Query 007787
Match_columns 589
No_of_seqs 519 out of 3825
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 15:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.1E-57 6.7E-62 504.9 28.9 531 2-547 51-846 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.8E-43 6E-48 413.0 34.4 209 91-314 182-463 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-30 5.4E-35 260.6 13.1 215 98-318 1-283 (287)
4 PLN00113 leucine-rich repeat r 99.8 1.7E-20 3.6E-25 220.1 12.2 236 323-565 167-439 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.6E-20 3.5E-25 220.3 11.1 236 323-565 191-463 (968)
6 KOG0444 Cytoskeletal regulator 99.8 2.6E-22 5.7E-27 205.0 -4.0 273 303-583 53-393 (1255)
7 KOG0472 Leucine-rich repeat pr 99.7 4E-19 8.6E-24 173.7 -1.8 251 303-566 226-540 (565)
8 KOG0472 Leucine-rich repeat pr 99.7 2.4E-19 5.2E-24 175.2 -6.8 92 460-568 220-311 (565)
9 KOG0444 Cytoskeletal regulator 99.7 1.3E-18 2.9E-23 178.2 -3.7 223 323-565 10-256 (1255)
10 KOG4194 Membrane glycoprotein 99.7 3.4E-18 7.3E-23 174.3 -1.8 224 325-562 202-447 (873)
11 KOG4194 Membrane glycoprotein 99.6 8.6E-17 1.9E-21 164.2 4.8 223 323-565 81-352 (873)
12 KOG0617 Ras suppressor protein 99.6 1.4E-17 3.1E-22 145.0 -4.1 176 338-565 28-210 (264)
13 KOG4237 Extracellular matrix p 99.6 5.2E-17 1.1E-21 158.9 -3.6 221 325-565 72-357 (498)
14 KOG0617 Ras suppressor protein 99.6 6.3E-17 1.4E-21 141.1 -4.3 152 325-491 38-195 (264)
15 PLN03210 Resistant to P. syrin 99.5 4.1E-14 9E-19 167.2 13.3 223 323-565 592-836 (1153)
16 KOG0618 Serine/threonine phosp 99.5 6.8E-16 1.5E-20 165.6 -3.0 213 323-565 244-487 (1081)
17 KOG0618 Serine/threonine phosp 99.5 1.5E-15 3.3E-20 163.0 -3.3 100 307-406 23-134 (1081)
18 PRK15387 E3 ubiquitin-protein 99.5 3.5E-13 7.6E-18 148.9 13.7 35 530-565 422-456 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 1.5E-13 3.3E-18 152.6 7.9 204 323-566 202-427 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 1.5E-12 3.3E-17 144.7 10.7 202 323-565 181-399 (754)
21 PRK15387 E3 ubiquitin-protein 99.2 1.7E-11 3.6E-16 135.8 9.5 198 323-550 245-465 (788)
22 cd00116 LRR_RI Leucine-rich re 99.2 5.6E-13 1.2E-17 136.2 -2.8 229 323-565 26-289 (319)
23 KOG4237 Extracellular matrix p 99.2 1.4E-12 3E-17 128.2 -3.3 198 323-542 94-358 (498)
24 cd00116 LRR_RI Leucine-rich re 99.2 8.2E-13 1.8E-17 135.0 -5.8 224 325-565 3-261 (319)
25 KOG0532 Leucine-rich repeat (L 99.0 2.4E-11 5.1E-16 124.8 -1.7 160 324-500 102-268 (722)
26 KOG0532 Leucine-rich repeat (L 99.0 9.9E-12 2.1E-16 127.5 -5.6 167 324-507 79-249 (722)
27 KOG3207 Beta-tubulin folding c 98.9 1.5E-10 3.2E-15 115.7 -2.1 75 323-397 124-205 (505)
28 COG4886 Leucine-rich repeat (L 98.9 1.1E-09 2.4E-14 115.5 4.2 169 323-507 119-292 (394)
29 COG4886 Leucine-rich repeat (L 98.8 2.7E-09 5.8E-14 112.6 4.5 192 325-547 98-294 (394)
30 KOG4658 Apoptotic ATPase [Sign 98.8 1.4E-08 3.1E-13 115.1 8.3 221 329-557 532-797 (889)
31 KOG3207 Beta-tubulin folding c 98.7 4.5E-09 9.8E-14 105.2 1.4 212 334-565 112-337 (505)
32 KOG1909 Ran GTPase-activating 98.6 2.4E-10 5.2E-15 111.2 -8.9 228 323-566 33-310 (382)
33 PF14580 LRR_9: Leucine-rich r 98.6 1.6E-08 3.5E-13 92.4 3.3 96 323-421 22-124 (175)
34 PF14580 LRR_9: Leucine-rich r 98.6 1.1E-08 2.4E-13 93.4 0.9 136 328-499 5-147 (175)
35 KOG1259 Nischarin, modulator o 98.6 6.6E-09 1.4E-13 99.1 -0.6 198 336-565 207-410 (490)
36 KOG1909 Ran GTPase-activating 98.4 1.5E-08 3.2E-13 99.0 -4.1 213 338-566 25-282 (382)
37 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.7E-12 69.6 2.8 60 468-541 1-60 (61)
38 PLN03150 hypothetical protein; 98.3 6E-07 1.3E-11 99.7 6.4 75 323-397 421-498 (623)
39 PLN03150 hypothetical protein; 98.3 4.1E-07 8.9E-12 101.0 4.4 92 460-565 433-526 (623)
40 KOG1259 Nischarin, modulator o 98.3 9E-08 1.9E-12 91.5 -1.2 125 324-482 288-413 (490)
41 PF13855 LRR_8: Leucine rich r 98.3 8.8E-07 1.9E-11 66.3 4.4 54 324-377 5-60 (61)
42 KOG0531 Protein phosphatase 1, 98.3 1.4E-07 3E-12 100.0 -0.6 167 323-507 98-270 (414)
43 PF12799 LRR_4: Leucine Rich r 98.2 1.7E-06 3.6E-11 59.7 4.1 40 343-382 1-40 (44)
44 KOG0531 Protein phosphatase 1, 98.1 2.7E-07 5.8E-12 97.8 -1.8 167 325-507 77-247 (414)
45 KOG2120 SCF ubiquitin ligase, 98.0 1.1E-07 2.3E-12 91.0 -6.5 173 368-565 187-374 (419)
46 KOG2120 SCF ubiquitin ligase, 98.0 2.7E-07 5.9E-12 88.3 -4.0 75 323-397 188-268 (419)
47 KOG1859 Leucine-rich repeat pr 97.9 2E-07 4.4E-12 98.8 -8.1 41 525-565 249-290 (1096)
48 KOG2982 Uncharacterized conser 97.9 2E-06 4.3E-11 82.5 -1.3 215 324-565 49-290 (418)
49 PF12799 LRR_4: Leucine Rich r 97.7 4.4E-05 9.6E-10 52.6 3.3 38 323-360 4-41 (44)
50 KOG4579 Leucine-rich repeat (L 97.6 5.5E-06 1.2E-10 70.6 -2.7 92 324-416 31-129 (177)
51 COG5238 RNA1 Ran GTPase-activa 97.5 9.4E-06 2E-10 77.0 -2.2 96 340-450 27-131 (388)
52 KOG3665 ZYG-1-like serine/thre 97.5 1.4E-05 3E-10 88.8 -2.0 147 323-498 125-281 (699)
53 PRK15386 type III secretion pr 97.4 0.00027 5.9E-09 72.7 7.0 129 323-478 55-187 (426)
54 KOG3665 ZYG-1-like serine/thre 97.4 6.9E-05 1.5E-09 83.4 2.2 74 323-397 151-228 (699)
55 PRK15386 type III secretion pr 97.3 0.00085 1.8E-08 69.2 8.6 139 339-503 48-188 (426)
56 KOG1859 Leucine-rich repeat pr 97.1 3.4E-05 7.3E-10 82.5 -3.8 96 323-422 190-291 (1096)
57 KOG2982 Uncharacterized conser 97.0 7.7E-05 1.7E-09 71.8 -1.9 207 342-574 44-267 (418)
58 COG5238 RNA1 Ran GTPase-activa 97.0 2.1E-05 4.6E-10 74.7 -5.6 176 324-504 34-254 (388)
59 KOG4579 Leucine-rich repeat (L 97.0 7.3E-05 1.6E-09 63.9 -1.9 74 324-397 57-131 (177)
60 KOG1644 U2-associated snRNP A' 97.0 0.0011 2.3E-08 60.8 4.9 73 324-397 46-121 (233)
61 KOG1644 U2-associated snRNP A' 96.8 0.0021 4.6E-08 58.8 5.6 108 438-565 41-151 (233)
62 KOG4341 F-box protein containi 96.4 0.00012 2.5E-09 73.8 -5.8 111 464-574 316-446 (483)
63 KOG4341 F-box protein containi 96.4 0.00038 8.3E-09 70.2 -2.4 38 526-563 422-461 (483)
64 PRK00411 cdc6 cell division co 96.4 0.047 1E-06 57.5 13.1 142 91-238 28-220 (394)
65 TIGR03015 pepcterm_ATPase puta 96.3 0.053 1.1E-06 53.8 12.1 116 137-257 81-240 (269)
66 PRK04841 transcriptional regul 96.2 0.039 8.4E-07 64.9 12.6 192 103-297 19-278 (903)
67 PF00560 LRR_1: Leucine Rich R 95.9 0.0037 8.1E-08 35.8 1.0 17 345-361 2-18 (22)
68 PF00560 LRR_1: Leucine Rich R 95.8 0.0053 1.2E-07 35.2 1.4 22 367-388 1-22 (22)
69 PF05729 NACHT: NACHT domain 95.5 0.048 1E-06 49.3 7.6 61 177-237 79-162 (166)
70 KOG2123 Uncharacterized conser 95.4 0.0024 5.1E-08 61.3 -1.8 91 323-416 22-123 (388)
71 KOG2739 Leucine-rich acidic nu 95.3 0.01 2.2E-07 56.7 2.2 72 325-397 48-124 (260)
72 KOG1947 Leucine rich repeat pr 94.9 0.0032 6.9E-08 68.0 -2.9 221 342-566 187-439 (482)
73 KOG2123 Uncharacterized conser 94.7 0.0031 6.8E-08 60.5 -3.0 77 342-421 18-99 (388)
74 KOG2739 Leucine-rich acidic nu 94.6 0.017 3.7E-07 55.3 1.6 109 437-565 41-154 (260)
75 TIGR02928 orc1/cdc6 family rep 94.5 0.75 1.6E-05 47.8 13.9 143 92-238 14-212 (365)
76 PF13504 LRR_7: Leucine rich r 93.7 0.041 8.9E-07 29.2 1.3 15 367-381 2-16 (17)
77 PF13504 LRR_7: Leucine rich r 93.6 0.048 1E-06 29.0 1.6 17 343-359 1-17 (17)
78 PF01637 Arch_ATPase: Archaeal 93.3 0.14 3E-06 49.2 5.4 27 95-124 1-27 (234)
79 KOG0473 Leucine-rich repeat pr 92.0 0.0039 8.4E-08 58.3 -6.9 75 323-397 45-119 (326)
80 PRK05564 DNA polymerase III su 91.4 1.9 4.2E-05 43.7 11.2 76 178-253 93-188 (313)
81 PF13173 AAA_14: AAA domain 91.2 0.34 7.3E-06 42.0 4.7 61 169-229 51-126 (128)
82 smart00370 LRR Leucine-rich re 90.5 0.22 4.7E-06 29.7 2.0 19 343-361 2-20 (26)
83 smart00369 LRR_TYP Leucine-ric 90.5 0.22 4.7E-06 29.7 2.0 19 343-361 2-20 (26)
84 PRK06893 DNA replication initi 90.2 0.17 3.6E-06 49.0 2.0 61 181-241 93-177 (229)
85 PTZ00112 origin recognition co 88.8 7.4 0.00016 44.5 13.5 143 92-240 754-951 (1164)
86 smart00370 LRR Leucine-rich re 88.4 0.33 7.1E-06 28.9 1.6 21 365-385 1-21 (26)
87 smart00369 LRR_TYP Leucine-ric 88.4 0.33 7.1E-06 28.9 1.6 21 365-385 1-21 (26)
88 PF13306 LRR_5: Leucine rich r 87.1 0.82 1.8E-05 39.2 4.1 36 464-500 54-89 (129)
89 PF13306 LRR_5: Leucine rich r 86.7 1.1 2.4E-05 38.4 4.7 57 338-396 7-65 (129)
90 PRK13342 recombination factor 86.7 5.7 0.00012 42.1 11.0 59 177-238 90-164 (413)
91 KOG1947 Leucine rich repeat pr 86.3 0.048 1E-06 58.8 -5.1 196 364-573 186-420 (482)
92 KOG2543 Origin recognition com 85.1 3.8 8.3E-05 41.8 8.0 100 91-191 4-127 (438)
93 KOG0473 Leucine-rich repeat pr 84.4 0.04 8.7E-07 51.8 -5.7 83 338-421 37-122 (326)
94 PF13401 AAA_22: AAA domain; P 84.2 4.9 0.00011 34.4 7.7 80 130-215 39-124 (131)
95 KOG3864 Uncharacterized conser 83.4 0.11 2.3E-06 48.0 -3.3 86 468-565 101-187 (221)
96 COG2909 MalT ATP-dependent tra 82.9 4.5 9.8E-05 45.5 8.1 109 130-238 66-207 (894)
97 TIGR00635 ruvB Holliday juncti 79.4 4.7 0.0001 40.6 6.6 47 207-253 130-199 (305)
98 KOG4308 LRR-containing protein 78.2 0.011 2.3E-07 63.4 -13.7 20 337-356 109-128 (478)
99 PF13191 AAA_16: AAA ATPase do 77.5 7.8 0.00017 35.4 7.0 30 94-124 1-31 (185)
100 KOG4308 LRR-containing protein 77.2 0.014 3E-07 62.5 -13.2 74 305-379 87-185 (478)
101 TIGR02903 spore_lon_C ATP-depe 76.3 4.2 9.2E-05 45.4 5.5 72 167-238 280-366 (615)
102 COG1373 Predicted ATPase (AAA+ 76.1 5.8 0.00013 41.7 6.2 78 179-257 94-194 (398)
103 cd00009 AAA The AAA+ (ATPases 75.8 30 0.00065 29.5 10.0 43 176-218 81-131 (151)
104 KOG2227 Pre-initiation complex 74.8 16 0.00035 38.5 8.7 144 91-239 148-339 (529)
105 PRK00080 ruvB Holliday junctio 74.2 14 0.0003 37.7 8.4 47 207-253 151-220 (328)
106 cd01128 rho_factor Transcripti 74.0 5.3 0.00012 39.0 4.9 62 125-191 44-115 (249)
107 COG1474 CDC6 Cdc6-related prot 73.3 55 0.0012 34.0 12.4 160 93-257 17-226 (366)
108 smart00364 LRR_BAC Leucine-ric 71.7 2.3 4.9E-05 25.4 1.0 17 344-360 3-19 (26)
109 KOG3864 Uncharacterized conser 67.3 1.1 2.4E-05 41.6 -1.4 74 323-397 104-184 (221)
110 smart00365 LRR_SD22 Leucine-ri 67.3 4.1 8.9E-05 24.3 1.5 14 343-356 2-15 (26)
111 PRK07003 DNA polymerase III su 66.7 25 0.00054 39.9 8.6 61 178-238 118-191 (830)
112 PF13516 LRR_6: Leucine Rich r 66.3 1.8 3.8E-05 25.1 -0.2 14 343-356 2-15 (24)
113 PRK14963 DNA polymerase III su 65.2 7.7 0.00017 42.1 4.3 61 178-238 115-188 (504)
114 PRK07471 DNA polymerase III su 64.8 20 0.00043 37.2 7.1 78 178-255 140-238 (365)
115 PRK00440 rfc replication facto 64.2 1E+02 0.0022 30.9 12.3 134 92-238 16-174 (319)
116 TIGR00767 rho transcription te 62.9 20 0.00043 37.5 6.5 65 125-191 196-267 (415)
117 PHA02544 44 clamp loader, smal 57.6 1.2E+02 0.0026 30.4 11.5 133 91-235 19-170 (316)
118 PRK13341 recombination factor 56.9 86 0.0019 35.8 10.8 58 178-238 108-181 (725)
119 cd00561 CobA_CobO_BtuR ATP:cor 54.3 23 0.0005 31.9 4.8 50 169-218 84-139 (159)
120 PRK09376 rho transcription ter 53.5 17 0.00037 37.8 4.2 63 125-191 197-268 (416)
121 PRK12402 replication factor C 52.4 85 0.0018 31.8 9.4 60 178-237 124-196 (337)
122 PRK09087 hypothetical protein; 49.9 25 0.00054 33.8 4.6 56 182-239 90-167 (226)
123 smart00368 LRR_RI Leucine rich 49.9 12 0.00025 22.7 1.5 14 343-356 2-15 (28)
124 TIGR00678 holB DNA polymerase 49.7 40 0.00087 31.0 5.9 60 178-237 95-167 (188)
125 COG3899 Predicted ATPase [Gene 49.1 93 0.002 36.3 9.8 30 94-124 1-31 (849)
126 PLN03025 replication factor C 47.7 2.2E+02 0.0047 28.8 11.4 133 93-238 13-171 (319)
127 smart00367 LRR_CC Leucine-rich 46.7 9.8 0.00021 22.4 0.8 14 530-543 2-15 (26)
128 PRK05642 DNA replication initi 44.4 22 0.00048 34.3 3.3 58 182-239 100-180 (234)
129 PRK08691 DNA polymerase III su 44.0 1E+02 0.0023 34.8 8.7 60 178-237 118-190 (709)
130 PTZ00202 tuzin; Provisional 43.2 3.7E+02 0.008 28.9 11.8 146 87-237 256-433 (550)
131 PF14516 AAA_35: AAA-like doma 42.7 3.8E+02 0.0083 27.3 12.7 163 91-257 9-241 (331)
132 PRK06620 hypothetical protein; 40.1 50 0.0011 31.3 5.0 57 180-238 86-160 (214)
133 PRK05707 DNA polymerase III su 40.0 66 0.0014 32.9 6.1 76 179-255 107-203 (328)
134 PF00308 Bac_DnaA: Bacterial d 39.3 18 0.00038 34.6 1.7 68 171-239 90-180 (219)
135 PRK04195 replication factor C 38.3 1.7E+02 0.0037 31.7 9.3 134 92-238 13-173 (482)
136 PRK06645 DNA polymerase III su 37.9 46 0.001 36.2 4.8 62 177-238 126-200 (507)
137 PRK14961 DNA polymerase III su 37.7 1.8E+02 0.0039 30.1 9.1 133 92-237 15-190 (363)
138 PRK08727 hypothetical protein; 36.6 35 0.00075 32.9 3.3 59 181-239 95-176 (233)
139 PRK09112 DNA polymerase III su 36.1 61 0.0013 33.4 5.2 79 178-256 140-241 (351)
140 PRK14960 DNA polymerase III su 36.0 1.7E+02 0.0036 33.0 8.6 62 177-238 116-190 (702)
141 PRK14086 dnaA chromosomal repl 34.0 1.8E+02 0.0039 32.4 8.5 58 182-239 380-460 (617)
142 PRK12323 DNA polymerase III su 32.4 5.4E+02 0.012 29.1 11.8 61 177-237 122-195 (700)
143 TIGR02397 dnaX_nterm DNA polym 31.9 3.8E+02 0.0082 27.3 10.5 135 92-238 13-189 (355)
144 PRK14949 DNA polymerase III su 31.5 4.4E+02 0.0095 31.0 11.2 61 177-237 117-190 (944)
145 KOG3763 mRNA export factor TAP 30.0 24 0.00052 38.0 1.0 64 437-505 216-283 (585)
146 PRK14970 DNA polymerase III su 28.9 6.5E+02 0.014 25.8 12.3 135 92-238 16-180 (367)
147 PRK07994 DNA polymerase III su 28.4 2.1E+02 0.0046 32.2 8.1 61 177-237 117-190 (647)
148 TIGR00708 cobA cob(I)alamin ad 28.4 90 0.002 28.5 4.3 50 168-217 85-140 (173)
149 PRK05986 cob(I)alamin adenolsy 28.1 1.1E+02 0.0023 28.6 4.8 51 168-218 103-159 (191)
150 KOG3763 mRNA export factor TAP 26.5 26 0.00057 37.7 0.6 87 465-565 215-312 (585)
151 PF02463 SMC_N: RecF/RecN/SMC 26.4 38 0.00083 32.0 1.7 42 178-219 157-201 (220)
152 COG2109 BtuR ATP:corrinoid ade 25.6 1.1E+02 0.0024 28.3 4.4 49 170-218 112-166 (198)
153 PRK07414 cob(I)yrinic acid a,c 25.4 1.3E+02 0.0027 27.7 4.7 50 168-217 103-158 (178)
154 TIGR03420 DnaA_homol_Hda DnaA 25.2 58 0.0013 30.8 2.7 57 181-237 92-171 (226)
155 PRK07940 DNA polymerase III su 25.1 1.1E+02 0.0024 32.1 4.9 77 178-254 116-212 (394)
156 COG2256 MGS1 ATPase related to 25.1 3.6E+02 0.0077 28.3 8.2 58 176-236 101-174 (436)
157 PRK05896 DNA polymerase III su 24.3 2E+02 0.0043 32.1 6.8 59 179-237 119-190 (605)
158 PRK09162 hypoxanthine-guanine 23.9 99 0.0021 28.4 3.9 30 175-205 94-124 (181)
159 PRK08084 DNA replication initi 23.8 64 0.0014 31.1 2.7 59 181-239 99-181 (235)
160 TIGR02639 ClpA ATP-dependent C 23.4 4.2E+02 0.0092 30.4 9.6 21 93-114 182-202 (731)
161 PRK14957 DNA polymerase III su 23.0 9.3E+02 0.02 26.6 11.6 60 177-236 117-189 (546)
162 PRK14956 DNA polymerase III su 22.1 4E+02 0.0088 28.8 8.4 62 177-238 119-193 (484)
163 PF04665 Pox_A32: Poxvirus A32 22.0 1E+02 0.0023 29.8 3.7 12 179-190 98-109 (241)
164 PRK06964 DNA polymerase III su 21.8 1.5E+02 0.0033 30.4 5.1 77 178-254 131-224 (342)
165 PF02572 CobA_CobO_BtuR: ATP:c 21.5 1.6E+02 0.0035 26.8 4.6 51 168-218 84-140 (172)
166 PRK06871 DNA polymerase III su 20.4 3E+02 0.0066 28.0 6.8 76 178-253 106-201 (325)
167 PRK06305 DNA polymerase III su 20.3 8.9E+02 0.019 25.9 10.7 60 178-237 120-192 (451)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-57 Score=504.86 Aligned_cols=531 Identities=25% Similarity=0.345 Sum_probs=364.8
Q ss_pred ccchHHHHHHHHHHHHHHhhhhhHHhHhhhccccccccccc------cc--ccchhhhhHHHHHHHHHHHHHh---hccc
Q 007787 2 TLAYQNLERILKETNYLVRESEKVICTFIMSNIQQNGDQGC------SK--ELCDALVGLESKFTDIKQQLHQ---VQPR 70 (589)
Q Consensus 2 ~~~~~~v~~Wl~~l~~~ayd~ed~ld~~~~~~~~~~~~~~~------~~--~~~~~r~~~~~~i~~i~~~l~~---~~~~ 70 (589)
+...+.+..|.+.+++++|++||.++.|..+....+..... .+ ++...+++.+..+..+.+++.. ..+.
T Consensus 51 ~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~ 130 (889)
T KOG4658|consen 51 RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVES 130 (889)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHH
Confidence 34557788999999999999999999999877654321111 11 1112455555555555555544 2233
Q ss_pred cccccC----CC-CCccccc-cccCCCCCCccccchhhHHHHHHHHHcCCCCceEEEEEE--------------------
Q 007787 71 YNIDFS----LW-MGELKIM-CLLHLQRDNMMSLQDDAMVELLDQLIEGPLQLSVVAIID-------------------- 124 (589)
Q Consensus 71 ~~~~~~----~~-~~~~~~r-~~~~~~~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG-------------------- 124 (589)
++.... .. ..+...+ +.+...+.. ||.++. ++++++.|++++. .++||+|
T Consensus 131 l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~-~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v 206 (889)
T KOG4658|consen 131 LGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETM-LEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEV 206 (889)
T ss_pred hccccceecccccccchhhcccCCCCcccc-ccHHHH-HHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchh
Confidence 332221 11 1111122 444444555 999999 9999999998874 8999999
Q ss_pred --eeCCceEEEEEE--eCCHHHHHHHHHHHhCCCCccccccccCHHHHHHHHHHHcCCceEEEEEecCCChhhHHHHhhh
Q 007787 125 --SFILIVHAWVSF--DTDPGTMLDNILKYVMPQSAFREILYKDFEKRKTALHDYLKNKRYLIVLYDVFTNDVWDYLGEA 200 (589)
Q Consensus 125 --~F~~~~~~wv~v--~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~~~w~~l~~~ 200 (589)
+|| .+|||+| +|+..+|+++|+..++.... .++..+.++++..|.+.|++|||+|||||||+..+|+.++.+
T Consensus 207 ~~~Fd--~~iWV~VSk~f~~~~iq~~Il~~l~~~~~--~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~ 282 (889)
T KOG4658|consen 207 GNHFD--GVIWVVVSKEFTTRKIQQTILERLGLLDE--EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVP 282 (889)
T ss_pred cccCc--eEEEEEEcccccHHhHHHHHHHHhccCCc--ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCC
Confidence 899 9999999 99999999999999887332 023444579999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEecccCcE----------EecCCCChHHHHHhhccccCCCCCC---------------CCCCchhhhcc
Q 007787 201 LPDHQNGSRVLVILFDDEI----------FNLCILENEDMINLDSVPATPLRAT---------------YQERPLVCLYY 255 (589)
Q Consensus 201 l~~~~~gs~IivTTR~~~v----------~~l~~L~~~~~~~Lf~~~a~~~~~~---------------c~glPlai~~~ 255 (589)
+|...+||||++|||++.| +++.+|+++|||+||+++||..... |+|+|||++++
T Consensus 283 ~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~vi 362 (889)
T KOG4658|consen 283 FPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVL 362 (889)
T ss_pred CCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHH
Confidence 9999999999999999999 9999999999999999999987321 99999999999
Q ss_pred cc-----------hhHhhccchhhhhcc------CC---Cc-eecCCCCcchhhHhhhccccCCCeeechhhHHHHHHhh
Q 007787 256 GS-----------ESLAENMKLTWLIRK------RS---PL-FSIAQLPQRLKLCCLYLSACREGFEISTRQLNQLWIAE 314 (589)
Q Consensus 256 g~-----------~~~~~~~~~~~~~~~------~~---~l-lsy~~L~~~lk~cfl~~~~fp~~~~~~~~~L~~l~~~~ 314 (589)
|+ +++.+. ..+.+.. +. ++ +||++||.++|.||+|||+||+||.|..+.|+.+|+|+
T Consensus 363 G~~ma~K~t~~eW~~~~~~--l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaE 440 (889)
T KOG4658|consen 363 GGLLACKKTVQEWRRALNV--LKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAE 440 (889)
T ss_pred HHHhcCCCcHHHHHHHHcc--ccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhc
Confidence 99 334444 3333221 11 22 99999998899999999999999999999999999999
Q ss_pred CCCcc-----Ccc-------------------------------------------------------------------
Q 007787 315 GFIPE-----TAR------------------------------------------------------------------- 322 (589)
Q Consensus 315 ~~i~~-----~le------------------------------------------------------------------- 322 (589)
||+.. +++
T Consensus 441 Gfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~ 520 (889)
T KOG4658|consen 441 GFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVK 520 (889)
T ss_pred cCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcccccccc
Confidence 99961 211
Q ss_pred ---------------------------cEEEEcCCC--CccCCc-ccCCCCCCCEEEeecC-CccccchhhcCCCCccEE
Q 007787 323 ---------------------------KLLNLGTIV--LEEYPA-GINLLLLLKYLKLNIP-YLKHLPASLCNLLNLYTI 371 (589)
Q Consensus 323 ---------------------------r~L~L~~n~--l~~~p~-~~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L 371 (589)
+.|-+.+|. +..++. .|..+++||+|||++| .+.++|.+|+.|-+|++|
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 334445553 333333 2556888888888866 466888888888888888
Q ss_pred EecCCccccccccccccccCceeeec----CcccCCcccccCCCCcccccccccC--CCCchhhhhcCcc----------
Q 007787 372 DMPSSYVRCTPDSIGKMHELRHLNFR----TITLPAHPGKFCTSLENLNFISVLH--PSSCTRDILGRLP---------- 435 (589)
Q Consensus 372 ~L~~~~l~~lp~~~~~L~~L~~L~l~----~~~lp~~i~~~l~~L~~L~l~~~~~--~~~~~~~~l~~L~---------- 435 (589)
+++++.+..+|.++.+|.+|.+|++. ...+|.... .|++|++|.+..... ......+ +..|.
T Consensus 601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~-~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL-ELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITIS 678 (889)
T ss_pred cccCCCccccchHHHHHHhhheeccccccccccccchhh-hcccccEEEeeccccccchhhHHh-hhcccchhhheeecc
Confidence 88888888888888888888888887 122233333 577777777655431 2223333 32110
Q ss_pred -----------------------------------cCCCCCCeEEEeeCCCCC-------C--------CCcee-----c
Q 007787 436 -----------------------------------SEFELLESLKLVNELKIP-------S--------QLSSI-----V 460 (589)
Q Consensus 436 -----------------------------------~~l~~L~~L~l~~~~~lp-------~--------~L~~L-----~ 460 (589)
..+.+|+.|.+...+... . ++.++ .
T Consensus 679 s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 679 SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH 758 (889)
T ss_pred hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc
Confidence 234455555555422100 0 00000 1
Q ss_pred CCC----CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceee
Q 007787 461 LPE----YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLI 536 (589)
Q Consensus 461 lp~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~ 536 (589)
.|. ....++|+.|.+..|.....+++....+..+..+.+..+.+.+..+..+.++|+++-..|.. +++|+.+.
T Consensus 759 ~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~---~~~l~~~~ 835 (889)
T KOG4658|consen 759 MLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS---FLKLEELI 835 (889)
T ss_pred cccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC---ccchhhee
Confidence 111 23556777777777776666666666666666666656666665545556666666444433 23366666
Q ss_pred EeecCCCCCCc
Q 007787 537 INPCAHLKRLP 547 (589)
Q Consensus 537 L~~n~~l~~lp 547 (589)
+..||.++.+|
T Consensus 836 ve~~p~l~~~P 846 (889)
T KOG4658|consen 836 VEECPKLGKLP 846 (889)
T ss_pred hhcCcccccCc
Confidence 66666555444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-43 Score=413.04 Aligned_cols=209 Identities=19% Similarity=0.226 Sum_probs=157.7
Q ss_pred CCCCccccchhhHHHHHHHHHcCCCCceEEEEEE-------------------eeCCceEEEEE-----Ee---C-----
Q 007787 91 QRDNMMSLQDDAMVELLDQLIEGPLQLSVVAIID-------------------SFILIVHAWVS-----FD---T----- 138 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG-------------------~F~~~~~~wv~-----v~---~----- 138 (589)
+.+++|||+++ .+++.++|..+.++++||+||| +|+ ..+|+. +. +
T Consensus 182 ~~~~~vG~~~~-l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~--g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 182 DFEDFVGIEDH-IAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ--SSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccccchHHH-HHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC--eEEEeeccccccchhhcccccc
Confidence 45679999999 9999999976667899999999 788 877763 11 1
Q ss_pred ---C-HHHHHHHHHHHhCCCCccccccccCHHHHHHHHHHHcCCceEEEEEecCCChhhHHHHhhhcCCCCCCcEEEEec
Q 007787 139 ---D-PGTMLDNILKYVMPQSAFREILYKDFEKRKTALHDYLKNKRYLIVLYDVFTNDVWDYLGEALPDHQNGSRVLVIL 214 (589)
Q Consensus 139 ---~-~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~~~w~~l~~~l~~~~~gs~IivTT 214 (589)
+ ...++++++.++..... ..... ...++++|++||+||||||||+...|+.+.....+.++||+|||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEe
Confidence 1 23456667766654332 11111 2467888999999999999999999999998887778999999999
Q ss_pred ccCcE---------EecCCCChHHHHHhhccccCCCCCC--------------CCCCchhhhcccc------hhHhhccc
Q 007787 215 FDDEI---------FNLCILENEDMINLDSVPATPLRAT--------------YQERPLVCLYYGS------ESLAENMK 265 (589)
Q Consensus 215 R~~~v---------~~l~~L~~~~~~~Lf~~~a~~~~~~--------------c~glPlai~~~g~------~~~~~~~~ 265 (589)
|++.+ |+++.|++++||+||+++||+...+ |+|+|||++++|+ ...|+.
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~-- 409 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMD-- 409 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHH--
Confidence 99866 9999999999999999999976532 9999999999999 222333
Q ss_pred hhhhhcc---CC---Cc-eecCCCCc-chhhHhhhccccCCCeeechhhHHHHHHhh
Q 007787 266 LTWLIRK---RS---PL-FSIAQLPQ-RLKLCCLYLSACREGFEISTRQLNQLWIAE 314 (589)
Q Consensus 266 ~~~~~~~---~~---~l-lsy~~L~~-~lk~cfl~~~~fp~~~~~~~~~L~~l~~~~ 314 (589)
....+.. .. .+ +||++|+. ..|.||+++|+|+.+..+ ..+..|++.
T Consensus 410 ~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~ 463 (1153)
T PLN03210 410 MLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLAN 463 (1153)
T ss_pred HHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHh
Confidence 2222222 11 22 99999987 599999999999887533 234444444
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=2.5e-30 Score=260.59 Aligned_cols=215 Identities=32% Similarity=0.473 Sum_probs=168.0
Q ss_pred cchhhHHHHHHHHHcCCCCceEEEEEE---------------------eeCCceEEEEEE--eCCHHHHHHHHHHHhCCC
Q 007787 98 LQDDAMVELLDQLIEGPLQLSVVAIID---------------------SFILIVHAWVSF--DTDPGTMLDNILKYVMPQ 154 (589)
Q Consensus 98 r~~~~~~~i~~~L~~~~~~~~vi~IvG---------------------~F~~~~~~wv~v--~~~~~~i~~~il~~l~~~ 154 (589)
||.+ +++|.++|.....+.++|+|+| +|+ .++||.+ ..+...++++|+.++...
T Consensus 1 re~~-~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~--~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKE-IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD--GVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHH-HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT--EEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHH-HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc--ccccccccccccccccccccccccccc
Confidence 6788 9999999998667899999999 899 9999999 778899999999999886
Q ss_pred CccccccccCHHHHHHHHHHHcCCceEEEEEecCCChhhHHHHhhhcCCCCCCcEEEEecccCcE----------EecCC
Q 007787 155 SAFREILYKDFEKRKTALHDYLKNKRYLIVLYDVFTNDVWDYLGEALPDHQNGSRVLVILFDDEI----------FNLCI 224 (589)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~~~w~~l~~~l~~~~~gs~IivTTR~~~v----------~~l~~ 224 (589)
.... ....+.+.....+++.|+++++||||||||+...|+.+...++....||+||||||+..| |++++
T Consensus 78 ~~~~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 78 DSSI-SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp -STS-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccc-ccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4200 134677889999999999999999999999999999999988888889999999999876 99999
Q ss_pred CChHHHHHhhccccCCCC-------CC--------CCCCchhhhcccc-----------hhHhhccchhhhhccC----C
Q 007787 225 LENEDMINLDSVPATPLR-------AT--------YQERPLVCLYYGS-----------ESLAENMKLTWLIRKR----S 274 (589)
Q Consensus 225 L~~~~~~~Lf~~~a~~~~-------~~--------c~glPlai~~~g~-----------~~~~~~~~~~~~~~~~----~ 274 (589)
|++++|++||++.++... .. |+|+|||++++|+ +.+.+. ..+..... .
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~--l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEE--LENSLRESRDYDR 234 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHH--HHHCHTCSSGSCH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 999999999999998765 11 9999999999999 112222 12222111 1
Q ss_pred Cc-----eecCCCCcchhhHhhhccccCCCeeechhhHHHHHHhhCCCc
Q 007787 275 PL-----FSIAQLPQRLKLCCLYLSACREGFEISTRQLNQLWIAEGFIP 318 (589)
Q Consensus 275 ~l-----lsy~~L~~~lk~cfl~~~~fp~~~~~~~~~L~~l~~~~~~i~ 318 (589)
.+ +||+.||+++|.||+||++||+++.++.+.|+.+|.++|+|.
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 11 999999999999999999999999999999999999999986
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=1.7e-20 Score=220.15 Aligned_cols=236 Identities=22% Similarity=0.260 Sum_probs=133.3
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCcc-ccchhhcCCCCccEEEecCCccc-cccccccccccCceeeec--
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLK-HLPASLCNLLNLYTIDMPSSYVR-CTPDSIGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~-- 397 (589)
|+|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|+++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 44555555544 44555555555555555555544 44555555555555555555432 445555555555555554
Q ss_pred --CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC---CCCC------CCcee-------
Q 007787 398 --TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL---KIPS------QLSSI------- 459 (589)
Q Consensus 398 --~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~---~lp~------~L~~L------- 459 (589)
...+|..++ .+++|++|++..+...+..+.. +. .+++|++|++++|. .+|. +|+.|
T Consensus 247 ~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~-l~----~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 247 NLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPS-IF----SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred eeccccChhHh-CCCCCCEEECcCCeeeccCchh-Hh----hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 223444455 5555555555444444444444 44 45566666666543 2331 33333
Q ss_pred --cCCC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC-----------CccccC
Q 007787 460 --VLPE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL-----------KEWIVE 525 (589)
Q Consensus 460 --~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L-----------~~l~~~ 525 (589)
.+|. +..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+.. +.....+++| ..+|..
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~-p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI-PEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC-ChhHhCcCCCCEEECcCCEecccCCHH
Confidence 2344 555666666666666666666666666666666666666654432 1111122223 244556
Q ss_pred cccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 526 FEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 526 ~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 6778888888888888877778778888888888888876
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=1.6e-20 Score=220.34 Aligned_cols=236 Identities=23% Similarity=0.259 Sum_probs=146.9
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCcc-ccchhhcCCCCccEEEecCCcc-ccccccccccccCceeeec--
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLK-HLPASLCNLLNLYTIDMPSSYV-RCTPDSIGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l-~~lp~~~~~L~~L~~L~l~-- 397 (589)
++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|+++
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 56777777666 56666777777777777777666 5666667777777777777755 3556667777777777766
Q ss_pred --CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC---CCC------CCCcee-------
Q 007787 398 --TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL---KIP------SQLSSI------- 459 (589)
Q Consensus 398 --~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~---~lp------~~L~~L------- 459 (589)
...+|..+. .+++|++|++.++...+..+.. +. .+++|+.|++++|. .+| ++|+.|
T Consensus 271 ~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~-~~----~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 271 KLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPEL-VI----QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred eeeccCchhHh-hccCcCEEECcCCeeccCCChh-Hc----CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 234555666 6677777776655555555555 55 56666666666643 223 244444
Q ss_pred --cCCC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC-----------CccccC
Q 007787 460 --VLPE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL-----------KEWIVE 525 (589)
Q Consensus 460 --~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L-----------~~l~~~ 525 (589)
.+|. ++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.. +.....+++| ..+|..
T Consensus 345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI-PKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC-CHHHhCCCCCCEEECcCCEeeeECChh
Confidence 3444 566667777777777766666666666666777777666655432 2222334444 233445
Q ss_pred cccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 526 FEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 526 ~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 5666777777777777666666666667777777777665
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.6e-22 Score=205.01 Aligned_cols=273 Identities=20% Similarity=0.215 Sum_probs=175.2
Q ss_pred chhhHHHHHHhhCCCc------cCcc--cEEEEcCCCCc--cCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEE
Q 007787 303 STRQLNQLWIAEGFIP------ETAR--KLLNLGTIVLE--EYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTID 372 (589)
Q Consensus 303 ~~~~L~~l~~~~~~i~------~~le--r~L~L~~n~l~--~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 372 (589)
.+.+|.++-+++|.+. .++. |.+++..|++. .+|..+..|..|..||||+|++++.|..+..-+++-+|+
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 3456667777766554 1111 56777777766 677777777777777777777777777777777777777
Q ss_pred ecCCcccccccc-ccccccCceeeec---CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEee
Q 007787 373 MPSSYVRCTPDS-IGKMHELRHLNFR---TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVN 448 (589)
Q Consensus 373 L~~~~l~~lp~~-~~~L~~L~~L~l~---~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~ 448 (589)
|++|+|..+|.. +.+|+.|-+|+|| ...+|+.+. .|.+||+|.++++...... +..|| .|++|+.|++++
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R-RL~~LqtL~Ls~NPL~hfQ----LrQLP-smtsL~vLhms~ 206 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR-RLSMLQTLKLSNNPLNHFQ----LRQLP-SMTSLSVLHMSN 206 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHH-HHhhhhhhhcCCChhhHHH----HhcCc-cchhhhhhhccc
Confidence 777777777765 4567777777777 556677777 7777777776555432222 33333 556666666666
Q ss_pred CC----CCCCCCcee--------------cCCC-CCCCCCccEEEEEeecCCC----------------------CCCCC
Q 007787 449 EL----KIPSQLSSI--------------VLPE-YQFPPSLIELSLANTELRD----------------------DPMPK 487 (589)
Q Consensus 449 ~~----~lp~~L~~L--------------~lp~-~~~l~~L~~L~L~~n~l~~----------------------~~~~~ 487 (589)
.. -+|++|..| .+|+ +..+++|+.|+|++|+++. ..|+.
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH
Confidence 32 234321111 4444 5566666666666666533 24455
Q ss_pred cccccccceeEEecCcccCceeeEecCCCCCC----------CccccCcccccccceeeEeecCCCCCCccccccCCCCC
Q 007787 488 PKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL----------KEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLT 557 (589)
Q Consensus 488 l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L----------~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~ 557 (589)
+++|+.|+.|.+.+|.++-..++...+.+..| +-.|..++.++.|+.|.|+.|.+. .+|.++.-|+.|+
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK 365 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence 56666666666666665444333333333333 455888899999999999999886 4899999999999
Q ss_pred EEEEeCCcHHHHHHHhh---ccCCceeee
Q 007787 558 KLELWWPRFELRERLRK---FENRELFLW 583 (589)
Q Consensus 558 ~L~l~~~~~~~~~~~~~---~~g~~~~~~ 583 (589)
.|++..|| ++.-.-++ ....+||.|
T Consensus 366 vLDlreNp-nLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 366 VLDLRENP-NLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred eeeccCCc-CccCCCCcchhhhcceeeec
Confidence 99999998 44433322 223455544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=4e-19 Score=173.73 Aligned_cols=251 Identities=24% Similarity=0.223 Sum_probs=137.2
Q ss_pred chhhHHHHHHhhCCCc-------cCcc--cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEe
Q 007787 303 STRQLNQLWIAEGFIP-------ETAR--KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDM 373 (589)
Q Consensus 303 ~~~~L~~l~~~~~~i~-------~~le--r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L 373 (589)
.+..|..+.+++++|. +.+. .+|||.+|++.++|+.++.+.+|.+||+|+|.|+.+|.++++| +|+.|-+
T Consensus 226 gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 226 GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLAL 304 (565)
T ss_pred ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhh
Confidence 4566677777777765 1111 4577777777777777777777777777777777777777777 7777777
Q ss_pred cCCccccccccccccc---cCceeee-------c--------CcccCCc----ccccCCCCcccccccccCCCCchhhh-
Q 007787 374 PSSYVRCTPDSIGKMH---ELRHLNF-------R--------TITLPAH----PGKFCTSLENLNFISVLHPSSCTRDI- 430 (589)
Q Consensus 374 ~~~~l~~lp~~~~~L~---~L~~L~l-------~--------~~~lp~~----i~~~l~~L~~L~l~~~~~~~~~~~~~- 430 (589)
.||.+..+-.++-+.. -|++|.= + ....|.+ +. .+.+.+.|.+...+. ...|.+.
T Consensus 305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~-~~i~tkiL~~s~~ql-t~VPdEVf 382 (565)
T KOG0472|consen 305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY-AIITTKILDVSDKQL-TLVPDEVF 382 (565)
T ss_pred cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh-hhhhhhhhccccccc-ccCCHHHH
Confidence 7776654433221110 1111111 0 0011111 11 233344444332221 1111110
Q ss_pred -----------------hcCcccCCCCCC----eEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCC
Q 007787 431 -----------------LGRLPSEFELLE----SLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPK 487 (589)
Q Consensus 431 -----------------l~~L~~~l~~L~----~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~ 487 (589)
+..+|..+..++ .+.++.+. + .+++ ++.+++|..|+|++|.+ ...|..
T Consensus 383 ea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~-i-------sfv~~~l~~l~kLt~L~L~NN~L-n~LP~e 453 (565)
T KOG0472|consen 383 EAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK-I-------SFVPLELSQLQKLTFLDLSNNLL-NDLPEE 453 (565)
T ss_pred HHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc-c-------ccchHHHHhhhcceeeecccchh-hhcchh
Confidence 111112222221 12233221 0 2222 56667777777777765 455556
Q ss_pred cccccccceeEEecCcccCceeeE-ec-------CCCCCCCcccc-CcccccccceeeEeecCCCCCCccccccCCCCCE
Q 007787 488 PKKLLHLQVLKLKKNSFIGRKLIC-RF-------GCFPSLKEWIV-EFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTK 558 (589)
Q Consensus 488 l~~l~~L~~L~L~~n~~~~~~~~~-~~-------~~f~~L~~l~~-~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~ 558 (589)
++.+..|+.|+++.|+|....-.. .. ..=-++.+++. .++.|.+|.+|++.+|.+. .+|+.++++++|++
T Consensus 454 ~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH 532 (565)
T ss_pred hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence 666767777777776553221000 00 00001133333 4889999999999999874 68889999999999
Q ss_pred EEEeCCcH
Q 007787 559 LELWWPRF 566 (589)
Q Consensus 559 L~l~~~~~ 566 (589)
|+++|||.
T Consensus 533 LeL~gNpf 540 (565)
T KOG0472|consen 533 LELDGNPF 540 (565)
T ss_pred EEecCCcc
Confidence 99999993
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=2.4e-19 Score=175.23 Aligned_cols=92 Identities=28% Similarity=0.255 Sum_probs=68.7
Q ss_pred cCCCCCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEee
Q 007787 460 VLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINP 539 (589)
Q Consensus 460 ~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~ 539 (589)
.+|+|..++.|.+|++..|++.-.+......+++|..|++..|++ ++.|.+++-+.+|++|++++
T Consensus 220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl---------------ke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL---------------KEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc---------------ccCchHHHHhhhhhhhcccC
Confidence 455566666677777777766333333344677777777766666 55688999999999999999
Q ss_pred cCCCCCCccccccCCCCCEEEEeCCcHHH
Q 007787 540 CAHLKRLPEDLWRVKSLTKLELWWPRFEL 568 (589)
Q Consensus 540 n~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 568 (589)
|.+. .+|..++++ .|+.|.+.|||..-
T Consensus 285 N~is-~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 285 NDIS-SLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred Cccc-cCCcccccc-eeeehhhcCCchHH
Confidence 9985 578889999 99999999999533
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.68 E-value=1.3e-18 Score=178.20 Aligned_cols=223 Identities=19% Similarity=0.284 Sum_probs=172.0
Q ss_pred cEEEEcCCCCc--cCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---
Q 007787 323 KLLNLGTIVLE--EYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~--~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~--- 397 (589)
|-.|+++|.++ .+|..+..|++++.|.|..+++..+|+.++.|.+|++|.+++|++..+--.++.|+.||.+.+.
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc
Confidence 55899999998 8999999999999999999999999999999999999999999998888888899999999887
Q ss_pred --CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEE
Q 007787 398 --TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIEL 473 (589)
Q Consensus 398 --~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L 473 (589)
...+|..|. .|..|.+|+++.+.. ...|.. +. .-+++-.|+||+|. ++ .+|. +-++..|-.|
T Consensus 90 LKnsGiP~diF-~l~dLt~lDLShNqL-~EvP~~-LE----~AKn~iVLNLS~N~-----Ie--tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 90 LKNSGIPTDIF-RLKDLTILDLSHNQL-REVPTN-LE----YAKNSIVLNLSYNN-----IE--TIPNSLFINLTDLLFL 155 (1255)
T ss_pred cccCCCCchhc-ccccceeeecchhhh-hhcchh-hh----hhcCcEEEEcccCc-----cc--cCCchHHHhhHhHhhh
Confidence 567899999 999999999777654 456666 76 67889999999974 33 6676 6677788888
Q ss_pred EEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC---------------CccccCcccccccceeeEe
Q 007787 474 SLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL---------------KEWIVEFEAIPKLESLIIN 538 (589)
Q Consensus 474 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L---------------~~l~~~~~~l~~L~~L~L~ 538 (589)
+|++|++ ...|+.+..|.+|++|.|++|.+.... ...+|++ ..+|..+..+.+|..++++
T Consensus 156 DLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQ----LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 156 DLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQ----LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred ccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHH----HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 8888887 455666777888888888777653221 2222222 3456666666677777777
Q ss_pred ecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 539 PCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 539 ~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
.|.+ ..+|..+..+++|+.|++++|.
T Consensus 231 ~N~L-p~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 231 ENNL-PIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred ccCC-CcchHHHhhhhhhheeccCcCc
Confidence 6654 3456666666777777776654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=3.4e-18 Score=174.31 Aligned_cols=224 Identities=21% Similarity=0.195 Sum_probs=97.2
Q ss_pred EEEcCCCCccCCc-ccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCcccccccc-ccccccCceeeecCc--
Q 007787 325 LNLGTIVLEEYPA-GINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFRTI-- 399 (589)
Q Consensus 325 L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~-- 399 (589)
|.|+.|+++.+|. .|.+|++|+.|+|..|.|... --.+.+|++|+.|.|..|.+..+-.+ |..|.++++|+|..+
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 4444444444433 222344444444444444422 12334444444444444444444333 445555555555522
Q ss_pred -ccCC-cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEE
Q 007787 400 -TLPA-HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSL 475 (589)
Q Consensus 400 -~lp~-~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L 475 (589)
.+.+ ++. +|++|+.|+++.+......+.. +. ..++|+.|+|++|. ++ ++++ |..++.|+.|.|
T Consensus 282 ~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~-Ws----ftqkL~~LdLs~N~-----i~--~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 282 QAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDS-WS----FTQKLKELDLSSNR-----IT--RLDEGSFRVLSQLEELNL 348 (873)
T ss_pred hhhhccccc-ccchhhhhccchhhhheeecch-hh----hcccceeEeccccc-----cc--cCChhHHHHHHHhhhhcc
Confidence 1111 234 5666666665555443333333 33 45566666666653 12 3333 334444444444
Q ss_pred EeecCCCCCCCCcccccccceeEEecCcccCceee--EecCCCCCC----------Ccccc-CcccccccceeeEeecCC
Q 007787 476 ANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLI--CRFGCFPSL----------KEWIV-EFEAIPKLESLIINPCAH 542 (589)
Q Consensus 476 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~--~~~~~f~~L----------~~l~~-~~~~l~~L~~L~L~~n~~ 542 (589)
+.|++....-..|..+.+|+.|+|++|.+....-- ....++++| +.+|. .+..+++|++|+|.+|++
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 44444333333344444444444444443221100 000111111 11121 344555566666665555
Q ss_pred CCCCccccccCCCCCEEEEe
Q 007787 543 LKRLPEDLWRVKSLTKLELW 562 (589)
Q Consensus 543 l~~lp~~l~~l~~L~~L~l~ 562 (589)
...-|..|..+ .|++|.+.
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eeecccccccc-hhhhhhhc
Confidence 44445555555 55555443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=8.6e-17 Score=164.17 Aligned_cols=223 Identities=18% Similarity=0.147 Sum_probs=125.0
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCcccccc-ccccccccCceeeec---
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTP-DSIGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~--- 397 (589)
+.||+++|.+. .-+..|.++++|+.+++..|.++.+|...+...+|+.|+|.+|.|.++. +.+.-++.|+.|||+
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 55777777776 4455566777777777777777777765555566777777777665552 335556666666666
Q ss_pred CcccCCc-ccccCCCCcccccccccC------------------------CCCchhhhhcCcccCCCCCCeEEEeeCC--
Q 007787 398 TITLPAH-PGKFCTSLENLNFISVLH------------------------PSSCTRDILGRLPSEFELLESLKLVNEL-- 450 (589)
Q Consensus 398 ~~~lp~~-i~~~l~~L~~L~l~~~~~------------------------~~~~~~~~l~~L~~~l~~L~~L~l~~~~-- 450 (589)
...+|.. +. .-.+++.|++.++.. +.--+.. +. ++++|+.|+|..|.
T Consensus 161 is~i~~~sfp-~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~-Fk----~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 161 ISEIPKPSFP-AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRS-FK----RLPKLESLDLNRNRIR 234 (873)
T ss_pred hhcccCCCCC-CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHH-hh----hcchhhhhhcccccee
Confidence 2222221 11 223444444444333 2222222 32 45566666665532
Q ss_pred C-----CC--CCCcee--------cCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEec
Q 007787 451 K-----IP--SQLSSI--------VLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRF 513 (589)
Q Consensus 451 ~-----lp--~~L~~L--------~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 513 (589)
. +. ++|+.| .+.+ |..+.++++|+|+.|++....-.++-+|..|+.|++++|.+....
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih----- 309 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH----- 309 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee-----
Confidence 0 00 122222 3333 555666666666666666555566666667777777666664333
Q ss_pred CCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 514 GCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 514 ~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+......++|+.|+|++|.+..--+..|..|..|++|.|++|.
T Consensus 310 ---------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 310 ---------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred ---------cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 2233345677777777777654444456666677777777665
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.4e-17 Score=145.03 Aligned_cols=176 Identities=23% Similarity=0.305 Sum_probs=132.0
Q ss_pred ccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---CcccCCcccccCCCCcc
Q 007787 338 GINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TITLPAHPGKFCTSLEN 414 (589)
Q Consensus 338 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~lp~~i~~~l~~L~~ 414 (589)
.+..+.+.+.|-||+|+++.+|+.|..|.+|+.|++++|+++++|..++.|++|++|+++ ...+|.+++ .++.|+.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg-s~p~lev 106 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG-SFPALEV 106 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC-CCchhhh
Confidence 356788899999999999999999999999999999999999999999999999999998 667888888 8888888
Q ss_pred cccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeecCCCCCCCCcccccc
Q 007787 415 LNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTELRDDPMPKPKKLLH 493 (589)
Q Consensus 415 L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 493 (589)
|++..++.... .+|. |..+..|+-|+|++|.+ +..|+..+++.+
T Consensus 107 ldltynnl~e~----------------------------------~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~ 151 (264)
T KOG0617|consen 107 LDLTYNNLNEN----------------------------------SLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTN 151 (264)
T ss_pred hhccccccccc----------------------------------cCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcc
Confidence 88776664111 4555 55666677777777776 456666777777
Q ss_pred cceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCC---CCEEEEeCCc
Q 007787 494 LQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKS---LTKLELWWPR 565 (589)
Q Consensus 494 L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~---L~~L~l~~~~ 565 (589)
|+.|.+..|.+. ++|.+++.+..|+.|.+.+|.+ ..+|+.++++.- =+.+.+.+||
T Consensus 152 lqil~lrdndll---------------~lpkeig~lt~lrelhiqgnrl-~vlppel~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 152 LQILSLRDNDLL---------------SLPKEIGDLTRLRELHIQGNRL-TVLPPELANLDLVGNKQVMRMEENP 210 (264)
T ss_pred eeEEeeccCchh---------------hCcHHHHHHHHHHHHhccccee-eecChhhhhhhhhhhHHHHhhhhCC
Confidence 777777766652 2356777777788888887776 345655554422 2334455555
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=5.2e-17 Score=158.90 Aligned_cols=221 Identities=19% Similarity=0.227 Sum_probs=163.8
Q ss_pred EEEcCCCCccCCc-ccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecC-Ccccccccc-ccccccCceeeec---
Q 007787 325 LNLGTIVLEEYPA-GINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPS-SYVRCTPDS-IGKMHELRHLNFR--- 397 (589)
Q Consensus 325 L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~-~~l~~lp~~-~~~L~~L~~L~l~--- 397 (589)
++|..|.|+.+|+ +|+.+++||.||||+|.|+.| |.++.+|.+|..|-+.+ |+|+.+|.+ |++|..|+.|.+.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 8999999997775 888999999999999999955 77889999988887766 799999987 8899999999888
Q ss_pred Cccc-CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--------------------------
Q 007787 398 TITL-PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL-------------------------- 450 (589)
Q Consensus 398 ~~~l-p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~-------------------------- 450 (589)
...+ ...+. .|++|..|.+.++... ......+. .+..++.+++..|.
T Consensus 152 i~Cir~~al~-dL~~l~lLslyDn~~q-~i~~~tf~----~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 152 INCIRQDALR-DLPSLSLLSLYDNKIQ-SICKGTFQ----GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcchhHHHHH-Hhhhcchhcccchhhh-hhcccccc----chhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 2223 33455 7777777776665430 11110011 22223333222211
Q ss_pred CCC------------C-----CCcee------------cCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEE
Q 007787 451 KIP------------S-----QLSSI------------VLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKL 499 (589)
Q Consensus 451 ~lp------------~-----~L~~L------------~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 499 (589)
..| + .++.+ ..|. |..+++|++|+|++|+++.....+|.++..++.|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 111 0 11111 3454 788999999999999999999999999999999999
Q ss_pred ecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 500 KKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 500 ~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
..|++.... ...+..+..|+.|+|.+|++....|..|..+.+|.+|++-.||
T Consensus 306 ~~N~l~~v~--------------~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 306 TRNKLEFVS--------------SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred CcchHHHHH--------------HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 999875432 1135578899999999999988889889999999999999987
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=6.3e-17 Score=141.06 Aligned_cols=152 Identities=24% Similarity=0.284 Sum_probs=132.5
Q ss_pred EEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec-----Cc
Q 007787 325 LNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR-----TI 399 (589)
Q Consensus 325 L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~-----~~ 399 (589)
|.|++|+++.+|+.+..+.+|+.|++++|+|+++|.+|+.++.|+.|+++-|.+..+|.+|+.++.|+.||+. ..
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998 56
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEee
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANT 478 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n 478 (589)
.+|..+. .++.|+.|++.++.. ...|.+ ++ ++++|+.|.+..|+.+ ++|. ++.+..|+.|++.+|
T Consensus 118 ~lpgnff-~m~tlralyl~dndf-e~lp~d-vg----~lt~lqil~lrdndll-------~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 118 SLPGNFF-YMTTLRALYLGDNDF-EILPPD-VG----KLTNLQILSLRDNDLL-------SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cCCcchh-HHHHHHHHHhcCCCc-ccCChh-hh----hhcceeEEeeccCchh-------hCcHHHHHHHHHHHHhcccc
Confidence 7888888 899999999777665 456677 87 7889999988887644 7888 888899999999999
Q ss_pred cCCCCCCCCcccc
Q 007787 479 ELRDDPMPKPKKL 491 (589)
Q Consensus 479 ~l~~~~~~~l~~l 491 (589)
+++ ..|+.++++
T Consensus 184 rl~-vlppel~~l 195 (264)
T KOG0617|consen 184 RLT-VLPPELANL 195 (264)
T ss_pred eee-ecChhhhhh
Confidence 874 455555554
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.53 E-value=4.1e-14 Score=167.22 Aligned_cols=223 Identities=23% Similarity=0.282 Sum_probs=141.4
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCC-ccccccccccccccCceeeec----
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSS-YVRCTPDSIGKMHELRHLNFR---- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~~~~L~~L~~L~l~---- 397 (589)
|.|++.++.+..+|..+ ...+|+.|++++|.+..+|..+..+++|+.|+|++| .+..+| .++.+++|+.|+++
T Consensus 592 r~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 592 RLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSS 669 (1153)
T ss_pred EEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCC
Confidence 56666666666666655 356677777777666666666666677777777665 455555 35666677777665
Q ss_pred CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEe
Q 007787 398 TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLAN 477 (589)
Q Consensus 398 ~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~ 477 (589)
...+|..++ .+++|+.|++.+|+.....|.. + .+++|+.|+++++. .++ .+|. ...+|+.|++++
T Consensus 670 L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~-i-----~l~sL~~L~Lsgc~----~L~--~~p~--~~~nL~~L~L~~ 734 (1153)
T PLN03210 670 LVELPSSIQ-YLNKLEDLDMSRCENLEILPTG-I-----NLKSLYRLNLSGCS----RLK--SFPD--ISTNISWLDLDE 734 (1153)
T ss_pred ccccchhhh-ccCCCCEEeCCCCCCcCccCCc-C-----CCCCCCEEeCCCCC----Ccc--cccc--ccCCcCeeecCC
Confidence 345566666 6667777766665553333333 2 35666666666542 111 2332 345788888888
Q ss_pred ecCCCCCCCCcccccccceeEEecCcc---cCcee--------------eEecCCCCCCCccccCcccccccceeeEeec
Q 007787 478 TELRDDPMPKPKKLLHLQVLKLKKNSF---IGRKL--------------ICRFGCFPSLKEWIVEFEAIPKLESLIINPC 540 (589)
Q Consensus 478 n~l~~~~~~~l~~l~~L~~L~L~~n~~---~~~~~--------------~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n 540 (589)
|.+. ..|..+ .+++|+.|.+.++.. .+... .....+.+.+.++|..++++++|+.|+|++|
T Consensus 735 n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 735 TAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred Cccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 8874 344433 567777777754221 00000 0011222334567888899999999999999
Q ss_pred CCCCCCccccccCCCCCEEEEeCCc
Q 007787 541 AHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 541 ~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
..++.+|..+ .+++|+.|++++|.
T Consensus 813 ~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 813 INLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred CCcCeeCCCC-CccccCEEECCCCC
Confidence 9888888765 68999999999986
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=6.8e-16 Score=165.60 Aligned_cols=213 Identities=23% Similarity=0.281 Sum_probs=152.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Cc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~ 399 (589)
..++++.|.++.+|+.++.+.+|+.|+..+|.+..+|..+...++|+.|.+..|.+..+|....+++.|++|+|. ..
T Consensus 244 ~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 244 QYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred eeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc
Confidence 457777777777777777777777777777777777777777777777777777777777777777777777776 22
Q ss_pred ccCCccc-------------------------ccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCC
Q 007787 400 TLPAHPG-------------------------KFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPS 454 (589)
Q Consensus 400 ~lp~~i~-------------------------~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~ 454 (589)
.+|+.+. +.+..|+.|++.++........- +. .+.+|+.|+|++|.
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~----~~~hLKVLhLsyNr---- 394 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LV----NFKHLKVLHLSYNR---- 394 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hc----cccceeeeeecccc----
Confidence 2222110 13455666666666554444444 54 67888888888862
Q ss_pred CCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCccccccc
Q 007787 455 QLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKL 532 (589)
Q Consensus 455 ~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L 532 (589)
|+ .+|+ +.++..|+.|+|++|+++ .+|..+..++.|++|...+|++.. +| ++..++.|
T Consensus 395 -L~--~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~---------------fP-e~~~l~qL 454 (1081)
T KOG0618|consen 395 -LN--SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS---------------FP-ELAQLPQL 454 (1081)
T ss_pred -cc--cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee---------------ch-hhhhcCcc
Confidence 33 6777 788888888899998874 455778888888888888887732 24 67789999
Q ss_pred ceeeEeecCCCCC-CccccccCCCCCEEEEeCCc
Q 007787 533 ESLIINPCAHLKR-LPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 533 ~~L~L~~n~~l~~-lp~~l~~l~~L~~L~l~~~~ 565 (589)
+.++++.|.+... +|... ..|.|++|+++||+
T Consensus 455 ~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred eEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 9999999987543 34322 23899999999998
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=1.5e-15 Score=162.96 Aligned_cols=100 Identities=24% Similarity=0.387 Sum_probs=81.8
Q ss_pred HHHHHHhhCCCc-cCcc--------cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCc
Q 007787 307 LNQLWIAEGFIP-ETAR--------KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSY 377 (589)
Q Consensus 307 L~~l~~~~~~i~-~~le--------r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 377 (589)
++.+.+..|++- ..++ +.||+++|.+...|..+..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR 102 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch
Confidence 566666665543 1122 5699999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCceeeec---CcccCCccc
Q 007787 378 VRCTPDSIGKMHELRHLNFR---TITLPAHPG 406 (589)
Q Consensus 378 l~~lp~~~~~L~~L~~L~l~---~~~lp~~i~ 406 (589)
+..+|.++..+.+|++|+++ ...+|.-+.
T Consensus 103 l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~ 134 (1081)
T KOG0618|consen 103 LQSLPASISELKNLQYLDLSFNHFGPIPLVIE 134 (1081)
T ss_pred hhcCchhHHhhhcccccccchhccCCCchhHH
Confidence 99999999999999999998 344444333
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=3.5e-13 Score=148.92 Aligned_cols=35 Identities=31% Similarity=0.232 Sum_probs=29.1
Q ss_pred cccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 530 PKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 530 ~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
.+|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 46788888888864 688888889999999999987
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=1.5e-13 Score=152.56 Aligned_cols=204 Identities=19% Similarity=0.246 Sum_probs=103.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Cc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~ 399 (589)
+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|+++ ..
T Consensus 202 ~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 202 TTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC
Confidence 345555555555555443 355555555555555554332 245555555555555554442 345555555 22
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCC----CCCcee--------cCCC-C
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIP----SQLSSI--------VLPE-Y 464 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp----~~L~~L--------~lp~-~ 464 (589)
.+|..+. ++|+.|++.+|+.. ..+.. + .++|+.|++++|. .+| ++|+.| .+|. +
T Consensus 276 ~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~-l------p~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l 344 (754)
T PRK15370 276 CLPENLP---EELRYLSVYDNSIR-TLPAH-L------PSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL 344 (754)
T ss_pred ccccccC---CCCcEEECCCCccc-cCccc-c------hhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh
Confidence 3333322 24555554443321 11111 1 1234444444432 111 122222 3333 2
Q ss_pred CCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCC
Q 007787 465 QFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLK 544 (589)
Q Consensus 465 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~ 544 (589)
+++|+.|++++|.+.. +|..+ .++|+.|+|++|.+.. +|..+ .++|+.|++++|.+.
T Consensus 345 --~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~---------------LP~~l--~~sL~~LdLs~N~L~- 401 (754)
T PRK15370 345 --PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN---------------LPENL--PAALQIMQASRNNLV- 401 (754)
T ss_pred --cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC---------------CCHhH--HHHHHHHhhccCCcc-
Confidence 2466666666666542 33333 2466666666665532 23332 237999999999875
Q ss_pred CCcccc----ccCCCCCEEEEeCCcH
Q 007787 545 RLPEDL----WRVKSLTKLELWWPRF 566 (589)
Q Consensus 545 ~lp~~l----~~l~~L~~L~l~~~~~ 566 (589)
.+|..+ ..++++..|++.+||-
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 566544 3458899999999993
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1.5e-12 Score=144.68 Aligned_cols=202 Identities=24% Similarity=0.313 Sum_probs=135.3
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Cc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~ 399 (589)
..|+++++.++.+|..+. ++|+.|+|++|.++.+|..+. .+|++|++++|.+..+|..+. .+|+.|+++ ..
T Consensus 181 ~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 181 TELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred eEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC
Confidence 569999999999998775 689999999999999998765 599999999999999998764 589999999 44
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCC----CCCcee--------cCCCCC
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIP----SQLSSI--------VLPEYQ 465 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp----~~L~~L--------~lp~~~ 465 (589)
.+|..+. ++|+.|++.+++.. ..|.. + .++|+.|++++|. .+| ++|+.| .+|. .
T Consensus 255 ~LP~~l~---s~L~~L~Ls~N~L~-~LP~~-l------~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~-~ 322 (754)
T PRK15370 255 ELPERLP---SALQSLDLFHNKIS-CLPEN-L------PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE-T 322 (754)
T ss_pred cCChhHh---CCCCEEECcCCccC-ccccc-c------CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc-c
Confidence 5665544 57999997655443 34444 3 2589999999874 222 223322 2222 1
Q ss_pred CCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCC
Q 007787 466 FPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKR 545 (589)
Q Consensus 466 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~ 545 (589)
..++|+.|++++|.+++ +|..+. ++|+.|++++|.+.. +|..+ .++|+.|+|++|.+. .
T Consensus 323 l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~---------------LP~~l--p~~L~~LdLs~N~Lt-~ 381 (754)
T PRK15370 323 LPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV---------------LPETL--PPTITTLDVSRNALT-N 381 (754)
T ss_pred ccccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc---------------CChhh--cCCcCEEECCCCcCC-C
Confidence 12456666666666543 333332 466666666665532 12222 257888888888764 4
Q ss_pred CccccccCCCCCEEEEeCCc
Q 007787 546 LPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 546 lp~~l~~l~~L~~L~l~~~~ 565 (589)
+|..+. ++|+.|++++|.
T Consensus 382 LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 382 LPENLP--AALQIMQASRNN 399 (754)
T ss_pred CCHhHH--HHHHHHhhccCC
Confidence 665443 367777777775
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.24 E-value=1.7e-11 Score=135.75 Aligned_cols=198 Identities=19% Similarity=0.138 Sum_probs=122.6
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Cc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~ 399 (589)
+.|+|++|.++.+|.. .++|+.|++++|.++.+|... .+|+.|++++|.+..+|.. +++|+.|+++ ..
T Consensus 245 k~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 245 RTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA 315 (788)
T ss_pred cEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccc
Confidence 5577777777766642 346666677766666665422 4566777777777777653 4678888887 23
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCC---CCCcee--------cCCCCCC
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIP---SQLSSI--------VLPEYQF 466 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp---~~L~~L--------~lp~~~~ 466 (589)
.+|.. ..+|+.|++.+|+.. ..| . ...+|+.|++++|. .+| ++|+.| .+|. .
T Consensus 316 ~Lp~l----p~~L~~L~Ls~N~L~-~LP-~-------lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~--l 380 (788)
T PRK15387 316 SLPAL----PSELCKLWAYNNQLT-SLP-T-------LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA--L 380 (788)
T ss_pred cCCCC----cccccccccccCccc-ccc-c-------cccccceEecCCCccCCCCCCCcccceehhhccccccCcc--c
Confidence 33432 234566665444331 122 1 23467777777765 333 244444 3443 2
Q ss_pred CCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCC-------CCCccccCcccccccceeeEee
Q 007787 467 PPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFP-------SLKEWIVEFEAIPKLESLIINP 539 (589)
Q Consensus 467 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~-------~L~~l~~~~~~l~~L~~L~L~~ 539 (589)
+.+|+.|++++|.+++ +|.. .++|+.|++++|.+.+.. .....+. +++.+|..++.+++|+.|+|++
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP--~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 454 (788)
T ss_pred ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCC--cchhhhhhhhhccCcccccChHHhhccCCCeEECCC
Confidence 3478889999998864 3332 367888899888876532 1111111 2367788889999999999999
Q ss_pred cCCCCCCcccc
Q 007787 540 CAHLKRLPEDL 550 (589)
Q Consensus 540 n~~l~~lp~~l 550 (589)
|++.+..|..+
T Consensus 455 N~Ls~~~~~~L 465 (788)
T PRK15387 455 NPLSERTLQAL 465 (788)
T ss_pred CCCCchHHHHH
Confidence 99987766655
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.23 E-value=5.6e-13 Score=136.23 Aligned_cols=229 Identities=20% Similarity=0.134 Sum_probs=151.3
Q ss_pred cEEEEcCCCCc-----cCCcccCCCCCCCEEEeecCCccc-------cchhhcCCCCccEEEecCCccc-cccccccccc
Q 007787 323 KLLNLGTIVLE-----EYPAGINLLLLLKYLKLNIPYLKH-------LPASLCNLLNLYTIDMPSSYVR-CTPDSIGKMH 389 (589)
Q Consensus 323 r~L~L~~n~l~-----~~p~~~~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~l~-~lp~~~~~L~ 389 (589)
+.|++++|.++ .++..+...+.|++|+++++.+.. ++..+..+++|+.|++++|.+. ..+..+..+.
T Consensus 26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 105 (319)
T cd00116 26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL 105 (319)
T ss_pred cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh
Confidence 57899999884 456677788889999998887652 3445677889999999999764 4455555555
Q ss_pred c---CceeeecCcccC--------CcccccC-CCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCc
Q 007787 390 E---LRHLNFRTITLP--------AHPGKFC-TSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLS 457 (589)
Q Consensus 390 ~---L~~L~l~~~~lp--------~~i~~~l-~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~ 457 (589)
+ |++|+++...+. ..+. .+ ++|+.|++.++...+..... +......+++|++|++++++.-...+.
T Consensus 106 ~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 106 RSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEA-LAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred ccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHH-HHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 5 999999833332 2344 56 88999998888764333322 211112567899999988631100011
Q ss_pred eecCCC-CCCCCCccEEEEEeecCCCCC----CCCcccccccceeEEecCcccCceeeEecCCCCCCCccccC-cccccc
Q 007787 458 SIVLPE-YQFPPSLIELSLANTELRDDP----MPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVE-FEAIPK 531 (589)
Q Consensus 458 ~L~lp~-~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~-~~~l~~ 531 (589)
.++. +..+++|+.|++++|.+.+.. ...+..+++|++|++++|.+.+..... +... ....+.
T Consensus 184 --~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~----------l~~~~~~~~~~ 251 (319)
T cd00116 184 --ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA----------LASALLSPNIS 251 (319)
T ss_pred --HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH----------HHHHHhccCCC
Confidence 2333 445679999999999886432 334567789999999988876532100 0000 002478
Q ss_pred cceeeEeecCCCC----CCccccccCCCCCEEEEeCCc
Q 007787 532 LESLIINPCAHLK----RLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 532 L~~L~L~~n~~l~----~lp~~l~~l~~L~~L~l~~~~ 565 (589)
|+.|++++|.+.. .++..+..+++|+.+++++|+
T Consensus 252 L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 9999999998752 233445667899999999987
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=1.4e-12 Score=128.24 Aligned_cols=198 Identities=17% Similarity=0.157 Sum_probs=134.7
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeec-CCccccch-hhcCCCCccEEEecCCccccccc-cccccccCceeeec-
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNI-PYLKHLPA-SLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFR- 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~- 397 (589)
|.|||+.|.|+ .-|++|..+..|..|-+.+ |+|+.+|. .+++|..|+-|.+.-|++..++. .+..|++|..|.+.
T Consensus 94 RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 94 RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence 77899999888 5678888888887776655 78888886 45678888888888787766644 47778888777776
Q ss_pred --CcccCC-cccccCCCCcccccccccC-CCCchhh---hhcCcc-----------------------------------
Q 007787 398 --TITLPA-HPGKFCTSLENLNFISVLH-PSSCTRD---ILGRLP----------------------------------- 435 (589)
Q Consensus 398 --~~~lp~-~i~~~l~~L~~L~l~~~~~-~~~~~~~---~l~~L~----------------------------------- 435 (589)
...++. .+. .+.+++++.+..+.. ....++. .+...+
T Consensus 174 n~~q~i~~~tf~-~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~ 252 (498)
T KOG4237|consen 174 NKIQSICKGTFQ-GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLP 252 (498)
T ss_pred hhhhhhcccccc-chhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHH
Confidence 344454 344 666667666554442 1111111 000000
Q ss_pred ------------------cCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccc
Q 007787 436 ------------------SEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQ 495 (589)
Q Consensus 436 ------------------~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 495 (589)
.++++|+.|++++|. +. .+.+ |..+.+++.|.|..|++.......|.++..|+
T Consensus 253 s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-----i~--~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~ 325 (498)
T KOG4237|consen 253 SRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-----IT--RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLK 325 (498)
T ss_pred HhhccccCcCCcChHHHHhhcccceEeccCCCc-----cc--hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccce
Confidence 478899999999863 22 4444 78888888889988888666666788888888
Q ss_pred eeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCC
Q 007787 496 VLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAH 542 (589)
Q Consensus 496 ~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~ 542 (589)
.|+|.+|+++-.. |..+..+.+|.+|++-.|++
T Consensus 326 tL~L~~N~it~~~--------------~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 326 TLSLYDNQITTVA--------------PGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred eeeecCCeeEEEe--------------cccccccceeeeeehccCcc
Confidence 8888888886443 23344566677777777665
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=8.2e-13 Score=135.04 Aligned_cols=224 Identities=20% Similarity=0.107 Sum_probs=153.4
Q ss_pred EEEcCCCCc--cCCcccCCCCCCCEEEeecCCcc-----ccchhhcCCCCccEEEecCCcccc-------cccccccccc
Q 007787 325 LNLGTIVLE--EYPAGINLLLLLKYLKLNIPYLK-----HLPASLCNLLNLYTIDMPSSYVRC-------TPDSIGKMHE 390 (589)
Q Consensus 325 L~L~~n~l~--~~p~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-------lp~~~~~L~~ 390 (589)
|+|.++.++ ..+..+..+.+|++|+++++.++ .++..+...++|++|+++++.+.. ++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 678888776 55666677888999999999984 467777788899999999986653 3456777889
Q ss_pred CceeeecCcc----cCCcccccCCC---CcccccccccCCCCchhh---hhcCcccCC-CCCCeEEEeeCCCCCCCCcee
Q 007787 391 LRHLNFRTIT----LPAHPGKFCTS---LENLNFISVLHPSSCTRD---ILGRLPSEF-ELLESLKLVNELKIPSQLSSI 459 (589)
Q Consensus 391 L~~L~l~~~~----lp~~i~~~l~~---L~~L~l~~~~~~~~~~~~---~l~~L~~~l-~~L~~L~l~~~~~lp~~L~~L 459 (589)
|+.|+++... .+..+. .+.+ |++|++.++......... ++. .+ ++|+.|+++++......+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~----~~~~~L~~L~L~~n~l~~~~~~-- 155 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLK----DLPPALEKLVLGRNRLEGASCE-- 155 (319)
T ss_pred eeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHH----hCCCCceEEEcCCCcCCchHHH--
Confidence 9999998332 333444 4444 999998777654322222 133 45 8999999998641100001
Q ss_pred cCCC-CCCCCCccEEEEEeecCCCCC----CCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccce
Q 007787 460 VLPE-YQFPPSLIELSLANTELRDDP----MPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLES 534 (589)
Q Consensus 460 ~lp~-~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~ 534 (589)
.++. +..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+... ..+...+..+++|++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~----------~~l~~~~~~~~~L~~ 225 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA----------SALAETLASLKSLEV 225 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH----------HHHHHHhcccCCCCE
Confidence 2233 566788999999999987532 2334556799999999888764321 112234456889999
Q ss_pred eeEeecCCCCCCccccc-----cCCCCCEEEEeCCc
Q 007787 535 LIINPCAHLKRLPEDLW-----RVKSLTKLELWWPR 565 (589)
Q Consensus 535 L~L~~n~~l~~lp~~l~-----~l~~L~~L~l~~~~ 565 (589)
|++++|++....+..+. ..+.|++|++++|.
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 99999987642121121 24899999999997
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=2.4e-11 Score=124.80 Aligned_cols=160 Identities=28% Similarity=0.360 Sum_probs=129.2
Q ss_pred EEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Ccc
Q 007787 324 LLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TIT 400 (589)
Q Consensus 324 ~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~ 400 (589)
.+.|+.|.+..+|..++++..|.||+|+.|+++.+|..++.|+ |+.|.+++|+++.+|..++.+..|.+|+.+ ...
T Consensus 102 ~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s 180 (722)
T KOG0532|consen 102 SLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS 180 (722)
T ss_pred HHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhh
Confidence 3677788888899999999999999999999999999999887 999999999999999999999999999998 567
Q ss_pred cCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeec
Q 007787 401 LPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTE 479 (589)
Q Consensus 401 lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~ 479 (589)
+|..++ .+.+|+.|.+..++. ...|.+ +..| .|..|++++|.+. .+|- |.++++|++|.|.+|.
T Consensus 181 lpsql~-~l~slr~l~vrRn~l-~~lp~E-l~~L-----pLi~lDfScNkis-------~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 181 LPSQLG-YLTSLRDLNVRRNHL-EDLPEE-LCSL-----PLIRLDFSCNKIS-------YLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred chHHhh-hHHHHHHHHHhhhhh-hhCCHH-HhCC-----ceeeeecccCcee-------ecchhhhhhhhheeeeeccCC
Confidence 888888 999999998665553 456777 6644 4888999987533 7888 9999999999999999
Q ss_pred CCCCCCCCcc---cccccceeEEe
Q 007787 480 LRDDPMPKPK---KLLHLQVLKLK 500 (589)
Q Consensus 480 l~~~~~~~l~---~l~~L~~L~L~ 500 (589)
+ ..+|..++ ...=.++|+..
T Consensus 246 L-qSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 246 L-QSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred C-CCChHHHHhccceeeeeeecch
Confidence 8 44554443 23334455553
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=9.9e-12 Score=127.51 Aligned_cols=167 Identities=26% Similarity=0.369 Sum_probs=142.7
Q ss_pred EEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Ccc
Q 007787 324 LLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TIT 400 (589)
Q Consensus 324 ~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~ 400 (589)
..||+.|++..+|..++.+..|..|.|..|.+..+|..+++|..|.+|||+.|.+..+|..+..|+ |+.|-++ ...
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~ 157 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS 157 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc
Confidence 379999999999999999999999999999999999999999999999999999999999998776 7888887 678
Q ss_pred cCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeec
Q 007787 401 LPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTE 479 (589)
Q Consensus 401 lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~ 479 (589)
+|+.++ .+..|..|+...|+ ....+.. ++ .+.+|+.|.+..|. +. .+|+ +..++ |..||++.|+
T Consensus 158 lp~~ig-~~~tl~~ld~s~ne-i~slpsq-l~----~l~slr~l~vrRn~-----l~--~lp~El~~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 158 LPEEIG-LLPTLAHLDVSKNE-IQSLPSQ-LG----YLTSLRDLNVRRNH-----LE--DLPEELCSLP-LIRLDFSCNK 222 (722)
T ss_pred CCcccc-cchhHHHhhhhhhh-hhhchHH-hh----hHHHHHHHHHhhhh-----hh--hCCHHHhCCc-eeeeecccCc
Confidence 899999 99999999955544 4566666 76 67888888888763 22 6777 66554 9999999999
Q ss_pred CCCCCCCCcccccccceeEEecCcccCc
Q 007787 480 LRDDPMPKPKKLLHLQVLKLKKNSFIGR 507 (589)
Q Consensus 480 l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 507 (589)
+ ..+|-.|.+|..|++|.|.+|.+...
T Consensus 223 i-s~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 223 I-SYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred e-eecchhhhhhhhheeeeeccCCCCCC
Confidence 8 56777899999999999999987543
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.5e-10 Score=115.68 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=35.7
Q ss_pred cEEEEcCCCCccCC--cccCCCCCCCEEEeecCCccc---cchhhcCCCCccEEEecCCcccccccc--ccccccCceee
Q 007787 323 KLLNLGTIVLEEYP--AGINLLLLLKYLKLNIPYLKH---LPASLCNLLNLYTIDMPSSYVRCTPDS--IGKMHELRHLN 395 (589)
Q Consensus 323 r~L~L~~n~l~~~p--~~~~~l~~Lr~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~~~l~~lp~~--~~~L~~L~~L~ 395 (589)
|...|.++.+...+ .....|+++|.||||.|-+.. +-.-...|++|+.|+|+.|.+...-.+ -..+++|+.|.
T Consensus 124 ~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~ 203 (505)
T KOG3207|consen 124 REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLV 203 (505)
T ss_pred hheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEE
Confidence 44555555544333 244456666666666665542 222233566666666666644322111 11344555555
Q ss_pred ec
Q 007787 396 FR 397 (589)
Q Consensus 396 l~ 397 (589)
++
T Consensus 204 l~ 205 (505)
T KOG3207|consen 204 LN 205 (505)
T ss_pred ec
Confidence 55
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=1.1e-09 Score=115.46 Aligned_cols=169 Identities=26% Similarity=0.317 Sum_probs=119.7
Q ss_pred cEEEEcCCCCccCCcccCCCC-CCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---C
Q 007787 323 KLLNLGTIVLEEYPAGINLLL-LLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---T 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~ 398 (589)
..|++.+|.++.+|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+++|+.|+++ .
T Consensus 119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred eEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcc
Confidence 568888888888888777774 888888888888888777888888888888888888888877778888888888 4
Q ss_pred cccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEe
Q 007787 399 ITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLAN 477 (589)
Q Consensus 399 ~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~ 477 (589)
..+|..+. .+..|++|.+.++.. -..+.. +. ++.++..|.+.++.. . .++. ++.+++|+.|++++
T Consensus 199 ~~l~~~~~-~~~~L~~l~~~~N~~-~~~~~~-~~----~~~~l~~l~l~~n~~-----~--~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 199 SDLPPEIE-LLSALEELDLSNNSI-IELLSS-LS----NLKNLSGLELSNNKL-----E--DLPESIGNLSNLETLDLSN 264 (394)
T ss_pred ccCchhhh-hhhhhhhhhhcCCcc-eecchh-hh----hcccccccccCCcee-----e--eccchhccccccceecccc
Confidence 55666555 566688888555532 123333 33 455666666555421 1 2345 67777788888888
Q ss_pred ecCCCCCCCCcccccccceeEEecCcccCc
Q 007787 478 TELRDDPMPKPKKLLHLQVLKLKKNSFIGR 507 (589)
Q Consensus 478 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 507 (589)
|.++.... ++.+.+|+.|++++|.+...
T Consensus 265 n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 265 NQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccccc--ccccCccCEEeccCcccccc
Confidence 88744333 77788888888877776543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=2.7e-09 Score=112.59 Aligned_cols=192 Identities=22% Similarity=0.271 Sum_probs=142.2
Q ss_pred EEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCC-CccEEEecCCccccccccccccccCceeeec---Ccc
Q 007787 325 LNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLL-NLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TIT 400 (589)
Q Consensus 325 L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~ 400 (589)
+++..+.+...+..+..++.++.|++.+|.++.+|+.++.+. +|+.|++++|.+..+|..++.+++|+.|+++ ...
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~ 177 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD 177 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh
Confidence 677777765455556667889999999999999988888885 8999999999999888888899999999998 566
Q ss_pred cCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeec
Q 007787 401 LPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTE 479 (589)
Q Consensus 401 lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~ 479 (589)
+|...+ .+++|+.|++.++.. ...+.. ++ ...+|++|.+++|..+ ..+. +..+.++..+.+.+|+
T Consensus 178 l~~~~~-~~~~L~~L~ls~N~i-~~l~~~-~~----~~~~L~~l~~~~N~~~-------~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 178 LPKLLS-NLSNLNNLDLSGNKI-SDLPPE-IE----LLSALEELDLSNNSII-------ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhhhhh-hhhhhhheeccCCcc-ccCchh-hh----hhhhhhhhhhcCCcce-------ecchhhhhcccccccccCCce
Confidence 777666 788888888665554 223332 22 3456888888886311 4555 7778888888888888
Q ss_pred CCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCc
Q 007787 480 LRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLP 547 (589)
Q Consensus 480 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp 547 (589)
+. ..+..++.+++|+.|++++|.+.... .++.+.+|+.|++++|.+...+|
T Consensus 244 ~~-~~~~~~~~l~~l~~L~~s~n~i~~i~----------------~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 244 LE-DLPESIGNLSNLETLDLSNNQISSIS----------------SLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ee-eccchhccccccceeccccccccccc----------------cccccCccCEEeccCccccccch
Confidence 63 34677888888999999888875543 25667788888888877655444
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=1.4e-08 Score=115.11 Aligned_cols=221 Identities=21% Similarity=0.197 Sum_probs=133.8
Q ss_pred CCCCccCCcccCCCCCCCEEEeecCC--ccccchh-hcCCCCccEEEecCC-ccccccccccccccCceeeec---Cccc
Q 007787 329 TIVLEEYPAGINLLLLLKYLKLNIPY--LKHLPAS-LCNLLNLYTIDMPSS-YVRCTPDSIGKMHELRHLNFR---TITL 401 (589)
Q Consensus 329 ~n~l~~~p~~~~~l~~Lr~L~L~~~~--i~~lp~~-i~~L~~L~~L~L~~~-~l~~lp~~~~~L~~L~~L~l~---~~~l 401 (589)
+|.+..++.+. .++.|+.|-+..|. +..++.. +..++.|++|||++| .+..+|+.+++|-+||+|+++ ...+
T Consensus 532 ~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 532 NNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL 610 (889)
T ss_pred ccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc
Confidence 34444444433 35589999999986 6666655 567999999999999 889999999999999999999 5678
Q ss_pred CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC-CCC-------CCCcee-----cCC-----C
Q 007787 402 PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL-KIP-------SQLSSI-----VLP-----E 463 (589)
Q Consensus 402 p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~-~lp-------~~L~~L-----~lp-----~ 463 (589)
|.++. +|..|.+|++.........+.. +. .|.+|++|.+.... ... .+|+.| ... .
T Consensus 611 P~~l~-~Lk~L~~Lnl~~~~~l~~~~~i-~~----~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e 684 (889)
T KOG4658|consen 611 PSGLG-NLKKLIYLNLEVTGRLESIPGI-LL----ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLE 684 (889)
T ss_pred chHHH-HHHhhheeccccccccccccch-hh----hcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHh
Confidence 99999 9999999998776653333333 33 58899999998743 000 022222 000 0
Q ss_pred -CCCCCCcc----EEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeE----ecC-CCCCC----------Cccc
Q 007787 464 -YQFPPSLI----ELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLIC----RFG-CFPSL----------KEWI 523 (589)
Q Consensus 464 -~~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~----~~~-~f~~L----------~~l~ 523 (589)
+..+..|. .+.+.++.. ...+..++.+.+|+.|.+.++......... ... .|+++ ...+
T Consensus 685 ~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 685 DLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred hhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 11112222 222222222 334556778888888888766653222100 001 13333 1112
Q ss_pred cCcccccccceeeEeecCCCCCCccccccCCCCC
Q 007787 524 VEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLT 557 (589)
Q Consensus 524 ~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~ 557 (589)
.+..-.|+|+.|.+.+|+....+.+....+..++
T Consensus 764 ~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~ 797 (889)
T KOG4658|consen 764 TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK 797 (889)
T ss_pred chhhccCcccEEEEecccccccCCCHHHHhhhcc
Confidence 2233456777777777776655443333333333
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.5e-09 Score=105.21 Aligned_cols=212 Identities=19% Similarity=0.098 Sum_probs=133.8
Q ss_pred cCCcccCCCCCCCEEEeecCCccccch--hhcCCCCccEEEecCCcc---ccccccccccccCceeeecCcccCCccc--
Q 007787 334 EYPAGINLLLLLKYLKLNIPYLKHLPA--SLCNLLNLYTIDMPSSYV---RCTPDSIGKMHELRHLNFRTITLPAHPG-- 406 (589)
Q Consensus 334 ~~p~~~~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l---~~lp~~~~~L~~L~~L~l~~~~lp~~i~-- 406 (589)
.+..-=.++.+||...|.++.+...+. ....|++++.|||++|-+ ..+-.-...|++|+.|+++...+...++
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 333334578899999999998886663 566799999999999944 3444556789999999999443332222
Q ss_pred --ccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC-CCCCCCceecCCC-CCCCCCccEEEEEeecCCC
Q 007787 407 --KFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL-KIPSQLSSIVLPE-YQFPPSLIELSLANTELRD 482 (589)
Q Consensus 407 --~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~-~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~l~~ 482 (589)
..+++|+.|.+.+|+.+...... +. ..+++|+.|++..|. .+ .-.. ...+..|+.|+|++|.+..
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~-~~---~~fPsl~~L~L~~N~~~~-------~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQW-IL---LTFPSLEVLYLEANEIIL-------IKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHH-HH---HhCCcHHHhhhhcccccc-------eecchhhhhhHHhhccccCCcccc
Confidence 14678888888888876554444 33 378999999999873 11 0011 3446678888888887643
Q ss_pred CC-CCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCc--cccccCCCCCEE
Q 007787 483 DP-MPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLP--EDLWRVKSLTKL 559 (589)
Q Consensus 483 ~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp--~~l~~l~~L~~L 559 (589)
.. ....+.+|.|..|+++.+.+.....+.... -.....+|+|++|++..|++. ..+ ..+..+++|+.|
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s--------~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES--------LDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHL 331 (505)
T ss_pred cccccccccccchhhhhccccCcchhcCCCccc--------hhhhcccccceeeecccCccc-cccccchhhccchhhhh
Confidence 32 345678888888888877765543221100 001234667777777777662 122 123445555655
Q ss_pred EEeCCc
Q 007787 560 ELWWPR 565 (589)
Q Consensus 560 ~l~~~~ 565 (589)
.+..++
T Consensus 332 ~~~~n~ 337 (505)
T KOG3207|consen 332 RITLNY 337 (505)
T ss_pred hccccc
Confidence 554444
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=2.4e-10 Score=111.22 Aligned_cols=228 Identities=17% Similarity=0.151 Sum_probs=143.8
Q ss_pred cEEEEcCCCCc-----cCCcccCCCCCCCEEEeecCC---c-cccchh-------hcCCCCccEEEecCCccc-c----c
Q 007787 323 KLLNLGTIVLE-----EYPAGINLLLLLKYLKLNIPY---L-KHLPAS-------LCNLLNLYTIDMPSSYVR-C----T 381 (589)
Q Consensus 323 r~L~L~~n~l~-----~~p~~~~~l~~Lr~L~L~~~~---i-~~lp~~-------i~~L~~L~~L~L~~~~l~-~----l 381 (589)
..++|+||.+. .+-..+.+.++||..++++-- . .++|+. +-..++|++||||+|-++ . +
T Consensus 33 ~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l 112 (382)
T KOG1909|consen 33 TKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGL 112 (382)
T ss_pred EEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHH
Confidence 45899999876 345566778899998888631 2 256653 345678999999999543 1 2
Q ss_pred cccccccccCceeeecCccc-----------------CCcccccCCCCcccccccccCCCC---chhhhhcCcccCCCCC
Q 007787 382 PDSIGKMHELRHLNFRTITL-----------------PAHPGKFCTSLENLNFISVLHPSS---CTRDILGRLPSEFELL 441 (589)
Q Consensus 382 p~~~~~L~~L~~L~l~~~~l-----------------p~~i~~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~~l~~L 441 (589)
-.-+.++..|++|+|...-+ -..+. .-+.|+++...+|..... .+..++. ..+.|
T Consensus 113 ~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~-~~~~Lrv~i~~rNrlen~ga~~~A~~~~----~~~~l 187 (382)
T KOG1909|consen 113 EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAA-SKPKLRVFICGRNRLENGGATALAEAFQ----SHPTL 187 (382)
T ss_pred HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccC-CCcceEEEEeeccccccccHHHHHHHHH----hcccc
Confidence 22356678889988871111 11233 456788887444433111 1122243 56788
Q ss_pred CeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeecCCCC----CCCCcccccccceeEEecCcccCceeeEecCCC
Q 007787 442 ESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTELRDD----PMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCF 516 (589)
Q Consensus 442 ~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f 516 (589)
+.+.++.|++-|+... -+.. +..+++|+.|+|.+|.++.. ....+..+|+|+.|+++++.+..........
T Consensus 188 eevr~~qN~I~~eG~~--al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~-- 263 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVT--ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD-- 263 (382)
T ss_pred ceEEEecccccCchhH--HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH--
Confidence 9999988875544332 2222 67889999999999988543 2345667889999999877665432100000
Q ss_pred CCCCccccCcccccccceeeEeecCCCCC----CccccccCCCCCEEEEeCCcH
Q 007787 517 PSLKEWIVEFEAIPKLESLIINPCAHLKR----LPEDLWRVKSLTKLELWWPRF 566 (589)
Q Consensus 517 ~~L~~l~~~~~~l~~L~~L~L~~n~~l~~----lp~~l~~l~~L~~L~l~~~~~ 566 (589)
..-...|+|+.|.+.+|.+... +-..+...|.|..|+|++|..
T Consensus 264 -------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 -------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 0112478899999999987532 222345578899999999873
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=1.6e-08 Score=92.36 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=30.4
Q ss_pred cEEEEcCCCCccCCcccC-CCCCCCEEEeecCCccccchhhcCCCCccEEEecCCcccccccccc-ccccCceeeecCcc
Q 007787 323 KLLNLGTIVLEEYPAGIN-LLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIG-KMHELRHLNFRTIT 400 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~-~L~~L~~L~l~~~~ 400 (589)
|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++|.|+.++..+. .+++|++|+++...
T Consensus 22 ~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 22 RELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred cccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence 66888888887654 355 5778888888888888775 46778888888888888877765553 57788888777333
Q ss_pred cCC-----cccccCCCCccccccccc
Q 007787 401 LPA-----HPGKFCTSLENLNFISVL 421 (589)
Q Consensus 401 lp~-----~i~~~l~~L~~L~l~~~~ 421 (589)
+.. .+. .+++|+.|++.+|.
T Consensus 100 I~~l~~l~~L~-~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 100 ISDLNELEPLS-SLPKLRVLSLEGNP 124 (175)
T ss_dssp --SCCCCGGGG-G-TT--EEE-TT-G
T ss_pred CCChHHhHHHH-cCCCcceeeccCCc
Confidence 321 233 45555555554443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=1.1e-08 Score=93.44 Aligned_cols=136 Identities=20% Similarity=0.186 Sum_probs=40.0
Q ss_pred cCCCCccCCcccCCCCCCCEEEeecCCccccchhhc-CCCCccEEEecCCccccccccccccccCceeeecCc---ccCC
Q 007787 328 GTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLC-NLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTI---TLPA 403 (589)
Q Consensus 328 ~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~---~lp~ 403 (589)
..+.+...|. +.+..+++.|+|++|.|+.+. .++ .+.+|+.|++++|.|..++ ++..+++|+.|+++.. .+++
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 3344444443 445668899999999999774 465 6889999999999998884 5666777777777622 2222
Q ss_pred cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCC
Q 007787 404 HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDD 483 (589)
Q Consensus 404 ~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~ 483 (589)
.+...+++|++|++.++... + +. .+-.+..+++|+.|+|.+|.++..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~-----~-l~---------------------------~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKIS-----D-LN---------------------------ELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp HHHHH-TT--EEE-TTS--------S-CC---------------------------CCGGGGG-TT--EEE-TT-GGGGS
T ss_pred chHHhCCcCCEEECcCCcCC-----C-hH---------------------------HhHHHHcCCCcceeeccCCcccch
Confidence 22113555555554333320 0 00 110144567888888888887543
Q ss_pred CC---CCcccccccceeEE
Q 007787 484 PM---PKPKKLLHLQVLKL 499 (589)
Q Consensus 484 ~~---~~l~~l~~L~~L~L 499 (589)
.- ..+..+|+|+.|+-
T Consensus 129 ~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 129 KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTHHHHHHHH-TT-SEETT
T ss_pred hhHHHHHHHHcChhheeCC
Confidence 21 13567888888875
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=6.6e-09 Score=99.07 Aligned_cols=198 Identities=16% Similarity=0.064 Sum_probs=104.4
Q ss_pred CcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec-----CcccCCcccccCC
Q 007787 336 PAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR-----TITLPAHPGKFCT 410 (589)
Q Consensus 336 p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~-----~~~lp~~i~~~l~ 410 (589)
|-.+.-+.+|+.+.+|.+.-..+-.-...-+.|+++.++++.+...|.-+ -...+..+.-+ .+.....+. .-+
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~~~D~~~~E~~t~~G~~~~~~d-TWq 284 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL-PETILADPSGSEPSTSNGSALVSAD-TWQ 284 (490)
T ss_pred ccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc-chhhhcCccCCCCCccCCceEEecc-hHh
Confidence 33444456666677776654443332233456777777766444333211 11122211111 111111222 345
Q ss_pred CCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCCCCCCccc
Q 007787 411 SLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKK 490 (589)
Q Consensus 411 ~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 490 (589)
.|++|+++.+.. ..+-+. .. -.+.++.|+++.|+.. .+..+..+++|+.|+|++|.++. ...+-..
T Consensus 285 ~LtelDLS~N~I-~~iDES-vK----L~Pkir~L~lS~N~i~-------~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~K 350 (490)
T KOG1259|consen 285 ELTELDLSGNLI-TQIDES-VK----LAPKLRRLILSQNRIR-------TVQNLAELPQLQLLDLSGNLLAE-CVGWHLK 350 (490)
T ss_pred hhhhccccccch-hhhhhh-hh----hccceeEEecccccee-------eehhhhhcccceEeecccchhHh-hhhhHhh
Confidence 667777655543 111122 32 3467777777776421 12225566777788888777632 2333345
Q ss_pred ccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCC-CccccccCCCCCEEEEeCCc
Q 007787 491 LLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKR-LPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 491 l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~-lp~~l~~l~~L~~L~l~~~~ 565 (589)
|-+.+.|.|+.|.+.... .++.+-+|..|++++|++... --.+++++|+|+.+.+.+||
T Consensus 351 LGNIKtL~La~N~iE~LS----------------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLS----------------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhhhhHhhhh----------------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 667777777777664322 455666777777777776321 12356777777777777777
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=1.5e-08 Score=98.96 Aligned_cols=213 Identities=20% Similarity=0.204 Sum_probs=137.5
Q ss_pred ccCCCCCCCEEEeecCCcc-----ccchhhcCCCCccEEEecCCcc----cccccc-------ccccccCceeeecCcc-
Q 007787 338 GINLLLLLKYLKLNIPYLK-----HLPASLCNLLNLYTIDMPSSYV----RCTPDS-------IGKMHELRHLNFRTIT- 400 (589)
Q Consensus 338 ~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l----~~lp~~-------~~~L~~L~~L~l~~~~- 400 (589)
.+-.+..+++++||+|.+. .+.+.+.+.++|+.-++++-.. .++|+. +-..++|+.|+||.+.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4456788999999999987 3556677888999999987632 445554 3456789999999222
Q ss_pred ---cCCc----ccccCCCCcccccccccCCC---CchhhhhcCcc-----cCCCCCCeEEEeeCCCCCCCCcee---cCC
Q 007787 401 ---LPAH----PGKFCTSLENLNFISVLHPS---SCTRDILGRLP-----SEFELLESLKLVNELKIPSQLSSI---VLP 462 (589)
Q Consensus 401 ---lp~~----i~~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~-----~~l~~L~~L~l~~~~~lp~~L~~L---~lp 462 (589)
-++. +. .+++|++|.+.+|.... ..+..++..+. ..-++|+++....|. +..- .+.
T Consensus 105 G~~g~~~l~~ll~-s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-----len~ga~~~A 178 (382)
T KOG1909|consen 105 GPKGIRGLEELLS-SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-----LENGGATALA 178 (382)
T ss_pred CccchHHHHHHHH-hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-----cccccHHHHH
Confidence 2222 45 78899999977776521 11110011111 245678888777642 1100 122
Q ss_pred C-CCCCCCccEEEEEeecCCCCC----CCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeE
Q 007787 463 E-YQFPPSLIELSLANTELRDDP----MPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLII 537 (589)
Q Consensus 463 ~-~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L 537 (589)
. ++..+.|+.+.+..|.+...- ...+..+|+|+.|+|..|-++...-. .+...+..+|+|+.|++
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~----------~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV----------ALAKALSSWPHLRELNL 248 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH----------HHHHHhcccchheeecc
Confidence 2 566788999999999874322 23466889999999988887543311 11224556889999999
Q ss_pred eecCCCCCCc----ccc-ccCCCCCEEEEeCCcH
Q 007787 538 NPCAHLKRLP----EDL-WRVKSLTKLELWWPRF 566 (589)
Q Consensus 538 ~~n~~l~~lp----~~l-~~l~~L~~L~l~~~~~ 566 (589)
++|.+...-. ..+ ...|+|+.|.+.+|..
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 9998864321 122 2478999999999873
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=2.2e-07 Score=69.62 Aligned_cols=60 Identities=27% Similarity=0.373 Sum_probs=38.1
Q ss_pred CCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecC
Q 007787 468 PSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCA 541 (589)
Q Consensus 468 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~ 541 (589)
++|++|++++|++...++..|..+++|++|++++|.+.... +..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~--------------~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP--------------PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE--------------TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC--------------HHHHcCCCCCCEEeCcCCc
Confidence 45667777777766655666677777777777666664333 2345566667777766665
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=6e-07 Score=99.67 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=48.8
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCcc-ccchhhcCCCCccEEEecCCccc-cccccccccccCceeeec
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLK-HLPASLCNLLNLYTIDMPSSYVR-CTPDSIGKMHELRHLNFR 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~ 397 (589)
+.|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 34666666666 66666667777777777777665 66666666777777777776553 456556666666666555
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=4.1e-07 Score=100.97 Aligned_cols=92 Identities=21% Similarity=0.224 Sum_probs=62.1
Q ss_pred cCCC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEe
Q 007787 460 VLPE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIIN 538 (589)
Q Consensus 460 ~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~ 538 (589)
.+|. ++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.. |..++.+++|+.|+|+
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i--------------P~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI--------------PESLGQLTSLRILNLN 498 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC--------------chHHhcCCCCCEEECc
Confidence 3455 666777777777777777777777777777777777777776543 4556667777777777
Q ss_pred ecCCCCCCccccccC-CCCCEEEEeCCc
Q 007787 539 PCAHLKRLPEDLWRV-KSLTKLELWWPR 565 (589)
Q Consensus 539 ~n~~l~~lp~~l~~l-~~L~~L~l~~~~ 565 (589)
+|.+.+.+|..+..+ .++..+++.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 777777777665542 355666666655
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=9e-08 Score=91.48 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=70.2
Q ss_pred EEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCcccCC
Q 007787 324 LLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITLPA 403 (589)
Q Consensus 324 ~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~ 403 (589)
.+||++|.|+.+-+++.-+|.+|.|++|+|.|..+-. +..|++|+.|||++|.+.++--.-.
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~----------------- 349 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHL----------------- 349 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHh-----------------
Confidence 3666666666665566666666666666666665533 5566666666666665554422222
Q ss_pred cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCcee-cCCCCCCCCCccEEEEEeecCCC
Q 007787 404 HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSI-VLPEYQFPPSLIELSLANTELRD 482 (589)
Q Consensus 404 ~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L-~lp~~~~l~~L~~L~L~~n~l~~ 482 (589)
++-+.++|.+..+.. ..+.. ++ ++-+|..|++++|. ++.+ .+..++++|.|+.|.|.+|.+.+
T Consensus 350 ----KLGNIKtL~La~N~i--E~LSG-L~----KLYSLvnLDl~~N~-----Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 350 ----KLGNIKTLKLAQNKI--ETLSG-LR----KLYSLVNLDLSSNQ-----IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ----hhcCEeeeehhhhhH--hhhhh-hH----hhhhheeccccccc-----hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 344445555444332 12222 43 45566666666652 2322 22227788888888888888744
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=8.8e-07 Score=66.28 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=27.2
Q ss_pred EEEEcCCCCccCC-cccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCc
Q 007787 324 LLNLGTIVLEEYP-AGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSY 377 (589)
Q Consensus 324 ~L~L~~n~l~~~p-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 377 (589)
.|++++|.++.+| ..|..+++|++|++++|.++.+|+ .+.++++|++|++++|.
T Consensus 5 ~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 5 SLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp EEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred EEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3555555555443 244455555555555555554443 34455555555555553
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=1.4e-07 Score=99.96 Aligned_cols=167 Identities=20% Similarity=0.211 Sum_probs=94.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecC---c
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRT---I 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~---~ 399 (589)
..|++.+|.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++++|.+..++ .+..+++|+.++++. .
T Consensus 98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 98 EALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhh
Confidence 4577777777766655667777777777777777664 3666677777777777776663 444467777777762 2
Q ss_pred ccCCc-ccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCC--CccEEEEE
Q 007787 400 TLPAH-PGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPP--SLIELSLA 476 (589)
Q Consensus 400 ~lp~~-i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~--~L~~L~L~ 476 (589)
.+... .. .+.+|+.+.+..+... .+.. +. .+..+..+++..|. +. .+-.+..+. +|+.++++
T Consensus 176 ~ie~~~~~-~~~~l~~l~l~~n~i~--~i~~-~~----~~~~l~~~~l~~n~-----i~--~~~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 176 DIENDELS-ELISLEELDLGGNSIR--EIEG-LD----LLKKLVLLSLLDNK-----IS--KLEGLNELVMLHLRELYLS 240 (414)
T ss_pred hhhhhhhh-hccchHHHhccCCchh--cccc-hH----HHHHHHHhhccccc-----ce--eccCcccchhHHHHHHhcc
Confidence 22221 23 5666666665544431 1111 11 12223333333321 11 010022222 27888888
Q ss_pred eecCCCCCCCCcccccccceeEEecCcccCc
Q 007787 477 NTELRDDPMPKPKKLLHLQVLKLKKNSFIGR 507 (589)
Q Consensus 477 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 507 (589)
+|.+.. .+..+..++.+..|++.+|.+...
T Consensus 241 ~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 241 GNRISR-SPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred cCcccc-ccccccccccccccchhhcccccc
Confidence 888643 325566777888888877766543
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.7e-06 Score=59.67 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCCEEEeecCCccccchhhcCCCCccEEEecCCcccccc
Q 007787 343 LLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTP 382 (589)
Q Consensus 343 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp 382 (589)
++|++|++++|+|+.+|+.+++|++|++|++++|.+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4789999999999999988999999999999999887764
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.14 E-value=2.7e-07 Score=97.83 Aligned_cols=167 Identities=20% Similarity=0.191 Sum_probs=115.5
Q ss_pred EEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCcccC--
Q 007787 325 LNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITLP-- 402 (589)
Q Consensus 325 L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~lp-- 402 (589)
+.+..|.+..+-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|.|+.+ ..+..++.|+.|+++.+.+-
T Consensus 77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~ 155 (414)
T KOG0531|consen 77 LNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDI 155 (414)
T ss_pred hccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhc
Confidence 556666666655568889999999999999998876688899999999999999888 46777888999999844332
Q ss_pred CcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCC
Q 007787 403 AHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRD 482 (589)
Q Consensus 403 ~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~ 482 (589)
.++. .+++|+.+++.++......... +. .+.+|+.+.+.+|... .+..+..+..+..+++..|.+..
T Consensus 156 ~~~~-~l~~L~~l~l~~n~i~~ie~~~-~~----~~~~l~~l~l~~n~i~-------~i~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 156 SGLE-SLKSLKLLDLSYNRIVDIENDE-LS----ELISLEELDLGGNSIR-------EIEGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred cCCc-cchhhhcccCCcchhhhhhhhh-hh----hccchHHHhccCCchh-------cccchHHHHHHHHhhccccccee
Confidence 3455 6888888887666542222200 01 5778888888886311 11114445566666888888743
Q ss_pred CCCCCcccccc--cceeEEecCcccCc
Q 007787 483 DPMPKPKKLLH--LQVLKLKKNSFIGR 507 (589)
Q Consensus 483 ~~~~~l~~l~~--L~~L~L~~n~~~~~ 507 (589)
.. .+..++. |+.+++++|.+...
T Consensus 223 ~~--~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 223 LE--GLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred cc--CcccchhHHHHHHhcccCccccc
Confidence 32 2233333 89999999887543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.1e-07 Score=90.99 Aligned_cols=173 Identities=18% Similarity=0.237 Sum_probs=79.8
Q ss_pred ccEEEecCCccc--cccccccccccCceeeecCcccCC----cccccCCCCcccccccccC-CCCchhhhhcCcccCCCC
Q 007787 368 LYTIDMPSSYVR--CTPDSIGKMHELRHLNFRTITLPA----HPGKFCTSLENLNFISVLH-PSSCTRDILGRLPSEFEL 440 (589)
Q Consensus 368 L~~L~L~~~~l~--~lp~~~~~L~~L~~L~l~~~~lp~----~i~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~~l~~ 440 (589)
||+|||+...|+ .+---+..+.+|+.|.+.+..+.+ .|. +-.+|+.|++..++. +....+- +- ..++.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~l-l~---~scs~ 261 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQL-LL---SSCSR 261 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHH-HH---Hhhhh
Confidence 555555555332 222234445555555554333322 233 455566666555544 2222222 11 25566
Q ss_pred CCeEEEeeCCCCCCCCceecCCCCC-CCCCccEEEEEeec--CCCCCCCC-cccccccceeEEecCc-ccCceeeEecCC
Q 007787 441 LESLKLVNELKIPSQLSSIVLPEYQ-FPPSLIELSLANTE--LRDDPMPK-PKKLLHLQVLKLKKNS-FIGRKLICRFGC 515 (589)
Q Consensus 441 L~~L~l~~~~~lp~~L~~L~lp~~~-~l~~L~~L~L~~n~--l~~~~~~~-l~~l~~L~~L~L~~n~-~~~~~~~~~~~~ 515 (589)
|..|+++|++...+..+.+ +. --++|+.|+|+++. +....... ...+|+|.+|+|+.|. ++...
T Consensus 262 L~~LNlsWc~l~~~~Vtv~----V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~------- 330 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVA----VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC------- 330 (419)
T ss_pred HhhcCchHhhccchhhhHH----HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-------
Confidence 6666666643111000000 11 11456666666654 11111112 2356667777776543 21110
Q ss_pred CCCCCccccCcccccccceeeEeecCCCCCCcc---ccccCCCCCEEEEeCCc
Q 007787 516 FPSLKEWIVEFEAIPKLESLIINPCAHLKRLPE---DLWRVKSLTKLELWWPR 565 (589)
Q Consensus 516 f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~---~l~~l~~L~~L~l~~~~ 565 (589)
-..+..++.|++|.++.|-. .+|. .+...|+|.+|++.||-
T Consensus 331 -------~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 331 -------FQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -------HHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 11344566777777777653 2333 24556777777777754
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.7e-07 Score=88.28 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=47.6
Q ss_pred cEEEEcCCCCc--cCCcccCCCCCCCEEEeecCCcc-ccchhhcCCCCccEEEecCC-ccccc--cccccccccCceeee
Q 007787 323 KLLNLGTIVLE--EYPAGINLLLLLKYLKLNIPYLK-HLPASLCNLLNLYTIDMPSS-YVRCT--PDSIGKMHELRHLNF 396 (589)
Q Consensus 323 r~L~L~~n~l~--~~p~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~-~l~~l--p~~~~~L~~L~~L~l 396 (589)
+.|||+...++ .+..-+..|.+|+.|+|.++.+. .+-..|++-.+|+.|+|+.| .+++- .--+.+++.|..|++
T Consensus 188 q~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl 267 (419)
T KOG2120|consen 188 QHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL 267 (419)
T ss_pred HHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc
Confidence 44677777666 44445566777777777777766 45556667777777777777 44432 122555666666666
Q ss_pred c
Q 007787 397 R 397 (589)
Q Consensus 397 ~ 397 (589)
+
T Consensus 268 s 268 (419)
T KOG2120|consen 268 S 268 (419)
T ss_pred h
Confidence 6
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=2e-07 Score=98.79 Aligned_cols=41 Identities=24% Similarity=0.171 Sum_probs=20.6
Q ss_pred CcccccccceeeEeecCCCCCCc-cccccCCCCCEEEEeCCc
Q 007787 525 EFEAIPKLESLIINPCAHLKRLP-EDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 525 ~~~~l~~L~~L~L~~n~~l~~lp-~~l~~l~~L~~L~l~~~~ 565 (589)
.+.++.+|+.|++++|-+.+.-- ..++.|.+|+.|+|.|||
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 34455566666666655443210 113445556666666665
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=2e-06 Score=82.48 Aligned_cols=215 Identities=15% Similarity=0.137 Sum_probs=114.4
Q ss_pred EEEEcCCCCccCC--cccC-CCCCCCEEEeecCCccc---cchhhcCCCCccEEEecCCccccccccc-cccccCceeee
Q 007787 324 LLNLGTIVLEEYP--AGIN-LLLLLKYLKLNIPYLKH---LPASLCNLLNLYTIDMPSSYVRCTPDSI-GKMHELRHLNF 396 (589)
Q Consensus 324 ~L~L~~n~l~~~p--~~~~-~l~~Lr~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~~~l~~lp~~~-~~L~~L~~L~l 396 (589)
+|.+.++.+...- ..|+ .+.+++.|||.+|.|+. +-.-+.+|+.|++|+|+.|.+...-... ..+.+|+.|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 4555555554221 1222 45667777777777763 3223346777777777777442211111 23456666666
Q ss_pred cCcccC-----CcccccCCCCcccccccccC-----CCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCcee--cCCC-
Q 007787 397 RTITLP-----AHPGKFCTSLENLNFISVLH-----PSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSI--VLPE- 463 (589)
Q Consensus 397 ~~~~lp-----~~i~~~l~~L~~L~l~~~~~-----~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L--~lp~- 463 (589)
++..+| ..+. .++.++.|+++.++. .....+. + -+.+++|+...++ ..+ ..-.
T Consensus 129 NgT~L~w~~~~s~l~-~lP~vtelHmS~N~~rq~n~Dd~c~e~-~------s~~v~tlh~~~c~------~~~w~~~~~l 194 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLD-DLPKVTELHMSDNSLRQLNLDDNCIED-W------STEVLTLHQLPCL------EQLWLNKNKL 194 (418)
T ss_pred cCCCCChhhhhhhhh-cchhhhhhhhccchhhhhccccccccc-c------chhhhhhhcCCcH------HHHHHHHHhH
Confidence 633333 2233 555666666555432 1111111 1 1223333332211 000 1111
Q ss_pred CCCCCCccEEEEEeecCCCCC-CCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCC
Q 007787 464 YQFPPSLIELSLANTELRDDP-MPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAH 542 (589)
Q Consensus 464 ~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~ 542 (589)
..-++|+..+-+..|.+.... -.....+|.+-.|+|+.|++..... -..+..||.|..|.+.++|+
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas-------------vD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS-------------VDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH-------------HHHHcCCchhheeeccCCcc
Confidence 234678888888888764432 2345567888888888787743220 12456788999999999998
Q ss_pred CCCCcc------ccccCCCCCEEEEeCCc
Q 007787 543 LKRLPE------DLWRVKSLTKLELWWPR 565 (589)
Q Consensus 543 l~~lp~------~l~~l~~L~~L~l~~~~ 565 (589)
...+-. -++.|++++.|+=+...
T Consensus 262 ~d~l~~~err~llIaRL~~v~vLNGskIs 290 (418)
T KOG2982|consen 262 SDPLRGGERRFLLIARLTKVQVLNGSKIS 290 (418)
T ss_pred cccccCCcceEEEEeeccceEEecCcccc
Confidence 765422 25677888887655433
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=4.4e-05 Score=52.57 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=34.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccch
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPA 360 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~ 360 (589)
|+|++++|.++.+|..+++|++|++|++++|.|+.+|.
T Consensus 4 ~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 4 EELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred eEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 67999999999999889999999999999999997764
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=5.5e-06 Score=70.64 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=62.5
Q ss_pred EEEEcCCCCccCCc---ccCCCCCCCEEEeecCCccccchhhc-CCCCccEEEecCCccccccccccccccCceeeec--
Q 007787 324 LLNLGTIVLEEYPA---GINLLLLLKYLKLNIPYLKHLPASLC-NLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR-- 397 (589)
Q Consensus 324 ~L~L~~n~l~~~p~---~~~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~-- 397 (589)
.++|++|.+-.+++ .+....+|...+|++|.++.+|+.+. +.+.+++|++++|.+.++|.++..++.|+.|+++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 36777777654443 34455667777777777777777664 4557777788777777777777777777777777
Q ss_pred -CcccCCcccccCCCCcccc
Q 007787 398 -TITLPAHPGKFCTSLENLN 416 (589)
Q Consensus 398 -~~~lp~~i~~~l~~L~~L~ 416 (589)
....|.-+. .|.+|-.|+
T Consensus 111 ~l~~~p~vi~-~L~~l~~Ld 129 (177)
T KOG4579|consen 111 PLNAEPRVIA-PLIKLDMLD 129 (177)
T ss_pred ccccchHHHH-HHHhHHHhc
Confidence 445565566 566666665
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.52 E-value=9.4e-06 Score=76.96 Aligned_cols=96 Identities=20% Similarity=0.178 Sum_probs=53.0
Q ss_pred CCCCCCCEEEeecCCcc-----ccchhhcCCCCccEEEecCCccc----cccccccccccCceeeecCcccCCcccccCC
Q 007787 340 NLLLLLKYLKLNIPYLK-----HLPASLCNLLNLYTIDMPSSYVR----CTPDSIGKMHELRHLNFRTITLPAHPGKFCT 410 (589)
Q Consensus 340 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~----~lp~~~~~L~~L~~L~l~~~~lp~~i~~~l~ 410 (589)
.-+..+..++||+|.|. .+...|.+-.+|+..++++-..+ ++|+++. .+.+.+. +++
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~-------------~Ll~aLl-kcp 92 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV-------------MLLKALL-KCP 92 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH-------------HHHHHHh-cCC
Confidence 34677778888888776 34455666677777777665332 2232211 1112233 556
Q ss_pred CCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC
Q 007787 411 SLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL 450 (589)
Q Consensus 411 ~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~ 450 (589)
.|++.+++.+......+.. ++.+.++-+.|.+|.+++||
T Consensus 93 ~l~~v~LSDNAfg~~~~e~-L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEE-LGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cceeeeccccccCcccchH-HHHHHhcCCCceeEEeecCC
Confidence 6666665555554455554 44444455566666666655
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=1.4e-05 Score=88.83 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=74.0
Q ss_pred cEEEEcCCCCc--cCCcccC-CCCCCCEEEeecCCcc--ccchhhcCCCCccEEEecCCccccccccccccccCceeeec
Q 007787 323 KLLNLGTIVLE--EYPAGIN-LLLLLKYLKLNIPYLK--HLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR 397 (589)
Q Consensus 323 r~L~L~~n~l~--~~p~~~~-~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~ 397 (589)
|.||++|...- .-|..++ .+|.|+.|.+++-.+. ++-.-..+++||..||+|++.++.+ .++++|++|+.|
T Consensus 125 ~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L--- 200 (699)
T KOG3665|consen 125 QHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL--- 200 (699)
T ss_pred hhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH---
Confidence 55777775522 3444444 3677777777765443 2222334667777777777766665 455555555554
Q ss_pred CcccCCcccccCCCCcccccccccC-CCCchhhhhcCcccCCCCCCeEEEeeCC--CCCCCCceecCCC-CCCCCCccEE
Q 007787 398 TITLPAHPGKFCTSLENLNFISVLH-PSSCTRDILGRLPSEFELLESLKLVNEL--KIPSQLSSIVLPE-YQFPPSLIEL 473 (589)
Q Consensus 398 ~~~lp~~i~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp~~L~~L~lp~-~~~l~~L~~L 473 (589)
.+.+... ....+.+ +. .|++|+.||+|... ..+..++ ..-+ -..+|+|+.|
T Consensus 201 ------------------~mrnLe~e~~~~l~~-LF----~L~~L~vLDIS~~~~~~~~~ii~--qYlec~~~LpeLrfL 255 (699)
T KOG3665|consen 201 ------------------SMRNLEFESYQDLID-LF----NLKKLRVLDISRDKNNDDTKIIE--QYLECGMVLPELRFL 255 (699)
T ss_pred ------------------hccCCCCCchhhHHH-Hh----cccCCCeeeccccccccchHHHH--HHHHhcccCccccEE
Confidence 4333332 1223333 43 56677777776521 0000000 0001 2246677777
Q ss_pred EEEeecCCCCCCCCc-ccccccceeE
Q 007787 474 SLANTELRDDPMPKP-KKLLHLQVLK 498 (589)
Q Consensus 474 ~L~~n~l~~~~~~~l-~~l~~L~~L~ 498 (589)
|.+++.+.+...+.+ ..-|+|+.+.
T Consensus 256 DcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 256 DCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ecCCcchhHHHHHHHHHhCccHhhhh
Confidence 777776655443332 2334444444
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.44 E-value=0.00027 Score=72.74 Aligned_cols=129 Identities=21% Similarity=0.239 Sum_probs=74.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecC-CccccchhhcCCCCccEEEecCC-ccccccccccccccCceeeecCcc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIP-YLKHLPASLCNLLNLYTIDMPSS-YVRCTPDSIGKMHELRHLNFRTIT 400 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~~~~L~~L~~L~l~~~~ 400 (589)
+.|++++|.++.+|. + -.+|+.|.++++ .++.+|..+. .+|+.|++++| .+..+|.. |+.|+++...
T Consensus 55 ~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~ 123 (426)
T PRK15386 55 GRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSA 123 (426)
T ss_pred CEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCC
Confidence 579999998888882 2 246999999874 5667776553 58999999998 77778754 5555555221
Q ss_pred cCCcccccC-CCCcccccccccCCCCchhhhhcCcccCC-CCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEee
Q 007787 401 LPAHPGKFC-TSLENLNFISVLHPSSCTRDILGRLPSEF-ELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANT 478 (589)
Q Consensus 401 lp~~i~~~l-~~L~~L~l~~~~~~~~~~~~~l~~L~~~l-~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n 478 (589)
.+ .+. .+ ++|+.|.+.+++.. .... +.. .+ ++|+.|+++++..+ .+|. .-..+|+.|+++.|
T Consensus 124 ~~-~L~-~LPssLk~L~I~~~n~~--~~~~-lp~---~LPsSLk~L~Is~c~~i-------~LP~-~LP~SLk~L~ls~n 187 (426)
T PRK15386 124 TD-SIK-NVPNGLTSLSINSYNPE--NQAR-IDN---LISPSLKTLSLTGCSNI-------ILPE-KLPESLQSITLHIE 187 (426)
T ss_pred Cc-ccc-cCcchHhheeccccccc--cccc-ccc---ccCCcccEEEecCCCcc-------cCcc-cccccCcEEEeccc
Confidence 11 122 22 35566664332210 0011 110 12 57888888764311 2232 11257777787765
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=6.9e-05 Score=83.36 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=59.0
Q ss_pred cEEEEcCCCCc--cCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccc--cccccccccCceeeec
Q 007787 323 KLLNLGTIVLE--EYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCT--PDSIGKMHELRHLNFR 397 (589)
Q Consensus 323 r~L~L~~n~l~--~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l--p~~~~~L~~L~~L~l~ 397 (589)
|.|.+++-.+. .+..-..++++|+.||+|+++++.+ ..+++|+||++|.+++=.+..- -..+.+|++|++||+|
T Consensus 151 ~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 151 RSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred ceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecc
Confidence 66888887765 4444556899999999999999988 6799999999999987655432 2356779999999998
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.30 E-value=0.00085 Score=69.18 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=80.2
Q ss_pred cCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCC-ccccccccccccccCceeeecCc-ccCCcccccCCCCcccc
Q 007787 339 INLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSS-YVRCTPDSIGKMHELRHLNFRTI-TLPAHPGKFCTSLENLN 416 (589)
Q Consensus 339 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~~~~L~~L~~L~l~~~-~lp~~i~~~l~~L~~L~ 416 (589)
+..+.++++|++++|.++.+|. --.+|++|.+++| .+..+|..+. ++|++|+++.. .++. -..+|+.|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s----LP~sLe~L~ 118 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG----LPESVRSLE 118 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc----cccccceEE
Confidence 3457899999999999998882 2246999999987 7788886553 67888888732 2221 123455555
Q ss_pred cccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCCCCCCcccccccce
Q 007787 417 FISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQV 496 (589)
Q Consensus 417 l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 496 (589)
+..+.. .. +..+| ++|+.|.+.+.... ... .+|. .-+++|+.|++++|.... .|+.+. .+|+.
T Consensus 119 L~~n~~-----~~-L~~LP---ssLk~L~I~~~n~~--~~~--~lp~-~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~ 181 (426)
T PRK15386 119 IKGSAT-----DS-IKNVP---NGLTSLSINSYNPE--NQA--RIDN-LISPSLKTLSLTGCSNII-LPEKLP--ESLQS 181 (426)
T ss_pred eCCCCC-----cc-cccCc---chHhheeccccccc--ccc--cccc-ccCCcccEEEecCCCccc-Cccccc--ccCcE
Confidence 322111 12 33222 34555555331100 000 1111 123689999999888542 333332 58888
Q ss_pred eEEecCc
Q 007787 497 LKLKKNS 503 (589)
Q Consensus 497 L~L~~n~ 503 (589)
|.++.+.
T Consensus 182 L~ls~n~ 188 (426)
T PRK15386 182 ITLHIEQ 188 (426)
T ss_pred EEecccc
Confidence 9986653
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.12 E-value=3.4e-05 Score=82.49 Aligned_cols=96 Identities=20% Similarity=0.166 Sum_probs=75.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchh-hcCCCCccEEEecCCccccccccccccccCceeeecCccc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPAS-LCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITL 401 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~l 401 (589)
+.|+|+.|+++..- .+..|++|+.|||++|.+..+|.- ...+. |+.|++++|.++.+ .++.+|.+|+.||++.+-+
T Consensus 190 e~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 190 ESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred hhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccchhHhhh
Confidence 67999999998665 788999999999999999988852 22344 99999999988888 5789999999999982222
Q ss_pred C-----CcccccCCCCcccccccccC
Q 007787 402 P-----AHPGKFCTSLENLNFISVLH 422 (589)
Q Consensus 402 p-----~~i~~~l~~L~~L~l~~~~~ 422 (589)
. ..++ .|..|..|++.+|..
T Consensus 267 ~~hseL~pLw-sLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 267 SEHSELEPLW-SLSSLIVLWLEGNPL 291 (1096)
T ss_pred hcchhhhHHH-HHHHHHHHhhcCCcc
Confidence 1 1245 677888888776653
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=7.7e-05 Score=71.85 Aligned_cols=207 Identities=13% Similarity=0.102 Sum_probs=112.4
Q ss_pred CCCCCEEEeecCCccccch--hhc-CCCCccEEEecCCcccc---ccccccccccCceeeecCcccCCcccccC----CC
Q 007787 342 LLLLKYLKLNIPYLKHLPA--SLC-NLLNLYTIDMPSSYVRC---TPDSIGKMHELRHLNFRTITLPAHPGKFC----TS 411 (589)
Q Consensus 342 l~~Lr~L~L~~~~i~~lp~--~i~-~L~~L~~L~L~~~~l~~---lp~~~~~L~~L~~L~l~~~~lp~~i~~~l----~~ 411 (589)
+.-+..|-+.++.|...-. .++ ..+.++.|||.+|.|.. +-.-+.+|+.|+.|+++.+.+...|+ .+ .+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccc
Confidence 3344466677776653322 233 57789999999997754 44446678888999888555544454 43 45
Q ss_pred CcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCC-CCccEEEEEeecCCC--CCCC
Q 007787 412 LENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFP-PSLIELSLANTELRD--DPMP 486 (589)
Q Consensus 412 L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l-~~L~~L~L~~n~l~~--~~~~ 486 (589)
|++|-+.+...........+. .++.++.|+++.|. ++.+.+.+ .... +.+.+|++..|...- ....
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~----~lP~vtelHmS~N~-----~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~ 193 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLD----DLPKVTELHMSDNS-----LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK 193 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhh----cchhhhhhhhccch-----hhhhccccccccccchhhhhhhcCCcHHHHHHHHHh
Confidence 666654443333333332122 56667777776641 22111111 1111 123333333332100 0000
Q ss_pred CcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCC--ccccccCCCCCEEEEeCC
Q 007787 487 KPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRL--PEDLWRVKSLTKLELWWP 564 (589)
Q Consensus 487 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~l--p~~l~~l~~L~~L~l~~~ 564 (589)
.-.-+|++..+.+..|.+....- ......+|.+..|+|+.+.+ ++. -+.+..+++|..|.+.++
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~-------------ek~se~~p~~~~LnL~~~~i-dswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESS-------------EKGSEPFPSLSCLNLGANNI-DSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred HHhhcccchheeeecCcccchhh-------------cccCCCCCcchhhhhccccc-ccHHHHHHHcCCchhheeeccCC
Confidence 01124666667776665543321 11334567777888888876 332 235778999999999999
Q ss_pred cHHHHHHHhh
Q 007787 565 RFELRERLRK 574 (589)
Q Consensus 565 ~~~~~~~~~~ 574 (589)
| +.+.++.
T Consensus 260 P--l~d~l~~ 267 (418)
T KOG2982|consen 260 P--LSDPLRG 267 (418)
T ss_pred c--ccccccC
Confidence 9 5555543
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.04 E-value=2.1e-05 Score=74.65 Aligned_cols=176 Identities=17% Similarity=0.147 Sum_probs=102.9
Q ss_pred EEEEcCCCCc-----cCCcccCCCCCCCEEEeecCCcc----ccch-------hhcCCCCccEEEecCCcc-cccccc--
Q 007787 324 LLNLGTIVLE-----EYPAGINLLLLLKYLKLNIPYLK----HLPA-------SLCNLLNLYTIDMPSSYV-RCTPDS-- 384 (589)
Q Consensus 324 ~L~L~~n~l~-----~~p~~~~~l~~Lr~L~L~~~~i~----~lp~-------~i~~L~~L~~L~L~~~~l-~~lp~~-- 384 (589)
-++||||.|. .+...+.+-.+|+..+++.--.. ++|+ .+-++++|+..+||+|-+ ...|+.
T Consensus 34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~ 113 (388)
T COG5238 34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG 113 (388)
T ss_pred EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence 3889999876 34456667788888888763221 4443 456788899999999844 233333
Q ss_pred --ccccccCceeeecCccc-C-------Cc---------ccccCCCCcccccccccC-CCCchhh--hhcCcccCCCCCC
Q 007787 385 --IGKMHELRHLNFRTITL-P-------AH---------PGKFCTSLENLNFISVLH-PSSCTRD--ILGRLPSEFELLE 442 (589)
Q Consensus 385 --~~~L~~L~~L~l~~~~l-p-------~~---------i~~~l~~L~~L~l~~~~~-~~~~~~~--~l~~L~~~l~~L~ 442 (589)
+++-+.|.||.++.+.+ | .. .. .-+.|++.....+.. .+..-.. .+. .-.+|+
T Consensus 114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa-~kp~Le~vicgrNRlengs~~~~a~~l~----sh~~lk 188 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAA-DKPKLEVVICGRNRLENGSKELSAALLE----SHENLK 188 (388)
T ss_pred HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhc-cCCCceEEEeccchhccCcHHHHHHHHH----hhcCce
Confidence 56667888888882111 1 11 11 345677666444433 2221111 021 225888
Q ss_pred eEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCCCC----CCcccccccceeEEecCcc
Q 007787 443 SLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDDPM----PKPKKLLHLQVLKLKKNSF 504 (589)
Q Consensus 443 ~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~~ 504 (589)
.+.+..||+-|.....|.+-.+..+.+|+.|+|.+|.++-... ..+..++.|+.|.+..|-+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 8888888755543332200013456788888888888754322 2345667788888855444
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.03 E-value=7.3e-05 Score=63.93 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=67.8
Q ss_pred EEEEcCCCCccCCcccCC-CCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec
Q 007787 324 LLNLGTIVLEEYPAGINL-LLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR 397 (589)
Q Consensus 324 ~L~L~~n~l~~~p~~~~~-l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~ 397 (589)
..+|++|.+..+|+.|.. .+.++.|+|++|.|+.+|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+..
T Consensus 57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 479999999999988775 45899999999999999999999999999999999999999999889999999887
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.0011 Score=60.80 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=44.2
Q ss_pred EEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhc-CCCCccEEEecCCccccccc--cccccccCceeeec
Q 007787 324 LLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLC-NLLNLYTIDMPSSYVRCTPD--SIGKMHELRHLNFR 397 (589)
Q Consensus 324 ~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~lp~--~~~~L~~L~~L~l~ 397 (589)
.+||++|.+..++ .|..++.|..|.|++|+|+.+-+.+. .+++|.+|.|.+|+|.++-+ .+..+++|++|.+-
T Consensus 46 ~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 46 AIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred eecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4677777765443 35567777777777777776655554 35667777777776655421 23445555555443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.83 E-value=0.0021 Score=58.83 Aligned_cols=108 Identities=21% Similarity=0.210 Sum_probs=78.4
Q ss_pred CCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCC
Q 007787 438 FELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFP 517 (589)
Q Consensus 438 l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~ 517 (589)
+.+...++++.|+ +. .++.|..+++|.+|.|.+|.|+...|..-.-+|+|+.|.+.+|++....
T Consensus 41 ~d~~d~iDLtdNd-----l~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~--------- 104 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-----LR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG--------- 104 (233)
T ss_pred ccccceecccccc-----hh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh---------
Confidence 4456667777653 11 2333667899999999999998777766667799999999999875432
Q ss_pred CCCccccCcccccccceeeEeecCCCCCC---ccccccCCCCCEEEEeCCc
Q 007787 518 SLKEWIVEFEAIPKLESLIINPCAHLKRL---PEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 518 ~L~~l~~~~~~l~~L~~L~L~~n~~l~~l---p~~l~~l~~L~~L~l~~~~ 565 (589)
++ ..+..+|+|++|.+-+|+....- --.+..+|+|+.|++.+.-
T Consensus 105 ---dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 105 ---DL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ---hc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 00 13457899999999999985431 1235679999999999876
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.42 E-value=0.00012 Score=73.83 Aligned_cols=111 Identities=21% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCCCCCccEEEEEeecC-CCCCCCCcc-cccccceeEEecCccc-CceeeEecCCCCCCCcc----------------cc
Q 007787 464 YQFPPSLIELSLANTEL-RDDPMPKPK-KLLHLQVLKLKKNSFI-GRKLICRFGCFPSLKEW----------------IV 524 (589)
Q Consensus 464 ~~~l~~L~~L~L~~n~l-~~~~~~~l~-~l~~L~~L~L~~n~~~-~~~~~~~~~~f~~L~~l----------------~~ 524 (589)
..+.++|+.|-++.|+. +..-...++ +.+.|+.+++...... ...+.....++|.|+.+ ..
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 34678899999988873 222222233 5677777777543321 11122223344444221 11
Q ss_pred CcccccccceeeEeecCCCCC-CccccccCCCCCEEEEeCCcHHHHHHHhh
Q 007787 525 EFEAIPKLESLIINPCAHLKR-LPEDLWRVKSLTKLELWWPRFELRERLRK 574 (589)
Q Consensus 525 ~~~~l~~L~~L~L~~n~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~~ 574 (589)
.-.++..|+.+.+++|+.+.. .-..+..+++|+.+++.+|..-..+.+.+
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 224677888888888887643 22345667889999999888666665554
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.39 E-value=0.00038 Score=70.21 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=26.4
Q ss_pred cccccccceeeEeecCCCCCC--ccccccCCCCCEEEEeC
Q 007787 526 FEAIPKLESLIINPCAHLKRL--PEDLWRVKSLTKLELWW 563 (589)
Q Consensus 526 ~~~l~~L~~L~L~~n~~l~~l--p~~l~~l~~L~~L~l~~ 563 (589)
+...++|+.+++-+|.....- -..-.++|+++...+..
T Consensus 422 l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred HhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 456789999999999865432 22345788888766544
No 64
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.37 E-value=0.047 Score=57.48 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=90.2
Q ss_pred CCCCccccchhhHHHHHHHHHcC--CCCceEEEEEE---------------ee----CCceEEEEEE----eCCHHHHHH
Q 007787 91 QRDNMMSLQDDAMVELLDQLIEG--PLQLSVVAIID---------------SF----ILIVHAWVSF----DTDPGTMLD 145 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~~--~~~~~vi~IvG---------------~F----~~~~~~wv~v----~~~~~~i~~ 145 (589)
.++.++||+++ .+++...|... +.....+-|+| +. . ...|+.+ ..+...++.
T Consensus 28 ~P~~l~~Re~e-~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~--~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQ-IEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAV--KVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHH-HHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEECCcCCCHHHHHH
Confidence 45679999999 99999998432 22334566888 11 2 2345555 346678899
Q ss_pred HHHHHhCCCCccccccccCHHHHHHHHHHHcC--CceEEEEEecCCChh------hHHHHhhhcCCCCCCcE--EEEecc
Q 007787 146 NILKYVMPQSAFREILYKDFEKRKTALHDYLK--NKRYLIVLYDVFTND------VWDYLGEALPDHQNGSR--VLVILF 215 (589)
Q Consensus 146 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~~------~w~~l~~~l~~~~~gs~--IivTTR 215 (589)
+|+.++..... + ....+.+++...+.+.+. ++..+||||+++... .+..+...... ..+++ ||.++.
T Consensus 105 ~i~~~l~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~ 181 (394)
T PRK00411 105 EIARQLFGHPP-P-SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISS 181 (394)
T ss_pred HHHHHhcCCCC-C-CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEEC
Confidence 99999875211 0 123355677777888776 356899999998642 34444333222 23444 455555
Q ss_pred cCcE----------------EecCCCChHHHHHhhcccc
Q 007787 216 DDEI----------------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 216 ~~~v----------------~~l~~L~~~~~~~Lf~~~a 238 (589)
...+ +.+.+++.++..+++..++
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 4332 6888999999988887664
No 65
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.26 E-value=0.053 Score=53.76 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=72.0
Q ss_pred eCCHHHHHHHHHHHhCCCCccccccccCHHHHHHHHHH----H-cCCceEEEEEecCCCh--hhHHHHhhhcCC---CCC
Q 007787 137 DTDPGTMLDNILKYVMPQSAFREILYKDFEKRKTALHD----Y-LKNKRYLIVLYDVFTN--DVWDYLGEALPD---HQN 206 (589)
Q Consensus 137 ~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~----~-L~~kr~LlVLDDvw~~--~~w~~l~~~l~~---~~~ 206 (589)
..+..++++.|...++.... ..+...+...+.+ . ..++++++|+||+|.. ..++.+...... +..
T Consensus 81 ~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~ 155 (269)
T TIGR03015 81 RVDAEDLLRMVAADFGLETE-----GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAK 155 (269)
T ss_pred CCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCC
Confidence 67888899999988865432 2222333333333 2 3678899999999985 466766543221 122
Q ss_pred CcEEEEecccC--------cE----------EecCCCChHHHHHhhccccCCCC----CC------------CCCCchhh
Q 007787 207 GSRVLVILFDD--------EI----------FNLCILENEDMINLDSVPATPLR----AT------------YQERPLVC 252 (589)
Q Consensus 207 gs~IivTTR~~--------~v----------~~l~~L~~~~~~~Lf~~~a~~~~----~~------------c~glPlai 252 (589)
...|++|.... .. +++.+++.+|..+++...+.... .. |+|.|..+
T Consensus 156 ~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i 235 (269)
T TIGR03015 156 LLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLI 235 (269)
T ss_pred eEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHH
Confidence 22445554321 11 78999999999888776542111 11 99999988
Q ss_pred hcccc
Q 007787 253 LYYGS 257 (589)
Q Consensus 253 ~~~g~ 257 (589)
..++.
T Consensus 236 ~~l~~ 240 (269)
T TIGR03015 236 NILCD 240 (269)
T ss_pred HHHHH
Confidence 77776
No 66
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.21 E-value=0.039 Score=64.92 Aligned_cols=192 Identities=10% Similarity=0.067 Sum_probs=114.0
Q ss_pred HHHHHHHHHcCCCCceEEEEEE---------------eeCCceEEEEEE---eCCHHHHHHHHHHHhCCCCcc--cc---
Q 007787 103 MVELLDQLIEGPLQLSVVAIID---------------SFILIVHAWVSF---DTDPGTMLDNILKYVMPQSAF--RE--- 159 (589)
Q Consensus 103 ~~~i~~~L~~~~~~~~vi~IvG---------------~F~~~~~~wv~v---~~~~~~i~~~il~~l~~~~~~--~~--- 159 (589)
+.++.+.|... ...+++-|.| .++ ..+|+++ +-+...+...++..+...... +.
T Consensus 19 R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~~~--~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~ 95 (903)
T PRK04841 19 RERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAGKN--NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEA 95 (903)
T ss_pred chHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHhCC--CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhh
Confidence 44555555432 3577888888 566 7999999 456667777777777421110 00
Q ss_pred ----ccccCHHHHHHHHHHHcC--CceEEEEEecCCCh--hh-HHHHhhhcCCCCCCcEEEEecccCcE-----------
Q 007787 160 ----ILYKDFEKRKTALHDYLK--NKRYLIVLYDVFTN--DV-WDYLGEALPDHQNGSRVLVILFDDEI----------- 219 (589)
Q Consensus 160 ----~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~--~~-w~~l~~~l~~~~~gs~IivTTR~~~v----------- 219 (589)
....+...+...+-..+. +.+++|||||+-.. .. .+.+...+.....+-++|||||...-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~ 175 (903)
T PRK04841 96 LAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQ 175 (903)
T ss_pred hhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCc
Confidence 011222333444444443 57899999999543 22 33444444444556788899998431
Q ss_pred -EecC----CCChHHHHHhhccccCCCCCC---------CCCCchhhhcccch--hHhhcc-chhhhhcc--CCCc----
Q 007787 220 -FNLC----ILENEDMINLDSVPATPLRAT---------YQERPLVCLYYGSE--SLAENM-KLTWLIRK--RSPL---- 276 (589)
Q Consensus 220 -~~l~----~L~~~~~~~Lf~~~a~~~~~~---------c~glPlai~~~g~~--~~~~~~-~~~~~~~~--~~~l---- 276 (589)
..+. +|+.+|+-.+|.......-.. |+|.|+++..++.. .-..+. ...+.+.. ...+
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 255 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYL 255 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHH
Confidence 3445 899999999998765443222 99999999877651 000000 01122211 1111
Q ss_pred --eecCCCCcchhhHhhhccccC
Q 007787 277 --FSIAQLPQRLKLCCLYLSACR 297 (589)
Q Consensus 277 --lsy~~L~~~lk~cfl~~~~fp 297 (589)
--++.||...+..+...++++
T Consensus 256 ~~~v~~~l~~~~~~~l~~~a~~~ 278 (903)
T PRK04841 256 VEEVLDNVDLETRHFLLRCSVLR 278 (903)
T ss_pred HHHHHhcCCHHHHHHHHHhcccc
Confidence 247889999998888888876
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0037 Score=35.83 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=7.8
Q ss_pred CCEEEeecCCccccchh
Q 007787 345 LKYLKLNIPYLKHLPAS 361 (589)
Q Consensus 345 Lr~L~L~~~~i~~lp~~ 361 (589)
|++|+|++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.0053 Score=35.19 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=18.7
Q ss_pred CccEEEecCCcccccccccccc
Q 007787 367 NLYTIDMPSSYVRCTPDSIGKM 388 (589)
Q Consensus 367 ~L~~L~L~~~~l~~lp~~~~~L 388 (589)
+|++||+++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 69
>PF05729 NACHT: NACHT domain
Probab=95.53 E-value=0.048 Score=49.31 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=44.9
Q ss_pred CCceEEEEEecCCChh---------hHHHHhh-hcCC-CCCCcEEEEecccCcE------------EecCCCChHHHHHh
Q 007787 177 KNKRYLIVLYDVFTND---------VWDYLGE-ALPD-HQNGSRVLVILFDDEI------------FNLCILENEDMINL 233 (589)
Q Consensus 177 ~~kr~LlVLDDvw~~~---------~w~~l~~-~l~~-~~~gs~IivTTR~~~v------------~~l~~L~~~~~~~L 233 (589)
+.+++++|+|++.+.. .+..+.. -++. ..++.+|+||+|.... +.+.++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 5689999999986542 1333332 2332 2568999999998776 89999999999988
Q ss_pred hccc
Q 007787 234 DSVP 237 (589)
Q Consensus 234 f~~~ 237 (589)
+.+.
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.0024 Score=61.29 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=63.3
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccc--cccccccCceeeec---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPD--SIGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~--~~~~L~~L~~L~l~--- 397 (589)
+-|++.||.++.+. -..+|+.|+.|.||-|+|+.|. .+..+++|+.|.|+.|.|..+.+ -+.++++|+.|-|.
T Consensus 22 kKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 22 KKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 44777888877442 2347888999999999988874 37788899999999887776643 36677888888776
Q ss_pred -CcccCCc-----ccccCCCCcccc
Q 007787 398 -TITLPAH-----PGKFCTSLENLN 416 (589)
Q Consensus 398 -~~~lp~~-----i~~~l~~L~~L~ 416 (589)
.+.-+.. +. .|++|+.|+
T Consensus 100 Cc~~ag~nYR~~VLR-~LPnLkKLD 123 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLR-VLPNLKKLD 123 (388)
T ss_pred cccccchhHHHHHHH-Hcccchhcc
Confidence 1111111 34 577777776
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.28 E-value=0.01 Score=56.74 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=41.2
Q ss_pred EEEcCCCCccCCcccCCCCCCCEEEeecC--Ccc-ccchhhcCCCCccEEEecCCcccccc--ccccccccCceeeec
Q 007787 325 LNLGTIVLEEYPAGINLLLLLKYLKLNIP--YLK-HLPASLCNLLNLYTIDMPSSYVRCTP--DSIGKMHELRHLNFR 397 (589)
Q Consensus 325 L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~l~~lp--~~~~~L~~L~~L~l~ 397 (589)
|++.++.++.+. .+..|++|++|.++.| .+. .++....++++|++|++++|++..+- ..+..+.+|..|++.
T Consensus 48 ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 48 LSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF 124 (260)
T ss_pred hhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence 445555544322 3455778888888888 444 45544556688888888888665421 123344455555554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.86 E-value=0.0032 Score=68.02 Aligned_cols=221 Identities=19% Similarity=0.141 Sum_probs=107.9
Q ss_pred CCCCCEEEeecC-Cccc--cchhhcCCCCccEEEecCC--ccccc----cccccccccCceeeecCcc-cCC-c---ccc
Q 007787 342 LLLLKYLKLNIP-YLKH--LPASLCNLLNLYTIDMPSS--YVRCT----PDSIGKMHELRHLNFRTIT-LPA-H---PGK 407 (589)
Q Consensus 342 l~~Lr~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~--~l~~l----p~~~~~L~~L~~L~l~~~~-lp~-~---i~~ 407 (589)
++.|+.|.+..+ .+.. +-.....+++|+.|+++++ .+... +.....+.+|+.|+++... +.+ + +..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555544 2332 2223345566666666552 11111 1123334556666665211 111 1 221
Q ss_pred cCCCCcccccccccC-CCCchhhhhcCcccCCCCCCeEEEeeCCCC-----------CCCCceecCCCCCCCCCccEEEE
Q 007787 408 FCTSLENLNFISVLH-PSSCTRDILGRLPSEFELLESLKLVNELKI-----------PSQLSSIVLPEYQFPPSLIELSL 475 (589)
Q Consensus 408 ~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~~l~~L~~L~l~~~~~l-----------p~~L~~L~lp~~~~l~~L~~L~L 475 (589)
.+++|++|.+..+.. +...+.. +. ..+++|++|++++...+ .++|+.|.+.....++.++.+.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~-i~---~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l 342 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVS-IA---ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSL 342 (482)
T ss_pred hCCCcceEccCCCCccchhHHHH-HH---HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence 356677766444442 3334444 33 26677777777763211 11222110111222344555555
Q ss_pred EeecCCC---CCCCCcccccccceeEEecCcccCceeeEecCCCCCC-CccccCcccccccceeeEeecCCCCCCc-ccc
Q 007787 476 ANTELRD---DPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL-KEWIVEFEAIPKLESLIINPCAHLKRLP-EDL 550 (589)
Q Consensus 476 ~~n~l~~---~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L-~~l~~~~~~l~~L~~L~L~~n~~l~~lp-~~l 550 (589)
..+.... ...-.+..+++|+.+.+..+............++|.| ..+.........++.|+++.|.....-- ...
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~ 422 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCL 422 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHH
Confidence 5443211 1222345778888888877664333323445677776 4444444445558999999988754311 111
Q ss_pred cc-CCCCCEEEEeCCcH
Q 007787 551 WR-VKSLTKLELWWPRF 566 (589)
Q Consensus 551 ~~-l~~L~~L~l~~~~~ 566 (589)
.. ...+..+++.+|+.
T Consensus 423 ~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 423 ADSCSNLKDLDLSGCRV 439 (482)
T ss_pred hhhhhccccCCccCccc
Confidence 11 66788888888873
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.0031 Score=60.49 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=46.4
Q ss_pred CCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCcccCCc-----ccccCCCCcccc
Q 007787 342 LLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITLPAH-----PGKFCTSLENLN 416 (589)
Q Consensus 342 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~-----i~~~l~~L~~L~ 416 (589)
+.+.+.|++.++.+..+. -..+++.|++|.|+-|+|+.+ ..+..+++|+.|+|..+.++.. +. ++++|++|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLk-nlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLK-NLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHh-cCchhhhHh
Confidence 445566666666666542 234567777777777777666 3456667777777764444432 34 666677776
Q ss_pred ccccc
Q 007787 417 FISVL 421 (589)
Q Consensus 417 l~~~~ 421 (589)
+..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 55543
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.57 E-value=0.017 Score=55.25 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=73.1
Q ss_pred CCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEee--cCCCCCCCCcccccccceeEEecCcccCceeeEecC
Q 007787 437 EFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANT--ELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFG 514 (589)
Q Consensus 437 ~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 514 (589)
.+.+|+.|++.+.+ |. ++..+..+++|++|.++.| +..+..+.....+|+|++|++++|.+....
T Consensus 41 ~~~~le~ls~~n~g-----lt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls------ 107 (260)
T KOG2739|consen 41 EFVELELLSVINVG-----LT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS------ 107 (260)
T ss_pred cccchhhhhhhccc-----ee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc------
Confidence 55667777666543 11 1222557889999999999 665555555567799999999999885422
Q ss_pred CCCCCCccccCcccccccceeeEeecCCCCCCc---cccccCCCCCEEEEeCCc
Q 007787 515 CFPSLKEWIVEFEAIPKLESLIINPCAHLKRLP---EDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 515 ~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp---~~l~~l~~L~~L~l~~~~ 565 (589)
.+ .....+++|..|++.+|.-...-- ..|.-+++|+.|+-.++.
T Consensus 108 ------tl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 108 ------TL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred ------cc-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 00 133467789999999998765221 135567899888876654
No 75
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.47 E-value=0.75 Score=47.78 Aligned_cols=143 Identities=15% Similarity=0.019 Sum_probs=83.9
Q ss_pred CCCccccchhhHHHHHHHHHc--CCCCceEEEEEE---------------ee----CC--ceEEEEEE----eCCHHHHH
Q 007787 92 RDNMMSLQDDAMVELLDQLIE--GPLQLSVVAIID---------------SF----IL--IVHAWVSF----DTDPGTML 144 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~--~~~~~~vi~IvG---------------~F----~~--~~~~wv~v----~~~~~~i~ 144 (589)
++.++||+++ .++|..+|.. .+.....+-|+| ++ ++ ....++.+ ..+...++
T Consensus 14 p~~l~gRe~e-~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 14 PDRIVHRDEQ-IEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCcHHH-HHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 4589999999 9999999864 122345677888 11 10 00234444 33567899
Q ss_pred HHHHHHhCC---CCccccccccCHHHHHHHHHHHcC--CceEEEEEecCCChh-----hHHHHhhhc-CCCCCCc--EEE
Q 007787 145 DNILKYVMP---QSAFREILYKDFEKRKTALHDYLK--NKRYLIVLYDVFTND-----VWDYLGEAL-PDHQNGS--RVL 211 (589)
Q Consensus 145 ~~il~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~~-----~w~~l~~~l-~~~~~gs--~Ii 211 (589)
..|++++.. ..+ ....+..++...+.+.+. +++++||||+++.-. ....+.... .....++ .+|
T Consensus 93 ~~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 93 VELANQLRGSGEEVP---TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHhhcCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 999999842 111 122344555666666664 568899999997661 123332221 1111222 334
Q ss_pred EecccCc----------------EEecCCCChHHHHHhhcccc
Q 007787 212 VILFDDE----------------IFNLCILENEDMINLDSVPA 238 (589)
Q Consensus 212 vTTR~~~----------------v~~l~~L~~~~~~~Lf~~~a 238 (589)
.+|+... ++.+.+.+.++..+++..++
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 4443322 16788889888888887764
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.70 E-value=0.041 Score=29.25 Aligned_cols=15 Identities=27% Similarity=0.436 Sum_probs=5.6
Q ss_pred CccEEEecCCccccc
Q 007787 367 NLYTIDMPSSYVRCT 381 (589)
Q Consensus 367 ~L~~L~L~~~~l~~l 381 (589)
+|++|++++|.+.++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.64 E-value=0.048 Score=28.98 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=11.5
Q ss_pred CCCCEEEeecCCccccc
Q 007787 343 LLLKYLKLNIPYLKHLP 359 (589)
Q Consensus 343 ~~Lr~L~L~~~~i~~lp 359 (589)
++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 57999999999998876
No 78
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.32 E-value=0.14 Score=49.20 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=20.0
Q ss_pred ccccchhhHHHHHHHHHcCCCCceEEEEEE
Q 007787 95 MMSLQDDAMVELLDQLIEGPLQLSVVAIID 124 (589)
Q Consensus 95 ~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG 124 (589)
++||+.+ .++|.+++..+. ...+.|+|
T Consensus 1 F~gR~~e-l~~l~~~l~~~~--~~~~~l~G 27 (234)
T PF01637_consen 1 FFGREKE-LEKLKELLESGP--SQHILLYG 27 (234)
T ss_dssp S-S-HHH-HHHHHHCHHH----SSEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHhhc--CcEEEEEc
Confidence 4899999 999999998753 56888999
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.99 E-value=0.0039 Score=58.34 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=63.1
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~ 397 (589)
.+||++.|++..+-..|+.+..|..|+++.|.+..+|...+.+..+..+++..|..+.+|.++++++.++++++.
T Consensus 45 tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 45 TVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 568888888877777788888888888888888888888888888888888888888888888888888888876
No 80
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=91.38 E-value=1.9 Score=43.72 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=52.5
Q ss_pred CceEEEEEe-cCCChhhHHHHhhhcCCCCCCcEEEEecccCcE-----------EecCCCChHHHHHhhccccCCCCCC-
Q 007787 178 NKRYLIVLY-DVFTNDVWDYLGEALPDHQNGSRVLVILFDDEI-----------FNLCILENEDMINLDSVPATPLRAT- 244 (589)
Q Consensus 178 ~kr~LlVLD-Dvw~~~~w~~l~~~l~~~~~gs~IivTTR~~~v-----------~~l~~L~~~~~~~Lf~~~a~~~~~~- 244 (589)
++|++||=| |.++.+.|+.+...+..-..++.+|++|.+.+. +++.++++++......+...+....
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 172 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDIKEEE 172 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCCCHHH
Confidence 456555555 556778899999998877778898888865433 9999999999877776543221111
Q ss_pred -------CCCCchhhh
Q 007787 245 -------YQERPLVCL 253 (589)
Q Consensus 245 -------c~glPlai~ 253 (589)
|+|.|..+.
T Consensus 173 ~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 173 KKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 777775443
No 81
>PF13173 AAA_14: AAA domain
Probab=91.20 E-value=0.34 Score=41.99 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHHHHcCCceEEEEEecCCChhhHHHHhhhcCCCCCCcEEEEecccCcE---------------EecCCCChHH
Q 007787 169 KTALHDYLKNKRYLIVLYDVFTNDVWDYLGEALPDHQNGSRVLVILFDDEI---------------FNLCILENED 229 (589)
Q Consensus 169 ~~~l~~~L~~kr~LlVLDDvw~~~~w~~l~~~l~~~~~gs~IivTTR~~~v---------------~~l~~L~~~~ 229 (589)
.+.+.+....++.+|+||++-....|......+.+.....+|++|+..... ++|.+|+-.|
T Consensus 51 ~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 51 LEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 344555544578889999999888888888777776667899999987554 6777777655
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.51 E-value=0.22 Score=29.65 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=10.6
Q ss_pred CCCCEEEeecCCccccchh
Q 007787 343 LLLKYLKLNIPYLKHLPAS 361 (589)
Q Consensus 343 ~~Lr~L~L~~~~i~~lp~~ 361 (589)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555555655555555543
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.51 E-value=0.22 Score=29.65 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=10.6
Q ss_pred CCCCEEEeecCCccccchh
Q 007787 343 LLLKYLKLNIPYLKHLPAS 361 (589)
Q Consensus 343 ~~Lr~L~L~~~~i~~lp~~ 361 (589)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555555655555555543
No 84
>PRK06893 DNA replication initiation factor; Validated
Probab=90.21 E-value=0.17 Score=48.96 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=41.8
Q ss_pred EEEEEecCCCh---hhHHH-HhhhcCCC-CCCcEEEEecccC----------cE---------EecCCCChHHHHHhhcc
Q 007787 181 YLIVLYDVFTN---DVWDY-LGEALPDH-QNGSRVLVILFDD----------EI---------FNLCILENEDMINLDSV 236 (589)
Q Consensus 181 ~LlVLDDvw~~---~~w~~-l~~~l~~~-~~gs~IivTTR~~----------~v---------~~l~~L~~~~~~~Lf~~ 236 (589)
-+|||||+|.. ..|+. +...+... ..|+.|+|+|.+. .+ +++++++.++.++++++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 48999999974 46763 33334322 3466665555443 22 89999999999999998
Q ss_pred ccCCC
Q 007787 237 PATPL 241 (589)
Q Consensus 237 ~a~~~ 241 (589)
+++..
T Consensus 173 ~a~~~ 177 (229)
T PRK06893 173 NAYQR 177 (229)
T ss_pred HHHHc
Confidence 87643
No 85
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=88.84 E-value=7.4 Score=44.51 Aligned_cols=143 Identities=8% Similarity=0.002 Sum_probs=83.0
Q ss_pred CCCccccchhhHHHHHHHHHc---CCCCceEEEEEE---------------e---------eCCceEEEEEEe----CCH
Q 007787 92 RDNMMSLQDDAMVELLDQLIE---GPLQLSVVAIID---------------S---------FILIVHAWVSFD----TDP 140 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~---~~~~~~vi~IvG---------------~---------F~~~~~~wv~v~----~~~ 140 (589)
++.+.|||++ .++|...|.. +...-.++-|+| . .. ...+|.|+ .+.
T Consensus 754 PD~LPhREeE-IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp--~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 754 PKYLPCREKE-IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLP--SFNVFEINGMNVVHP 830 (1164)
T ss_pred CCcCCChHHH-HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCC--CceEEEEeCCccCCH
Confidence 4678999999 9999988854 223345777888 1 11 23355562 357
Q ss_pred HHHHHHHHHHhCCCCccccccccCHHHHHHHHHHHcCC---ceEEEEEecCCChh--hHHHHhhhcCC-CCCCcEEEE--
Q 007787 141 GTMLDNILKYVMPQSAFREILYKDFEKRKTALHDYLKN---KRYLIVLYDVFTND--VWDYLGEALPD-HQNGSRVLV-- 212 (589)
Q Consensus 141 ~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~---kr~LlVLDDvw~~~--~w~~l~~~l~~-~~~gs~Iiv-- 212 (589)
..+...|..++..... ............+...+.. ...+||||+|..-. .=+.|...+.+ ...+++|+|
T Consensus 831 ~sIYqvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred HHHHHHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 7888899988855432 1223334455556655522 34589999996431 10112222221 124566554
Q ss_pred ecccCc--------E--------EecCCCChHHHHHhhccccCC
Q 007787 213 ILFDDE--------I--------FNLCILENEDMINLDSVPATP 240 (589)
Q Consensus 213 TTR~~~--------v--------~~l~~L~~~~~~~Lf~~~a~~ 240 (589)
+|..-. | +...+.+.++-.+++..++-.
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 232211 1 556788888888888877653
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.36 E-value=0.33 Score=28.85 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.3
Q ss_pred CCCccEEEecCCccccccccc
Q 007787 365 LLNLYTIDMPSSYVRCTPDSI 385 (589)
Q Consensus 365 L~~L~~L~L~~~~l~~lp~~~ 385 (589)
|++|++|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999998764
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.36 E-value=0.33 Score=28.85 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.3
Q ss_pred CCCccEEEecCCccccccccc
Q 007787 365 LLNLYTIDMPSSYVRCTPDSI 385 (589)
Q Consensus 365 L~~L~~L~L~~~~l~~lp~~~ 385 (589)
|++|++|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999998764
No 88
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.14 E-value=0.82 Score=39.24 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=16.6
Q ss_pred CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEe
Q 007787 464 YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLK 500 (589)
Q Consensus 464 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 500 (589)
|..+++|+.+.+.+ .+.......+..+++|+.+.+.
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred eecccccccccccc-cccccccccccccccccccccC
Confidence 55555566666644 2222333445556666666663
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.72 E-value=1.1 Score=38.41 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=24.8
Q ss_pred ccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCccccccc-cccccccCceeee
Q 007787 338 GINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNF 396 (589)
Q Consensus 338 ~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l 396 (589)
.|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+.++ +..++. .+.++++|+.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 455666777777654 4555544 3445556777766654 444433 2444445555554
No 90
>PRK13342 recombination factor protein RarA; Reviewed
Probab=86.71 E-value=5.7 Score=42.09 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=40.7
Q ss_pred CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEE--ecccCc--E----------EecCCCChHHHHHhhcccc
Q 007787 177 KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLV--ILFDDE--I----------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 177 ~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~Iiv--TTR~~~--v----------~~l~~L~~~~~~~Lf~~~a 238 (589)
.+++.+|++|+++.. ...+.+...+. .|..++| ||.+.. + +.+.+++.++.+.++.+.+
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHH
Confidence 457889999999865 45566655543 3555555 344322 1 8999999999999988743
No 91
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.33 E-value=0.048 Score=58.79 Aligned_cols=196 Identities=22% Similarity=0.151 Sum_probs=112.1
Q ss_pred CCCCccEEEecCC-cccc--ccccccccccCceeeecC-----ccc----CCcccccCCCCcccccccccC-CCCchhhh
Q 007787 364 NLLNLYTIDMPSS-YVRC--TPDSIGKMHELRHLNFRT-----ITL----PAHPGKFCTSLENLNFISVLH-PSSCTRDI 430 (589)
Q Consensus 364 ~L~~L~~L~L~~~-~l~~--lp~~~~~L~~L~~L~l~~-----~~l----p~~i~~~l~~L~~L~l~~~~~-~~~~~~~~ 430 (589)
.+++|+.|.+.++ .+.. +-.....+++|+.|+++. ... +.... .+.+|+.|++..+.. +...+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~isd~~l~~- 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS-ICRKLKSLDLSGCGLVTDIGLSA- 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh-hcCCcCccchhhhhccCchhHHH-
Confidence 4789999999988 6665 445567789999999862 111 11222 678899999887773 5555565
Q ss_pred hcCcccCCCCCCeEEEeeCC-CCCCCCceecCCCCCCCCCccEEEEEeecCCCC--CCCCcccccccceeEEecCc----
Q 007787 431 LGRLPSEFELLESLKLVNEL-KIPSQLSSIVLPEYQFPPSLIELSLANTELRDD--PMPKPKKLLHLQVLKLKKNS---- 503 (589)
Q Consensus 431 l~~L~~~l~~L~~L~l~~~~-~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~---- 503 (589)
++. .+++|+.|.+.... ..+..|..+ ...+++|++|++++|....+ ......++++|+.|.+....
T Consensus 264 l~~---~c~~L~~L~l~~c~~lt~~gl~~i----~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~ 336 (482)
T KOG1947|consen 264 LAS---RCPNLETLSLSNCSNLTDEGLVSI----AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPS 336 (482)
T ss_pred HHh---hCCCcceEccCCCCccchhHHHHH----HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCcc
Confidence 652 57899999866532 010111111 45678899999999875321 22223456777776653221
Q ss_pred ccCceeeEecCCCCCCC---ccccCcccccccceeeEeecCCCCCCc--cccccCCC--------------CCEEEEeCC
Q 007787 504 FIGRKLICRFGCFPSLK---EWIVEFEAIPKLESLIINPCAHLKRLP--EDLWRVKS--------------LTKLELWWP 564 (589)
Q Consensus 504 ~~~~~~~~~~~~f~~L~---~l~~~~~~l~~L~~L~L~~n~~l~~lp--~~l~~l~~--------------L~~L~l~~~ 564 (589)
++.... .++.... ........+++|+.+.+.+|.. .... ..+..++. |+.|+++.|
T Consensus 337 l~~~~l----~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 337 LTDLSL----SGLLTLTSDDLAELILRSCPKLTDLSLSYCGI-SDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred HHHHHH----HHhhccCchhHhHHHHhcCCCcchhhhhhhhc-cCcchHHHhcCCcccchHHHHHhccCCccceEecccC
Confidence 111100 0000000 0112345788899998888883 3221 22333333 477777777
Q ss_pred cHHHHHHHh
Q 007787 565 RFELRERLR 573 (589)
Q Consensus 565 ~~~~~~~~~ 573 (589)
.......+.
T Consensus 412 ~~~t~~~l~ 420 (482)
T KOG1947|consen 412 RLVTDKGLR 420 (482)
T ss_pred ccccccchH
Confidence 755444443
No 92
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=85.08 E-value=3.8 Score=41.81 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=63.8
Q ss_pred CCCCccccchhhHHHHHHHHHcCCC-CceEEEEEE------------eeCC--ceEEEEEE--eCCHHHHHHHHHHHhCC
Q 007787 91 QRDNMMSLQDDAMVELLDQLIEGPL-QLSVVAIID------------SFIL--IVHAWVSF--DTDPGTMLDNILKYVMP 153 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~~~~-~~~vi~IvG------------~F~~--~~~~wv~v--~~~~~~i~~~il~~l~~ 153 (589)
.++.+.+|+.+ ...+..++...+. -.+.|-|+| .|.. -..+|+++ .|..+-+...|+.+...
T Consensus 4 l~~~v~~Re~q-i~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~ 82 (438)
T KOG2543|consen 4 LEPNVPCRESQ-IRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQL 82 (438)
T ss_pred cccCccchHHH-HHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhcc
Confidence 35678899999 9999998877654 344457888 2220 14579998 99999999999999952
Q ss_pred -CCccccccc--cCHHHHHHHHHH--HcC--CceEEEEEecCCCh
Q 007787 154 -QSAFREILY--KDFEKRKTALHD--YLK--NKRYLIVLYDVFTN 191 (589)
Q Consensus 154 -~~~~~~~~~--~~~~~~~~~l~~--~L~--~kr~LlVLDDvw~~ 191 (589)
.......+. .+..+....+.+ ... ++.++||||++..-
T Consensus 83 ~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l 127 (438)
T KOG2543|consen 83 ADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL 127 (438)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh
Confidence 221000111 222233333333 222 46999999998654
No 93
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.45 E-value=0.04 Score=51.75 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=69.9
Q ss_pred ccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---CcccCCcccccCCCCcc
Q 007787 338 GINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TITLPAHPGKFCTSLEN 414 (589)
Q Consensus 338 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~lp~~i~~~l~~L~~ 414 (589)
.+......+.||++.|++..+-..+..++.|..|+++.|.+..+|.+++.+..++++++. ....|.+.+ +++.++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~-k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK-KEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc-ccCCcch
Confidence 556778889999999998888778888899999999999999999999999999998887 567888888 8888888
Q ss_pred ccccccc
Q 007787 415 LNFISVL 421 (589)
Q Consensus 415 L~l~~~~ 421 (589)
++.-.+.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 7754443
No 94
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=84.19 E-value=4.9 Score=34.38 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=55.5
Q ss_pred eEEEEEE--eCCHHHHHHHHHHHhCCCCccccccccCHHHHHHHHHHHcCCce-EEEEEecCCCh---hhHHHHhhhcCC
Q 007787 130 VHAWVSF--DTDPGTMLDNILKYVMPQSAFREILYKDFEKRKTALHDYLKNKR-YLIVLYDVFTN---DVWDYLGEALPD 203 (589)
Q Consensus 130 ~~~wv~v--~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDDvw~~---~~w~~l~~~l~~ 203 (589)
..+|+.. ..+...+...|+.++..... ...+...+.+.+.+.+...+ .+||+||+..- ..++.+.....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~- 113 (131)
T PF13401_consen 39 DVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN- 113 (131)
T ss_dssp EEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC-
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh-
Confidence 5667777 45799999999999988664 33566777788888887654 59999998543 45666655443
Q ss_pred CCCCcEEEEecc
Q 007787 204 HQNGSRVLVILF 215 (589)
Q Consensus 204 ~~~gs~IivTTR 215 (589)
..+.+||+..+
T Consensus 114 -~~~~~vvl~G~ 124 (131)
T PF13401_consen 114 -ESNIKVVLVGT 124 (131)
T ss_dssp -SCBEEEEEEES
T ss_pred -CCCCeEEEEEC
Confidence 55667776654
No 95
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.44 E-value=0.11 Score=47.98 Aligned_cols=86 Identities=15% Similarity=0.248 Sum_probs=60.1
Q ss_pred CCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCC-
Q 007787 468 PSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRL- 546 (589)
Q Consensus 468 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~l- 546 (589)
..++.++-+++.+...-...+.+++.++.|.+.++..-+.. ++ ..--+-.|+|+.|+|++|+-.++-
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~------~L------~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW------CL------ERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH------HH------HHhcccccchheeeccCCCeechhH
Confidence 34788888888887777778888899999998655432211 00 001124689999999999976542
Q ss_pred ccccccCCCCCEEEEeCCc
Q 007787 547 PEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 547 p~~l~~l~~L~~L~l~~~~ 565 (589)
-..+..+++|+.|.+++.|
T Consensus 169 L~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 169 LACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHHhhhhHHHHhcCch
Confidence 2346678999999999877
No 96
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.86 E-value=4.5 Score=45.53 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=70.7
Q ss_pred eEEEEEE---eCCHHHHHHHHHHHhCCCCcc--cc-------ccccCHHHHHHHHHHHcCC--ceEEEEEecCCCh---h
Q 007787 130 VHAWVSF---DTDPGTMLDNILKYVMPQSAF--RE-------ILYKDFEKRKTALHDYLKN--KRYLIVLYDVFTN---D 192 (589)
Q Consensus 130 ~~~wv~v---~~~~~~i~~~il~~l~~~~~~--~~-------~~~~~~~~~~~~l~~~L~~--kr~LlVLDDvw~~---~ 192 (589)
.++|.+. +-|+.+..+-++..+..-.+. .+ ....+...+...+...+.. +...+||||.--. .
T Consensus 66 ~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~ 145 (894)
T COG2909 66 AVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPA 145 (894)
T ss_pred ceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCccc
Confidence 7899999 788999999999888753220 00 2233445566666665554 6889999997533 2
Q ss_pred hHHHHhhhcCCCCCCcEEEEecccCcE----------------EecCCCChHHHHHhhcccc
Q 007787 193 VWDYLGEALPDHQNGSRVLVILFDDEI----------------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 193 ~w~~l~~~l~~~~~gs~IivTTR~~~v----------------~~l~~L~~~~~~~Lf~~~a 238 (589)
--+.+...+.....+=..|||||+.-- -..=.++.+|+-++|....
T Consensus 146 l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 146 LHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 222333334445567789999999765 2222467788888887764
No 97
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=79.39 E-value=4.7 Score=40.63 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=32.5
Q ss_pred CcEEEEecccCcE-----------EecCCCChHHHHHhhccccCCCCCC------------CCCCchhhh
Q 007787 207 GSRVLVILFDDEI-----------FNLCILENEDMINLDSVPATPLRAT------------YQERPLVCL 253 (589)
Q Consensus 207 gs~IivTTR~~~v-----------~~l~~L~~~~~~~Lf~~~a~~~~~~------------c~glPlai~ 253 (589)
.+-|.+||+...+ +++.++++++..+++.+.+...... |+|.|-.+.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~ 199 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIAN 199 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHH
Confidence 4556667765433 7899999999999998776432211 999985543
No 98
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.20 E-value=0.011 Score=63.37 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=13.1
Q ss_pred cccCCCCCCCEEEeecCCcc
Q 007787 337 AGINLLLLLKYLKLNIPYLK 356 (589)
Q Consensus 337 ~~~~~l~~Lr~L~L~~~~i~ 356 (589)
..+..+++|..|++++|.+.
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHhcccccHhHhhcccCCCc
Confidence 34556667777777777665
No 99
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=77.50 E-value=7.8 Score=35.39 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=17.7
Q ss_pred CccccchhhHHHHHHHHH-cCCCCceEEEEEE
Q 007787 94 NMMSLQDDAMVELLDQLI-EGPLQLSVVAIID 124 (589)
Q Consensus 94 ~~vGr~~~~~~~i~~~L~-~~~~~~~vi~IvG 124 (589)
.+|||+++ .+++...|. ......+++-|+|
T Consensus 1 ~fvgR~~e-~~~l~~~l~~~~~~~~~~~ll~G 31 (185)
T PF13191_consen 1 QFVGREEE-IERLRDLLDAAQSGSPRNLLLTG 31 (185)
T ss_dssp --TT-HHH-HHHHHHTTGGTSS-----EEE-B
T ss_pred CCCCHHHH-HHHHHHHHHHHHcCCCcEEEEEC
Confidence 36899999 999999994 2334568999999
No 100
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=77.23 E-value=0.014 Score=62.53 Aligned_cols=74 Identities=26% Similarity=0.170 Sum_probs=49.8
Q ss_pred hhHHHHHHhhCCCc--------------cCcccEEEEcCCCCc-----cCCcccCCC-CCCCEEEeecCCcc-----ccc
Q 007787 305 RQLNQLWIAEGFIP--------------ETARKLLNLGTIVLE-----EYPAGINLL-LLLKYLKLNIPYLK-----HLP 359 (589)
Q Consensus 305 ~~L~~l~~~~~~i~--------------~~ler~L~L~~n~l~-----~~p~~~~~l-~~Lr~L~L~~~~i~-----~lp 359 (589)
..+..+|++.+.+. .++ .-|++++|.+. .+-..+... ..|++|++..|.++ .+.
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L-~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTL-GQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccH-hHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence 34888888888776 112 23899999986 111222232 56777888887766 455
Q ss_pred hhhcCCCCccEEEecCCccc
Q 007787 360 ASLCNLLNLYTIDMPSSYVR 379 (589)
Q Consensus 360 ~~i~~L~~L~~L~L~~~~l~ 379 (589)
..+.....|+.++++.|.+.
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHhcccchhHHHHHhcccc
Confidence 66667888999999998553
No 101
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=76.29 E-value=4.2 Score=45.35 Aligned_cols=72 Identities=19% Similarity=0.105 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEE--ecccCcE-----------EecCCCChHHHH
Q 007787 167 KRKTALHDYLKNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLV--ILFDDEI-----------FNLCILENEDMI 231 (589)
Q Consensus 167 ~~~~~l~~~L~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~Iiv--TTR~~~v-----------~~l~~L~~~~~~ 231 (589)
..+..+.+.+++++++++-|+.|.. ..|+.++..+..+.+...|++ ||++... +.+.+++.+|.+
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 4688999999999999998888765 469999887777766666666 6665432 788899999999
Q ss_pred Hhhcccc
Q 007787 232 NLDSVPA 238 (589)
Q Consensus 232 ~Lf~~~a 238 (589)
.++.+.+
T Consensus 360 ~Il~~~a 366 (615)
T TIGR02903 360 LIVLNAA 366 (615)
T ss_pred HHHHHHH
Confidence 9988864
No 102
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=76.06 E-value=5.8 Score=41.72 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=59.3
Q ss_pred ceEEEEEecCCChhhHHHHhhhcCCCCCCcEEEEecccCcE---------------EecCCCChHHHHHhhccccCCC--
Q 007787 179 KRYLIVLYDVFTNDVWDYLGEALPDHQNGSRVLVILFDDEI---------------FNLCILENEDMINLDSVPATPL-- 241 (589)
Q Consensus 179 kr~LlVLDDvw~~~~w~~l~~~l~~~~~gs~IivTTR~~~v---------------~~l~~L~~~~~~~Lf~~~a~~~-- 241 (589)
++.+|+||.|-....|+.....+.+.++. +|++|+.+..+ +.+-||+-.|...+-...+...
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~~~~ 172 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEPSKL 172 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccchhHH
Confidence 77899999999999999999988887766 99999888776 9999999999876533111111
Q ss_pred ------CCCCCCCchhhhcccc
Q 007787 242 ------RATYQERPLVCLYYGS 257 (589)
Q Consensus 242 ------~~~c~glPlai~~~g~ 257 (589)
--..||.|-++..-..
T Consensus 173 ~~~f~~Yl~~GGfP~~v~~~~~ 194 (398)
T COG1373 173 ELLFEKYLETGGFPESVKADLS 194 (398)
T ss_pred HHHHHHHHHhCCCcHHHhCcch
Confidence 0018899988776553
No 103
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=75.76 E-value=30 Score=29.51 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=26.3
Q ss_pred cCCceEEEEEecCCCh-----hhHHHHhhhcCCC---CCCcEEEEecccCc
Q 007787 176 LKNKRYLIVLYDVFTN-----DVWDYLGEALPDH---QNGSRVLVILFDDE 218 (589)
Q Consensus 176 L~~kr~LlVLDDvw~~-----~~w~~l~~~l~~~---~~gs~IivTTR~~~ 218 (589)
...+..++|+||++.. ..+..+....... ..+..||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3457789999999964 2233333333221 35788888887643
No 104
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.83 E-value=16 Score=38.52 Aligned_cols=144 Identities=10% Similarity=0.036 Sum_probs=81.3
Q ss_pred CCCCccccchhhHHHHHHHHHcC-----CCCceEEEEEE------------eeCCceEEEEEE--e----CCHHHHHHHH
Q 007787 91 QRDNMMSLQDDAMVELLDQLIEG-----PLQLSVVAIID------------SFILIVHAWVSF--D----TDPGTMLDNI 147 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~~-----~~~~~vi~IvG------------~F~~~~~~wv~v--~----~~~~~i~~~i 147 (589)
.+..++||+.+ ++.+.+|+... ...+.|-|=-| +|..+....++| + -....+.+.|
T Consensus 148 ~p~~l~gRe~e-~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELE-MDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHH-HHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 46789999999 99999998642 22344444444 333223333334 2 3466788888
Q ss_pred HHHhCCCCccccccccCHHHHHHHHHHHcCCc--eEEEEEecCCChh--hHHHHhhhcCCC-CCCcEEEEecccCcE---
Q 007787 148 LKYVMPQSAFREILYKDFEKRKTALHDYLKNK--RYLIVLYDVFTND--VWDYLGEALPDH-QNGSRVLVILFDDEI--- 219 (589)
Q Consensus 148 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDDvw~~~--~w~~l~~~l~~~-~~gs~IivTTR~~~v--- 219 (589)
...+..... ......+.++.+.+..++. -+++|||.+..-. .=+.+...|.|- -++||+|+.---..+
T Consensus 227 ~~~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 227 FSSLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 877732211 1122255667777777664 5899999885431 111122222222 245665543221111
Q ss_pred -----------------EecCCCChHHHHHhhccccC
Q 007787 220 -----------------FNLCILENEDMINLDSVPAT 239 (589)
Q Consensus 220 -----------------~~l~~L~~~~~~~Lf~~~a~ 239 (589)
....+-+.++..+++..+.-
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 66677788888888887753
No 105
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=74.16 E-value=14 Score=37.74 Aligned_cols=47 Identities=11% Similarity=-0.013 Sum_probs=32.8
Q ss_pred CcEEEEecccCcE-----------EecCCCChHHHHHhhccccCCCCCC------------CCCCchhhh
Q 007787 207 GSRVLVILFDDEI-----------FNLCILENEDMINLDSVPATPLRAT------------YQERPLVCL 253 (589)
Q Consensus 207 gs~IivTTR~~~v-----------~~l~~L~~~~~~~Lf~~~a~~~~~~------------c~glPlai~ 253 (589)
.+-|..|||...+ +++.++++++..+++.+.+...... |+|.|-.+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~ 220 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIAN 220 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHH
Confidence 3456667775444 7899999999999998775433221 999995443
No 106
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=73.96 E-value=5.3 Score=38.97 Aligned_cols=62 Identities=11% Similarity=-0.059 Sum_probs=36.4
Q ss_pred eeCCceEEEEEE----eCCHHHHHHHH-----HHHhCCCCccccccccCHHHHHHHHHHH-cCCceEEEEEecCCCh
Q 007787 125 SFILIVHAWVSF----DTDPGTMLDNI-----LKYVMPQSAFREILYKDFEKRKTALHDY-LKNKRYLIVLYDVFTN 191 (589)
Q Consensus 125 ~F~~~~~~wv~v----~~~~~~i~~~i-----l~~l~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDDvw~~ 191 (589)
+|+ .++||++ .+++.+++++| +.++..... ....-..........+ -+++++++++|++-.-
T Consensus 44 ~fd--v~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~---~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 44 HPE--VYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE---RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred cCC--eEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH---HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 689 9999997 38999999999 333332110 0000111122222222 3479999999999543
No 107
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=73.30 E-value=55 Score=33.97 Aligned_cols=160 Identities=13% Similarity=0.066 Sum_probs=92.9
Q ss_pred CCccccchhhHHHHHHHHHcC--CCCceEEEEEE-------------------eeCCceEEEEEE--eCCHHHHHHHHHH
Q 007787 93 DNMMSLQDDAMVELLDQLIEG--PLQLSVVAIID-------------------SFILIVHAWVSF--DTDPGTMLDNILK 149 (589)
Q Consensus 93 ~~~vGr~~~~~~~i~~~L~~~--~~~~~vi~IvG-------------------~F~~~~~~wv~v--~~~~~~i~~~il~ 149 (589)
..+.+|+++ .+++...|..- +....-+-|+| ...+...+.|.- ......+..+|+.
T Consensus 17 ~~l~~Re~e-i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEE-INQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHH-HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 348999999 99999888531 11222277888 112001333333 6678899999999
Q ss_pred HhCCCCccccccccCHHHHHHHHHHHcCC--ceEEEEEecCCChhhH--HHHhhhcCCCCC-CcEEEEecccCcE-----
Q 007787 150 YVMPQSAFREILYKDFEKRKTALHDYLKN--KRYLIVLYDVFTNDVW--DYLGEALPDHQN-GSRVLVILFDDEI----- 219 (589)
Q Consensus 150 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDDvw~~~~w--~~l~~~l~~~~~-gs~IivTTR~~~v----- 219 (589)
++..... ......+....+.+.+.. +.++||||++.....= +.+...+..... .++|++-.-....
T Consensus 96 ~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 96 KLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9974322 345556667777777754 8999999999765211 333333333222 4655444333322
Q ss_pred -------------EecCCCChHHHHHhhccccCCC---CCC-CCCCchhhhcccc
Q 007787 220 -------------FNLCILENEDMINLDSVPATPL---RAT-YQERPLVCLYYGS 257 (589)
Q Consensus 220 -------------~~l~~L~~~~~~~Lf~~~a~~~---~~~-c~glPlai~~~g~ 257 (589)
+...+-+.++-.+....++-.. ... =+.+|+++...|.
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~ 226 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAA 226 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Confidence 5566667777777766665322 111 3345555544444
No 108
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.67 E-value=2.3 Score=25.39 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=8.8
Q ss_pred CCCEEEeecCCccccch
Q 007787 344 LLKYLKLNIPYLKHLPA 360 (589)
Q Consensus 344 ~Lr~L~L~~~~i~~lp~ 360 (589)
+|++|+.++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 35555555555555553
No 109
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.26 E-value=1.1 Score=41.55 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=48.4
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCC-cc--ccchhhc-CCCCccEEEecCC-ccccc-cccccccccCceee
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPY-LK--HLPASLC-NLLNLYTIDMPSS-YVRCT-PDSIGKMHELRHLN 395 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~-i~--~lp~~i~-~L~~L~~L~L~~~-~l~~l-p~~~~~L~~L~~L~ 395 (589)
..+|-+++.|. .=-+.+..++.++.|.+.++. +. .| +.++ -.++|+.|++++| .|++- -..+.++++|+.|.
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45777777766 333456778888888887764 22 11 1232 3689999999999 77643 23466777777777
Q ss_pred ec
Q 007787 396 FR 397 (589)
Q Consensus 396 l~ 397 (589)
++
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 65
No 110
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.25 E-value=4.1 Score=24.33 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=7.0
Q ss_pred CCCCEEEeecCCcc
Q 007787 343 LLLKYLKLNIPYLK 356 (589)
Q Consensus 343 ~~Lr~L~L~~~~i~ 356 (589)
.+|+.|+|++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 111
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=66.72 E-value=25 Score=39.86 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=43.4
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccC-cE----------EecCCCChHHHHHhhcccc
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDD-EI----------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~-~v----------~~l~~L~~~~~~~Lf~~~a 238 (589)
++.-++|||++... ..|+.+...+-.-....++|+||.+. .+ ++++.++.++..+.+.+.+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHH
Confidence 34457889999765 46888877765544566766665553 33 9999999999887776643
No 112
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.26 E-value=1.8 Score=25.07 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=5.4
Q ss_pred CCCCEEEeecCCcc
Q 007787 343 LLLKYLKLNIPYLK 356 (589)
Q Consensus 343 ~~Lr~L~L~~~~i~ 356 (589)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444443
No 113
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.18 E-value=7.7 Score=42.11 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=43.7
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEE-ecccCcE----------EecCCCChHHHHHhhcccc
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLV-ILFDDEI----------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~Iiv-TTR~~~v----------~~l~~L~~~~~~~Lf~~~a 238 (589)
+++-++|+|+++.. ..++.+...+........+|+ |+..+.+ +++.++++++..+.+.+.+
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHH
Confidence 46668999999765 568888777765444555444 4444444 9999999999998887754
No 114
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=64.83 E-value=20 Score=37.25 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=52.9
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccCc-E----------EecCCCChHHHHHhhccccCCCCC-
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDDE-I----------FNLCILENEDMINLDSVPATPLRA- 243 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~~-v----------~~l~~L~~~~~~~Lf~~~a~~~~~- 243 (589)
+.+-++|+||+... .....+...+..-..++.+|++|.... + +.+.+++.++..+++.........
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~~ 219 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDD 219 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCHH
Confidence 45668999998654 567777776655445666666665543 3 999999999999998876433222
Q ss_pred ---C----CCCCchhhhcc
Q 007787 244 ---T----YQERPLVCLYY 255 (589)
Q Consensus 244 ---~----c~glPlai~~~ 255 (589)
. ++|.|..+..+
T Consensus 220 ~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 220 PRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 1 88888655443
No 115
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=64.16 E-value=1e+02 Score=30.86 Aligned_cols=134 Identities=12% Similarity=0.082 Sum_probs=72.8
Q ss_pred CCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCcc---ccc---cccCH
Q 007787 92 RDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSAF---REI---LYKDF 165 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~~---~~~---~~~~~ 165 (589)
-.+++|+++. ++.+.+++.... ...+-++|.= ......+.+.+..++...... -.. +....
T Consensus 16 ~~~~~g~~~~-~~~l~~~i~~~~--~~~~ll~G~~----------G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 82 (319)
T PRK00440 16 LDEIVGQEEI-VERLKSYVKEKN--MPHLLFAGPP----------GTGKTTAALALARELYGEDWRENFLELNASDERGI 82 (319)
T ss_pred HHHhcCcHHH-HHHHHHHHhCCC--CCeEEEECCC----------CCCHHHHHHHHHHHHcCCccccceEEeccccccch
Confidence 3468899998 999999987543 3345777711 122444555555554332110 000 11111
Q ss_pred HHHHHHHHHHc-----C-CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEeccc-CcE----------EecCCCC
Q 007787 166 EKRKTALHDYL-----K-NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFD-DEI----------FNLCILE 226 (589)
Q Consensus 166 ~~~~~~l~~~L-----~-~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~-~~v----------~~l~~L~ 226 (589)
......+.+.. . ..+-+|++|++... ...+.+...+......+++|+++.. ..+ +++.+++
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~ 162 (319)
T PRK00440 83 DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLK 162 (319)
T ss_pred HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCC
Confidence 11122222221 1 23558889998543 4556666665544455677766633 222 8888899
Q ss_pred hHHHHHhhcccc
Q 007787 227 NEDMINLDSVPA 238 (589)
Q Consensus 227 ~~~~~~Lf~~~a 238 (589)
+++......+.+
T Consensus 163 ~~ei~~~l~~~~ 174 (319)
T PRK00440 163 KEAVAERLRYIA 174 (319)
T ss_pred HHHHHHHHHHHH
Confidence 888777666544
No 116
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=62.91 E-value=20 Score=37.49 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=37.2
Q ss_pred eeCCceEEEEEE----eCCHHHHHHHHHHHhCCCCcc-ccccccCH-HHHHHHHHHH-cCCceEEEEEecCCCh
Q 007787 125 SFILIVHAWVSF----DTDPGTMLDNILKYVMPQSAF-REILYKDF-EKRKTALHDY-LKNKRYLIVLYDVFTN 191 (589)
Q Consensus 125 ~F~~~~~~wv~v----~~~~~~i~~~il~~l~~~~~~-~~~~~~~~-~~~~~~l~~~-L~~kr~LlVLDDvw~~ 191 (589)
||+ ..+||.+ ..++.++++.|+..+-..... +....... ....+..... -++++++|++|++-.-
T Consensus 196 hfd--v~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 196 HPE--VELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred CCc--eEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHH
Confidence 599 9999999 479999999995443322110 00000000 1111122222 3589999999999544
No 117
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=57.61 E-value=1.2e+02 Score=30.43 Aligned_cols=133 Identities=11% Similarity=0.054 Sum_probs=70.1
Q ss_pred CCCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCccccccccCHHHHHH
Q 007787 91 QRDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSAFREILYKDFEKRKT 170 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~ 170 (589)
.-++++|.++. ++++..++..+. -..++-++|.= ......+.+.+..++......-.......+.+..
T Consensus 19 ~~~~~~~~~~~-~~~l~~~~~~~~-~~~~lll~G~~----------G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~ 86 (316)
T PHA02544 19 TIDECILPAAD-KETFKSIVKKGR-IPNMLLHSPSP----------GTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRN 86 (316)
T ss_pred cHHHhcCcHHH-HHHHHHHHhcCC-CCeEEEeeCcC----------CCCHHHHHHHHHHHhCccceEeccCcccHHHHHH
Confidence 34688999999 999999987543 33455556611 1224445555555553321000000011222222
Q ss_pred HHHHHc-----CCceEEEEEecCCCh---hhHHHHhhhcCCCCCCcEEEEecccCcE-----------EecCCCChHHHH
Q 007787 171 ALHDYL-----KNKRYLIVLYDVFTN---DVWDYLGEALPDHQNGSRVLVILFDDEI-----------FNLCILENEDMI 231 (589)
Q Consensus 171 ~l~~~L-----~~kr~LlVLDDvw~~---~~w~~l~~~l~~~~~gs~IivTTR~~~v-----------~~l~~L~~~~~~ 231 (589)
.+.+.. .+.+-++|+||+... +..+.+...+.....++++|+||....- +.+...+.++..
T Consensus 87 ~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~ 166 (316)
T PHA02544 87 RLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQI 166 (316)
T ss_pred HHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHH
Confidence 232221 234557889999654 2333444434444567788888865332 666666777665
Q ss_pred Hhhc
Q 007787 232 NLDS 235 (589)
Q Consensus 232 ~Lf~ 235 (589)
+++.
T Consensus 167 ~il~ 170 (316)
T PHA02544 167 EMMK 170 (316)
T ss_pred HHHH
Confidence 5543
No 118
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=56.88 E-value=86 Score=35.83 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=39.7
Q ss_pred CceEEEEEecCCC--hhhHHHHhhhcCCCCCCcEEEEe--cccCc------------EEecCCCChHHHHHhhcccc
Q 007787 178 NKRYLIVLYDVFT--NDVWDYLGEALPDHQNGSRVLVI--LFDDE------------IFNLCILENEDMINLDSVPA 238 (589)
Q Consensus 178 ~kr~LlVLDDvw~--~~~w~~l~~~l~~~~~gs~IivT--TR~~~------------v~~l~~L~~~~~~~Lf~~~a 238 (589)
+++.+++|||++. ...++.+...+ ..|+.++|+ |.+.. ++.+++++.++...++.+.+
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHH
Confidence 4677999999964 45666666544 346666664 33321 29999999999999887654
No 119
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=54.30 E-value=23 Score=31.86 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=34.7
Q ss_pred HHHHHHHcCCceE-EEEEecCCCh-----hhHHHHhhhcCCCCCCcEEEEecccCc
Q 007787 169 KTALHDYLKNKRY-LIVLYDVFTN-----DVWDYLGEALPDHQNGSRVLVILFDDE 218 (589)
Q Consensus 169 ~~~l~~~L~~kr~-LlVLDDvw~~-----~~w~~l~~~l~~~~~gs~IivTTR~~~ 218 (589)
-+..++.+....| |+|||++-.. -..+++...+.....+.-||+|.|...
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3445555555444 9999999544 356777777766666788999999844
No 120
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=53.51 E-value=17 Score=37.82 Aligned_cols=63 Identities=16% Similarity=0.056 Sum_probs=35.4
Q ss_pred eeCCceEEEEEE--eC--CHHHHHHHHHHHhCCCCcc--cccc---ccCHHHHHHHHHHHcCCceEEEEEecCCCh
Q 007787 125 SFILIVHAWVSF--DT--DPGTMLDNILKYVMPQSAF--REIL---YKDFEKRKTALHDYLKNKRYLIVLYDVFTN 191 (589)
Q Consensus 125 ~F~~~~~~wv~v--~~--~~~~i~~~il~~l~~~~~~--~~~~---~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~ 191 (589)
||+ +++||++ .+ ++.+++++|...+-..... +... ....-+.++.++ -.+++++|++|++-.-
T Consensus 197 hFD--v~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~--e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 197 HPE--VHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLV--EHGKDVVILLDSITRL 268 (416)
T ss_pred cCC--eEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHH--HcCCCEEEEEEChHHH
Confidence 799 9999999 55 7888888886322111100 0000 000111222222 3679999999999543
No 121
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=52.37 E-value=85 Score=31.84 Aligned_cols=60 Identities=8% Similarity=0.097 Sum_probs=37.4
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccC-cE----------EecCCCChHHHHHhhccc
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDD-EI----------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~-~v----------~~l~~L~~~~~~~Lf~~~ 237 (589)
+.+-+||+||+-.. ...+.+...+......+++|+||... .+ +.+.+++.++....+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~ 196 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESI 196 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHH
Confidence 34458999998544 34555555554444456777776432 22 777888888777666654
No 122
>PRK09087 hypothetical protein; Validated
Probab=49.93 E-value=25 Score=33.75 Aligned_cols=56 Identities=9% Similarity=-0.039 Sum_probs=37.7
Q ss_pred EEEEecCCC----hhhHHHHhhhcCCCCCCcEEEEecccCc---------E---------EecCCCChHHHHHhhccccC
Q 007787 182 LIVLYDVFT----NDVWDYLGEALPDHQNGSRVLVILFDDE---------I---------FNLCILENEDMINLDSVPAT 239 (589)
Q Consensus 182 LlVLDDvw~----~~~w~~l~~~l~~~~~gs~IivTTR~~~---------v---------~~l~~L~~~~~~~Lf~~~a~ 239 (589)
+|++||+-. .+.+-.+...+. ..|..||+|++... . +++++++.++-.+++++++-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 788899943 333333333332 33677888887422 1 99999999999999887763
No 123
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.90 E-value=12 Score=22.68 Aligned_cols=14 Identities=29% Similarity=0.147 Sum_probs=8.4
Q ss_pred CCCCEEEeecCCcc
Q 007787 343 LLLKYLKLNIPYLK 356 (589)
Q Consensus 343 ~~Lr~L~L~~~~i~ 356 (589)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 124
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=49.67 E-value=40 Score=31.03 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=42.4
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccC-cE----------EecCCCChHHHHHhhccc
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDD-EI----------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~-~v----------~~l~~L~~~~~~~Lf~~~ 237 (589)
+.+-++|+|++... +.++.+...+......+.+|++|+.. .+ +++.+++.++..+.+.++
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 45667889998554 56777777776555556666666543 33 999999999988877776
No 125
>COG3899 Predicted ATPase [General function prediction only]
Probab=49.09 E-value=93 Score=36.35 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=22.8
Q ss_pred CccccchhhHHHHHHHHHcC-CCCceEEEEEE
Q 007787 94 NMMSLQDDAMVELLDQLIEG-PLQLSVVAIID 124 (589)
Q Consensus 94 ~~vGr~~~~~~~i~~~L~~~-~~~~~vi~IvG 124 (589)
.++||+.+ .+.+...+..- ...-.|+.+.|
T Consensus 1 ~l~GRe~e-v~~Ll~~f~~v~~g~~~~~lv~G 31 (849)
T COG3899 1 PLYGRETE-LAQLLAAFDRVSKGRGEVVLVAG 31 (849)
T ss_pred CCCchHhH-HHHHHHHHHHHhCCCeEEEEEee
Confidence 47899999 99998888642 23455888888
No 126
>PLN03025 replication factor C subunit; Provisional
Probab=47.74 E-value=2.2e+02 Score=28.79 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=70.4
Q ss_pred CCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCC---ccccc---cccCHH
Q 007787 93 DNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQS---AFREI---LYKDFE 166 (589)
Q Consensus 93 ~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~---~~~~~---~~~~~~ 166 (589)
.+++|-++. .+.+.+++..+. ..-+-++|.-+ .....+...+.+.+.... ..-+. +....+
T Consensus 13 ~~~~g~~~~-~~~L~~~~~~~~--~~~lll~Gp~G----------~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~ 79 (319)
T PLN03025 13 DDIVGNEDA-VSRLQVIARDGN--MPNLILSGPPG----------TGKTTSILALAHELLGPNYKEAVLELNASDDRGID 79 (319)
T ss_pred HHhcCcHHH-HHHHHHHHhcCC--CceEEEECCCC----------CCHHHHHHHHHHHHhcccCccceeeecccccccHH
Confidence 468888877 888877766543 23344667111 223445555555553211 00000 111222
Q ss_pred HHHHHHHHHc-------CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccC-cE----------EecCCCC
Q 007787 167 KRKTALHDYL-------KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDD-EI----------FNLCILE 226 (589)
Q Consensus 167 ~~~~~l~~~L-------~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~-~v----------~~l~~L~ 226 (589)
.+...++... .++.-++++|++... ..-+.+...+..-...++++++|... .+ +++.+++
T Consensus 80 ~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~ 159 (319)
T PLN03025 80 VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS 159 (319)
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCC
Confidence 2333333221 134668999999655 34444544443334456766665432 22 8899999
Q ss_pred hHHHHHhhcccc
Q 007787 227 NEDMINLDSVPA 238 (589)
Q Consensus 227 ~~~~~~Lf~~~a 238 (589)
+++....+...+
T Consensus 160 ~~~l~~~L~~i~ 171 (319)
T PLN03025 160 DQEILGRLMKVV 171 (319)
T ss_pred HHHHHHHHHHHH
Confidence 988877766544
No 127
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.67 E-value=9.8 Score=22.42 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=7.7
Q ss_pred cccceeeEeecCCC
Q 007787 530 PKLESLIINPCAHL 543 (589)
Q Consensus 530 ~~L~~L~L~~n~~l 543 (589)
|+|++|+|++|+..
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45556666665543
No 128
>PRK05642 DNA replication initiation factor; Validated
Probab=44.37 E-value=22 Score=34.29 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=39.2
Q ss_pred EEEEecCCCh---hhHHH-HhhhcCC-CCCCcEEEEecccCcE------------------EecCCCChHHHHHhhcccc
Q 007787 182 LIVLYDVFTN---DVWDY-LGEALPD-HQNGSRVLVILFDDEI------------------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 182 LlVLDDvw~~---~~w~~-l~~~l~~-~~~gs~IivTTR~~~v------------------~~l~~L~~~~~~~Lf~~~a 238 (589)
++|+||+-.. ..|++ +...+.. ...|..||+|++...- +++++++.++-..+.++++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6788999633 35654 4444432 2346788998876432 8889999999888888655
Q ss_pred C
Q 007787 239 T 239 (589)
Q Consensus 239 ~ 239 (589)
.
T Consensus 180 ~ 180 (234)
T PRK05642 180 S 180 (234)
T ss_pred H
Confidence 3
No 129
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=44.02 E-value=1e+02 Score=34.75 Aligned_cols=60 Identities=8% Similarity=0.138 Sum_probs=38.9
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecc-cCcE----------EecCCCChHHHHHhhccc
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILF-DDEI----------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR-~~~v----------~~l~~L~~~~~~~Lf~~~ 237 (589)
+++-++|+|++-.. ...+.+...+-.-....++|++|. ...+ +++..++.++....+.+.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~I 190 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHV 190 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHH
Confidence 56668889998654 346666666544333455555554 4444 888899999877766654
No 130
>PTZ00202 tuzin; Provisional
Probab=43.18 E-value=3.7e+02 Score=28.93 Aligned_cols=146 Identities=9% Similarity=-0.065 Sum_probs=87.2
Q ss_pred ccCCCCCCccccchhhHHHHHHHHHcCC-CCceEEEEEE--------------eeCCceEEEEEEeCCHHHHHHHHHHHh
Q 007787 87 LLHLQRDNMMSLQDDAMVELLDQLIEGP-LQLSVVAIID--------------SFILIVHAWVSFDTDPGTMLDNILKYV 151 (589)
Q Consensus 87 ~~~~~~~~~vGr~~~~~~~i~~~L~~~~-~~~~vi~IvG--------------~F~~~~~~wv~v~~~~~~i~~~il~~l 151 (589)
..+.+...++||+.+ ...+...|...+ ...+++.|.| ...+ ..+++.-..+..++++.|+.++
T Consensus 256 ~lPa~~~~FVGReaE-la~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-~~qL~vNprg~eElLr~LL~AL 333 (550)
T PTZ00202 256 SAPAVIRQFVSREAE-ESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-MPAVFVDVRGTEDTLRSVVKAL 333 (550)
T ss_pred CCCCCccCCCCcHHH-HHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-ceEEEECCCCHHHHHHHHHHHc
Confidence 334566789999999 999999886533 3456888998 2220 2222222337899999999999
Q ss_pred CCCCccccccccCHHHHHHHHHHHc-C-CceEEEEEecCCChhhHHHHh---hhcCCCCCCcEEEEecccCcE-------
Q 007787 152 MPQSAFREILYKDFEKRKTALHDYL-K-NKRYLIVLYDVFTNDVWDYLG---EALPDHQNGSRVLVILFDDEI------- 219 (589)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~L-~-~kr~LlVLDDvw~~~~w~~l~---~~l~~~~~gs~IivTTR~~~v------- 219 (589)
+..... ....-...+++.+.+.- . +++.+||+- +.+.+.+..+. ..+.....-|.|++---.+.+
T Consensus 334 GV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~l 410 (550)
T PTZ00202 334 GVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLL 410 (550)
T ss_pred CCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccC
Confidence 973320 00111233333333322 3 677777763 33333333332 234445556778776655555
Q ss_pred -----EecCCCChHHHHHhhccc
Q 007787 220 -----FNLCILENEDMINLDSVP 237 (589)
Q Consensus 220 -----~~l~~L~~~~~~~Lf~~~ 237 (589)
|.+..++-++|...-.+.
T Consensus 411 prldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 411 PRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ccceeEecCCCCHHHHHHHHhhc
Confidence 888999999888765544
No 131
>PF14516 AAA_35: AAA-like domain
Probab=42.72 E-value=3.8e+02 Score=27.27 Aligned_cols=163 Identities=12% Similarity=0.080 Sum_probs=88.1
Q ss_pred CCCCccccchhhHHHHHHHHHcCCCCceEEEEEE-----------------eeCCceEEEEEE-e------CCHHHHHHH
Q 007787 91 QRDNMMSLQDDAMVELLDQLIEGPLQLSVVAIID-----------------SFILIVHAWVSF-D------TDPGTMLDN 146 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG-----------------~F~~~~~~wv~v-~------~~~~~i~~~ 146 (589)
+.+-.|.|... .+++.+.|.... ..+.|.| .-++|..+++.. . .+..+.++.
T Consensus 9 ~~~~Yi~R~~~-e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 9 DSPFYIERPPA-EQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCcccCchHH-HHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHH
Confidence 33455677755 566776666532 2666777 224567777777 2 244544444
Q ss_pred H----HHHhCCCCcccc-c--cccCHHHHHHHHHHHc-C--CceEEEEEecCCCh--------hhHHHHhhhcCCCC---
Q 007787 147 I----LKYVMPQSAFRE-I--LYKDFEKRKTALHDYL-K--NKRYLIVLYDVFTN--------DVWDYLGEALPDHQ--- 205 (589)
Q Consensus 147 i----l~~l~~~~~~~~-~--~~~~~~~~~~~l~~~L-~--~kr~LlVLDDvw~~--------~~w~~l~~~l~~~~--- 205 (589)
+ .+++.......+ + ...........+.+++ + +++.+|++|+|... +.|..++.-.....
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 4 444443321111 1 1123334455565543 2 58999999999643 12333332221111
Q ss_pred -CCc--EEEEecccCcE--------------EecCCCChHHHHHhhccccCCCCCC--------CCCCchhhhcccc
Q 007787 206 -NGS--RVLVILFDDEI--------------FNLCILENEDMINLDSVPATPLRAT--------YQERPLVCLYYGS 257 (589)
Q Consensus 206 -~gs--~IivTTR~~~v--------------~~l~~L~~~~~~~Lf~~~a~~~~~~--------c~glPlai~~~g~ 257 (589)
-.+ =|++.+....+ ++|.+++.+|...|..++-...... ++|.|--+..++.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHHHHHHH
Confidence 011 12222211111 9999999999999988875443332 9999977766665
No 132
>PRK06620 hypothetical protein; Validated
Probab=40.11 E-value=50 Score=31.34 Aligned_cols=57 Identities=11% Similarity=-0.044 Sum_probs=35.7
Q ss_pred eEEEEEecCC--ChhhHHHHhhhcCCCCCCcEEEEecccCcE----------------EecCCCChHHHHHhhcccc
Q 007787 180 RYLIVLYDVF--TNDVWDYLGEALPDHQNGSRVLVILFDDEI----------------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 180 r~LlVLDDvw--~~~~w~~l~~~l~~~~~gs~IivTTR~~~v----------------~~l~~L~~~~~~~Lf~~~a 238 (589)
.-++++||+. .....-.+...+. ..|..||+|++.... +++++++.++-..+.++.+
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 3478889994 2222222222222 356789999876543 8888888888777766654
No 133
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=39.98 E-value=66 Score=32.85 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=49.8
Q ss_pred ceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccCc-E----------EecCCCChHHHHHhhccccCCCCCC-
Q 007787 179 KRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDDE-I----------FNLCILENEDMINLDSVPATPLRAT- 244 (589)
Q Consensus 179 kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~~-v----------~~l~~L~~~~~~~Lf~~~a~~~~~~- 244 (589)
.|+ +|+|++... +..+.+...+-.-..++.+|+||.+.. + +.+.+++.+++.+.+.....+....
T Consensus 107 ~kv-~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 185 (328)
T PRK05707 107 RKV-VLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESDERE 185 (328)
T ss_pred CeE-EEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCChHH
Confidence 444 467999765 567777766654445666666666643 3 9999999999988887653122221
Q ss_pred -------CCCCchhhhcc
Q 007787 245 -------YQERPLVCLYY 255 (589)
Q Consensus 245 -------c~glPlai~~~ 255 (589)
++|.|..+..+
T Consensus 186 ~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 186 RIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 88888755444
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=39.29 E-value=18 Score=34.58 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=38.6
Q ss_pred HHHHHcCCceEEEEEecCCCh---hhHHHH-hhhcCC-CCCCcEEEEecccCcE------------------EecCCCCh
Q 007787 171 ALHDYLKNKRYLIVLYDVFTN---DVWDYL-GEALPD-HQNGSRVLVILFDDEI------------------FNLCILEN 227 (589)
Q Consensus 171 ~l~~~L~~kr~LlVLDDvw~~---~~w~~l-~~~l~~-~~~gs~IivTTR~~~v------------------~~l~~L~~ 227 (589)
.+++.+++-. ++++|||... ..|.+. ...+.. ...|-+||+|++..-- +++++++.
T Consensus 90 ~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~ 168 (219)
T PF00308_consen 90 EFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD 168 (219)
T ss_dssp HHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H
T ss_pred hhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH
Confidence 3445555433 6778999764 234332 222221 1357789999865432 88888888
Q ss_pred HHHHHhhccccC
Q 007787 228 EDMINLDSVPAT 239 (589)
Q Consensus 228 ~~~~~Lf~~~a~ 239 (589)
++-..++.++|-
T Consensus 169 ~~r~~il~~~a~ 180 (219)
T PF00308_consen 169 EDRRRILQKKAK 180 (219)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 135
>PRK04195 replication factor C large subunit; Provisional
Probab=38.34 E-value=1.7e+02 Score=31.68 Aligned_cols=134 Identities=7% Similarity=-0.056 Sum_probs=68.0
Q ss_pred CCCccccchhhHHHHHHHHHcC--CCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCcccc-ccccCHHHH
Q 007787 92 RDNMMSLQDDAMVELLDQLIEG--PLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSAFRE-ILYKDFEKR 168 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~--~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~~~~-~~~~~~~~~ 168 (589)
-.+++|.+.. ++++.+|+..- ....+.+-|+|.=+ ..-..+.+.++.+++...-... .+..+.+.+
T Consensus 13 l~dlvg~~~~-~~~l~~~l~~~~~g~~~~~lLL~GppG----------~GKTtla~ala~el~~~~ielnasd~r~~~~i 81 (482)
T PRK04195 13 LSDVVGNEKA-KEQLREWIESWLKGKPKKALLLYGPPG----------VGKTSLAHALANDYGWEVIELNASDQRTADVI 81 (482)
T ss_pred HHHhcCCHHH-HHHHHHHHHHHhcCCCCCeEEEECCCC----------CCHHHHHHHHHHHcCCCEEEEcccccccHHHH
Confidence 3579999999 99999998642 22256677788100 1122333333333321110000 000011111
Q ss_pred HHHHHHH-----cC-CceEEEEEecCCCh------hhHHHHhhhcCCCCCCcEEEEecccCc-E-----------EecCC
Q 007787 169 KTALHDY-----LK-NKRYLIVLYDVFTN------DVWDYLGEALPDHQNGSRVLVILFDDE-I-----------FNLCI 224 (589)
Q Consensus 169 ~~~l~~~-----L~-~kr~LlVLDDvw~~------~~w~~l~~~l~~~~~gs~IivTTR~~~-v-----------~~l~~ 224 (589)
...+... +. .++-+||+|++... ..+..+...+.. .+..||+|+.... + +.+.+
T Consensus 82 ~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~ 159 (482)
T PRK04195 82 ERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKR 159 (482)
T ss_pred HHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecC
Confidence 1111111 11 36778999999764 235666555542 2344555553321 1 77888
Q ss_pred CChHHHHHhhcccc
Q 007787 225 LENEDMINLDSVPA 238 (589)
Q Consensus 225 L~~~~~~~Lf~~~a 238 (589)
++.++....+.+.+
T Consensus 160 ~~~~~i~~~L~~i~ 173 (482)
T PRK04195 160 LSTRSIVPVLKRIC 173 (482)
T ss_pred CCHHHHHHHHHHHH
Confidence 88887777666543
No 136
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=37.94 E-value=46 Score=36.17 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=46.1
Q ss_pred CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEE-EecccCcE----------EecCCCChHHHHHhhcccc
Q 007787 177 KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVL-VILFDDEI----------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 177 ~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~Ii-vTTR~~~v----------~~l~~L~~~~~~~Lf~~~a 238 (589)
.+++-++|+|+++.. ..|+.+...+..-...+++| +||+.+.+ +++.+++.++..+.+.+.+
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~ 200 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYIT 200 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHH
Confidence 456778999999875 57888887776554555654 55555555 8999999999988887665
No 137
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.68 E-value=1.8e+02 Score=30.09 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=75.2
Q ss_pred CCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCc---------------
Q 007787 92 RDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSA--------------- 156 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~--------------- 156 (589)
-++++|-+.. ++.+.+.+..+. -...+-++|.- ...-..+.+.+++.+.....
T Consensus 15 ~~~iiGq~~~-~~~l~~~~~~~~-~~h~~L~~Gp~----------G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 15 FRDIIGQKHI-VTAISNGLSLGR-IHHAWLLSGTR----------GVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred hhhccChHHH-HHHHHHHHHcCC-CCeEEEEecCC----------CCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4578999998 888888887543 22334455511 12234455555555532100
Q ss_pred ----ccc---cc---ccCHHHHHHHHHHHc-----CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEeccc-Cc
Q 007787 157 ----FRE---IL---YKDFEKRKTALHDYL-----KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFD-DE 218 (589)
Q Consensus 157 ----~~~---~~---~~~~~~~~~~l~~~L-----~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~-~~ 218 (589)
.++ .+ ....++. +.+.+.+ .+++-++|+|++... ..++.+...+.......++|++|.+ ..
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred hcCCCCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 000 00 0122222 2333332 245558999999765 3677777777655556666666543 33
Q ss_pred E----------EecCCCChHHHHHhhccc
Q 007787 219 I----------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 219 v----------~~l~~L~~~~~~~Lf~~~ 237 (589)
+ +++.+++.++..+.+.+.
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~ 190 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYI 190 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHH
Confidence 3 999999999887766653
No 138
>PRK08727 hypothetical protein; Validated
Probab=36.62 E-value=35 Score=32.90 Aligned_cols=59 Identities=12% Similarity=-0.038 Sum_probs=38.9
Q ss_pred EEEEEecCCCh---hhHHHH-hhhcCC-CCCCcEEEEecccCcE------------------EecCCCChHHHHHhhccc
Q 007787 181 YLIVLYDVFTN---DVWDYL-GEALPD-HQNGSRVLVILFDDEI------------------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 181 ~LlVLDDvw~~---~~w~~l-~~~l~~-~~~gs~IivTTR~~~v------------------~~l~~L~~~~~~~Lf~~~ 237 (589)
-+||+||+-.. ..|... ...+.. ..+|..||+|++..-- +++++++.++-..++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 48999998643 234432 222221 1346679999885322 899999999999988876
Q ss_pred cC
Q 007787 238 AT 239 (589)
Q Consensus 238 a~ 239 (589)
+.
T Consensus 175 a~ 176 (233)
T PRK08727 175 AQ 176 (233)
T ss_pred HH
Confidence 54
No 139
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=36.06 E-value=61 Score=33.41 Aligned_cols=79 Identities=8% Similarity=0.047 Sum_probs=50.5
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcE-EEEecccCcE----------EecCCCChHHHHHhhccccCCCC--
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSR-VLVILFDDEI----------FNLCILENEDMINLDSVPATPLR-- 242 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~-IivTTR~~~v----------~~l~~L~~~~~~~Lf~~~a~~~~-- 242 (589)
+++-++|+|++... ...+.+...+-.-..... |++|++...+ +++.++++++..+.+.+......
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~ 219 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSD 219 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCC
Confidence 46668999999754 456666666544333344 4555444444 99999999999998887432222
Q ss_pred CC--------CCCCchhhhccc
Q 007787 243 AT--------YQERPLVCLYYG 256 (589)
Q Consensus 243 ~~--------c~glPlai~~~g 256 (589)
.. ++|.|..+..+.
T Consensus 220 ~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 220 GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 11 888886554433
No 140
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.97 E-value=1.7e+02 Score=33.00 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=42.7
Q ss_pred CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEeccc-CcE----------EecCCCChHHHHHhhcccc
Q 007787 177 KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFD-DEI----------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 177 ~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~-~~v----------~~l~~L~~~~~~~Lf~~~a 238 (589)
.+++-++|+|++-.. ...+.+...+..-..+.++|++|.+ ..+ +++++++.++..+.+.+.+
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAIL 190 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHH
Confidence 356668889999754 5677777776654456676666654 333 9999999998877665543
No 141
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=34.04 E-value=1.8e+02 Score=32.42 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=36.9
Q ss_pred EEEEecCCCh---hhHH-HHhhhcCC-CCCCcEEEEecccCc-----E-------------EecCCCChHHHHHhhcccc
Q 007787 182 LIVLYDVFTN---DVWD-YLGEALPD-HQNGSRVLVILFDDE-----I-------------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 182 LlVLDDvw~~---~~w~-~l~~~l~~-~~~gs~IivTTR~~~-----v-------------~~l~~L~~~~~~~Lf~~~a 238 (589)
+|||||+... +.|+ .+...+.. ...|..|||||+..- + +.++..+.+.-..++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7889999654 2332 22233321 133567888887631 1 8888889888888888775
Q ss_pred C
Q 007787 239 T 239 (589)
Q Consensus 239 ~ 239 (589)
-
T Consensus 460 ~ 460 (617)
T PRK14086 460 V 460 (617)
T ss_pred H
Confidence 4
No 142
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.39 E-value=5.4e+02 Score=29.10 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=43.2
Q ss_pred CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcE-EEEecccCcE----------EecCCCChHHHHHhhccc
Q 007787 177 KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSR-VLVILFDDEI----------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 177 ~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~-IivTTR~~~v----------~~l~~L~~~~~~~Lf~~~ 237 (589)
.++.-++|+|++... ..++.+...+-.-....+ |++||....+ ++++.++.++..+.+.+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~I 195 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAI 195 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 355668999999755 577887777654333444 5666666666 999999999988776643
No 143
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=31.88 E-value=3.8e+02 Score=27.26 Aligned_cols=135 Identities=10% Similarity=0.072 Sum_probs=73.4
Q ss_pred CCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCc---------------
Q 007787 92 RDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSA--------------- 156 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~--------------- 156 (589)
-.+++|.+.. ++.+.+++..+. -...+-++|.= ......+.+.+.+.+.....
T Consensus 13 ~~~iig~~~~-~~~l~~~~~~~~-~~~~~Ll~G~~----------G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 13 FEDVIGQEHI-VQTLKNAIKNGR-IAHAYLFSGPR----------GTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred HhhccCcHHH-HHHHHHHHHcCC-CCeEEEEECCC----------CCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4578999999 999999886543 12233445500 23345555555555542110
Q ss_pred ----ccc---ccc---cCH---HHHHHHHHHH-cCCceEEEEEecCCC--hhhHHHHhhhcCCCCCCcEEEEecccCc-E
Q 007787 157 ----FRE---ILY---KDF---EKRKTALHDY-LKNKRYLIVLYDVFT--NDVWDYLGEALPDHQNGSRVLVILFDDE-I 219 (589)
Q Consensus 157 ----~~~---~~~---~~~---~~~~~~l~~~-L~~kr~LlVLDDvw~--~~~w~~l~~~l~~~~~gs~IivTTR~~~-v 219 (589)
.++ .+. ... .++...+... ..+++-++|+|++.. ....+.+...+......+.+|++|.+.. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l 160 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHH
Confidence 000 011 122 2222222211 234555888998744 3567777777755445666666654322 2
Q ss_pred ----------EecCCCChHHHHHhhcccc
Q 007787 220 ----------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 220 ----------~~l~~L~~~~~~~Lf~~~a 238 (589)
+++.++++++..+.+...+
T Consensus 161 ~~~l~sr~~~~~~~~~~~~~l~~~l~~~~ 189 (355)
T TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKIL 189 (355)
T ss_pred HHHHHhheeEEEcCCCCHHHHHHHHHHHH
Confidence 7888888888777666543
No 144
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.53 E-value=4.4e+02 Score=30.99 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=42.6
Q ss_pred CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEE-ecccCcE----------EecCCCChHHHHHhhccc
Q 007787 177 KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLV-ILFDDEI----------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 177 ~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~Iiv-TTR~~~v----------~~l~~L~~~~~~~Lf~~~ 237 (589)
.+++-++|+|++-.. ...+.+...+-.-....++|. ||....+ |++++|+.++....+.+.
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~i 190 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHI 190 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHH
Confidence 456778999998654 677887776654334455444 4444445 999999999988777663
No 145
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.97 E-value=24 Score=37.97 Aligned_cols=64 Identities=28% Similarity=0.322 Sum_probs=35.3
Q ss_pred CCCCCCeEEEeeCCCCCCCCcee-cCCC-CCCCCCccEEEEEeecCCCCCCCCcc--cccccceeEEecCccc
Q 007787 437 EFELLESLKLVNELKIPSQLSSI-VLPE-YQFPPSLIELSLANTELRDDPMPKPK--KLLHLQVLKLKKNSFI 505 (589)
Q Consensus 437 ~l~~L~~L~l~~~~~lp~~L~~L-~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~~~ 505 (589)
+.+.+.++.+++|. |..| .+.. ....|+|..|+|++|...-.....+. +..-|+.|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNr-----L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-----LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccch-----hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 66777777777763 3333 2333 44567788888888731111111222 1244677777777664
No 146
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.94 E-value=6.5e+02 Score=25.84 Aligned_cols=135 Identities=10% Similarity=0.091 Sum_probs=73.6
Q ss_pred CCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCC-----c-c-c---cc-
Q 007787 92 RDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQS-----A-F-R---EI- 160 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~-----~-~-~---~~- 160 (589)
-++++|.+.. .+.+.+++..+. -...+-++|.= ......+.+.+...+.... . . . +.
T Consensus 16 ~~~iig~~~~-~~~l~~~i~~~~-~~~~~L~~G~~----------G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~ 83 (367)
T PRK14970 16 FDDVVGQSHI-TNTLLNAIENNH-LAQALLFCGPR----------GVGKTTCARILARKINQPGYDDPNEDFSFNIFELD 83 (367)
T ss_pred HHhcCCcHHH-HHHHHHHHHcCC-CCeEEEEECCC----------CCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec
Confidence 4578999999 999999887643 23455567711 1224455555555554310 0 0 0 01
Q ss_pred --cccCHHHHHHHHHH----HcCCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEec-ccCcE----------Ee
Q 007787 161 --LYKDFEKRKTALHD----YLKNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVIL-FDDEI----------FN 221 (589)
Q Consensus 161 --~~~~~~~~~~~l~~----~L~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTT-R~~~v----------~~ 221 (589)
.....+++...+.+ -..+++-++++|++... ..++.+...+......+.+|++| ..+.+ ++
T Consensus 84 ~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~ 163 (367)
T PRK14970 84 AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFD 163 (367)
T ss_pred cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEe
Confidence 11112333222221 12345557999988543 45777766554433345555544 33333 88
Q ss_pred cCCCChHHHHHhhcccc
Q 007787 222 LCILENEDMINLDSVPA 238 (589)
Q Consensus 222 l~~L~~~~~~~Lf~~~a 238 (589)
..++++++....+...+
T Consensus 164 ~~~~~~~~l~~~l~~~~ 180 (367)
T PRK14970 164 FKRITIKDIKEHLAGIA 180 (367)
T ss_pred cCCccHHHHHHHHHHHH
Confidence 88888888777766543
No 147
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=28.43 E-value=2.1e+02 Score=32.16 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=41.7
Q ss_pred CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcE-EEEecccCcE----------EecCCCChHHHHHhhccc
Q 007787 177 KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSR-VLVILFDDEI----------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 177 ~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~-IivTTR~~~v----------~~l~~L~~~~~~~Lf~~~ 237 (589)
.+++-++|+|++... ...+.+...+-.-....+ |++||....+ |+++.++.++....+.+.
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~i 190 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHI 190 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHH
Confidence 456668999999654 567777666654333444 4455555555 999999999988777653
No 148
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=28.37 E-value=90 Score=28.54 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCceE-EEEEecCCCh-----hhHHHHhhhcCCCCCCcEEEEecccC
Q 007787 168 RKTALHDYLKNKRY-LIVLYDVFTN-----DVWDYLGEALPDHQNGSRVLVILFDD 217 (589)
Q Consensus 168 ~~~~l~~~L~~kr~-LlVLDDvw~~-----~~w~~l~~~l~~~~~gs~IivTTR~~ 217 (589)
.-...++.+...+| ++|||.+-.. -..+++...+.....+.-||+|-|..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 34455566655555 9999998533 35567777776666677899999975
No 149
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=28.08 E-value=1.1e+02 Score=28.59 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCceE-EEEEecCCCh-----hhHHHHhhhcCCCCCCcEEEEecccCc
Q 007787 168 RKTALHDYLKNKRY-LIVLYDVFTN-----DVWDYLGEALPDHQNGSRVLVILFDDE 218 (589)
Q Consensus 168 ~~~~l~~~L~~kr~-LlVLDDvw~~-----~~w~~l~~~l~~~~~gs~IivTTR~~~ 218 (589)
.-...++.+...+| ++|||.+-.. -..+++...+.....+.-||+|-|...
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 34455566655555 9999999543 357777777766666779999999743
No 150
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.47 E-value=26 Score=37.67 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=54.1
Q ss_pred CCCCCccEEEEEeecCCCCC-CCCc-ccccccceeEEecC--cccCceeeEecCCCCCCCccccCcccccccceeeEeec
Q 007787 465 QFPPSLIELSLANTELRDDP-MPKP-KKLLHLQVLKLKKN--SFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPC 540 (589)
Q Consensus 465 ~~l~~L~~L~L~~n~l~~~~-~~~l-~~l~~L~~L~L~~n--~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n 540 (589)
.+.+.+..+.|++|++.... ...+ ...|+|+.|+|++| .+.... .+ .--....|+.|-+.+|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~------el--------~K~k~l~Leel~l~GN 280 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES------EL--------DKLKGLPLEELVLEGN 280 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh------hh--------hhhcCCCHHHeeecCC
Confidence 35678999999999975421 2222 35699999999988 222111 11 1123456999999999
Q ss_pred CCCCCCcc---cc----ccCCCCCEEEEeCCc
Q 007787 541 AHLKRLPE---DL----WRVKSLTKLELWWPR 565 (589)
Q Consensus 541 ~~l~~lp~---~l----~~l~~L~~L~l~~~~ 565 (589)
|+.+..-. -+ ..+|.|..||=..-+
T Consensus 281 Plc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 281 PLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQ 312 (585)
T ss_pred ccccchhhhHHHHHHHHHhcchheeecCcccC
Confidence 99765321 11 256888777644433
No 151
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=26.39 E-value=38 Score=32.03 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=27.0
Q ss_pred CceEEEEEecCCCh---hhHHHHhhhcCCCCCCcEEEEecccCcE
Q 007787 178 NKRYLIVLYDVFTN---DVWDYLGEALPDHQNGSRVLVILFDDEI 219 (589)
Q Consensus 178 ~kr~LlVLDDvw~~---~~w~~l~~~l~~~~~gs~IivTTR~~~v 219 (589)
+.--++|||||... .....+...+....+.+.+||||-.+.+
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~ 201 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEM 201 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34458899999765 4566666666655567889999877654
No 152
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=25.65 E-value=1.1e+02 Score=28.31 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=36.6
Q ss_pred HHHHHHcCCceE-EEEEecCCCh-----hhHHHHhhhcCCCCCCcEEEEecccCc
Q 007787 170 TALHDYLKNKRY-LIVLYDVFTN-----DVWDYLGEALPDHQNGSRVLVILFDDE 218 (589)
Q Consensus 170 ~~l~~~L~~kr~-LlVLDDvw~~-----~~w~~l~~~l~~~~~gs~IivTTR~~~ 218 (589)
..-++.+.+.+| |+|||.+--. -.++++...+.......-||+|-|...
T Consensus 112 ~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap 166 (198)
T COG2109 112 EHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAP 166 (198)
T ss_pred HHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCC
Confidence 445566667666 9999998433 578888888887677789999998744
No 153
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=25.40 E-value=1.3e+02 Score=27.71 Aligned_cols=50 Identities=14% Similarity=-0.031 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCce-EEEEEecCCCh-----hhHHHHhhhcCCCCCCcEEEEecccC
Q 007787 168 RKTALHDYLKNKR-YLIVLYDVFTN-----DVWDYLGEALPDHQNGSRVLVILFDD 217 (589)
Q Consensus 168 ~~~~l~~~L~~kr-~LlVLDDvw~~-----~~w~~l~~~l~~~~~gs~IivTTR~~ 217 (589)
.-+..++.+.... =|+|||.+-.. -..+++...+.....+.-||+|-|..
T Consensus 103 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 103 LWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3345555665544 49999998543 35677777776666778899999974
No 154
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=25.22 E-value=58 Score=30.80 Aligned_cols=57 Identities=25% Similarity=0.277 Sum_probs=35.7
Q ss_pred EEEEEecCCChh---hH-HHHhhhcCC-CCCCcEEEEecccCc------------------EEecCCCChHHHHHhhccc
Q 007787 181 YLIVLYDVFTND---VW-DYLGEALPD-HQNGSRVLVILFDDE------------------IFNLCILENEDMINLDSVP 237 (589)
Q Consensus 181 ~LlVLDDvw~~~---~w-~~l~~~l~~-~~~gs~IivTTR~~~------------------v~~l~~L~~~~~~~Lf~~~ 237 (589)
-+||+||+.... .| +.+...+.. ...+.+||+||+... ++++.++++++...++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 389999997652 33 334444332 123457888887421 1778888888878777653
No 155
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=25.13 E-value=1.1e+02 Score=32.12 Aligned_cols=77 Identities=12% Similarity=-0.040 Sum_probs=47.6
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEeccc-CcE----------EecCCCChHHHHHhhccccCCCCCC
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFD-DEI----------FNLCILENEDMINLDSVPATPLRAT 244 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~-~~v----------~~l~~L~~~~~~~Lf~~~a~~~~~~ 244 (589)
+++-++++||+... ...+.+...+-.-..+..+|++|.+ ..+ +.+..++.++..+.+..........
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~~~~ 195 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVDPET 195 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCCHHH
Confidence 44557788999654 4556666666544445655555544 444 9999999999988887542211111
Q ss_pred -------CCCCchhhhc
Q 007787 245 -------YQERPLVCLY 254 (589)
Q Consensus 245 -------c~glPlai~~ 254 (589)
++|.|..+..
T Consensus 196 a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 196 ARRAARASQGHIGRARR 212 (394)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 7777754433
No 156
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=25.10 E-value=3.6e+02 Score=28.32 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=42.4
Q ss_pred cCCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccCcE--------------EecCCCChHHHHHhhcc
Q 007787 176 LKNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDDEI--------------FNLCILENEDMINLDSV 236 (589)
Q Consensus 176 L~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~~v--------------~~l~~L~~~~~~~Lf~~ 236 (589)
..++|.++.+|.|-.- .+=+. .+|.-..|.-|+|-+-.++- |.+++|+.+|-.++..+
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 4589999999999644 22232 34556778888875444443 99999999999999887
No 157
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=24.29 E-value=2e+02 Score=32.07 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=39.0
Q ss_pred ceEEEEEecCCC--hhhHHHHhhhcCCCCCCcEEE-EecccCcE----------EecCCCChHHHHHhhccc
Q 007787 179 KRYLIVLYDVFT--NDVWDYLGEALPDHQNGSRVL-VILFDDEI----------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 179 kr~LlVLDDvw~--~~~w~~l~~~l~~~~~gs~Ii-vTTR~~~v----------~~l~~L~~~~~~~Lf~~~ 237 (589)
++=++|+|++.. ...++.+...+-.-.....+| +||....+ +++.++++++....+...
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~i 190 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSI 190 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHH
Confidence 334699999865 367777777665444455554 44444444 899999999887766653
No 158
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=23.92 E-value=99 Score=28.43 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=21.0
Q ss_pred HcCCceEEEEEecCCCh-hhHHHHhhhcCCCC
Q 007787 175 YLKNKRYLIVLYDVFTN-DVWDYLGEALPDHQ 205 (589)
Q Consensus 175 ~L~~kr~LlVLDDvw~~-~~w~~l~~~l~~~~ 205 (589)
.+++|++||| |||-+. .........+...+
T Consensus 94 ~v~gk~VLIV-DDIidTG~Tl~~~~~~Lk~~G 124 (181)
T PRK09162 94 SLKGRTVLVV-DDILDEGHTLAAIRDRCLEMG 124 (181)
T ss_pred CCCCCEEEEE-ccccCcHHHHHHHHHHHHhCC
Confidence 3567777776 999877 56777777676544
No 159
>PRK08084 DNA replication initiation factor; Provisional
Probab=23.80 E-value=64 Score=31.09 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=37.9
Q ss_pred EEEEEecCCCh---hhHHHHh-hhcCC-CCCC-cEEEEecccCcE------------------EecCCCChHHHHHhhcc
Q 007787 181 YLIVLYDVFTN---DVWDYLG-EALPD-HQNG-SRVLVILFDDEI------------------FNLCILENEDMINLDSV 236 (589)
Q Consensus 181 ~LlVLDDvw~~---~~w~~l~-~~l~~-~~~g-s~IivTTR~~~v------------------~~l~~L~~~~~~~Lf~~ 236 (589)
-++++||+-.. ..|+... ..+.. ...| .++|+||+...- +++++++.++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 37889999543 3555432 22221 1234 478899885421 89999999988888877
Q ss_pred ccC
Q 007787 237 PAT 239 (589)
Q Consensus 237 ~a~ 239 (589)
++.
T Consensus 179 ~a~ 181 (235)
T PRK08084 179 RAR 181 (235)
T ss_pred HHH
Confidence 553
No 160
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.42 E-value=4.2e+02 Score=30.43 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=17.6
Q ss_pred CCccccchhhHHHHHHHHHcCC
Q 007787 93 DNMMSLQDDAMVELLDQLIEGP 114 (589)
Q Consensus 93 ~~~vGr~~~~~~~i~~~L~~~~ 114 (589)
+.++||+.+ .++++..|....
T Consensus 182 ~~~igr~~e-i~~~~~~L~~~~ 202 (731)
T TIGR02639 182 DPLIGREDE-LERTIQVLCRRK 202 (731)
T ss_pred CcccCcHHH-HHHHHHHHhcCC
Confidence 479999999 999999887653
No 161
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.00 E-value=9.3e+02 Score=26.57 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=41.4
Q ss_pred CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEE-EecccCcE----------EecCCCChHHHHHhhcc
Q 007787 177 KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVL-VILFDDEI----------FNLCILENEDMINLDSV 236 (589)
Q Consensus 177 ~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~Ii-vTTR~~~v----------~~l~~L~~~~~~~Lf~~ 236 (589)
.+++-++|+|++... ..++.+...+-.....+++| +||....+ +++++++.++....+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKI 189 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHH
Confidence 356668999998644 56778877776554455554 55554444 89999999987666554
No 162
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.08 E-value=4e+02 Score=28.76 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=42.4
Q ss_pred CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcE-EEEecccCcE----------EecCCCChHHHHHhhcccc
Q 007787 177 KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSR-VLVILFDDEI----------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 177 ~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~-IivTTR~~~v----------~~l~~L~~~~~~~Lf~~~a 238 (589)
.++.-++|+|++... ..++.+...+-.-..... |+.||....+ |.+.+++.++..+.+.+.+
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence 345668999999754 578888777644333444 3456655555 9999999988877766543
No 163
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=22.04 E-value=1e+02 Score=29.81 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=10.3
Q ss_pred ceEEEEEecCCC
Q 007787 179 KRYLIVLYDVFT 190 (589)
Q Consensus 179 kr~LlVLDDvw~ 190 (589)
.++|||+||+-.
T Consensus 98 ~~~LiIlDD~~~ 109 (241)
T PF04665_consen 98 PRFLIILDDLGD 109 (241)
T ss_pred CCeEEEEeCCCC
Confidence 399999999965
No 164
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=21.77 E-value=1.5e+02 Score=30.36 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=50.7
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEeccc-CcE----------EecCCCChHHHHHhhccccCCCCCC
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFD-DEI----------FNLCILENEDMINLDSVPATPLRAT 244 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~-~~v----------~~l~~L~~~~~~~Lf~~~a~~~~~~ 244 (589)
+++=++|+||.... ..+..+...+-.-..++.+|.+|.. ..+ +.+.+++.++..+.+..........
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~~~~~~ 210 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGVADADA 210 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCCChHHH
Confidence 44457778998765 6788888777655556665555444 444 9999999999988887652221111
Q ss_pred ----CCCCchhhhc
Q 007787 245 ----YQERPLVCLY 254 (589)
Q Consensus 245 ----c~glPlai~~ 254 (589)
++|.|..+..
T Consensus 211 ~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 211 LLAEAGGAPLAALA 224 (342)
T ss_pred HHHHcCCCHHHHHH
Confidence 7788864433
No 165
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=21.48 E-value=1.6e+02 Score=26.85 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCceE-EEEEecCCCh-----hhHHHHhhhcCCCCCCcEEEEecccCc
Q 007787 168 RKTALHDYLKNKRY-LIVLYDVFTN-----DVWDYLGEALPDHQNGSRVLVILFDDE 218 (589)
Q Consensus 168 ~~~~l~~~L~~kr~-LlVLDDvw~~-----~~w~~l~~~l~~~~~gs~IivTTR~~~ 218 (589)
.-+..++.+....| |||||.+-.. -..+++...+.......-||+|-|...
T Consensus 84 ~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 84 GLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred HHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 34556666766555 9999998433 356777777766667889999999753
No 166
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=20.43 E-value=3e+02 Score=28.02 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=49.0
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccC-cE----------EecCCCChHHHHHhhccccCCCCCC
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDD-EI----------FNLCILENEDMINLDSVPATPLRAT 244 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~-~v----------~~l~~L~~~~~~~Lf~~~a~~~~~~ 244 (589)
+++=.+|+|++... .....+...+-.-..+..+|++|... .+ +.+.++++++..+.+..........
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~~~~ 185 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAEISE 185 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccChHH
Confidence 45557778998765 56677766665544455655555443 33 9999999999988777654222111
Q ss_pred -------CCCCchhhh
Q 007787 245 -------YQERPLVCL 253 (589)
Q Consensus 245 -------c~glPlai~ 253 (589)
++|.|..+.
T Consensus 186 ~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 186 ILTALRINYGRPLLAL 201 (325)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 888886443
No 167
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=20.29 E-value=8.9e+02 Score=25.91 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=38.4
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEec-ccCcE----------EecCCCChHHHHHhhccc
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVIL-FDDEI----------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTT-R~~~v----------~~l~~L~~~~~~~Lf~~~ 237 (589)
+++-++|+|++... ...+.+...+..-.....+|++| +.+.+ +++..+++++....+.+.
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~ 192 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALI 192 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHH
Confidence 55667889988543 45666666655444455555554 33333 889999999877666553
Done!