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
...+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 35799999999999999988865 253 57788765
No 491
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=38.81 E-value=43 Score=38.12 Aligned_cols=79 Identities=11% Similarity=0.275 Sum_probs=47.4
Q ss_pred CCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccc---cCCCCCH
Q 007782 326 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 402 (590)
Q Consensus 326 ~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~---~~~~~~L 402 (590)
..|.+.|++|+|-++-..|+++.+...| |+.. ..++.. .....+.+.+.-+.+... .++...+
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~EL----Gm~v-------v~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~ei 366 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILAREM----GIRV-------SCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTEV 366 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHhC----CCEE-------EEecCc---ccchhHHHHHHHHHhccCcEEecCHHHH
Confidence 6788999999999999999999987653 8732 223321 000000011111111110 1122357
Q ss_pred HHHhcccCCcEEEecc
Q 007782 403 LDAVKVIKPTILIGSS 418 (590)
Q Consensus 403 ~e~V~~vkPtvLIG~S 418 (590)
.+.|+..+||++||.|
T Consensus 367 ~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 367 GDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHhcCCCEEEECc
Confidence 8889999999999976
No 492
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=38.70 E-value=97 Score=34.32 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=61.0
Q ss_pred cceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcC--cEEEEcCCCcccCCCc----CCCchhchhhccccCCCCCH
Q 007782 330 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK--KICLVDSKGLIVSSRK----DSLQHFKKPWAHEHEPVNNL 402 (590)
Q Consensus 330 d~riv~~GA-GsAg~GIA~li~~~~~~~~G~s~eeA~~--~i~lvD~~GLv~~~R~----~~l~~~k~~fA~~~~~~~~L 402 (590)
=-||.|+|| |..|..+|-.|+.. |+-.+ -+ -+.|+|.+- ..++. -+|.+-.-++.+...-..+-
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~-----~l~~~--~~ei~L~L~diD~--~~~~a~g~a~DL~d~a~~~~~~v~i~~~~ 114 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG-----EVFGQ--DQPIALKLLGSER--SKEALEGVAMELEDSLYPLLREVSIGIDP 114 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-----cccCC--CCceEEEEeccCc--cchhhhHHHHHHHHhhhhhcCceEEecCC
Confidence 379999999 99999999987653 54110 01 344553321 12211 01222221222111001233
Q ss_pred HHHhcccCCcEEEeccCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 007782 403 LDAVKVIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPT 448 (590)
Q Consensus 403 ~e~V~~vkPtvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIFaLSNPt 448 (590)
.+.++. .|++|=+.+.+.. -| +++.+.+.++. +.-||+--|||-
T Consensus 115 y~~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv 173 (387)
T TIGR01757 115 YEVFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC 173 (387)
T ss_pred HHHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH
Confidence 466766 8988866665421 23 45677777755 899999999997
No 493
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=38.68 E-value=3.4e+02 Score=30.38 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=27.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
-|.-|+-+|.|+--.||+.-...... .|. ..-+|+.|+..|
T Consensus 254 pD~Vv~~vG~Gg~~aGi~~~f~~~~~--~g~----~~~riiaVEp~~ 294 (427)
T PRK12391 254 PDVVIGCVGGGSNFAGLAFPFLGDKL--EGK----KDTRFIAVEPAA 294 (427)
T ss_pred CCEEEEecCchHHHHHHHHHHHHHHh--cCC----CCceEEEEeecc
Confidence 48889999999888899874433221 242 124788888864
No 494
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=38.38 E-value=30 Score=36.52 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.7
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007782 332 RFLFLGAGEAGTGIAELIAL 351 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~ 351 (590)
+|+|+|||.||+..|-.|..
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988765
No 495
>PRK09897 hypothetical protein; Provisional
Probab=38.34 E-value=40 Score=38.66 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 332 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 332 riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
+|+|+|+|.+|+.+|..|+.. + ..-+|.++|+.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999762 2 12479999984
No 496
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=38.32 E-value=43 Score=38.86 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 375 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~G 375 (590)
.+.||+|+|+|.||+..|..+... |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 579999999999999999888753 63 477787663
No 497
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=38.28 E-value=44 Score=34.87 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=28.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 007782 329 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 377 (590)
Q Consensus 329 ~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~GLv 377 (590)
...+|+|+|+|-+|+.+|-.|.+. |. ++.++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 357899999999999998887653 53 67777766543
No 498
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=38.27 E-value=32 Score=34.05 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=23.5
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+++.++||.||++ ||...++..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlVtGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGS---GIGRALVERFLA-EGA-------RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCc---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 36788999999853 444445554444 363 58888764
No 499
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=38.24 E-value=25 Score=32.57 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=19.8
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHH
Q 007782 402 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 433 (590)
Q Consensus 402 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma 433 (590)
+.+..+.-+-|+||+.|+.|+ |+-+|+++.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~ 124 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGN--SPNVIEAAE 124 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS---SHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCCC--CHHHHHHHH
Confidence 444433345799999999887 788988874
No 500
>PRK09242 tropinone reductase; Provisional
Probab=38.10 E-value=1.2e+02 Score=29.74 Aligned_cols=37 Identities=30% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 007782 327 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 374 (590)
Q Consensus 327 ~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i~lvD~~ 374 (590)
.+++.+++|.||++ ||...++..+.+ .|. ++++++++
T Consensus 6 ~~~~k~~lItGa~~---gIG~~~a~~l~~-~G~-------~v~~~~r~ 42 (257)
T PRK09242 6 RLDGQTALITGASK---GIGLAIAREFLG-LGA-------DVLIVARD 42 (257)
T ss_pred ccCCCEEEEeCCCc---hHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 46788999999843 333444444433 363 58888764
Done!