BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007787
         (589 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 28.9 bits (63), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 89/249 (35%), Gaps = 50/249 (20%)

Query: 319 ETARKLLNLGTIVLEEYPAGXXXXXXXXXXXXXXXXXKHLPASLCNLLNLYTIDMPSSYV 378
           +  R  L L ++ L ++P                     LP +      L T+ +  + +
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPL 139

Query: 379 RCTPDSIGKMHELRHLNFRT----ITLPAHPGKFCTSLENLNFISVLHPSSCTRDILG-- 432
           R  P SI  ++ LR L+ R       LP        S E+   +++    S   +  G  
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL---QSLRLEWTGIR 196

Query: 433 RLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDDPMPXXXXXX 492
            LP+    L++LK    LKI +   S + P     P L EL L                 
Sbjct: 197 SLPASIANLQNLK---SLKIRNSPLSALGPAIHHLPKLEELDL----------------- 236

Query: 493 XXXXXXXXXNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWR 552
                                GC  +L+ +   F     L+ LI+  C++L  LP D+ R
Sbjct: 237 --------------------RGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 553 VKSLTKLEL 561
           +  L KL+L
Sbjct: 276 LTQLEKLDL 284


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.140    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,958,013
Number of Sequences: 62578
Number of extensions: 613597
Number of successful extensions: 1294
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 3
length of query: 589
length of database: 14,973,337
effective HSP length: 104
effective length of query: 485
effective length of database: 8,465,225
effective search space: 4105634125
effective search space used: 4105634125
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)