Query 007785
Match_columns 590
No_of_seqs 416 out of 1551
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.7 5.8E-19 2E-23 138.2 1.4 56 271-330 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.6 3E-16 1E-20 134.3 6.3 88 114-204 3-93 (94)
3 2ct7_A Ring finger protein 31; 99.3 4.2E-13 1.4E-17 112.9 -0.3 77 186-266 4-84 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.0 1.2E-11 4E-16 102.6 -2.8 65 186-254 5-75 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.0 2.7E-11 9.1E-16 109.0 -2.2 116 114-289 5-126 (133)
6 3hcs_A TNF receptor-associated 98.5 6.1E-08 2.1E-12 91.3 5.8 84 113-224 15-98 (170)
7 2ecv_A Tripartite motif-contai 98.4 3.1E-07 1E-11 75.7 5.6 55 114-174 17-71 (85)
8 2ysj_A Tripartite motif-contai 98.3 4.5E-07 1.5E-11 70.8 5.3 45 114-165 18-62 (63)
9 2egp_A Tripartite motif-contai 98.3 5.3E-08 1.8E-12 79.5 -0.3 56 114-174 10-65 (79)
10 2ysl_A Tripartite motif-contai 98.3 1.5E-07 5.1E-12 75.6 2.3 53 113-174 17-69 (73)
11 2ecw_A Tripartite motif-contai 98.3 4.4E-07 1.5E-11 74.7 5.1 56 114-175 17-72 (85)
12 2ct2_A Tripartite motif protei 98.3 2E-07 6.9E-12 77.5 2.8 60 114-180 13-74 (88)
13 3ztg_A E3 ubiquitin-protein li 98.3 2.6E-07 8.8E-12 77.9 3.1 49 114-172 11-60 (92)
14 2ecy_A TNF receptor-associated 98.3 3.3E-07 1.1E-11 72.4 3.3 50 114-174 13-62 (66)
15 2d8t_A Dactylidin, ring finger 98.3 4E-07 1.4E-11 73.0 3.4 54 113-178 12-65 (71)
16 3hct_A TNF receptor-associated 98.3 8.6E-07 2.9E-11 78.4 5.6 84 113-224 15-98 (118)
17 1rmd_A RAG1; V(D)J recombinati 98.3 3.3E-07 1.1E-11 80.7 2.8 84 114-224 21-104 (116)
18 1t1h_A Gspef-atpub14, armadill 98.2 2.4E-07 8.3E-12 75.5 1.7 50 114-174 6-55 (78)
19 2yu4_A E3 SUMO-protein ligase 98.2 5.7E-07 1.9E-11 76.5 4.0 56 115-174 6-63 (94)
20 1e4u_A Transcriptional repress 98.2 5.4E-07 1.9E-11 74.0 3.7 53 114-175 9-63 (78)
21 3lrq_A E3 ubiquitin-protein li 98.2 4.3E-07 1.5E-11 78.0 2.3 51 115-176 21-72 (100)
22 2yur_A Retinoblastoma-binding 98.2 1.3E-06 4.5E-11 70.6 5.0 49 113-171 12-61 (74)
23 2csy_A Zinc finger protein 183 98.2 1.4E-06 4.7E-11 71.6 4.9 48 114-173 13-60 (81)
24 3l11_A E3 ubiquitin-protein li 98.2 5.6E-07 1.9E-11 79.1 2.6 51 113-174 12-62 (115)
25 2ecm_A Ring finger and CHY zin 98.2 9.9E-07 3.4E-11 66.7 3.5 48 115-172 4-53 (55)
26 1jm7_A BRCA1, breast cancer ty 98.2 7.3E-07 2.5E-11 77.7 3.2 53 115-176 20-72 (112)
27 3knv_A TNF receptor-associated 98.2 1.1E-06 3.7E-11 80.4 4.2 48 114-172 29-76 (141)
28 2djb_A Polycomb group ring fin 98.1 1.8E-06 6.2E-11 69.3 4.9 49 114-174 13-62 (72)
29 3fl2_A E3 ubiquitin-protein li 98.1 9.8E-07 3.4E-11 78.6 3.5 49 115-174 51-99 (124)
30 3ng2_A RNF4, snurf, ring finge 98.1 3.3E-07 1.1E-11 73.1 -0.1 52 114-175 8-64 (71)
31 2y43_A E3 ubiquitin-protein li 98.1 8.5E-07 2.9E-11 75.8 2.4 48 115-174 21-69 (99)
32 4ayc_A E3 ubiquitin-protein li 98.1 8.9E-07 3E-11 80.5 2.6 46 116-173 53-98 (138)
33 2ecj_A Tripartite motif-contai 98.1 1.9E-06 6.3E-11 65.8 3.9 45 114-165 13-57 (58)
34 2ea6_A Ring finger protein 4; 98.1 1.7E-06 5.7E-11 68.4 3.5 50 114-173 13-67 (69)
35 2xeu_A Ring finger protein 4; 98.1 4.2E-07 1.4E-11 70.8 -0.2 51 115-175 2-57 (64)
36 2kr4_A Ubiquitin conjugation f 98.1 2.4E-06 8.4E-11 71.2 4.3 50 114-175 12-61 (85)
37 1g25_A CDK-activating kinase a 98.1 1.8E-06 6.2E-11 67.8 3.2 51 116-175 3-56 (65)
38 2kiz_A E3 ubiquitin-protein li 98.0 5E-06 1.7E-10 65.9 5.1 50 114-173 12-62 (69)
39 1z6u_A NP95-like ring finger p 98.0 2.6E-06 9.1E-11 78.7 3.3 50 115-175 77-126 (150)
40 2ckl_A Polycomb group ring fin 98.0 2.8E-06 9.7E-11 73.7 3.2 47 115-173 14-61 (108)
41 3htk_C E3 SUMO-protein ligase 97.9 5.1E-06 1.7E-10 82.9 4.1 55 113-175 178-233 (267)
42 1jm7_B BARD1, BRCA1-associated 97.9 1.4E-06 4.8E-11 76.9 -0.3 45 115-173 21-66 (117)
43 1bor_A Transcription factor PM 97.9 2.2E-06 7.6E-11 65.5 0.7 44 115-173 5-48 (56)
44 2kre_A Ubiquitin conjugation f 97.9 6E-06 2.1E-10 71.0 2.9 49 114-174 27-75 (100)
45 1iym_A EL5; ring-H2 finger, ub 97.9 5.8E-06 2E-10 62.4 2.5 48 115-172 4-53 (55)
46 2ect_A Ring finger protein 126 97.8 9.2E-06 3.2E-10 66.0 3.9 51 114-174 13-64 (78)
47 1wgm_A Ubiquitin conjugation f 97.8 8.6E-06 2.9E-10 69.8 3.5 49 114-174 20-69 (98)
48 1chc_A Equine herpes virus-1 r 97.8 8.7E-06 3E-10 64.3 3.1 48 115-173 4-51 (68)
49 1v87_A Deltex protein 2; ring- 97.8 1.1E-05 3.7E-10 70.6 3.9 53 116-173 25-93 (114)
50 1x4j_A Ring finger protein 38; 97.8 1.1E-05 3.6E-10 65.2 3.5 50 114-173 21-71 (75)
51 2ep4_A Ring finger protein 24; 97.8 1.5E-05 5.1E-10 64.0 4.3 50 114-173 13-63 (74)
52 2c2l_A CHIP, carboxy terminus 97.8 1.2E-05 4.2E-10 80.8 4.6 51 114-175 206-256 (281)
53 2l0b_A E3 ubiquitin-protein li 97.8 1.2E-05 4.3E-10 67.6 3.9 50 114-173 38-88 (91)
54 2ckl_B Ubiquitin ligase protei 97.8 9.6E-06 3.3E-10 75.8 3.1 49 114-173 52-101 (165)
55 2ecn_A Ring finger protein 141 97.7 6.6E-06 2.3E-10 65.4 0.9 47 114-173 13-59 (70)
56 4ic3_A E3 ubiquitin-protein li 97.6 1.8E-05 6E-10 64.0 1.5 43 115-173 23-66 (74)
57 2f42_A STIP1 homology and U-bo 97.6 3.7E-05 1.3E-09 72.9 3.7 51 114-175 104-154 (179)
58 2ecg_A Baculoviral IAP repeat- 97.4 3.7E-05 1.3E-09 62.2 1.8 43 115-173 24-67 (75)
59 2ecl_A Ring-box protein 2; RNF 97.3 0.00011 3.7E-09 60.4 2.8 49 115-173 14-75 (81)
60 2ct7_A Ring finger protein 31; 97.3 0.00012 4E-09 61.1 3.0 49 276-329 25-74 (86)
61 2vje_A E3 ubiquitin-protein li 97.2 0.00012 4.2E-09 57.4 2.3 49 113-173 5-56 (64)
62 2y1n_A E3 ubiquitin-protein li 97.2 0.00017 5.7E-09 76.2 3.8 47 117-174 333-379 (389)
63 2yho_A E3 ubiquitin-protein li 97.2 8.7E-05 3E-09 60.8 1.0 43 116-174 18-61 (79)
64 2d8s_A Cellular modulator of i 97.1 0.00049 1.7E-08 56.5 5.1 52 114-173 13-69 (80)
65 4ap4_A E3 ubiquitin ligase RNF 97.1 0.00014 4.8E-09 64.6 1.8 53 114-176 70-127 (133)
66 2ea5_A Cell growth regulator w 97.1 0.0004 1.4E-08 55.1 3.9 44 114-173 13-57 (68)
67 2vje_B MDM4 protein; proto-onc 97.0 0.00027 9.3E-09 55.2 2.6 47 115-173 6-55 (63)
68 3dpl_R Ring-box protein 1; ubi 96.8 0.00055 1.9E-08 59.3 3.1 48 115-172 36-99 (106)
69 2jmo_A Parkin; IBR, E3 ligase, 96.7 0.00066 2.2E-08 55.8 2.5 38 276-313 25-70 (80)
70 3t6p_A Baculoviral IAP repeat- 96.5 0.00065 2.2E-08 71.0 1.1 43 115-173 294-337 (345)
71 4a0k_B E3 ubiquitin-protein li 96.0 0.0011 3.6E-08 58.6 0.0 47 116-172 48-110 (117)
72 3k1l_B Fancl; UBC, ring, RWD, 95.9 0.0041 1.4E-07 64.2 3.7 113 37-174 246-373 (381)
73 2bay_A PRE-mRNA splicing facto 95.2 0.0075 2.6E-07 46.7 2.0 47 116-174 3-50 (61)
74 2ct0_A Non-SMC element 1 homol 94.6 0.013 4.3E-07 47.3 1.9 50 115-173 14-63 (74)
75 1v92_A NSFL1 cofactor P47; 3-h 93.6 0.16 5.3E-06 36.6 6.0 40 51-90 5-44 (46)
76 3vk6_A E3 ubiquitin-protein li 92.6 0.063 2.1E-06 45.5 2.8 44 118-172 3-47 (101)
77 2dal_A Protein KIAA0794; FAS a 91.9 0.37 1.2E-05 37.2 6.3 41 50-90 14-54 (62)
78 2jun_A Midline-1; B-BOX, TRIM, 91.9 0.022 7.6E-07 48.2 -0.8 75 228-316 17-95 (101)
79 1wd2_A Ariadne-1 protein homol 91.0 0.094 3.2E-06 40.4 2.0 37 206-246 5-44 (60)
80 2jun_A Midline-1; B-BOX, TRIM, 90.8 0.092 3.1E-06 44.2 2.0 33 116-149 3-37 (101)
81 1vyx_A ORF K3, K3RING; zinc-bi 90.5 0.22 7.6E-06 38.2 3.7 48 115-172 5-57 (60)
82 2di0_A Activating signal coint 90.3 0.67 2.3E-05 36.7 6.4 41 50-90 12-53 (71)
83 1wj7_A Hypothetical protein (R 90.2 0.52 1.8E-05 40.2 6.0 40 51-90 39-78 (104)
84 2cs3_A Protein C14ORF4, MY039 89.8 0.34 1.2E-05 39.1 4.3 67 113-182 12-88 (93)
85 2dam_A ETEA protein; KIAA0887, 87.8 1.2 4E-05 35.0 6.1 41 50-90 17-58 (67)
86 1z96_A DNA-damage, UBA-domain 86.4 1.2 4E-05 30.7 4.9 35 52-87 5-39 (40)
87 1g25_A CDK-activating kinase a 85.6 0.28 9.5E-06 37.6 1.4 32 233-289 25-56 (65)
88 3vk6_A E3 ubiquitin-protein li 83.9 0.56 1.9E-05 39.7 2.6 48 209-290 3-51 (101)
89 2dzl_A Protein FAM100B; UBA-li 82.5 2.4 8.2E-05 33.1 5.6 37 53-89 19-55 (66)
90 3e21_A HFAF1, FAS-associated f 80.8 1.3 4.5E-05 31.9 3.2 37 52-88 6-43 (45)
91 1x4j_A Ring finger protein 38; 79.8 0.81 2.8E-05 35.9 2.1 33 233-291 43-75 (75)
92 1e4u_A Transcriptional repress 79.8 0.33 1.1E-05 39.2 -0.2 51 208-288 12-62 (78)
93 2ecy_A TNF receptor-associated 78.8 0.53 1.8E-05 36.0 0.7 49 207-289 15-63 (66)
94 2ckl_B Ubiquitin ligase protei 78.7 0.88 3E-05 41.7 2.3 45 209-287 56-101 (165)
95 3lrq_A E3 ubiquitin-protein li 76.9 0.71 2.4E-05 38.7 1.0 30 277-311 23-53 (100)
96 3nw0_A Non-structural maintena 76.1 1.3 4.4E-05 43.5 2.8 49 116-174 180-229 (238)
97 1ify_A HHR23A, UV excision rep 75.7 5.5 0.00019 29.0 5.4 37 52-89 9-45 (49)
98 2jrp_A Putative cytoplasmic pr 75.4 1.9 6.6E-05 35.0 3.1 33 277-311 3-41 (81)
99 2ecm_A Ring finger and CHY zin 73.7 1.5 5.2E-05 31.8 2.0 29 233-287 26-54 (55)
100 2yrg_A Tripartite motif-contai 73.5 1.8 6.1E-05 32.7 2.4 33 277-316 15-49 (59)
101 1bor_A Transcription factor PM 73.1 2.1 7.3E-05 31.7 2.7 27 233-288 23-49 (56)
102 2did_A Tripartite motif protei 72.8 1.9 6.6E-05 31.6 2.4 32 277-315 9-42 (53)
103 1fre_A Nuclear factor XNF7; zi 72.3 2 6.8E-05 29.8 2.2 32 277-315 4-37 (42)
104 2ysj_A Tripartite motif-contai 72.2 1.1 3.7E-05 33.9 0.8 31 277-312 21-51 (63)
105 3hct_A TNF receptor-associated 71.5 1.7 5.7E-05 37.5 2.0 28 208-244 19-46 (118)
106 2csv_A Tripartite motif protei 71.3 1.9 6.4E-05 33.9 2.1 32 277-315 19-51 (72)
107 1chc_A Equine herpes virus-1 r 70.6 1.7 5.8E-05 33.2 1.7 29 233-287 23-51 (68)
108 2g3q_A Protein YBL047C; endocy 70.4 7.4 0.00025 27.2 4.9 37 52-89 5-41 (43)
109 1pft_A TFIIB, PFTFIIBN; N-term 70.3 2.7 9.2E-05 30.6 2.6 29 275-303 4-34 (50)
110 2k4x_A 30S ribosomal protein S 69.8 2 6.7E-05 32.3 1.8 29 275-303 17-46 (55)
111 1z6u_A NP95-like ring finger p 69.8 2 6.8E-05 38.9 2.2 46 208-287 79-124 (150)
112 2ysl_A Tripartite motif-contai 69.6 1.4 4.8E-05 34.1 1.0 32 277-313 21-52 (73)
113 4ayc_A E3 ubiquitin-protein li 69.5 1.9 6.6E-05 38.2 2.0 31 277-312 54-84 (138)
114 1jm7_B BARD1, BRCA1-associated 69.1 2.2 7.5E-05 36.6 2.3 29 209-246 24-53 (117)
115 3hcs_A TNF receptor-associated 68.6 1.9 6.7E-05 39.5 1.9 31 207-246 18-48 (170)
116 2jr6_A UPF0434 protein NMA0874 68.2 3.1 0.00011 32.7 2.7 33 276-308 8-41 (68)
117 4ic3_A E3 ubiquitin-protein li 68.0 1.5 5E-05 34.6 0.8 26 233-288 41-67 (74)
118 1wfh_A Zinc finger (AN1-like) 67.9 2.6 8.8E-05 32.7 2.1 27 276-306 15-41 (64)
119 2yvr_A Transcription intermedi 67.5 2.4 8.1E-05 30.6 1.8 32 277-315 7-40 (50)
120 1vg5_A RSGI RUH-014, rhomboid 67.2 7.2 0.00025 31.0 4.7 36 53-89 31-66 (73)
121 3ztg_A E3 ubiquitin-protein li 66.0 1.2 4E-05 36.4 -0.2 30 277-311 14-44 (92)
122 3fl2_A E3 ubiquitin-protein li 65.8 2 6.7E-05 37.3 1.3 30 277-311 53-82 (124)
123 2ct2_A Tripartite motif protei 65.8 1.5 5.1E-05 35.2 0.5 34 277-311 16-49 (88)
124 1vq8_Z 50S ribosomal protein L 65.8 2.6 9E-05 34.4 1.9 36 275-313 26-62 (83)
125 2d8v_A Zinc finger FYVE domain 65.7 2.9 0.0001 32.4 2.0 33 114-149 6-39 (67)
126 3j20_Y 30S ribosomal protein S 65.5 2.5 8.6E-05 31.1 1.6 28 275-303 18-47 (50)
127 1oai_A Nuclear RNA export fact 65.4 26 0.00088 26.5 7.3 40 50-89 6-45 (59)
128 3ddt_A E3 ubiquitin-protein li 65.1 2.5 8.7E-05 30.3 1.6 32 277-315 7-41 (48)
129 2yur_A Retinoblastoma-binding 64.3 2.2 7.5E-05 33.4 1.2 30 277-311 16-46 (74)
130 1wg2_A Zinc finger (AN1-like) 63.9 3.6 0.00012 31.9 2.2 27 276-306 15-41 (64)
131 2egp_A Tripartite motif-contai 63.5 2.4 8.2E-05 33.3 1.3 32 277-313 13-44 (79)
132 3ng2_A RNF4, snurf, ring finge 63.3 1.8 6.2E-05 33.2 0.5 36 277-312 11-48 (71)
133 1t1h_A Gspef-atpub14, armadill 63.3 2.7 9.2E-05 33.0 1.5 31 277-312 9-39 (78)
134 2dja_A Midline-2; tripartite m 63.2 3.8 0.00013 32.9 2.4 33 277-316 19-54 (84)
135 1veg_A NEDD8 ultimate buster-1 63.0 14 0.00048 30.1 5.7 35 54-89 32-66 (83)
136 2ckl_A Polycomb group ring fin 63.0 2.3 7.8E-05 35.9 1.1 31 277-312 16-47 (108)
137 2d8t_A Dactylidin, ring finger 62.7 2.1 7.2E-05 33.1 0.8 31 277-312 16-46 (71)
138 3o27_A Putative uncharacterize 62.4 1.8 6E-05 33.7 0.2 25 565-589 12-36 (68)
139 1wfl_A Zinc finger protein 216 61.7 4 0.00014 32.5 2.2 26 277-306 26-51 (74)
140 1iym_A EL5; ring-H2 finger, ub 61.4 2.9 9.9E-05 30.3 1.3 35 277-313 6-41 (55)
141 2jne_A Hypothetical protein YF 61.4 5.1 0.00017 33.5 2.9 33 277-311 33-71 (101)
142 2djb_A Polycomb group ring fin 61.3 2.3 7.7E-05 33.0 0.7 30 277-311 16-46 (72)
143 1v87_A Deltex protein 2; ring- 61.3 2.8 9.6E-05 35.6 1.4 38 233-291 60-97 (114)
144 1wji_A Tudor domain containing 60.4 14 0.00047 28.4 5.0 37 53-90 11-47 (63)
145 2dak_A Ubiquitin carboxyl-term 60.0 16 0.00055 27.9 5.4 36 53-89 11-46 (63)
146 3l11_A E3 ubiquitin-protein li 59.5 4.9 0.00017 34.2 2.6 31 277-312 16-46 (115)
147 1wfp_A Zinc finger (AN1-like) 59.5 4.1 0.00014 32.4 1.9 28 275-306 24-51 (74)
148 2xeu_A Ring finger protein 4; 59.3 2.5 8.6E-05 31.5 0.6 35 277-311 4-40 (64)
149 2ecw_A Tripartite motif-contai 58.6 2.7 9.4E-05 33.2 0.8 30 277-311 20-49 (85)
150 2kiz_A E3 ubiquitin-protein li 58.6 3.1 0.00011 31.8 1.1 34 277-312 15-48 (69)
151 2y43_A E3 ubiquitin-protein li 58.5 2.8 9.4E-05 34.7 0.8 31 277-312 23-54 (99)
152 1wff_A Riken cDNA 2810002D23 p 58.0 4.7 0.00016 33.0 2.1 28 276-306 25-52 (85)
153 2d8u_A Ubiquitin ligase TRIM63 57.7 4.3 0.00015 30.7 1.8 33 277-316 9-44 (64)
154 2ecn_A Ring finger protein 141 57.7 3.1 0.00011 31.9 0.9 30 277-312 16-45 (70)
155 2csy_A Zinc finger protein 183 57.6 3.2 0.00011 33.0 1.0 30 277-311 16-45 (81)
156 2c2l_A CHIP, carboxy terminus 57.5 7.3 0.00025 38.1 3.9 15 230-244 222-236 (281)
157 3knv_A TNF receptor-associated 57.2 3.2 0.00011 37.1 1.1 30 277-311 32-61 (141)
158 2knz_A Ubiquilin-4; cytoplasm, 57.0 22 0.00074 26.2 5.5 37 52-89 12-49 (53)
159 2ea6_A Ring finger protein 4; 56.4 2.9 0.0001 31.7 0.6 35 277-311 16-52 (69)
160 2ect_A Ring finger protein 126 56.3 5.3 0.00018 31.2 2.1 34 277-312 16-49 (78)
161 2jp7_A MRNA export factor MEX6 55.3 30 0.001 26.0 6.1 41 49-89 4-44 (57)
162 1wiv_A UBP14, ubiquitin-specif 55.3 25 0.00085 27.8 5.9 34 55-89 33-66 (73)
163 2ecj_A Tripartite motif-contai 55.1 2 7E-05 31.4 -0.5 30 277-311 16-45 (58)
164 2egm_A Tripartite motif-contai 54.8 2.8 9.7E-05 31.4 0.2 32 277-315 19-52 (57)
165 1rmd_A RAG1; V(D)J recombinati 54.3 3.8 0.00013 34.9 1.0 30 277-311 24-53 (116)
166 2yho_A E3 ubiquitin-protein li 54.2 3.7 0.00013 32.8 0.9 26 233-288 35-61 (79)
167 2ep4_A Ring finger protein 24; 53.5 3.4 0.00012 32.0 0.5 34 277-312 16-49 (74)
168 2ecv_A Tripartite motif-contai 52.7 3.5 0.00012 32.6 0.5 30 277-311 20-49 (85)
169 1wgl_A TOLL-interacting protei 51.6 23 0.00079 26.8 4.9 38 52-89 10-48 (59)
170 2y1n_A E3 ubiquitin-protein li 51.2 9.4 0.00032 40.0 3.6 33 231-288 347-379 (389)
171 3bq3_A Defective in cullin ned 50.4 18 0.00061 36.0 5.3 44 47-90 11-54 (270)
172 1jm7_A BRCA1, breast cancer ty 49.6 3.6 0.00012 34.6 0.1 30 277-311 22-51 (112)
173 2a01_A Apolipoprotein A-I; fou 49.1 1.7E+02 0.0057 28.2 12.1 65 434-498 165-232 (243)
174 2jy5_A Ubiquilin-1; UBA, alter 48.8 28 0.00097 25.4 4.9 36 53-89 14-50 (52)
175 2hf1_A Tetraacyldisaccharide-1 48.7 11 0.00038 29.5 2.8 30 277-306 9-39 (68)
176 2js4_A UPF0434 protein BB2007; 48.4 12 0.0004 29.5 2.9 31 276-306 8-39 (70)
177 2dai_A Ubadc1, ubiquitin assoc 46.8 36 0.0012 27.6 5.7 37 53-90 31-67 (83)
178 3qt1_I DNA-directed RNA polyme 46.7 6.6 0.00023 34.9 1.3 30 205-237 22-55 (133)
179 2dah_A Ubiquilin-3; UBA domain 46.7 31 0.0011 25.5 4.9 36 53-89 11-47 (54)
180 2pk7_A Uncharacterized protein 46.2 13 0.00046 29.1 2.9 30 276-305 8-38 (69)
181 2l0b_A E3 ubiquitin-protein li 46.1 3.7 0.00013 33.5 -0.4 35 277-313 41-75 (91)
182 2dkl_A Trinucleotide repeat co 45.9 38 0.0013 27.5 5.7 38 52-90 22-59 (85)
183 1x4w_A Hypothetical protein FL 45.8 3.7 0.00013 32.1 -0.4 28 276-306 15-44 (67)
184 2ecl_A Ring-box protein 2; RNF 44.5 8.7 0.0003 30.6 1.7 24 290-313 39-62 (81)
185 2jrp_A Putative cytoplasmic pr 42.9 20 0.00068 29.0 3.5 26 278-311 33-61 (81)
186 3t6p_A Baculoviral IAP repeat- 42.5 11 0.00037 38.9 2.4 27 232-288 311-338 (345)
187 2cpw_A CBL-interacting protein 42.1 43 0.0015 25.6 5.2 35 54-89 22-57 (64)
188 2jny_A Uncharacterized BCR; st 40.8 18 0.0006 28.2 2.8 33 276-308 10-43 (67)
189 1weo_A Cellulose synthase, cat 40.2 15 0.00051 30.3 2.3 53 215-292 21-74 (93)
190 2dag_A Ubiquitin carboxyl-term 39.6 54 0.0018 25.8 5.6 37 53-90 11-48 (74)
191 1vej_A Riken cDNA 4931431F19; 39.6 59 0.002 25.8 5.7 37 52-89 30-67 (74)
192 3t7l_A Zinc finger FYVE domain 39.2 23 0.00079 29.0 3.5 38 112-149 16-55 (90)
193 3h0g_I DNA-directed RNA polyme 38.1 22 0.00075 30.5 3.3 28 276-303 4-36 (113)
194 1odh_A MGCM1; transcription fa 37.5 22 0.00075 32.4 3.2 33 248-301 97-131 (174)
195 2xzm_9 RPS31E; ribosome, trans 36.4 17 0.0006 34.1 2.6 29 276-305 113-143 (189)
196 1dv0_A DNA repair protein HHR2 35.6 12 0.00042 26.9 1.1 36 53-89 6-41 (47)
197 4a0k_B E3 ubiquitin-protein li 35.2 8 0.00027 33.6 0.0 37 278-314 61-99 (117)
198 2kpi_A Uncharacterized protein 34.4 28 0.00097 26.0 3.0 25 277-303 11-38 (56)
199 3nyb_B Protein AIR2; polya RNA 34.1 32 0.0011 27.9 3.5 49 236-310 5-55 (83)
200 1otr_A Protein CUE2; protein-p 33.2 90 0.0031 22.6 5.4 38 52-89 5-43 (49)
201 3qt1_I DNA-directed RNA polyme 32.6 18 0.00062 32.0 1.9 29 275-303 23-56 (133)
202 2cp9_A EF-TS, EF-TSMT, elongat 32.4 55 0.0019 25.2 4.4 39 53-91 11-49 (64)
203 2ko5_A Ring finger protein Z; 32.0 11 0.00039 31.3 0.4 46 115-174 27-73 (99)
204 3dpl_R Ring-box protein 1; ubi 31.9 16 0.00054 31.0 1.3 25 290-314 64-88 (106)
205 2f42_A STIP1 homology and U-bo 31.8 46 0.0016 30.9 4.6 30 206-244 105-134 (179)
206 1whc_A RSGI RUH-027, UBA/UBX 3 31.0 67 0.0023 24.4 4.7 35 55-90 13-48 (64)
207 1vek_A UBP14, ubiquitin-specif 30.9 81 0.0028 25.5 5.4 36 54-90 32-68 (84)
208 4esj_A Type-2 restriction enzy 30.9 34 0.0012 33.2 3.6 21 267-288 26-47 (257)
209 1twf_I B12.6, DNA-directed RNA 30.8 22 0.00074 31.0 2.1 28 276-303 4-36 (122)
210 2zet_C Melanophilin; complex, 30.6 33 0.0011 31.1 3.3 41 276-317 68-109 (153)
211 3m7n_A Putative uncharacterize 30.6 24 0.00081 32.7 2.4 24 277-302 141-165 (179)
212 1joc_A EEA1, early endosomal a 30.1 24 0.00084 30.7 2.3 35 114-148 67-103 (125)
213 1ee8_A MUTM (FPG) protein; bet 29.0 26 0.00089 34.7 2.6 25 277-301 236-263 (266)
214 1joc_A EEA1, early endosomal a 28.9 36 0.0012 29.6 3.2 33 276-310 69-102 (125)
215 3k9o_A Ubiquitin-conjugating e 28.9 60 0.0021 30.4 5.0 35 54-89 166-200 (201)
216 1weo_A Cellulose synthase, cat 28.8 60 0.0021 26.7 4.2 49 115-172 15-68 (93)
217 2jne_A Hypothetical protein YF 28.4 52 0.0018 27.5 3.8 26 277-309 62-89 (101)
218 3htk_C E3 SUMO-protein ligase 28.4 22 0.00075 35.3 1.8 30 277-311 182-212 (267)
219 3u5c_f 40S ribosomal protein S 28.3 29 0.001 31.3 2.6 30 276-305 118-150 (152)
220 1z2q_A LM5-1; membrane protein 28.2 28 0.00094 28.1 2.1 36 113-148 18-55 (84)
221 2xzf_A Formamidopyrimidine-DNA 27.8 23 0.0008 35.1 2.0 25 277-301 243-270 (271)
222 2dhy_A CUE domain-containing p 27.6 1.2E+02 0.004 23.5 5.5 39 51-89 18-57 (67)
223 3s84_A Apolipoprotein A-IV; fo 27.5 4.4E+02 0.015 25.8 13.5 135 333-495 65-207 (273)
224 1deq_A Fibrinogen (alpha chain 27.1 3.9E+02 0.013 27.6 10.8 16 485-500 186-201 (390)
225 3u6p_A Formamidopyrimidine-DNA 27.1 23 0.0008 35.1 1.8 24 277-300 246-272 (273)
226 2yw8_A RUN and FYVE domain-con 26.9 28 0.00095 27.9 1.9 34 115-148 18-53 (82)
227 1wr1_B Ubiquitin-like protein 26.9 1.4E+02 0.0049 22.2 5.8 37 52-89 18-55 (58)
228 2bwb_A Ubiquitin-like protein 26.8 1.4E+02 0.0049 21.0 5.5 36 52-88 8-44 (46)
229 1k82_A Formamidopyrimidine-DNA 26.6 25 0.00086 34.8 1.9 24 277-300 241-267 (268)
230 3ghg_A Fibrinogen alpha chain; 26.5 2E+02 0.0067 31.1 8.7 49 434-482 106-156 (562)
231 1y02_A CARP2, FYVE-ring finger 26.5 23 0.00079 30.8 1.5 38 112-149 15-54 (120)
232 2akl_A PHNA-like protein PA012 26.4 37 0.0013 29.9 2.7 28 275-303 26-54 (138)
233 3zyq_A Hepatocyte growth facto 26.3 38 0.0013 32.5 3.1 33 116-148 164-198 (226)
234 2lli_A Protein AIR2; RNA surve 26.3 63 0.0021 27.7 4.3 15 238-252 24-39 (124)
235 1dvp_A HRS, hepatocyte growth 26.0 37 0.0013 32.3 3.0 32 277-310 162-194 (220)
236 1k3x_A Endonuclease VIII; hydr 25.9 26 0.00087 34.6 1.8 24 277-300 235-261 (262)
237 1dl6_A Transcription factor II 25.5 47 0.0016 24.8 2.8 26 276-301 11-38 (58)
238 2lli_A Protein AIR2; RNA surve 25.4 55 0.0019 28.1 3.7 18 237-254 5-22 (124)
239 1twf_L ABC10-alpha, DNA-direct 25.2 20 0.00069 28.1 0.7 24 277-301 29-53 (70)
240 3e46_A Ubiquitin-conjugating e 24.4 1E+02 0.0035 30.1 5.9 36 53-89 217-252 (253)
241 1zbd_B Rabphilin-3A; G protein 24.1 27 0.00093 30.9 1.5 30 116-145 55-87 (134)
242 1zbd_B Rabphilin-3A; G protein 23.7 49 0.0017 29.2 3.1 36 275-311 54-90 (134)
243 3mjh_B Early endosome antigen 22.4 22 0.00075 23.9 0.4 14 114-127 3-16 (34)
244 3ghg_A Fibrinogen alpha chain; 22.3 3.3E+02 0.011 29.4 9.5 13 434-446 176-188 (562)
245 1wii_A Hypothetical UPF0222 pr 22.2 44 0.0015 27.2 2.3 27 277-303 24-57 (85)
246 2lbm_A Transcriptional regulat 21.8 1.6E+02 0.0056 26.1 6.2 48 115-170 62-116 (142)
247 1x4u_A Zinc finger, FYVE domai 21.6 38 0.0013 27.2 1.8 34 114-147 12-47 (84)
248 2ekk_A UBA domain from E3 ubiq 21.3 1.5E+02 0.0052 20.7 4.8 34 54-89 12-45 (47)
249 1vfy_A Phosphatidylinositol-3- 20.3 43 0.0015 26.1 1.8 32 117-148 12-45 (73)
250 2zet_C Melanophilin; complex, 20.3 51 0.0017 29.8 2.5 31 115-145 67-100 (153)
251 1wff_A Riken cDNA 2810002D23 p 20.1 88 0.003 25.4 3.6 28 115-142 24-51 (85)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.72 E-value=5.8e-19 Score=138.16 Aligned_cols=56 Identities=50% Similarity=1.156 Sum_probs=48.5
Q ss_pred HHHhCCcCCCCCCcceeecCCCCeeEec---cCceeeccccccccCCCcccccCCcccCCcch
Q 007785 271 WITVHTKPCPKCHKPVEKNGGCNLVSCI---CGQAFCWLCGGATGRDHTWSRIAGHSCGRYKE 330 (590)
Q Consensus 271 ~i~~~tK~CPkC~~~IEKn~GCNHMtC~---Cg~~FCwlC~~~~~~~H~w~~~~g~~C~~y~~ 330 (590)
||.+++|+||+|+++|||++|||||+|+ |+++|||+|+++|.. |+ ...|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~-~~---~~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP-HG---SAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG-GG---TSSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc-CC---CccccCCCccc
Confidence 7888999999999999999999999995 999999999999653 21 13589999975
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.62 E-value=3e-16 Score=134.33 Aligned_cols=88 Identities=20% Similarity=0.479 Sum_probs=79.0
Q ss_pred ccccccccccccccccCceec-CCCCccchhhHHHHHHhhhhcCCcccccccccccccc--cchHHHHHHhcCCCchHHH
Q 007785 114 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI--CDEAVVRNLVSKKHPNLAE 190 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l-~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~--~~~~~i~~ll~~~~~e~~e 190 (590)
++.++|+||+++++...++.+ +|||.||++||+.||..+|.+|...+++||.++|+.. +++..++.+++ +++++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~---~~~~~ 79 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA---AEIMQ 79 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSC---HHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCC---HHHHH
Confidence 356899999999876667776 6999999999999999999988766899999999999 99999999998 89999
Q ss_pred HHHHHHhhhhhhcC
Q 007785 191 KFERFLLESFIEDN 204 (590)
Q Consensus 191 ky~~~l~~~~v~~~ 204 (590)
+|.+++++.|++++
T Consensus 80 ky~~~~~~~~v~~~ 93 (94)
T 1wim_A 80 RYKKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHHHSSCSSC
T ss_pred HHHHHHHHhhhccC
Confidence 99999999988754
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.26 E-value=4.2e-13 Score=112.91 Aligned_cols=77 Identities=23% Similarity=0.526 Sum_probs=68.2
Q ss_pred chHHHHHHHHHhhhhhhcCcccccCCCCCCCCceEeecCcccceeecc-CCCeeecCccCcC---CCCCCchhhHHHHHh
Q 007785 186 PNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEA---HSPCSCSMWDLWAKK 261 (590)
Q Consensus 186 ~e~~eky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~---H~p~sC~~~~~w~~~ 261 (590)
++++++|++++++++|..++.++||| +|++++...+. ...|+|+ |+..||+.|+.+| |.|++|.++++|..+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP---~C~~~~~~~~~-~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA---QCSFGFIYERE-QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS---SSCCCEECCCS-CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc---CCCchheecCC-CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 67888999999999999999999999 89999886654 4568997 9999999999999 999999999999988
Q ss_pred hhchH
Q 007785 262 CRDES 266 (590)
Q Consensus 262 ~~~e~ 266 (590)
...++
T Consensus 80 n~~~~ 84 (86)
T 2ct7_A 80 NSGPS 84 (86)
T ss_dssp HTCSS
T ss_pred Ccccc
Confidence 66554
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-11 Score=102.62 Aligned_cols=65 Identities=26% Similarity=0.615 Sum_probs=57.7
Q ss_pred chHHHHHHHHHhhhhhhcCcccccCCCCCCCCceEeecCcccceeec------cCCCeeecCccCcCCCCCCchh
Q 007785 186 PNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVEC------ACGAQFCFSCLSEAHSPCSCSM 254 (590)
Q Consensus 186 ~e~~eky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C------~Cg~~fC~~C~~~~H~p~sC~~ 254 (590)
++++++|++++++++|..+. ++||| .|+|++++...+ ....+.| .|++.||+.|+.+||. .+|..
T Consensus 5 ~~~~~rY~~~~~e~~v~~~~-~~~CP-~p~C~~~v~~~~-~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 5 EEQYNRYQQYGAEECVLQMG-GVLCP-RPGCGAGLLPEP-DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCSCCCSSSCCSSCCCS-SCCCC-SSSCCCCCCCCS-CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred HHHHHHHHHHHHHHHhhhCC-cEECC-CCCCCcccEECC-CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 78899999999999999886 99999 699999998765 3445899 5999999999999999 99975
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=2.7e-11 Score=108.98 Aligned_cols=116 Identities=27% Similarity=0.608 Sum_probs=76.8
Q ss_pred ccccccccccccccc-----cCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchHHHHHHhcCCCchH
Q 007785 114 SSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNL 188 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~ 188 (590)
++.++|+||++.+.. ..++.++|||.||..||..|+... ..||. |+..+....+..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~l~~l-------- 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPI-------- 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTT--TCCBCTTTCEEEC--------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCC--CCCcCcccccccc--------
Confidence 356899999999752 122788999999999999998642 38998 8887754332211
Q ss_pred HHHHHHHHhhhhhhcCcccccCCCCCCCCceEeecC-cccceeeccCCCeeecCccCcCCCCCCchhhHHHHHhhhchHH
Q 007785 189 AEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE-VEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESE 267 (590)
Q Consensus 189 ~eky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~-~~~~~v~C~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e 267 (590)
++ +.....|| -|...+.... .....+..+||+.||..|... |..
T Consensus 67 -----------~i--~~~~~~C~---iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~~------- 111 (133)
T 4ap4_A 67 -----------YI--GSGTVSCP---ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SLK------- 111 (133)
T ss_dssp -----------BC--SSSSCBCT---TTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HHH-------
T ss_pred -----------cc--CCCCCCCC---CCCCccccccccCcceEeCCCCChhhHHHHHH------------HHH-------
Confidence 11 22334687 5765544211 111225568999999999653 321
Q ss_pred hHHHHHhCCcCCCCCCcceeec
Q 007785 268 TVNWITVHTKPCPKCHKPVEKN 289 (590)
Q Consensus 268 ~~~~i~~~tK~CPkC~~~IEKn 289 (590)
. .+.||.|+..|.++
T Consensus 112 ------~-~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 ------N-ANTCPTCRKKINHK 126 (133)
T ss_dssp ------H-CSBCTTTCCBCCGG
T ss_pred ------c-CCCCCCCCCcCChh
Confidence 1 27999999999865
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.54 E-value=6.1e-08 Score=91.32 Aligned_cols=84 Identities=27% Similarity=0.525 Sum_probs=58.1
Q ss_pred cccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchHHHHHHhcCCCchHHHHH
Q 007785 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKF 192 (590)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky 192 (590)
..+.+.|+||++.+. +++.++|||.||..||..++... ..+||. |+..+.... +.. ...+
T Consensus 15 ~~~~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~---~~~~--- 74 (170)
T 3hcs_A 15 LESKYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFP---DNFA--- 74 (170)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEE---CHHH---
T ss_pred CCCCCCCCCCChhhc--CcEECCCCCHHHHHHHHHHHHhC-------CCCCCC--CccCcchhh---hhh---hHHH---
Confidence 346799999999866 77889999999999999998753 138998 887776532 222 1111
Q ss_pred HHHHhhhhhhcCcccccCCCCCCCCceEeecC
Q 007785 193 ERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (590)
Q Consensus 193 ~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (590)
+..+. .....|| +.+|+..+....
T Consensus 75 -----~~~i~--~l~v~C~-n~GC~~~~~~~~ 98 (170)
T 3hcs_A 75 -----KREIL--SLMVKCP-NEGCLHKMELRH 98 (170)
T ss_dssp -----HHHHH--TSEEECC-STTCCCEEEGGG
T ss_pred -----HHHHh--hcccCCC-CCCCCceecHhH
Confidence 11111 1335899 579998888655
No 7
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=3.1e-07 Score=75.69 Aligned_cols=55 Identities=27% Similarity=0.691 Sum_probs=45.0
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
.+.+.|+||++.+. +++.++|||.||..|+..|+..+...+. ...||. |+..+..
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~~--~~~CP~--Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLT--QPLSLDCGHSFCQACLTANHKKSMLDKG--ESSCPV--CRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCS--SCBCCSSSCCBCTTHHHHHHHHHHHTTS--CCCCTT--TCCSSCS
T ss_pred cCCCCCCCCCcccC--CceeCCCCCHHHHHHHHHHHHHhhcCCC--CCcCCC--CCCccCH
Confidence 45689999999975 6778899999999999999988664433 579998 8877654
No 8
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=4.5e-07 Score=70.80 Aligned_cols=45 Identities=31% Similarity=0.705 Sum_probs=37.0
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccc
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMA 165 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~ 165 (590)
.+.+.|+||++.+. +++.++|||.||..|+..|+... + ...+||.
T Consensus 18 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~---~--~~~~CP~ 62 (63)
T 2ysj_A 18 QEEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGETS---C--GFFKCPL 62 (63)
T ss_dssp CCCCBCTTTCSBCS--SCEECTTSSEECHHHHHHHHHHC---S--SCCCCSC
T ss_pred ccCCCCCcCCchhC--CeEEeCCCCcchHHHHHHHHHcC---C--CCCcCcC
Confidence 45689999999876 78888999999999999999851 1 2468986
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.34 E-value=5.3e-08 Score=79.50 Aligned_cols=56 Identities=25% Similarity=0.578 Sum_probs=44.1
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
.+.++|+||++.+. +++.++|||.||..|+..|+......+. ....||. |+..+..
T Consensus 10 ~~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~~~~~~~~~~~-~~~~CP~--Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLSLDCGHSLCRACITVSNKEAVTSMG-GKSSCPV--CGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECS--SCCCCSSSCCCCHHHHSCCCCCCSSSCC-CCCCCSS--SCCCCCS
T ss_pred ccCCCCcCCCcccC--CeeECCCCCHHHHHHHHHHHHhcccCCC-CCCcCCC--CCCcCCH
Confidence 35689999999975 6778899999999999999876443222 3579998 8887754
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.5e-07 Score=75.63 Aligned_cols=53 Identities=30% Similarity=0.713 Sum_probs=42.1
Q ss_pred cccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
....+.|+||++.+. +++.++|||.||..|+..|+... .....||. |+..+..
T Consensus 17 ~~~~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGETS-----CGFFKCPL--CKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCS--SEEECTTCCEEEHHHHHHHCSSS-----CSCCCCSS--SCCCCCC
T ss_pred CccCCEeccCCcccC--CeEEcCCCChhhHHHHHHHHHcC-----CCCCCCCC--CCCcCCc
Confidence 345689999999876 78888999999999999998621 13478998 8877653
No 11
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.33 E-value=4.4e-07 Score=74.73 Aligned_cols=56 Identities=27% Similarity=0.607 Sum_probs=44.5
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchH
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~ 175 (590)
...+.|+||++.+. +++.++|||.||..|+..|+......+ ....||. |+..+...
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLK--EPVSADCNHSFCRACITLNYESNRNTD--GKGNCPV--CRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCS--SCEECTTSCCBCHHHHHHHHHHSBCTT--SCBCCTT--TCCCCCTT
T ss_pred ccCCCCcCCChhhC--cceeCCCCCHHHHHHHHHHHHhccCCC--CCCCCCC--CCCcCCHH
Confidence 45689999999975 677889999999999999998754222 2579998 88876543
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2e-07 Score=77.55 Aligned_cols=60 Identities=27% Similarity=0.690 Sum_probs=46.0
Q ss_pred ccccccccccccccccC--ceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchHHHHHH
Q 007785 114 SSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNL 180 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~--~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~~i~~l 180 (590)
.+.+.|+||++.+.... ++.++|||.||..|+..|+.... ..+.||. |+..+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~--Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-----NGVRCPF--CSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-----SCBCCTT--TCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-----CCcCCCC--CCCcccchhHHHH
Confidence 35689999999976432 77889999999999999998641 2479998 8887765544443
No 13
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.30 E-value=2.6e-07 Score=77.86 Aligned_cols=49 Identities=20% Similarity=0.674 Sum_probs=40.5
Q ss_pred ccccccccccccccccCceecC-CCCccchhhHHHHHHhhhhcCCccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~-CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~ 172 (590)
.+.+.|+||++.+. +++.++ |||.||..|+..++... + ...||. |+..+
T Consensus 11 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 60 (92)
T ss_dssp CTTTEETTTTEECS--SCEECTTTCCEECHHHHHHHHHHC---T---TCCCTT--TCCSS
T ss_pred CcCCCCCCCChhhc--CceECCCCCCHHHHHHHHHHHHhc---C---CCcCcC--CCCcC
Confidence 45689999999876 788898 99999999999998742 2 368998 88765
No 14
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=3.3e-07 Score=72.38 Aligned_cols=50 Identities=22% Similarity=0.623 Sum_probs=40.7
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
.+.+.|+||++.+. +++.++|||.||..|+..++.. ....||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--SPKQTECGHRFCESCMAALLSS-------SSPKCTA--CQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEES--SCCCCSSSCCCCHHHHHHHHTT-------SSCCCTT--TCCCCCT
T ss_pred CcCCCCCCCChHhc--CeeECCCCCHHHHHHHHHHHHh-------CcCCCCC--CCcCCCh
Confidence 45689999999875 6777899999999999999861 2368998 8877654
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=4e-07 Score=73.01 Aligned_cols=54 Identities=22% Similarity=0.525 Sum_probs=43.6
Q ss_pred cccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchHHHH
Q 007785 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVR 178 (590)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~~i~ 178 (590)
..+...|+||++.+. +++.++|||.||..|+..|+... ..||. |+..+....+.
T Consensus 12 ~~~~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~ 65 (71)
T 2d8t_A 12 SLTVPECAICLQTCV--HPVSLPCKHVFCYLCVKGASWLG--------KRCAL--CRQEIPEDFLD 65 (71)
T ss_dssp SSSCCBCSSSSSBCS--SEEEETTTEEEEHHHHHHCTTCS--------SBCSS--SCCBCCHHHHS
T ss_pred CCCCCCCccCCcccC--CCEEccCCCHHHHHHHHHHHHCC--------CcCcC--cCchhCHhhcc
Confidence 446689999999865 77888999999999999987531 58998 99888765543
No 16
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.25 E-value=8.6e-07 Score=78.41 Aligned_cols=84 Identities=26% Similarity=0.511 Sum_probs=58.2
Q ss_pred cccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchHHHHHHhcCCCchHHHHH
Q 007785 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKF 192 (590)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky 192 (590)
..+.+.|+||++.+. +++.++|||.||..|+..++... ...||. |+..+.... +.. ...
T Consensus 15 ~~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~---~~~---- 73 (118)
T 3hct_A 15 LESKYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFP---DNF---- 73 (118)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEE---CHH----
T ss_pred CCCCCCCCcCChhhc--CeEECCcCChhhHHHHHHHHhhC-------CCCCCC--CCCCcCHHh---ccc---CHH----
Confidence 346789999999865 77889999999999999998753 138998 888776532 222 111
Q ss_pred HHHHhhhhhhcCcccccCCCCCCCCceEeecC
Q 007785 193 ERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (590)
Q Consensus 193 ~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (590)
++..+. .....|| +.+|+..+.+..
T Consensus 74 ----l~~~i~--~l~v~C~-n~gC~~~~~~~~ 98 (118)
T 3hct_A 74 ----AKREIL--SLMVKCP-NEGCLHKMELRH 98 (118)
T ss_dssp ----HHHHHH--TSEEECS-STTCCCEEEGGG
T ss_pred ----HHHHHc--cceeECC-CCCCCCEEeeHH
Confidence 111111 1335899 589998888655
No 17
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.25 E-value=3.3e-07 Score=80.72 Aligned_cols=84 Identities=23% Similarity=0.570 Sum_probs=56.8
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchHHHHHHhcCCCchHHHHHH
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKFE 193 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky~ 193 (590)
.+.+.|+||++.+. +++.++|||.||..|+..++... ...||. |+..+....+...+ ..+.+
T Consensus 21 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~----~~l~~--- 82 (116)
T 1rmd_A 21 VKSISCQICEHILA--DPVETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV----KSFLN--- 82 (116)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC----HHHHH---
T ss_pred cCCCCCCCCCcHhc--CcEEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH----HHHHH---
Confidence 35689999999875 78889999999999999999762 257998 88877654322111 11111
Q ss_pred HHHhhhhhhcCcccccCCCCCCCCceEeecC
Q 007785 194 RFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (590)
Q Consensus 194 ~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (590)
++. ....+|| ..+|+..+....
T Consensus 83 --~i~------~l~v~C~-~~gC~~~~~~~~ 104 (116)
T 1rmd_A 83 --ILN------SLMVKCP-AQDCNEEVSLEK 104 (116)
T ss_dssp --HHH------HCEEECC-STTCCCEEEHHH
T ss_pred --HHH------HhcCCCC-CCCCcchhhHhH
Confidence 111 1234799 469998877543
No 18
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.25 E-value=2.4e-07 Score=75.53 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=41.2
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
.+.+.|+||++.+. +++.++|||.||..|+..|+.. | ...||. |+..+..
T Consensus 6 ~~~~~C~IC~~~~~--~Pv~~~CgH~fc~~Ci~~~~~~----~---~~~CP~--C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMK--DPVIVSTGQTYERSSIQKWLDA----G---HKTCPK--SQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCS--SEEEETTTEEEEHHHHHHHHTT----T---CCBCTT--TCCBCSS
T ss_pred cccCCCCCcccccc--CCEEcCCCCeecHHHHHHHHHH----C---cCCCCC--CcCCCCh
Confidence 35689999999865 7888999999999999999963 2 368998 8877654
No 19
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.24 E-value=5.7e-07 Score=76.47 Aligned_cols=56 Identities=25% Similarity=0.441 Sum_probs=44.4
Q ss_pred cccccccccccccccCceecC-CCCccchhhHHHHHHhhhhcCCcccccccccccccc-cch
Q 007785 115 STVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI-CDE 174 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~-CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~-~~~ 174 (590)
..+.|+||++.+. +++.++ |||.||+.|+..||...-..+ ....||..+|... +..
T Consensus 6 ~~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~--~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKRK--KKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHHHTTT--CCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHccCcC--CCCCCCcCcCcccccCH
Confidence 5689999999866 899995 999999999999998642111 3479999999865 543
No 20
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.24 E-value=5.4e-07 Score=74.02 Aligned_cols=53 Identities=28% Similarity=0.557 Sum_probs=40.5
Q ss_pred ccccccccccccccccCceecC--CCCccchhhHHHHHHhhhhcCCcccccccccccccccchH
Q 007785 114 SSTVMCDICMEEVAGDKATKMD--CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~--CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~ 175 (590)
.+.++|+||++.+...++..++ |||.||..||..++.. + ...||. |+..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~---~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E---NGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S---CSBCTT--TCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C---CCCCCC--CCCccCCC
Confidence 3568999999988654555444 9999999999998753 2 368998 98877543
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.20 E-value=4.3e-07 Score=78.05 Aligned_cols=51 Identities=25% Similarity=0.514 Sum_probs=42.2
Q ss_pred cccccccccccccccCcee-cCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchHH
Q 007785 115 STVMCDICMEEVAGDKATK-MDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~-l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~~ 176 (590)
+.+.|+||++.+. +++. ++|||.||..|+..|+... ...||. |+..+....
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGG
T ss_pred CCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHH
Confidence 5689999999976 7888 8999999999999999863 158998 888776543
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.19 E-value=1.3e-06 Score=70.59 Aligned_cols=49 Identities=20% Similarity=0.714 Sum_probs=40.4
Q ss_pred cccccccccccccccccCceecC-CCCccchhhHHHHHHhhhhcCCcccccccccccccc
Q 007785 113 LSSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI 171 (590)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~-CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~ 171 (590)
....+.|+||++.+. +++.++ |||.||..|+..|+... + ...||. |+..
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~ 61 (74)
T 2yur_A 12 IPDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQN 61 (74)
T ss_dssp SCGGGSCSSSCCCCT--TCEECSSSCCEECTTHHHHHHHHS---S---SSCCSS--SCCS
T ss_pred CCCCCCCcCCChHHh--CCeEcCCCCCHHHHHHHHHHHHhc---C---CCcCCC--CCCc
Confidence 346789999999876 788898 99999999999999852 2 368998 8874
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.4e-06 Score=71.65 Aligned_cols=48 Identities=29% Similarity=0.683 Sum_probs=40.2
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
...+.|+||++.+. +++.++|||.||..|+..++.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ--NPVVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC--SEEECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCcCCCchhc--CeeEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 35689999999975 6788999999999999999864 258998 887764
No 24
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.17 E-value=5.6e-07 Score=79.09 Aligned_cols=51 Identities=24% Similarity=0.613 Sum_probs=41.7
Q ss_pred cccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
..+.+.|+||++.+. +++.++|||.||..|+..++.. + ...||. |+..+..
T Consensus 12 ~~~~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILV--EPVTLPCNHTLCKPCFQSTVEK----A---SLCCPF--CRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCS--SCEECTTSCEECHHHHCCCCCT----T---TSBCTT--TCCBCHH
T ss_pred CCCCCCCccCCcccC--ceeEcCCCCHHhHHHHHHHHhH----C---cCCCCC--CCcccCc
Confidence 446789999999876 7888999999999999988753 2 368998 8887754
No 25
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.17 E-value=9.9e-07 Score=66.69 Aligned_cols=48 Identities=27% Similarity=0.643 Sum_probs=38.4
Q ss_pred cccccccccccccc--cCceecCCCCccchhhHHHHHHhhhhcCCccccccccccccccc
Q 007785 115 STVMCDICMEEVAG--DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (590)
Q Consensus 115 ~~~~C~IC~e~~~~--~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~ 172 (590)
....|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcC
Confidence 45789999999753 246677999999999999998863 57998 87655
No 26
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.17 E-value=7.3e-07 Score=77.67 Aligned_cols=53 Identities=23% Similarity=0.552 Sum_probs=42.3
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchHH
Q 007785 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~~ 176 (590)
..+.|+||++.+. +++.++|||.||..|+..++... . ....||. |+..+....
T Consensus 20 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~--Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIK--EPVSTKCDHIFCKFCMLKLLNQK--K---GPSQCPL--CKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCS--SCCBCTTSCCCCSHHHHHHHHSS--S---SSCCCTT--TSCCCCTTT
T ss_pred CCCCCcccChhhc--CeEECCCCCHHHHHHHHHHHHhC--C---CCCCCcC--CCCcCCHhh
Confidence 3578999999865 77788999999999999999853 1 2378998 888776543
No 27
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.16 E-value=1.1e-06 Score=80.44 Aligned_cols=48 Identities=23% Similarity=0.635 Sum_probs=39.3
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~ 172 (590)
.+.+.|+||++.+. +++.++|||.||..|+..++.. + ...||. |+..+
T Consensus 29 ~~~~~C~IC~~~~~--~pv~~~CgH~FC~~Ci~~~~~~----~---~~~CP~--Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLR--RPFQAQCGHRYCSFCLASILSS----G---PQNCAA--CVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHGGG----S---CEECHH--HHHTT
T ss_pred CcCcCCCCCChhhc--CcEECCCCCccCHHHHHHHHhc----C---CCCCCC--CCCcc
Confidence 46789999999875 7788999999999999999853 2 368998 77643
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.8e-06 Score=69.28 Aligned_cols=49 Identities=33% Similarity=0.843 Sum_probs=40.3
Q ss_pred ccccccccccccccccCceec-CCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 114 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l-~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
.+.+.|+||++.+. +++.+ +|||.||..|+..|+.. ...||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCS
T ss_pred CCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCc
Confidence 45789999999876 57776 99999999999999965 258998 8877654
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.14 E-value=9.8e-07 Score=78.63 Aligned_cols=49 Identities=29% Similarity=0.571 Sum_probs=40.8
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
..+.|+||++.+. +++.++|||.||..|+..++.. ....||. |+..+..
T Consensus 51 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--RPITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHHc--CcEEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 4688999999976 7888999999999999999972 2368998 8877654
No 30
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.12 E-value=3.3e-07 Score=73.10 Aligned_cols=52 Identities=29% Similarity=0.703 Sum_probs=40.2
Q ss_pred ccccccccccccccc-----cCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchH
Q 007785 114 SSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~ 175 (590)
.+...|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChh
Confidence 356899999998752 122678999999999999998742 48998 88776543
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.11 E-value=8.5e-07 Score=75.79 Aligned_cols=48 Identities=25% Similarity=0.661 Sum_probs=39.8
Q ss_pred cccccccccccccccCceec-CCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
+.+.|+||++.+. +++.+ +|||.||..|+..|+.. ...||. |+..+..
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCG
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCCh
Confidence 4689999999976 67777 99999999999999873 258998 8887764
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.11 E-value=8.9e-07 Score=80.55 Aligned_cols=46 Identities=30% Similarity=0.717 Sum_probs=38.1
Q ss_pred ccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 116 TVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
.++|+||++.+. +++.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 53 ~~~C~iC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFI--EAVTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCS--SEEEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCC
T ss_pred cCCCcccCcccC--CceECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCC
Confidence 468999999975 7888999999999999999753 247998 877653
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.9e-06 Score=65.82 Aligned_cols=45 Identities=27% Similarity=0.729 Sum_probs=35.8
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccc
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMA 165 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~ 165 (590)
.+...|+||++.+. +++.++|||.||..|+..|+... . ....||.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYLK--EPVIIECGHNFCKACITRWWEDL--E---RDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBCS--SCCCCSSCCCCCHHHHHHHTTSS--C---CSCCCSC
T ss_pred ccCCCCccCCcccC--ccEeCCCCCccCHHHHHHHHHhc--C---CCCCCCC
Confidence 35689999999976 67788999999999999997641 1 2368886
No 34
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.7e-06 Score=68.39 Aligned_cols=50 Identities=30% Similarity=0.707 Sum_probs=38.9
Q ss_pred cccccccccccccccc-----CceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGD-----KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~-----~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
.....|+||++.+... .++.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 4568999999987521 1267899999999999999875 248998 877654
No 35
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.08 E-value=4.2e-07 Score=70.80 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=39.6
Q ss_pred cccccccccccccc-----cCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchH
Q 007785 115 STVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (590)
Q Consensus 115 ~~~~C~IC~e~~~~-----~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~ 175 (590)
+...|+||++.+.. ..++.++|||.||..|+..|+.. ...||. |+..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCcc
Confidence 35789999998752 12367799999999999999875 248998 88877643
No 36
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.07 E-value=2.4e-06 Score=71.17 Aligned_cols=50 Identities=6% Similarity=0.020 Sum_probs=41.6
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchH
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~ 175 (590)
...+.|+||++.+. +++.++|||.||+.|+..||.. ...||. |+..+...
T Consensus 12 p~~~~CpI~~~~m~--dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT--DPVRLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGG
T ss_pred chheECcccCchhc--CCeECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChH
Confidence 45799999999966 8999999999999999999974 147998 77766543
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.06 E-value=1.8e-06 Score=67.78 Aligned_cols=51 Identities=22% Similarity=0.499 Sum_probs=38.1
Q ss_pred ccccccccc-cccccC--ceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchH
Q 007785 116 TVMCDICME-EVAGDK--ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (590)
Q Consensus 116 ~~~C~IC~e-~~~~~~--~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~ 175 (590)
...|+||++ .+.... ++.++|||.||..|+..++.. + ...||. |+..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G---AGNCPE--CGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T---SSSCTT--TCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C---CCcCCC--CCCccccc
Confidence 478999999 554211 246799999999999999863 2 368998 88877544
No 38
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.02 E-value=5e-06 Score=65.93 Aligned_cols=50 Identities=20% Similarity=0.574 Sum_probs=39.3
Q ss_pred ccccccccccccccc-cCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAG-DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~-~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
.....|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCcccc
Confidence 346789999998754 356678999999999999998751 36998 887654
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.99 E-value=2.6e-06 Score=78.68 Aligned_cols=50 Identities=28% Similarity=0.602 Sum_probs=41.5
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchH
Q 007785 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~ 175 (590)
+.+.|+||++.+. +++.++|||.||..|+..++.. + ...||. |+..+...
T Consensus 77 ~~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--QPVTTECFHNVCKDCLQRSFKA----Q---VFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT----T---CCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhc--CCEEcCCCCchhHHHHHHHHHh----C---CCcCCC--CCccCCCC
Confidence 4689999999876 7888999999999999999974 2 368998 88876543
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.98 E-value=2.8e-06 Score=73.73 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=39.1
Q ss_pred cccccccccccccccCceec-CCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
..+.|+||++.+. +++.+ +|||.||..|+..++... ..||. |+..+.
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETS--------KYCPI--CDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSC--------SBCTT--TCCBSC
T ss_pred CcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhC--------CcCcC--CCcccc
Confidence 5689999999976 67887 999999999999998752 58998 876654
No 41
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.92 E-value=5.1e-06 Score=82.87 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=44.9
Q ss_pred cccccccccccccccccCceec-CCCCccchhhHHHHHHhhhhcCCcccccccccccccccchH
Q 007785 113 LSSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (590)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l-~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~ 175 (590)
....+.||||++.+. +|++. .|||.||+.|+..||.. .| ...||..||...+...
T Consensus 178 ~~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~---~~---~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQG---YT---TRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTT---CS---CEECSGGGCSCEECGG
T ss_pred CceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHh---CC---CCCCCcccccCcCchh
Confidence 346789999999976 78875 99999999999999974 22 3789999999876543
No 42
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=1.4e-06 Score=76.87 Aligned_cols=45 Identities=20% Similarity=0.570 Sum_probs=38.1
Q ss_pred cccccccccccccccCceec-CCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
+.+.|+||++.+. +++.+ +|||.||..|+..++. ..||. |+..+.
T Consensus 21 ~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCS
T ss_pred hCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCc
Confidence 4589999999976 78888 9999999999998875 57998 887664
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=2.2e-06 Score=65.53 Aligned_cols=44 Identities=23% Similarity=0.603 Sum_probs=35.7
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
+.+.|+||++.+. +++.++|||.||..|+.. ....||. |+..+.
T Consensus 5 ~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSS
T ss_pred cCCCceEeCCccC--CeEEcCCCCcccHHHHcc-----------CCCCCCc--CCcEee
Confidence 4578999999876 678899999999999866 1368998 877553
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.85 E-value=6e-06 Score=70.99 Aligned_cols=49 Identities=6% Similarity=-0.016 Sum_probs=41.3
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
...+.|+||++.+. +++.++|||.||+.|+..||.. ...||. |+..+..
T Consensus 27 p~~~~CpI~~~~m~--dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT--DPVRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS--SEEEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCT
T ss_pred cHhhCCcCccCccc--CCeECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCCh
Confidence 46799999999966 8999999999999999999973 147998 7776654
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.85 E-value=5.8e-06 Score=62.41 Aligned_cols=48 Identities=25% Similarity=0.619 Sum_probs=37.1
Q ss_pred cccccccccccccc-cCceecC-CCCccchhhHHHHHHhhhhcCCccccccccccccccc
Q 007785 115 STVMCDICMEEVAG-DKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (590)
Q Consensus 115 ~~~~C~IC~e~~~~-~~~~~l~-CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~ 172 (590)
+...|+||++.+.. ..+..++ |||.||..|+..|+.. ...||. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEe
Confidence 45789999999764 3356676 9999999999999753 247998 87654
No 46
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.85 E-value=9.2e-06 Score=65.98 Aligned_cols=51 Identities=22% Similarity=0.500 Sum_probs=39.8
Q ss_pred cccccccccccccccc-CceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 114 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~-~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
.....|+||++.+... .+..++|||.||..|+..|+... ..||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--------DSCPV--CRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--------CSCTT--TCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--------CcCcC--cCCccCC
Confidence 4568999999997643 34567999999999999998531 48998 8877654
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.83 E-value=8.6e-06 Score=69.77 Aligned_cols=49 Identities=4% Similarity=-0.072 Sum_probs=41.4
Q ss_pred ccccccccccccccccCceecCCC-CccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCG-HCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
.+.+.|+||++.+. +++.++|| |.||+.|+..||.. ...||. |+..+..
T Consensus 20 p~~~~CpI~~~~m~--dPV~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC--DPVVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCT
T ss_pred cHhcCCcCcccccc--CCeECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCCh
Confidence 46799999999966 89999999 99999999999974 147998 7777654
No 48
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.82 E-value=8.7e-06 Score=64.26 Aligned_cols=48 Identities=25% Similarity=0.612 Sum_probs=37.6
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
....|+||++.+. +.++.++|||.||..|+..|+... ..||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCC
T ss_pred CCCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhH
Confidence 3468999999865 224678999999999999998641 47998 887664
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.81 E-value=1.1e-05 Score=70.56 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=38.1
Q ss_pred cccccccccccccc----------------CceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 116 TVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 116 ~~~C~IC~e~~~~~----------------~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
...|+||++.+... ....++|+|.||..|+..|+...-.. ....||. |+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~---~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD---GSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS---SCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC---CCCcCCC--CCCccC
Confidence 35899999997421 11256999999999999999542211 2468998 887664
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.80 E-value=1.1e-05 Score=65.21 Aligned_cols=50 Identities=22% Similarity=0.536 Sum_probs=39.1
Q ss_pred ccccccccccccccccC-ceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGDK-ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~-~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
.+...|+||++.+.... +..++|||.||..|+..|+... ..||. |+..+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCC
Confidence 35678999999976433 4567999999999999998641 37998 887654
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=1.5e-05 Score=64.02 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=38.7
Q ss_pred cccccccccccccccc-CceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~-~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
.....|+||++.+... ....++|+|.||..|+..|+... ..||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 3467899999997643 34556999999999999998752 37998 887653
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.80 E-value=1.2e-05 Score=80.80 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=41.9
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchH
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~ 175 (590)
...+.|+||++.+. +|+.++|||.||+.|+..||.. .+ ..||. |+..+...
T Consensus 206 ~~~~~c~i~~~~~~--dPv~~~~gh~f~~~~i~~~~~~---~~----~~cP~--~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMR--EPCITPSGITYDRKDIEEHLQR---VG----HFNPV--TRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCS--SEEECSSCCEEETTHHHHHHHH---TC----SSCTT--TCCCCCGG
T ss_pred CcccCCcCcCCHhc--CCeECCCCCEECHHHHHHHHHH---CC----CCCcC--CCCCCchh
Confidence 46799999999966 8999999999999999999975 12 24998 88877643
No 53
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.79 E-value=1.2e-05 Score=67.56 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=39.1
Q ss_pred ccccccccccccccccC-ceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGDK-ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~-~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
.....|+||++.+...+ +..++|||.||..|+..|+.. ...||. |+..++
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCC
Confidence 35678999999976433 566799999999999999853 138998 887664
No 54
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.77 E-value=9.6e-06 Score=75.81 Aligned_cols=49 Identities=29% Similarity=0.698 Sum_probs=39.8
Q ss_pred ccccccccccccccccCceec-CCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l-~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
...+.|+||++.+. +++.+ +|||.||..|+..++.. + ...||. |+..+.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS----G---NKECPT--CRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT----T---CCBCTT--TCCBCC
T ss_pred CCCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh----C---cCCCCC--CCCcCC
Confidence 35689999999976 67776 99999999999999873 1 368998 887663
No 55
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=6.6e-06 Score=65.41 Aligned_cols=47 Identities=26% Similarity=0.579 Sum_probs=37.5
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
.+...|+||++.+. + +.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSDR--------HRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSCC--------CSSCHH--HHHCTT
T ss_pred CCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHHC--------cCcCCC--cCCccc
Confidence 35689999999976 3 77899999999999998752 358998 776554
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.57 E-value=1.8e-05 Score=64.04 Aligned_cols=43 Identities=26% Similarity=0.689 Sum_probs=35.3
Q ss_pred cccccccccccccccCceecCCCCc-cchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
+...|+||++.+. +++.++|||. ||..|+..+ ..||. |+..+.
T Consensus 23 ~~~~C~iC~~~~~--~~~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNI--AIVFVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBC--CEEEETTCCBCCCHHHHTTC------------SBCTT--TCCBCS
T ss_pred cCCCCCCCCCCCC--CEEEcCCCChhHHHHhhhcC------------ccCCC--cCcCcc
Confidence 4578999999865 7888899999 999998765 48998 887654
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.56 E-value=3.7e-05 Score=72.94 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=42.0
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchH
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~ 175 (590)
...+.|+||++.+. +|+.++|||.||+.|+..||.. .|. .||. |+..+...
T Consensus 104 p~~f~CPI~~elm~--DPV~~~~Ghtfer~~I~~~l~~---~~~----tcP~--t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMR--EPCITPSGITYDRKDIEEHLQR---VGH----FDPV--TRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHH---TCS----BCTT--TCCBCCGG
T ss_pred cHhhcccCccccCC--CCeECCCCCEECHHHHHHHHHh---CCC----CCCC--CcCCCChh
Confidence 36799999999966 8999999999999999999975 232 6998 77776543
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=3.7e-05 Score=62.22 Aligned_cols=43 Identities=26% Similarity=0.689 Sum_probs=34.5
Q ss_pred cccccccccccccccCceecCCCCc-cchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
+...|+||++.+. +++.++|||. ||..|+.. ...||. |+..+.
T Consensus 24 ~~~~C~IC~~~~~--~~~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNI--AIVFVPCGHLVTCKQCAEA------------VDKCPM--CYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCC--CBCCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCC
T ss_pred CCCCCCcCCCCCC--CEEEecCCCHHHHHHHhhC------------CCCCcc--CCceec
Confidence 4578999999865 7888899999 99999842 158998 887654
No 59
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00011 Score=60.39 Aligned_cols=49 Identities=27% Similarity=0.476 Sum_probs=34.8
Q ss_pred cccccccccccccc------------cCceec-CCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 115 STVMCDICMEEVAG------------DKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 115 ~~~~C~IC~e~~~~------------~~~~~l-~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
+..+|+||++.+.. +.++.+ +|||.||..|+..++... -.||. |+..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcc
Confidence 34567777777632 224455 699999999999998752 38998 887654
No 60
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.27 E-value=0.00012 Score=61.07 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=39.7
Q ss_pred CcCCCCCCcceeecCCCCeeEe-ccCceeeccccccccCCCcccccCCcccCCcc
Q 007785 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDHTWSRIAGHSCGRYK 329 (590)
Q Consensus 276 tK~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~~~~H~w~~~~g~~C~~y~ 329 (590)
.+-||.|...+....+-..++| .|++.||+.|..+|...| .|..|..|+
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H-----~~~sC~~~~ 74 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH-----RGRSCEDFQ 74 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT-----TTSCHHHHH
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC-----CCCChHHHH
Confidence 3569999999988888888999 599999999999974444 456787554
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.21 E-value=0.00012 Score=57.36 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=37.6
Q ss_pred cccccccccccccccccCceec--CCCCc-cchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 113 LSSTVMCDICMEEVAGDKATKM--DCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l--~CgH~-FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
..+...|.||++... +++.+ +|||. ||..|...++.. + -.||. |+..+.
T Consensus 5 ~~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~----~----~~CPi--CR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKR----N----KPCPV--CRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHT----T----CCCTT--TCCCCC
T ss_pred CCCcCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHc----C----CcCCC--cCcchh
Confidence 345678999999854 56655 99999 899999988752 1 37998 887653
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.20 E-value=0.00017 Score=76.21 Aligned_cols=47 Identities=26% Similarity=0.558 Sum_probs=38.4
Q ss_pred cccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 117 VMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 117 ~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
..|+||++.+. +++.++|||.||..|+..++.. + ...||. |+..+..
T Consensus 333 ~~C~ICle~~~--~pv~lpCGH~FC~~Ci~~wl~~----~---~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDK--DVKIEPCGHLMCTSCLTSWQES----E---GQGCPF--CRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBC--CEEEETTCCEECHHHHHHHHHH----T---CSBCTT--TCCBCCE
T ss_pred CCCCccCcCCC--CeEEeCCCChhhHHHHHHHHhc----C---CCCCCC--CCCccCC
Confidence 68999999865 7888999999999999998863 1 258998 8876543
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.17 E-value=8.7e-05 Score=60.82 Aligned_cols=43 Identities=28% Similarity=0.743 Sum_probs=34.7
Q ss_pred ccccccccccccccCceecCCCCc-cchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 116 TVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l~CgH~-FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
...|.||++... +++.++|||. ||..|+..+ ..||. |+..+..
T Consensus 18 ~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI--NSTFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC--CEEEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCEeEEeCcccC--cEEEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 468999999855 7888999999 999998743 28998 8876643
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.00049 Score=56.52 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=41.1
Q ss_pred ccccccccccccccccCceecCCC-----CccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCG-----HCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
.+...|.||++++...+...++|+ |.|+..|+..|+... + ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~---~~~Cpl--Cr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D---TRCCEL--CKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C---CSBCSS--SCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C---CCCCCC--CCCeee
Confidence 345789999998876566678996 999999999999863 2 268999 887653
No 65
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.11 E-value=0.00014 Score=64.57 Aligned_cols=53 Identities=28% Similarity=0.676 Sum_probs=41.0
Q ss_pred ccccccccccccccc-----cCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccchHH
Q 007785 114 SSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~~~ 176 (590)
.....|+||++.+.. ..++.++|||.||..|+..|+.. .-.||. |+..+....
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--------CCCCCC--CCCcCChhc
Confidence 456889999998752 12367799999999999999875 148998 888776543
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.0004 Score=55.11 Aligned_cols=44 Identities=18% Similarity=0.560 Sum_probs=35.3
Q ss_pred ccccccccccccccccCceecCCCCc-cchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 114 SSTVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~-FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
.+...|.||++... +++.++|||. ||..|... ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV--NWVLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCC--CCEETTTTBCCSCTTHHHH------------CSSCTT--TCCCCC
T ss_pred CCCCCCCCcCcCCC--CEEEECCCChhhhHHHHhc------------CCCCCC--CCcchh
Confidence 34678999999854 7888999999 99999983 147998 887654
No 67
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.03 E-value=0.00027 Score=55.15 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=35.9
Q ss_pred cccccccccccccccCceec--CCCCc-cchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKM--DCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l--~CgH~-FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
....|.||++... +++.+ +|||. ||..|...++.. + -+||. |+..+.
T Consensus 6 ~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~----~----~~CPi--CR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR--DGNIIHGRTGHLVTCFHCARRLKKA----G----ASCPI--CKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS--CEEEEETTEEEEEECHHHHHHHHHT----T----CBCTT--TCCBCC
T ss_pred cCCCCcccCCcCC--CeEEEecCCCCHhHHHHHHHHHHHh----C----CcCCC--cCchhh
Confidence 4578999999754 45555 99998 999999987653 1 47998 887653
No 68
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.83 E-value=0.00055 Score=59.30 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=36.4
Q ss_pred ccccccccccccccc----------------CceecCCCCccchhhHHHHHHhhhhcCCccccccccccccccc
Q 007785 115 STVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~ 172 (590)
...+|.||++.+... ..+.++|+|.|+..|+..|+.. ...||. |+..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcc
Confidence 346799999887632 1345699999999999999874 247998 87754
No 69
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.70 E-value=0.00066 Score=55.75 Aligned_cols=38 Identities=32% Similarity=0.627 Sum_probs=34.4
Q ss_pred CcCCCC--CCcceeecCCCCeeEe------ccCceeeccccccccC
Q 007785 276 TKPCPK--CHKPVEKNGGCNLVSC------ICGQAFCWLCGGATGR 313 (590)
Q Consensus 276 tK~CPk--C~~~IEKn~GCNHMtC------~Cg~~FCwlC~~~~~~ 313 (590)
.+-||. |+..|....+...++| .|++.||+.|+.+||.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 588998 9999998889999999 6999999999999753
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.46 E-value=0.00065 Score=70.97 Aligned_cols=43 Identities=26% Similarity=0.755 Sum_probs=35.4
Q ss_pred cccccccccccccccCceecCCCCc-cchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
+...|+||++.+. +++.++|||. ||..|+..+ ..||. |+..+.
T Consensus 294 ~~~~C~IC~~~~~--~~v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEV--SVVFIPCGHLVVCQECAPSL------------RKCPI--CRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBC--CEEEETTCCEEECTTTGGGC------------SBCTT--TCCBCC
T ss_pred CCCCCCccCCcCC--ceEEcCCCChhHhHHHHhcC------------CcCCC--CCCCcc
Confidence 4578999999865 7888999999 999998754 47998 887654
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.03 E-value=0.0011 Score=58.55 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=0.4
Q ss_pred cccccccccccccc----------------CceecCCCCccchhhHHHHHHhhhhcCCccccccccccccccc
Q 007785 116 TVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (590)
Q Consensus 116 ~~~C~IC~e~~~~~----------------~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~ 172 (590)
...|.||++.+... .++.++|+|.||..|+..|+... -.||. |+..+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP~--Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPL--DNREW 110 (117)
T ss_dssp C------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCCC--CCCee
Confidence 46899999997531 11234899999999999998751 47998 87654
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.92 E-value=0.0041 Score=64.17 Aligned_cols=113 Identities=17% Similarity=0.176 Sum_probs=66.7
Q ss_pred CCeEeeCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhcChhhhhHhhCC-cccCCCCCC-----
Q 007785 37 SSTKVITRESLLAAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVENGKESLFNEAGV-TVIDDADPM----- 110 (590)
Q Consensus 37 ~~~~vlt~~~i~~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~~~~~~~~~~~gl-~~~~~~~~~----- 110 (590)
.....|-++.....+++.+.+= -.+|+.++-+-. .+..-.|+ ..+.+....
T Consensus 246 Pe~~FlGpd~~V~~Lr~~l~~N----------------l~~Wd~d~si~e-------NL~~IL~i~~fP~p~~~~~~~~~ 302 (381)
T 3k1l_B 246 MSLKIIGPTEEVARLRHVLSDG----------------LSNWDSEMNIHK-------NLLRMFDLCYFPMPDWSDGPKLD 302 (381)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH----------------HHTCCTTSCHHH-------HHHHHTTCSSCCCCCGGGCCSCT
T ss_pred ceeEEECChhHhHHHHHHHhhh----------------hhhcCccCCHHH-------HHHHHhCccccCCCccccccccc
Confidence 3577788887776666554321 248887652211 12223344 222221111
Q ss_pred CCcccccccccccccccc-cCce-----ecCCCCccchhhHHHHHHhhhhcCCccc---ccccccccccccch
Q 007785 111 LPLSSTVMCDICMEEVAG-DKAT-----KMDCGHCFCNDCWTEHFIVKINEGQSKR---IRCMAHKCNAICDE 174 (590)
Q Consensus 111 ~~~~~~~~C~IC~e~~~~-~~~~-----~l~CgH~FC~~C~~~yi~~~I~~g~~~~---i~CP~~~C~~~~~~ 174 (590)
.......+|+||++.+.. ..+. ...|+|.|...|+..|+.+.-...+++. =.||. |+..++-
T Consensus 303 e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 303 EEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp TCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred ccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 122356789999998654 2221 2479999999999999987654333322 27997 9887653
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.20 E-value=0.0075 Score=46.67 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=36.7
Q ss_pred ccccccccccccccCceec-CCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 116 TVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l-~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
.+.|+||++.+. +++.+ +|||.|++.|+..|+.. +| +||. .+..+..
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~---~~-----~cP~--t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKD---TG-----NDPI--TNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHH---HS-----BCTT--TCCBCCG
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHh---CC-----CCcC--CcCCCCh
Confidence 478999999865 88888 99999999999999975 22 4888 4454543
No 74
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.61 E-value=0.013 Score=47.34 Aligned_cols=50 Identities=22% Similarity=0.479 Sum_probs=37.0
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhhcCCcccccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~ 173 (590)
....|.||++.+.... .-..|+|.|...|+..||...- .-.||. |+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~------~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNA------EPRCPH--CNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCS------SCCCTT--TCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcC------CCCCCC--CcCcCC
Confidence 4578999999986432 2228999999999999997521 147998 876553
No 75
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=93.61 E-value=0.16 Score=36.58 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 007785 51 QKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (590)
Q Consensus 51 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~~ 90 (590)
+++.|..-+.+.|.++..|+.+|..++||.+.-+..|++.
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5667888999999999999999999999999999999963
No 76
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.62 E-value=0.063 Score=45.47 Aligned_cols=44 Identities=27% Similarity=0.561 Sum_probs=29.7
Q ss_pred ccccccccccccCcee-cCCCCccchhhHHHHHHhhhhcCCccccccccccccccc
Q 007785 118 MCDICMEEVAGDKATK-MDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (590)
Q Consensus 118 ~C~IC~e~~~~~~~~~-l~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~ 172 (590)
-|++|--.+. ...+ ++|.|.||.+|...+..... -.||. |...+
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~-------k~Cp~--C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGD-------KMCPG--CSDPV 47 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTC-------CBCTT--TCCBC
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccC-------CCCcC--cCCee
Confidence 4777755543 3334 49999999999999876421 25776 66654
No 77
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.92 E-value=0.37 Score=37.24 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 007785 50 AQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (590)
Q Consensus 50 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~~ 90 (590)
.|++.|..-+.+.+.++..|+.+|..++||.+.-+..||+.
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45677899999999999999999999999999999999964
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.91 E-value=0.022 Score=48.17 Aligned_cols=75 Identities=23% Similarity=0.425 Sum_probs=47.1
Q ss_pred ceeec-cCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCC-CcceeecCCCCeeEe-ccCceee
Q 007785 228 CEVEC-ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKC-HKPVEKNGGCNLVSC-ICGQAFC 304 (590)
Q Consensus 228 ~~v~C-~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC-~~~IEKn~GCNHMtC-~Cg~~FC 304 (590)
....| .|++.||..|...+|....-...+.......+. ......|+.+ +.+++ ++| .|+...|
T Consensus 17 av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~-------~~~~~~C~~H~~e~l~-------~fC~~~~~~iC 82 (101)
T 2jun_A 17 AVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDS-------HIRGLMCLEHEDEKVN-------MYCVTDDQLIC 82 (101)
T ss_dssp CCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSC-------CSSCCCCSSCSSSCCC-------EEETTTTEEEC
T ss_pred ceEECCcCChHHhHHHCHHHhccCCccCCCeeecccccc-------CccCCcCcCcCCCcce-------EECCCCCCccc
Confidence 34689 599999999998877632211111111111100 0123579999 57888 999 5999999
Q ss_pred ccccc-cccCCCc
Q 007785 305 WLCGG-ATGRDHT 316 (590)
Q Consensus 305 wlC~~-~~~~~H~ 316 (590)
+.|.. ..+++|.
T Consensus 83 ~~C~~~~~H~~H~ 95 (101)
T 2jun_A 83 ALCKLVGRHRDHQ 95 (101)
T ss_dssp HHHHHHTTTSSSC
T ss_pred hhcCCCCCcCCCC
Confidence 99985 4455553
No 79
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.03 E-value=0.094 Score=40.37 Aligned_cols=37 Identities=32% Similarity=0.768 Sum_probs=29.6
Q ss_pred ccccCCCCCCCCceEeecCcccceeecc---CCCeeecCccCcC
Q 007785 206 MVKWCPSTPHCGNAIRVEEVEVCEVECA---CGAQFCFSCLSEA 246 (590)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~---Cg~~fC~~C~~~~ 246 (590)
+.+.|| .|+..|...+ ....++|. |++.||+.|+.+|
T Consensus 5 ~~k~CP---~C~~~Iek~~-GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP---KCHVTIEKDG-GCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT---TTCCCCSSCC-SCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc---CCCCeeEeCC-CCCcEEECCCCcCCEEeeCcCCCc
Confidence 457898 7998888544 45568995 9999999999876
No 80
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.81 E-value=0.092 Score=44.25 Aligned_cols=33 Identities=27% Similarity=0.815 Sum_probs=25.1
Q ss_pred ccccccccccccccCcee--cCCCCccchhhHHHHH
Q 007785 116 TVMCDICMEEVAGDKATK--MDCGHCFCNDCWTEHF 149 (590)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~--l~CgH~FC~~C~~~yi 149 (590)
...|+||.+.+.. +++. +.|+|.||..|+..+.
T Consensus 3 e~~C~~C~~~~~~-~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCC-BCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCC-CceEECCcCChHHhHHHCHHHh
Confidence 4789999976322 3344 7999999999999843
No 81
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.47 E-value=0.22 Score=38.15 Aligned_cols=48 Identities=21% Similarity=0.540 Sum_probs=35.0
Q ss_pred cccccccccccccccCceecCCC--C---ccchhhHHHHHHhhhhcCCccccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKMDCG--H---CFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~Cg--H---~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~ 172 (590)
+...|.||+++.. +...+||. | .|...|+..|+..+ + ...||. |+..+
T Consensus 5 ~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~---~---~~~C~~--C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTIS---R---NTACQI--CGVVY 57 (60)
T ss_dssp SCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHH---T---CSBCTT--TCCBC
T ss_pred CCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhC---C---CCccCC--CCCee
Confidence 4568999999743 33446754 4 89999999999763 2 268998 87655
No 82
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=90.34 E-value=0.67 Score=36.75 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 007785 50 AQKEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVEN 90 (590)
Q Consensus 50 ~~~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~e~l~~~~~~~ 90 (590)
.+...|..|.++| .+..+.+..+|.+|+-|+|.+++.+++.
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4667899999999 7999999999999999999999999973
No 83
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.18 E-value=0.52 Score=40.16 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 007785 51 QKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (590)
Q Consensus 51 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~~ 90 (590)
++++|..|+++.|++.+.|+..|...+|+++..++.+++.
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3678999999999999999999999999999999999964
No 84
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.84 E-value=0.34 Score=39.10 Aligned_cols=67 Identities=22% Similarity=0.466 Sum_probs=46.5
Q ss_pred cccccccccccccccccCceecC--CCCccchhhHHHHHHhhhhcCCcccccccc-cccccc-------cchHHHHHHhc
Q 007785 113 LSSTVMCDICMEEVAGDKATKMD--CGHCFCNDCWTEHFIVKINEGQSKRIRCMA-HKCNAI-------CDEAVVRNLVS 182 (590)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~--CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~-~~C~~~-------~~~~~i~~ll~ 182 (590)
......|.+|-+.+....++..+ =.|.||..|-+.+|..+-..+ .+.||. .+|... +....|..+|.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~---EvyCPSG~kCpL~gS~~PWAFmqgEIatILg 88 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG---EVYCPSGEKCPLVGSNVPWAFMQGEIATILS 88 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS---CCCCTTSSCCBCSSSSSBCCCCHHHHHHHHS
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC---cEECCCCCccccCCCcCchHHHhhHHHHHhc
Confidence 45678999999987765666553 369999999999999875543 477876 355531 23445666665
No 85
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.78 E-value=1.2 Score=34.98 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHcCCChHHHHHHHHhc
Q 007785 50 AQKEDLRRVMELLS-LREHHARTLLIHYRWDVEKLLAVLVEN 90 (590)
Q Consensus 50 ~~~~~i~~v~~~l~-i~~~~a~~LL~~~~W~~e~l~~~~~~~ 90 (590)
.+++.|..-+.+.+ ..+..|+.+|..++||.+..+..||+.
T Consensus 17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35667899999999 888999999999999999999999963
No 86
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=86.36 E-value=1.2 Score=30.72 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHH
Q 007785 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVL 87 (590)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~ 87 (590)
.+.|.+++++ |.+...|+..|+..+||++.-++.+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568888887 9999999999999999999877654
No 87
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.58 E-value=0.28 Score=37.58 Aligned_cols=32 Identities=31% Similarity=0.800 Sum_probs=23.1
Q ss_pred cCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceeec
Q 007785 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKN 289 (590)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn 289 (590)
+||+.||..|... |. ..+...||.|+.++.++
T Consensus 25 ~CgH~fC~~Ci~~------------~~-------------~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 25 VCGHTLCESCVDL------------LF-------------VRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCCEEHHHHHH------------HH-------------HTTSSSCTTTCCCCSSC
T ss_pred CCCCHhHHHHHHH------------HH-------------HcCCCcCCCCCCccccc
Confidence 6999999998642 21 12236899999998753
No 88
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=83.93 E-value=0.56 Score=39.69 Aligned_cols=48 Identities=31% Similarity=0.768 Sum_probs=33.2
Q ss_pred cCCCCCCCCceEeecCcccceeec-cCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCccee
Q 007785 209 WCPSTPHCGNAIRVEEVEVCEVEC-ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (590)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IE 287 (590)
+|+ .|+-.|..-+ .- ||++.||..|-.. |.....+.||.|+.+|.
T Consensus 3 fC~---~C~~Pi~iyg------RmIPCkHvFCydCa~~-------------------------~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCD---KCGLPIKVYG------RMIPCKHVFCYDCAIL-------------------------HEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCT---TTCSBCSEEE------EEETTCCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCS
T ss_pred ecC---ccCCCeEEEe------eeccccccHHHHHHHH-------------------------HHhccCCCCcCcCCeee
Confidence 576 6877666332 33 6999999998542 22234589999999998
Q ss_pred ecC
Q 007785 288 KNG 290 (590)
Q Consensus 288 Kn~ 290 (590)
+.+
T Consensus 49 rVe 51 (101)
T 3vk6_A 49 RIE 51 (101)
T ss_dssp EEE
T ss_pred eeE
Confidence 643
No 89
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.51 E-value=2.4 Score=33.07 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
+.|..-+.+.+.++..|+..|...+||.+.-++.|++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4588888999999999999999999999999999996
No 90
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=80.81 E-value=1.3 Score=31.92 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHcCCChHHHHHHHH
Q 007785 52 KEDLRRVMELLSLRE-HHARTLLIHYRWDVEKLLAVLV 88 (590)
Q Consensus 52 ~~~i~~v~~~l~i~~-~~a~~LL~~~~W~~e~l~~~~~ 88 (590)
.+.|..-.++.|++. ..|+..|-.++||.+.-+..|+
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 456777788999996 9999999999999988766554
No 91
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.83 E-value=0.81 Score=35.94 Aligned_cols=33 Identities=27% Similarity=0.862 Sum_probs=24.6
Q ss_pred cCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceeecCC
Q 007785 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGG 291 (590)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn~G 291 (590)
+|++.||..|... |.. .+ ..||.|+..|....|
T Consensus 43 ~C~H~fh~~Ci~~------------w~~-------------~~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 43 PCNHEFHAKCVDK------------WLK-------------AN-RTCPICRADSGPSSG 75 (75)
T ss_dssp TTTEEEETTHHHH------------HHH-------------HC-SSCTTTCCCCCCCCC
T ss_pred CCCCHhHHHHHHH------------HHH-------------cC-CcCcCcCCcCCCCCC
Confidence 6999999998653 322 12 589999999987665
No 92
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=79.83 E-value=0.33 Score=39.20 Aligned_cols=51 Identities=27% Similarity=0.728 Sum_probs=31.4
Q ss_pred ccCCCCCCCCceEeecCcccceeeccCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCccee
Q 007785 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (590)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IE 287 (590)
..|| -|-..+...+ .....|+||+.||..|...+ |. .....||.|+.++.
T Consensus 12 ~~Cp---ICle~~~~~d--~~~~p~~CGH~fC~~Cl~~~-----------~~--------------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 12 VECP---LCMEPLEIDD--INFFPCTCGYQICRFCWHRI-----------RT--------------DENGLCPACRKPYP 61 (78)
T ss_dssp CBCT---TTCCBCCTTT--TTCCSSTTSCCCCHHHHHHH-----------TT--------------SSCSBCTTTCCBCS
T ss_pred CcCC---ccCccCcccc--ccccccCCCCCcCHHHHHHH-----------Hh--------------cCCCCCCCCCCccC
Confidence 3577 4655443222 12244789999999997531 10 01268999999987
Q ss_pred e
Q 007785 288 K 288 (590)
Q Consensus 288 K 288 (590)
+
T Consensus 62 ~ 62 (78)
T 1e4u_A 62 E 62 (78)
T ss_dssp S
T ss_pred C
Confidence 4
No 93
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.81 E-value=0.53 Score=36.05 Aligned_cols=49 Identities=22% Similarity=0.626 Sum_probs=31.1
Q ss_pred cccCCCCCCCCceEeecCcccceeeccCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcce
Q 007785 207 VKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPV 286 (590)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~I 286 (590)
...|| -|...+... +.-+||+.||..|... |. ......||.|+.+|
T Consensus 15 ~~~C~---IC~~~~~~p------~~~~CgH~fC~~Ci~~------------~~-------------~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 15 KYKCE---KCHLVLCSP------KQTECGHRFCESCMAA------------LL-------------SSSSPKCTACQESI 60 (66)
T ss_dssp CEECT---TTCCEESSC------CCCSSSCCCCHHHHHH------------HH-------------TTSSCCCTTTCCCC
T ss_pred CCCCC---CCChHhcCe------eECCCCCHHHHHHHHH------------HH-------------HhCcCCCCCCCcCC
Confidence 34677 576554311 2236999999998653 22 12336899999998
Q ss_pred eec
Q 007785 287 EKN 289 (590)
Q Consensus 287 EKn 289 (590)
..+
T Consensus 61 ~~~ 63 (66)
T 2ecy_A 61 VKD 63 (66)
T ss_dssp CTT
T ss_pred Chh
Confidence 753
No 94
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=78.68 E-value=0.88 Score=41.69 Aligned_cols=45 Identities=27% Similarity=0.705 Sum_probs=30.0
Q ss_pred cCCCCCCCCceEeecCcccceeec-cCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCccee
Q 007785 209 WCPSTPHCGNAIRVEEVEVCEVEC-ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (590)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IE 287 (590)
.|| -|...+.. .+.. +||+.||..|... |. ......||.|+.++.
T Consensus 56 ~C~---IC~~~~~~------p~~~~~CgH~fC~~Ci~~------------~~-------------~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 56 MCP---ICLDMLKN------TMTTKECLHRFCADCIIT------------AL-------------RSGNKECPTCRKKLV 101 (165)
T ss_dssp BCT---TTSSBCSS------EEEETTTCCEEEHHHHHH------------HH-------------HTTCCBCTTTCCBCC
T ss_pred CCc---ccChHhhC------cCEeCCCCChhHHHHHHH------------HH-------------HhCcCCCCCCCCcCC
Confidence 687 57554431 2555 7999999998652 32 222368999998885
No 95
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=76.86 E-value=0.71 Score=38.72 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=25.1
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~ 311 (590)
-.||-|...+. +-++| .|||.||+.|...|
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~ 53 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRW 53 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHH
Confidence 57999998886 35777 69999999999885
No 96
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=76.15 E-value=1.3 Score=43.50 Aligned_cols=49 Identities=22% Similarity=0.497 Sum_probs=36.9
Q ss_pred ccccccccccccccCceec-CCCCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 116 TVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l-~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
...|.||.+.+.. -... .|+|.|...|+..|+... ....||. |+..++.
T Consensus 180 i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~------~~~~CP~--C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTC------SSCBCTT--TCCBCCS
T ss_pred CCcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhC------CCCCCCC--CCCCCCC
Confidence 5689999998763 2333 599999999999998752 2358997 8876643
No 97
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=75.75 E-value=5.5 Score=28.97 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
.+.|++++++ |.+.+.|+.-|+...||+++..+.++.
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4556677665 899999999999999999999988874
No 98
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=75.42 E-value=1.9 Score=35.01 Aligned_cols=33 Identities=36% Similarity=0.917 Sum_probs=21.8
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCc-----eeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQ-----AFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~-----~FCwlC~~~~ 311 (590)
..||.|+.+|+.++| +..| .|+. -||-.|+.+.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHH
Confidence 467888887777776 4557 4662 3677777663
No 99
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=73.71 E-value=1.5 Score=31.82 Aligned_cols=29 Identities=24% Similarity=0.570 Sum_probs=21.1
Q ss_pred cCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCccee
Q 007785 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (590)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IE 287 (590)
+|++.||..|.. +|. ..+ ..||.|+.+|.
T Consensus 26 ~CgH~fc~~Ci~------------~~~-------------~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 26 PCGHLLHRTCYE------------EML-------------KEG-YRCPLCSGPSS 54 (55)
T ss_dssp TTSCEEETTHHH------------HHH-------------HHT-CCCTTSCCSSC
T ss_pred CCCCcccHHHHH------------HHH-------------HcC-CcCCCCCCcCC
Confidence 599999999864 232 222 68999998764
No 100
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.53 E-value=1.8 Score=32.74 Aligned_cols=33 Identities=27% Similarity=0.735 Sum_probs=27.0
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccc-cccCCCc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDHT 316 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~-~~~~~H~ 316 (590)
..|+.+..+++ ++| .|+...|+.|.. ..+++|.
T Consensus 15 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~s~eH~~H~ 49 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQEDGKVICWLCERSQEHRGHH 49 (59)
T ss_dssp SBCTTTCCBCC-------EEETTTCSEECHHHHTSTTTTTCC
T ss_pred ccChhhCceee-------eecCCCCcEEecccCCCCcCCCCc
Confidence 57999999888 999 599999999986 4455553
No 101
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.07 E-value=2.1 Score=31.67 Aligned_cols=27 Identities=30% Similarity=0.784 Sum_probs=21.7
Q ss_pred cCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceee
Q 007785 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (590)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEK 288 (590)
+||+.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 69999999997641 2689999998864
No 102
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=72.79 E-value=1.9 Score=31.57 Aligned_cols=32 Identities=31% Similarity=0.690 Sum_probs=26.3
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccc-cccCCC
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~-~~~~~H 315 (590)
..|+.+..+++ ++| .|+...|+.|.. .-+++|
T Consensus 9 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 42 (53)
T 2did_A 9 SLCPQHHEALS-------LFCYEDQEAVCLICAISHTHRAH 42 (53)
T ss_dssp CBCTTTCCBCC-------EEESSSCSEECHHHHTSSTTTTS
T ss_pred CcChhhCCeee-------EEeCCCCeEEeccccCCCCCCCC
Confidence 58999998888 999 599999999976 444444
No 103
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=72.28 E-value=2 Score=29.80 Aligned_cols=32 Identities=19% Similarity=0.509 Sum_probs=25.8
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccc-cccCCC
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~-~~~~~H 315 (590)
..|+.++.+++ ++| .|+...|+.|.. .-+++|
T Consensus 4 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 37 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCKDDGTLSCVICRDSLKHASH 37 (42)
T ss_dssp CCCCSSCSSCC-------CCCCSSSSSSCCTTSSCSSCTTC
T ss_pred ccchhhCCeee-------EEeCCCCeEEeccCCCCCCCCCC
Confidence 57999998888 999 599999999986 334444
No 104
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.22 E-value=1.1 Score=33.88 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=24.6
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~ 312 (590)
-.||-|...+.. -++-.|||.||+.|+..|-
T Consensus 21 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CBCTTTCSBCSS-----CEECTTSSEECHHHHHHHH
T ss_pred CCCCcCCchhCC-----eEEeCCCCcchHHHHHHHH
Confidence 589999887763 3455899999999998863
No 105
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=71.48 E-value=1.7 Score=37.48 Aligned_cols=28 Identities=39% Similarity=0.903 Sum_probs=19.1
Q ss_pred ccCCCCCCCCceEeecCcccceeeccCCCeeecCccC
Q 007785 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (590)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~ 244 (590)
..|| -|...+.. .+..+||+.||..|..
T Consensus 19 ~~C~---IC~~~~~~------p~~~~CgH~fC~~Ci~ 46 (118)
T 3hct_A 19 YECP---ICLMALRE------AVQTPCGHRFCKACII 46 (118)
T ss_dssp GBCT---TTCSBCSS------EEECTTSCEEEHHHHH
T ss_pred CCCC---cCChhhcC------eEECCcCChhhHHHHH
Confidence 4687 57655431 1455899999999865
No 106
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=71.33 E-value=1.9 Score=33.85 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=26.2
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccccccCCC
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDH 315 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~~~~H 315 (590)
..|+.++.+++ ++| .|+...|+.|....+++|
T Consensus 19 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~H~~H 51 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQTDQTCICYLCMFQEHKNH 51 (72)
T ss_dssp CBCTTTCCBCC-------EEESSSCCEECHHHHHTTTSSS
T ss_pred CcCcccCCceE-------EEeCCCCeEEccccCCCCCCCC
Confidence 68999998888 999 599999999986434444
No 107
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=70.56 E-value=1.7 Score=33.15 Aligned_cols=29 Identities=38% Similarity=1.177 Sum_probs=21.4
Q ss_pred cCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCccee
Q 007785 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (590)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IE 287 (590)
+||+.||..|... |.. .+ ..||.|+.++.
T Consensus 23 ~C~H~fc~~Ci~~------------~~~-------------~~-~~CP~Cr~~~~ 51 (68)
T 1chc_A 23 PCLHAFCYVCITR------------WIR-------------QN-PTCPLCKVPVE 51 (68)
T ss_dssp TTTEEESTTHHHH------------HHH-------------HS-CSTTTTCCCCC
T ss_pred CCCCeeHHHHHHH------------HHh-------------Cc-CcCcCCChhhH
Confidence 6999999998652 321 11 58999998886
No 108
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=70.38 E-value=7.4 Score=27.23 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
.+.|.++++ +|.+.+.|+..|+..+||++...+-++.
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 355777777 5999999999999999999998887763
No 109
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=70.32 E-value=2.7 Score=30.59 Aligned_cols=29 Identities=24% Similarity=0.614 Sum_probs=21.6
Q ss_pred CCcCCCCCCc-ceeecCCCCeeEe-ccCcee
Q 007785 275 HTKPCPKCHK-PVEKNGGCNLVSC-ICGQAF 303 (590)
Q Consensus 275 ~tK~CPkC~~-~IEKn~GCNHMtC-~Cg~~F 303 (590)
+...||.|+. .|.-+..=..+.| .||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3468999988 8877666667888 487755
No 110
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=69.81 E-value=2 Score=32.33 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=19.8
Q ss_pred CCcCCCCCCcceeecCCCCeeEe-ccCcee
Q 007785 275 HTKPCPKCHKPVEKNGGCNLVSC-ICGQAF 303 (590)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCNHMtC-~Cg~~F 303 (590)
..+.||+|+..+--...-+.++| +|++.+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 35899999974432223368999 699875
No 111
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=69.77 E-value=2 Score=38.90 Aligned_cols=46 Identities=22% Similarity=0.547 Sum_probs=29.7
Q ss_pred ccCCCCCCCCceEeecCcccceeeccCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCccee
Q 007785 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (590)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IE 287 (590)
..|| -|...+.. .+.-+||+.||..|... | +......||.|+.++.
T Consensus 79 ~~C~---IC~~~~~~------pv~~~CgH~fC~~Ci~~------------~-------------~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCV---CCQELVYQ------PVTTECFHNVCKDCLQR------------S-------------FKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCT---TTSSBCSS------EEECTTSCEEEHHHHHH------------H-------------HHTTCCBCTTTCCBCC
T ss_pred CEee---cCChhhcC------CEEcCCCCchhHHHHHH------------H-------------HHhCCCcCCCCCccCC
Confidence 3687 57654431 13447999999998653 2 2222357999998886
No 112
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.56 E-value=1.4 Score=34.12 Aligned_cols=32 Identities=31% Similarity=0.719 Sum_probs=24.9
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccccC
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~~ 313 (590)
..||-|...+. +-++-.|||.||+.|+..|-.
T Consensus 21 ~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEECTTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEcCCCChhhHHHHHHHHH
Confidence 58999998776 234558999999999988643
No 113
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=69.51 E-value=1.9 Score=38.21 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=24.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~ 312 (590)
-.||-|...+. +-++-.|||.||..|...|-
T Consensus 54 ~~C~iC~~~~~-----~~~~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTLNCAHSFCSYCINEWM 84 (138)
T ss_dssp SBCTTTCSBCS-----SEEEETTSCEEEHHHHHHHT
T ss_pred CCCcccCcccC-----CceECCCCCCccHHHHHHHH
Confidence 46999988775 23555799999999998864
No 114
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.14 E-value=2.2 Score=36.65 Aligned_cols=29 Identities=34% Similarity=0.799 Sum_probs=19.5
Q ss_pred cCCCCCCCCceEeecCcccceeec-cCCCeeecCccCcC
Q 007785 209 WCPSTPHCGNAIRVEEVEVCEVEC-ACGAQFCFSCLSEA 246 (590)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~ 246 (590)
.|| -|...+.. + +.- +||+.||..|...|
T Consensus 24 ~C~---IC~~~~~~-----p-v~~~~CgH~fC~~Ci~~~ 53 (117)
T 1jm7_B 24 RCS---RCTNILRE-----P-VCLGGCEHIFCSNCVSDC 53 (117)
T ss_dssp SCS---SSCSCCSS-----C-BCCCSSSCCBCTTTGGGG
T ss_pred CCC---CCChHhhC-----c-cEeCCCCCHHHHHHHHHH
Confidence 687 57655431 1 333 79999999998754
No 115
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=68.56 E-value=1.9 Score=39.47 Aligned_cols=31 Identities=35% Similarity=0.822 Sum_probs=21.7
Q ss_pred cccCCCCCCCCceEeecCcccceeeccCCCeeecCccCcC
Q 007785 207 VKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEA 246 (590)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~ 246 (590)
...|| -|...+.. .+.++||+.||..|...|
T Consensus 18 ~~~C~---IC~~~~~~------pv~~~CgH~fC~~Ci~~~ 48 (170)
T 3hcs_A 18 KYECP---ICLMALRE------AVQTPCGHRFCKACIIKS 48 (170)
T ss_dssp GGBCT---TTCSBCSS------EEECTTSCEEEHHHHHHH
T ss_pred CCCCC---CCChhhcC------cEECCCCCHHHHHHHHHH
Confidence 34687 57665441 256789999999998654
No 116
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=68.20 E-value=3.1 Score=32.67 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=25.0
Q ss_pred CcCCCCCCcceeecCCCCeeEe-ccCceeecccc
Q 007785 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCG 308 (590)
Q Consensus 276 tK~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~ 308 (590)
.-.||.|+.+++-+.+...+.| .||..|=-.=|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dG 41 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDG 41 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEEEEETT
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCCCC
Confidence 3589999999998888888888 47766644333
No 117
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=68.01 E-value=1.5 Score=34.63 Aligned_cols=26 Identities=27% Similarity=0.740 Sum_probs=21.9
Q ss_pred cCCCe-eecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceee
Q 007785 233 ACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (590)
Q Consensus 233 ~Cg~~-fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEK 288 (590)
+||+. ||..|...| +.||.|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 79999 999996643 589999999874
No 118
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=67.94 E-value=2.6 Score=32.67 Aligned_cols=27 Identities=37% Similarity=0.874 Sum_probs=22.6
Q ss_pred CcCCCCCCcceeecCCCCeeEeccCceeecc
Q 007785 276 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (590)
Q Consensus 276 tK~CPkC~~~IEKn~GCNHMtC~Cg~~FCwl 306 (590)
..+|..|++.+... | +.|+|+..||-.
T Consensus 15 ~~rC~~C~kkvgl~-~---f~CrCg~~FC~~ 41 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT-G---FMCRCGTTFCGS 41 (64)
T ss_dssp CCCCTTTCCCCCTT-C---EECSSSCEECTT
T ss_pred CCcChhhCCccCcc-C---EEeecCCEeccc
Confidence 47899999988755 3 889999999975
No 119
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=67.52 E-value=2.4 Score=30.64 Aligned_cols=32 Identities=28% Similarity=0.612 Sum_probs=26.0
Q ss_pred cCCCCC-CcceeecCCCCeeEe-ccCceeeccccccccCCC
Q 007785 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDH 315 (590)
Q Consensus 277 K~CPkC-~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~~~~H 315 (590)
..|+.+ +.++. ++| .|+...|+.|...-+++|
T Consensus 7 ~~C~~H~~e~l~-------lfC~~~~~~iC~~C~~~~H~~H 40 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCESCDTLTCRDCQLNAHKDH 40 (50)
T ss_dssp CBCSSSTTCBCC-------EEETTTTEEECHHHHHTTTTTC
T ss_pred CcCcCCCCCCEE-------EEeCCCCEEEecccCCCcCCCC
Confidence 579999 88888 999 599999999976544444
No 120
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=67.17 E-value=7.2 Score=30.98 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
+.|.++++ +|.+.+.|+..|+...||+++.++.++.
T Consensus 31 e~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34566666 4899999999999999999999999884
No 121
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=65.99 E-value=1.2 Score=36.43 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=23.5
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~-Cg~~FCwlC~~~~ 311 (590)
-.||-|...+. +-++-. |||.||..|+..|
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~ 44 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTA 44 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHH
Confidence 47999987765 235666 9999999999875
No 122
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=65.81 E-value=2 Score=37.30 Aligned_cols=30 Identities=20% Similarity=0.473 Sum_probs=22.6
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
-.||-|...+. +-++-.|||.||..|...|
T Consensus 53 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~ 82 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTVCQHNVCKDCLDRS 82 (124)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEeeCCCcccHHHHHHH
Confidence 47999988776 2344478888888888775
No 123
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.79 E-value=1.5 Score=35.21 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=24.0
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
-.||-|...+..... .-+.-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~ 49 (88)
T 2ct2_A 16 LECPICMESFTEEQL-RPKLLHCGHTICRQCLEKL 49 (88)
T ss_dssp CBCTTTCCBCCTTSS-CEEECSSSCEEEHHHHHHH
T ss_pred CCCccCCccccccCC-CeEECCCCChhhHHHHHHH
Confidence 579999887764321 1233479999999998875
No 124
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=65.76 E-value=2.6 Score=34.41 Aligned_cols=36 Identities=25% Similarity=0.665 Sum_probs=29.5
Q ss_pred CCcCCCCCCcceeecCCCCeeEe-ccCceeeccccccccC
Q 007785 275 HTKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGR 313 (590)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~~~ 313 (590)
..-.||.|+....+..+-..+.| .|++.|- ++.|.+
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFT---GGSYKP 62 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEE---CCSSSS
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEec---CCEecc
Confidence 34699999999999888889999 4999885 566554
No 125
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=65.71 E-value=2.9 Score=32.43 Aligned_cols=33 Identities=30% Similarity=0.730 Sum_probs=25.8
Q ss_pred ccccccccccccccccCceecCC-CCccchhhHHHHH
Q 007785 114 SSTVMCDICMEEVAGDKATKMDC-GHCFCNDCWTEHF 149 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~C-gH~FC~~C~~~yi 149 (590)
.+..-|.||.++-. +.-+.| |-.||..||++.=
T Consensus 6 ee~pWC~ICneDAt---lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDAT---LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCC---EEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCe---EEecCCCCceehHHHHHHHc
Confidence 34568999999832 445689 8899999999875
No 126
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.49 E-value=2.5 Score=31.09 Aligned_cols=28 Identities=32% Similarity=0.687 Sum_probs=19.0
Q ss_pred CCcCCCCCCccee-ecCCCCeeEe-ccCcee
Q 007785 275 HTKPCPKCHKPVE-KNGGCNLVSC-ICGQAF 303 (590)
Q Consensus 275 ~tK~CPkC~~~IE-Kn~GCNHMtC-~Cg~~F 303 (590)
..+.||+|+..+. .+.+ +.+.| +||+.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~-~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHG-DRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECS-SEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCC-CeEECCCCCCEE
Confidence 4589999987443 3333 67888 688754
No 127
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=65.44 E-value=26 Score=26.51 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 50 AQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 50 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
.|++.|..++...|++...+...|...+||.++.+..|.+
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5778899999999999999999999999999999888874
No 128
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=65.12 E-value=2.5 Score=30.26 Aligned_cols=32 Identities=16% Similarity=0.501 Sum_probs=25.4
Q ss_pred cCCCCCC-cceeecCCCCeeEe-ccCceeecccc-ccccCCC
Q 007785 277 KPCPKCH-KPVEKNGGCNLVSC-ICGQAFCWLCG-GATGRDH 315 (590)
Q Consensus 277 K~CPkC~-~~IEKn~GCNHMtC-~Cg~~FCwlC~-~~~~~~H 315 (590)
..|+.+. .+++ ++| .|+...||.|. ..-+++|
T Consensus 7 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 41 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKVFGIHKAC 41 (48)
T ss_dssp CBCSSSTTSBCC-------EEETTTTEEECHHHHHHSTTTTS
T ss_pred CcCCCCCCcccc-------EEcCCCCeeEcccccCCCcCCCC
Confidence 5799998 8888 999 59999999996 3334444
No 129
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=64.26 E-value=2.2 Score=33.41 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=23.8
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~-Cg~~FCwlC~~~~ 311 (590)
-.||-|...+. +-++-. |||.||+.|...|
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~ 46 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTA 46 (74)
T ss_dssp GSCSSSCCCCT-----TCEECSSSCCEECTTHHHHH
T ss_pred CCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHH
Confidence 58999988776 235566 9999999999885
No 130
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=63.89 E-value=3.6 Score=31.86 Aligned_cols=27 Identities=37% Similarity=0.860 Sum_probs=22.1
Q ss_pred CcCCCCCCcceeecCCCCeeEeccCceeecc
Q 007785 276 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (590)
Q Consensus 276 tK~CPkC~~~IEKn~GCNHMtC~Cg~~FCwl 306 (590)
..+|..|++.+... | +.|+||..||-.
T Consensus 15 ~~rC~~C~kkvgl~-~---f~CrCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM-G---FKCKCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTS-C---EECTTSCEECSS
T ss_pred CCcChhhCCccccc-C---eEeecCCEeccc
Confidence 46899999987754 2 889999999975
No 131
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=63.48 E-value=2.4 Score=33.25 Aligned_cols=32 Identities=25% Similarity=0.676 Sum_probs=24.0
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccccC
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~~ 313 (590)
-.||-|...+.. -++-.|||.||..|...|-.
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~ 44 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNK 44 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHH
Confidence 479999877653 24447999999999988643
No 132
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=63.32 E-value=1.8 Score=33.21 Aligned_cols=36 Identities=31% Similarity=0.604 Sum_probs=25.2
Q ss_pred cCCCCCCcceeec--CCCCeeEeccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKN--GGCNLVSCICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn--~GCNHMtC~Cg~~FCwlC~~~~~ 312 (590)
..||-|...+... +|-.-+.-.|||.||+.|...|-
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 48 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 48 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH
Confidence 6799999887653 23222333699999999998863
No 133
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=63.27 E-value=2.7 Score=33.00 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=23.5
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~ 312 (590)
-.||-|...+.. -++-.|||.||..|...|-
T Consensus 9 ~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~ 39 (78)
T 1t1h_A 9 FRCPISLELMKD-----PVIVSTGQTYERSSIQKWL 39 (78)
T ss_dssp SSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHH
T ss_pred CCCCCccccccC-----CEEcCCCCeecHHHHHHHH
Confidence 479999887752 3555799999999988753
No 134
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=63.20 E-value=3.8 Score=32.94 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=26.8
Q ss_pred cCCCCC-CcceeecCCCCeeEe-ccCceeeccccc-cccCCCc
Q 007785 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDHT 316 (590)
Q Consensus 277 K~CPkC-~~~IEKn~GCNHMtC-~Cg~~FCwlC~~-~~~~~H~ 316 (590)
..||.+ +.+++ ++| .|+...|+.|.. ..+.+|.
T Consensus 19 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~ 54 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCVSDDQLICALCKLVGRHRDHQ 54 (84)
T ss_dssp CCCSSCSSSCCC-------EEETTTTEEECHHHHHTSTTTTCC
T ss_pred CcCcCcCCcccc-------EEcCCCCceEcccCcCCCCCCCCC
Confidence 579999 58888 999 599999999986 5555554
No 135
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=63.01 E-value=14 Score=30.09 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
.|.+++++ |++...|+..|+...||+++.++.++.
T Consensus 32 ~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 32 SINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35555554 999999999999999999999999885
No 136
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=63.00 E-value=2.3 Score=35.89 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=24.5
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~~ 312 (590)
-.||-|...+.. -++. .|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 47 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYL 47 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHH
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHHHHH
Confidence 589999888752 4666 799999999988753
No 137
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.67 E-value=2.1 Score=33.11 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=23.8
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~ 312 (590)
..||-|...+.. -++-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCT
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHH
Confidence 579999877642 2455799999999998864
No 138
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=62.43 E-value=1.8 Score=33.66 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=16.4
Q ss_pred cccccccccCCcccccCCchhhhcc
Q 007785 565 QKRVRKEDCLSGRFDLNLPAEVIDR 589 (590)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (590)
.-|++|-|.|...|.+|+||||++.
T Consensus 12 kp~~~kgg~g~etyYInIPaeI~ka 36 (68)
T 3o27_A 12 NPRAYKGGSGHTTFYLLIPKDIAEA 36 (68)
T ss_dssp CCEEC-----CCCEEEEECHHHHHH
T ss_pred eeeeeeCCCCceEEEEeCcHHHHHH
Confidence 3477888887899999999999863
No 139
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=61.72 E-value=4 Score=32.51 Aligned_cols=26 Identities=42% Similarity=0.952 Sum_probs=22.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwl 306 (590)
.+|..|++.+...+ +.|+|+..||-.
T Consensus 26 nRC~~CrKkvgL~g----f~CrCg~~FCs~ 51 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCRCGNLFCGL 51 (74)
T ss_dssp TBCSSSCCBCGGGC----EECTTSCEECSS
T ss_pred CcChhhCCcccccC----eecCCCCEechh
Confidence 58999999888664 899999999975
No 140
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=61.43 E-value=2.9 Score=30.32 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.2
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeeccccccccC
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGR 313 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~-Cg~~FCwlC~~~~~~ 313 (590)
..||-|...+..... .+.-. |||.||..|+..|-.
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~~ 41 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWLG 41 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTTT
T ss_pred CcCccCCccccCCCc--eEECCCCCCcccHHHHHHHHH
Confidence 579999888765432 34554 999999999998743
No 141
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=61.41 E-value=5.1 Score=33.53 Aligned_cols=33 Identities=30% Similarity=0.874 Sum_probs=27.7
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCc-----eeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQ-----AFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~-----~FCwlC~~~~ 311 (590)
..||.|+.+++.++| +.+| .|+. -+|--|..+.
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHH
Confidence 699999999999988 7779 5885 4699998874
No 142
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.30 E-value=2.3 Score=33.05 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=20.8
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~ 311 (590)
..||-|...+.. -++- .|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~ 46 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRH 46 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHH
Confidence 589999887763 2444 57777777777664
No 143
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=61.29 E-value=2.8 Score=35.56 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=24.3
Q ss_pred cCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceeecCC
Q 007785 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGG 291 (590)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn~G 291 (590)
+|++.||..|... |...... .....||-|+..+.+..|
T Consensus 60 ~C~H~Fh~~Ci~~------------wl~~~~~---------~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 60 KCSHAFHLLCLLA------------MYCNGNK---------DGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SSCCEECHHHHHH------------HHHHTCC---------SSCCBCTTTCCBSSSCSS
T ss_pred CCCCcccHHHHHH------------HHHcccC---------CCCCcCCCCCCccCCCCC
Confidence 5999999999753 3311100 123689999998875433
No 144
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=60.42 E-value=14 Score=28.39 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 007785 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (590)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~~ 90 (590)
+.|+++++ +|.+...|+.-|+...||++...+.++..
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 34556665 59999999999999999999999888853
No 145
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.01 E-value=16 Score=27.86 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
+.|.++++ +|.+...|+..|+...||++..++-++.
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 11 DCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34666666 5999999999999999999999998885
No 146
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=59.50 E-value=4.9 Score=34.15 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=23.5
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~ 312 (590)
-.||-|...+.. -++=.|||.||..|...|-
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCC
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHH
Confidence 479999877652 2333799999999998853
No 147
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.48 E-value=4.1 Score=32.43 Aligned_cols=28 Identities=36% Similarity=0.874 Sum_probs=22.9
Q ss_pred CCcCCCCCCcceeecCCCCeeEeccCceeecc
Q 007785 275 HTKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (590)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCNHMtC~Cg~~FCwl 306 (590)
...+|..|++.+... | +.|+|+..||-.
T Consensus 24 ~~~RC~~C~kkvgL~-~---f~CrCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT-G---FKCRCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTT-C---EECTTSCEECTT
T ss_pred cCccchhhcCccccc-c---eEeccCCEeccc
Confidence 347899999888765 3 899999999974
No 148
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=59.28 E-value=2.5 Score=31.51 Aligned_cols=35 Identities=31% Similarity=0.663 Sum_probs=23.7
Q ss_pred cCCCCCCcceeec--CCCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKN--GGCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn--~GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
..||-|...+... .+-.-+.-.|||.||..|...|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 40 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 40 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHH
Confidence 4788888877643 2222233369999999998875
No 149
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.63 E-value=2.7 Score=33.19 Aligned_cols=30 Identities=30% Similarity=0.702 Sum_probs=23.1
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
-.||-|...+.. -+.-.|||.||..|+..|
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSADCNHSFCRACITLN 49 (85)
T ss_dssp TSCTTTCSCCSS-----CEECTTSCCBCHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeCCCCCHHHHHHHHHH
Confidence 589999887753 245579999999998875
No 150
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=58.59 E-value=3.1 Score=31.81 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=23.8
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~ 312 (590)
..||-|...+.... ..+.-.|||.||+.|+..|-
T Consensus 15 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 15 EKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWL 48 (69)
T ss_dssp CSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHH
T ss_pred CCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHH
Confidence 68999988775322 22333699999999988853
No 151
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=58.53 E-value=2.8 Score=34.71 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=24.5
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~~ 312 (590)
-.||-|...+.. -++. .|||.||..|...|-
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHH
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHH
Confidence 589999987763 4566 699999999998863
No 152
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=58.00 E-value=4.7 Score=33.01 Aligned_cols=28 Identities=32% Similarity=0.674 Sum_probs=22.3
Q ss_pred CcCCCCCCcceeecCCCCeeEeccCceeecc
Q 007785 276 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (590)
Q Consensus 276 tK~CPkC~~~IEKn~GCNHMtC~Cg~~FCwl 306 (590)
..+|..|++.+-...| +.|+||..||-.
T Consensus 25 ~~rC~~C~kkvgl~~~---f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATS---FECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSC---EECTTCCEECTT
T ss_pred CccchhhCCeecccCC---eEcCCCCEeccc
Confidence 4689999987765433 899999999975
No 153
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=57.72 E-value=4.3 Score=30.75 Aligned_cols=33 Identities=15% Similarity=0.504 Sum_probs=26.6
Q ss_pred cCCCCC-CcceeecCCCCeeEe-ccCceeeccccc-cccCCCc
Q 007785 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDHT 316 (590)
Q Consensus 277 K~CPkC-~~~IEKn~GCNHMtC-~Cg~~FCwlC~~-~~~~~H~ 316 (590)
..||.+ ..+++ ++| .|+...|+.|.. .-+++|.
T Consensus 9 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~ 44 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKVFGIHKACE 44 (64)
T ss_dssp CCCSSCTTCCCC-------SEESSSCCCCCSHHHHSSSTTSSC
T ss_pred CcCcCcCCCccc-------eEcCcCCceeCccccCCCcCCCCC
Confidence 579999 88888 999 599999999975 3455554
No 154
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.66 E-value=3.1 Score=31.90 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=23.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~ 312 (590)
..||-|...+.. +.=.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~ 45 (70)
T 2ecn_A 16 EECCICMDGRAD------LILPCAHSFCQKCIDKWS 45 (70)
T ss_dssp CCCSSSCCSCCS------EEETTTEEECHHHHHHSS
T ss_pred CCCeeCCcCccC------cccCCCCcccHHHHHHHH
Confidence 589999887653 444799999999998864
No 155
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.60 E-value=3.2 Score=32.95 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=22.3
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
-.||-|...+.. .++-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 45 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVVTKCRHYFCESCALEH 45 (81)
T ss_dssp SBCSSSCSBCCS-----EEECTTSCEEEHHHHHHH
T ss_pred CCCcCCCchhcC-----eeEccCCCHhHHHHHHHH
Confidence 579999887753 244468888888888775
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=57.55 E-value=7.3 Score=38.05 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=11.7
Q ss_pred eeccCCCeeecCccC
Q 007785 230 VECACGAQFCFSCLS 244 (590)
Q Consensus 230 v~C~Cg~~fC~~C~~ 244 (590)
|+-+||+.||..|-.
T Consensus 222 v~~~~gh~f~~~~i~ 236 (281)
T 2c2l_A 222 CITPSGITYDRKDIE 236 (281)
T ss_dssp EECSSCCEEETTHHH
T ss_pred eECCCCCEECHHHHH
Confidence 444699999999854
No 157
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=57.17 E-value=3.2 Score=37.11 Aligned_cols=30 Identities=20% Similarity=0.687 Sum_probs=24.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
-.||-|...+.. -++..||+.||..|...|
T Consensus 32 ~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~ 61 (141)
T 3knv_A 32 YLCSACRNVLRR-----PFQAQCGHRYCSFCLASI 61 (141)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHH
T ss_pred cCCCCCChhhcC-----cEECCCCCccCHHHHHHH
Confidence 479999987752 366689999999999885
No 158
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=56.98 E-value=22 Score=26.15 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 52 KEDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 52 ~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
.+.|.+++++ |. +.+.++..|+...||+++.++.++.
T Consensus 12 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 12 QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4556667665 78 8899999999999999999998885
No 159
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.44 E-value=2.9 Score=31.65 Aligned_cols=35 Identities=31% Similarity=0.628 Sum_probs=24.4
Q ss_pred cCCCCCCcceeecC--CCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNG--GCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~--GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
..||-|...+.... +-.-+.-.|||.||..|...|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 52 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 52 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHH
Confidence 67999988876432 222233369999999999885
No 160
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=56.30 E-value=5.3 Score=31.24 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=21.9
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~ 312 (590)
..||-|...+.... ..+.-.|+|.||+.|+..|-
T Consensus 16 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 16 LECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp CCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHH
T ss_pred CCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHH
Confidence 68999987765322 11222578888888887753
No 161
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=55.27 E-value=30 Score=25.97 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 49 AAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 49 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
..|++.|..++...+++...+...|...+||.++.+..|.+
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35778899999999999999999999999999999998875
No 162
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=55.27 E-value=25 Score=27.75 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 55 LRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 55 i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
|+++++ +|++...|+.-|+..+||++..++-++.
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 444554 5999999999999999999999998885
No 163
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.15 E-value=2 Score=31.44 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=23.7
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
-.||-|...+... +.-.|||.||+.|+..|
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-----VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-----EeCCCCCccCHHHHHHH
Confidence 5799998877632 33479999999999986
No 164
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.83 E-value=2.8 Score=31.40 Aligned_cols=32 Identities=25% Similarity=0.700 Sum_probs=26.0
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccc-cccCCC
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~-~~~~~H 315 (590)
..|+.++.+++ ++| .|+...|+.|.. .-+++|
T Consensus 19 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~~~eH~~H 52 (57)
T 2egm_A 19 GICPKHQEALK-------LFCEVDEEAICVVCRESRSHKQH 52 (57)
T ss_dssp SBCTTTCCBCC-------EEETTTTEEECHHHHHSHHHHSS
T ss_pred CcChhhCceee-------EEcCCCCcEEecccCCCCCCCCC
Confidence 57999998888 999 599999999986 334444
No 165
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=54.30 E-value=3.8 Score=34.94 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=23.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
-.||-|...+.. -++-.|||.||+.|...|
T Consensus 24 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 53 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVETSCKHLFCRICILRC 53 (116)
T ss_dssp TBCTTTCSBCSS-----EEECTTSCEEEHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEEcCCCCcccHHHHHHH
Confidence 579999988762 345579999999998875
No 166
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=54.21 E-value=3.7 Score=32.83 Aligned_cols=26 Identities=38% Similarity=0.982 Sum_probs=21.5
Q ss_pred cCCCe-eecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceee
Q 007785 233 ACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (590)
Q Consensus 233 ~Cg~~-fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEK 288 (590)
+||+. ||..|...+ +.||-|+.+|.+
T Consensus 35 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 35 PCGHTVCCESCAAQL------------------------------QSCPVCRSRVEH 61 (79)
T ss_dssp TTCBCCBCHHHHTTC------------------------------SBCTTTCCBCCE
T ss_pred CCCCHHHHHHHHHhc------------------------------CcCCCCCchhhC
Confidence 79999 999987532 489999999984
No 167
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.49 E-value=3.4 Score=32.03 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=23.5
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~ 312 (590)
..||-|...+..... .+...|+|.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~~C~H~f~~~Ci~~~~ 49 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGICPCKHAFHRKCLIKWL 49 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEETTTEEEEHHHHHHHH
T ss_pred CCCcCCCcccCCCCc--EEEcCCCCEecHHHHHHHH
Confidence 579999888764332 2333688888888888753
No 168
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.67 E-value=3.5 Score=32.56 Aligned_cols=30 Identities=33% Similarity=0.749 Sum_probs=22.2
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
-.||-|...+.. -++-.|||.||..|+..|
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSLDCGHSFCQACLTAN 49 (85)
T ss_dssp CCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHH
T ss_pred CCCCCCCcccCC-----ceeCCCCCHHHHHHHHHH
Confidence 589999987753 233368888888888774
No 169
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=51.59 E-value=23 Score=26.80 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=33.9
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 52 KEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 52 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
+++|..+++++ ++.....+..|..++++++..++.+.+
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45677788889 899999999999999999999999885
No 170
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=51.19 E-value=9.4 Score=40.05 Aligned_cols=33 Identities=30% Similarity=0.826 Sum_probs=23.7
Q ss_pred eccCCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceee
Q 007785 231 ECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (590)
Q Consensus 231 ~C~Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEK 288 (590)
.-+||+.||..|... |.. .....||.|+.+|..
T Consensus 347 ~lpCGH~FC~~Ci~~------------wl~-------------~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 347 IEPCGHLMCTSCLTS------------WQE-------------SEGQGCPFCRCEIKG 379 (389)
T ss_dssp EETTCCEECHHHHHH------------HHH-------------HTCSBCTTTCCBCCE
T ss_pred EeCCCChhhHHHHHH------------HHh-------------cCCCCCCCCCCccCC
Confidence 347999999998642 322 133789999999874
No 171
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=50.37 E-value=18 Score=36.02 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 007785 47 LLAAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (590)
Q Consensus 47 i~~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~~ 90 (590)
+...+++.|++-+.+.|.++..|+..|..++||.+..++.|++.
T Consensus 11 l~~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~ 54 (270)
T 3bq3_A 11 DASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDK 54 (270)
T ss_dssp --CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34456778999999999999999999999999999999999963
No 172
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.65 E-value=3.6 Score=34.59 Aligned_cols=30 Identities=30% Similarity=0.667 Sum_probs=22.3
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~ 311 (590)
-.||-|...+.. -++-.|||.||+.|...|
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 51 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKL 51 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHH
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHH
Confidence 589999887752 233368999999998875
No 173
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=49.10 E-value=1.7e+02 Score=28.21 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007785 434 HLFEDQQQQLEANVEKLSKFLEEPFDQY---PDDKVMEIRMQVINLSVITDTLCKKMYECIENDLLGC 498 (590)
Q Consensus 434 ~lfe~~Q~~lE~~~E~Ls~~le~~~~~~---~~~~i~~~k~~~~~l~~~~~~~~~~l~~~~e~~l~~~ 498 (590)
-+.+..+..++.+++.|...++-....+ ...-+..+|.++.-++.-+...+..+++.|...|.+.
T Consensus 165 P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~ 232 (243)
T 2a01_A 165 PYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSA 232 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3567777778888888888776433322 2233556666666555555555556666666555543
No 174
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=48.85 E-value=28 Score=25.43 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 53 EDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 53 ~~i~~v~~~l~i-~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
+.|.+++++ |. +...++..|+...||+++.++.++.
T Consensus 14 ~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 14 QQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456666664 88 8889999999999999999988773
No 175
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=48.73 E-value=11 Score=29.46 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=20.9
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeecc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWL 306 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwl 306 (590)
-.||.|+.+++-+.+=..+.| .||..|=-.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIK 39 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 589999999987655455777 376555333
No 176
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=48.36 E-value=12 Score=29.50 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=22.3
Q ss_pred CcCCCCCCcceeecCCCCeeEe-ccCceeecc
Q 007785 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWL 306 (590)
Q Consensus 276 tK~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwl 306 (590)
.-.||.|+.+++-+.+=..+.| .||..|=-.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 3589999999987655556888 477666433
No 177
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.76 E-value=36 Score=27.58 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 007785 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (590)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~~ 90 (590)
+.|.++++ +|.+...|+..|+..+||++.-++-+++.
T Consensus 31 ~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 31 AALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 34566666 59999999999999999999999988863
No 178
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=46.71 E-value=6.6 Score=34.93 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=20.2
Q ss_pred cccccCCCCCCCCceEeecCc---ccceeecc-CCCe
Q 007785 205 KMVKWCPSTPHCGNAIRVEEV---EVCEVECA-CGAQ 237 (590)
Q Consensus 205 ~~~~~CP~~p~C~~~i~~~~~---~~~~v~C~-Cg~~ 237 (590)
..+++|| .|++.+....+ ......|. |++.
T Consensus 22 ~~~~FCP---eCgNmL~pked~~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 22 TTFRFCR---DCNNMLYPREDKENNRLLFECRTCSYV 55 (133)
T ss_dssp CCCCBCT---TTCCBCBCCBCTTTCCBCCBCSSSCCB
T ss_pred cCCeeCC---CCCCEeeECccCCCceeEEECCCCCCc
Confidence 4678998 79999887653 23345664 6664
No 179
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.67 E-value=31 Score=25.50 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCHHH-HHHHHHHcCCChHHHHHHHHh
Q 007785 53 EDLRRVMELLSLREHH-ARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 53 ~~i~~v~~~l~i~~~~-a~~LL~~~~W~~e~l~~~~~~ 89 (590)
+.|.++.++ |++..+ ++..|+..+||+++.++.++.
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 346666665 886554 699999999999999999885
No 180
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.24 E-value=13 Score=29.08 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=20.9
Q ss_pred CcCCCCCCcceeecCCCCeeEec-cCceeec
Q 007785 276 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCW 305 (590)
Q Consensus 276 tK~CPkC~~~IEKn~GCNHMtC~-Cg~~FCw 305 (590)
.-.||.|+.+++-..+=..+.|. ||..|=-
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAYPI 38 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 35899999999865544567773 7665533
No 181
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=46.06 E-value=3.7 Score=33.52 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=24.5
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccccC
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg~~FCwlC~~~~~~ 313 (590)
..||-|...+.... ..+.-.|||.||+.|...|-.
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHT
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHH
Confidence 46999987665432 223336999999999998643
No 182
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.86 E-value=38 Score=27.52 Aligned_cols=38 Identities=11% Similarity=0.297 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 007785 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (590)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~~ 90 (590)
.+.|.++++ +|++...|+..|+..+|+++..++-+++.
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 556777777 59999999999999999999999999863
No 183
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.79 E-value=3.7 Score=32.10 Aligned_cols=28 Identities=36% Similarity=0.770 Sum_probs=21.6
Q ss_pred CcCCCCCCcceeecC--CCCeeEeccCceeecc
Q 007785 276 TKPCPKCHKPVEKNG--GCNLVSCICGQAFCWL 306 (590)
Q Consensus 276 tK~CPkC~~~IEKn~--GCNHMtC~Cg~~FCwl 306 (590)
..+|-.|++.+...+ | +.|+||..||-.
T Consensus 15 ~~rC~~C~kk~gL~~~eg---f~CrCg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQEL---GSCRCGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCCHHHHHH---HCCSSSCCCCTT
T ss_pred CCcchhhCCeecccccCc---eEecCCCEehhc
Confidence 468999998887432 3 579999999975
No 184
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.54 E-value=8.7 Score=30.57 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=17.3
Q ss_pred CCCCeeEeccCceeeccccccccC
Q 007785 290 GGCNLVSCICGQAFCWLCGGATGR 313 (590)
Q Consensus 290 ~GCNHMtC~Cg~~FCwlC~~~~~~ 313 (590)
+.+..+.-.|+|.|+..|+..|-.
T Consensus 39 ~~~~~~~~~C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 39 EDCVVVWGECNHSFHNCCMSLWVK 62 (81)
T ss_dssp TTCCEEEETTSCEEEHHHHHHHTT
T ss_pred CceEEEeCCCCCccChHHHHHHHH
Confidence 444445557999999999998754
No 185
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=42.88 E-value=20 Score=29.02 Aligned_cols=26 Identities=35% Similarity=0.867 Sum_probs=20.7
Q ss_pred CCCCCCcceeecCCCCeeEec-cC--ceeeccccccc
Q 007785 278 PCPKCHKPVEKNGGCNLVSCI-CG--QAFCWLCGGAT 311 (590)
Q Consensus 278 ~CPkC~~~IEKn~GCNHMtC~-Cg--~~FCwlC~~~~ 311 (590)
.||.|+.++|+ |+ || ..||-.|++-.
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCCC
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCEe
Confidence 89999999995 63 76 67888887753
No 186
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=42.49 E-value=11 Score=38.92 Aligned_cols=27 Identities=26% Similarity=0.796 Sum_probs=22.4
Q ss_pred ccCCCe-eecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceee
Q 007785 232 CACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (590)
Q Consensus 232 C~Cg~~-fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEK 288 (590)
=+||+. ||..|...+ +.||-|+.+|.+
T Consensus 311 lpCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 311 IPCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp ETTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred cCCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 379999 999997632 589999999975
No 187
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.13 E-value=43 Score=25.58 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-ChHHHHHHHHh
Q 007785 54 DLRRVMELLSLREHHARTLLIHYRW-DVEKLLAVLVE 89 (590)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W-~~e~l~~~~~~ 89 (590)
.|.++++ +|++...|+..|+...| |++..++-+++
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4666666 59999999999999999 99999988885
No 188
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=40.80 E-value=18 Score=28.24 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=22.8
Q ss_pred CcCCCCCCcceeecCCCCeeEec-cCceeecccc
Q 007785 276 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCG 308 (590)
Q Consensus 276 tK~CPkC~~~IEKn~GCNHMtC~-Cg~~FCwlC~ 308 (590)
.-.||.|+.+++-...=+.+.|. |+..|=-.=|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~dG 43 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAYRIDDG 43 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEEEEETT
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccccCCCC
Confidence 35899999999876544568884 7766644333
No 189
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=40.15 E-value=15 Score=30.27 Aligned_cols=53 Identities=26% Similarity=0.625 Sum_probs=36.9
Q ss_pred CCCceEeecCcccceeecc-CCCeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceeecCCC
Q 007785 215 HCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGC 292 (590)
Q Consensus 215 ~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn~GC 292 (590)
-|+--|-...+....|-|. |++..|..|.. +. ++...+.||+|+.+..+..|+
T Consensus 21 iCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE----------YE---------------rkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 21 ICGDQIGLTVEGDLFVACNECGFPACRPCYE----------YE---------------RREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH----------HH---------------HHTSCSSCTTTCCCCCCCTTC
T ss_pred cccCccccCCCCCEEEeeeccCChhhHHHHH----------HH---------------HhccCccccccCCccccccCC
Confidence 5776666666665678895 99998887643 21 223458999999998865554
No 190
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.63 E-value=54 Score=25.84 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-CChHHHHHHHHhc
Q 007785 53 EDLRRVMELLSLREHHARTLLIHYR-WDVEKLLAVLVEN 90 (590)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~-W~~e~l~~~~~~~ 90 (590)
+.|.++++ +|++...|+..|+... |+++.-++-+++.
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 11 SVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 34556666 5999999999999988 6899999998864
No 191
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.60 E-value=59 Score=25.75 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 52 KEDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 52 ~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
.+.|.+++++ |+ ....++..|+...||+++.++.++.
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456777775 77 4677799999999999999999984
No 192
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=39.15 E-value=23 Score=28.98 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=26.4
Q ss_pred CcccccccccccccccccC-ce-ecCCCCccchhhHHHHH
Q 007785 112 PLSSTVMCDICMEEVAGDK-AT-KMDCGHCFCNDCWTEHF 149 (590)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~-~~-~l~CgH~FC~~C~~~yi 149 (590)
+......|.+|...|.... -. --.||+.||..|....+
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3345578999998876421 12 23899999999977543
No 193
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.07 E-value=22 Score=30.47 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=21.9
Q ss_pred CcCCCCCCcceee-c---CCCCeeEec-cCcee
Q 007785 276 TKPCPKCHKPVEK-N---GGCNLVSCI-CGQAF 303 (590)
Q Consensus 276 tK~CPkC~~~IEK-n---~GCNHMtC~-Cg~~F 303 (590)
.+-||.|+.++.- . .|.+.+.|+ |++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 4789999987753 2 368899995 99977
No 194
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=37.51 E-value=22 Score=32.37 Aligned_cols=33 Identities=30% Similarity=0.738 Sum_probs=23.3
Q ss_pred CCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceeecCCCCeeEec--cCc
Q 007785 248 SPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCI--CGQ 301 (590)
Q Consensus 248 ~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn~GCNHMtC~--Cg~ 301 (590)
.|..|....+-.. .|.||+|..+++ ++-|+ ||+
T Consensus 97 RPAicdkAR~KQq---------------~k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 97 RPAICDKARQKQQ---------------RKSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp CCCSSHHHHHHHH---------------HSBCSSSCCBEE------EECCCTBTTB
T ss_pred chHHHHHHHHHhh---------------cCCCCCCCccee------eEeccCcCCC
Confidence 4888887544211 189999999998 67784 754
No 195
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=36.37 E-value=17 Score=34.14 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=19.8
Q ss_pred CcCCCCCCcc-eeecCCCCeeEe-ccCceeec
Q 007785 276 TKPCPKCHKP-VEKNGGCNLVSC-ICGQAFCW 305 (590)
Q Consensus 276 tK~CPkC~~~-IEKn~GCNHMtC-~Cg~~FCw 305 (590)
-+.||+|+.. +.....+.| +| +|++-|++
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred cccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 4899999965 344556655 77 67777644
No 196
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=35.65 E-value=12 Score=26.86 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
+.|.++.+ +|.+...|...|....||.+...+-++.
T Consensus 6 eaI~rL~~-mGF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKA-LGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTT-TTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34555554 4999999999999999999998888774
No 197
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=35.20 E-value=8 Score=33.56 Aligned_cols=37 Identities=19% Similarity=0.481 Sum_probs=0.0
Q ss_pred CCCCCCccee--ecCCCCeeEeccCceeeccccccccCC
Q 007785 278 PCPKCHKPVE--KNGGCNLVSCICGQAFCWLCGGATGRD 314 (590)
Q Consensus 278 ~CPkC~~~IE--Kn~GCNHMtC~Cg~~FCwlC~~~~~~~ 314 (590)
.|+.|..... ..+.|.-+.-.|+|.|+..|...|-..
T Consensus 61 ~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 61 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp ---------------------------------------
T ss_pred cChhhhcccccccccccccccCCcCceEcHHHHHHHHHc
Confidence 4555544321 134565566689999999999987543
No 198
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=34.38 E-value=28 Score=25.98 Aligned_cols=25 Identities=40% Similarity=1.071 Sum_probs=18.2
Q ss_pred cCCCCCCcceeecCCCCeeEec---cCcee
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCI---CGQAF 303 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~---Cg~~F 303 (590)
-.||.|+.+++-.. ..+.|. |+..|
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 58999999988766 556664 65544
No 199
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=34.14 E-value=32 Score=27.85 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=28.1
Q ss_pred CeeecCccCcCCCCCCchhhHHHHHhhhchHHhHHHHHhCCcCCCCCCcceeecCCCCeeEec--cCceeecccccc
Q 007785 236 AQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCI--CGQAFCWLCGGA 310 (590)
Q Consensus 236 ~~fC~~C~~~~H~p~sC~~~~~w~~~~~~e~e~~~~i~~~tK~CPkC~~~IEKn~GCNHMtC~--Cg~~FCwlC~~~ 310 (590)
..+|+.|+..-|..-.|... .+|.+|...-... -.|. =...+||.|++.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~---------------------~rcY~c~~~gh~~-----~~c~~p~~~~~CYnCG~~ 55 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI---------------------WRAYILVDDNEKA-----KPKVLPFHTIYCYNCGGK 55 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG---------------------TCCCCBC------------------CCCBCSSSSCB
T ss_pred cCCCCCCCCCCCccccCCCc---------------------ccccccccCCccc-----ccccCCCCCCeecccCCC
Confidence 35799999999998778642 2566666432100 1132 245799999987
No 200
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=33.17 E-value=90 Score=22.64 Aligned_cols=38 Identities=13% Similarity=0.361 Sum_probs=33.9
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 52 KEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 52 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
..++..++++| +++...++..|...++|++..++.+..
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46788889998 899999999999999999999988775
No 201
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=32.58 E-value=18 Score=32.03 Aligned_cols=29 Identities=17% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCcCCCCCCccee-ec---CCCCeeEec-cCcee
Q 007785 275 HTKPCPKCHKPVE-KN---GGCNLVSCI-CGQAF 303 (590)
Q Consensus 275 ~tK~CPkC~~~IE-Kn---~GCNHMtC~-Cg~~F 303 (590)
..+-||.|+.++- +. .|.+.+.|+ |+|.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 4589999998763 22 368899995 99965
No 202
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=32.44 E-value=55 Score=25.19 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhcC
Q 007785 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVENG 91 (590)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~~~ 91 (590)
++|..+.+..|++..+++.-|...+||+++-++.+-+++
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 456677888999999999999999999999998887544
No 203
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=32.00 E-value=11 Score=31.27 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=33.4
Q ss_pred cccccccccccccccCceecCC-CCccchhhHHHHHHhhhhcCCcccccccccccccccch
Q 007785 115 STVMCDICMEEVAGDKATKMDC-GHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~C-gH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~~~ 174 (590)
..+.|..|+-... . .+.| .|+.|..|+...+.. .=+||. |+..++-
T Consensus 27 G~~nCKsCWf~~k--~--LV~C~dHYLCl~CLtlmL~~--------SdrCpI--C~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENK--G--LVECNNHYLCLNCLTLLLSV--------SNRCPI--CKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCS--S--EEECSSCEEEHHHHHHTCSS--------SSEETT--TTEECCC
T ss_pred CcccChhhccccC--C--eeeecchhhHHHHHHHHHhh--------ccCCcc--cCCcCCc
Confidence 5688999987633 2 2345 599999999988764 238998 8877654
No 204
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=31.86 E-value=16 Score=30.97 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=17.7
Q ss_pred CCCCeeEeccCceeeccccccccCC
Q 007785 290 GGCNLVSCICGQAFCWLCGGATGRD 314 (590)
Q Consensus 290 ~GCNHMtC~Cg~~FCwlC~~~~~~~ 314 (590)
++|.-+.-.|+|.|+..|...|-..
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLKT 88 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHTT
T ss_pred ccceEeecccCcEECHHHHHHHHHc
Confidence 4555555579999999999887543
No 205
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=31.77 E-value=46 Score=30.91 Aligned_cols=30 Identities=7% Similarity=-0.148 Sum_probs=18.7
Q ss_pred ccccCCCCCCCCceEeecCcccceeeccCCCeeecCccC
Q 007785 206 MVKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (590)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~ 244 (590)
....|| -|...+. + + |.-+||+.||..|-.
T Consensus 105 ~~f~CP---I~~elm~---D--P-V~~~~Ghtfer~~I~ 134 (179)
T 2f42_A 105 DYLCGK---ISFELMR---E--P-CITPSGITYDRKDIE 134 (179)
T ss_dssp GGGBCT---TTCSBCS---S--E-EECTTSCEEEHHHHH
T ss_pred Hhhccc---CccccCC---C--C-eECCCCCEECHHHHH
Confidence 445787 4655443 1 1 333799999988754
No 206
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.02 E-value=67 Score=24.44 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHc-CCChHHHHHHHHhc
Q 007785 55 LRRVMELLSLREHHARTLLIHY-RWDVEKLLAVLVEN 90 (590)
Q Consensus 55 i~~v~~~l~i~~~~a~~LL~~~-~W~~e~l~~~~~~~ 90 (590)
|.++++ +|.+...|+..|+.. +||++..++-+++.
T Consensus 13 v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 13 LESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp HHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 445555 699999999999998 79999999988863
No 207
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.95 E-value=81 Score=25.46 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHc-CCChHHHHHHHHhc
Q 007785 54 DLRRVMELLSLREHHARTLLIHY-RWDVEKLLAVLVEN 90 (590)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~-~W~~e~l~~~~~~~ 90 (590)
.|.++++ +|++...|+..|++. +||++...+-+++.
T Consensus 32 ~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 32 IVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4555665 599999999888887 49999999888863
No 208
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=30.92 E-value=34 Score=33.22 Aligned_cols=21 Identities=29% Similarity=0.868 Sum_probs=16.3
Q ss_pred HhHHHHHhCCcCCCCCCc-ceee
Q 007785 267 ETVNWITVHTKPCPKCHK-PVEK 288 (590)
Q Consensus 267 e~~~~i~~~tK~CPkC~~-~IEK 288 (590)
-|..|+..|. -||+|+. +|.+
T Consensus 26 LTE~Wv~~n~-yCPnCG~~~l~~ 47 (257)
T 4esj_A 26 LTEDWVYRQS-YCPNCGNNPLNH 47 (257)
T ss_dssp HHHHHHHHHC-CCTTTCCSSCEE
T ss_pred hhHHHHHHCC-cCCCCCChhhhh
Confidence 4667888875 8999998 6764
No 209
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=30.83 E-value=22 Score=30.95 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=21.5
Q ss_pred CcCCCCCCcceee----cCCCCeeEec-cCcee
Q 007785 276 TKPCPKCHKPVEK----NGGCNLVSCI-CGQAF 303 (590)
Q Consensus 276 tK~CPkC~~~IEK----n~GCNHMtC~-Cg~~F 303 (590)
.+-||.|+.++.- ..+-+.+.|+ |++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 4789999987652 2668899994 99876
No 210
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.64 E-value=33 Score=31.10 Aligned_cols=41 Identities=22% Similarity=0.566 Sum_probs=30.7
Q ss_pred CcCCCCCCcceeecCCCCeeEe-ccCceeeccccccccCCCcc
Q 007785 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDHTW 317 (590)
Q Consensus 276 tK~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~~~~H~w 317 (590)
...|..|..+.---.+. -..| .|++.+|-.|+.....+..|
T Consensus 68 ~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~~~~~~~~W 109 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSHAHPEEQGW 109 (153)
T ss_dssp GTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEECCSSSSSC
T ss_pred CccchhhcCccccccCC-CCcCCCCCchhhcccccccCCCCcE
Confidence 47899999998766666 4788 59999999999654333444
No 211
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=30.55 E-value=24 Score=32.73 Aligned_cols=24 Identities=25% Similarity=0.930 Sum_probs=20.1
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCce
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQA 302 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~ 302 (590)
-.|++|+.++.+.+ ++|.| .||.-
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 37999999998866 99999 59864
No 212
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.06 E-value=24 Score=30.73 Aligned_cols=35 Identities=20% Similarity=0.562 Sum_probs=24.8
Q ss_pred ccccccccccccccccC-cee-cCCCCccchhhHHHH
Q 007785 114 SSTVMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTEH 148 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~-~~~-l~CgH~FC~~C~~~y 148 (590)
.....|.+|...|+... -.- -.||+.||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 44568999999876321 122 389999999997654
No 213
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=29.05 E-value=26 Score=34.65 Aligned_cols=25 Identities=40% Similarity=0.955 Sum_probs=18.5
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccCc
Q 007785 277 KPCPKCHKPVEK--NGGCNLVSC-ICGQ 301 (590)
Q Consensus 277 K~CPkC~~~IEK--n~GCNHMtC-~Cg~ 301 (590)
++||.|+.+|++ .+|=.-.+| .|+.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 799999999996 456555666 3653
No 214
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.92 E-value=36 Score=29.63 Aligned_cols=33 Identities=27% Similarity=0.663 Sum_probs=24.3
Q ss_pred CcCCCCCCcceeecCCCCeeEec-cCceeecccccc
Q 007785 276 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (590)
Q Consensus 276 tK~CPkC~~~IEKn~GCNHMtC~-Cg~~FCwlC~~~ 310 (590)
...|+.|+....- .--.-.|+ ||.-||..|...
T Consensus 69 ~~~C~~C~~~Fs~--~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSV--TVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCcccc--ccccccCCCCCeEEChHHhCC
Confidence 4679999987642 12335795 999999999764
No 215
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=28.88 E-value=60 Score=30.44 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
.|+++.+ +|++.+.|+..|..++||++...+.++.
T Consensus 166 kV~~l~~-MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 166 KIENLCA-MGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 3444433 4999999999999999999999988773
No 216
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.76 E-value=60 Score=26.67 Aligned_cols=49 Identities=22% Similarity=0.607 Sum_probs=34.2
Q ss_pred cccccccccccccc---cCceec--CCCCccchhhHHHHHHhhhhcCCccccccccccccccc
Q 007785 115 STVMCDICMEEVAG---DKATKM--DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (590)
Q Consensus 115 ~~~~C~IC~e~~~~---~~~~~l--~CgH~FC~~C~~~yi~~~I~~g~~~~i~CP~~~C~~~~ 172 (590)
....|.||-+++-. .++|.. .|+-..|+.|+..- .++|. -.||. |+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE----rkeG~---q~Cpq--CktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE----RREGT---QNCPQ--CKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH----HHTSC---SSCTT--TCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH----HhccC---ccccc--cCCcc
Confidence 45789999999543 234433 78899999997654 34565 57988 77654
No 217
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.44 E-value=52 Score=27.47 Aligned_cols=26 Identities=38% Similarity=0.968 Sum_probs=17.8
Q ss_pred cCCCCCCcceeecCCCCeeEeccC--ceeeccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCICG--QAFCWLCGG 309 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~Cg--~~FCwlC~~ 309 (590)
-.||.|+.++|+-.. || -.||-.|-+
T Consensus 62 a~CPdC~q~LevLkA-------CGAvdYFC~~chg 89 (101)
T 2jne_A 62 ALCPDCHQPLQVLKA-------CGAVDYFCQHGHG 89 (101)
T ss_dssp EECTTTCSBCEEEEE-------TTEEEEEETTTTE
T ss_pred ccCcchhhHHHHHHH-------hcCcchhhccCCc
Confidence 489999999995443 44 356666644
No 218
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=28.40 E-value=22 Score=35.26 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=24.2
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~ 311 (590)
-.||-|..++. +-++- .|||.||-.|...|
T Consensus 182 l~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~ 212 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISRKCNHVFDRDGIQNY 212 (267)
T ss_dssp SBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHH
T ss_pred eECcCccCccc-----CCeeeCCCCCcccHHHHHHH
Confidence 58999998885 45777 69999999998775
No 219
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=28.32 E-value=29 Score=31.31 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=20.1
Q ss_pred CcCCCC--CCcceeecCCCCeeEe-ccCceeec
Q 007785 276 TKPCPK--CHKPVEKNGGCNLVSC-ICGQAFCW 305 (590)
Q Consensus 276 tK~CPk--C~~~IEKn~GCNHMtC-~Cg~~FCw 305 (590)
-+.||+ |+.-+--..-=+..+| +|++-+++
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 378999 9886542111145789 79988775
No 220
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=28.20 E-value=28 Score=28.06 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=25.6
Q ss_pred cccccccccccccccccC-cee-cCCCCccchhhHHHH
Q 007785 113 LSSTVMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTEH 148 (590)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~-~~~-l~CgH~FC~~C~~~y 148 (590)
..+...|.+|...|..-. -.- -.||+.||..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345678999999887422 122 389999999997654
No 221
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=27.78 E-value=23 Score=35.08 Aligned_cols=25 Identities=28% Similarity=0.763 Sum_probs=18.7
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccCc
Q 007785 277 KPCPKCHKPVEK--NGGCNLVSC-ICGQ 301 (590)
Q Consensus 277 K~CPkC~~~IEK--n~GCNHMtC-~Cg~ 301 (590)
++||.|+.+|++ .+|=.-.+| .|+.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 799999999996 466556666 4653
No 222
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.62 E-value=1.2e+02 Score=23.52 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 51 QKEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 51 ~~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
..+.+..++++| +|.....+..|...+++++..++.+..
T Consensus 18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 345566788889 899999999999999999999998874
No 223
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=27.55 E-value=4.4e+02 Score=25.76 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH-----HHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHHHHHHHhh
Q 007785 333 AKKTERAKRELYRYMH-YHNRYKAHTDSFKLE-----SKLKETVLEKVSISEERESRLRDF--SWVTNGLYRLFRSRRVL 404 (590)
Q Consensus 333 ~~~~~~~k~~l~ry~~-y~~r~~~h~~s~k~e-----~~l~~~i~~k~~~~~~~~~~~~~~--~~l~~a~~~l~~~R~vL 404 (590)
....+..+..|..|.. +..+...+...++.. .+++..+...+..+.....+..+- +-|...+..|.+
T Consensus 65 ~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~----- 139 (273)
T 3s84_A 65 NTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR----- 139 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHH-----
Q ss_pred hccccceeecccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 007785 405 SYSYPFAFYMFGEELFKDEMTDEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYPDDKVMEIRMQVINLSVITDTLC 484 (590)
Q Consensus 405 ~~SY~~ayy~~~~~~~~~~~~~~~~~~~~~lfe~~Q~~lE~~~E~Ls~~le~~~~~~~~~~i~~~k~~~~~l~~~~~~~~ 484 (590)
.....+++-......-++.+..+|+.+++.|...|+.. +..+|.++.-++.-+...+
T Consensus 140 ---------------~l~P~ae~~~~kl~~~~e~L~~ql~~~a~~L~~~l~~~--------~eeLr~~L~p~ae~lr~~l 196 (273)
T 3s84_A 140 ---------------SLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISAS--------AEELRQRLAPLAEDVRGNL 196 (273)
T ss_dssp ---------------HHGGGCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHTS
T ss_pred ---------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhh
Q 007785 485 KKMYECIENDL 495 (590)
Q Consensus 485 ~~l~~~~e~~l 495 (590)
...++.+...|
T Consensus 197 ~~~~e~l~~~l 207 (273)
T 3s84_A 197 RGNTEGLQKSL 207 (273)
T ss_dssp SSCHHHHHHHH
T ss_pred HHHHHHHHHhH
No 224
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.15 E-value=3.9e+02 Score=27.61 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhhhhhc
Q 007785 485 KKMYECIENDLLGCLQ 500 (590)
Q Consensus 485 ~~l~~~~e~~l~~~~~ 500 (590)
+.|...+..+|+..+.
T Consensus 186 KQL~qv~a~~llP~~~ 201 (390)
T 1deq_A 186 KQLEQVIAINLLPSRD 201 (390)
T ss_pred HHHHhhhhhccccccc
Confidence 3466666667775554
No 225
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=27.14 E-value=23 Score=35.14 Aligned_cols=24 Identities=38% Similarity=0.933 Sum_probs=18.2
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 007785 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (590)
Q Consensus 277 K~CPkC~~~IEK--n~GCNHMtC-~Cg 300 (590)
++||.|+.+|+| .+|=.-.+| .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 799999999997 466555666 365
No 226
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.94 E-value=28 Score=27.91 Aligned_cols=34 Identities=29% Similarity=0.748 Sum_probs=24.1
Q ss_pred cccccccccccccccC-ce-ecCCCCccchhhHHHH
Q 007785 115 STVMCDICMEEVAGDK-AT-KMDCGHCFCNDCWTEH 148 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~-~~-~l~CgH~FC~~C~~~y 148 (590)
+...|.+|...|.... -. --.||..||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4467999999876321 11 2389999999997653
No 227
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.91 E-value=1.4e+02 Score=22.22 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHcCCChHHHHHHHHh
Q 007785 52 KEDLRRVMELLSLR-EHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 52 ~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
.+.|+++.++ |.+ ...++..|+...||+++.++.++.
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4567777775 774 667799999999999999999884
No 228
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=26.78 E-value=1.4e+02 Score=21.03 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHcCCChHHHHHHHH
Q 007785 52 KEDLRRVMELLSLR-EHHARTLLIHYRWDVEKLLAVLV 88 (590)
Q Consensus 52 ~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~e~l~~~~~ 88 (590)
.+.|.++.++ |.+ ...++..|+...||+++.++.++
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4566777765 775 55679999999999999998877
No 229
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=26.57 E-value=25 Score=34.80 Aligned_cols=24 Identities=25% Similarity=0.715 Sum_probs=18.0
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 007785 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (590)
Q Consensus 277 K~CPkC~~~IEK--n~GCNHMtC-~Cg 300 (590)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999996 456555666 365
No 230
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.51 E-value=2e+02 Score=31.14 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCC--CchHHHHHHHHHHHHHHHHHH
Q 007785 434 HLFEDQQQQLEANVEKLSKFLEEPFDQY--PDDKVMEIRMQVINLSVITDT 482 (590)
Q Consensus 434 ~lfe~~Q~~lE~~~E~Ls~~le~~~~~~--~~~~i~~~k~~~~~l~~~~~~ 482 (590)
+.+...-.+|+++++.|.+.|...+..+ +...|.+++.++..|-.-|+.
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554433221 122245555555555555544
No 231
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.49 E-value=23 Score=30.79 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=22.9
Q ss_pred CcccccccccccccccccC--ceecCCCCccchhhHHHHH
Q 007785 112 PLSSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 149 (590)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~--~~~l~CgH~FC~~C~~~yi 149 (590)
|......|..|-..|+... -.--.||..||..|....+
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 3445578999998876321 1223899999999976554
No 232
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=26.38 E-value=37 Score=29.90 Aligned_cols=28 Identities=29% Similarity=0.876 Sum_probs=19.8
Q ss_pred CCcCCCCCCcceeecCCCCeeEec-cCcee
Q 007785 275 HTKPCPKCHKPVEKNGGCNLVSCI-CGQAF 303 (590)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCNHMtC~-Cg~~F 303 (590)
..-.||+|.....=..|= .+.|. |+++|
T Consensus 26 ~lP~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecCC-eEECCcccccc
Confidence 457999999876655553 47774 88776
No 233
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.31 E-value=38 Score=32.54 Aligned_cols=33 Identities=21% Similarity=0.550 Sum_probs=23.8
Q ss_pred ccccccccccccccC-cee-cCCCCccchhhHHHH
Q 007785 116 TVMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTEH 148 (590)
Q Consensus 116 ~~~C~IC~e~~~~~~-~~~-l~CgH~FC~~C~~~y 148 (590)
...|.+|...|+.-. -.. -.||+.||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 358999998877421 122 389999999997654
No 234
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=26.29 E-value=63 Score=27.71 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=6.9
Q ss_pred eecCccCc-CCCCCCc
Q 007785 238 FCFSCLSE-AHSPCSC 252 (590)
Q Consensus 238 fC~~C~~~-~H~p~sC 252 (590)
.|+.|+.. -|....|
T Consensus 24 ~C~~Cg~~~gH~~~~C 39 (124)
T 2lli_A 24 ICSYCGATDDHYSRHC 39 (124)
T ss_dssp CCTTTCCTTTCCTTTG
T ss_pred cCcCCCCcCCccCccc
Confidence 44444444 4444444
No 235
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.04 E-value=37 Score=32.31 Aligned_cols=32 Identities=28% Similarity=0.699 Sum_probs=23.9
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeecccccc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~-Cg~~FCwlC~~~ 310 (590)
..|+.|+...-- .--.-.|+ ||.-||..|...
T Consensus 162 ~~C~~C~~~F~~--~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTF--TNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCS--SSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCC--cccccccCCcCCEEChHHhCC
Confidence 589999887641 22336796 999999999864
No 236
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=25.85 E-value=26 Score=34.60 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=18.1
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 007785 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (590)
Q Consensus 277 K~CPkC~~~IEK--n~GCNHMtC-~Cg 300 (590)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 689999999986 456656666 465
No 237
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=25.45 E-value=47 Score=24.85 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=15.2
Q ss_pred CcCCCCCCc-ceeecCCCCeeEe-ccCc
Q 007785 276 TKPCPKCHK-PVEKNGGCNLVSC-ICGQ 301 (590)
Q Consensus 276 tK~CPkC~~-~IEKn~GCNHMtC-~Cg~ 301 (590)
...||.|+. .|.....=.-+.| .||.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 358999976 5554433334666 3654
No 238
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=25.38 E-value=55 Score=28.10 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=14.8
Q ss_pred eeecCccCcCCCCCCchh
Q 007785 237 QFCFSCLSEAHSPCSCSM 254 (590)
Q Consensus 237 ~fC~~C~~~~H~p~sC~~ 254 (590)
..|+.|+..-|.-..|..
T Consensus 5 ~~C~~C~~~GH~~~~Cp~ 22 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPH 22 (124)
T ss_dssp SCCSSCSSSSCCTTTTTS
T ss_pred CcccCCCCCCcCcccCcC
Confidence 469999999999877764
No 239
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=25.15 E-value=20 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.704 Sum_probs=12.8
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCc
Q 007785 277 KPCPKCHKPVEKNGGCNLVSCI-CGQ 301 (590)
Q Consensus 277 K~CPkC~~~IEKn~GCNHMtC~-Cg~ 301 (590)
-.|+.|+..++...+ .-+.|+ ||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 357777777554322 335553 554
No 240
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=24.37 E-value=1e+02 Score=30.12 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
+.|+++.+ .|++.+.|+..|..++|+.+..++.++.
T Consensus 217 ~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 217 KKIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 33444433 3999999999999999999999998874
No 241
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.12 E-value=27 Score=30.91 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=21.8
Q ss_pred ccccccccccccc-cC--ceecCCCCccchhhH
Q 007785 116 TVMCDICMEEVAG-DK--ATKMDCGHCFCNDCW 145 (590)
Q Consensus 116 ~~~C~IC~e~~~~-~~--~~~l~CgH~FC~~C~ 145 (590)
.-.|.+|..++.. .. ..-..|.|.+|..|=
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 4689999999742 22 223389999999993
No 242
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.69 E-value=49 Score=29.23 Aligned_cols=36 Identities=28% Similarity=0.615 Sum_probs=27.7
Q ss_pred CCcCCCCCCcceeecCCCCeeEe-ccCceeeccccccc
Q 007785 275 HTKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (590)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCNHMtC-~Cg~~FCwlC~~~~ 311 (590)
+...|..|..+.---++.. ..| .|++.+|-.|++..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcccccCCC-CCCCCCCcccccccCCcc
Confidence 3478999998885555554 678 59999999999863
No 243
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=22.41 E-value=22 Score=23.91 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.3
Q ss_pred cccccccccccccc
Q 007785 114 SSTVMCDICMEEVA 127 (590)
Q Consensus 114 ~~~~~C~IC~e~~~ 127 (590)
++.|.||||+..+.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 45699999998765
No 244
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.26 E-value=3.3e+02 Score=29.39 Aligned_cols=13 Identities=54% Similarity=0.636 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q 007785 434 HLFEDQQQQLEAN 446 (590)
Q Consensus 434 ~lfe~~Q~~lE~~ 446 (590)
+-++.+|+|||..
T Consensus 176 ~sY~~~QKQLeQv 188 (562)
T 3ghg_A 176 KDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4688888888754
No 245
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=22.23 E-value=44 Score=27.22 Aligned_cols=27 Identities=26% Similarity=0.785 Sum_probs=18.5
Q ss_pred cCCCCCCcc--e----eecCCCCeeEec-cCcee
Q 007785 277 KPCPKCHKP--V----EKNGGCNLVSCI-CGQAF 303 (590)
Q Consensus 277 K~CPkC~~~--I----EKn~GCNHMtC~-Cg~~F 303 (590)
=.||.|+.. | .|..|=-++.|+ ||..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 479988765 2 345566678884 88776
No 246
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=21.80 E-value=1.6e+02 Score=26.12 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=33.0
Q ss_pred cccccccccccccccCceec-CCCCccchhhHHHHHHh----hh--hcCCccccccccccccc
Q 007785 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIV----KI--NEGQSKRIRCMAHKCNA 170 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~FC~~C~~~yi~~----~I--~~g~~~~i~CP~~~C~~ 170 (590)
....|.||.+. .+.+.. .|-..||..|+..-+.. .| .+| +-.||. |..
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~---~W~C~~--C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENN---QWYCYI--CHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT---CCCCTT--TCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC---CCEeec--ccC
Confidence 35689999875 344444 89999999999977642 22 334 368988 554
No 247
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.60 E-value=38 Score=27.18 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=23.7
Q ss_pred ccccccccccccccccC-ce-ecCCCCccchhhHHH
Q 007785 114 SSTVMCDICMEEVAGDK-AT-KMDCGHCFCNDCWTE 147 (590)
Q Consensus 114 ~~~~~C~IC~e~~~~~~-~~-~l~CgH~FC~~C~~~ 147 (590)
.+...|.+|...|..-. -. --.||..||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34568999998876321 11 237999999999554
No 248
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.32 E-value=1.5e+02 Score=20.72 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 007785 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (590)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~e~l~~~~~~ 89 (590)
.|.++++ +|.+...|+..|+..+ |++..++-++.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 12 QLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 4555666 5899999999999997 99888877763
No 249
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.33 E-value=43 Score=26.11 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=22.6
Q ss_pred cccccccccccccC-cee-cCCCCccchhhHHHH
Q 007785 117 VMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTEH 148 (590)
Q Consensus 117 ~~C~IC~e~~~~~~-~~~-l~CgH~FC~~C~~~y 148 (590)
..|.+|...|..-. ..- -.||..||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 37999998876321 122 379999999997543
No 250
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.25 E-value=51 Score=29.81 Aligned_cols=31 Identities=16% Similarity=0.564 Sum_probs=22.7
Q ss_pred cccccccccccccc--cCc-eecCCCCccchhhH
Q 007785 115 STVMCDICMEEVAG--DKA-TKMDCGHCFCNDCW 145 (590)
Q Consensus 115 ~~~~C~IC~e~~~~--~~~-~~l~CgH~FC~~C~ 145 (590)
..-.|.+|..+|.. +.. .-..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 35789999998643 222 23389999999996
No 251
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.07 E-value=88 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=21.6
Q ss_pred cccccccccccccccCceecCCCCccch
Q 007785 115 STVMCDICMEEVAGDKATKMDCGHCFCN 142 (590)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~FC~ 142 (590)
....|..|-..+.....+...||..||.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~ 51 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCA 51 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECT
T ss_pred cCccchhhCCeecccCCeEcCCCCEecc
Confidence 4568999998765434677789999997
Done!