Query 007784
Match_columns 590
No_of_seqs 221 out of 923
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 15:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1134 Uncharacterized conser 100.0 7E-101 2E-105 854.8 53.1 564 1-571 135-709 (728)
2 COG5594 Uncharacterized integr 100.0 6.4E-97 1E-101 795.3 44.2 533 1-537 148-721 (827)
3 PF02714 DUF221: Domain of unk 100.0 3E-68 6.4E-73 555.4 36.3 323 180-502 1-325 (325)
4 PF04547 Anoctamin: Calcium-ac 99.2 1.2E-08 2.7E-13 111.4 28.9 266 218-502 107-397 (452)
5 PF14703 DUF4463: Domain of un 99.1 1.4E-10 2.9E-15 96.4 6.6 71 91-161 1-85 (85)
6 KOG2513 Protein required for m 98.1 0.0033 7.1E-08 68.4 27.0 249 222-501 260-555 (647)
7 TIGR01659 sex-lethal sex-letha 97.1 0.0014 3.1E-08 68.8 8.0 41 50-96 104-144 (346)
8 KOG0144 RNA-binding protein CU 96.2 0.016 3.6E-07 60.2 8.0 135 52-201 33-189 (510)
9 TIGR01628 PABP-1234 polyadenyl 96.2 0.017 3.7E-07 65.1 8.9 170 55-235 2-200 (562)
10 PLN03134 glycine-rich RNA-bind 95.7 0.093 2E-06 48.0 10.1 37 52-94 33-69 (144)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 95.5 0.044 9.6E-07 57.7 8.4 37 53-95 3-39 (352)
12 TIGR01648 hnRNP-R-Q heterogene 95.5 0.051 1.1E-06 60.6 8.8 38 52-95 57-94 (578)
13 TIGR01628 PABP-1234 polyadenyl 93.7 0.59 1.3E-05 52.7 12.0 37 53-95 178-214 (562)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 93.5 0.25 5.3E-06 52.0 8.1 36 53-94 269-304 (352)
15 TIGR01648 hnRNP-R-Q heterogene 93.5 0.4 8.7E-06 53.6 9.9 39 176-214 268-308 (578)
16 KOG0149 Predicted RNA-binding 93.3 0.24 5.1E-06 48.0 6.8 33 56-94 15-47 (247)
17 KOG4211 Splicing factor hnRNP- 91.9 0.28 6E-06 52.3 5.6 37 51-94 8-44 (510)
18 TIGR01622 SF-CC1 splicing fact 91.5 0.52 1.1E-05 51.6 7.7 38 52-95 88-125 (457)
19 KOG0117 Heterogeneous nuclear 91.5 1.1 2.5E-05 47.2 9.5 125 52-203 82-234 (506)
20 TIGR01645 half-pint poly-U bin 91.5 0.48 1E-05 53.2 7.3 38 52-95 106-143 (612)
21 KOG0148 Apoptosis-promoting RN 90.8 0.48 1.1E-05 46.8 5.7 150 53-234 6-185 (321)
22 PLN03121 nucleic acid binding 90.4 0.45 9.8E-06 46.7 5.1 37 52-94 4-40 (243)
23 TIGR01642 U2AF_lg U2 snRNP aux 90.0 1.2 2.7E-05 49.3 9.1 36 53-94 295-330 (509)
24 PF00076 RRM_1: RNA recognitio 89.6 0.51 1.1E-05 36.3 4.1 33 56-94 1-33 (70)
25 TIGR01622 SF-CC1 splicing fact 89.1 1.5 3.2E-05 48.0 8.6 39 51-95 184-222 (457)
26 PF04059 RRM_2: RNA recognitio 89.0 0.71 1.5E-05 39.0 4.6 38 54-95 2-39 (97)
27 PLN03120 nucleic acid binding 88.1 0.77 1.7E-05 45.8 4.9 35 53-93 4-38 (260)
28 KOG2514 Uncharacterized conser 87.7 4.8 0.0001 46.1 11.3 53 283-335 436-488 (861)
29 smart00362 RRM_2 RNA recogniti 87.5 0.98 2.1E-05 34.2 4.4 34 55-94 1-34 (72)
30 KOG0145 RNA-binding protein EL 87.1 5.9 0.00013 39.0 10.1 145 55-213 43-209 (360)
31 PF14259 RRM_6: RNA recognitio 86.3 1 2.2E-05 35.0 3.9 32 56-93 1-32 (70)
32 PF13893 RRM_5: RNA recognitio 84.2 1.6 3.5E-05 32.4 3.9 24 177-200 21-44 (56)
33 PF07810 TMC: TMC domain; Int 82.8 11 0.00023 32.8 8.8 54 415-473 47-105 (111)
34 KOG0109 RNA-binding protein LA 82.6 1.4 3E-05 44.1 3.7 37 56-98 5-41 (346)
35 KOG1548 Transcription elongati 81.6 6.2 0.00013 40.6 7.9 44 157-200 286-337 (382)
36 cd00590 RRM RRM (RNA recogniti 81.3 2.7 5.9E-05 31.9 4.5 34 55-94 1-34 (74)
37 KOG1365 RNA-binding protein Fu 78.2 17 0.00038 37.9 9.9 27 173-199 320-346 (508)
38 KOG4206 Spliceosomal protein s 76.2 2.6 5.5E-05 40.8 3.2 45 175-219 50-96 (221)
39 PF00076 RRM_1: RNA recognitio 75.3 3.1 6.7E-05 31.8 3.1 26 174-199 36-61 (70)
40 KOG0125 Ataxin 2-binding prote 75.2 7.4 0.00016 39.8 6.3 39 52-96 95-133 (376)
41 smart00361 RRM_1 RNA recogniti 74.5 3.8 8.3E-05 32.1 3.4 26 175-200 35-60 (70)
42 PF14259 RRM_6: RNA recognitio 71.6 4 8.7E-05 31.5 2.9 24 175-198 37-60 (70)
43 TIGR01659 sex-lethal sex-letha 70.0 6.1 0.00013 41.6 4.7 37 52-94 192-228 (346)
44 PF14257 DUF4349: Domain of un 69.3 1.3E+02 0.0028 30.2 15.1 77 72-170 105-184 (262)
45 KOG0107 Alternative splicing f 68.7 4.5 9.7E-05 37.7 2.9 36 174-209 44-81 (195)
46 KOG0123 Polyadenylate-binding 66.2 21 0.00045 38.0 7.8 34 56-95 79-112 (369)
47 KOG0122 Translation initiation 65.9 6.8 0.00015 38.4 3.6 37 52-94 188-224 (270)
48 smart00360 RRM RNA recognition 65.5 8.5 0.00018 28.6 3.6 30 58-93 1-30 (71)
49 KOG0117 Heterogeneous nuclear 65.0 12 0.00027 39.7 5.5 84 151-234 94-185 (506)
50 KOG0127 Nucleolar protein fibr 63.0 9.3 0.0002 41.6 4.3 35 54-94 293-327 (678)
51 PF07292 NID: Nmi/IFP 35 domai 62.4 1.3 2.8E-05 36.7 -1.7 25 50-78 49-73 (88)
52 smart00360 RRM RNA recognition 61.8 9.6 0.00021 28.3 3.3 24 175-198 36-59 (71)
53 smart00362 RRM_2 RNA recogniti 60.9 10 0.00022 28.3 3.3 25 175-199 37-61 (72)
54 COG0724 RNA-binding proteins ( 60.2 13 0.00028 36.4 4.8 37 53-95 115-151 (306)
55 TIGR01649 hnRNP-L_PTB hnRNP-L/ 58.5 14 0.00029 40.9 4.9 36 53-94 2-37 (481)
56 KOG0146 RNA-binding protein ET 57.2 21 0.00045 35.5 5.2 51 174-236 57-112 (371)
57 cd00590 RRM RRM (RNA recogniti 52.7 17 0.00036 27.3 3.3 25 176-200 39-63 (74)
58 PF15176 LRR19-TM: Leucine-ric 50.7 46 0.001 28.1 5.5 24 471-494 8-31 (102)
59 TIGR01645 half-pint poly-U bin 49.8 21 0.00045 40.4 4.6 36 53-94 204-239 (612)
60 PF14605 Nup35_RRM_2: Nup53/35 48.3 25 0.00055 26.0 3.4 32 54-92 2-33 (53)
61 TIGR01649 hnRNP-L_PTB hnRNP-L/ 46.2 31 0.00068 38.0 5.3 38 52-95 274-312 (481)
62 KOG0132 RNA polymerase II C-te 45.6 15 0.00033 41.8 2.6 40 50-95 418-457 (894)
63 PF02654 CobS: Cobalamin-5-pho 44.7 2.9E+02 0.0063 27.2 11.4 123 406-532 86-213 (235)
64 PF02388 FemAB: FemAB family; 44.5 1.9E+02 0.0041 31.2 10.8 83 82-186 227-315 (406)
65 PLN03120 nucleic acid binding 43.4 41 0.0009 33.7 5.0 35 176-211 42-78 (260)
66 KOG0122 Translation initiation 41.2 32 0.0007 33.9 3.7 36 175-210 229-266 (270)
67 KOG4208 Nucleolar RNA-binding 40.1 27 0.00059 33.5 3.0 25 174-198 89-113 (214)
68 PF06790 UPF0259: Uncharacteri 39.4 3.4E+02 0.0075 27.1 10.8 81 315-395 71-153 (248)
69 KOG4212 RNA-binding protein hn 38.6 43 0.00093 35.7 4.4 43 49-96 40-82 (608)
70 KOG4050 Glutamate transporter 38.1 1.8E+02 0.004 26.8 7.8 44 208-251 32-76 (188)
71 KOG1457 RNA binding protein (c 37.1 46 0.001 32.4 4.1 25 53-81 34-58 (284)
72 PF14362 DUF4407: Domain of un 36.6 1.4E+02 0.0029 30.7 7.9 60 444-503 46-107 (301)
73 KOG2150 CCR4-NOT transcription 35.3 1E+02 0.0023 34.2 6.9 24 145-168 119-142 (575)
74 PF10309 DUF2414: Protein of u 35.2 1.2E+02 0.0027 23.3 5.4 39 54-97 6-53 (62)
75 PF06570 DUF1129: Protein of u 33.9 3.8E+02 0.0083 25.7 10.2 21 512-532 182-202 (206)
76 PF11874 DUF3394: Domain of un 33.7 52 0.0011 31.2 3.8 60 486-545 8-67 (183)
77 KOG3142 Prenylated rab accepto 32.2 58 0.0013 31.0 3.9 45 420-464 64-109 (187)
78 TIGR01642 U2AF_lg U2 snRNP aux 32.0 82 0.0018 34.8 5.8 36 175-210 335-372 (509)
79 PF09874 DUF2101: Predicted me 31.9 1.9E+02 0.0041 27.8 7.1 96 437-542 50-151 (206)
80 KOG0113 U1 small nuclear ribon 31.9 60 0.0013 33.0 4.1 36 53-94 101-136 (335)
81 PF11823 DUF3343: Protein of u 30.6 71 0.0015 25.1 3.7 36 178-216 2-37 (73)
82 KOG0130 RNA-binding protein RB 30.5 1.2E+02 0.0025 27.3 5.1 39 51-95 70-108 (170)
83 COG5570 Uncharacterized small 30.3 2.3E+02 0.0049 21.0 5.7 21 96-116 5-25 (57)
84 PF11608 Limkain-b1: Limkain b 30.3 94 0.002 25.6 4.2 41 176-216 38-80 (90)
85 KOG0107 Alternative splicing f 30.1 98 0.0021 29.1 4.8 41 51-97 8-48 (195)
86 KOG0114 Predicted RNA-binding 29.7 49 0.0011 28.3 2.6 24 175-198 55-78 (124)
87 KOG0144 RNA-binding protein CU 29.2 54 0.0012 35.0 3.4 27 175-201 74-100 (510)
88 KOG4205 RNA-binding protein mu 28.7 63 0.0014 33.4 3.8 38 54-97 98-135 (311)
89 KOG0105 Alternative splicing f 28.4 62 0.0013 30.6 3.3 32 52-89 5-36 (241)
90 PF05620 DUF788: Protein of un 27.0 3.6E+02 0.0078 25.2 8.3 62 456-517 56-126 (170)
91 COG4605 CeuC ABC-type enteroch 26.9 7E+02 0.015 25.6 13.2 80 419-505 210-291 (316)
92 PF03208 PRA1: PRA1 family pro 26.6 2.2E+02 0.0048 25.8 6.7 37 428-464 43-80 (153)
93 PLN03121 nucleic acid binding 26.0 1.1E+02 0.0023 30.5 4.6 21 175-195 42-62 (243)
94 PRK11020 hypothetical protein; 25.8 2.7E+02 0.0059 24.1 6.4 48 96-169 5-52 (118)
95 KOG0125 Ataxin 2-binding prote 25.1 64 0.0014 33.2 3.0 50 175-224 134-195 (376)
96 PLN03213 repressor of silencin 24.9 1.1E+02 0.0024 33.2 4.8 38 51-94 8-45 (759)
97 PF15159 PIG-Y: Phosphatidylin 24.8 66 0.0014 25.6 2.4 26 438-463 43-68 (72)
98 PF04059 RRM_2: RNA recognitio 24.6 78 0.0017 26.8 3.0 26 175-200 43-68 (97)
99 KOG0105 Alternative splicing f 24.3 1.3E+02 0.0028 28.5 4.6 29 49-81 111-139 (241)
100 KOG0131 Splicing factor 3b, su 24.2 69 0.0015 30.3 2.8 40 50-95 6-45 (203)
101 KOG0071 GTP-binding ADP-ribosy 24.1 1.3E+02 0.0028 27.4 4.3 60 54-114 54-113 (180)
102 KOG0153 Predicted RNA-binding 24.0 79 0.0017 32.8 3.4 45 175-224 262-309 (377)
103 KOG0108 mRNA cleavage and poly 23.8 76 0.0017 34.5 3.5 36 54-95 19-54 (435)
104 KOG0718 Molecular chaperone (D 23.6 4.9E+02 0.011 28.5 9.2 33 432-464 372-404 (546)
105 PF11945 WASH_WAHD: WAHD domai 22.3 2.9E+02 0.0062 28.5 7.1 39 149-187 44-82 (297)
106 PF08946 Osmo_CC: Osmosensory 21.5 1.2E+02 0.0025 21.8 2.8 19 152-170 16-34 (46)
107 COG5438 Predicted multitransme 21.2 7.4E+02 0.016 26.3 9.8 59 283-341 206-264 (385)
108 KOG4212 RNA-binding protein hn 20.6 1.8E+02 0.004 31.2 5.3 40 173-212 82-123 (608)
No 1
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=7.3e-101 Score=854.76 Aligned_cols=564 Identities=39% Similarity=0.688 Sum_probs=525.1
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEcCCCCCCCCCChHHHHHHHHhh
Q 007784 1 MGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKA 80 (590)
Q Consensus 1 i~Ni~~~s~~lw~h~~~~~~~~~~~~~~l~~e~~~~~~~R~~~l~~~~~~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~ 80 (590)
||||+.+|+++|+|++++|++++++|+++++||++++.+|++++.++..++++.|++++|+|+ ..+++..+..+++|+.
T Consensus 135 ~snv~~~s~~lw~Hv~~~y~~~~~~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~-~~~~s~~~~~~~~~~~ 213 (728)
T KOG1134|consen 135 ISNVQPGSSLLWAHVFFTYLFTFFTLFILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPP-PDGVSVSVIVRHFFSL 213 (728)
T ss_pred heeccCCCCCEEEEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccC-CCCCchhhHHhhhhhc
Confidence 689999999999999999999999999999999999999999999999999999999999993 3334557777888888
Q ss_pred hCCCceeEEEEeccchhHHHHHHHHHHHH-HHHHHHHHHHhhcccCCCCCCCCCcccccccCCCCccccHHHHHHHHHHH
Q 007784 81 IYPDTFYRSMVVTNNKEANKIYEELEGYK-KKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKE 159 (590)
Q Consensus 81 ~~p~~v~~v~~~~d~~~l~~L~~~r~~~~-~~Le~~~~~~~~~k~~~~~~~~rP~~~~~~~~~~g~kvd~i~~~~~~l~~ 159 (590)
.+|+++.++++++|..++.++.+++++.. +++.....+.. .++. +||++|.++||++|+|||+||||++|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~l~~~~~k~~~~~l~~~~~~~~-----~~~~-~rP~~k~~~~~l~gkkvdai~yy~~kl~~ 287 (728)
T KOG1134|consen 214 NHPVKVRSHQVVYNESKLSKLLSKLKKLRENKLYKEHKRLK-----SNPK-KRPKRKLGFCGLFGKKVDAIDYYSEKLQE 287 (728)
T ss_pred cCCceeehhHHHhhHHHHHHHHHHHHHHhHHHHHHhhhhhc-----cccc-cCCcceeeeeeeecceecHHHHHHHHHHH
Confidence 88899999999999999999999999984 33333222211 1122 89999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccCCCCceeeeeCCCCCCeeeCCcCcchHHHHHHHHHHHHHH
Q 007784 160 IIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVYVIV 239 (590)
Q Consensus 160 l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP~P~DI~W~NL~~~~~~r~~R~~~~~~~~ 239 (590)
++++|+++|+...++++.+.|||||+|+.+|+.|+|..++.++..|.++.||||+||.|+|+..+..+|+.|++++++++
T Consensus 288 l~~~i~~~~~~~~~~~~~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~ 367 (728)
T KOG1134|consen 288 LSEDIEELRESLYEEKPLPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVAL 367 (728)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHH
Confidence 99999999998877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhhcchhhHhhhcccchhhhcchhHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHH
Q 007784 240 ALTIMFYMIPIGLISALTTLDNLKKILPFLKPVINITALKTVLEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVR 319 (590)
Q Consensus 240 ~~l~if~~iPv~~v~~l~~~~~l~~~~p~l~~~~~~~~~~~~i~~~lp~l~l~i~n~llp~ii~~ls~~e~~~s~S~~~~ 319 (590)
+++++||++|+++|++++|+++|++.+||++.+.+.++++++++|+||++++.++++++|.++++++++|||.|+|+.|+
T Consensus 368 ~~li~f~~iPva~V~~l~nl~~l~~~~Pflk~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~ 447 (728)
T KOG1134|consen 368 FLLLFFWIIPVAFVQALTNLEGLSKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEER 447 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHHHHhCCcchhHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 007784 320 AASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIVPLIIYHL 399 (590)
Q Consensus 320 s~~~k~f~f~~vn~~lv~~l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~~~llr~~~l~~~~~ 399 (590)
+.+.|+|+|+++|+|++++++|++++.+..++++|.+++..+|.++|++++||++|++++|+.|.+++++|+.|++++++
T Consensus 448 ~a~~k~~~F~~~nvFl~~~l~~sa~~~~~~~l~~p~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i 527 (728)
T KOG1134|consen 448 SALNKYYIFLLVNVFLVVTLSGSALRQLLSILSTPRLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLL 527 (728)
T ss_pred HHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHhcCHhHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHH
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCHHHHHHhcCC-CCCCCcccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCCCCccc
Q 007784 400 KRKYLCKTEAELKEAWFP-GDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGR 478 (590)
Q Consensus 400 ~~~~~~~T~re~~~~~~~-~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~es~G~ 478 (590)
++.+..+|+|++++.+++ +.+++|..||..+++++|+++||+++|+|+|||++||+++|+|||||++|||.++|||||+
T Consensus 528 ~~~~~~~t~~~~~e~~~p~~~~~~g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~ 607 (728)
T KOG1134|consen 528 KKLFLKSTPRDREERYEPLSSFYFGTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGR 607 (728)
T ss_pred HHHHcccchhhhhhhcCCccccchhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeeccccccccc
Confidence 999999999999999988 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcccchh-hhhHHHHHHHHHHHHHHHhhccccccccchHHHhhhcccC----CCc
Q 007784 479 MWPHMFLRLVAALLLYQITMLGYFGSKKFIYV-GFLIPLPILSLIFVYICQKRFYKSFSDTALEVASRELKET----PSM 553 (590)
Q Consensus 479 ~~~~~~~~~~~~l~l~q~~~~g~f~lk~~~~~-~~~~~l~~~t~~~~~~~~~~~~~~~~~~pl~~~~~~d~~~----~~~ 553 (590)
+||.+++++++|++++|++|+|+|++|+.+.+ .+++|++++|+++|.+|+.+|.|.+.++|++.+..+|..+ ++.
T Consensus 608 ~wp~ih~~ii~~l~l~ql~l~gl~~~k~~~~~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~ 687 (728)
T KOG1134|consen 608 FWPDIHRRIIFGLILFQLILFGLFSLKKGAVASVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNM 687 (728)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhhhccccccccchhhhhhccCCccccCCCh
Confidence 99999999999999999999999999998664 5999999999999999999999999999999999776442 222
Q ss_pred ----cccccccCCCCCCCCCCC
Q 007784 554 ----EHIFRSYIPLSLNSEKVD 571 (590)
Q Consensus 554 ----~~~~~~Y~~p~l~~~~~~ 571 (590)
+...++|.+|.+.+.+++
T Consensus 688 ~~~~~~~~~~~~~p~~~~~~~~ 709 (728)
T KOG1134|consen 688 ENLYNYLKSAYVLPVFLSGSDS 709 (728)
T ss_pred hhccccccccccCccccccccc
Confidence 457999999999987744
No 2
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=6.4e-97 Score=795.31 Aligned_cols=533 Identities=28% Similarity=0.489 Sum_probs=495.4
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCC-------cccEEEEcCCCCCCCCCChH
Q 007784 1 MGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPE--VRP-------QQFAVLVRDLPDLPKGQSRK 71 (590)
Q Consensus 1 i~Ni~~~s~~lw~h~~~~~~~~~~~~~~l~~e~~~~~~~R~~~l~~~~--~~~-------s~yTVlV~~IP~~~~~~~~~ 71 (590)
|+|++. ++++|+|++..|++.++++|.+++|++.|..+||++++++. ... +++||+++++|.++++ +
T Consensus 148 ~~Nv~~-~n~~~aHvf~~~~f~~~vlfii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~---~ 223 (827)
T COG5594 148 ISNVSP-SNRLYAHVFLSWFFFGYVLFIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS---D 223 (827)
T ss_pred hhcccC-CCceeeeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC---c
Confidence 578865 79999999999999999999999999999999999998876 233 8999999999999998 8
Q ss_pred HHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhc----------cc----------------C
Q 007784 72 EQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAES----------KS----------------A 125 (590)
Q Consensus 72 ~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~----------k~----------------~ 125 (590)
++|+++|+++--+++.+..+|||.+.++++.++|++..+++|.+..++..+ |+ .
T Consensus 224 e~L~~~~~kl~~~~i~~~~l~~~~~~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~ 303 (827)
T COG5594 224 EELKELFDKLKVGEIDSDVLCRDLGTLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPE 303 (827)
T ss_pred hhHHHHHhhcCeeeeccchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhh
Confidence 889999999987888889999999999999999999999999988765321 11 0
Q ss_pred CCCCCCCCccccccc--CCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccCCCC
Q 007784 126 GKPEGTRPTIKTGFL--GLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVD 203 (590)
Q Consensus 126 ~~~~~~rP~~~~~~~--~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~~ 203 (590)
..|+++||+||.+-. +++|||||+|||+++++.+++++|+++|+...+..+.++|||||+|+..||+|+|.+..+++.
T Consensus 304 y~~~~~Rp~~~i~k~~~~i~gKkVdaI~y~s~~l~~l~~~i~~~r~~~~~~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~ 383 (827)
T COG5594 304 YVPDKKRPKHRIKKLNKGIFGKKVDAIDYYSAKLTKLDAEIENARKSLYENTPTKSGFITFKSQASAQIAAQSQIYSRVL 383 (827)
T ss_pred hccccccchhhhhhhhhhhccceecHHHHHHHHHHHHHHHHHHHHhCccccCccccEEEEEehhHHHHHHHHhhhhhhhh
Confidence 235678999997744 678999999999999999999999999998876677889999999999999999999888887
Q ss_pred cee-eeeCCCCCCeeeCCcCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcchhhHhhhcccchhhhc-chhHHHH
Q 007784 204 TWT-VSDAPESRELIWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKKILPFLKPVIN-ITALKTV 281 (590)
Q Consensus 204 ~~~-v~~AP~P~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~~~~l~~~~p~l~~~~~-~~~~~~~ 281 (590)
... ++.||+|+||+|+|+..++++|..|++.++++.++++++|++|||+++.++|++++++.+||++.+.+ .|+++++
T Consensus 384 ~~~~v~iapaPnDi~W~Nl~ls~~~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~i 463 (827)
T COG5594 384 GKLKVEIAPAPNDIIWDNLRLSRKERLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGI 463 (827)
T ss_pred cceeeeecCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHH
Confidence 655 99999999999999999999999999999999999999999999999999999999999999998875 4589999
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHH
Q 007784 282 LEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVL 361 (590)
Q Consensus 282 i~~~lp~l~l~i~n~llp~ii~~ls~~e~~~s~S~~~~s~~~k~f~f~~vn~~lv~~l~~~~~~~l~~~~~~p~~i~~~l 361 (590)
++|+||++++.+++.++|+++++|+.+||..|+|+.|..++.|+|.|+|+|.|+|.+++++..+.+.++.++|.++..++
T Consensus 464 ltglLptv~~~~l~~ivP~fir~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~~s~~~ll 543 (827)
T COG5594 464 LTGLLPTVALSLLMSIVPYFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEPTSIMTLL 543 (827)
T ss_pred HHhhhhHHHHHHHHHHhHHHHHHHHHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcChHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HHhCCcchhHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhccCCHHHHH-HhcCCCCCCCcccchhHHHHHHHHHHhh
Q 007784 362 ANSLPGNATFFLTYVALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAELK-EAWFPGDLGYGTRVPSDMLIVTIVFCYS 440 (590)
Q Consensus 362 ~~~lp~~s~FFi~yii~~~~~~~~~~llr~~~l~~~~~~~~~~~~T~re~~-~~~~~~~f~~~~~y~~~l~~~~i~l~Ys 440 (590)
|+++|++|+||++||+++|+.+.+++|+|+.+|+++.+++++.++|||++. +...++.|+||..||+.+.+++|+++||
T Consensus 544 A~~lpk~SnFfi~~iilqgl~~~~~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYS 623 (827)
T COG5594 544 ANNLPKASNFFISYIILQGLSGFPGTLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYS 623 (827)
T ss_pred HhccHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999998999999999999984 5556888999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhheeeecCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcccch-hhhhHHHHHH
Q 007784 441 CIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQITMLGYFGSKKFIY-VGFLIPLPIL 519 (590)
Q Consensus 441 ~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~es~G~~~~~~~~~~~~~l~l~q~~~~g~f~lk~~~~-~~~~~~l~~~ 519 (590)
+++|+|+.||+++|++.|+++||+++|+++.++||||+.||.+++|+++|+++||+||+|+|++.++++ +.+++|++++
T Consensus 624 iisPlILlf~~v~F~~~ylaykY~l~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~ 703 (827)
T COG5594 624 IISPLILLFGAVYFILNYLAYKYNLIYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVF 703 (827)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcceeEeehHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998866 4599999999
Q ss_pred HHHHHHHHHhhccccccc
Q 007784 520 SLIFVYICQKRFYKSFSD 537 (590)
Q Consensus 520 t~~~~~~~~~~~~~~~~~ 537 (590)
|+++|.+|+..|.|+.++
T Consensus 704 Tvi~~~~~~~~f~pl~~~ 721 (827)
T COG5594 704 TVIFHYYFKKMFDPLSKY 721 (827)
T ss_pred HHHHHHHHHHhhcccccc
Confidence 999999999999966543
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=3e-68 Score=555.39 Aligned_cols=323 Identities=42% Similarity=0.746 Sum_probs=313.1
Q ss_pred EEEEecCHHHHHHHHHhcccCCCCceeeeeCCCCCCeeeCCcCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcch
Q 007784 180 ALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTL 259 (590)
Q Consensus 180 AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP~P~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~~ 259 (590)
|||||+++++|+.|+|..++++|.+|++++||||+||+|+||+.+..+|..|++++++++++++++|++|++++++++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcccchhhhc-chhHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 007784 260 DNLKKILPFLKPVIN-ITALKTVLEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVT 338 (590)
Q Consensus 260 ~~l~~~~p~l~~~~~-~~~~~~~i~~~lp~l~l~i~n~llp~ii~~ls~~e~~~s~S~~~~s~~~k~f~f~~vn~~lv~~ 338 (590)
+++++..|+++++.+ ++...++++|++|+++++++|.++|.++++++++|||.|+|+.|+++++|+|+|+++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988854 4577899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhcCchHHHHHHHHhCCcchhHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhccCCHHHHHHhc-CC
Q 007784 339 VGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAELKEAW-FP 417 (590)
Q Consensus 339 l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~~~llr~~~l~~~~~~~~~~~~T~re~~~~~-~~ 417 (590)
+++++++.+.++.++|+++.+.+|.++|++++||++|++++++++.+++++|+.+++++.+++++..+||||+++.+ ++
T Consensus 161 l~~~~~~~~~~~~~~~~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~ 240 (325)
T PF02714_consen 161 LAGTILSALKNIINNPGSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEP 240 (325)
T ss_pred hhHHHHHHHHHHHhCcchHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999988887777779999999988 99
Q ss_pred CCCCCcccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCCCCccccHHHHHHHHHHHHHHHHHH
Q 007784 418 GDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQIT 497 (590)
Q Consensus 418 ~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~es~G~~~~~~~~~~~~~l~l~q~~ 497 (590)
++|+||..||..+++++++++||+++|+++|+|++||++.|++||||++|||++++||||++||.+++++++|++++|++
T Consensus 241 ~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~~ 320 (325)
T PF02714_consen 241 PPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQFT 320 (325)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 007784 498 MLGYF 502 (590)
Q Consensus 498 ~~g~f 502 (590)
|+|+|
T Consensus 321 ~~g~f 325 (325)
T PF02714_consen 321 MIGLF 325 (325)
T ss_pred HHHhC
Confidence 99986
No 4
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.19 E-value=1.2e-08 Score=111.35 Aligned_cols=266 Identities=16% Similarity=0.170 Sum_probs=160.7
Q ss_pred eCCcCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcchhh-HhhhcccchhhhcchhHHHHHHhHhHHHHHHHHHH
Q 007784 218 WNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDN-LKKILPFLKPVINITALKTVLEAYLPQIALIVFLA 296 (590)
Q Consensus 218 W~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~~~~-l~~~~p~l~~~~~~~~~~~~i~~~lp~l~l~i~n~ 296 (590)
..+...+.++|..|..++..+++++++. -++++.++..++. +.+..... ......+++.+++-++++.++|.
T Consensus 107 ~~~~~~p~~~r~~r~~~s~~ivl~~i~i---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~vl~~v~i~il~~ 179 (452)
T PF04547_consen 107 EMEPYYPPWKRILRYLVSVPIVLLFILI---VIGIVIGVFYLRIYLTEIYSGP----GKQFLASLIPTVLNAVVILILNF 179 (452)
T ss_pred CCccCCcHHHHhhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhhhh
Confidence 4456677888888886665554443322 1222222222211 11110000 01123344455555556666777
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHHHHhCCcchhHHHHHH
Q 007784 297 LLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYV 376 (590)
Q Consensus 297 llp~ii~~ls~~e~~~s~S~~~~s~~~k~f~f~~vn~~lv~~l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~FFi~yi 376 (590)
+...+...+.++|.|+|.|+.|.+...|.|.|+++|.+...... +.+....+.-=+| ...+ -+.-++.++
T Consensus 180 iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~~~~~~~~~-~~~~--------L~~ql~~~~ 249 (452)
T PF04547_consen 180 IYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYGVRQEECQP-CLSR--------LRIQLFTIM 249 (452)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccccCC-CHHH--------HHHHHHHHH
Confidence 78888899999999999999999999999999999999855443 2222110000011 1111 122334444
Q ss_pred HHHHhhhhhHHhhhHHHHHHHHHHHhhccCCHHH------------------HHHhcCCCCCCCc---ccchhHHHHHHH
Q 007784 377 ALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAE------------------LKEAWFPGDLGYG---TRVPSDMLIVTI 435 (590)
Q Consensus 377 i~~~~~~~~~~llr~~~l~~~~~~~~~~~~T~re------------------~~~~~~~~~f~~~---~~y~~~l~~~~i 435 (590)
+++-+.+...+. +.|.+.+..+++-..+..++ -.+-...++++.. ..|..+..-+..
T Consensus 250 ~~~qi~~~~~e~--~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~~~g~~~dY~emviQFGy 327 (452)
T PF04547_consen 250 VTKQIINNLLEV--VLPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYDPDGLFDDYLEMVIQFGY 327 (452)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCCcCCchHHHHHHHHHHHH
Confidence 455455555554 35555544433211110000 0111234555543 789999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCC---CCccccHHHHHHHHHHHHHHHHHHHHHHH
Q 007784 436 VFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAY---ESYGRMWPHMFLRLVAALLLYQITMLGYF 502 (590)
Q Consensus 436 ~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~---es~G~~~~~~~~~~~~~l~l~q~~~~g~f 502 (590)
...|+++.|+...++++.-++-.-+|++.+++.++||. .++=-.|-.++..+...-++....++++.
T Consensus 328 v~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN~~li~~~ 397 (452)
T PF04547_consen 328 VTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITNAALIAFT 397 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998653 22224798988887777777666666554
No 5
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=99.11 E-value=1.4e-10 Score=96.39 Aligned_cols=71 Identities=41% Similarity=0.701 Sum_probs=57.9
Q ss_pred EeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCC----------CCCCCcccccccCCCC-ccccHHHHHHHH
Q 007784 91 VVTNNKEANKIYEELEGYKKKLARAEAVYAESKSA---GKP----------EGTRPTIKTGFLGLLG-KRVDAIEYYNEK 156 (590)
Q Consensus 91 ~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~---~~~----------~~~rP~~~~~~~~~~g-~kvd~i~~~~~~ 156 (590)
++||+++|.+|+++|+++.++||.++.+|.+..+. ..| ...||.++.|++|++| ++||+||||++|
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~~e 80 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYREE 80 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHHHH
Confidence 58999999999999999999999999998764320 000 1246677779999888 999999999999
Q ss_pred HHHHH
Q 007784 157 IKEII 161 (590)
Q Consensus 157 l~~l~ 161 (590)
|++|+
T Consensus 81 l~~Ln 85 (85)
T PF14703_consen 81 LKELN 85 (85)
T ss_pred HHHhC
Confidence 99875
No 6
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=0.0033 Score=68.41 Aligned_cols=249 Identities=18% Similarity=0.242 Sum_probs=140.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcchhhHhhhcccchhhhcchhHHHHHHhHhHHHHHHHHHHHHHHH
Q 007784 222 NIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKKILPFLKPVINITALKTVLEAYLPQIALIVFLALLPKL 301 (590)
Q Consensus 222 ~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~~~~l~~~~p~l~~~~~~~~~~~~i~~~lp~l~l~i~n~llp~i 301 (590)
..+.|.|.+|+..+.+-++++++....++.+...- ++. |.......| +.+ +-.++|++++.++..++..+
T Consensus 260 ~yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~--ie~------~~~s~~~~~-~~s-ils~lP~iv~~~li~~~t~~ 329 (647)
T KOG2513|consen 260 YYPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQ--IEV------WVLSDYGGP-LIS-ILSYLPTIVYAVLIPVLTRI 329 (647)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHH------HHHHHcCCc-hHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888877776665555554443321 111 111111223 223 34678988888877766655
Q ss_pred HHH----HHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHHHHhCCcchhHHHHHHH
Q 007784 302 LLF----LSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVA 377 (590)
Q Consensus 302 i~~----ls~~e~~~s~S~~~~s~~~k~f~f~~vn~~lv~~l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~FFi~yii 377 (590)
-++ |.++|.|.++|..+++...|.+.|+|+|.++-....+-+.. |-...-..++.-+-. +.++
T Consensus 330 Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~-------d~~~Lk~~l~~~li~------sQ~l 396 (647)
T KOG2513|consen 330 YKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLR-------DMELLKQQLATLLIT------SQSL 396 (647)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHH------HHHH
Confidence 554 55899999999999999999999999999985544332211 111122222221110 0000
Q ss_pred HHHhhhhhHHhhhHHHHHH----------HHHHHhhc---cCCHHHHH---------------Hhc--------CC--CC
Q 007784 378 LQFFVGYGLELSRIVPLII----------YHLKRKYL---CKTEAELK---------------EAW--------FP--GD 419 (590)
Q Consensus 378 ~~~~~~~~~~llr~~~l~~----------~~~~~~~~---~~T~re~~---------------~~~--------~~--~~ 419 (590)
. ..++... |.+. +...+.+. ..++.+.+ +.. +. .+
T Consensus 397 ~-----~~~e~~~--p~f~~~~~r~~~~~~f~t~~~ae~~~s~~~~i~~~~~~~~~~s~~~~a~~~~~~~qa~~E~~~~~ 469 (647)
T KOG2513|consen 397 L-----NLMEIAL--PYFKIRTKRYENYIRFRTKSFAEELASAQAKIDGESPGFPAPSREPEAQLFPSLKQAELESGLAE 469 (647)
T ss_pred H-----HHHhhcc--hHHHHhhhhhhhhhhHHHHHHHHhhccchhhhcccccCCCCcccccchhhcccchhhhhcchhhh
Confidence 0 0111100 0000 00000000 00111111 000 01 11
Q ss_pred CC-CcccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCC----CCccccHHHHHHHHHHHHHHH
Q 007784 420 LG-YGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAY----ESYGRMWPHMFLRLVAALLLY 494 (590)
Q Consensus 420 f~-~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~----es~G~~~~~~~~~~~~~l~l~ 494 (590)
+| --..|=.+.+-|-..+.||++.|+-..+|++--++.+=+|-+.++.+.+||. ++=| .|..++..+-+--++.
T Consensus 470 ydgtf~Dylel~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG-~Wq~~l~~lSvls~vt 548 (647)
T KOG2513|consen 470 YDGTFDDYLELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIG-AWQNALELLSVLSCVT 548 (647)
T ss_pred hcchhHHHHHHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhH-HHHHHHHHHHHHHHHH
Confidence 12 2234556777888899999999999999999999999999999999998775 4555 5888876655444443
Q ss_pred HHHHHHH
Q 007784 495 QITMLGY 501 (590)
Q Consensus 495 q~~~~g~ 501 (590)
-..++|+
T Consensus 549 ncaLi~~ 555 (647)
T KOG2513|consen 549 NCALIGM 555 (647)
T ss_pred hHHHHhc
Confidence 3334443
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.10 E-value=0.0014 Score=68.75 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=34.8
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccch
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 96 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~ 96 (590)
.+++.+|.|.|||.+++ +++|+++|+++ +.|.+|.++.|..
T Consensus 104 ~~~~~~LfVgnLp~~~t----e~~L~~lF~~~--G~V~~v~i~~d~~ 144 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMT----DRELYALFRTI--GPINTCRIMRDYK 144 (346)
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEecCC
Confidence 35678999999999987 69999999997 5699999988753
No 8
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=96.18 E-value=0.016 Score=60.16 Aligned_cols=135 Identities=17% Similarity=0.287 Sum_probs=74.2
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHH------HHHHHHHHHHHHHHHHHHHhhcccC
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANK------IYEELEGYKKKLARAEAVYAESKSA 125 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~------L~~~r~~~~~~Le~~~~~~~~~k~~ 125 (590)
+.--+.|--||+... +++|+++||++ |.|.+|.+.+|-..=.. ....|+++.+ +...+...|+-
T Consensus 33 ~~vKlfVgqIprt~s----E~dlr~lFe~y--g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~----a~~Alhn~ktl 102 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTAS----EKDLRELFEKY--GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADE----AINALHNQKTL 102 (510)
T ss_pred hhhhheeccCCcccc----HHHHHHHHHHh--CceeEEEeecccccCcccceEEEEeccHHHHHH----HHHHhhccccc
Confidence 344577999999775 79999999998 78999999987532100 0011222211 11111111110
Q ss_pred -----------CCCCCCCC-cccccccCCCCccccHHHHHHHHHHHHHHH---HHHHHh-hhhhccccceEEEEecCHHH
Q 007784 126 -----------GKPEGTRP-TIKTGFLGLLGKRVDAIEYYNEKIKEIIPK---LEAEQK-ITLKEKQLGAALVFFTSRVA 189 (590)
Q Consensus 126 -----------~~~~~~rP-~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~---I~~~~~-~~~~~~~~~~AFVtF~s~~~ 189 (590)
.+.|++|- ..+.-|.|+..|+. -+++++++-.+ |++.+- +.......|+|||+|.+.+.
T Consensus 103 pG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~-----te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~ 177 (510)
T KOG0144|consen 103 PGMHHPVQVKYADGERERIVEERKLFVGMLSKQC-----TENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEM 177 (510)
T ss_pred CCCCcceeecccchhhhccccchhhhhhhccccc-----cHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHH
Confidence 01112221 11222445555554 23455555443 232211 11134578999999999999
Q ss_pred HHHHHHhcccCC
Q 007784 190 AASAAQSLHAQL 201 (590)
Q Consensus 190 a~~a~q~~~~~~ 201 (590)
|..|...++...
T Consensus 178 A~~Aika~ng~~ 189 (510)
T KOG0144|consen 178 AVAAIKALNGTQ 189 (510)
T ss_pred HHHHHHhhccce
Confidence 999998877643
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=96.15 E-value=0.017 Score=65.10 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=85.3
Q ss_pred EEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHH------HHHHHHHHHHHHHHHHHHHhhcccCC-C
Q 007784 55 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANK------IYEELEGYKKKLARAEAVYAESKSAG-K 127 (590)
Q Consensus 55 TVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~------L~~~r~~~~~~Le~~~~~~~~~k~~~-~ 127 (590)
||.|.|||.+++ +++|+++|+++ |.|.+|.+++|...-.. -....+.+.+-++.........+.-. .
T Consensus 2 sl~VgnLp~~vt----e~~L~~~F~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVT----EAKLYDLFKPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 799999999986 79999999998 67999999988541000 01222333333332211000000000 0
Q ss_pred CCCCCCcccc-c----ccCCCCccccHHHHHHHHHHHHHHH---HHHHHhhh-hhccccceEEEEecCHHHHHHHHHhcc
Q 007784 128 PEGTRPTIKT-G----FLGLLGKRVDAIEYYNEKIKEIIPK---LEAEQKIT-LKEKQLGAALVFFTSRVAAASAAQSLH 198 (590)
Q Consensus 128 ~~~~rP~~~~-~----~~~~~g~kvd~i~~~~~~l~~l~~~---I~~~~~~~-~~~~~~~~AFVtF~s~~~a~~a~q~~~ 198 (590)
.....|..+. + +.+-..+.+|. +.|.++-.+ |...+-.. ...+..|.|||.|.+.++|..|.+.+.
T Consensus 76 ~s~~~~~~~~~~~~~vfV~nLp~~~~~-----~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ln 150 (562)
T TIGR01628 76 WSQRDPSLRRSGVGNIFVKNLDKSVDN-----KALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVN 150 (562)
T ss_pred cccccccccccCCCceEEcCCCccCCH-----HHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhc
Confidence 0001111111 1 11111122221 222222222 11110000 122457899999999999999998764
Q ss_pred cCC--CCceeee-----------eCCCCCCeeeCCcCcchHHHHHHHHHH
Q 007784 199 AQL--VDTWTVS-----------DAPESRELIWNNLNIKFFQRQIRQYVV 235 (590)
Q Consensus 199 ~~~--~~~~~v~-----------~AP~P~DI~W~NL~~~~~~r~~R~~~~ 235 (590)
... ...+.+. ..+..+.|.-.||..+..+..++.++.
T Consensus 151 g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~ 200 (562)
T TIGR01628 151 GMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA 200 (562)
T ss_pred ccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH
Confidence 321 1112211 223345578888888777776776554
No 10
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.71 E-value=0.093 Score=47.96 Aligned_cols=37 Identities=8% Similarity=0.115 Sum_probs=30.1
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
...+|.|.|||.+.+ +++|+++|+++ |.|.++.++.|
T Consensus 33 ~~~~lfVgnL~~~~t----e~~L~~~F~~~--G~I~~v~i~~d 69 (144)
T PLN03134 33 MSTKLFIGGLSWGTD----DASLRDAFAHF--GDVVDAKVIVD 69 (144)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEEec
Confidence 355899999999886 79999999986 67888876553
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=95.54 E-value=0.044 Score=57.68 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=32.5
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
.-+|+|.|||.+++ +++|+++|+++ |.|.+|.+++|-
T Consensus 3 ~~~l~V~nLp~~~~----e~~l~~~F~~~--G~i~~v~i~~d~ 39 (352)
T TIGR01661 3 KTNLIVNYLPQTMT----QEEIRSLFTSI--GEIESCKLVRDK 39 (352)
T ss_pred CcEEEEeCCCCCCC----HHHHHHHHHcc--CCEEEEEEEEcC
Confidence 35899999999887 79999999997 689999999874
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=95.48 E-value=0.051 Score=60.59 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=33.2
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
+..+|.|.|||.++. +++|++.|+++ |.|.++.+.+|.
T Consensus 57 ~~~~lFVgnLp~~~t----Ed~L~~~F~~~--G~I~~vrl~~D~ 94 (578)
T TIGR01648 57 RGCEVFVGKIPRDLY----EDELVPLFEKA--GPIYELRLMMDF 94 (578)
T ss_pred CCCEEEeCCCCCCCC----HHHHHHHHHhh--CCEEEEEEEECC
Confidence 457999999999886 79999999997 679999998884
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=93.67 E-value=0.59 Score=52.67 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=30.5
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
..+|.|+|+|.+.+ +++|+++|+++ |.|.++.+..|.
T Consensus 178 ~~~l~V~nl~~~~t----ee~L~~~F~~f--G~i~~~~i~~~~ 214 (562)
T TIGR01628 178 FTNLYVKNLDPSVN----EDKLRELFAKF--GEITSAAVMKDG 214 (562)
T ss_pred CCeEEEeCCCCcCC----HHHHHHHHHhc--CCEEEEEEEECC
Confidence 45799999999886 79999999987 678888877653
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=93.50 E-value=0.25 Score=52.01 Aligned_cols=36 Identities=8% Similarity=0.211 Sum_probs=29.9
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.++|.|.|||.+.. +++|+++|+.+ |.|.++.+++|
T Consensus 269 ~~~lfV~NL~~~~~----e~~L~~~F~~f--G~v~~v~i~~d 304 (352)
T TIGR01661 269 GYCIFVYNLSPDTD----ETVLWQLFGPF--GAVQNVKIIRD 304 (352)
T ss_pred CcEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEeEc
Confidence 35799999998765 79999999987 67888887764
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=93.45 E-value=0.4 Score=53.60 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=29.9
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 214 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 214 (590)
..+.|||+|++.++|..|.+.+... ....++|..|..|+
T Consensus 268 ~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 268 IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 4679999999999999999877654 33457777776553
No 16
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=93.34 E-value=0.24 Score=48.01 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=26.8
Q ss_pred EEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 56 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 56 VlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
|.|-|+|-+.. ++.|++||+++ |+|++..++-|
T Consensus 15 ifVggL~w~T~----~~~l~~yFeqf--GeI~eavvitd 47 (247)
T KOG0149|consen 15 IFVGGLAWETH----KETLRRYFEQF--GEIVEAVVITD 47 (247)
T ss_pred EEEcCcccccc----hHHHHHHHHHh--CceEEEEEEec
Confidence 89999998876 69999999998 67776665543
No 17
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=91.91 E-value=0.28 Score=52.28 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=29.7
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.+.+-|.++++|-+.+ .++|.+||+.. .|+++.+.++
T Consensus 8 ~~~~~vr~rGLPwsat----~~ei~~Ff~~~---~I~~~~~~r~ 44 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSAT----EKEILDFFSNC---GIENLEIPRR 44 (510)
T ss_pred CcceEEEecCCCcccc----HHHHHHHHhcC---ceeEEEEecc
Confidence 3568899999999886 69999999875 5777766665
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=91.53 E-value=0.52 Score=51.55 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=32.6
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
..+||.|.|||.+.. +++|+++|+++ |.|.+|.++.|.
T Consensus 88 ~~~~l~V~nlp~~~~----~~~l~~~F~~~--G~v~~v~i~~d~ 125 (457)
T TIGR01622 88 DDRTVFVLQLALKAR----ERDLYEFFSKV--GKVRDVQCIKDR 125 (457)
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEeecC
Confidence 367999999999886 68999999997 689999998763
No 19
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=91.50 E-value=1.1 Score=47.21 Aligned_cols=125 Identities=24% Similarity=0.282 Sum_probs=69.4
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc-chhHH--------HHHHHHHHHHHHHHHHHHHHhhc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN-NKEAN--------KIYEELEGYKKKLARAEAVYAES 122 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d-~~~l~--------~L~~~r~~~~~~Le~~~~~~~~~ 122 (590)
.-.-|.|-+||.|+. +++|.-.|++. |++-++.+-.| .+.-. .--++-+++.+.|...+
T Consensus 82 ~G~EVfvGkIPrD~~----EdeLvplfEki--G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E------ 149 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVF----EDELVPLFEKI--GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE------ 149 (506)
T ss_pred CCceEEecCCCcccc----chhhHHHHHhc--cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc------
Confidence 345799999999987 68999999997 66766666665 11000 00112223333333221
Q ss_pred ccCCCCCCCCCccccccc------CC-CC--ccccHHHHHHHHHHHHHHHHHHHHhh----------hhhccccceEEEE
Q 007784 123 KSAGKPEGTRPTIKTGFL------GL-LG--KRVDAIEYYNEKIKEIIPKLEAEQKI----------TLKEKQLGAALVF 183 (590)
Q Consensus 123 k~~~~~~~~rP~~~~~~~------~~-~g--~kvd~i~~~~~~l~~l~~~I~~~~~~----------~~~~~~~~~AFVt 183 (590)
.||....|+| .+ .| .|.. .+ +++.+++++.-+- ..+.+..|-|||.
T Consensus 150 --------ir~GK~igvc~Svan~RLFiG~IPK~k----~k---eeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFve 214 (506)
T KOG0117|consen 150 --------IRPGKLLGVCVSVANCRLFIGNIPKTK----KK---EEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVE 214 (506)
T ss_pred --------ccCCCEeEEEEeeecceeEeccCCccc----cH---HHHHHHHHhhCCCeeEEEEecCccccccccceEEEE
Confidence 2343334432 12 12 2221 11 2222223221110 0234679999999
Q ss_pred ecCHHHHHHHHHhcccCCCC
Q 007784 184 FTSRVAAASAAQSLHAQLVD 203 (590)
Q Consensus 184 F~s~~~a~~a~q~~~~~~~~ 203 (590)
+.|-.+|.++.|.+.+.+-.
T Consensus 215 Ye~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 215 YESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred eecchhHHHHHhhccCCcee
Confidence 99999999999988766543
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=91.45 E-value=0.48 Score=53.21 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=32.6
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
..++|.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|-
T Consensus 106 ~~~rLfVGnLp~~~t----Ee~Lr~lF~~f--G~I~sV~I~~D~ 143 (612)
T TIGR01645 106 IMCRVYVGSISFELR----EDTIRRAFDPF--GPIKSINMSWDP 143 (612)
T ss_pred CCCEEEEcCCCCCCC----HHHHHHHHHcc--CCEEEEEEeecC
Confidence 457999999999886 79999999997 679999998874
No 21
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=90.84 E-value=0.48 Score=46.76 Aligned_cols=150 Identities=19% Similarity=0.294 Sum_probs=83.0
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-CCC
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKP-EGT 131 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~-~~~ 131 (590)
-+|+.|-|+..+.+ ++-|...|+++ |.|.++.+++| ++.-..+ ..| ...
T Consensus 6 prtlyvgnld~~vt----e~~i~~lf~qi--g~v~~~k~i~~----------------e~~v~wa--------~~p~nQs 55 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVT----EDFIATLFNQI--GSVTKTKVIFD----------------ELKVNWA--------TAPGNQS 55 (321)
T ss_pred CceEEeeccChhhH----HHHHHHHHHhc--cccccceeehh----------------hhccccc--------cCcccCC
Confidence 38999999998876 67788889887 67888888887 1111100 011 122
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHH---HHHHHH--hhhhhccccceEEEEecCHHHHHHHHHhccc-------
Q 007784 132 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIP---KLEAEQ--KITLKEKQLGAALVFFTSRVAAASAAQSLHA------- 199 (590)
Q Consensus 132 rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~---~I~~~~--~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~------- 199 (590)
+|+.+.++--..|.-+..|++ ++|++.-. +|.+.+ ++....|.-|++||+|-+.++|..|.|....
T Consensus 56 k~t~~~hfhvfvgdls~eI~~--e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDN--EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCccccceeEEehhcchhcch--HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 444443321123433333432 33333322 222222 1122346789999999999999999876421
Q ss_pred -------CCCC-------ce---eeeeCCCCCCeeeCCcCcchHHHHHHHHH
Q 007784 200 -------QLVD-------TW---TVSDAPESRELIWNNLNIKFFQRQIRQYV 234 (590)
Q Consensus 200 -------~~~~-------~~---~v~~AP~P~DI~W~NL~~~~~~r~~R~~~ 234 (590)
++|. .+ .-..+|.-..|.-.|+.-...+..+|+.+
T Consensus 134 IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~F 185 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTF 185 (321)
T ss_pred eeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhc
Confidence 1221 11 11345555666666666555555555543
No 22
>PLN03121 nucleic acid binding protein; Provisional
Probab=90.37 E-value=0.45 Score=46.70 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=32.2
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.-|||.|+||+.+.+ +++|++||+.. |+|.+|.+.+|
T Consensus 4 ~g~TV~V~NLS~~tT----E~dLrefFS~~--G~I~~V~I~~D 40 (243)
T PLN03121 4 GGYTAEVTNLSPKAT----EKDVYDFFSHC--GAIEHVEIIRS 40 (243)
T ss_pred CceEEEEecCCCCCC----HHHHHHHHHhc--CCeEEEEEecC
Confidence 349999999999886 79999999986 88999988754
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=90.01 E-value=1.2 Score=49.30 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=30.4
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..+|.|.|||.++. +++|+++|+++ |.|..+.++.|
T Consensus 295 ~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~~~~~~~ 330 (509)
T TIGR01642 295 KDRIYIGNLPLYLG----EDQIKELLESF--GDLKAFNLIKD 330 (509)
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEec
Confidence 47899999999876 79999999997 56888877765
No 24
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=89.64 E-value=0.51 Score=36.34 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=27.8
Q ss_pred EEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 56 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 56 VlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
|.|.|||.+.. +++|+++|+++ |.+..+.+..|
T Consensus 1 l~v~nlp~~~t----~~~l~~~f~~~--g~i~~~~~~~~ 33 (70)
T PF00076_consen 1 LYVGNLPPDVT----EEELRDFFSQF--GKIESIKVMRN 33 (70)
T ss_dssp EEEESETTTSS----HHHHHHHHHTT--STEEEEEEEEE
T ss_pred cEEcCCCCcCC----HHHHHHHHHHh--hhccccccccc
Confidence 68999999887 79999999996 66787877765
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=89.05 E-value=1.5 Score=48.04 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=32.2
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
+...||.|.|||.+++ +++|+++|+.+ |.|.+|.+.+|.
T Consensus 184 p~~~~l~v~nl~~~~t----e~~l~~~f~~~--G~i~~v~~~~d~ 222 (457)
T TIGR01622 184 PNFLKLYVGNLHFNIT----EQELRQIFEPF--GDIEDVQLHRDP 222 (457)
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEcC
Confidence 4468999999999876 79999999987 678888887654
No 26
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=88.97 E-value=0.71 Score=39.01 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=29.5
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
-|||++|||...+ .+.|.+.+++.++|++.=+.+..|.
T Consensus 2 TTvMirNIPn~~t----~~~L~~~l~~~~~g~yDF~YLPiDf 39 (97)
T PF04059_consen 2 TTVMIRNIPNKYT----QEMLIQILDEHFKGKYDFFYLPIDF 39 (97)
T ss_pred eeEEEecCCCCCC----HHHHHHHHHHhccCcceEEEeeeec
Confidence 3999999999887 6888888888887876655555553
No 27
>PLN03120 nucleic acid binding protein; Provisional
Probab=88.06 E-value=0.77 Score=45.76 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=30.5
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
.+||.|.|||.+.+ +++|++||+.+ |+|.+|.+..
T Consensus 4 ~rtVfVgNLs~~tT----E~dLrefFS~~--G~I~~V~I~~ 38 (260)
T PLN03120 4 VRTVKVSNVSLKAT----ERDIKEFFSFS--GDIEYVEMQS 38 (260)
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEee
Confidence 47999999999876 79999999987 7899998764
No 28
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.71 E-value=4.8 Score=46.11 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=43.2
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 007784 283 EAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFI 335 (590)
Q Consensus 283 ~~~lp~l~l~i~n~llp~ii~~ls~~e~~~s~S~~~~s~~~k~f~f~~vn~~l 335 (590)
+..+-.+++.++|.+---+..++...|.+.|.|+.|.|+.-|.|+||++|.-.
T Consensus 436 a~~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~ys 488 (861)
T KOG2514|consen 436 AVIINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYYS 488 (861)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhcC
Confidence 33344455566677777778899999999999999999999999999999754
No 29
>smart00362 RRM_2 RNA recognition motif.
Probab=87.54 E-value=0.98 Score=34.24 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 55 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 55 TVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
||.|+|+|.+.. +++|+++|+++ |.+.++.+..+
T Consensus 1 ~v~i~~l~~~~~----~~~l~~~~~~~--g~v~~~~~~~~ 34 (72)
T smart00362 1 TLFVGNLPPDVT----EEDLKELFSKF--GPIESVKIPKD 34 (72)
T ss_pred CEEEcCCCCcCC----HHHHHHHHHhc--CCEEEEEEecC
Confidence 689999999876 68999999987 56777766654
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=87.11 E-value=5.9 Score=39.02 Aligned_cols=145 Identities=19% Similarity=0.226 Sum_probs=80.0
Q ss_pred EEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHH-------H--HHHHHHHHHHHHHHHHHhhcccC
Q 007784 55 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKI-------Y--EELEGYKKKLARAEAVYAESKSA 125 (590)
Q Consensus 55 TVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L-------~--~~r~~~~~~Le~~~~~~~~~k~~ 125 (590)
-+.|.-+|.+++ +++++..|.+. |+++++.+++|--.=+.| . ++.+++...|.....+ +|+
T Consensus 43 NLIvNYLPQ~MT----qdE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ---~KT- 112 (360)
T KOG0145|consen 43 NLIVNYLPQNMT----QDELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ---NKT- 112 (360)
T ss_pred eeeeeecccccC----HHHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec---cce-
Confidence 366788999987 68999999887 789999999985221111 1 2333344433332211 110
Q ss_pred CCCCCCCCccc---ccccCCCC-ccccHHHHHHHHHHHHHHHHHHH-Hhhhhh----ccccceEEEEecCHHHHHHHHHh
Q 007784 126 GKPEGTRPTIK---TGFLGLLG-KRVDAIEYYNEKIKEIIPKLEAE-QKITLK----EKQLGAALVFFTSRVAAASAAQS 196 (590)
Q Consensus 126 ~~~~~~rP~~~---~~~~~~~g-~kvd~i~~~~~~l~~l~~~I~~~-~~~~~~----~~~~~~AFVtF~s~~~a~~a~q~ 196 (590)
-+-+=.||... ..-+-..| +|. -.++|++.+-.+.-+. -.+++. .-..|.+||-|+....|..|...
T Consensus 113 IKVSyARPSs~~Ik~aNLYvSGlPkt----MtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 113 IKVSYARPSSDSIKDANLYVSGLPKT----MTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEEEeccCChhhhcccceEEecCCcc----chHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 01111244321 10000112 121 1245555555433321 122222 34579999999999999999999
Q ss_pred cccCCCCc----eeeeeCCCC
Q 007784 197 LHAQLVDT----WTVSDAPES 213 (590)
Q Consensus 197 ~~~~~~~~----~~v~~AP~P 213 (590)
+...+|.. ..|+-|-.|
T Consensus 189 lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCc
Confidence 88777753 345555555
No 31
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=86.33 E-value=1 Score=35.01 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=25.3
Q ss_pred EEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 56 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 56 VlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
|+|+|||.+.. +++|.++|+.+ |.|.++.+..
T Consensus 1 v~i~nlp~~~~----~~~l~~~f~~~--g~v~~v~~~~ 32 (70)
T PF14259_consen 1 VYISNLPPSTT----EEDLRNFFSRF--GPVEKVRLIK 32 (70)
T ss_dssp EEEESSTTT------HHHHHHHCTTS--SBEEEEEEEE
T ss_pred CEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEEe
Confidence 68999999875 79999999987 5688887763
No 32
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=84.18 E-value=1.6 Score=32.37 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.2
Q ss_pred cceEEEEecCHHHHHHHHHhcccC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ 200 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~ 200 (590)
.+.|||+|.+.++|..|.+.++..
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 599999999999999999987654
No 33
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=82.81 E-value=11 Score=32.82 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=42.2
Q ss_pred cCCCCCCCccc-----chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCC
Q 007784 415 WFPGDLGYGTR-----VPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAY 473 (590)
Q Consensus 415 ~~~~~f~~~~~-----y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~ 473 (590)
...++|+.+.. |++ .+..+|++|||..|+ ++.+-+++.+++.|+.+++.++|+.
T Consensus 47 ~g~~eF~i~~nvL~liY~Q--tl~WiG~ffsPlLP~---i~~ik~~i~FYvKk~sll~~c~p~~ 105 (111)
T PF07810_consen 47 PGKPEFDIPKNVLDLIYNQ--TLVWIGMFFSPLLPA---INVIKLFILFYVKKFSLLYNCQPPQ 105 (111)
T ss_pred CCCCCccHhhhHHHHHHcc--hhhhhhHHhchhHHH---HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45678887765 444 367889999888777 5677788899999999999998764
No 34
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=82.56 E-value=1.4 Score=44.05 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=31.5
Q ss_pred EEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhH
Q 007784 56 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEA 98 (590)
Q Consensus 56 VlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l 98 (590)
+.|-|+|.+.. +++|+..|+++ |+|.++-|+.|+.=+
T Consensus 5 LFIGNLp~~~~----~~elr~lFe~y--gkVlECDIvKNYgFV 41 (346)
T KOG0109|consen 5 LFIGNLPREAT----EQELRSLFEQY--GKVLECDIVKNYGFV 41 (346)
T ss_pred hhccCCCcccc----hHHHHHHHHhh--CceEeeeeecccceE
Confidence 56889998876 69999999998 899999999887643
No 35
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=81.58 E-value=6.2 Score=40.58 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhh--------hccccceEEEEecCHHHHHHHHHhcccC
Q 007784 157 IKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ 200 (590)
Q Consensus 157 l~~l~~~I~~~~~~~~--------~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 200 (590)
+.++++.+.++..+.. ...+-|.|=|+|++...|..|.|.++.+
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 6777777777766552 3467899999999999999999998754
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=81.33 E-value=2.7 Score=31.87 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 55 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 55 TVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+|.|+|+|.+.. +++++++|+++ |.+.++.+..+
T Consensus 1 ~i~i~~l~~~~~----~~~i~~~~~~~--g~i~~~~~~~~ 34 (74)
T cd00590 1 TLFVGNLPPDVT----EEDLRELFSKF--GKVESVRIVRD 34 (74)
T ss_pred CEEEeCCCCccC----HHHHHHHHHhc--CCEEEEEEeeC
Confidence 588999999875 79999999997 66777766553
No 37
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=78.19 E-value=17 Score=37.86 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.1
Q ss_pred hccccceEEEEecCHHHHHHHHHhccc
Q 007784 173 KEKQLGAALVFFTSRVAAASAAQSLHA 199 (590)
Q Consensus 173 ~~~~~~~AFVtF~s~~~a~~a~q~~~~ 199 (590)
+..++|-|||.|++.++|..|+|..|.
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 346799999999999999999987654
No 38
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=76.24 E-value=2.6 Score=40.81 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=33.2
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeCCCCCCeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWN 219 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DI~W~ 219 (590)
+-.|.|||+|++..+|..|...++.-. ...++++.|-+++||+=.
T Consensus 50 KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 50 KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 458999999999999888877654321 224567788888888755
No 39
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=75.29 E-value=3.1 Score=31.79 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.4
Q ss_pred ccccceEEEEecCHHHHHHHHHhccc
Q 007784 174 EKQLGAALVFFTSRVAAASAAQSLHA 199 (590)
Q Consensus 174 ~~~~~~AFVtF~s~~~a~~a~q~~~~ 199 (590)
.+..+.|||+|++.++|..|.+.++.
T Consensus 36 ~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 36 GKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccccceEEEEEcCHHHHHHHHHHcCC
Confidence 35689999999999999999987654
No 40
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=75.23 E-value=7.4 Score=39.75 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=34.2
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccch
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 96 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~ 96 (590)
...-+.|.|||=..+| .+|+..|+++ |+|.+|.|++|.+
T Consensus 95 ~pkRLhVSNIPFrFRd----pDL~aMF~kf--G~VldVEIIfNER 133 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRD----PDLRAMFEKF--GKVLDVEIIFNER 133 (376)
T ss_pred CCceeEeecCCccccC----ccHHHHHHhh--CceeeEEEEeccC
Confidence 3567999999999985 7899999998 8899999999864
No 41
>smart00361 RRM_1 RNA recognition motif.
Probab=74.54 E-value=3.8 Score=32.06 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.1
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ 200 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~ 200 (590)
...|.|||+|++..+|..|.+.++..
T Consensus 35 ~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 35 HKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34688999999999999999887654
No 42
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=71.65 E-value=4 Score=31.51 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.4
Q ss_pred cccceEEEEecCHHHHHHHHHhcc
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLH 198 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~ 198 (590)
...+.|||+|.|+.+|..|.+..+
T Consensus 37 ~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 37 QSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCEEEEEeCCHHHHHHHHHHCC
Confidence 458999999999999999998764
No 43
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=70.05 E-value=6.1 Score=41.60 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=31.4
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.+.+|.|.|||.+++ +++|+++|+++ +.|.++.+.+|
T Consensus 192 ~~~~lfV~nLp~~vt----ee~L~~~F~~f--G~V~~v~i~~d 228 (346)
T TIGR01659 192 KDTNLYVTNLPRTIT----DDQLDTIFGKY--GQIVQKNILRD 228 (346)
T ss_pred ccceeEEeCCCCccc----HHHHHHHHHhc--CCEEEEEEeec
Confidence 467899999999886 68999999987 67888887765
No 44
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=69.28 E-value=1.3e+02 Score=30.17 Aligned_cols=77 Identities=9% Similarity=0.180 Sum_probs=40.7
Q ss_pred HHHHHHHhhhCC-CceeEEEE-eccc-hhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCcccccccCCCCcccc
Q 007784 72 EQVDSYFKAIYP-DTFYRSMV-VTNN-KEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVD 148 (590)
Q Consensus 72 ~~L~~~F~~~~p-~~v~~v~~-~~d~-~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~rP~~~~~~~~~~g~kvd 148 (590)
+.+.++.+++-. |.|.+-.+ .-|+ .++.++..+.+.+..+.+++...+.+ .++++
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~k----------------------a~~~~ 162 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEK----------------------AKTVE 162 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------cCCHH
Confidence 445555555432 45554444 2343 33445555555544444444443321 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007784 149 AIEYYNEKIKEIIPKLEAEQKI 170 (590)
Q Consensus 149 ~i~~~~~~l~~l~~~I~~~~~~ 170 (590)
.+--.+++|.+++.+|+..+.+
T Consensus 163 d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 163 DLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555678888888888876554
No 45
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=68.65 E-value=4.5 Score=37.67 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=28.6
Q ss_pred ccccceEEEEecCHHHHHHHHHhcccCC--CCceeeee
Q 007784 174 EKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 209 (590)
Q Consensus 174 ~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 209 (590)
..+-|.|||+|++..+|..|...+.... ..++.|+.
T Consensus 44 rnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 44 RNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred ecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 4678999999999999999998886655 34566654
No 46
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=66.18 E-value=21 Score=37.96 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=28.7
Q ss_pred EEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 56 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 56 VlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
|.|.|+|+++++ +.|.++|+.+ |.|.++.+..|.
T Consensus 79 ~~i~nl~~~~~~----~~~~d~f~~~--g~ilS~kv~~~~ 112 (369)
T KOG0123|consen 79 VFIKNLDESIDN----KSLYDTFSEF--GNILSCKVATDE 112 (369)
T ss_pred eeecCCCcccCc----HHHHHHHHhh--cCeeEEEEEEcC
Confidence 999999999875 8899999998 788888776644
No 47
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=65.91 E-value=6.8 Score=38.40 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=30.9
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..-||.|+|+|.+++ +++|++.|..+ |.+.++.+++|
T Consensus 188 D~~tvRvtNLsed~~----E~dL~eLf~~f--g~i~rvylard 224 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMR----EDDLEELFRPF--GPITRVYLARD 224 (270)
T ss_pred ccceeEEecCccccC----hhHHHHHhhcc--CccceeEEEEc
Confidence 456999999999987 68899998876 56888888875
No 48
>smart00360 RRM RNA recognition motif.
Probab=65.48 E-value=8.5 Score=28.62 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=23.1
Q ss_pred EcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 58 VRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 58 V~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
|.|+|.+.. +++|+++|+++ |.|.++.+..
T Consensus 1 i~~l~~~~~----~~~l~~~f~~~--g~v~~~~i~~ 30 (71)
T smart00360 1 VGNLPPDVT----EEELRELFSKF--GKIESVRLVR 30 (71)
T ss_pred CCCCCcccC----HHHHHHHHHhh--CCEeEEEEEe
Confidence 578888776 68999999987 5677776554
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=65.01 E-value=12 Score=39.75 Aligned_cols=84 Identities=14% Similarity=0.155 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHH---HHh--hhhhccccceEEEEecCHHHHHHHHHhcccC---CCCceeeeeCCCCCCeeeCCcC
Q 007784 151 EYYNEKIKEIIPKLEA---EQK--ITLKEKQLGAALVFFTSRVAAASAAQSLHAQ---LVDTWTVSDAPESRELIWNNLN 222 (590)
Q Consensus 151 ~~~~~~l~~l~~~I~~---~~~--~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~---~~~~~~v~~AP~P~DI~W~NL~ 222 (590)
|-++++|.-+-++|-+ .|- +..+....|+|||||.+-..|+.|...+++. ....+.|...-.-.-..=.|+-
T Consensus 94 D~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IP 173 (506)
T KOG0117|consen 94 DVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIP 173 (506)
T ss_pred cccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCC
Confidence 3467788777776654 221 1134567899999999999999999988765 2233445555555666667777
Q ss_pred cchHHHHHHHHH
Q 007784 223 IKFFQRQIRQYV 234 (590)
Q Consensus 223 ~~~~~r~~R~~~ 234 (590)
.++.+--++.-+
T Consensus 174 K~k~keeIlee~ 185 (506)
T KOG0117|consen 174 KTKKKEEILEEM 185 (506)
T ss_pred ccccHHHHHHHH
Confidence 766655554443
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=63.03 E-value=9.3 Score=41.64 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=30.0
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+||.|+|+|-+.+ +++|.++|+++ |+|..+.+|.|
T Consensus 293 ~tVFvRNL~fD~t----EEel~~~fskF--G~v~ya~iV~~ 327 (678)
T KOG0127|consen 293 KTVFVRNLPFDTT----EEELKEHFSKF--GEVKYAIIVKD 327 (678)
T ss_pred ceEEEecCCcccc----HHHHHHHHHhh--ccceeEEEEec
Confidence 8999999998876 79999999998 67777777754
No 51
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=62.36 E-value=1.3 Score=36.69 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=18.3
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHH
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYF 78 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F 78 (590)
..|.+||+|+|||..+. ++.|++..
T Consensus 49 ~vs~rtVlvsgip~~l~----ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLD----EEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCC----hhhheeeE
Confidence 46789999999998554 55555543
No 52
>smart00360 RRM RNA recognition motif.
Probab=61.77 E-value=9.6 Score=28.32 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=20.7
Q ss_pred cccceEEEEecCHHHHHHHHHhcc
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLH 198 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~ 198 (590)
+..+.|||+|++..+|..|.+.++
T Consensus 36 ~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 36 KSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCceEEEEeCCHHHHHHHHHHcC
Confidence 447899999999999999988765
No 53
>smart00362 RRM_2 RNA recognition motif.
Probab=60.85 E-value=10 Score=28.35 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.1
Q ss_pred cccceEEEEecCHHHHHHHHHhccc
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHA 199 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~ 199 (590)
...+.|||+|++..+|..|.+.++.
T Consensus 37 ~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 37 KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 3569999999999999999887653
No 54
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=60.23 E-value=13 Score=36.35 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=30.6
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
.+||.|.|||.+.+ +++|.++|.++ |.+.++.+.+|-
T Consensus 115 ~~~l~v~nL~~~~~----~~~l~~~F~~~--g~~~~~~~~~d~ 151 (306)
T COG0724 115 NNTLFVGNLPYDVT----EEDLRELFKKF--GPVKRVRLVRDR 151 (306)
T ss_pred CceEEEeCCCCCCC----HHHHHHHHHhc--CceeEEEeeecc
Confidence 49999999998886 79999999998 557777776653
No 55
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=58.48 E-value=14 Score=40.92 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=30.8
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+++|.|.|||.+.. +++|++.|+++ |.|.++.++.+
T Consensus 2 s~vv~V~nLp~~~t----e~~L~~~f~~f--G~V~~v~i~~~ 37 (481)
T TIGR01649 2 SPVVHVRNLPQDVV----EADLVEALIPF--GPVSYVMMLPG 37 (481)
T ss_pred ccEEEEcCCCCCCC----HHHHHHHHHhc--CCeeEEEEECC
Confidence 47999999999876 79999999997 77988887764
No 56
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=57.15 E-value=21 Score=35.51 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=38.7
Q ss_pred ccccceEEEEecCHHHHHHHHHhcccCCC-----CceeeeeCCCCCCeeeCCcCcchHHHHHHHHHHH
Q 007784 174 EKQLGAALVFFTSRVAAASAAQSLHAQLV-----DTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVY 236 (590)
Q Consensus 174 ~~~~~~AFVtF~s~~~a~~a~q~~~~~~~-----~~~~v~~AP~P~DI~W~NL~~~~~~r~~R~~~~~ 236 (590)
....|+|||-|++..+|+.|...+|.++. ..+.|+.| -+.++|.+||.--.
T Consensus 57 g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A------------DTdkER~lRRMQQm 112 (371)
T KOG0146|consen 57 GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA------------DTDKERTLRRMQQM 112 (371)
T ss_pred CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec------------cchHHHHHHHHHHH
Confidence 35689999999999999999999998653 24566655 35678888886433
No 57
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=52.71 E-value=17 Score=27.29 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.5
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ 200 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~ 200 (590)
..+.|||+|++.++|+.|.+.++..
T Consensus 39 ~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 39 SKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCC
Confidence 4789999999999999999876554
No 58
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=50.71 E-value=46 Score=28.12 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=16.4
Q ss_pred CCCCCccccHHHHHHHHHHHHHHH
Q 007784 471 PAYESYGRMWPHMFLRLVAALLLY 494 (590)
Q Consensus 471 ~~~es~G~~~~~~~~~~~~~l~l~ 494 (590)
|....+|+-||.+...++.++.++
T Consensus 8 ~~~~~~g~sW~~LVGVv~~al~~S 31 (102)
T PF15176_consen 8 PGPGEGGRSWPFLVGVVVTALVTS 31 (102)
T ss_pred CCCCCCCcccHhHHHHHHHHHHHH
Confidence 556778999998776555555443
No 59
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=49.80 E-value=21 Score=40.44 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=30.7
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.++|.|.|||.+.. +++|+++|+.+ |.|.++.+.+|
T Consensus 204 ~~rLfVgnLp~~vt----eedLk~lFs~F--G~I~svrl~~D 239 (612)
T TIGR01645 204 FNRIYVASVHPDLS----ETDIKSVFEAF--GEIVKCQLARA 239 (612)
T ss_pred cceEEeecCCCCCC----HHHHHHHHhhc--CCeeEEEEEec
Confidence 46999999999886 68999999987 67888887765
No 60
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=48.35 E-value=25 Score=25.98 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=23.9
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
.+|-|+|.|++. .+.+.+||.++ |++.++.+.
T Consensus 2 ~wI~V~Gf~~~~-----~~~vl~~F~~f--GeI~~~~~~ 33 (53)
T PF14605_consen 2 TWISVSGFPPDL-----AEEVLEHFASF--GEIVDIYVP 33 (53)
T ss_pred cEEEEEeECchH-----HHHHHHHHHhc--CCEEEEEcC
Confidence 589999999865 46778899985 667665444
No 61
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=46.24 E-value=31 Score=38.04 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=31.7
Q ss_pred cccEEEEcCCCCC-CCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 52 QQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 52 s~yTVlV~~IP~~-~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
...+|+|.|||.+ .+ +++|++.|+++ |.|.+|.+.+|-
T Consensus 274 ~~~~l~v~nL~~~~vt----~~~L~~lF~~y--G~V~~vki~~~~ 312 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVN----CDRLFNLFCVY--GNVERVKFMKNK 312 (481)
T ss_pred CCCEEEEeCCCCCCCC----HHHHHHHHHhc--CCeEEEEEEeCC
Confidence 4579999999974 54 79999999987 789999888764
No 62
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=45.55 E-value=15 Score=41.76 Aligned_cols=40 Identities=8% Similarity=0.190 Sum_probs=33.6
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
...++|+.|.+||++++ +++|++.|+++ |+|.+|.+.-+.
T Consensus 418 sV~SrTLwvG~i~k~v~----e~dL~~~feef--GeiqSi~li~~R 457 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVT----EQDLANLFEEF--GEIQSIILIPPR 457 (894)
T ss_pred eEeeeeeeeccccchhh----HHHHHHHHHhc--ccceeEeeccCC
Confidence 35688999999999987 79999999998 778888777554
No 63
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=44.71 E-value=2.9e+02 Score=27.24 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=58.3
Q ss_pred CCHHHHHHhcCCCCCCCcccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhe---eeecCCCCCccccHHH
Q 007784 406 KTEAELKEAWFPGDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQAL---KVYVPAYESYGRMWPH 482 (590)
Q Consensus 406 ~T~re~~~~~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~ll---yvy~~~~es~G~~~~~ 482 (590)
++++++.|..+.+. .|. |+....++.+.+-|+.++-+...-......+....-|...+ ...+|+.+.-|+.+..
T Consensus 86 ~~~er~LeIMKDsr--iG~-~Gv~al~~~lllk~~~l~~l~~~~~~~~l~i~~~~~r~~~~~~~~~~~p~~~Glg~~f~~ 162 (235)
T PF02654_consen 86 RDRERRLEIMKDSR--IGA-FGVLALVLVLLLKYAALSSLPSHGLALALLIAPVLARLSMLLLAAFSKPRPEGLGALFVG 162 (235)
T ss_pred CCHHHHHHHHhCCC--CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhHHhc
Confidence 34444455555443 332 45555666666556555554433333334444455565443 2234555555655543
Q ss_pred HH--HHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 007784 483 MF--LRLVAALLLYQITMLGYFGSKKFIYVGFLIPLPILSLIFVYICQKRFY 532 (590)
Q Consensus 483 ~~--~~~~~~l~l~q~~~~g~f~lk~~~~~~~~~~l~~~t~~~~~~~~~~~~ 532 (590)
-. +++..+.++.=+..+.+.... .......+...+.+.++.+++++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~lG 213 (235)
T PF02654_consen 163 SAKKRQVLIALIILLLLALFLGGIP-WIGLLALLVALLLALLLARYARRRLG 213 (235)
T ss_pred cCChhHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 344445444322222111111 11122334445567778888888874
No 64
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=44.52 E-value=1.9e+02 Score=31.20 Aligned_cols=83 Identities=19% Similarity=0.408 Sum_probs=47.1
Q ss_pred CCCceeEEEEe-ccchh-HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCcccccccCCCCccccHHHHHHHHHHH
Q 007784 82 YPDTFYRSMVV-TNNKE-ANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKE 159 (590)
Q Consensus 82 ~p~~v~~v~~~-~d~~~-l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~rP~~~~~~~~~~g~kvd~i~~~~~~l~~ 159 (590)
||+. ....++ +|.++ +..+.++++++.++++....++.++ | ++-..+.-++++++.
T Consensus 227 f~d~-a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~----------~-----------k~~~k~~~~~~q~~~ 284 (406)
T PF02388_consen 227 FGDK-AKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKN----------P-----------KKKNKLKELEEQLAS 284 (406)
T ss_dssp CCCC-EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------T-----------HHHHHHHHHHHHHHH
T ss_pred cCCC-eEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------c-----------chhhHHHHHHHHHHH
Confidence 4666 334444 57755 4677777888888888877766532 1 011123445667777
Q ss_pred HHHHHHHHHhhh---hhc-cccceEEEEecC
Q 007784 160 IIPKLEAEQKIT---LKE-KQLGAALVFFTS 186 (590)
Q Consensus 160 l~~~I~~~~~~~---~~~-~~~~~AFVtF~s 186 (590)
++++|++.++-. .+. .-.+.-||.+.+
T Consensus 285 ~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~ 315 (406)
T PF02388_consen 285 LEKRIEEAEELIAEYGDEIPLAGALFIYYGD 315 (406)
T ss_dssp HHHHHHHHHHHHHHH-SEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHhcCCcceEEEEEEEEECC
Confidence 777776655422 111 235556676654
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=43.36 E-value=41 Score=33.72 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=25.0
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
..+.|||||+++.+|..|.. +... .+..+.|.+|+
T Consensus 42 ~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 42 RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 46899999999999999985 3322 23445666654
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=41.21 E-value=32 Score=33.90 Aligned_cols=36 Identities=33% Similarity=0.226 Sum_probs=26.9
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCCCC--ceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQLVD--TWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~~~--~~~v~~A 210 (590)
...|-|||||.++++|+.|...+....-+ .++|+.+
T Consensus 229 ~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 229 LSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred cccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 45789999999999999999887655433 3445543
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=40.05 E-value=27 Score=33.52 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.4
Q ss_pred ccccceEEEEecCHHHHHHHHHhcc
Q 007784 174 EKQLGAALVFFTSRVAAASAAQSLH 198 (590)
Q Consensus 174 ~~~~~~AFVtF~s~~~a~~a~q~~~ 198 (590)
.+.-|+|||.|++.+-|.+|+.+..
T Consensus 89 GNSKgYAFVEFEs~eVA~IaAETMN 113 (214)
T KOG4208|consen 89 GNSKGYAFVEFESEEVAKIAAETMN 113 (214)
T ss_pred CCcCceEEEEeccHHHHHHHHHHhh
Confidence 3567899999999999999998754
No 68
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=39.37 E-value=3.4e+02 Score=27.12 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHhc-CchHHHHHHHHhCCcchhHHHHHHHHHHhhhhhHHhhhHH
Q 007784 315 SHAVRAASGKYFYFTVLNVFIG-VTVGGTLFKTFKSIEK-DPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIV 392 (590)
Q Consensus 315 S~~~~s~~~k~f~f~~vn~~lv-~~l~~~~~~~l~~~~~-~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~~~llr~~ 392 (590)
|..|..+.-|......+...+. +.+.|++...++...+ ++.+..+.++.++|.--.+++-.++..-++..++-++=++
T Consensus 71 s~eqq~~ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~L~ivP 150 (248)
T PF06790_consen 71 SPEQQNVLLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFMLFIVP 150 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5666677777777666655555 3344555555555443 4557777888877765445544444443444555555455
Q ss_pred HHH
Q 007784 393 PLI 395 (590)
Q Consensus 393 ~l~ 395 (590)
++.
T Consensus 151 GI~ 153 (248)
T PF06790_consen 151 GII 153 (248)
T ss_pred HHH
Confidence 543
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=38.59 E-value=43 Score=35.69 Aligned_cols=43 Identities=7% Similarity=0.125 Sum_probs=34.5
Q ss_pred CCCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccch
Q 007784 49 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 96 (590)
Q Consensus 49 ~~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~ 96 (590)
....+++|.|+|||-+.+ =+.|++.+++.. ++|..|.+..|..
T Consensus 40 ~~~r~R~vfItNIpyd~r----WqdLKdLvrekv-Gev~yveLl~D~~ 82 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYR----WQDLKDLVREKV-GEVEYVELLFDES 82 (608)
T ss_pred cccccceEEEecCcchhh----hHhHHHHHHHhc-CceEeeeeecccC
Confidence 345678899999999987 478999998874 6788888888753
No 70
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=38.07 E-value=1.8e+02 Score=26.80 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=23.4
Q ss_pred eeCCCCCCe-eeCCcCcchHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007784 208 SDAPESREL-IWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIG 251 (590)
Q Consensus 208 ~~AP~P~DI-~W~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPv~ 251 (590)
..+|+|+|. .|.|=-++.---+--+.++.+++...+..+.-|--
T Consensus 32 fa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~ 76 (188)
T KOG4050|consen 32 FARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQD 76 (188)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHH
Confidence 468999998 67775554333333344444444443333444443
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=37.13 E-value=46 Score=32.36 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhh
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAI 81 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~ 81 (590)
-+|+.|.|+|.|.. ..+|...|+++
T Consensus 34 VRTLFVSGLP~DvK----pREiynLFR~f 58 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVK----PREIYNLFRRF 58 (284)
T ss_pred cceeeeccCCcccC----HHHHHHHhccC
Confidence 48999999999887 68888888775
No 72
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.55 E-value=1.4e+02 Score=30.71 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhheeeecCCC--CCccccHHHHHHHHHHHHHHHHHHHHHHHh
Q 007784 444 PLIIPFGVVYFALGWLILRNQALKVYVPAY--ESYGRMWPHMFLRLVAALLLYQITMLGYFG 503 (590)
Q Consensus 444 Plil~~~~~yf~~~y~v~Ky~llyvy~~~~--es~G~~~~~~~~~~~~~l~l~q~~~~g~f~ 503 (590)
|..+++|+++.++-+-+||+-+.-+.+... .-.+..+|+++--+++|+++++....-+|.
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvliaivIs~pl~l~iF~ 107 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIAIVISEPLELKIFE 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999887654322 111235556656667777777776665653
No 73
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=35.33 E-value=1e+02 Score=34.19 Aligned_cols=24 Identities=13% Similarity=0.436 Sum_probs=19.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Q 007784 145 KRVDAIEYYNEKIKEIIPKLEAEQ 168 (590)
Q Consensus 145 ~kvd~i~~~~~~l~~l~~~I~~~~ 168 (590)
+|-|..+|+...+++|+.+++..+
T Consensus 119 ek~d~~~wi~~~ideLe~q~d~~e 142 (575)
T KOG2150|consen 119 EKRDTMDWISNQIDELERQVDSFE 142 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999887643
No 74
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=35.20 E-value=1.2e+02 Score=23.32 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=28.6
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhh----CCCcee-----EEEEeccchh
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAI----YPDTFY-----RSMVVTNNKE 97 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~----~p~~v~-----~v~~~~d~~~ 97 (590)
-+|.|+|+.. +. .+++++||.++ .|.+|+ ++++++...+
T Consensus 6 eavhirGvd~-ls----T~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~ 53 (62)
T PF10309_consen 6 EAVHIRGVDE-LS----TDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEE 53 (62)
T ss_pred ceEEEEcCCC-CC----HHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHH
Confidence 5899999853 43 68999999999 455554 5688886543
No 75
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.86 E-value=3.8e+02 Score=25.72 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcc
Q 007784 512 FLIPLPILSLIFVYICQKRFY 532 (590)
Q Consensus 512 ~~~~l~~~t~~~~~~~~~~~~ 532 (590)
..+.+-++++...+|.+++|.
T Consensus 182 ~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 182 VYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344445556677888888874
No 76
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=33.75 E-value=52 Score=31.25 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHhhccccccccchHHHhh
Q 007784 486 RLVAALLLYQITMLGYFGSKKFIYVGFLIPLPILSLIFVYICQKRFYKSFSDTALEVASR 545 (590)
Q Consensus 486 ~~~~~l~l~q~~~~g~f~lk~~~~~~~~~~l~~~t~~~~~~~~~~~~~~~~~~pl~~~~~ 545 (590)
..++|+++|-..+-|+|..|+-++-.+++.+..++.+-=.+.-.+..|+.++.|.....+
T Consensus 8 ~a~~~~l~F~aatqg~f~~r~~~~E~~~ll~~~f~lf~P~~~~d~i~ppy~~~p~~~~~~ 67 (183)
T PF11874_consen 8 TALIAMLAFAAATQGWFLTRNKWWESVLLLLIAFTLFRPGFWMDMIYPPYEEVPPSELVQ 67 (183)
T ss_pred HHHHHHHHHHHHhcceeeecchHHHHHHHHHHHHHHhCchHHHHhccCccccCCHHHHHH
Confidence 456778888888889998888777666666677777777777888889999998776553
No 77
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.21 E-value=58 Score=31.01 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=26.7
Q ss_pred CCCcccchhHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhh
Q 007784 420 LGYGTRVPSDMLIVTIVFCYSCI-APLIIPFGVVYFALGWLILRNQ 464 (590)
Q Consensus 420 f~~~~~y~~~l~~~~i~l~Ys~i-~Plil~~~~~yf~~~y~v~Ky~ 464 (590)
.|+.+.=.+...++.+.++||.+ .|+.+.+-...++..++.|++.
T Consensus 64 ~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~LY~~r 109 (187)
T KOG3142|consen 64 RNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLFLYFLR 109 (187)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHheeeec
Confidence 34444445666677777777766 5666666555555555554443
No 78
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=31.95 E-value=82 Score=34.79 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=26.6
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 210 (590)
+..|.|||+|.+..+|..|.+.+.... ...+.|..|
T Consensus 335 ~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 335 LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457899999999999999998875443 234555544
No 79
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=31.91 E-value=1.9e+02 Score=27.83 Aligned_cols=96 Identities=18% Similarity=0.299 Sum_probs=51.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCCCCccccHHHHHHHHHHHHHHHHH-HHHHHHhhccc---ch-hh
Q 007784 437 FCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQI-TMLGYFGSKKF---IY-VG 511 (590)
Q Consensus 437 l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~es~G~~~~~~~~~~~~~l~l~q~-~~~g~f~lk~~---~~-~~ 511 (590)
.++..-.|+.++.+++||+...++-+.|.=..++. .+.+....|+-+.-+ +..|...+++. .. ..
T Consensus 50 ~v~~~~~~~~i~~~i~yf~yLrYiL~~~~~f~id~----------epYR~FY~~Isli~~l~~~gyvlvr~~s~~~~~y~ 119 (206)
T PF09874_consen 50 YVFFISPLILIPLFIFYFIYLRYILIRNRNFMIDF----------EPYRFFYYGISLIGFLSFLGYVLVRRFSFEVYPYY 119 (206)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhccceeEech----------hHHHHHHHHHhhhhheeecchhhheeccchhhhHH
Confidence 34444566777778888887766655555444432 122333333332222 22344444443 11 22
Q ss_pred -hhHHHHHHHHHHHHHHHhhccccccccchHH
Q 007784 512 -FLIPLPILSLIFVYICQKRFYKSFSDTALEV 542 (590)
Q Consensus 512 -~~~~l~~~t~~~~~~~~~~~~~~~~~~pl~~ 542 (590)
.++...+..+.|.++.+.+|.|.+-+--.++
T Consensus 120 ~yL~~v~laVl~fr~~Fr~ky~RdyTyG~VeE 151 (206)
T PF09874_consen 120 TYLGFVFLAVLAFRYYFRSKYGRDYTYGVVEE 151 (206)
T ss_pred HHHHHHHHHHHHHhhheeeeecccceeEEEEE
Confidence 2222333456688899999999887765543
No 80
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=31.88 E-value=60 Score=33.00 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=31.6
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
-.|++|--|+-++. +.+|++.|+.+ |.|.++.+|+|
T Consensus 101 y~TLFv~RLnydT~----EskLrreF~~Y--G~IkrirlV~d 136 (335)
T KOG0113|consen 101 YKTLFVARLNYDTS----ESKLRREFEKY--GPIKRIRLVRD 136 (335)
T ss_pred cceeeeeecccccc----HHHHHHHHHhc--CcceeEEEeee
Confidence 45999999998765 79999999998 67999999998
No 81
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.61 E-value=71 Score=25.14 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=27.0
Q ss_pred ceEEEEecCHHHHHHHHHhcccCCCCceeeeeCCCCCCe
Q 007784 178 GAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESREL 216 (590)
Q Consensus 178 ~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP~P~DI 216 (590)
....|||+|..+|-.+-+.+.+.+ ..++..|-|++|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~g---i~~~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNG---IPVRLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCC---CcEEEeCCChhc
Confidence 467899999999998887765544 345566778776
No 82
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=30.50 E-value=1.2e+02 Score=27.34 Aligned_cols=39 Identities=8% Similarity=0.183 Sum_probs=31.1
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
..-+-|+|+||-++.. ++++.+-|..+ |.|.++++..|-
T Consensus 70 VEGwIi~VtgvHeEat----Eedi~d~F~dy--GeiKNihLNLDR 108 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEAT----EEDIHDKFADY--GEIKNIHLNLDR 108 (170)
T ss_pred eeeEEEEEeccCcchh----HHHHHHHHhhc--ccccceeecccc
Confidence 3456789999988776 68999999988 678888877663
No 83
>COG5570 Uncharacterized small protein [Function unknown]
Probab=30.35 E-value=2.3e+02 Score=20.98 Aligned_cols=21 Identities=5% Similarity=0.143 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 007784 96 KEANKIYEELEGYKKKLARAE 116 (590)
Q Consensus 96 ~~l~~L~~~r~~~~~~Le~~~ 116 (590)
..|..|.+++..+.+++.++.
T Consensus 5 shl~eL~kkHg~le~ei~ea~ 25 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAM 25 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHh
Confidence 356778888888888777764
No 84
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=30.26 E-value=94 Score=25.63 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=24.0
Q ss_pred ccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeCCCCCCe
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESREL 216 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DI 216 (590)
..++|.+-|.+++.|..|..-..... ..+..|...|.+.|.
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNREF 80 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S---
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcccc
Confidence 46899999999999999887665443 345666667766554
No 85
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=30.12 E-value=98 Score=29.11 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=34.2
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchh
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKE 97 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~ 97 (590)
+.+.-|.|-|+|.+.+ +.+|+.-|..+ |.+.+||++++-..
T Consensus 8 ~~~~kVYVGnL~~~a~----k~eLE~~F~~y--G~lrsvWvArnPPG 48 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRAT----KRELERAFSKY--GPLRSVWVARNPPG 48 (195)
T ss_pred CCCceEEeccCCCCcc----hHHHHHHHHhc--CcceeEEEeecCCC
Confidence 3467899999999887 68999999988 67899999997654
No 86
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=29.73 E-value=49 Score=28.32 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.0
Q ss_pred cccceEEEEecCHHHHHHHHHhcc
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLH 198 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~ 198 (590)
...|+|||..++..+|..|+..+.
T Consensus 55 ~TrGTAFVVYedi~dAk~A~dhls 78 (124)
T KOG0114|consen 55 ETRGTAFVVYEDIFDAKKACDHLS 78 (124)
T ss_pred CcCceEEEEehHhhhHHHHHHHhc
Confidence 357999999999999999998764
No 87
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=29.19 E-value=54 Score=35.01 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.6
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQL 201 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~ 201 (590)
...|++||+|.+.++|..|...+|..+
T Consensus 74 ~s~gcCFv~~~trk~a~~a~~Alhn~k 100 (510)
T KOG0144|consen 74 QSKGCCFVKYYTRKEADEAINALHNQK 100 (510)
T ss_pred cccceEEEEeccHHHHHHHHHHhhccc
Confidence 568999999999999999998887653
No 88
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=28.67 E-value=63 Score=33.43 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=32.3
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchh
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKE 97 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~ 97 (590)
..|.|.+||.+.. ++++++||+++ +.|..+.+.+|...
T Consensus 98 kkiFvGG~~~~~~----e~~~r~yfe~~--g~v~~~~~~~d~~~ 135 (311)
T KOG4205|consen 98 KKIFVGGLPPDTT----EEDFKDYFEQF--GKVADVVIMYDKTT 135 (311)
T ss_pred eEEEecCcCCCCc----hHHHhhhhhcc--ceeEeeEEeecccc
Confidence 4799999999887 69999999997 57888888888754
No 89
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=28.45 E-value=62 Score=30.56 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=25.9
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEE
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 89 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v 89 (590)
.+.+|.|-|+|.+++ +.++++.|.++ +.|..|
T Consensus 5 ~~~~iyvGNLP~diR----ekeieDlFyKy--g~i~~i 36 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIR----EKEIEDLFYKY--GRIREI 36 (241)
T ss_pred ccceEEecCCCcchh----hccHHHHHhhh--cceEEE
Confidence 468999999999998 58899999987 445544
No 90
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=26.98 E-value=3.6e+02 Score=25.16 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=31.2
Q ss_pred HHHHHHHhhheeeecCCCCCccccHHH---------HHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHH
Q 007784 456 LGWLILRNQALKVYVPAYESYGRMWPH---------MFLRLVAALLLYQITMLGYFGSKKFIYVGFLIPLP 517 (590)
Q Consensus 456 ~~y~v~Ky~llyvy~~~~es~G~~~~~---------~~~~~~~~l~l~q~~~~g~f~lk~~~~~~~~~~l~ 517 (590)
+.+++--|.+-+.-+|.|+.+|.+-.. +..++.--+++.=++.++...-..++...+++|+-
T Consensus 56 ~~~~~~~~~l~~~~rp~~~~~g~Lv~~G~DL~~~G~l~ey~~Diiylt~~vq~l~~~s~~~w~l~LvIP~y 126 (170)
T PF05620_consen 56 LPAIFCYYFLEKMARPKYDETGELVDAGEDLNQPGGLTEYMFDIIYLTWFVQVLSIISNKFWWLYLVIPGY 126 (170)
T ss_pred HHHHHHHHHHHHhCCCCcCCCCCeecCcccccCCcchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445566778888855543222 45555555555555555443333334444445543
No 91
>COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=26.93 E-value=7e+02 Score=25.56 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=48.8
Q ss_pred CCCCcccchhHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeecCCCCCccccHHHHHHHHHHHHHHHHH
Q 007784 419 DLGYGTRVPSDMLI--VTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQI 496 (590)
Q Consensus 419 ~f~~~~~y~~~l~~--~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~llyvy~~~~es~G~~~~~~~~~~~~~l~l~q~ 496 (590)
..+.|..|...... ..+++.=|+-.-++-|..++++.+.-+.|- +..-|+.+| ..|.+.---..+++-.|.
T Consensus 210 AinLGi~y~k~~~~lL~ivavLvsvSTALVGPitFlGlLvanLay~--~~~tykH~~-----ll~~~ili~~i~L~ggQ~ 282 (316)
T COG4605 210 AINLGIDYEKVTKILLLIVAVLVSVSTALVGPITFLGLLVANLAYE--FSKTYKHSY-----LLPAAILIGVIALVGGQF 282 (316)
T ss_pred HhhcCcchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH--Hhcccceee-----hhHHHHHHHHHHHHhhHH
Confidence 35667777654443 345556677788999999999999877654 344444443 445555455555655565
Q ss_pred HHHHHHhhc
Q 007784 497 TMLGYFGSK 505 (590)
Q Consensus 497 ~~~g~f~lk 505 (590)
.+==+|..+
T Consensus 283 vve~Vf~~~ 291 (316)
T COG4605 283 VVERVFAFQ 291 (316)
T ss_pred HHHHHHhcC
Confidence 554444433
No 92
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=26.55 E-value=2.2e+02 Score=25.79 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhh
Q 007784 428 SDMLIVTIVFCYSCI-APLIIPFGVVYFALGWLILRNQ 464 (590)
Q Consensus 428 ~~l~~~~i~l~Ys~i-~Plil~~~~~yf~~~y~v~Ky~ 464 (590)
+...++++.++++.+ .|..++..++.....+++++.+
T Consensus 43 NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~ 80 (153)
T PF03208_consen 43 NYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSR 80 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444444444443 6876666666666655555443
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=25.99 E-value=1.1e+02 Score=30.47 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=17.5
Q ss_pred cccceEEEEecCHHHHHHHHH
Q 007784 175 KQLGAALVFFTSRVAAASAAQ 195 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q 195 (590)
...+.|||+|+++.++..|..
T Consensus 42 et~gfAfVtF~d~~aaetAll 62 (243)
T PLN03121 42 EYACTAYVTFKDAYALETAVL 62 (243)
T ss_pred CcceEEEEEECCHHHHHHHHh
Confidence 345799999999999988873
No 94
>PRK11020 hypothetical protein; Provisional
Probab=25.84 E-value=2.7e+02 Score=24.11 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHh
Q 007784 96 KEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQK 169 (590)
Q Consensus 96 ~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~ 169 (590)
.+|..|.++.+++.+++..+..+ | ..+-+..+++|++.++.+|+..+.
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~r-------------------------g-d~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLR-------------------------G-DAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------------------------C-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666777776666665431 1 112345567777888887776543
No 95
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=25.09 E-value=64 Score=33.24 Aligned_cols=50 Identities=20% Similarity=0.174 Sum_probs=34.2
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCCC--Cceee----------eeCCCCCCeeeCCcCcc
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTV----------SDAPESRELIWNNLNIK 224 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~~--~~~~v----------~~AP~P~DI~W~NL~~~ 224 (590)
...|-+||||++..+|..|.+.+|.... .+..| +.-|-|.-.-|.++...
T Consensus 134 GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~~~g~~~~~a~ 195 (376)
T KOG0125|consen 134 GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKVLPYPNGWKLLPAV 195 (376)
T ss_pred CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcccCCCccccccccch
Confidence 3578899999999999999999886421 11111 22345555668877654
No 96
>PLN03213 repressor of silencing 3; Provisional
Probab=24.89 E-value=1.1e+02 Score=33.22 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=32.9
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.+-.+|.|-||+.++. ++.|++.|.++ |+|.+|.++++
T Consensus 8 ~~gMRIYVGNLSydVT----EDDLravFSeF--GsVkdVEIpRE 45 (759)
T PLN03213 8 GGGVRLHVGGLGESVG----RDDLLKIFSPM--GTVDAVEFVRT 45 (759)
T ss_pred CcceEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEecc
Confidence 3457999999999887 69999999998 88999998864
No 97
>PF15159 PIG-Y: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Probab=24.81 E-value=66 Score=25.60 Aligned_cols=26 Identities=31% Similarity=0.738 Sum_probs=23.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHh
Q 007784 438 CYSCIAPLIIPFGVVYFALGWLILRN 463 (590)
Q Consensus 438 ~Ys~i~Plil~~~~~yf~~~y~v~Ky 463 (590)
-|+.+.|+.+|...++-...|+.+|+
T Consensus 43 yY~lLvPl~iPv~~~~vy~nWls~k~ 68 (72)
T PF15159_consen 43 YYCLLVPLTIPVTIVFVYFNWLSWKF 68 (72)
T ss_pred ceeeehhhhhhHHHHHHHHHHHhHHH
Confidence 57999999999999999999998886
No 98
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=24.59 E-value=78 Score=26.77 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.0
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ 200 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~ 200 (590)
...|.|||.|.+.++|....+..+..
T Consensus 43 ~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 43 CNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 35899999999999999988877643
No 99
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=24.32 E-value=1.3e+02 Score=28.52 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCcccEEEEcCCCCCCCCCChHHHHHHHHhhh
Q 007784 49 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 81 (590)
Q Consensus 49 ~~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~ 81 (590)
.+-|+|-|+|+++|.+-. =+.|++|+.+.
T Consensus 111 srrSe~RVvVsGLp~SgS----WQDLKDHmRea 139 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGS----WQDLKDHMREA 139 (241)
T ss_pred ccccceeEEEecCCCCCc----hHHHHHHHHhh
Confidence 456889999999998754 58899999986
No 100
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=24.23 E-value=69 Score=30.28 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=32.6
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
+.+|-||.|.|||...+ ++.|.+.|-+. |.|+++++.+|.
T Consensus 6 rnqd~tiyvgnld~kvs----~~~l~EL~iqa--gpVv~i~iPkDr 45 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVS----EELLYELFIQA--GPVVNLHIPKDR 45 (203)
T ss_pred cCCCceEEEecCCHHHH----HHHHHHHHHhc--Cceeeeecchhh
Confidence 56789999999998776 68899999887 558888887763
No 101
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.06 E-value=1.3e+02 Score=27.40 Aligned_cols=60 Identities=10% Similarity=0.170 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHH
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLAR 114 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~ 114 (590)
-||--+|+--++.+-...+.|+.+.+++|+|+ ..+.++.|..+-+.+.+.|+++-+-+.+
T Consensus 54 etVtykN~kfNvwdvGGqd~iRplWrhYy~gt-qglIFV~Dsa~~dr~eeAr~ELh~ii~~ 113 (180)
T KOG0071|consen 54 ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT-QGLIFVVDSADRDRIEEARNELHRIIND 113 (180)
T ss_pred EEEEeeeeEEeeeeccCchhhhHHHHhhccCC-ceEEEEEeccchhhHHHHHHHHHHHhCC
Confidence 36666777655554444788999999999985 5677888887767777777766554443
No 102
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=23.96 E-value=79 Score=32.85 Aligned_cols=45 Identities=22% Similarity=0.092 Sum_probs=31.5
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC---CCCceeeeeCCCCCCeeeCCcCcc
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ---LVDTWTVSDAPESRELIWNNLNIK 224 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~---~~~~~~v~~AP~P~DI~W~NL~~~ 224 (590)
...++|||+|.+..+|..|+....+. +..++.+..++. |.....+
T Consensus 262 ~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~-----~~~a~~g 309 (377)
T KOG0153|consen 262 PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP-----KQAAQGG 309 (377)
T ss_pred cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC-----cccccCC
Confidence 45679999999999999998765442 345566666654 5544444
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=23.77 E-value=76 Score=34.47 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=31.8
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
++|.|.|||.+.. +++|.+.|.+. |.|.++.+++|-
T Consensus 19 ~~v~vgnip~~~s----e~~l~~~~~~~--g~v~s~~~v~D~ 54 (435)
T KOG0108|consen 19 SSVFVGNIPYEGS----EEQLLSIFSGV--GPVLSFRLVYDR 54 (435)
T ss_pred cceEecCCCCccc----HHHHHHHHhcc--Cccceeeecccc
Confidence 8999999999886 69999999987 678899988874
No 104
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.57 E-value=4.9e+02 Score=28.52 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 007784 432 IVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQ 464 (590)
Q Consensus 432 ~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~ 464 (590)
..-.+++|+.+.|++..|++==|++.=+--|.+
T Consensus 372 ~~p~avfya~v~P~~s~F~l~k~v~rP~~~~~k 404 (546)
T KOG0718|consen 372 LLPSAVFYALVFPITSYFGLKKFVLRPYLLKRK 404 (546)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHeecHHHHhhH
Confidence 445667888888888777666665554444433
No 105
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=22.25 E-value=2.9e+02 Score=28.50 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCH
Q 007784 149 AIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSR 187 (590)
Q Consensus 149 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~ 187 (590)
.++..+++++.++++|+..|+++.+-+.+..|.+.|.+.
T Consensus 44 Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi~vfs~a 82 (297)
T PF11945_consen 44 RVERNRERLQAIQQRIEVAQAKIEKLQGSKKAITVFSPA 82 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccEEEeCcc
Confidence 356677888888888888888776666778899999875
No 106
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.53 E-value=1.2e+02 Score=21.78 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 007784 152 YYNEKIKEIIPKLEAEQKI 170 (590)
Q Consensus 152 ~~~~~l~~l~~~I~~~~~~ 170 (590)
+.+++++.++++|.+++++
T Consensus 16 ~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHH
Confidence 3457888888888876654
No 107
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=21.21 E-value=7.4e+02 Score=26.34 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=40.2
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007784 283 EAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGG 341 (590)
Q Consensus 283 ~~~lp~l~l~i~n~llp~ii~~ls~~e~~~s~S~~~~s~~~k~f~f~~vn~~lv~~l~~ 341 (590)
..+..+++..++..++-.+.-++++.+|.......+.....+.--.-+-+.++..++.|
T Consensus 206 ~A~~~Ti~~~~ls~il~~~~i~~~~l~G~~~E~~~~l~~~~~~v~i~~~~~~~~~viIg 264 (385)
T COG5438 206 AAFIGTILGTLLSIILAYISIYMTNLSGFGDEDLDELTYLSKNVGINFSGLFLAGVIIG 264 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhHHHhcCCcccCcchhhhHHHHHHHH
Confidence 34445566666777788888999999999888887777766664444444555544443
No 108
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=20.63 E-value=1.8e+02 Score=31.18 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=30.0
Q ss_pred hccccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCC
Q 007784 173 KEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 212 (590)
Q Consensus 173 ~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 212 (590)
+.|..++|.|.|++++.++.|+..+... +...+.|++-|+
T Consensus 82 ~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 82 SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 4578999999999999999999887543 334455655543
Done!