Query 007784
Match_columns 590
No_of_seqs 221 out of 923
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 10:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 97.3 0.0013 4.5E-08 54.7 9.7 37 52-94 18-54 (99)
2 2dnz_A Probable RNA-binding pr 97.3 0.0027 9.4E-08 51.9 11.2 82 51-214 3-86 (95)
3 2jrs_A RNA-binding protein 39; 97.2 0.0027 9.3E-08 53.6 10.7 84 50-215 23-108 (108)
4 3bs9_A Nucleolysin TIA-1 isofo 97.2 0.0019 6.6E-08 51.8 9.2 38 51-94 4-41 (87)
5 1fxl_A Paraneoplastic encephal 97.2 0.00079 2.7E-08 60.9 7.6 38 52-95 1-38 (167)
6 3md1_A Nuclear and cytoplasmic 97.1 0.0032 1.1E-07 50.0 9.9 35 54-94 2-36 (83)
7 3s8s_A Histone-lysine N-methyl 97.1 0.0029 1E-07 53.7 9.9 79 51-211 4-84 (110)
8 2lxi_A RNA-binding protein 10; 97.1 0.0011 3.8E-08 54.2 6.7 31 54-89 2-32 (91)
9 4a8x_A RNA-binding protein wit 97.0 0.0024 8.3E-08 51.3 8.7 36 52-93 3-38 (88)
10 1x5s_A Cold-inducible RNA-bind 97.0 0.0041 1.4E-07 51.6 10.3 38 50-93 9-46 (102)
11 1x5u_A Splicing factor 3B subu 97.0 0.0055 1.9E-07 51.1 11.1 82 50-213 12-95 (105)
12 3mdf_A Peptidyl-prolyl CIS-tra 97.0 0.0032 1.1E-07 50.3 9.2 37 51-93 5-41 (85)
13 2dgs_A DAZ-associated protein 97.0 0.0064 2.2E-07 50.1 11.3 38 50-93 7-44 (99)
14 2dgp_A Bruno-like 4, RNA bindi 97.0 0.0051 1.7E-07 51.4 10.6 38 50-93 10-47 (106)
15 2dgv_A HnRNP M, heterogeneous 97.0 0.0057 1.9E-07 49.6 10.6 37 50-92 5-41 (92)
16 3p5t_L Cleavage and polyadenyl 97.0 0.0017 5.8E-08 52.8 7.2 81 54-214 2-84 (90)
17 2dnp_A RNA-binding protein 14; 97.0 0.0065 2.2E-07 49.1 10.7 36 50-91 6-41 (90)
18 2cph_A RNA binding motif prote 97.0 0.006 2E-07 51.0 10.7 38 50-93 12-49 (107)
19 2do4_A Squamous cell carcinoma 97.0 0.006 2.1E-07 50.4 10.5 38 50-93 14-51 (100)
20 1whw_A Hypothetical protein ri 96.9 0.0055 1.9E-07 50.5 10.2 82 51-214 6-89 (99)
21 2e5h_A Zinc finger CCHC-type a 96.9 0.0042 1.4E-07 50.6 9.4 39 49-93 12-50 (94)
22 1b7f_A Protein (SXL-lethal pro 96.9 0.0036 1.2E-07 56.6 9.8 38 52-95 2-39 (168)
23 2cpz_A CUG triplet repeat RNA- 96.9 0.0051 1.7E-07 52.3 10.2 38 50-93 22-59 (115)
24 2cq3_A RNA-binding protein 9; 96.9 0.01 3.6E-07 49.2 11.7 38 50-93 12-49 (103)
25 2dgo_A Cytotoxic granule-assoc 96.9 0.009 3.1E-07 50.7 11.4 39 50-94 12-50 (115)
26 2dnh_A Bruno-like 5, RNA bindi 96.9 0.0099 3.4E-07 49.5 11.3 37 51-93 13-49 (105)
27 2x1f_A MRNA 3'-END-processing 96.9 0.0061 2.1E-07 50.0 9.7 79 53-213 2-82 (96)
28 4f25_A Polyadenylate-binding p 96.9 0.0062 2.1E-07 51.9 10.1 35 53-93 5-39 (115)
29 1x4c_A Splicing factor, argini 96.8 0.0078 2.7E-07 50.6 10.5 34 51-90 13-46 (108)
30 2dgt_A RNA-binding protein 30; 96.8 0.0077 2.6E-07 48.9 10.1 36 49-90 6-41 (92)
31 2cqi_A Nucleolysin TIAR; RNA r 96.8 0.012 4.1E-07 48.8 11.4 38 50-93 12-49 (103)
32 2lkz_A RNA-binding protein 5; 96.8 0.0028 9.5E-08 52.4 7.2 37 50-90 6-42 (95)
33 1x5t_A Splicing factor 3B subu 96.8 0.0051 1.7E-07 50.3 8.8 37 176-212 47-85 (96)
34 1p27_B RNA-binding protein 8A; 96.8 0.0096 3.3E-07 49.6 10.7 39 50-94 20-58 (106)
35 2dnq_A RNA-binding protein 4B; 96.8 0.011 3.9E-07 47.7 10.8 35 50-90 5-39 (90)
36 2diu_A KIAA0430 protein; struc 96.8 0.0043 1.5E-07 50.9 7.9 40 178-217 47-88 (96)
37 2cqg_A TDP-43, TAR DNA-binding 96.8 0.0086 2.9E-07 49.7 10.1 38 51-94 13-50 (103)
38 2div_A TRNA selenocysteine ass 96.8 0.012 4E-07 48.4 10.7 38 50-93 6-44 (99)
39 2fy1_A RNA-binding motif prote 96.7 0.011 3.7E-07 50.6 10.7 36 52-93 6-41 (116)
40 2d9p_A Polyadenylate-binding p 96.7 0.009 3.1E-07 49.6 9.9 38 50-93 12-49 (103)
41 2dnm_A SRP46 splicing factor; 96.7 0.0091 3.1E-07 49.6 9.7 37 50-92 10-46 (103)
42 1x4h_A RNA-binding protein 28; 96.7 0.012 4E-07 49.5 10.4 37 51-93 13-49 (111)
43 2dhg_A TRNA selenocysteine ass 96.7 0.013 4.5E-07 48.6 10.6 39 50-93 6-44 (104)
44 1wf1_A RNA-binding protein RAL 96.7 0.009 3.1E-07 50.3 9.6 37 177-213 62-100 (110)
45 2cq0_A Eukaryotic translation 96.7 0.0092 3.2E-07 49.5 9.5 38 50-93 12-49 (103)
46 1oo0_B CG8781-PA, drosophila Y 96.7 0.011 3.9E-07 49.6 10.1 38 49-92 22-59 (110)
47 1x4g_A Nucleolysin TIAR; struc 96.7 0.015 5.1E-07 48.9 10.8 34 51-90 23-56 (109)
48 2dgu_A Heterogeneous nuclear r 96.7 0.013 4.5E-07 48.6 10.4 34 51-90 9-42 (103)
49 2cpd_A Apobec-1 stimulating pr 96.6 0.017 5.8E-07 47.5 10.9 36 50-89 12-47 (99)
50 1wi8_A EIF-4B, eukaryotic tran 96.6 0.012 4.1E-07 49.0 10.0 37 50-93 12-48 (104)
51 3ex7_B RNA-binding protein 8A; 96.6 0.011 3.9E-07 50.9 10.2 39 49-93 18-56 (126)
52 1h2v_Z 20 kDa nuclear CAP bind 96.6 0.013 4.4E-07 52.8 10.8 38 51-94 37-74 (156)
53 3nmr_A Cugbp ELAV-like family 96.6 0.013 4.6E-07 53.1 11.0 103 52-234 2-116 (175)
54 3md3_A Nuclear and cytoplasmic 96.6 0.0043 1.5E-07 55.8 7.4 36 54-95 1-36 (166)
55 1p1t_A Cleavage stimulation fa 96.6 0.0067 2.3E-07 50.4 8.1 80 52-213 7-88 (104)
56 2la6_A RNA-binding protein FUS 96.6 0.016 5.6E-07 47.6 10.3 33 50-88 10-42 (99)
57 2cqb_A Peptidyl-prolyl CIS-tra 96.5 0.0074 2.5E-07 50.0 8.1 36 50-91 9-44 (102)
58 2cpj_A Non-POU domain-containi 96.5 0.014 4.6E-07 48.1 9.7 37 178-214 52-90 (99)
59 1x4a_A Splicing factor, argini 96.5 0.029 9.9E-07 47.0 11.4 34 51-90 20-53 (109)
60 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.4 0.014 5E-07 51.1 9.8 36 51-92 61-96 (140)
61 2cqp_A RNA-binding protein 12; 96.4 0.0074 2.5E-07 49.6 7.1 39 176-214 56-96 (98)
62 3lqv_A PRE-mRNA branch site pr 96.4 0.023 7.8E-07 48.1 10.3 95 51-232 6-102 (115)
63 3beg_B Splicing factor, argini 96.4 0.012 4.2E-07 50.1 8.5 34 51-90 14-47 (115)
64 2jvo_A Nucleolar protein 3; nu 96.4 0.018 6.3E-07 48.4 9.5 33 51-89 29-61 (108)
65 2kt5_A RNA and export factor-b 96.3 0.024 8.1E-07 48.8 10.4 37 51-93 33-69 (124)
66 2kxn_B Transformer-2 protein h 96.3 0.018 6.2E-07 50.2 9.6 38 51-94 44-81 (129)
67 2cpe_A RNA-binding protein EWS 96.3 0.02 6.7E-07 48.4 9.4 37 175-211 63-101 (113)
68 1u6f_A Tcubp1, RNA-binding pro 96.3 0.031 1.1E-06 49.0 11.0 36 52-93 41-76 (139)
69 3ns6_A Eukaryotic translation 96.2 0.0097 3.3E-07 49.3 7.0 35 176-210 53-90 (100)
70 2kvi_A Nuclear polyadenylated 96.2 0.019 6.5E-07 47.0 8.5 35 50-90 7-42 (96)
71 2xnq_A Nuclear polyadenylated 96.2 0.039 1.3E-06 45.3 10.5 35 50-90 19-54 (97)
72 2ek1_A RNA-binding protein 12; 96.1 0.0083 2.8E-07 48.9 5.9 27 51-81 13-39 (95)
73 2ki2_A SS-DNA binding protein 96.1 0.0089 3E-07 48.2 5.9 34 54-93 2-35 (90)
74 2a3j_A U1 small nuclear ribonu 96.1 0.022 7.7E-07 49.5 8.8 43 177-219 72-116 (127)
75 4f02_A Polyadenylate-binding p 96.1 0.04 1.4E-06 52.2 11.4 99 53-233 15-123 (213)
76 2j76_E EIF-4B, EIF4B, eukaryot 96.0 0.016 5.5E-07 47.9 7.5 37 50-93 16-52 (100)
77 2dis_A Unnamed protein product 96.0 0.043 1.5E-06 45.8 10.2 36 51-91 6-41 (109)
78 1l3k_A Heterogeneous nuclear r 96.0 0.052 1.8E-06 50.1 11.6 39 50-94 10-48 (196)
79 2f3j_A RNA and export factor b 96.0 0.025 8.7E-07 52.2 9.1 83 52-217 87-171 (177)
80 2la4_A Nuclear and cytoplasmic 95.9 0.033 1.1E-06 45.9 8.9 33 51-89 25-57 (101)
81 2qfj_A FBP-interacting repress 95.9 0.054 1.8E-06 50.9 11.5 36 52-93 27-62 (216)
82 1whx_A Hypothetical protein ri 95.9 0.025 8.7E-07 47.8 8.2 34 51-90 8-41 (111)
83 2i2y_A Fusion protein consists 95.9 0.059 2E-06 47.9 11.1 35 51-91 71-105 (150)
84 2dnl_A Cytoplasmic polyadenyla 95.9 0.014 4.8E-07 49.6 6.5 31 51-87 6-36 (114)
85 3n9u_C Cleavage and polyadenyl 95.9 0.038 1.3E-06 49.9 9.7 39 52-94 54-92 (156)
86 1nu4_A U1A RNA binding domain; 95.9 0.039 1.3E-06 44.9 9.1 40 177-216 51-92 (97)
87 2kn4_A Immunoglobulin G-bindin 95.9 0.044 1.5E-06 49.1 10.2 37 51-93 68-104 (158)
88 2lea_A Serine/arginine-rich sp 95.9 0.026 9E-07 49.5 8.3 36 51-92 45-80 (135)
89 1wg1_A KIAA1579 protein, homol 95.9 0.016 5.6E-07 46.5 6.5 38 177-214 40-79 (88)
90 3sde_A Paraspeckle component 1 95.7 0.07 2.4E-06 52.2 11.7 56 178-233 59-116 (261)
91 2jvr_A Nucleolar protein 3; RN 95.6 0.045 1.5E-06 46.4 8.6 36 177-212 67-104 (111)
92 2g4b_A Splicing factor U2AF 65 95.6 0.019 6.4E-07 52.0 6.6 39 52-94 3-50 (172)
93 2e5j_A Methenyltetrahydrofolat 95.5 0.094 3.2E-06 42.8 9.8 38 176-213 55-94 (97)
94 2fc8_A NCL protein; structure 95.4 0.063 2.1E-06 44.2 8.6 38 176-213 53-92 (102)
95 3smz_A Protein raver-1, ribonu 95.4 0.078 2.7E-06 52.3 10.9 58 177-234 57-116 (284)
96 2qfj_A FBP-interacting repress 95.4 0.078 2.7E-06 49.8 10.3 36 53-94 125-160 (216)
97 1qm9_A Polypyrimidine tract-bi 95.3 0.014 4.9E-07 54.4 4.8 38 52-95 2-40 (198)
98 3nmr_A Cugbp ELAV-like family 95.2 0.11 3.9E-06 46.7 10.6 36 52-93 94-129 (175)
99 2nlw_A Eukaryotic translation 95.1 0.1 3.5E-06 43.3 9.0 37 177-213 61-100 (105)
100 3q2s_C Cleavage and polyadenyl 95.1 0.063 2.2E-06 51.7 8.8 39 52-94 67-105 (229)
101 1fj7_A Nucleolin RBD1, protein 95.1 0.039 1.3E-06 45.4 6.3 36 175-211 56-93 (101)
102 2cpx_A Hypothetical protein FL 95.1 0.048 1.6E-06 46.0 7.0 37 175-211 65-103 (115)
103 2cqh_A IGF-II mRNA-binding pro 95.0 0.076 2.6E-06 42.9 7.8 36 177-212 44-82 (93)
104 3s7r_A Heterogeneous nuclear r 94.0 0.084 2.9E-06 42.0 5.7 40 50-95 8-47 (87)
105 1fje_B Nucleolin RBD12, protei 94.0 0.016 5.6E-07 52.7 1.5 37 175-211 134-172 (175)
106 2ywk_A Putative RNA-binding pr 93.9 0.096 3.3E-06 42.3 6.0 39 50-94 13-51 (95)
107 3pgw_S U1-70K; protein-RNA com 93.9 0.17 5.9E-06 53.5 9.5 84 53-218 102-187 (437)
108 2cqc_A Arginine/serine-rich sp 93.5 0.12 4.1E-06 41.7 5.9 39 50-94 12-50 (95)
109 3smz_A Protein raver-1, ribonu 93.5 0.29 9.9E-06 48.1 9.8 38 51-94 93-130 (284)
110 3ucg_A Polyadenylate-binding p 93.3 0.1 3.5E-06 41.6 5.1 37 52-94 5-41 (89)
111 1s79_A Lupus LA protein; RRM, 93.2 0.11 3.6E-06 43.3 5.1 39 51-95 9-47 (103)
112 3d2w_A TAR DNA-binding protein 93.1 0.087 3E-06 42.5 4.4 39 50-94 8-46 (89)
113 1sjq_A Polypyrimidine tract-bi 93.1 0.16 5.3E-06 42.6 5.9 38 51-94 14-51 (105)
114 2ytc_A PRE-mRNA-splicing facto 93.0 0.16 5.6E-06 39.9 5.9 38 50-93 9-46 (85)
115 2cqd_A RNA-binding region cont 93.0 0.15 5.2E-06 43.0 6.0 39 50-94 14-52 (116)
116 2dha_A FLJ20171 protein; RRM d 92.7 0.15 5E-06 44.0 5.5 39 52-94 22-62 (123)
117 1jmt_A Splicing factor U2AF 35 92.6 0.34 1.2E-05 40.2 7.5 58 154-211 33-104 (104)
118 2khc_A Testis-specific RNP-typ 92.5 0.15 5.1E-06 43.1 5.3 38 51-94 38-75 (118)
119 2cpf_A RNA binding motif prote 92.5 0.15 5.2E-06 41.4 5.1 38 52-95 4-41 (98)
120 2dh8_A DAZ-associated protein 92.4 0.18 6E-06 41.6 5.5 39 50-94 13-51 (105)
121 3ulh_A THO complex subunit 4; 92.3 0.21 7.3E-06 41.3 5.9 40 49-94 25-64 (107)
122 2xs2_A Deleted in azoospermia- 92.3 0.19 6.4E-06 41.2 5.4 39 50-94 6-44 (102)
123 3pgw_A U1-A; protein-RNA compl 92.2 1.2 4.3E-05 43.4 12.5 35 51-91 7-45 (282)
124 3sde_A Paraspeckle component 1 92.2 0.53 1.8E-05 45.8 9.6 37 52-94 95-131 (261)
125 1wex_A Hypothetical protein (r 92.1 0.25 8.4E-06 41.1 6.0 37 51-93 13-49 (104)
126 2err_A Ataxin-2-binding protei 92.1 0.16 5.6E-06 42.4 4.9 39 50-94 26-64 (109)
127 2dgx_A KIAA0430 protein; RRM d 92.1 0.26 9E-06 40.0 6.1 40 49-94 5-48 (96)
128 2do0_A HnRNP M, heterogeneous 92.0 0.24 8.1E-06 41.5 5.9 38 51-94 13-50 (114)
129 1x4e_A RNA binding motif, sing 91.8 0.15 5.3E-06 40.2 4.2 37 52-94 4-40 (85)
130 3r27_A HnRNP L, heterogeneous 91.7 0.31 1.1E-05 40.3 6.0 37 50-92 18-54 (100)
131 2dit_A HIV TAT specific factor 91.7 0.52 1.8E-05 39.4 7.6 65 156-220 35-109 (112)
132 1wf0_A TDP-43, TAR DNA-binding 91.6 0.14 4.7E-06 40.8 3.8 37 52-94 4-40 (88)
133 2dgw_A Probable RNA-binding pr 91.6 0.26 8.9E-06 39.4 5.5 38 50-94 7-44 (91)
134 2ghp_A U4/U6 snRNA-associated 91.5 0.38 1.3E-05 47.5 7.7 36 52-93 209-245 (292)
135 2dng_A Eukaryotic translation 91.4 0.3 1E-05 40.1 5.8 38 50-94 12-49 (103)
136 2cq1_A PTB-like protein L; RRM 91.4 0.27 9.4E-06 40.6 5.4 38 51-94 13-50 (101)
137 2ad9_A Polypyrimidine tract-bi 91.3 0.25 8.7E-06 42.2 5.3 39 50-94 28-66 (119)
138 1iqt_A AUF1, heterogeneous nuc 91.2 0.13 4.4E-06 39.5 3.1 33 55-93 1-33 (75)
139 2rs2_A Musashi-1, RNA-binding 91.1 0.21 7.2E-06 41.8 4.6 38 51-94 23-60 (109)
140 2cq4_A RNA binding motif prote 91.0 0.21 7.2E-06 41.9 4.5 37 52-94 24-60 (114)
141 1uaw_A Mouse-musashi-1; RNP-ty 90.9 0.16 5.5E-06 39.1 3.4 34 55-94 2-35 (77)
142 1x5o_A RNA binding motif, sing 90.6 0.33 1.1E-05 40.6 5.3 38 51-94 23-60 (114)
143 1wg5_A Heterogeneous nuclear r 90.5 0.28 9.7E-06 40.5 4.8 38 51-94 13-51 (104)
144 2e44_A Insulin-like growth fac 90.4 0.33 1.1E-05 39.2 5.0 37 51-93 13-50 (96)
145 1why_A Hypothetical protein ri 90.3 0.35 1.2E-05 39.2 5.1 37 51-93 15-51 (97)
146 2cpy_A RNA-binding protein 12; 90.2 0.23 7.7E-06 41.9 3.9 38 51-94 13-51 (114)
147 1x4d_A Matrin 3; structural ge 90.0 0.27 9.2E-06 40.8 4.2 37 51-93 13-50 (102)
148 2db1_A Heterogeneous nuclear r 90.0 0.25 8.6E-06 41.9 4.1 41 51-95 15-56 (118)
149 2dnn_A RNA-binding protein 12; 89.5 0.2 7E-06 42.1 3.1 36 52-94 15-50 (109)
150 2hvz_A Splicing factor, argini 89.5 0.39 1.3E-05 39.2 4.8 34 55-94 2-35 (101)
151 2mss_A Protein (musashi1); RNA 89.4 0.22 7.5E-06 38.2 3.0 33 55-93 1-33 (75)
152 2jwn_A Embryonic polyadenylate 89.4 0.26 9E-06 41.9 3.8 37 52-94 35-71 (124)
153 1rk8_A CG8781-PA, CG8781-PA pr 89.2 0.58 2E-05 42.2 6.2 39 50-94 69-107 (165)
154 1x4b_A Heterogeneous nuclear r 89.1 0.37 1.3E-05 40.5 4.5 36 53-94 27-62 (116)
155 1wez_A HnRNP H', FTP-3, hetero 88.8 0.38 1.3E-05 39.7 4.2 37 51-94 13-49 (102)
156 2cjk_A Nuclear polyadenylated 88.5 0.41 1.4E-05 42.6 4.6 37 53-95 3-39 (167)
157 3s6e_A RNA-binding protein 39; 88.4 0.58 2E-05 39.6 5.2 55 157-211 27-91 (114)
158 2lmi_A GRSF-1, G-rich sequence 88.1 0.28 9.4E-06 40.8 2.9 41 50-94 8-49 (107)
159 2hgl_A HNRPF protein, heteroge 87.4 0.39 1.3E-05 42.1 3.6 39 51-95 42-83 (136)
160 2m2b_A RNA-binding protein 10; 87.1 0.51 1.7E-05 40.7 4.2 38 51-94 21-60 (131)
161 2hgm_A HNRPF protein, heteroge 87.0 0.67 2.3E-05 40.0 4.8 37 51-94 40-78 (126)
162 2krb_A Eukaryotic translation 86.8 0.56 1.9E-05 36.5 3.9 37 54-92 2-40 (81)
163 3v4m_A Splicing factor U2AF 65 86.8 1.2 4E-05 37.0 6.0 36 176-211 58-95 (105)
164 2d9o_A DNAJ (HSP40) homolog, s 86.6 0.99 3.4E-05 37.2 5.5 37 175-211 52-88 (100)
165 2hgn_A Heterogeneous nuclear r 86.5 0.36 1.2E-05 42.5 2.8 37 51-94 44-80 (139)
166 1x4f_A Matrin 3; structural ge 85.4 0.56 1.9E-05 39.6 3.4 36 51-92 23-59 (112)
167 2voo_A Lupus LA protein; RNA-b 85.3 0.77 2.6E-05 42.7 4.7 36 53-94 109-144 (193)
168 2hzc_A Splicing factor U2AF 65 85.2 1.1 3.9E-05 35.0 5.1 39 52-94 5-52 (87)
169 2e5g_A U6 snRNA-specific termi 85.2 1.2 4.1E-05 35.7 5.2 33 51-89 6-38 (94)
170 2adc_A Polypyrimidine tract-bi 84.7 1 3.6E-05 42.7 5.4 39 51-95 32-71 (229)
171 3md3_A Nuclear and cytoplasmic 84.4 1.5 5.1E-05 38.6 6.1 38 51-94 85-122 (166)
172 1l3k_A Heterogeneous nuclear r 83.4 1.3 4.3E-05 40.5 5.2 37 52-94 103-139 (196)
173 2cpi_A CCR4-NOT transcription 83.1 0.58 2E-05 39.0 2.5 38 51-94 13-53 (111)
174 2wbr_A GW182, gawky, LD47780P; 82.4 2.1 7.3E-05 34.4 5.4 37 51-93 5-41 (89)
175 2mss_A Protein (musashi1); RNA 82.2 1.4 4.8E-05 33.4 4.3 21 175-195 39-59 (75)
176 1b7f_A Protein (SXL-lethal pro 81.9 1.6 5.4E-05 38.6 5.2 38 51-94 87-124 (168)
177 1fjc_A Nucleolin RBD2, protein 81.8 1.4 4.8E-05 35.2 4.4 38 175-212 51-90 (96)
178 2g4b_A Splicing factor U2AF 65 81.7 2.1 7.1E-05 38.0 5.9 37 52-94 93-129 (172)
179 2e44_A Insulin-like growth fac 81.6 2.2 7.6E-05 34.0 5.5 39 175-213 52-92 (96)
180 2fc9_A NCL protein; structure 81.5 1.7 5.9E-05 35.1 4.8 37 175-211 51-89 (101)
181 2dgx_A KIAA0430 protein; RRM d 81.0 1.7 5.7E-05 35.0 4.5 35 177-211 52-88 (96)
182 1fxl_A Paraneoplastic encephal 81.0 2.1 7.1E-05 37.6 5.6 38 51-94 86-123 (167)
183 2pe8_A Splicing factor 45; RRM 80.7 1.4 4.7E-05 36.6 3.9 37 176-212 55-93 (105)
184 2ghp_A U4/U6 snRNA-associated 80.5 1.4 4.8E-05 43.3 4.6 39 51-95 39-77 (292)
185 1wel_A RNA-binding protein 12; 80.2 0.69 2.4E-05 39.4 2.0 32 51-88 23-54 (124)
186 2cpf_A RNA binding motif prote 80.0 1.9 6.4E-05 34.7 4.5 36 175-210 48-85 (98)
187 1x5p_A Negative elongation fac 79.9 2 7E-05 34.5 4.7 37 176-212 48-86 (97)
188 2yh0_A Splicing factor U2AF 65 79.9 2.7 9.4E-05 38.2 6.2 38 51-94 112-149 (198)
189 1why_A Hypothetical protein ri 79.2 2.8 9.5E-05 33.6 5.3 35 177-211 53-91 (97)
190 2cpi_A CCR4-NOT transcription 79.2 1.6 5.4E-05 36.3 3.9 36 176-211 62-99 (111)
191 3tyt_A Heterogeneous nuclear r 79.2 2.1 7.1E-05 40.0 5.1 38 52-95 3-41 (205)
192 2j8a_A Histone-lysine N-methyl 78.9 2 6.9E-05 37.2 4.4 37 54-96 3-43 (136)
193 2cqc_A Arginine/serine-rich sp 78.6 1.6 5.6E-05 34.7 3.7 36 175-210 55-92 (95)
194 4f02_A Polyadenylate-binding p 78.5 2.4 8.3E-05 39.6 5.4 36 53-94 103-138 (213)
195 1uaw_A Mouse-musashi-1; RNP-ty 77.9 1.5 5.3E-05 33.3 3.2 36 175-210 40-76 (77)
196 2lcw_A RNA-binding protein FUS 79.2 0.46 1.6E-05 39.9 0.0 32 51-88 5-36 (116)
197 2dgw_A Probable RNA-binding pr 77.4 1.9 6.5E-05 34.1 3.7 35 175-210 48-84 (91)
198 2hvz_A Splicing factor, argini 77.4 2.7 9.3E-05 33.9 4.7 35 176-210 36-72 (101)
199 2krb_A Eukaryotic translation 77.1 1.9 6.6E-05 33.3 3.6 26 175-200 45-70 (81)
200 1iqt_A AUF1, heterogeneous nuc 77.0 1.8 6.1E-05 32.7 3.3 22 175-196 39-60 (75)
201 3ulh_A THO complex subunit 4; 75.6 2.4 8E-05 34.7 3.9 36 175-210 68-105 (107)
202 3ucg_A Polyadenylate-binding p 75.3 2.5 8.5E-05 33.1 3.9 36 175-211 46-83 (89)
203 2dng_A Eukaryotic translation 75.3 2.9 0.0001 33.9 4.4 38 175-213 54-93 (103)
204 2ywk_A Putative RNA-binding pr 75.3 2.1 7.2E-05 34.1 3.4 36 175-210 55-92 (95)
205 2cjk_A Nuclear polyadenylated 74.9 1.8 6E-05 38.3 3.2 36 53-94 87-122 (167)
206 1wf0_A TDP-43, TAR DNA-binding 74.2 1.6 5.6E-05 34.3 2.4 38 176-213 41-78 (88)
207 3pgw_A U1-A; protein-RNA compl 74.1 3.2 0.00011 40.4 5.2 36 51-92 205-240 (282)
208 2ytc_A PRE-mRNA-splicing facto 74.0 3 0.0001 32.3 4.0 22 176-197 47-68 (85)
209 1x4f_A Matrin 3; structural ge 73.6 3.1 0.00011 34.9 4.1 42 176-217 61-106 (112)
210 2bz2_A Negative elongation fac 73.6 4.6 0.00016 34.2 5.3 39 175-213 71-111 (121)
211 1fjc_A Nucleolin RBD2, protein 73.2 2.4 8.1E-05 33.9 3.2 28 50-81 13-40 (96)
212 3s7r_A Heterogeneous nuclear r 72.5 2.3 8E-05 33.2 3.0 22 175-196 51-72 (87)
213 1wg5_A Heterogeneous nuclear r 72.4 3.6 0.00012 33.5 4.3 42 175-218 55-98 (104)
214 2dhx_A Poly (ADP-ribose) polym 72.2 5.2 0.00018 32.9 5.0 36 53-92 8-46 (104)
215 1x5o_A RNA binding motif, sing 71.7 5.3 0.00018 32.9 5.2 24 176-199 65-88 (114)
216 1qm9_A Polypyrimidine tract-bi 71.6 4.1 0.00014 37.2 4.9 37 51-93 118-155 (198)
217 1x4e_A RNA binding motif, sing 71.4 2.8 9.7E-05 32.5 3.2 25 175-199 45-69 (85)
218 2err_A Ataxin-2-binding protei 71.2 3.1 0.00011 34.3 3.6 36 175-210 67-104 (109)
219 2cq2_A Hypothetical protein LO 70.9 5.9 0.0002 33.3 5.3 35 52-92 24-60 (114)
220 2fc9_A NCL protein; structure 70.8 3.2 0.00011 33.5 3.5 27 51-81 13-39 (101)
221 2cqd_A RNA-binding region cont 70.6 4.1 0.00014 33.8 4.3 36 175-210 57-93 (116)
222 1wex_A Hypothetical protein (r 70.5 4.9 0.00017 33.0 4.7 35 177-211 51-89 (104)
223 2wbr_A GW182, gawky, LD47780P; 70.5 4.3 0.00015 32.6 4.0 36 175-210 41-78 (89)
224 2do0_A HnRNP M, heterogeneous 70.2 4.7 0.00016 33.2 4.6 25 175-199 54-78 (114)
225 3d2w_A TAR DNA-binding protein 69.7 3 0.0001 33.1 3.0 36 176-211 47-82 (89)
226 1wez_A HnRNP H', FTP-3, hetero 69.6 3.3 0.00011 33.8 3.4 22 175-196 53-74 (102)
227 2e5g_A U6 snRNA-specific termi 69.5 4 0.00014 32.5 3.8 35 179-214 47-83 (94)
228 2pe8_A Splicing factor 45; RRM 69.5 6.7 0.00023 32.3 5.3 41 52-95 7-49 (105)
229 1x4d_A Matrin 3; structural ge 69.5 4.1 0.00014 33.5 3.9 37 177-213 52-92 (102)
230 2lmi_A GRSF-1, G-rich sequence 69.2 4.2 0.00014 33.3 4.0 22 174-195 52-73 (107)
231 2cq1_A PTB-like protein L; RRM 68.9 4.2 0.00014 33.3 3.9 35 177-211 51-89 (101)
232 3tyt_A Heterogeneous nuclear r 68.9 3.9 0.00013 38.1 4.2 37 52-94 122-160 (205)
233 2khc_A Testis-specific RNP-typ 68.4 3.5 0.00012 34.3 3.4 26 175-200 80-105 (118)
234 3ue2_A Poly(U)-binding-splicin 67.5 3.5 0.00012 34.9 3.2 37 176-212 70-108 (118)
235 3r27_A HnRNP L, heterogeneous 67.2 5 0.00017 32.9 3.9 35 176-210 56-94 (100)
236 2jwn_A Embryonic polyadenylate 66.8 6.2 0.00021 33.1 4.7 36 175-211 76-113 (124)
237 3egn_A RNA-binding protein 40; 66.5 4.7 0.00016 34.9 3.9 36 175-210 90-127 (143)
238 2adc_A Polypyrimidine tract-bi 66.2 6.7 0.00023 36.9 5.3 36 52-93 150-186 (229)
239 1x4b_A Heterogeneous nuclear r 66.1 5.4 0.00019 33.0 4.1 36 175-211 67-104 (116)
240 1fje_B Nucleolin RBD12, protei 65.8 8.5 0.00029 34.1 5.7 60 175-235 52-121 (175)
241 2dh8_A DAZ-associated protein 65.3 3.7 0.00013 33.3 2.9 21 176-196 57-77 (105)
242 1sjq_A Polypyrimidine tract-bi 65.2 5.7 0.0002 32.9 4.0 35 177-211 52-90 (105)
243 2rs2_A Musashi-1, RNA-binding 65.0 6.9 0.00023 32.2 4.5 36 175-210 65-101 (109)
244 2ad9_A Polypyrimidine tract-bi 64.9 4.6 0.00016 34.2 3.4 35 177-211 67-105 (119)
245 3u1l_A PRE-mRNA-splicing facto 64.6 4.8 0.00017 38.7 3.9 41 51-93 132-177 (240)
246 1wel_A RNA-binding protein 12; 64.5 3.9 0.00013 34.5 2.9 35 175-210 65-101 (124)
247 1sjr_A Polypyrimidine tract-bi 64.4 8.8 0.0003 34.5 5.4 33 54-92 47-79 (164)
248 2hgl_A HNRPF protein, heteroge 64.4 4.8 0.00016 34.9 3.5 35 175-210 86-122 (136)
249 2cq2_A Hypothetical protein LO 63.9 4.9 0.00017 33.8 3.4 24 177-200 63-86 (114)
250 1s79_A Lupus LA protein; RRM, 63.7 4.6 0.00016 33.1 3.1 21 175-195 50-70 (103)
251 3ue2_A Poly(U)-binding-splicin 61.9 7.2 0.00025 32.9 4.1 42 52-96 19-62 (118)
252 2dnn_A RNA-binding protein 12; 60.6 5.6 0.00019 33.0 3.1 22 174-195 53-74 (109)
253 2hzc_A Splicing factor U2AF 65 59.3 6 0.0002 30.6 3.0 23 176-199 52-74 (87)
254 2cpy_A RNA-binding protein 12; 59.1 5.2 0.00018 33.2 2.7 22 175-196 55-76 (114)
255 3zzy_A Polypyrimidine tract-bi 59.0 11 0.00037 32.5 4.7 34 54-93 29-62 (130)
256 1sjr_A Polypyrimidine tract-bi 58.6 12 0.00042 33.5 5.2 36 176-211 83-122 (164)
257 2e5i_A Heterogeneous nuclear r 58.6 14 0.00048 31.4 5.3 36 179-214 64-103 (124)
258 2yh0_A Splicing factor U2AF 65 57.7 7.1 0.00024 35.3 3.6 36 176-211 155-192 (198)
259 2cq4_A RNA binding motif prote 57.5 5 0.00017 33.1 2.3 23 175-198 65-87 (114)
260 1rk8_A CG8781-PA, CG8781-PA pr 57.3 8.5 0.00029 34.2 4.0 35 176-210 113-149 (165)
261 2e5i_A Heterogeneous nuclear r 56.8 12 0.00043 31.7 4.7 32 56-93 28-59 (124)
262 3egn_A RNA-binding protein 40; 56.5 6 0.00021 34.2 2.8 28 51-82 43-70 (143)
263 2db1_A Heterogeneous nuclear r 55.9 5.4 0.00018 33.4 2.2 21 175-195 59-79 (118)
264 2m2b_A RNA-binding protein 10; 55.3 8.3 0.00028 32.8 3.4 25 175-200 65-89 (131)
265 2hgm_A HNRPF protein, heteroge 54.9 5.6 0.00019 34.0 2.2 23 174-196 81-103 (126)
266 1l8d_A DNA double-strand break 54.5 47 0.0016 27.3 7.9 31 139-169 49-85 (112)
267 2dha_A FLJ20171 protein; RRM d 54.2 5.3 0.00018 34.0 1.9 22 175-196 66-87 (123)
268 2hgn_A Heterogeneous nuclear r 53.8 7.2 0.00025 34.0 2.8 39 174-213 83-123 (139)
269 2lcw_A RNA-binding protein FUS 58.5 2.8 9.6E-05 34.9 0.0 36 175-210 55-92 (116)
270 1x5p_A Negative elongation fac 53.2 21 0.00072 28.2 5.4 34 51-92 13-46 (97)
271 3zzy_A Polypyrimidine tract-bi 51.3 13 0.00045 31.9 4.0 35 179-213 68-106 (130)
272 1go4_E MAD1 (mitotic arrest de 51.0 51 0.0018 26.8 7.1 71 96-171 19-91 (100)
273 1owx_A Lupus LA protein, SS-B, 49.6 16 0.00055 31.0 4.2 41 50-95 15-55 (121)
274 2dnr_A Synaptojanin-1; RRM dom 48.2 15 0.0005 29.5 3.5 32 178-210 50-83 (91)
275 3u1l_A PRE-mRNA-splicing facto 47.7 19 0.00064 34.5 4.8 25 176-200 178-202 (240)
276 3v4m_A Splicing factor U2AF 65 45.8 17 0.00058 29.7 3.7 42 53-96 5-52 (105)
277 3he5_A Synzip1; heterodimeric 45.2 51 0.0018 21.8 5.0 20 146-165 29-48 (49)
278 2xs2_A Deleted in azoospermia- 41.5 5.7 0.0002 31.9 0.1 21 175-195 48-68 (102)
279 2voo_A Lupus LA protein; RNA-b 40.6 15 0.00051 33.7 2.8 23 175-197 148-170 (193)
280 3dxb_A Thioredoxin N-terminall 39.4 23 0.00079 32.9 4.1 37 176-212 174-212 (222)
281 2kn4_A Immunoglobulin G-bindin 35.5 51 0.0017 28.5 5.5 61 175-235 11-92 (158)
282 2dhx_A Poly (ADP-ribose) polym 33.3 53 0.0018 26.9 4.6 45 178-222 48-95 (104)
283 2dit_A HIV TAT specific factor 32.7 42 0.0014 27.3 4.2 39 51-91 13-58 (112)
284 3tht_A Alkylated DNA repair pr 30.6 31 0.001 34.9 3.5 22 178-199 57-78 (345)
285 2bz2_A Negative elongation fac 29.7 44 0.0015 27.8 3.9 34 51-92 37-70 (121)
286 2rdd_B UPF0092 membrane protei 29.7 26 0.00088 22.9 1.8 18 440-457 4-21 (37)
287 1ufw_A Synaptojanin 2; RNP dom 29.4 36 0.0012 27.5 3.0 22 177-199 58-79 (95)
288 2l9w_A U4/U6 snRNA-associated- 29.2 1.4E+02 0.0046 24.9 6.4 49 44-96 12-63 (117)
289 2d9o_A DNAJ (HSP40) homolog, s 28.1 1.3E+02 0.0045 24.0 6.3 41 51-93 8-51 (100)
290 3s6e_A RNA-binding protein 39; 27.9 61 0.0021 26.8 4.4 41 53-95 7-53 (114)
291 2k48_A Nucleoprotein; viral pr 26.8 95 0.0032 25.3 4.9 22 148-169 82-103 (107)
292 1wey_A Calcipressin 1; structu 26.3 69 0.0024 26.3 4.2 43 55-97 7-57 (104)
293 2dnr_A Synaptojanin-1; RRM dom 25.2 79 0.0027 25.2 4.3 44 50-95 4-51 (91)
294 3twe_A Alpha4H; unknown functi 23.8 1E+02 0.0036 17.8 3.3 19 153-171 6-24 (27)
295 1pi7_A VPU protein, U ORF prot 22.7 88 0.003 20.4 3.3 24 15-38 11-34 (36)
296 2lf0_A Uncharacterized protein 21.6 1.4E+02 0.005 24.8 5.2 22 148-169 36-57 (123)
297 2ic6_A Nucleocapsid protein; h 20.4 1.6E+02 0.0056 22.6 4.9 23 147-169 51-73 (78)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.29 E-value=0.0013 Score=54.70 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=30.8
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+..+|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 18 ~gt~lfV~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d 54 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMT----QDELRSLFSSI--GEVESAKLIRD 54 (99)
T ss_dssp CCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEeEeeec
Confidence 456899999999886 79999999987 67888876654
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.0027 Score=51.87 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=60.3
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 130 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~ 130 (590)
+..+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|..
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~~~---------------------------------- 42 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNIT----EDMLRGIFEPF--GKIDNIVLMKDSD---------------------------------- 42 (95)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEECCSS----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEeecCC----------------------------------
Confidence 3468999999999876 79999999987 6688776554320
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccC--CCCceeee
Q 007784 131 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 208 (590)
Q Consensus 131 ~rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 208 (590)
..+..+.|||+|++.++|..|.+.++.. +...++|+
T Consensus 43 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 43 ------------------------------------------TGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp ------------------------------------------SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 0123578999999999999999876543 33456777
Q ss_pred eCCCCC
Q 007784 209 DAPESR 214 (590)
Q Consensus 209 ~AP~P~ 214 (590)
.|.++.
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 765544
No 3
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.18 E-value=0.0027 Score=53.63 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=63.4
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 129 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~ 129 (590)
.+..+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|-.
T Consensus 23 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNIT----EDMLRGIFEPF--GRIESIQLMMDSE--------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCC----HHHHHHHHTTT--SCEEEEEEEEETT---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEcCC---------------------------------
Confidence 45678999999999876 79999999987 6688777655320
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccC--CCCceee
Q 007784 130 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 207 (590)
Q Consensus 130 ~~rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 207 (590)
.....|.|||+|.+.++|..|.+.+... ....++|
T Consensus 64 -------------------------------------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 64 -------------------------------------------TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp -------------------------------------------TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred -------------------------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 0134579999999999999999876654 3456778
Q ss_pred eeCCCCCC
Q 007784 208 SDAPESRE 215 (590)
Q Consensus 208 ~~AP~P~D 215 (590)
+.|-+..|
T Consensus 101 ~~a~~k~d 108 (108)
T 2jrs_A 101 GHVTERTD 108 (108)
T ss_dssp ECSCSSCC
T ss_pred EEcccCCC
Confidence 87776654
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.17 E-value=0.0019 Score=51.82 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=30.1
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
++.+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 4 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEIT----TAAIAAAFAPF--GRISDARVVKD 41 (87)
T ss_dssp --CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCceEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEec
Confidence 4578999999999876 79999999987 66887776543
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.16 E-value=0.00079 Score=60.86 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.4
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
|..||.|.|||.+.. +++|+++|+++ |.|.++.+.+|.
T Consensus 1 s~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~~~~~~ 38 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMT----QEEFRSLFGSI--GEIESCKLVRDK 38 (167)
T ss_dssp CCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECT
T ss_pred CcceEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEEeCC
Confidence 357999999999886 79999999987 678888888764
No 6
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.11 E-value=0.0032 Score=50.00 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=29.3
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 2 ~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 36 (83)
T 3md1_A 2 FNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWD 36 (83)
T ss_dssp EEEEEECCCTTCC----HHHHHHHHTTS--TTEEEEEEEEC
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEc
Confidence 7999999999876 79999999987 67888776553
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.08 E-value=0.0029 Score=53.69 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=61.1
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 130 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~ 130 (590)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 4 ~p~~~lfV~nL~~~~t----e~~L~~~F~~~--G~i~~v~i~~d~~---------------------------------- 43 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVR----ETFLKDMCRKY--GEVEEVEILLHPR---------------------------------- 43 (110)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECTT----------------------------------
T ss_pred CCCcEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEECCC----------------------------------
Confidence 3457999999999886 79999999987 7788888766431
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccC--CCCceeee
Q 007784 131 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 208 (590)
Q Consensus 131 ~rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 208 (590)
..+..|.|||+|++.++|..|.+.++.. ....+.|+
T Consensus 44 ------------------------------------------tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 44 ------------------------------------------TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 0134589999999999999999887654 34456777
Q ss_pred eCC
Q 007784 209 DAP 211 (590)
Q Consensus 209 ~AP 211 (590)
.|+
T Consensus 82 ~a~ 84 (110)
T 3s8s_A 82 LDI 84 (110)
T ss_dssp ECS
T ss_pred ECC
Confidence 775
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.06 E-value=0.0011 Score=54.17 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=24.7
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEE
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 89 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v 89 (590)
.+|.|+|||.+.+ +++|+++|+++. ..|.+|
T Consensus 2 ~~i~v~nLp~~~t----e~~l~~~F~~~G-~~v~~v 32 (91)
T 2lxi_A 2 NIVMLRMLPQAAT----EDDIRGQLQSHG-VQAREV 32 (91)
T ss_dssp CEEEEETCCSSCC----HHHHHHHHHHHT-CCCSBC
T ss_pred CEEEEeCCCCCCC----HHHHHHHHHHhC-CEeEEE
Confidence 5899999999886 799999999873 145444
No 9
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.05 E-value=0.0024 Score=51.27 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=29.0
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
...||.|.|||.+.. +++|+++|+++ |.|.++.+..
T Consensus 3 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 38 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVT----KDHIMEIFSTY--GKIKMIDMPV 38 (88)
T ss_dssp CCCEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEe
Confidence 457999999999886 79999999987 6677765443
No 10
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.04 E-value=0.0041 Score=51.59 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=30.8
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....+||.|.|||.+.. +++|+++|+++ |.|.++.+..
T Consensus 9 ~~~~~~l~v~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 46 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTN----EQSLEQVFSKY--GQISEVVVVK 46 (102)
T ss_dssp CCCCSEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEEECC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35678999999999876 79999999998 5677776544
No 11
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.0055 Score=51.09 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=59.8
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 129 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~ 129 (590)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 52 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVS----EPLLWELFLQA--GPVVNTHMPKDRV--------------------------------- 52 (105)
T ss_dssp CCTTTEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCBCSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC---------------------------------
Confidence 35678999999999886 79999999997 6677776443210
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccC--CCCceee
Q 007784 130 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 207 (590)
Q Consensus 130 ~~rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 207 (590)
.....|.|||+|.+.++|..|.+.++.. ....+.|
T Consensus 53 -------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 53 -------------------------------------------TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp -------------------------------------------SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred -------------------------------------------CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 0123468999999999999999976643 2345667
Q ss_pred eeCCCC
Q 007784 208 SDAPES 213 (590)
Q Consensus 208 ~~AP~P 213 (590)
+.|-.+
T Consensus 90 ~~a~~~ 95 (105)
T 1x5u_A 90 NKASAH 95 (105)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 766443
No 12
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.03 E-value=0.0032 Score=50.25 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.0
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
++.+||.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 5 ~~~~~l~V~nl~~~~~----~~~l~~~f~~~--G~i~~v~i~~ 41 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPL 41 (85)
T ss_dssp CCSSEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECCE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhcc--CCEEEEEEEE
Confidence 4568999999999876 79999999997 5677776533
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.03 E-value=0.0064 Score=50.11 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....+||.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 7 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 44 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCG----ETELREYFKKF--GVVTEVVMIY 44 (99)
T ss_dssp CSSCCEEEEESCCSSCC----HHHHHHHHSSS--SCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 34578999999999876 79999999987 6788776554
No 14
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.00 E-value=0.0051 Score=51.41 Aligned_cols=38 Identities=11% Similarity=0.345 Sum_probs=30.4
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....++|.|.|||.+.+ +++|+++|+++ |.|.+|.+..
T Consensus 10 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 47 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLD----EKDLKPLFEEF--GKIYELTVLK 47 (106)
T ss_dssp CTTCEEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEECCC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEe
Confidence 45678999999999876 79999999998 5677765433
No 15
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.00 E-value=0.0057 Score=49.58 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=29.7
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
.+..++|.|.|||.+.. +++|+++|+++ |.|.++.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~~~i~ 41 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFT----WKMLKDKFNEC--GHVLYADIK 41 (92)
T ss_dssp SSSCCEEEECSCCTTCC----HHHHHHHHHTT--SCEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 34578999999999876 79999999987 567766544
No 16
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.99 E-value=0.0017 Score=52.80 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=54.0
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 133 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~rP 133 (590)
+||.|.|||.+.+ +++|+++|+++.+..|.++.+.+|-.
T Consensus 2 ~~l~V~nL~~~~t----~~~l~~~F~~~G~~~v~~v~i~~~~~------------------------------------- 40 (90)
T 3p5t_L 2 IALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFENRA------------------------------------- 40 (90)
T ss_dssp --CEEESCCTTCC----HHHHHHHHHTTTCCCCCCEEEEECTT-------------------------------------
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHHhCCCceEEEEEEecCC-------------------------------------
Confidence 6999999999886 79999999987322677666554320
Q ss_pred cccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 134 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 134 ~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
..+..|.|||+|.+.++|..|.+.++.. +...++|+.|.
T Consensus 41 ---------------------------------------~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 41 ---------------------------------------NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp ---------------------------------------TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred ---------------------------------------CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 0134578999999999999999877654 33456676665
Q ss_pred CCC
Q 007784 212 ESR 214 (590)
Q Consensus 212 ~P~ 214 (590)
.|.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 17
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.0065 Score=49.12 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=29.2
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEE
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 91 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~ 91 (590)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~~~ 41 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACT----SQELRSLFERR--GRVIECDV 41 (90)
T ss_dssp SCCSCCEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHcC--CCEEEEEE
Confidence 45678999999999876 79999999998 55766653
No 18
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.006 Score=51.01 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=30.5
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....++|.|.|||.+.. +++|+++|+++ |.|.+|.+..
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (107)
T 2cph_A 12 KQTTSKILVRNIPFQAN----QREIRELFSTF--GELKTVRLPK 49 (107)
T ss_dssp SSCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCC
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHcc--CCeEEEEEec
Confidence 35678999999999886 79999999987 5677775443
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.006 Score=50.38 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=30.7
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
.....+|.|.|||.+.. +++|+++|+++ |.|.++.+..
T Consensus 14 ~~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 51 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCT----KEELEEICKAH--GTVKDLRLVT 51 (100)
T ss_dssp CCCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEE
Confidence 34578999999999886 79999999987 6687776554
No 20
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0055 Score=50.46 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=58.9
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 130 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~ 130 (590)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 45 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSS----EEDLEKLFSAY--GPLSELHYPIDSL---------------------------------- 45 (99)
T ss_dssp CSCEEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCCCTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEecCC----------------------------------
Confidence 3568999999999876 78999999987 6677665433210
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccC--CCCceeee
Q 007784 131 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 208 (590)
Q Consensus 131 ~rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 208 (590)
.....+.|||+|.+.++|..|.+.++.. ....+.|+
T Consensus 46 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 46 ------------------------------------------TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp ------------------------------------------TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred ------------------------------------------CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 0134578999999999999999876543 33456666
Q ss_pred eCCCCC
Q 007784 209 DAPESR 214 (590)
Q Consensus 209 ~AP~P~ 214 (590)
.|-.+.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 665443
No 21
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.0042 Score=50.59 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=31.5
Q ss_pred CCCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 49 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 49 ~~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
..+...+|.|.|||.+.. +++|+++|+++ |.|.++.+..
T Consensus 12 ~~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 50 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLT----NNDLYRIFSKY--GKVVKVTIMK 50 (94)
T ss_dssp CCCCTTSEEEESCCTTSC----HHHHHHHTTTT--SCEEEEEECC
T ss_pred CCCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 345678999999999886 78999999987 6687776554
No 22
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.94 E-value=0.0036 Score=56.57 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=32.1
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
+.+||.|.|||.+.. +++|+++|+++ |.|.++.+..|.
T Consensus 2 ~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~~~ 39 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMT----DRELYALFRAI--GPINTCRIMRDY 39 (168)
T ss_dssp CCSEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEET
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEeC
Confidence 468999999999886 79999999997 668888877763
No 23
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.93 E-value=0.0051 Score=52.31 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=31.1
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
.+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 22 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFG----DQDLLQMFMPF--GNVVSAKVFI 59 (115)
T ss_dssp CSTTCCEEEESCCSSCC----HHHHHHHHGGG--SCCSEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 34568999999999886 79999999987 6677777654
No 24
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.01 Score=49.17 Aligned_cols=38 Identities=8% Similarity=0.159 Sum_probs=30.8
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....++|.|.|||.+.. +++|+++|+++ |.|.+|.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 49 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIF 49 (103)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHGGGT--SCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 45678999999999876 79999999987 6687776544
No 25
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.89 E-value=0.009 Score=50.68 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=32.0
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEIT----TEDIKAAFAPF--GRISDARVVKD 50 (115)
T ss_dssp STTCEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEc
Confidence 34678999999999886 79999999988 66888876653
No 26
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.87 E-value=0.0099 Score=49.48 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=30.5
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
+..+||.|.|||.+.. +++|+++|+++ |.|.++.+..
T Consensus 13 ~~~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQS----EEDVLRLFQPF--GVIDECTVLR 49 (105)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 4578999999999886 79999999987 5687776554
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.86 E-value=0.0061 Score=49.96 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=57.6
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 132 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~r 132 (590)
++||.|.|||.+.. +++|+++|+++ |.|.++.+.+|-.
T Consensus 2 ~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 39 (96)
T 2x1f_A 2 SRVVYLGSIPYDQT----EEQILDLCSNV--GPVINLKMMFDPQ------------------------------------ 39 (96)
T ss_dssp CSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCBCTT------------------------------------
T ss_pred CcEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEeCCC------------------------------------
Confidence 47999999999886 79999999987 6677766443210
Q ss_pred CcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeC
Q 007784 133 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 210 (590)
Q Consensus 133 P~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 210 (590)
..+..|.|||+|++.++|..|.+.++.. +...+.|+.|
T Consensus 40 ----------------------------------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 40 ----------------------------------------TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp ----------------------------------------TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 0123478999999999999999876543 3345667766
Q ss_pred CCC
Q 007784 211 PES 213 (590)
Q Consensus 211 P~P 213 (590)
-++
T Consensus 80 ~~~ 82 (96)
T 2x1f_A 80 SNS 82 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 544
No 28
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.86 E-value=0.0062 Score=51.93 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=29.3
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
.-+|.|.|||.+.+ +++|+++|+++ |.|.+|.+.+
T Consensus 5 ~~~lfV~nLp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 5 SGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCEEEECCCCCCCC----HHHHHHHHhcc--CCEEEEEEee
Confidence 45899999999886 79999999998 6788776654
No 29
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.85 E-value=0.0078 Score=50.62 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=28.0
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~ 46 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYAD 46 (108)
T ss_dssp SCCCEEEEESCCSSCC----HHHHHHHHGGG--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEE
Confidence 4578999999999886 79999999987 5666554
No 30
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.85 E-value=0.0077 Score=48.90 Aligned_cols=36 Identities=6% Similarity=0.065 Sum_probs=28.7
Q ss_pred CCCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 49 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 49 ~~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
......+|.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~v~ 41 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCT----NQELRAKFEEY--GPVIECD 41 (92)
T ss_dssp CCCSSEEEEEESCCSSCC----HHHHHHHHHTT--SCCCEEE
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEE
Confidence 345678999999999886 79999999987 5566554
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.82 E-value=0.012 Score=48.81 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=31.0
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....++|.|.|||.+.. +++|+++|+++ |.|.+|.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVT----EVLILQLFSQI--GPCKSCKMIT 49 (103)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 34568999999999886 79999999998 6687776554
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.82 E-value=0.0028 Score=52.37 Aligned_cols=37 Identities=3% Similarity=0.020 Sum_probs=27.7
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
....-||.|+|||.+.+ +++|+++|+++.+-.+.+|.
T Consensus 6 ~~~m~tlfV~nL~~~~t----ee~L~~~F~~~G~i~v~~v~ 42 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTV----VDSIMTALSPYASLAVNNIR 42 (95)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHSTTTCCCCGGGEE
T ss_pred CCccCEEEEeCCCCcCC----HHHHHHHHHhhCCccEEEEE
Confidence 34567999999999886 79999999987432444444
No 33
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.81 E-value=0.0051 Score=50.33 Aligned_cols=37 Identities=30% Similarity=0.235 Sum_probs=27.4
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 212 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 212 (590)
..+.|||+|.+.++|..|.+.++.. ....+.|+.|-.
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 47 SKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp CCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 4579999999999999999876543 234566666543
No 34
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.81 E-value=0.0096 Score=49.64 Aligned_cols=39 Identities=8% Similarity=0.170 Sum_probs=31.8
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+..|
T Consensus 20 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~~ 58 (106)
T 1p27_B 20 SVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNLD 58 (106)
T ss_dssp BTTBEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCeEEEEEEec
Confidence 34568999999999886 79999999998 67888876653
No 35
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.80 E-value=0.011 Score=47.66 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=28.0
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~ 39 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREAT----EQEIRSLFEQY--GKVLECD 39 (90)
T ss_dssp SSCCEEEEEESCCSSCC----HHHHHHHHHTS--SCEEEEE
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEE
Confidence 34578999999999886 78999999987 5566554
No 36
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.79 E-value=0.0043 Score=50.86 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=34.5
Q ss_pred ceEEEEecCHHHHHHHHHhcccCC--CCceeeeeCCCCCCee
Q 007784 178 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELI 217 (590)
Q Consensus 178 ~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DI~ 217 (590)
|.|||+|+++++|+.|.+.++... ...+++..|+..+|++
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCccee
Confidence 999999999999999998876654 4568899999999986
No 37
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.77 E-value=0.0086 Score=49.71 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=31.2
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....||.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTT----EQDLKEYFSTF--GEVLMVQVKKD 50 (103)
T ss_dssp CCCCCEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 4568999999999886 79999999997 66888876553
No 38
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.75 E-value=0.012 Score=48.43 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=30.7
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCcee-EEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY-RSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~-~v~~~~ 93 (590)
.....||.|.|||.+.+ +++|+++|+++ |.|. ++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~v~i~~ 44 (99)
T 2div_A 6 SGMAASLWMGDLEPYMD----ENFISRAFATM--GETVMSVKIIR 44 (99)
T ss_dssp CSSSSEEEECSCCTTCC----HHHHHHHHHHT--TCCCCEEEEEE
T ss_pred CCCccEEEEeCCCCCCC----HHHHHHHHHHh--CCcceEEEEee
Confidence 44568999999999876 79999999997 5676 776654
No 39
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.74 E-value=0.011 Score=50.58 Aligned_cols=36 Identities=6% Similarity=0.148 Sum_probs=29.2
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
...||.|.|||.+.. +++|+++|+++ |.|.+|.+..
T Consensus 6 ~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 41 (116)
T 2fy1_A 6 HPGKLFIGGLNRETN----EKMLKAVFGKH--GPISEVLLIK 41 (116)
T ss_dssp SCCEEEEECCTTTCC----HHHHHHHHHTS--SCCSEEEEEC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 457999999999876 79999999987 5677776543
No 40
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.73 E-value=0.009 Score=49.60 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=30.7
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
.....||.|.|||.+.+ +++|+++|+++ |.|.++.+..
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGID----DERLRKAFSPF--GTITSAKVMM 49 (103)
T ss_dssp CSSCCCEEEECCCTTCC----HHHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 34678999999999886 79999999987 5687776554
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.69 E-value=0.0091 Score=49.56 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=29.8
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
....+||.|.|||.+.. +++|+++|+++ |.|.++.+.
T Consensus 10 ~~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~ 46 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTS----PDSLRRVFEKY--GRVGDVYIP 46 (103)
T ss_dssp CSCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECC
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 34568999999999876 79999999987 667777643
No 42
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.69 E-value=0.012 Score=49.54 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.0
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
...+||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSE----EEALGEVLQQF--GDLKYVRVVL 49 (111)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4568999999999876 79999999987 6677776544
No 43
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.013 Score=48.61 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=30.9
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....+||.|.|||.+.+ +++|+++|++.+ |.|.++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~~-G~v~~v~i~~ 44 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVD----DGMLYEFFVKVY-PSCRGGKVVL 44 (104)
T ss_dssp SSCCCCEEEECCCTTCC----HHHHHHHHHHHC-TTEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHHhC-CCeEEEEEEE
Confidence 34568999999999876 799999999833 5687776654
No 44
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.67 E-value=0.009 Score=50.32 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=27.1
Q ss_pred cceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 213 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 213 (590)
.+.|||+|.+.++|..|.+.++.. +...+.|+.|-+|
T Consensus 62 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 62 KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 378999999999999999876543 3345667666433
No 45
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.66 E-value=0.0092 Score=49.51 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 49 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTR----ETDLQELFRPF--GSISRIYLAK 49 (103)
T ss_dssp CSSSEEEEEESCCTTCC----HHHHHTTSTTT--CCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEee
Confidence 35578999999999876 79999999987 6788877654
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.65 E-value=0.011 Score=49.62 Aligned_cols=38 Identities=5% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 49 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 49 ~~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
.....+||.|.|||.+.. +++|+++|+++ |.|.++.+.
T Consensus 22 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 59 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLN 59 (110)
T ss_dssp CBTTBEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 345678999999999876 79999999998 667777543
No 47
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.65 E-value=0.015 Score=48.87 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=28.1
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
+..+||.|.|||.+.+ +++|+++|+++ |.|.+|.
T Consensus 23 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~ 56 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLT----DQLMRQTFSPF--GQIMEIR 56 (109)
T ss_dssp SSCCEEEEECCSSCCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEE
Confidence 4568999999999886 79999999987 5676664
No 48
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.65 E-value=0.013 Score=48.61 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.5
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
....+|.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 9 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~ 42 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVT----EEILEKAFSQF--GKLERVK 42 (103)
T ss_dssp CCCCCEEEECCCTTCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 3468999999999876 79999999987 5666554
No 49
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.64 E-value=0.017 Score=47.54 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=29.2
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEE
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 89 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v 89 (590)
....+||.|.|||.+.+ +++|+++|+++.||.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~g~g~v~~~ 47 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTS----EEMIEKEFNNIKPGAVERV 47 (99)
T ss_dssp SSCCCEEEEESCCTTCC----HHHHHHHHHTTSTTCEEEE
T ss_pred cCCcCEEEEeCCCCCCC----HHHHHHHHHhcCCcceEEE
Confidence 34578999999999876 7999999999866666554
No 50
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.63 E-value=0.012 Score=48.96 Aligned_cols=37 Identities=11% Similarity=0.373 Sum_probs=30.0
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....+||.|.|||.+.+ +++|+++|+++ | |.+|.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 48 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 48 (104)
T ss_dssp SSSCEEEEEESCCSSCC----HHHHHHHTTTS--C-EEEEECCB
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHHC--C-ceEEEEec
Confidence 34678999999999876 79999999987 5 87776543
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.63 E-value=0.011 Score=50.93 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=31.0
Q ss_pred CCCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 49 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 49 ~~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
..+..+||.|.|||.+++ +++|+++|+++ |.|.+|.+..
T Consensus 18 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 56 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNL 56 (126)
T ss_dssp CCSSSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 345678999999999876 79999999987 6777776544
No 52
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.61 E-value=0.013 Score=52.76 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=31.3
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....||.|.|||.+++ +++|+++|+++ |.|.+|.+.+|
T Consensus 37 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 74 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTT----EEQIYELFSKS--GDIKKIIMGLD 74 (156)
T ss_dssp TTCCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 3568999999999876 79999999998 66888876553
No 53
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.60 E-value=0.013 Score=53.05 Aligned_cols=103 Identities=20% Similarity=0.295 Sum_probs=71.4
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 131 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~ 131 (590)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 40 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWS----EKDLRELFEQY--GAVYEINVLRDRS----------------------------------- 40 (175)
T ss_dssp CCEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEECS-----------------------------------
T ss_pred CceEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEecCC-----------------------------------
Confidence 358999999999886 79999999997 6788887765421
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccCC-----CCcee
Q 007784 132 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL-----VDTWT 206 (590)
Q Consensus 132 rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~-----~~~~~ 206 (590)
.| ..+..|.|||+|.+.++|..|.+.++... ...+.
T Consensus 41 -----------~~----------------------------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 41 -----------QN----------------------------PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp -----------SS----------------------------SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred -----------CC----------------------------CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 01 12457899999999999999998765432 22333
Q ss_pred eeeCC-------CCCCeeeCCcCcchHHHHHHHHH
Q 007784 207 VSDAP-------ESRELIWNNLNIKFFQRQIRQYV 234 (590)
Q Consensus 207 v~~AP-------~P~DI~W~NL~~~~~~r~~R~~~ 234 (590)
+..+. +...|.=.||..+..+..++.++
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMF 116 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHH
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHH
Confidence 33322 33457777887776666566543
No 54
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0043 Score=55.81 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=31.2
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|-
T Consensus 1 R~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~~~ 36 (166)
T 3md3_A 1 RVLYVGNLDKAIT----EDILKQYFQVG--GPIANIKIMIDK 36 (166)
T ss_dssp CEEEEEEEETTCC----HHHHHHHHGGG--SCEEEEEEECCC
T ss_pred CEEEECCCCCcCC----HHHHHHHHHhc--CCeEEEEEEECC
Confidence 5899999999886 79999999998 678899888764
No 55
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.57 E-value=0.0067 Score=50.38 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=58.8
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 131 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~ 131 (590)
+.+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|-.
T Consensus 7 ~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~~~~----------------------------------- 45 (104)
T 1p1t_A 7 SLRSVFVGNIPYEAT----EEQLKDIFSEV--GPVVSFRLVYDRE----------------------------------- 45 (104)
T ss_dssp HHSCEEEESCCTTSC----HHHHHHHHHTT--SCCSEEEEEEETT-----------------------------------
T ss_pred CccEEEEeCCCCcCC----HHHHHHHHHhc--CCeeEEEEEeCCC-----------------------------------
Confidence 468999999999876 79999999987 5677776554320
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccC--CCCceeeee
Q 007784 132 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 209 (590)
Q Consensus 132 rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 209 (590)
.....|.|||+|.+..+|..|.+.++.. ....+.|+.
T Consensus 46 -----------------------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 46 -----------------------------------------TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp -----------------------------------------TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred -----------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 0123479999999999999999877543 334566766
Q ss_pred CCCC
Q 007784 210 APES 213 (590)
Q Consensus 210 AP~P 213 (590)
|-.+
T Consensus 85 a~~~ 88 (104)
T 1p1t_A 85 AASE 88 (104)
T ss_dssp TTCT
T ss_pred CCCc
Confidence 6543
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.56 E-value=0.016 Score=47.62 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=27.1
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeE
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 88 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~ 88 (590)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 42 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 42 (99)
T ss_dssp CCCCSEEEEECCCSSCC----HHHHHHHHTTT--SCBCE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCEee
Confidence 45678999999999886 79999999987 55654
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.54 E-value=0.0074 Score=49.96 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=28.7
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEE
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 91 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~ 91 (590)
.....+|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 9 ~~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i 44 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQI 44 (102)
T ss_dssp CCCCSCEEEESCCSSCC----HHHHHHHHTTT--SCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcc--CCEEEEEE
Confidence 34678999999999876 79999999987 56666553
No 58
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.54 E-value=0.014 Score=48.13 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=27.9
Q ss_pred ceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCCC
Q 007784 178 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 214 (590)
Q Consensus 178 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 214 (590)
+.|||+|++.++|..|.+.++.. +...++|+.|-.+.
T Consensus 52 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 52 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 68999999999999999877654 23456777765443
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.46 E-value=0.029 Score=46.99 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=28.2
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
...+||.|.|||.+++ +++|+++|+++ |.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~ 53 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIR----TKDIEDVFYKY--GAIRDID 53 (109)
T ss_dssp CCSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEE
Confidence 4568999999999886 79999999997 5676664
No 60
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.44 E-value=0.014 Score=51.10 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=29.4
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 61 ~~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~ 96 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIP 96 (140)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCcEEEEEeCCCCCC----HHHHHHHHHhc--CCEEEEEEe
Confidence 4578999999999876 79999999997 667776543
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.39 E-value=0.0074 Score=49.58 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=30.2
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 214 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 214 (590)
..+.|||+|.+.++|..|.+.++.. ....++|+.|-.|.
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 4589999999999999999877643 34457777776664
No 62
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.37 E-value=0.023 Score=48.11 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=64.7
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 130 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~ 130 (590)
...+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|-
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~~----------------------------------- 44 (115)
T 3lqv_A 6 EVNRILYIRNLPYKIT----AEEMYDIFGKY--GPIRQIRVGNTP----------------------------------- 44 (115)
T ss_dssp TCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEECST-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeCC-----------------------------------
Confidence 3467999999999886 78999999987 667776654210
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccC--CCCceeee
Q 007784 131 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 208 (590)
Q Consensus 131 ~rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 208 (590)
...|.|||+|.+..+|..|.+.++.. ....+.|.
T Consensus 45 --------------------------------------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 45 --------------------------------------------ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp --------------------------------------------TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred --------------------------------------------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 11368999999999999999977654 33456677
Q ss_pred eCCCCCCeeeCCcCcchHHHHHHH
Q 007784 209 DAPESRELIWNNLNIKFFQRQIRQ 232 (590)
Q Consensus 209 ~AP~P~DI~W~NL~~~~~~r~~R~ 232 (590)
.|-.+.+- +|+.....+..++.
T Consensus 81 ~a~~~~~~--~~~~~~~~~~~l~~ 102 (115)
T 3lqv_A 81 YYNANRAF--QKMDTKKKEEQLKL 102 (115)
T ss_dssp ECCHHHHT--TTSCHHHHHHHHHH
T ss_pred EecCChhh--hhhhHhHhHHHHHH
Confidence 66543322 45554444444433
No 63
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.37 E-value=0.012 Score=50.10 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=25.8
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
.+.++|.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 14 r~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~ 47 (115)
T 3beg_B 14 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYAD 47 (115)
T ss_dssp ---CCEEEEECCSSCC----TTHHHHHHGGG--SCEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEE
Confidence 3568999999999886 58899999987 5666554
No 64
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.36 E-value=0.018 Score=48.40 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=26.4
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 89 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v 89 (590)
....+|.|.|||.+.+ +++|+++|+++ |.|.++
T Consensus 29 ~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v 61 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQ----ESELNEIFGPF--GPMKEV 61 (108)
T ss_dssp CSCSEEEECSSCTTCC----HHHHHHHHTTT--SCCCEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEE
Confidence 4578999999999886 78999999887 455444
No 65
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.35 E-value=0.024 Score=48.81 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=29.4
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....||.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 33 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~ 69 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDY 69 (124)
T ss_dssp SSCEEEEEESCCSSCC----HHHHHHHHHTT--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 3467999999999876 79999999987 5677776543
No 66
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.34 E-value=0.018 Score=50.21 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=31.1
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+...+|.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 44 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d 81 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVYD 81 (129)
T ss_dssp CCSSCBCEETCTTSCC----HHHHHHHHTTT--SCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 4568999999999876 78999999987 67888776653
No 67
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.29 E-value=0.02 Score=48.35 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=27.0
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
+..|.|||+|.+.++|..|.+.++.. ....++|+.|-
T Consensus 63 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 63 KPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp SBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred CeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 45689999999999999999876543 23345565543
No 68
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.27 E-value=0.031 Score=49.03 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=30.3
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
..+||.|.|||.+++ +++|+++|+++ |.|.+|.+.+
T Consensus 41 ~~~~l~V~nLp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 76 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVD----EVQLRQLFERY--GPIESVKIVC 76 (139)
T ss_dssp TTSEEEEESCSTTCC----HHHHHHHHHHH--SCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 457999999999886 79999999998 6788887655
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.24 E-value=0.0097 Score=49.31 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=26.3
Q ss_pred ccceEEEEecCHHHHHHHHHhcccCC--C-CceeeeeC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQL--V-DTWTVSDA 210 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~-~~~~v~~A 210 (590)
..|.|||+|.+..+|..|.+.++... . ..+.|..|
T Consensus 53 ~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 53 TKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 45789999999999999998776432 2 44566655
No 70
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.019 Score=47.00 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=26.2
Q ss_pred CCcccEEEEcCCCC-CCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 50 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 50 ~~s~yTVlV~~IP~-~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
.+...||.|.|||. +.+ +++|+++|+++ |.|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t----~~~l~~~F~~~--G~v~~v~ 42 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQIN 42 (96)
T ss_dssp --CCEEEEEESSTTSCCC----HHHHHHHHTTT--CCCCEEE
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEE
Confidence 34568999999997 776 79999999987 5565443
No 71
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=96.18 E-value=0.039 Score=45.27 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=28.1
Q ss_pred CCcccEEEEcCCCC-CCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 50 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 50 ~~s~yTVlV~~IP~-~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
.+...||.|.|||. +.. +++|+++|+++ |.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t----~~~L~~~F~~~--G~v~~v~ 54 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQIN 54 (97)
T ss_dssp CCTTCEEEEESCCSSCCC----HHHHHHHHGGG--SCEEEEE
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEE
Confidence 45678999999996 776 79999999987 5666554
No 72
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.12 E-value=0.0083 Score=48.90 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=22.4
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhh
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 81 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~ 81 (590)
+..++|.|.|||.+.+ +++|+++|+++
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~ 39 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVS----IDEILDFFYGY 39 (95)
T ss_dssp --CEEEEEECCCTTCC----HHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc
Confidence 4568999999999886 79999999876
No 73
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.09 E-value=0.0089 Score=48.22 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=27.8
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
+||.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 2 ~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 35 (90)
T 2ki2_A 2 RNIYVGNLVYSAT----SEQVKELFSQF--GKVFNVKLIY 35 (90)
T ss_dssp EEEEEEEECTTSS----HHHHTTTHHHH--TCCSEEEECC
T ss_pred cEEEECCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 5899999999886 78999999998 6677776544
No 74
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.08 E-value=0.022 Score=49.54 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=33.2
Q ss_pred cceEEEEecCHHHHHHHHHhcccCC--CCceeeeeCCCCCCeeeC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWN 219 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DI~W~ 219 (590)
.|.|||+|.+..+|..|.+.++... ...++|..|-.++|...+
T Consensus 72 rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 72 SGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp CCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 4679999999999999998776542 346778888777776654
No 75
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.07 E-value=0.04 Score=52.16 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=68.6
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 132 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~r 132 (590)
..||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|..
T Consensus 15 ~~tlfVgnLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~------------------------------------ 52 (213)
T 4f02_A 15 MASLYVGDLHPDVT----EAMLYEKFSPA--GPILSIRVCRDMI------------------------------------ 52 (213)
T ss_dssp CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT------------------------------------
T ss_pred CcEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEecccC------------------------------------
Confidence 47999999999886 79999999998 6788887665320
Q ss_pred CcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeC
Q 007784 133 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 210 (590)
Q Consensus 133 P~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 210 (590)
..+..|.|||+|.+..+|..|.+.++... ...+++..+
T Consensus 53 ----------------------------------------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 53 ----------------------------------------TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp ----------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------------------------------CCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 01345799999999999999998765432 223344433
Q ss_pred CC--------CCCeeeCCcCcchHHHHHHHH
Q 007784 211 PE--------SRELIWNNLNIKFFQRQIRQY 233 (590)
Q Consensus 211 P~--------P~DI~W~NL~~~~~~r~~R~~ 233 (590)
.. ...|.=.||..+..+..++.+
T Consensus 93 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 123 (213)
T 4f02_A 93 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 123 (213)
T ss_dssp CCCTHHHHHCTTEEEEESCCTTCCHHHHHHH
T ss_pred cccccccccccccceECCcccccHHHHHHHH
Confidence 32 234666777766555555554
No 76
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.05 E-value=0.016 Score=47.86 Aligned_cols=37 Identities=11% Similarity=0.373 Sum_probs=27.6
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....+||.|.|||.+.+ +++|+++|+++ | |.++.+.+
T Consensus 16 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 52 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 52 (100)
T ss_dssp ----CEEEESCCSSCCS----SSHHHHHSCSS--C-EEEEECSC
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEEe
Confidence 34578999999999886 58899999987 6 87776543
No 77
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.04 E-value=0.043 Score=45.82 Aligned_cols=36 Identities=11% Similarity=0.280 Sum_probs=28.3
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 91 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~ 91 (590)
...+||.|.|||.+.+ +++|+++|+++.+ .|.++.+
T Consensus 6 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~G~-~v~~v~i 41 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKK----REEILEEIAKVTE-GVLDVIV 41 (109)
T ss_dssp CCSEEEEEECCCTTSC----HHHHHHHHHHHST-TEEEEEC
T ss_pred cCCCEEEEeCCCCcCC----HHHHHHHHHHhcC-CceEEEE
Confidence 4568999999999876 7999999999832 2766653
No 78
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.99 E-value=0.052 Score=50.13 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=32.0
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+..|
T Consensus 10 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 48 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETT----DESLRSHFEQW--GTLTDCVVMRD 48 (196)
T ss_dssp CGGGGEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEEc
Confidence 34678999999999886 79999999998 67887776553
No 79
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.95 E-value=0.025 Score=52.18 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=59.6
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 131 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~ 131 (590)
...||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|..
T Consensus 87 ~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~----------------------------------- 125 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDYDRS----------------------------------- 125 (177)
T ss_dssp TCEEEEEECCCSCCC----HHHHHHHHHHT--SCCSEEEECCCTT-----------------------------------
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECCC-----------------------------------
Confidence 357999999999886 79999999987 5677666543210
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccC--CCCceeeee
Q 007784 132 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 209 (590)
Q Consensus 132 rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 209 (590)
....|.|||+|.+..+|..|.+.++.. ....+.|+.
T Consensus 126 ------------------------------------------g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 126 ------------------------------------------GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp ------------------------------------------SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred ------------------------------------------CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 123578999999999999999876543 234567777
Q ss_pred CCCCCCee
Q 007784 210 APESRELI 217 (590)
Q Consensus 210 AP~P~DI~ 217 (590)
|..+....
T Consensus 164 a~~~~~~~ 171 (177)
T 2f3j_A 164 VASQIDLE 171 (177)
T ss_dssp ESSGGGGC
T ss_pred ecCCCCCC
Confidence 66544333
No 80
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.033 Score=45.87 Aligned_cols=33 Identities=9% Similarity=0.295 Sum_probs=26.4
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 89 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v 89 (590)
+...||.|.|||.+.+ +++|+++|+++ |.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~ 57 (101)
T 2la4_A 25 PRVTTAYIGNIPHFAT----EADLIPLFQNF--GFILDF 57 (101)
T ss_dssp SSCCEEEEESCCTTCC----HHHHHHHHHTT--SCCSEE
T ss_pred CCCCEEEEcCCCcccC----HHHHHHHHHhC--CCEEEE
Confidence 4568999999999886 79999999987 555444
No 81
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.92 E-value=0.054 Score=50.91 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=29.8
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 27 ~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 62 (216)
T 2qfj_A 27 IMSRVYVGSIYYELG----EDTIRQAFAPF--GPIKSIDMSW 62 (216)
T ss_dssp HHTEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEECC
T ss_pred cCCEEEEECCCCCCC----HHHHHHHHHhC--CCEEEEEEee
Confidence 357999999999886 79999999998 6788776544
No 82
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.92 E-value=0.025 Score=47.76 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=27.7
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 90 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~ 90 (590)
.++.||.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 8 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~ 41 (111)
T 1whx_A 8 RSKTVILAKNLPAGTL----AAEIQETFSRF--GSLGRVL 41 (111)
T ss_dssp EEEEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 3568999999999876 79999999987 5676554
No 83
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.91 E-value=0.059 Score=47.93 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=28.6
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 91 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~ 91 (590)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 71 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i 105 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGN----KTELERAFGYY--GPLRSVWV 105 (150)
T ss_dssp TTSCEEEEESCCSCCS----CHHHHHHHHHH--SCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEE
Confidence 4568999999999886 58899999998 66776653
No 84
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.89 E-value=0.014 Score=49.56 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=25.7
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCcee
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY 87 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~ 87 (590)
...+||.|.|||.+.+ +++|+++|+++ |.|.
T Consensus 6 ~~~~~lfVgnLp~~~t----e~~L~~~F~~~--G~i~ 36 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDID----EDEITASFRRF--GPLV 36 (114)
T ss_dssp SCCCCEEEECCCTTCC----HHHHHHHTTTT--CCCC
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCEE
Confidence 3468999999999886 79999999987 5554
No 85
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=95.88 E-value=0.038 Score=49.88 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=30.4
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..++|.|.|||.+.+ +++|+++|+++.+..|.+|.+++|
T Consensus 54 ~~~~lfVgnLp~~~t----e~~L~~~F~~~G~i~v~~v~i~~d 92 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTT----DQQLIQVIRSIGVYDVVELKFAEN 92 (156)
T ss_dssp --CEEEEECCCTTCC----HHHHHHHHHHTTCCCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHHCCccEEEEEEEec
Confidence 357999999999886 799999999983227888876654
No 86
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=95.88 E-value=0.039 Score=44.92 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=30.1
Q ss_pred cceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCCCCe
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESREL 216 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DI 216 (590)
.|.|||+|.+..+|..|.+.++.. ....+.++.|-.+.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 478999999999999999876653 3445677777666553
No 87
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.87 E-value=0.044 Score=49.15 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=30.1
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 68 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~v~~~~i~~ 104 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIPR 104 (158)
T ss_dssp CBCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEee
Confidence 4468999999999886 79999999988 6787776444
No 88
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=95.85 E-value=0.026 Score=49.54 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=28.7
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
...+||.|.|||.+.+ +++|+++|+++ |.|.+|.+.
T Consensus 45 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~ 80 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIP 80 (135)
T ss_dssp GGCCCEEEECCCSSCH----HHHHHHHHGGG--SCCSEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 3467999999999875 79999999997 567666543
No 89
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=95.85 E-value=0.016 Score=46.54 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=29.4
Q ss_pred cceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 214 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 214 (590)
.|.|||+|.+.++|..|.+.++.. ....++++.||...
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 478999999999999999877543 34567788887543
No 90
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.71 E-value=0.07 Score=52.25 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=43.6
Q ss_pred ceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCCCCeeeCCcCcchHHHHHHHH
Q 007784 178 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNNLNIKFFQRQIRQY 233 (590)
Q Consensus 178 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DI~W~NL~~~~~~r~~R~~ 233 (590)
|.|||+|.+..+|..|.+.+... ....+.+..|.+..-|.=.||.....+..++.+
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~ 116 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQA 116 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHH
Confidence 79999999999999999866543 344677888888888888899877656555554
No 91
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=95.62 E-value=0.045 Score=46.37 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=27.1
Q ss_pred cceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 212 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 212 (590)
.|.|||+|++.++|..|.+.+... +...+.|+.|..
T Consensus 67 rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 67 DGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp SCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 479999999999999999876543 334566776643
No 92
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.61 E-value=0.019 Score=51.98 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=30.1
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhC--------CC-ceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY--------PD-TFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~--------p~-~v~~v~~~~d 94 (590)
.++||.|.|||.+.+ +++|+++|+++. |+ .|.++.+..+
T Consensus 3 ~~~~l~V~nLp~~~t----~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~ 50 (172)
T 2g4b_A 3 SARRLYVGNIPFGIT----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 50 (172)
T ss_dssp GGGEEEEESCCTTCC----HHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT
T ss_pred cccEEEEcCCCcccC----HHHHHHHHHHHhhhcccccCCCCceeeeEecCC
Confidence 358999999999886 799999999972 11 5777766554
No 93
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.47 E-value=0.094 Score=42.75 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=28.5
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 213 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 213 (590)
..|.|||+|.+..+|..|.+.++.. +...+.|+.|-++
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3478999999999999999877654 3445777766544
No 94
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.40 E-value=0.063 Score=44.17 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=27.9
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 213 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 213 (590)
..+.|||+|.+.++|..|.+.++.. ....+.|+.|-.+
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 4578999999999999999876543 2345666666443
No 95
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.39 E-value=0.078 Score=52.34 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=44.9
Q ss_pred cceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCCCCeeeCCcCcchHHHHHHHHH
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYV 234 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DI~W~NL~~~~~~r~~R~~~ 234 (590)
.|.|||+|.+.++|..|.+.++.. ....+.+..+|...-|.=.||..+..+.-++.++
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f 116 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELV 116 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHH
Confidence 368999999999999999876543 3446778888888888889998876666555543
No 96
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.36 E-value=0.078 Score=49.77 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=30.0
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.++|.|.|||.+.. +++|+++|+++ |.|.++.+..|
T Consensus 125 ~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 160 (216)
T 2qfj_A 125 FNRIYVASVHQDLS----DDDIKSVFEAF--GKIKSATLARD 160 (216)
T ss_dssp SCEEEEECCCTTCC----HHHHHHHHTTS--SCEEEEEEEEC
T ss_pred CcEEEEeCCCCcCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 47999999999876 79999999987 67888876653
No 97
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.31 E-value=0.014 Score=54.39 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=32.2
Q ss_pred cccEEEEcCCCC-CCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 52 QQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 52 s~yTVlV~~IP~-~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
++.||.|.|||. +.. +++|+++|+++ |.|.++.+.+|.
T Consensus 2 ~~~~l~v~nlp~~~~~----~~~l~~~F~~~--G~i~~v~i~~~~ 40 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKILFNK 40 (198)
T ss_dssp CCCEEEEECCCSSSCC----HHHHHHHHHTT--CCCSEEECSTTC
T ss_pred CCcEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEEEeCC
Confidence 457999999999 776 79999999987 668888888765
No 98
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.22 E-value=0.11 Score=46.67 Aligned_cols=36 Identities=3% Similarity=0.152 Sum_probs=29.8
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
...+|.|.|+|.+.. +++|+++|+++ |.|.++.+.+
T Consensus 94 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~~~~ 129 (175)
T 3nmr_A 94 EDRKLFIGMISKKCT----ENDIRVMFSSF--GQIEECRILR 129 (175)
T ss_dssp GGSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCeEEEcCCCCcCC----HHHHHHHHHhC--CCEEEEEEEE
Confidence 568999999999876 79999999987 5687776554
No 99
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.09 E-value=0.1 Score=43.35 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=28.1
Q ss_pred cceEEEEecCHHHHHHHHHhcccC--CCC-ceeeeeCCCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ--LVD-TWTVSDAPES 213 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~-~~~v~~AP~P 213 (590)
.|.|||+|.+..+|..|.+.++.. ... .+.|..|-+-
T Consensus 61 ~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 61 KGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp CCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 378999999999999999976543 333 5777777543
No 100
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.09 E-value=0.063 Score=51.68 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=30.0
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..+||.|.|||.+++ +++|+++|+++-...|.+|.+.+|
T Consensus 67 ~~~~lfVgnL~~~~t----e~~L~~~F~~~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 67 KRIALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFEN 105 (229)
T ss_dssp --CEEEEESCCTTCC----HHHHHHHHHTTTCCCEEEEEEEEC
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHHHCCcceEEEEEEec
Confidence 456899999999886 799999999872117888877764
No 101
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.08 E-value=0.039 Score=45.41 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=26.9
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
+..|.|||+|.+.++|..|.+ ++.. ....+.|..|-
T Consensus 56 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 56 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 456899999999999999998 6543 23456666653
No 102
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.06 E-value=0.048 Score=46.02 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=27.2
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
+..|.|||+|.+..+|..|.+.++.. ....+.|+.|-
T Consensus 65 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 65 RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 35689999999999999999876543 23445665553
No 103
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.00 E-value=0.076 Score=42.86 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=26.9
Q ss_pred cceEEEEecCHHHHHHHHHhccc-C--CCCceeeeeCCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHA-Q--LVDTWTVSDAPE 212 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~-~--~~~~~~v~~AP~ 212 (590)
.+.|||+|++.++|..|.+.++. . ....++|+.|-.
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 47899999999999999987765 2 334566666543
No 104
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=93.97 E-value=0.084 Score=41.97 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=33.5
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
....+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|.
T Consensus 8 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~ 47 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTS----KKDLKDYFTKF--GEVVDCTIKMDP 47 (87)
T ss_dssp CSCTTEEEEECCCTTCC----HHHHHHHHTTT--SCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEeecC
Confidence 35678999999999886 79999999987 679999887653
No 105
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=93.96 E-value=0.016 Score=52.67 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=28.3
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
+..|.|||+|.+..+|..|.+.++.. ....+.|..|.
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 45789999999999999999976543 23456676663
No 106
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=93.90 E-value=0.096 Score=42.34 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=33.0
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~~l~v~nlp~~~~----~~~l~~~F~~~--G~i~~v~i~~~ 51 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVR----EEILYELFLQA--GPLTKVTICKD 51 (95)
T ss_dssp TTGGGEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 35678999999999876 79999999998 67888887765
No 107
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=93.90 E-value=0.17 Score=53.54 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=60.3
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 132 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~r 132 (590)
..||.|.|||.+++ +++|+++|+++ |.|..|.++.|..
T Consensus 102 ~~~lfV~nL~~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~------------------------------------ 139 (437)
T 3pgw_S 102 FKTLFVARVNYDTT----ESKLRREFEVY--GPIKRIHMVYSKR------------------------------------ 139 (437)
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEeeccCC------------------------------------
Confidence 46999999999886 68999999997 6787776654310
Q ss_pred CcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeC
Q 007784 133 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 210 (590)
Q Consensus 133 P~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 210 (590)
..+..|.|||+|.+..+|..|.+.++... ...+.|..|
T Consensus 140 ----------------------------------------tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 140 ----------------------------------------SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred ----------------------------------------CCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 01234789999999999999998876543 335666666
Q ss_pred CCCCCeee
Q 007784 211 PESRELIW 218 (590)
Q Consensus 211 P~P~DI~W 218 (590)
-....=.|
T Consensus 180 ~~~~~~~~ 187 (437)
T 3pgw_S 180 RGRTVKGW 187 (437)
T ss_pred CCCCCCCC
Confidence 54333344
No 108
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.48 E-value=0.12 Score=41.67 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=32.8
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.+..+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 12 ~~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 50 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVYD 50 (95)
T ss_dssp CCGGGCEEEESCCSSCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEEc
Confidence 35678999999999876 78999999997 67888887764
No 109
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=93.45 E-value=0.29 Score=48.14 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=31.2
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+.+.+|.|.|+|.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 93 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 130 (284)
T 3smz_A 93 PTDALLCVANLPPSLT----QQQFEELVRPF--GSLERCFLVYS 130 (284)
T ss_dssp CCSCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEcCCCCcCC----HHHHHHHHHhc--CCeeEEEEEee
Confidence 5678999999999886 79999999997 56887776553
No 110
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=93.34 E-value=0.1 Score=41.57 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=31.8
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+.+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 5 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (89)
T 3ucg_A 5 DARSIYVGNVDYGAT----AEELEAHFHGC--GSVNRVTILCD 41 (89)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHGGG--CCEEEEEEEES
T ss_pred cCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEec
Confidence 457999999999886 79999999997 67888888775
No 111
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.18 E-value=0.11 Score=43.32 Aligned_cols=39 Identities=5% Similarity=0.159 Sum_probs=33.1
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
...+||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|.
T Consensus 9 ~~~~~lfV~~Lp~~~t----e~~L~~~F~~~--G~v~~v~i~~d~ 47 (103)
T 1s79_A 9 VKNRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRRTL 47 (103)
T ss_dssp SGGGCEEEECCCTTCC----HHHHHHHHHTS--SCEEEEEEECCC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhhc--CCEEEEEEEECC
Confidence 4568999999999876 79999999987 679999887653
No 112
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=93.14 E-value=0.087 Score=42.45 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=31.8
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.++.+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 8 ~~~~~~l~V~~Lp~~~t----e~~L~~~F~~~--G~i~~v~i~~~ 46 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMT----AEELQQFFCQY--GEVVDVFIPKP 46 (89)
T ss_dssp ---CCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECCSS
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEeeC
Confidence 45678999999999886 79999999997 77999887764
No 113
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.06 E-value=0.16 Score=42.55 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=33.0
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+...+|.|.|||.+.+ +++|+++|+++ |+|.+|.+..|
T Consensus 14 ~~~~~LfV~nLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 51 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 51 (105)
T ss_dssp CCCCEEEECSCCTTSC----HHHHHHHHHHH--CCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEcC
Confidence 4568999999999876 79999999998 78999998864
No 114
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.01 E-value=0.16 Score=39.94 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=32.1
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
.+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+..
T Consensus 9 ~~~~~~l~V~~l~~~~t----~~~l~~~f~~~--G~i~~~~~~~ 46 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTIT----ETDLRNHFYQF--GEIRTITVVQ 46 (85)
T ss_dssp CSSCCCEEEECCTTTSC----HHHHHHHHHTT--SCEEEEEEEG
T ss_pred CCCccEEEEcCCCCCCC----HHHHHHHHHhC--CCEeEEEEEC
Confidence 35678999999999876 79999999997 6688888775
No 115
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.01 E-value=0.15 Score=42.97 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=32.3
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 14 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 52 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTT----DASLRKYFEGF--GDIEEAVVITD 52 (116)
T ss_dssp SCSSSEEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEESCC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeeEEEEEEc
Confidence 34678999999999876 79999999987 67888877654
No 116
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.70 E-value=0.15 Score=44.00 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=31.8
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCC--CceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP--DTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p--~~v~~v~~~~d 94 (590)
..++|.|.|||.+.+ +++|+++|+++-+ +.+.+|.+++|
T Consensus 22 ~~~~v~V~nLp~~~t----e~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 22 NQVIVRMRGLPFTAT----AEEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp SCCEEEECSCCTTCC----HHHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhhCCccCCcceEEEEEC
Confidence 458999999999886 7999999999854 34677888775
No 117
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=92.58 E-value=0.34 Score=40.22 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHH-hhhh-----------hccccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeCC
Q 007784 154 NEKIKEIIPKLEAEQ-KITL-----------KEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 211 (590)
Q Consensus 154 ~~~l~~l~~~I~~~~-~~~~-----------~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 211 (590)
++..+++.+++.++- ++.. ..+..|.|||+|.+..+|..|.+.++... ...+.++.+|
T Consensus 33 ~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 33 QEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 334445556666655 4331 12347999999999999999998876542 3345666665
No 118
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=92.52 E-value=0.15 Score=43.13 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=31.6
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 38 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~~ 75 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFT----DTDLASTFLPF--GNVISAKVFID 75 (118)
T ss_dssp CCSEEEEEECSCTTCC----HHHHHHHTTTS--CEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEeC
Confidence 4568999999999876 79999999987 67888876654
No 119
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.47 E-value=0.15 Score=41.44 Aligned_cols=38 Identities=8% Similarity=0.215 Sum_probs=32.2
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
...||.|.|||.+.. +++|+++|+++ |.|.++.+.+|.
T Consensus 4 ~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~ 41 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTT----EETLKGVFSKV--GAIKSCTISKKK 41 (98)
T ss_dssp CCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecC
Confidence 457999999999876 79999999987 678888877754
No 120
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.39 E-value=0.18 Score=41.65 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=33.0
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....++|.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 13 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTT----QETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSSEECCBSCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 35678999999999876 79999999997 67888887765
No 121
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=92.31 E-value=0.21 Score=41.26 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=33.2
Q ss_pred CCCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 49 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 49 ~~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.....++|.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 64 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVHYD 64 (107)
T ss_dssp CCCCSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEC
Confidence 345678999999999886 79999999987 67888887764
No 122
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=92.27 E-value=0.19 Score=41.24 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.....||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMD----ETEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEEC
Confidence 44678999999999886 79999999998 67888887764
No 123
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=92.25 E-value=1.2 Score=43.41 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=25.7
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHH----HHHhhhCCCceeEEEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMV 91 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~----~~F~~~~p~~v~~v~~ 91 (590)
...+||.|.|||.+.+ +++|+ ++|+++ |.|.+|.+
T Consensus 7 ~~~~~l~V~nlp~~~~----~~~l~~~L~~~F~~~--G~i~~v~~ 45 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIK----KDELKKSLYAIFSQF--GQILDILV 45 (282)
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHHhcc--CCeEEEEE
Confidence 4468999999999886 57766 677665 56766653
No 124
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=92.23 E-value=0.53 Score=45.80 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=30.1
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
...+|.|.|+|.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 95 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 131 (261)
T 3sde_A 95 HGAALTVKNLSPVVS----NELLEQAFSQF--GPVEKAVVVVD 131 (261)
T ss_dssp CSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEE
T ss_pred cCCcccccCCCCCCC----HHHHHHHHHhc--CCeEEEEeeeC
Confidence 357999999998875 79999999987 67888776653
No 125
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.14 E-value=0.25 Score=41.15 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.5
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
+...+|.|.|||.+.+ +++|+++|+++ |.|.+|.+..
T Consensus 13 ~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~V~~v~i~~ 49 (104)
T 1wex_A 13 SVSPVVHVRGLCESVV----EADLVEALEKF--GTICYVMMMP 49 (104)
T ss_dssp CCCSEEEEESCCSSCC----HHHHHHHHTTT--SCEEEEEEET
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEC
Confidence 4568999999999876 79999999997 7898888765
No 126
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.09 E-value=0.16 Score=42.40 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=32.3
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 26 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 64 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIFN 64 (109)
T ss_dssp TTCCCEEEEESCCTTCC----HHHHHHHGGGT--CCCSCEEECCB
T ss_pred CCCCCEEEEECCCCcCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 45678999999999876 79999999998 67888877654
No 127
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.08 E-value=0.26 Score=39.98 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=32.4
Q ss_pred CCCcccEEEEcCCCCCCCCCChHHHHH----HHHhhhCCCceeEEEEecc
Q 007784 49 VRPQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 49 ~~~s~yTVlV~~IP~~~~~~~~~~~L~----~~F~~~~p~~v~~v~~~~d 94 (590)
......+|.|.|||.+.+ +++|+ ++|+++ |.|.+|.+..|
T Consensus 5 ~~~~~~~l~V~nL~~~~~----~~~l~~~l~~~F~~~--G~v~~v~i~~~ 48 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLS----RKELQQLLQEAFARH--GKVKSVELSPH 48 (96)
T ss_dssp CCSSCEEEEEESCCTTSC----HHHHHHHHHHHHHHH--SCEEEEEECSC
T ss_pred CCCCCCEEEEECCCCCCC----HHHHHHHHHHhcccc--CcEEEEEEEeC
Confidence 345678999999999886 68888 999988 67888887654
No 128
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.99 E-value=0.24 Score=41.49 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=32.0
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~~ 50 (114)
T 2do0_A 13 RLGSTVFVANLDYKVG----WKKLKEVFSMA--GVVVRADILED 50 (114)
T ss_dssp CCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEC
Confidence 4568999999999876 79999999987 67888887664
No 129
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.78 E-value=0.15 Score=40.15 Aligned_cols=37 Identities=5% Similarity=0.110 Sum_probs=31.1
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 4 ~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 40 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTT----DQDLVKLCQPY--GKIVSTKAILD 40 (85)
T ss_dssp CCCEEEEESCCTTCC----HHHHHTTSTTT--SCEEEEEEECC
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 457999999999886 79999999987 67888887664
No 130
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=91.69 E-value=0.31 Score=40.34 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=31.5
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
.+.+.+|.|+|+|.+.. +++|++.|+++ |.|.+|.+.
T Consensus 18 ~~ps~~l~V~NLp~~~t----e~~L~~lF~~f--G~V~~v~i~ 54 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVV----EADLVEALQEF--GPISYVVVM 54 (100)
T ss_dssp CCCCSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEE
Confidence 35568999999999876 79999999997 789888775
No 131
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.65 E-value=0.52 Score=39.45 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhh--------hhccccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCCCCeeeCC
Q 007784 156 KIKEIIPKLEAEQKIT--------LKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNN 220 (590)
Q Consensus 156 ~l~~l~~~I~~~~~~~--------~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DI~W~N 220 (590)
+.+++++++.++=++. .+....|.|||+|.+..+|..|.+.++.. ....+.+..|.+..|..++.
T Consensus 35 ~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 35 VLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp HHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred HHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 3455666666543332 11235799999999999999999887654 34467788887766665544
No 132
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.64 E-value=0.14 Score=40.85 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=31.1
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+..|
T Consensus 4 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 40 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMT----EDELREFFSQY--GDVMDVFIPKP 40 (88)
T ss_dssp CCCEEEEESCCSSSC----HHHHHHHSTTT--SCCCEEECCSS
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEEecC
Confidence 458999999999886 79999999987 67888887654
No 133
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.61 E-value=0.26 Score=39.38 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=31.4
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....++|.|.|||.+.+ +++|+++|+++ .|.++.+.+|
T Consensus 7 ~~~~~~l~v~nLp~~~t----~~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVT----EKNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCCEEEEECCCSSCC----HHHHHHHHTTS---CCSEEEEEEC
T ss_pred CCCccEEEEECCCCCCC----HHHHHHHHhhC---CceEEEEEEC
Confidence 34578999999999886 79999999987 4778887765
No 134
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=91.55 E-value=0.38 Score=47.53 Aligned_cols=36 Identities=8% Similarity=0.221 Sum_probs=28.9
Q ss_pred cccEEEEcCCCCC-CCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 52 QQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 52 s~yTVlV~~IP~~-~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
...+|.|.|||.+ .. +++|+++|+++ |.|.++.+.+
T Consensus 209 ~~~~l~v~nlp~~~~t----~~~l~~~F~~~--G~v~~v~i~~ 245 (292)
T 2ghp_A 209 EGREIMIRNLSTELLD----ENLLRESFEGF--GSIEKINIPA 245 (292)
T ss_dssp TTTEEEEEEECTTTCC----HHHHHHHHGGG--SCEEEEECCS
T ss_pred CCceEEEECCCcccCC----HHHHHHHHhcc--CCeeEEEEEe
Confidence 4579999999998 65 79999999987 6777776443
No 135
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.39 E-value=0.3 Score=40.08 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=32.1
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....+||.|.|||.+.. +++|+++|+++ + |.+|.+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g-i~~v~i~~~ 49 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTV----QGDIDAIFKDL--S-IRSVRLVRD 49 (103)
T ss_dssp SSSCEEEEEESCCTTCC----HHHHHHHTTTS--C-EEEEEEEEC
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhC--C-ceEEEEeec
Confidence 34578999999999886 79999999997 4 888888765
No 136
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.36 E-value=0.27 Score=40.63 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=32.0
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
+...+|.|.|||.+.+ +++|+++|+++ |.|.+|.+..|
T Consensus 13 ~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~v~~v~i~~~ 50 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVT----ETEVIALGLPF--GKVTNILMLKG 50 (101)
T ss_dssp SCCSEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEECC
Confidence 4568999999998876 79999999987 78988887754
No 137
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.34 E-value=0.25 Score=42.24 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=32.8
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.+...+|.|.|||.+.+ +++|+++|+++ |.|.+|.+..|
T Consensus 28 ~~ps~~LfVgNLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 66 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 66 (119)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHHHTTT--SCCCEEEEEGG
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEeCC
Confidence 34568999999999876 79999999987 78999988764
No 138
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=91.20 E-value=0.13 Score=39.46 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 55 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 55 TVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
||.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 1 ~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 33 (75)
T 1iqt_A 1 KIFVGGLSPDTP----EEKIREYFGGF--GEVESIELPM 33 (75)
T ss_dssp CEEESCCCSSCC----HHHHHHHHHHH--SCCSEECCCC
T ss_pred CEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 689999999886 79999999998 5677776544
No 139
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=91.13 E-value=0.21 Score=41.76 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=30.6
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 23 ~~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~~ 60 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMRD 60 (109)
T ss_dssp ---CCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHcc--CCeEEEEEEEC
Confidence 3568999999999886 79999999987 67888887764
No 140
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.00 E-value=0.21 Score=41.89 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=31.2
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 24 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 60 (114)
T 2cq4_A 24 DARTVFCMQLAARIR----PRDLEDFFSAV--GKVRDVRIISD 60 (114)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECCS
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEeEEEEEec
Confidence 357999999999886 79999999987 67888887664
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.86 E-value=0.16 Score=39.07 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 55 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 55 TVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 2 ~l~v~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 35 (77)
T 1uaw_A 2 KMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMRD 35 (77)
T ss_dssp CEEEESCCSSCC----SHHHHHHHTTT--SCCCCEEEECC
T ss_pred EEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEecC
Confidence 799999999887 58899999987 56777776654
No 142
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.57 E-value=0.33 Score=40.64 Aligned_cols=38 Identities=8% Similarity=0.272 Sum_probs=32.0
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 23 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~~ 60 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMD----EQELENMLKPF--GQVISTRILRD 60 (114)
T ss_dssp CCTTEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 4568999999999876 79999999987 67888887764
No 143
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.50 E-value=0.28 Score=40.47 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=30.4
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeE-EEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR-SMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~-v~~~~d 94 (590)
...++|.|.|||.+.+ +++|+++|+++ |.|.+ |.+.+|
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~~v~i~~~ 51 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCS----KEEIVQFFSGL--EIVPNGMTLPVD 51 (104)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHTTTC--CEEEEEEECCBC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCcceeEEEEEC
Confidence 4578999999999886 79999999987 66765 655554
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.38 E-value=0.33 Score=39.18 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=30.3
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEE-EEec
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS-MVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v-~~~~ 93 (590)
...++|.|.|||.+.+ +++|+++|+++ |.|.++ .+..
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~~~i~~ 50 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQ----WEVLDSLLVQY--GVVESCEQVNT 50 (96)
T ss_dssp CSCCCEEEEEECSSSC----HHHHHHHHHHH--SCEEEEEEECC
T ss_pred CCCCEEEEEcCCCCCC----HHHHHHHHHhc--CCeEEEEEeec
Confidence 3468999999999886 79999999998 678877 4544
No 145
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.31 E-value=0.35 Score=39.15 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=31.0
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
+...+|.|.|||.+.+ +++|+++|+++ |.|.++.+..
T Consensus 15 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~~~~ 51 (97)
T 1why_A 15 NPTTRLWVGGLGPNTS----LAALAREFDRF--GSIRTIDHVK 51 (97)
T ss_dssp CCCSCEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEECS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEeC
Confidence 4568999999999876 79999999997 6788887654
No 146
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.19 E-value=0.23 Score=41.86 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=30.6
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCce-eEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF-YRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v-~~v~~~~d 94 (590)
...+||.|.|||.+.+ +++|+++|+++ |.| .+|.+.+|
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g~v~~~v~i~~d 51 (114)
T 2cpy_A 13 SAKVCAHITNIPFSIT----KMDVLQFLEGI--PVDENAVHVLVD 51 (114)
T ss_dssp SCCCEEEEESCCTTSC----HHHHHHHTTTS--CCCSTTEEECCC
T ss_pred CCccEEEEeCcCCcCC----HHHHHHHHHhC--CCcCCeEEEEEC
Confidence 4578999999999886 79999999987 666 66766554
No 147
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.04 E-value=0.27 Score=40.83 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=31.6
Q ss_pred CcccEEEEcCCCC-CCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~-~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
....+|.|.|||. +.+ +++|+++|+++ |.|.+|.+.+
T Consensus 13 ~p~~~l~V~nLp~~~~t----e~dL~~lF~~f--G~V~~v~i~~ 50 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNL----RYQLLQLVEPF--GVISNHLILN 50 (102)
T ss_dssp CCCCEEEEESCCCSSSH----HHHHHTTTGGG--SCEEEEEECS
T ss_pred CCCCEEEEeCCCCCcCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 3468999999998 775 79999999998 7899998775
No 148
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=89.99 E-value=0.25 Score=41.95 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=31.6
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCC-CceeEEEEeccc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVVTNN 95 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p-~~v~~v~~~~d~ 95 (590)
...+||.|.|||.+.+ +++|+++|+++-+ +.|.+|.+++|.
T Consensus 15 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~G~~~~v~~v~i~~~~ 56 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCS----IEDVQNFLSDCTIHDGVAGVHFIYTR 56 (118)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHTTTSCBTTGGGGEEEEECS
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHcCCccCceeEEEEECC
Confidence 4578999999999886 7999999998732 127777777643
No 149
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.51 E-value=0.2 Score=42.05 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=30.2
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..++|.|.|||.+.+ +++|+++|+++ .|.+|.+++|
T Consensus 15 ~~~~v~V~nLp~~~t----e~dl~~~F~~~---~v~~v~i~~d 50 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAM----ENDVRDFFHGL---RVDAVHLLKD 50 (109)
T ss_dssp HHHEEEEECCCSSCC----HHHHHHHTTTS---CCCEEEECCC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHhccC---CeeEEEEEEC
Confidence 468999999999886 79999999987 4778887664
No 150
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=89.51 E-value=0.39 Score=39.16 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=30.1
Q ss_pred EEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 55 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 55 TVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
||.|.|||.+.+ +++|+++|+++ |.|.++.+..|
T Consensus 2 ~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 35 (101)
T 2hvz_A 2 KVYVGNLGTGAG----KGELERAFSYY--GPLRTVWIARN 35 (101)
T ss_dssp EEEEECCCSSCS----HHHHHHHHHHH--CCCSEEEEESS
T ss_pred EEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 799999999876 79999999998 67889988877
No 151
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=89.43 E-value=0.22 Score=38.18 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 55 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 55 TVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
+|.|.|||.+.. +++|+++|+++ |.|.++.+..
T Consensus 1 ~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 33 (75)
T 2mss_A 1 KIFVGGLSVNTT----VEDVKHYFEQF--GKVDDAMLMF 33 (75)
T ss_dssp CEEEECCCSSCC----HHHHHHHHHTT--SCCSEECCCB
T ss_pred CEEEecCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 478999999886 79999999997 6677776544
No 152
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=89.38 E-value=0.26 Score=41.94 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=31.7
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..+||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 35 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 71 (124)
T 2jwn_A 35 DKRSVYVGNVDYGST----AQDLEAHFSSC--GSINRITILCD 71 (124)
T ss_dssp HHTEEEEEEECTTCC----HHHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEec
Confidence 357999999999876 79999999997 67988888775
No 153
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=89.22 E-value=0.58 Score=42.15 Aligned_cols=39 Identities=5% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....+||.|.|||.++. +++|+++|+++ |.|.+|.+..|
T Consensus 69 ~~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~i~~~ 107 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLNLD 107 (165)
T ss_dssp CC-CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcC--CCEEEEEEEec
Confidence 34568999999999876 79999999998 67988887764
No 154
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.14 E-value=0.37 Score=40.48 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=30.9
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.++|.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 27 ~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 27 FRKLFIGGLSFETT----EESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HTEEEEECCTTCCC----HHHHHHHHTSS--CCCSEEEEECC
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 57999999999876 79999999987 67888887765
No 155
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.78 E-value=0.38 Score=39.65 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=29.7
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
...++|.|.|||.+.+ +++|+++|+++ + +.+|.+++|
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G-~~~v~i~~d 49 (102)
T 1wez_A 13 TTGHCVHMRGLPYRAT----ENDIYNFFSPL--N-PMRVHIEIG 49 (102)
T ss_dssp SSSCEEEEESCCTTCC----HHHHHHSSCSC--C-CSEEEEEES
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--C-ceEEEEEEC
Confidence 4568999999999886 79999999986 3 347777764
No 156
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=88.50 E-value=0.41 Score=42.64 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=32.1
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
.+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 3 ~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~ 39 (167)
T 2cjk_A 3 SCKMFIGGLNWDTT----EDNLREYFGKY--GTVTDLKIMKDP 39 (167)
T ss_dssp GGEEEECSCCTTCC----HHHHHHHHTTT--CCEEEEECCCCT
T ss_pred CcEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEECC
Confidence 57999999999886 79999999997 679999888763
No 157
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=88.40 E-value=0.58 Score=39.59 Aligned_cols=55 Identities=25% Similarity=0.172 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhh--------hccccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeCC
Q 007784 157 IKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 211 (590)
Q Consensus 157 l~~l~~~I~~~~~~~~--------~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 211 (590)
.+++++++.++-++.. .....|.|||+|.+.++|..|.+.++... ...+.++.+|
T Consensus 27 ~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 27 DTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 4566666766655431 12246999999999999999999887542 3344454443
No 158
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=88.07 E-value=0.28 Score=40.79 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=30.8
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCC-CceeEEEEecc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVVTN 94 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p-~~v~~v~~~~d 94 (590)
....++|.|.|||.+.+ +++|+++|+++.+ +.|.+|.+.+|
T Consensus 8 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~g~~~~v~~v~i~~~ 49 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCT----MEDVLNFFSDCRIRNGENGIHFLLN 49 (107)
T ss_dssp CSSCCEEEEECCCSSCC----SHHHHHHTTTSCBTTTTTTEECCCC
T ss_pred CCCccEEEEeCCCCCCC----HHHHHHHHHhcCCcCCcceEEEEEC
Confidence 34678999999999887 5899999998632 22666765553
No 159
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=87.43 E-value=0.39 Score=42.10 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=31.5
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCc---eeEEEEeccc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDT---FYRSMVVTNN 95 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~---v~~v~~~~d~ 95 (590)
...++|.|.|||.+.+ +++|+++|+++ |. |.+|.+++|-
T Consensus 42 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~--G~v~~v~~v~i~~d~ 83 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCS----VEDVQNFLSDC--TIHDGAAGVHFIYTR 83 (136)
T ss_dssp CTTCEEEEESCCTTCC----HHHHHHHTTTC--CCSSSSTTEEEEECS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcCceeEEEEEECC
Confidence 4578999999999886 79999999997 44 6777777643
No 160
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=87.11 E-value=0.51 Score=40.70 Aligned_cols=38 Identities=8% Similarity=0.151 Sum_probs=29.9
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeE--EEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR--SMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~--v~~~~d 94 (590)
....||.|.|||.+.+ +++|+++|+++ |.|.. |.+++|
T Consensus 21 ~~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~v~~~~v~i~~d 60 (131)
T 2m2b_A 21 NANDTIILRNLNPHST----MDSILGALAPY--AVLSSSNVRVIKD 60 (131)
T ss_dssp CCCCEEEECSCCTTCC----SHHHHHHHGGG--CCCCTTTEECCBC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcceeeEEEEEc
Confidence 3467999999999887 58999999998 56644 666654
No 161
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=86.96 E-value=0.67 Score=39.99 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=29.5
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCcee--EEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY--RSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~--~v~~~~d 94 (590)
..+++|.|.|||.+.+ +++|+++|+++ + +. +|.+.+|
T Consensus 40 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~--~-i~~~~v~i~~d 78 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCT----KEEIVQFFSGL--E-IVPNGITLPVD 78 (126)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHTTTS--C-EEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcC--C-ceeeEEEEEEC
Confidence 4578999999999886 79999999987 3 55 6766554
No 162
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=86.81 E-value=0.56 Score=36.49 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=28.0
Q ss_pred cEEEEcCCCCCCCCCC--hHHHHHHHHhhhCCCceeEEEEe
Q 007784 54 FAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~--~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
.||.|.|||.+..++. .+++|+++|+++ |.|.++.+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~ 40 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP 40 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEec
Confidence 6899999998774210 268999999987 678887644
No 163
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=86.77 E-value=1.2 Score=36.99 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=27.2
Q ss_pred ccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 211 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 211 (590)
..|.|||+|++..+|..|.+.++.+. ...+++..+|
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 46899999999999999999887653 3345555444
No 164
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.62 E-value=0.99 Score=37.16 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=27.3
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCCCCceeeeeCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP 211 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP 211 (590)
+..|.|||+|.+..+|..|.+.........++|+.|-
T Consensus 52 ~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 52 KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 3568999999999999999987544334455666553
No 165
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=86.48 E-value=0.36 Score=42.48 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=29.2
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
...++|.|.|||.+.+ +++|+++|+++ + +.+|.+++|
T Consensus 44 ~~~~~lfV~nLp~~~t----e~dL~~~F~~~--G-i~~v~i~~d 80 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKAT----ENDIYNFFSPL--N-PVRVHIEIG 80 (139)
T ss_dssp -CCCCEECCSCCTTCC----HHHHHHHHCSC--C-CSEEECCCS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEEEC
Confidence 4568999999999886 79999999987 4 557776554
No 166
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.36 E-value=0.56 Score=39.61 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=30.3
Q ss_pred CcccEEEEcCCCCC-CCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 51 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 51 ~s~yTVlV~~IP~~-~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
+...+|.|.|||.+ .+ +++|+++|+++ |.|.+|.+.
T Consensus 23 ~p~~~l~V~NLp~~~~t----e~~L~~lF~~f--G~V~~v~i~ 59 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYS----DSAVLKLAEPY--GKIKNYILM 59 (112)
T ss_dssp CCCCEEEEESCCCSSCC----SHHHHTTTTTT--SCCSEEEEE
T ss_pred CCCCEEEEeCCCCccCC----HHHHHHHHHhc--CCEEEEEEe
Confidence 34689999999997 76 58899999987 778888875
No 167
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=85.34 E-value=0.77 Score=42.67 Aligned_cols=36 Identities=6% Similarity=0.203 Sum_probs=31.1
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
.+||.|.|+|.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 109 ~~~l~V~nLp~~~t----~~~L~~~F~~~--G~v~~v~i~~~ 144 (193)
T 2voo_A 109 NRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRRT 144 (193)
T ss_dssp HTEEEEECCCTTCC----HHHHHHHHTTS--CCEEEEEEEEC
T ss_pred cCEEEecCCCCcCC----HHHHHHHHhcC--CCEEEEEEEEC
Confidence 48999999999875 79999999987 67999988764
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=85.23 E-value=1.1 Score=34.99 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=30.7
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhh----C----C-CceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAI----Y----P-DTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~----~----p-~~v~~v~~~~d 94 (590)
..+||.|.|||.+.+ +++|+++|+++ . | +.|.++.+..|
T Consensus 5 ~~~~l~V~nLp~~~t----~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 5 SARRLYVGNIPFGIT----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGEEEEESCCTTCC----HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 468999999999886 79999999987 2 1 16888877644
No 169
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.20 E-value=1.2 Score=35.68 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.5
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 89 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v 89 (590)
...++|.|.|||.+.+ +++|+++|+++ |.|.+|
T Consensus 6 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVD----SAQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TTCCEEEEECCCTTCC----HHHHHHHGGGT--SCEEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 3467999999999886 79999999987 667765
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=84.74 E-value=1 Score=42.70 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=33.6
Q ss_pred CcccEEEEcCCCC-CCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 51 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 51 ~s~yTVlV~~IP~-~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
+...||.|.|||. +.. +++|+++|+++ |.|.+|.+.+|-
T Consensus 32 ~~~~~l~V~nLp~~~~t----e~~L~~~F~~~--G~i~~v~i~~~~ 71 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKILFNK 71 (229)
T ss_dssp CCCSEEEEESCCTTTCC----HHHHHHHHHHH--TCEEEEEECCTT
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEEEEECC
Confidence 4578999999998 775 79999999998 679999988775
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=84.42 E-value=1.5 Score=38.56 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=32.1
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
...++|.|+|+|.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 85 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp TTCEEEEEESCCTTCC----HHHHHHHHTTS--TTEEEEEEEEC
T ss_pred CCCceEEECCCCCCCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 4568999999999886 79999999887 67888887765
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=83.44 E-value=1.3 Score=40.48 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=31.6
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..++|.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 103 ~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTE----EHHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp CCSEEEEECCTTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CcceEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEeec
Confidence 458999999999876 79999999987 67988888765
No 173
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.07 E-value=0.58 Score=39.05 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=31.3
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHH---HHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVD---SYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~---~~F~~~~p~~v~~v~~~~d 94 (590)
.+..+|.|.|||.+.. +++|+ ++|+++ |.|.++.+..|
T Consensus 13 ~~~~~l~V~nLp~~~~----~~~l~~~~~~F~~~--G~i~~v~i~~~ 53 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLA----DPEVLKRPEYFGKF--GKIHKVVINNS 53 (111)
T ss_dssp CCSSCEEEEEECTTTC----CHHHHHSTTTTTTT--SCEEEEEEECC
T ss_pred cCCCEEEEECCCCCCC----HHHHHHHHHHhhcc--CCEEEEEEecC
Confidence 4567999999999887 47888 999987 67988887654
No 174
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=82.39 E-value=2.1 Score=34.36 Aligned_cols=37 Identities=5% Similarity=-0.089 Sum_probs=31.3
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
.....+.|+||+.+.+ ++.|++.|.++ |.|.++++..
T Consensus 5 ~~~~wL~VgNL~~~~t----e~~L~~lF~q~--G~V~~~~l~~ 41 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQID----GPTLRTLCMQH--GPLVSFHPYL 41 (89)
T ss_dssp CCCCEEEEECCCTTCC----CHHHHHHHHHH--SCEEEEEEET
T ss_pred CccceEEEeCCCccCC----HHHHHHHHHhh--CCEEEEEEcC
Confidence 4568999999999887 69999999999 6798888743
No 175
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=82.23 E-value=1.4 Score=33.42 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.6
Q ss_pred cccceEEEEecCHHHHHHHHH
Q 007784 175 KQLGAALVFFTSRVAAASAAQ 195 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q 195 (590)
+..|.|||+|++.++|..|.+
T Consensus 39 ~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 39 RHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp TSCBEEEEECSCHHHHHHHHS
T ss_pred CcCcEEEEEECCHHHHHHHHH
Confidence 457899999999999999887
No 176
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=81.90 E-value=1.6 Score=38.60 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=31.8
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....+|.|.|+|.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 87 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 124 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTIT----DDQLDTIFGKY--GSIVQKNILRD 124 (168)
T ss_dssp TTTCEEEEESCCTTCC----HHHHHHHHTSS--SCEEEEEEEEC
T ss_pred CCCCCEEEeCCCCCCC----HHHHHHhhhcC--CcEEEEEEEEc
Confidence 4568999999999876 79999999987 67888887764
No 177
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=81.82 E-value=1.4 Score=35.25 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=28.8
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 212 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 212 (590)
+..|.|||+|.+..+|..|.+.++.. ....+.++.|.+
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 51 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 45789999999999999999876543 334567777643
No 178
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=81.68 E-value=2.1 Score=38.04 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=31.4
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
...+|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 93 ~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 129 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKD 129 (172)
T ss_dssp TTTCEEEECCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCEEEEEcCCCcCC----HHHHHHHHHhc--CCceEEEEEec
Confidence 358999999999876 79999999987 67888887765
No 179
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.55 E-value=2.2 Score=34.04 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=29.3
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 213 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 213 (590)
+.++.|||+|.+..+|..|.+.++.. +...+.|+.|.+.
T Consensus 52 ~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 52 SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 34555999999999999999876543 3456778877655
No 180
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.46 E-value=1.7 Score=35.15 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=27.2
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
+..+.|||+|.+.++|..|.+.++.. +...+.|+.|-
T Consensus 51 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 51 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 34589999999999999999876543 23445666553
No 181
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.03 E-value=1.7 Score=35.02 Aligned_cols=35 Identities=29% Similarity=0.081 Sum_probs=26.7
Q ss_pred cceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
.+.|||+|++.++|..|.+.++.. ....++|+.|-
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 679999999999999999876543 33456666653
No 182
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=81.02 E-value=2.1 Score=37.64 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=31.8
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
....+|.|.|+|.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 86 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 123 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMT----QKELEQLFSQY--GRIITSRILVD 123 (167)
T ss_dssp GTTCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCcEEECCCCCcCC----HHHHHHHHHhc--CCEeEEEEEec
Confidence 3468999999999876 79999999998 67888887764
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=80.67 E-value=1.4 Score=36.58 Aligned_cols=37 Identities=11% Similarity=-0.094 Sum_probs=29.0
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 212 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 212 (590)
..|.|||+|.+..+|..|.+.++.+ ....+.+..|++
T Consensus 55 ~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 55 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred CcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 4689999999999999999988765 334566777653
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=80.49 E-value=1.4 Score=43.28 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=32.0
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
....||.|.|||.+.+ +++|+++|+++ |.|.+|.+..|.
T Consensus 39 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~ 77 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYN----QNKVYKYFKHC--GPIIHVDVADSL 77 (292)
T ss_dssp ---CEEEEEEECTTCC----HHHHHHHHGGG--SCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECC
Confidence 4578999999999886 79999999998 679999988864
No 185
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.20 E-value=0.69 Score=39.39 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=25.7
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 88 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~ 88 (590)
...++|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~ 54 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAE----NKHVIDFFKKL--DIVED 54 (124)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHSCSS--CBCTT
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCccc
Confidence 3468999999999886 79999999987 44443
No 186
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.99 E-value=1.9 Score=34.66 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=26.0
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 210 (590)
...+.|||+|.+.++|..|.+.++.. +...+.|+.|
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34689999999999999999976543 2334555444
No 187
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.89 E-value=2 Score=34.48 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=27.3
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 212 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 212 (590)
..+.|||+|++..+|..|.+.++.. ....+.|+.|-.
T Consensus 48 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 48 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 4579999999999999999876543 234566666543
No 188
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=79.86 E-value=2.7 Score=38.19 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=31.8
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
...++|.|.|+|.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 112 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~v~~~~~~~~ 149 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKD 149 (198)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTB--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--CCccEEEEeec
Confidence 3468999999999876 79999999987 67888887765
No 189
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.24 E-value=2.8 Score=33.61 Aligned_cols=35 Identities=20% Similarity=0.016 Sum_probs=26.8
Q ss_pred cceEEEEecCHHHHHHHHHhcccC--C--CCceeeeeCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ--L--VDTWTVSDAP 211 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~--~--~~~~~v~~AP 211 (590)
.+.|||+|++.++|..|.+.++.. . ...++|+.|-
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 679999999999999999876543 2 3456676654
No 190
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.19 E-value=1.6 Score=36.26 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=26.8
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
..|.|||+|.+.++|..|.+.++.. ....++|+.|-
T Consensus 62 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 62 PSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred CCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 3479999999999999999976543 23456666554
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=79.17 E-value=2.1 Score=40.03 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=32.1
Q ss_pred cccEEEEcCCC-CCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 52 QQFAVLVRDLP-DLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 52 s~yTVlV~~IP-~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
+..||.|.||| .+++ +++|++.|+++ |.|.+|.+.+|.
T Consensus 3 ~~~~l~V~nL~~~~~~----~~~L~~~F~~~--G~v~~v~i~~~~ 41 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMN----CDRVFNVFCLY--GNVEKVKFMKSK 41 (205)
T ss_dssp CCSEEEEECCCTTTCC----HHHHHHHHTTT--SCEEEEEECTTS
T ss_pred CCCEEEEeCCCcccCC----HHHHHHHHHhc--CCeEEEEEecCC
Confidence 45799999999 6665 78999999987 789999988764
No 192
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=78.90 E-value=2 Score=37.19 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=30.9
Q ss_pred cEEEEcCC----CCCCCCCChHHHHHHHHhhhCCCceeEEEEeccch
Q 007784 54 FAVLVRDL----PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 96 (590)
Q Consensus 54 yTVlV~~I----P~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~ 96 (590)
-.|.|.|+ |.+.. ++.|++||+++ |+|.++.+..|-.
T Consensus 3 ~kI~VgnL~~~~~~~tt----e~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQ----DISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCC----HHHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC
Confidence 37899999 98776 79999999987 6788888887743
No 193
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.56 E-value=1.6 Score=34.68 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=26.2
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 210 (590)
+..+.|||+|.+.++|..|.+.++.. ....+.|+.|
T Consensus 55 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 55 RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 44689999999999999999876543 2334555544
No 194
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=78.45 E-value=2.4 Score=39.57 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=31.4
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..+|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 103 ~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~~~i~~d 138 (213)
T 4f02_A 103 VGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVCD 138 (213)
T ss_dssp TTEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEE
T ss_pred cccceECCcccccH----HHHHHHHHhhc--CCeEEEEeecc
Confidence 46899999999886 79999999998 67999988875
No 195
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.94 E-value=1.5 Score=33.27 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=25.8
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC-CCCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ-LVDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~-~~~~~~v~~A 210 (590)
+..|.|||+|++.++|..|.+..... +...+.++.|
T Consensus 40 ~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 40 RSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp SCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 45789999999999999999876521 2234555544
No 196
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=79.18 E-value=0.46 Score=39.92 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=25.6
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeE
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 88 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~ 88 (590)
...++|.|.|||.+.. +++|+++|+++ |.|.+
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 36 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 36 (116)
Confidence 3468999999999886 68899999987 45544
No 197
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.44 E-value=1.9 Score=34.10 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=25.6
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 210 (590)
+..|.|||+|++.++|..|.+ ++.. ....+.|..|
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 48 NKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 457899999999999999999 5443 2334555554
No 198
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=77.39 E-value=2.7 Score=33.91 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=25.3
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 210 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 210 (590)
..+.|||+|.+.++|..|.+.++.. ....+.|+.|
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 5789999999999999999876543 2233455443
No 199
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=77.07 E-value=1.9 Score=33.29 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.0
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ 200 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~ 200 (590)
+..|.|||+|.+..+|..|.+.++..
T Consensus 45 ~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 45 KTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp BCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred cEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 45789999999999999999876543
No 200
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=77.01 E-value=1.8 Score=32.74 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.6
Q ss_pred cccceEEEEecCHHHHHHHHHh
Q 007784 175 KQLGAALVFFTSRVAAASAAQS 196 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~ 196 (590)
+..|.|||+|++.++|..|.+.
T Consensus 39 ~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 39 KRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SSCCCEEEECSSSHHHHHHHTT
T ss_pred CcCCEEEEEECCHHHHHHHHHh
Confidence 4578999999999999999885
No 201
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=75.57 E-value=2.4 Score=34.67 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=26.5
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 210 (590)
+..+.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 68 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 68 RSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999765432 234555554
No 202
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=75.34 E-value=2.5 Score=33.10 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=25.8
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
+..|.|||+|.+.++|..|. .++.. ....+.|+.|-
T Consensus 46 ~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 46 HPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp SCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 45789999999999999998 54433 23345666653
No 203
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=75.29 E-value=2.9 Score=33.89 Aligned_cols=38 Identities=18% Similarity=0.022 Sum_probs=26.5
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 213 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 213 (590)
+..|.|||+|++.++|..|. .++.. ....+.|+.|-.+
T Consensus 54 ~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 54 KFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp SEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCC
T ss_pred ccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCC
Confidence 34789999999999999998 44432 2335666665443
No 204
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=75.26 E-value=2.1 Score=34.06 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=26.1
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 210 (590)
+..+.|||+|++.++|..|.+.++... ...+.|+.|
T Consensus 55 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 55 KPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp CEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 347899999999999999998765432 234555544
No 205
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=74.92 E-value=1.8 Score=38.30 Aligned_cols=36 Identities=8% Similarity=0.205 Sum_probs=29.9
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEecc
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 94 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d 94 (590)
..+|.|.|+|.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 87 ~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~~ 122 (167)
T 2cjk_A 87 TGKIFVGGIGPDVR----PKEFEEFFSQW--GTIIDAQLMLD 122 (167)
T ss_dssp CEEEEEEEECTTCC----HHHHHHHHHTT--SCCSEEECCCS
T ss_pred CCeEEECCCCCCCC----HHHHHHHHHhC--ccEEEEEEEEc
Confidence 56999999999886 79999999987 67888876554
No 206
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.17 E-value=1.6 Score=34.31 Aligned_cols=38 Identities=18% Similarity=-0.022 Sum_probs=24.5
Q ss_pred ccceEEEEecCHHHHHHHHHhcccCCCCceeeeeCCCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPES 213 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP~P 213 (590)
..|.|||+|++.++|+.+.+.-..-+...+.+..|..+
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCC
Confidence 46899999999999976544322223445566655433
No 207
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=74.12 E-value=3.2 Score=40.35 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=30.4
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
+...||.|.|||.+.. +++|+++|+++ |.|.++.+.
T Consensus 205 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~i~~v~~~ 240 (282)
T 3pgw_A 205 PPNHILFLTNLPEETN----ELMLSMLFNQF--PGFKEVRLV 240 (282)
T ss_pred CCCCEEEEeCCCCcCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 4568999999999875 79999999987 678888765
No 208
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.96 E-value=3 Score=32.34 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred ccceEEEEecCHHHHHHHHHhc
Q 007784 176 QLGAALVFFTSRVAAASAAQSL 197 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~ 197 (590)
..|.|||+|.+.++|..|.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHh
Confidence 3689999999999999999876
No 209
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.58 E-value=3.1 Score=34.93 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=30.4
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC----CCCceeeeeCCCCCCee
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAPESRELI 217 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP~P~DI~ 217 (590)
..+.|||+|.+.++|..|.+.++.. ....+.|..|-...++.
T Consensus 61 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 61 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 4589999999999999999876432 33456777766555544
No 210
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=73.55 E-value=4.6 Score=34.16 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=28.1
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 213 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 213 (590)
+..|.|||+|++.++|..|.+.+... ....+.|..|-.+
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 34689999999999999999876543 2345666665433
No 211
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=73.17 E-value=2.4 Score=33.88 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=24.0
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhh
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 81 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~ 81 (590)
....+||.|.|||.+.+ +++|+++|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t----~~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNIT----EDELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCC----HHHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhhC
Confidence 34578999999999886 79999999886
No 212
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=72.45 E-value=2.3 Score=33.19 Aligned_cols=22 Identities=9% Similarity=0.320 Sum_probs=19.3
Q ss_pred cccceEEEEecCHHHHHHHHHh
Q 007784 175 KQLGAALVFFTSRVAAASAAQS 196 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~ 196 (590)
+..|.|||+|.+..+|..|.+.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 51 RSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp CEEEEEEEEESSTHHHHHHHHS
T ss_pred ccccEEEEEECCHHHHHHHHHh
Confidence 4478999999999999999875
No 213
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.35 E-value=3.6 Score=33.54 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=28.6
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeCCCCCCeee
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIW 218 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DI~W 218 (590)
+..|.|||+|++.++|..|.+. +... ...+.|..| .+.++.|
T Consensus 55 ~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~ 98 (104)
T 1wg5_A 55 RSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRT 98 (104)
T ss_dssp CBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCC
T ss_pred CcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHH
Confidence 4578999999999999999987 3322 224556555 3455444
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.17 E-value=5.2 Score=32.92 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=28.7
Q ss_pred ccEEEEcCCCCCCCCCChHHHHHHHHhh---hCCCceeEEEEe
Q 007784 53 QFAVLVRDLPDLPKGQSRKEQVDSYFKA---IYPDTFYRSMVV 92 (590)
Q Consensus 53 ~yTVlV~~IP~~~~~~~~~~~L~~~F~~---~~p~~v~~v~~~ 92 (590)
..+|.|+|+|++.. ++.|+-||++ -.+|.|.++...
T Consensus 8 ~~~I~V~~lPp~~~----~e~L~LYFEn~rrsGGG~V~~v~~~ 46 (104)
T 2dhx_A 8 GVAVEVRGLPPAVP----DELLTLYFENRRRSGGGPVLSWQRL 46 (104)
T ss_dssp CCEEEEESCCTTSC----HHHHHHHHHCTTTTCCCCEEEEEEE
T ss_pred ccEEEEECCCCCCC----hhHheEEEeCCCcCCCceeeEEEEc
Confidence 46999999999875 6899999998 345678877543
No 215
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.73 E-value=5.3 Score=32.94 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=20.9
Q ss_pred ccceEEEEecCHHHHHHHHHhccc
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHA 199 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~ 199 (590)
..|.|||+|.+..+|..|.+.++.
T Consensus 65 ~~g~afV~f~~~~~a~~A~~~l~g 88 (114)
T 1x5o_A 65 SRGVGFARMESTEKCEAVIGHFNG 88 (114)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHBT
T ss_pred cceEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999999999987654
No 216
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=71.56 E-value=4.1 Score=37.16 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=30.6
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCC-ceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~-~v~~v~~~~ 93 (590)
+...||.|.|+|.+.. +++|+++|+++ | .|.++.+..
T Consensus 118 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~~v~~v~i~~ 155 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKFFQ 155 (198)
T ss_dssp CCCCEEEECCCCTTCC----HHHHHHHHHHT--TSCCCEEEESS
T ss_pred CCccEEEEeCCCCCCC----HHHHHHHHHHc--CCCceEEEEEe
Confidence 3468999999999875 79999999998 6 788887654
No 217
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.39 E-value=2.8 Score=32.51 Aligned_cols=25 Identities=40% Similarity=0.363 Sum_probs=21.3
Q ss_pred cccceEEEEecCHHHHHHHHHhccc
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHA 199 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~ 199 (590)
...|.|||+|.+.++|..|.+.++.
T Consensus 45 ~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 45 KCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp SCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CcCcEEEEEECCHHHHHHHHHHhcC
Confidence 3478999999999999999987654
No 218
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.15 E-value=3.1 Score=34.34 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=27.1
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 210 (590)
...|.|||+|.+.++|..|.+.++.. +...+.|+.|
T Consensus 67 ~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 67 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999876543 2345566655
No 219
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.87 E-value=5.9 Score=33.31 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=28.5
Q ss_pred cccEEEE--cCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 52 QQFAVLV--RDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 52 s~yTVlV--~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
...++.| -|+|.+.+ +++|+++|+++ |.|.+|.+.
T Consensus 24 pt~~L~V~Ng~L~~~~t----e~~L~~~F~~f--G~v~~v~i~ 60 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVS----RNQLLPVLEKC--GLVDALLMP 60 (114)
T ss_dssp CCSEEEEETCTGGGTCC----HHHHHHHHHHH--SCEEEEECC
T ss_pred CCCEEEEECCCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 3578999 55998876 79999999998 678888754
No 220
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.80 E-value=3.2 Score=33.49 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=23.5
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhh
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 81 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~ 81 (590)
...++|.|.|||.+.+ +++|+++|+++
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~ 39 (101)
T 2fc9_A 13 GESKTLVLSNLSYSAT----EETLQEVFEKA 39 (101)
T ss_dssp CCCSEEEEESCCTTCC----HHHHHHHCSSC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC
Confidence 4578999999999876 79999999885
No 221
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.55 E-value=4.1 Score=33.81 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=26.3
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC-CCCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ-LVDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~-~~~~~~v~~A 210 (590)
+..+.|||+|.+.++|..|.+.+... ....+.|+.|
T Consensus 57 ~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 57 KSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp CCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred ccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 35689999999999999999876531 2234566665
No 222
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.51 E-value=4.9 Score=33.03 Aligned_cols=35 Identities=14% Similarity=-0.070 Sum_probs=25.5
Q ss_pred cceEEEEecCHHHHHHHHHhcccC----CCCceeeeeCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 211 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 211 (590)
.|.|||+|++.++|..|.+.++.. ....+.|..|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 51 KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 589999999999999998865432 23445565553
No 223
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=70.45 E-value=4.3 Score=32.58 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=28.8
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 210 (590)
.+.|.|||+|.++++|..|.+.++..+ ...++|..|
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 368999999999999999999876543 345677777
No 224
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.21 E-value=4.7 Score=33.19 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.1
Q ss_pred cccceEEEEecCHHHHHHHHHhccc
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHA 199 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~ 199 (590)
+..+.|||+|.+.++|..|.+.++.
T Consensus 54 ~~~g~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 54 KSRGIGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3468999999999999999987654
No 225
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=69.70 E-value=3 Score=33.11 Aligned_cols=36 Identities=19% Similarity=-0.013 Sum_probs=22.9
Q ss_pred ccceEEEEecCHHHHHHHHHhcccCCCCceeeeeCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP 211 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP 211 (590)
..|.|||+|++..+|..+...-..-+.....+..|-
T Consensus 47 srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC
T ss_pred CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcC
Confidence 568999999999999854332222234455565553
No 226
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.56 E-value=3.3 Score=33.82 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.3
Q ss_pred cccceEEEEecCHHHHHHHHHh
Q 007784 175 KQLGAALVFFTSRVAAASAAQS 196 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~ 196 (590)
+..|.|||+|.++++|..|.+.
T Consensus 53 ~~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 53 RVTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp CEEEEEEEECSSSHHHHHHHTT
T ss_pred CEeeEEEEEECCHHHHHHHHHh
Confidence 4578999999999999999964
No 227
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.52 E-value=4 Score=32.46 Aligned_cols=35 Identities=11% Similarity=-0.050 Sum_probs=25.0
Q ss_pred eEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCCC
Q 007784 179 AALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 214 (590)
Q Consensus 179 ~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 214 (590)
.|||+|.+..+|..|.+ ++.. ....+.|+.|.+..
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 89999999999999999 5443 23345566655433
No 228
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=69.49 E-value=6.7 Score=32.26 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=30.6
Q ss_pred cccEEEEcCCC--CCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 52 QQFAVLVRDLP--DLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 52 s~yTVlV~~IP--~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
...+|.++|+. .++.+ +.+++|++.|+++ |.|.+|.+..|.
T Consensus 7 ~s~~l~l~Nm~~~~~l~d-d~~~dl~~~f~~~--G~V~~v~i~~~~ 49 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDE-DLEVETKEECEKY--GKVGKCVIFEIP 49 (105)
T ss_dssp CCSEEEEESSSCSCCC----CHHHHHHHGGGG--SCEEEEEEEECS
T ss_pred CCCEEEEEcCCChHHhhH-HHHHHHHHHHHhc--CCEEEEEEecCC
Confidence 35799999996 33332 3478999999988 789999998864
No 229
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.46 E-value=4.1 Score=33.51 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=27.0
Q ss_pred cceEEEEecCHHHHHHHHHhcccC----CCCceeeeeCCCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAPES 213 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP~P 213 (590)
.+.|||+|++.++|..|.+.++.. ....+.|..|-..
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 478999999999999999876532 3345666666543
No 230
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=69.20 E-value=4.2 Score=33.31 Aligned_cols=22 Identities=27% Similarity=0.287 Sum_probs=19.8
Q ss_pred ccccceEEEEecCHHHHHHHHH
Q 007784 174 EKQLGAALVFFTSRVAAASAAQ 195 (590)
Q Consensus 174 ~~~~~~AFVtF~s~~~a~~a~q 195 (590)
.+..|.|||+|.+..+|..|.+
T Consensus 52 g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 52 GKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp STTCSEEEEEBSSHHHHHHHHT
T ss_pred CCEeeEEEEEECCHHHHHHHHH
Confidence 3567899999999999999998
No 231
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.93 E-value=4.2 Score=33.28 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=25.5
Q ss_pred cceEEEEecCHHHHHHHHHhcccC----CCCceeeeeCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 211 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 211 (590)
.|.|||+|++.++|..|.+.++.. ....+.|..|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 589999999999999998865421 23345666554
No 232
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=68.87 E-value=3.9 Score=38.10 Aligned_cols=37 Identities=8% Similarity=-0.045 Sum_probs=29.2
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCce--eEEEEecc
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF--YRSMVVTN 94 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v--~~v~~~~d 94 (590)
...||.|.|||.+.. +++|+++|+++ |.| .++.+..|
T Consensus 122 p~~~l~v~NLp~~~t----~~~L~~~F~~~--G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVT----EENFFEICDEL--GVKRPTSVKVFSG 160 (205)
T ss_dssp CCSEEEEEEECTTCC----HHHHHHHHHHH--TCCCCSEEEECSC
T ss_pred CcceEEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEEEEcC
Confidence 356899999999876 79999999997 555 67765543
No 233
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=68.43 E-value=3.5 Score=34.29 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.0
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ 200 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~ 200 (590)
+..|.|||+|.+.++|..|.+.++..
T Consensus 80 ~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 80 LSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp CCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred CcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 45789999999999999999876543
No 234
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=67.47 E-value=3.5 Score=34.90 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=28.2
Q ss_pred ccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeCCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 212 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~ 212 (590)
..|.|||+|.+..+|..|.+.++.+. ...+.+..+|+
T Consensus 70 ~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 70 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred ceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 45899999999999999999887653 33455665553
No 235
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=67.22 E-value=5 Score=32.91 Aligned_cols=35 Identities=20% Similarity=0.076 Sum_probs=25.9
Q ss_pred ccceEEEEecCHHHHHHHHHhcccCC----CCceeeeeC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQL----VDTWTVSDA 210 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~~----~~~~~v~~A 210 (590)
..|.|||+|++.++|..|.+.+.... ...+.|+.|
T Consensus 56 ~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 56 KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 46899999999999999998765432 334555544
No 236
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=66.81 E-value=6.2 Score=33.05 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=25.8
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
...|.|||+|.+.++|..|. .++.. ....+.|+.|-
T Consensus 76 ~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 76 HPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp SCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45789999999999999999 44332 23456666654
No 237
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=66.52 E-value=4.7 Score=34.90 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=26.8
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 210 (590)
+..|.|||+|.+..+|..|.+.++.. ....+.|..|
T Consensus 90 ~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 90 RMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred CcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45789999999999999999876543 2334556554
No 238
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=66.18 E-value=6.7 Score=36.93 Aligned_cols=36 Identities=8% Similarity=0.126 Sum_probs=30.2
Q ss_pred cccEEEEcCCCCCCCCCChHHHHHHHHhhhCCC-ceeEEEEec
Q 007784 52 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVVT 93 (590)
Q Consensus 52 s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~-~v~~v~~~~ 93 (590)
...||.|.|+|.+.. +++|+++|+++ | .|.++.+..
T Consensus 150 ~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~~i~~v~i~~ 186 (229)
T 2adc_A 150 PSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKFFQ 186 (229)
T ss_dssp SCSEEEEECCCTTCC----HHHHHHHHHTT--SCCEEEEEECS
T ss_pred CCCEEEEeCCCccCC----HHHHHHHHHHc--CCCeeEEEEEE
Confidence 368999999999875 79999999998 6 788887654
No 239
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.09 E-value=5.4 Score=33.01 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=25.7
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
...|.|||+|.+..+|..|.+. ... ....+.|+.|-
T Consensus 67 ~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 67 RSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp SCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4568999999999999999886 221 23345666553
No 240
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=65.82 E-value=8.5 Score=34.07 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=39.1
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCC--------CCCeeeCCcCcchHHHHHHHHHH
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE--------SRELIWNNLNIKFFQRQIRQYVV 235 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~--------P~DI~W~NL~~~~~~r~~R~~~~ 235 (590)
+..|.|||+|.+.++|..|.+ ++.. ....+.+..|.. ..-|.=.||..+..+..++.++.
T Consensus 52 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 121 (175)
T 1fje_B 52 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE 121 (175)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCT
T ss_pred ccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHH
Confidence 457899999999999999996 4322 233455555442 23466777776655555555443
No 241
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.35 E-value=3.7 Score=33.32 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.9
Q ss_pred ccceEEEEecCHHHHHHHHHh
Q 007784 176 QLGAALVFFTSRVAAASAAQS 196 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~ 196 (590)
..+.|||+|++.++|..|.+.
T Consensus 57 ~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 57 SRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp EEEEEEEEESSTTHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHh
Confidence 468999999999999999886
No 242
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.18 E-value=5.7 Score=32.86 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=25.3
Q ss_pred cceEEEEecCHHHHHHHHHhcccC----CCCceeeeeCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 211 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 211 (590)
.|.|||+|++.++|..|.+.+... ....+.|..|.
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 589999999999999999865432 23345555553
No 243
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=64.98 E-value=6.9 Score=32.18 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=25.7
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC-CCCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ-LVDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~-~~~~~~v~~A 210 (590)
...|.|||+|.+..+|..|.+..... +...+.++.|
T Consensus 65 ~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 65 RSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp CCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 45789999999999999999865311 2334556554
No 244
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.93 E-value=4.6 Score=34.24 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=25.6
Q ss_pred cceEEEEecCHHHHHHHHHhccc----CCCCceeeeeCC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHA----QLVDTWTVSDAP 211 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~----~~~~~~~v~~AP 211 (590)
.|.|||+|++.++|..|.+.+.. -....+.|..|-
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 58999999999999999886542 133455666553
No 245
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=64.64 E-value=4.8 Score=38.66 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=31.7
Q ss_pred CcccEEEEcCCCCCCCCC-----ChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLPKGQ-----SRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~-----~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
.+..||.|.|||.+..+. ..+++|+++|+++ |.|.+|.++.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~ 177 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVE 177 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEG
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEEC
Confidence 356899999999876300 0279999999998 7899998873
No 246
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.54 E-value=3.9 Score=34.52 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=25.5
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 210 (590)
+..|.|||+|.+.++|..|.+ ++... ...+.|..|
T Consensus 65 ~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 65 KATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp SEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 457899999999999999999 54332 234556555
No 247
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=64.45 E-value=8.8 Score=34.49 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=28.0
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
.+|.|.|+|.+.+ +++|++.|+++ |.|.+|.+.
T Consensus 47 l~l~VgNL~~~vt----ed~L~~~Fs~f--G~V~~V~i~ 79 (164)
T 1sjr_A 47 LRIIVENLFYPVT----LDVLHQIFSKF--GTVLKIITF 79 (164)
T ss_dssp EEEEECSCCSCCC----HHHHHHHHHHH--SCEEEEEEE
T ss_pred EEEEEeCcCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 4677999998876 79999999998 789998863
No 248
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=64.41 E-value=4.8 Score=34.94 Aligned_cols=35 Identities=20% Similarity=0.061 Sum_probs=25.8
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 210 (590)
+..|.|||+|++.++|..|.+ ++.. ....+.|..|
T Consensus 86 ~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 86 RQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp CEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 457899999999999999998 4432 2334556655
No 249
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.90 E-value=4.9 Score=33.81 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=21.3
Q ss_pred cceEEEEecCHHHHHHHHHhcccC
Q 007784 177 LGAALVFFTSRVAAASAAQSLHAQ 200 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~~ 200 (590)
.|.|||+|.+.++|..|.+.++..
T Consensus 63 rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 63 KPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp CSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 589999999999999999887654
No 250
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.66 E-value=4.6 Score=33.09 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=19.2
Q ss_pred cccceEEEEecCHHHHHHHHH
Q 007784 175 KQLGAALVFFTSRVAAASAAQ 195 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q 195 (590)
...|.|||+|++..+|..|..
T Consensus 50 ~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 50 AFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp SCCCEEEEEESSHHHHHHHHT
T ss_pred CCccEEEEEECCHHHHHHHHH
Confidence 467999999999999999988
No 251
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=61.95 E-value=7.2 Score=32.89 Aligned_cols=42 Identities=10% Similarity=0.221 Sum_probs=32.7
Q ss_pred cccEEEEcCC--CCCCCCCChHHHHHHHHhhhCCCceeEEEEeccch
Q 007784 52 QQFAVLVRDL--PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 96 (590)
Q Consensus 52 s~yTVlV~~I--P~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~~ 96 (590)
..++|.++|+ |.++.+ +.+++|++.|+++ |.|.+|.+..|..
T Consensus 19 ps~vl~L~Nm~~~~el~d-dleedl~eef~k~--G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDD-DLEGEVTEECGKF--GAVNRVIIYQEKQ 62 (118)
T ss_dssp SCCEEEEESCSCGGGCCT-THHHHHHHHHTTT--SCEEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHH-HHHHHHHHHHhcc--CCEeEEEEeecCC
Confidence 3579999999 444443 5688999999987 7899999998753
No 252
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.61 E-value=5.6 Score=33.01 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.4
Q ss_pred ccccceEEEEecCHHHHHHHHH
Q 007784 174 EKQLGAALVFFTSRVAAASAAQ 195 (590)
Q Consensus 174 ~~~~~~AFVtF~s~~~a~~a~q 195 (590)
.+..|.|||+|++.++|..|.+
T Consensus 53 g~~~G~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 53 GRNNGNGLVKFLSPQDTFEALK 74 (109)
T ss_dssp CCCCSEEEEECSSHHHHHHHHH
T ss_pred CCCCeEEEEEECCHHHHHHHHh
Confidence 3568999999999999999985
No 253
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=59.34 E-value=6 Score=30.62 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.4
Q ss_pred ccceEEEEecCHHHHHHHHHhccc
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHA 199 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~ 199 (590)
..|.|||+|++.++|..|. .++.
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCcEEEEEcCCHHHHHHHH-hcCC
Confidence 3799999999999999998 5543
No 254
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.08 E-value=5.2 Score=33.16 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.7
Q ss_pred cccceEEEEecCHHHHHHHHHh
Q 007784 175 KQLGAALVFFTSRVAAASAAQS 196 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~ 196 (590)
+..|.|||+|.+.++|..|.+.
T Consensus 55 ~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 55 QGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp SCSSCEEEECSSHHHHHHHGGG
T ss_pred CcceEEEEEECCHHHHHHHHHh
Confidence 4678999999999999999876
No 255
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=58.97 E-value=11 Score=32.46 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=27.9
Q ss_pred cEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 54 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 54 yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
-.|.|.|+|.+.+ +++|++.|+++ |.|.+|.+..
T Consensus 29 L~I~V~NL~~~vt----e~~L~~lFs~y--G~V~~V~i~~ 62 (130)
T 3zzy_A 29 LRIIVENLFYPVT----LDVLHQIFSKF--GTVLKIITFT 62 (130)
T ss_dssp EEEEEESCCSCCC----HHHHHHHHTTS--SCEEEEEEEE
T ss_pred EEEEECCCCCCCC----HHHHHHHHhCc--CCEEEEEEEc
Confidence 3567999998776 78999999998 7899987653
No 256
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=58.58 E-value=12 Score=33.53 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=28.0
Q ss_pred ccceEEEEecCHHHHHHHHHhcccCCC----CceeeeeCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAP 211 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~AP 211 (590)
..+.|||+|++.++|..|.+.+....- ..++|+.|-
T Consensus 83 ~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 83 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 356899999999999999998876532 456777664
No 257
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.56 E-value=14 Score=31.44 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=28.0
Q ss_pred eEEEEecCHHHHHHHHHhcccCCC----CceeeeeCCCCC
Q 007784 179 AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPESR 214 (590)
Q Consensus 179 ~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~AP~P~ 214 (590)
.|||+|.+..+|..|.+.++...- ..++|+.|-.++
T Consensus 64 ~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 64 QAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 599999999999999998876532 357787775554
No 258
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=57.72 E-value=7.1 Score=35.29 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=27.1
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 211 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 211 (590)
..|.|||+|.+..+|..|.+.++.. ....+.+..|-
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 4789999999999999999876553 23456666653
No 259
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.48 E-value=5 Score=33.10 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=19.6
Q ss_pred cccceEEEEecCHHHHHHHHHhcc
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLH 198 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~ 198 (590)
...|.|||+|.+..+|..|. .++
T Consensus 65 ~~~g~afV~f~~~~~a~~A~-~l~ 87 (114)
T 2cq4_A 65 RSKGIAYVEFCEIQSVPLAI-GLT 87 (114)
T ss_dssp SCCCCEEEEESCGGGHHHHH-HHT
T ss_pred ccCcEEEEEeCcHHHHHHHH-HcC
Confidence 45789999999999999999 544
No 260
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=57.33 E-value=8.5 Score=34.20 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=25.6
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 210 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 210 (590)
..|.|||+|.+..+|..|.+.++.. ....+.|..|
T Consensus 113 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 113 SKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4689999999999999999876543 2334455444
No 261
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.79 E-value=12 Score=31.74 Aligned_cols=32 Identities=3% Similarity=0.034 Sum_probs=26.7
Q ss_pred EEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 56 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 56 VlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
|.|.|+|.+.+ +++|++.|+++ |.|.+|.+..
T Consensus 28 l~V~NL~~~vt----~~~L~~~Fs~y--G~V~~v~i~~ 59 (124)
T 2e5i_A 28 LSIQNPLYPIT----VDVLYTVCNPV--GKVQRIVIFK 59 (124)
T ss_dssp EEEESCCSCCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred EEEcCcCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 45899998876 78999999998 7899988754
No 262
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=56.46 E-value=6 Score=34.16 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=24.0
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhC
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 82 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~ 82 (590)
....||.|.|||.+++ +++|+++|+++.
T Consensus 43 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~G 70 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQ----EKDLKYIFGRYV 70 (143)
T ss_dssp SCCSEEEEEEECTTCC----HHHHHHHHGGGC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHhC
Confidence 4567999999999876 799999999983
No 263
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=55.86 E-value=5.4 Score=33.41 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=19.2
Q ss_pred cccceEEEEecCHHHHHHHHH
Q 007784 175 KQLGAALVFFTSRVAAASAAQ 195 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q 195 (590)
+..|.|||+|++.++|..|.+
T Consensus 59 ~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 59 RQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp CEEEEEEEEBSSHHHHHHHGG
T ss_pred CCCeEEEEEECCHHHHHHHHh
Confidence 457899999999999999998
No 264
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=55.26 E-value=8.3 Score=32.78 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.3
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ 200 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~ 200 (590)
+..|.|||+|.+. +|..|.+.++..
T Consensus 65 ~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 65 LNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp SBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CcceEEEEEECCH-HHHHHHHHhcCC
Confidence 4578999999999 999998887654
No 265
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=54.91 E-value=5.6 Score=34.03 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.3
Q ss_pred ccccceEEEEecCHHHHHHHHHh
Q 007784 174 EKQLGAALVFFTSRVAAASAAQS 196 (590)
Q Consensus 174 ~~~~~~AFVtF~s~~~a~~a~q~ 196 (590)
.+..|.|||+|++.++|..|.+.
T Consensus 81 GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 81 GKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCceEEEEEECCHHHHHHHHHH
Confidence 34689999999999999999985
No 266
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.54 E-value=47 Score=27.28 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=18.9
Q ss_pred ccCCCCcccc------HHHHHHHHHHHHHHHHHHHHh
Q 007784 139 FLGLLGKRVD------AIEYYNEKIKEIIPKLEAEQK 169 (590)
Q Consensus 139 ~~~~~g~kvd------~i~~~~~~l~~l~~~I~~~~~ 169 (590)
-|..||..++ .++.+++++++++.++.+.+.
T Consensus 49 ~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~ 85 (112)
T 1l8d_A 49 KCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLID 85 (112)
T ss_dssp ECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667776554 355666666666666665443
No 267
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.21 E-value=5.3 Score=34.00 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred cccceEEEEecCHHHHHHHHHh
Q 007784 175 KQLGAALVFFTSRVAAASAAQS 196 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~ 196 (590)
++.|.|||+|.+.++|..|.+.
T Consensus 66 r~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 66 RPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CEEEEEEECCSSHHHHHHHHTT
T ss_pred CEeeEEEEEECCHHHHHHHHHh
Confidence 4679999999999999999985
No 268
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=53.82 E-value=7.2 Score=33.96 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=25.8
Q ss_pred ccccceEEEEecCHHHHHHHHHhcccC--CCCceeeeeCCCC
Q 007784 174 EKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 213 (590)
Q Consensus 174 ~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 213 (590)
.+..|.|||+|++.++|..|.+ .... ....+.|..|..+
T Consensus 83 g~srGfaFV~F~~~e~A~~Al~-~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 83 GRVTGEADVEFATHEEAVAAMS-KDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp SCSSCCCEEECSHHHHHHHHTT-CCSCSSSSCCCCCEECCCS
T ss_pred CCCceEEEEEeCCHHHHHHHHh-hCCCEECCEEEEEEECCCC
Confidence 3567899999999999999984 3222 1223455555443
No 269
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=58.52 E-value=2.8 Score=34.90 Aligned_cols=36 Identities=28% Similarity=0.172 Sum_probs=25.8
Q ss_pred cccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeC
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 210 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~A 210 (590)
...|.|||+|.+.++|..|.+.+.... ...+.|+.|
T Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 55 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 457899999999999999988665432 234455544
No 270
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.24 E-value=21 Score=28.18 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=26.9
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
....||.|.|+ +.+ +++|+++|+++ |.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t----~~~l~~~F~~~--G~i~~v~i~ 46 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMT----PTLLRGAFSPF--GNIIDLSMD 46 (97)
T ss_dssp CCCSEEEEECS--SCC----HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCEEEEcCC--CCC----HHHHHHHHhhC--CCEEEEEec
Confidence 35679999995 443 79999999997 678888774
No 271
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=51.32 E-value=13 Score=31.93 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=26.9
Q ss_pred eEEEEecCHHHHHHHHHhcccCC----CCceeeeeCCCC
Q 007784 179 AALVFFTSRVAAASAAQSLHAQL----VDTWTVSDAPES 213 (590)
Q Consensus 179 ~AFVtF~s~~~a~~a~q~~~~~~----~~~~~v~~AP~P 213 (590)
.|||+|.+..+|..|.+.+.... ...++++.|-.+
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 49999999999999999887643 245677776543
No 272
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.98 E-value=51 Score=26.81 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCCCCCCCcccccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhh
Q 007784 96 KEANKIYEELEGYKKKLARAEAVYAESK--SAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKIT 171 (590)
Q Consensus 96 ~~l~~L~~~r~~~~~~Le~~~~~~~~~k--~~~~~~~~rP~~~~~~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~ 171 (590)
.+++.|..+++++.++++.++.+....- ....|.+.+- .++- -.+-..+.+-.++++++|+.+++++|.+.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKV---lH~~--~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKV---LHMS--LNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEE---EEES--SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCee---eeec--CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888889999888888887765321 1112221111 1110 12233444456788899999998888765
No 273
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.65 E-value=16 Score=30.98 Aligned_cols=41 Identities=10% Similarity=-0.038 Sum_probs=33.0
Q ss_pred CCcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 50 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
.+.---|.|.|+|.+..+ +++|++.|+++ |.|..|.+..|-
T Consensus 15 ~~~G~il~v~~l~~~~~s---redLke~F~~~--G~V~~Vd~~~g~ 55 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTC---REDLHILFSNH--GEIKWIDFVRGA 55 (121)
T ss_dssp CCCCCEEEEEESCCSSCC---HHHHHHHTCSS--CCEEEEECCTTC
T ss_pred ccCCeEEEEecCCCCcCC---HHHHHHHHHhc--CCEEEEEEecCC
Confidence 455668999999998445 89999999986 679888887764
No 274
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.19 E-value=15 Score=29.54 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=22.8
Q ss_pred ceEEEEecCHHHHHHHHHhcccC--CCCceeeeeC
Q 007784 178 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 210 (590)
Q Consensus 178 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 210 (590)
+.+||||++.++|..|.+ +... ....++|+.|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 448999999999999988 4433 2345666654
No 275
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=47.66 E-value=19 Score=34.50 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.4
Q ss_pred ccceEEEEecCHHHHHHHHHhcccC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQ 200 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~ 200 (590)
..|.|||+|.+..+|..|.+.++..
T Consensus 178 ~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 178 SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 4699999999999999998876543
No 276
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=45.84 E-value=17 Score=29.71 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=30.9
Q ss_pred ccEEEEcCC--CCCCCCC----ChHHHHHHHHhhhCCCceeEEEEeccch
Q 007784 53 QFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNNK 96 (590)
Q Consensus 53 ~yTVlV~~I--P~~~~~~----~~~~~L~~~F~~~~p~~v~~v~~~~d~~ 96 (590)
.+.|.++|+ |.++.+. ...++|++.|+++ |.|.+|.+.+|..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVD 52 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBT
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCC
Confidence 468999998 6665541 1346788889887 7899999888753
No 277
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.17 E-value=51 Score=21.76 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=15.4
Q ss_pred cccHHHHHHHHHHHHHHHHH
Q 007784 146 RVDAIEYYNEKIKEIIPKLE 165 (590)
Q Consensus 146 kvd~i~~~~~~l~~l~~~I~ 165 (590)
|-|-|.|+++++..+.++|+
T Consensus 29 kkdliaylekeianlrkkie 48 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34678888888888887775
No 278
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=41.45 E-value=5.7 Score=31.94 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.7
Q ss_pred cccceEEEEecCHHHHHHHHH
Q 007784 175 KQLGAALVFFTSRVAAASAAQ 195 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q 195 (590)
...|.|||+|++.++|..|.+
T Consensus 48 ~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 48 VSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp CEEEEEEEEESSCCCHHHHTT
T ss_pred CccceEEEEECCHHHHHHHHh
Confidence 356899999999999999988
No 279
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=40.56 E-value=15 Score=33.69 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.9
Q ss_pred cccceEEEEecCHHHHHHHHHhc
Q 007784 175 KQLGAALVFFTSRVAAASAAQSL 197 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~ 197 (590)
...|.|||+|++..+|..|.+..
T Consensus 148 ~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 148 AFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp CEEEEEEEEESSHHHHHHHHHCT
T ss_pred CcccEEEEEECCHHHHHHHHHhC
Confidence 35799999999999999998754
No 280
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=39.44 E-value=23 Score=32.88 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=28.7
Q ss_pred ccceEEEEecCHHHHHHHHHhcccCC--CCceeeeeCCC
Q 007784 176 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 212 (590)
Q Consensus 176 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~ 212 (590)
..|.+||.|++..+|..|.+.+..+. ...+.+..+|+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45899999999999999999987653 34556666653
No 281
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=35.54 E-value=51 Score=28.46 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=39.3
Q ss_pred cccceEEEEecCHHHHHHHHHhcccC------------CCC---------ceeeeeCCCCCCeeeCCcCcchHHHHHHHH
Q 007784 175 KQLGAALVFFTSRVAAASAAQSLHAQ------------LVD---------TWTVSDAPESRELIWNNLNIKFFQRQIRQY 233 (590)
Q Consensus 175 ~~~~~AFVtF~s~~~a~~a~q~~~~~------------~~~---------~~~v~~AP~P~DI~W~NL~~~~~~r~~R~~ 233 (590)
+..|.|||+|.+..+|..|.+..... .+. .......+....|.-.||.....+.-++.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 45799999999999999998654321 000 011122334566778899887667667765
Q ss_pred HH
Q 007784 234 VV 235 (590)
Q Consensus 234 ~~ 235 (590)
+.
T Consensus 91 F~ 92 (158)
T 2kn4_A 91 FE 92 (158)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 282
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.30 E-value=53 Score=26.94 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=29.9
Q ss_pred ceEEEEecCHHHHHHHHHh-cccCCCCceeeeeCC--CCCCeeeCCcC
Q 007784 178 GAALVFFTSRVAAASAAQS-LHAQLVDTWTVSDAP--ESRELIWNNLN 222 (590)
Q Consensus 178 ~~AFVtF~s~~~a~~a~q~-~~~~~~~~~~v~~AP--~P~DI~W~NL~ 222 (590)
+.|.|||.+...|+.+.+. -|.-+...+.|.+.| +|+-+.-.+|.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecCC
Confidence 8999999999999888775 444344556665544 44444444443
No 283
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.69 E-value=42 Score=27.30 Aligned_cols=39 Identities=5% Similarity=0.113 Sum_probs=26.5
Q ss_pred CcccEEEEcCCCC--CCCC-C----ChHHHHHHHHhhhCCCceeEEEE
Q 007784 51 PQQFAVLVRDLPD--LPKG-Q----SRKEQVDSYFKAIYPDTFYRSMV 91 (590)
Q Consensus 51 ~s~yTVlV~~IP~--~~~~-~----~~~~~L~~~F~~~~p~~v~~v~~ 91 (590)
....||+|+|+.. ++.+ + ..+++|+++|+++ |.|.+|.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 3468999999943 2211 0 1257899999987 67888855
No 284
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=30.65 E-value=31 Score=34.90 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=20.1
Q ss_pred ceEEEEecCHHHHHHHHHhccc
Q 007784 178 GAALVFFTSRVAAASAAQSLHA 199 (590)
Q Consensus 178 ~~AFVtF~s~~~a~~a~q~~~~ 199 (590)
|.|||+|++.++|+.|.+.++.
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEEECCHHHHHHHHHHhCC
Confidence 7999999999999999988764
No 285
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=29.74 E-value=44 Score=27.79 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=26.1
Q ss_pred CcccEEEEcCCCCCCCCCChHHHHHHHHhhhCCCceeEEEEe
Q 007784 51 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 92 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~p~~v~~v~~~ 92 (590)
....||.|.|+ +.+ +++|+++|+++ |.|.+|.+.
T Consensus 37 ~~~~~lfVgnl--~~t----e~~L~~~F~~~--G~I~~v~i~ 70 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMT----PTLLRGAFSPF--GNIIDLSMD 70 (121)
T ss_dssp CCCCEEEEECS--SCC----HHHHHHHHSTT--CCCSCEEEE
T ss_pred CCCCEEEEcCC--CCC----HHHHHHHHHcc--CCEEEEEEe
Confidence 35689999995 343 79999999997 667777665
No 286
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=29.72 E-value=26 Score=22.92 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 007784 440 SCIAPLIIPFGVVYFALG 457 (590)
Q Consensus 440 s~i~Plil~~~~~yf~~~ 457 (590)
+.+.|+++.++.+||++.
T Consensus 4 ~~~l~~v~~~~ifYFl~i 21 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMIL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788888888888753
No 287
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.37 E-value=36 Score=27.46 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.5
Q ss_pred cceEEEEecCHHHHHHHHHhccc
Q 007784 177 LGAALVFFTSRVAAASAAQSLHA 199 (590)
Q Consensus 177 ~~~AFVtF~s~~~a~~a~q~~~~ 199 (590)
...+||||++.++|..|.+ +..
T Consensus 58 ~d~~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH-GGG
T ss_pred cCcEEEEEcChHHHHHHHh-cCC
Confidence 5569999999999999998 443
No 288
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.25 E-value=1.4e+02 Score=24.92 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=37.8
Q ss_pred hcCCCCCCcccEEEEcCCCCCCCCCChHHHHHHHHhhhC---CCceeEEEEeccch
Q 007784 44 LMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY---PDTFYRSMVVTNNK 96 (590)
Q Consensus 44 l~~~~~~~s~yTVlV~~IP~~~~~~~~~~~L~~~F~~~~---p~~v~~v~~~~d~~ 96 (590)
+.|.....+++||-+-|||..+. +..++++.+... +|.+.++.++-|+.
T Consensus 12 l~s~~~~~~~rtiaL~~ipDtvn----darIr~lve~~~~i~~g~i~KI~L~pDH~ 63 (117)
T 2l9w_A 12 LASRNSKELETLICLFPLSDKVS----PSLICQFLQEEIHINEKDIRKILLVSDFN 63 (117)
T ss_dssp HHCCCTTTTTSCEEEECCCTTCC----HHHHHHHHHHHTCCCTTTCSEEEEETTTT
T ss_pred HhccCCccCCcEEEEecCCCCCC----HHHHHHHHhhhhccCccceeEEEEecCCC
Confidence 44554455689999999998775 689999998862 45688888888874
No 289
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.12 E-value=1.3e+02 Score=24.05 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=28.5
Q ss_pred CcccEEEEcCCCCCC---CCCChHHHHHHHHhhhCCCceeEEEEec
Q 007784 51 PQQFAVLVRDLPDLP---KGQSRKEQVDSYFKAIYPDTFYRSMVVT 93 (590)
Q Consensus 51 ~s~yTVlV~~IP~~~---~~~~~~~~L~~~F~~~~p~~v~~v~~~~ 93 (590)
...+.+.|+-.++.- .....+++|+++|+++ |.|.+|.+..
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~--G~V~~v~i~~ 51 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY--GEVLNLVLSS 51 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT--SCEEEEEEES
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhc--CCEEEEEEcc
Confidence 446788888766421 0112389999999998 6798888863
No 290
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=27.93 E-value=61 Score=26.79 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=28.4
Q ss_pred ccEEEEcCC--CCCCCCC----ChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 53 QFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 53 ~yTVlV~~I--P~~~~~~----~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
.++|.++|+ |.+..+. +.+++|++.|+++ |.|.+|.+..|.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~ 53 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNS 53 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTC
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCC
Confidence 468999998 4444332 2456677888776 789999887764
No 291
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.83 E-value=95 Score=25.27 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHh
Q 007784 148 DAIEYYNEKIKEIIPKLEAEQK 169 (590)
Q Consensus 148 d~i~~~~~~l~~l~~~I~~~~~ 169 (590)
+.+.-+++||.+++.++.+...
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777766543
No 292
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.29 E-value=69 Score=26.25 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred EEEEcCCCCCC-CCCChHHHHHHHHhhhCCC-------ceeEEEEeccchh
Q 007784 55 AVLVRDLPDLP-KGQSRKEQVDSYFKAIYPD-------TFYRSMVVTNNKE 97 (590)
Q Consensus 55 TVlV~~IP~~~-~~~~~~~~L~~~F~~~~p~-------~v~~v~~~~d~~~ 97 (590)
|++++|+|.++ .+++.++++++.|+++.|. +..+|.+.++..+
T Consensus 7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~ 57 (104)
T 1wey_A 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPL 57 (104)
T ss_dssp EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTT
T ss_pred eEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChH
No 293
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.25 E-value=79 Score=25.23 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=30.0
Q ss_pred CCcccEEEEcCCCCCCCCC----ChHHHHHHHHhhhCCCceeEEEEeccc
Q 007784 50 RPQQFAVLVRDLPDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNN 95 (590)
Q Consensus 50 ~~s~yTVlV~~IP~~~~~~----~~~~~L~~~F~~~~p~~v~~v~~~~d~ 95 (590)
-|.|=||+|.-.|.....+ ..-.+|.+.|+++ |.|..+.++.|-
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 4667899999887322111 2236788888886 678888877765
No 294
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.79 E-value=1e+02 Score=17.83 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 007784 153 YNEKIKEIIPKLEAEQKIT 171 (590)
Q Consensus 153 ~~~~l~~l~~~I~~~~~~~ 171 (590)
+-++++.+++.+++.|++.
T Consensus 6 lykeledlqerlrklrkkl 24 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4467788888888877654
No 295
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=22.66 E-value=88 Score=20.37 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007784 15 LVATYWVSFVTYFLLWRGYKHVSE 38 (590)
Q Consensus 15 ~~~~~~~~~~~~~~l~~e~~~~~~ 38 (590)
++.+.+..+.+.-..+.||++..+
T Consensus 11 livalIiaIVVWtiv~ieYrk~~k 34 (36)
T 1pi7_A 11 LVVAIIIAIVVWSIVIIEGRGGKK 34 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666777778889887654
No 296
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=21.58 E-value=1.4e+02 Score=24.76 Aligned_cols=22 Identities=5% Similarity=0.083 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHh
Q 007784 148 DAIEYYNEKIKEIIPKLEAEQK 169 (590)
Q Consensus 148 d~i~~~~~~l~~l~~~I~~~~~ 169 (590)
+.|..+++|++.++.+|+..+.
T Consensus 36 ~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 36 DKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888999999887654
No 297
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.38 E-value=1.6e+02 Score=22.63 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 007784 147 VDAIEYYNEKIKEIIPKLEAEQK 169 (590)
Q Consensus 147 vd~i~~~~~~l~~l~~~I~~~~~ 169 (590)
-+.+..++.||.+++.++.+...
T Consensus 51 ~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 51 RAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677888888877776543
Done!