Query 007787
Match_columns 589
No_of_seqs 519 out of 3825
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 10:29:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-29 4.8E-34 276.2 14.9 210 96-318 131-419 (549)
2 4fcg_A Uncharacterized protein 99.9 2.7E-25 9.1E-30 226.8 16.6 215 323-565 84-312 (328)
3 1vt4_I APAF-1 related killer D 99.9 2.7E-24 9.3E-29 239.1 9.5 210 94-315 129-400 (1221)
4 3sfz_A APAF-1, apoptotic pepti 99.9 1.6E-23 5.6E-28 250.6 15.5 217 89-314 120-407 (1249)
5 4fcg_A Uncharacterized protein 99.9 1.6E-22 5.4E-27 206.3 15.4 201 341-565 79-288 (328)
6 1ogq_A PGIP-2, polygalacturona 99.9 6.7E-23 2.3E-27 207.7 11.9 227 323-565 53-302 (313)
7 3rgz_A Protein brassinosteroid 99.9 1.1E-22 3.8E-27 231.1 14.9 246 323-588 421-764 (768)
8 2z66_A Variable lymphocyte rec 99.9 2.1E-22 7E-27 203.3 12.1 218 323-565 31-259 (306)
9 1ogq_A PGIP-2, polygalacturona 99.9 5.4E-23 1.8E-27 208.4 6.6 203 323-547 79-308 (313)
10 3zyi_A Leucine-rich repeat-con 99.9 9.8E-22 3.4E-26 209.6 15.2 217 323-565 78-301 (452)
11 3zyj_A Leucine-rich repeat-con 99.9 1.3E-21 4.5E-26 207.9 15.7 217 323-565 67-290 (440)
12 1ozn_A Reticulon 4 receptor; N 99.9 6.4E-21 2.2E-25 190.4 15.8 214 323-565 14-236 (285)
13 2id5_A Lingo-1, leucine rich r 99.8 6.2E-21 2.1E-25 204.8 16.4 236 323-565 59-331 (477)
14 3oja_B Anopheles plasmodium-re 99.8 8.2E-21 2.8E-25 209.6 17.5 236 323-565 78-356 (597)
15 3o6n_A APL1; leucine-rich repe 99.8 1.3E-20 4.4E-25 197.0 18.0 236 323-565 72-350 (390)
16 3rgz_A Protein brassinosteroid 99.8 4.7E-21 1.6E-25 217.8 15.6 231 323-565 371-691 (768)
17 3v47_A TOLL-like receptor 5B a 99.8 7E-21 2.4E-25 203.0 16.0 240 323-565 57-406 (455)
18 1xku_A Decorin; proteoglycan, 99.8 7.6E-21 2.6E-25 194.0 15.1 221 323-566 55-305 (330)
19 2id5_A Lingo-1, leucine rich r 99.8 2.5E-20 8.6E-25 200.1 17.9 236 323-565 35-307 (477)
20 4eco_A Uncharacterized protein 99.8 1.2E-20 4E-25 209.8 14.2 234 323-565 308-598 (636)
21 2ft3_A Biglycan; proteoglycan, 99.8 3.3E-20 1.1E-24 189.4 15.8 219 323-565 57-305 (332)
22 4eco_A Uncharacterized protein 99.8 8.1E-21 2.8E-25 211.1 11.9 239 323-565 209-547 (636)
23 2z80_A TOLL-like receptor 2, v 99.8 1.3E-20 4.6E-25 194.1 12.4 230 323-565 55-312 (353)
24 3o6n_A APL1; leucine-rich repe 99.8 2.7E-20 9.2E-25 194.5 14.4 233 323-565 48-329 (390)
25 3t6q_A CD180 antigen; protein- 99.8 5.1E-20 1.7E-24 203.7 16.8 236 323-565 257-558 (606)
26 2ft3_A Biglycan; proteoglycan, 99.8 7.5E-20 2.6E-24 186.8 16.2 217 323-565 36-275 (332)
27 4fmz_A Internalin; leucine ric 99.8 1E-19 3.6E-24 186.8 16.4 226 323-565 69-322 (347)
28 4ecn_A Leucine-rich repeat pro 99.8 5.9E-20 2E-24 208.5 15.2 99 323-422 451-585 (876)
29 4ecn_A Leucine-rich repeat pro 99.8 5.8E-20 2E-24 208.6 14.9 232 323-565 551-838 (876)
30 3oja_B Anopheles plasmodium-re 99.8 6.1E-20 2.1E-24 202.6 14.4 232 323-565 54-335 (597)
31 4g8a_A TOLL-like receptor 4; l 99.8 9E-20 3.1E-24 202.4 15.1 98 323-421 79-184 (635)
32 3vq2_A TLR4, TOLL-like recepto 99.8 8.2E-20 2.8E-24 202.1 14.6 75 323-397 83-161 (606)
33 3j0a_A TOLL-like receptor 5; m 99.8 6.3E-19 2.2E-23 202.3 22.2 106 323-429 51-167 (844)
34 3t6q_A CD180 antigen; protein- 99.8 9.8E-20 3.3E-24 201.5 14.9 218 323-546 281-563 (606)
35 2z66_A Variable lymphocyte rec 99.8 3.6E-20 1.2E-24 186.8 10.3 215 323-565 10-234 (306)
36 2z62_A TOLL-like receptor 4, v 99.8 1.6E-19 5.6E-24 179.2 13.4 213 325-565 12-235 (276)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.8E-19 6.1E-24 197.6 14.6 124 437-565 351-508 (562)
38 1ziw_A TOLL-like receptor 3; i 99.8 1.8E-19 6.1E-24 202.1 13.9 238 323-565 52-364 (680)
39 1ozn_A Reticulon 4 receptor; N 99.8 2.8E-19 9.7E-24 178.4 13.7 196 323-545 35-240 (285)
40 1wwl_A Monocyte differentiatio 99.8 1.5E-20 5.2E-25 190.2 4.5 213 323-565 66-307 (312)
41 1o6v_A Internalin A; bacterial 99.8 5.7E-19 2E-23 188.9 16.9 72 323-397 71-142 (466)
42 2o6q_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 172.8 16.9 191 323-565 19-216 (270)
43 1z6t_A APAF-1, apoptotic prote 99.8 2.5E-19 8.5E-24 197.6 13.6 214 90-314 121-407 (591)
44 3vq2_A TLR4, TOLL-like recepto 99.8 1.8E-19 6.1E-24 199.3 12.6 201 339-565 346-556 (606)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.9E-19 2E-23 193.4 16.4 89 465-565 350-439 (562)
46 2z7x_B TOLL-like receptor 1, v 99.8 3.4E-19 1.2E-23 193.4 14.3 43 523-565 367-410 (520)
47 2z80_A TOLL-like receptor 2, v 99.8 2.7E-19 9.2E-24 184.3 12.7 215 323-565 34-288 (353)
48 1xku_A Decorin; proteoglycan, 99.8 9E-19 3.1E-23 178.6 16.2 218 323-564 79-329 (330)
49 2z7x_B TOLL-like receptor 1, v 99.8 1.8E-18 6E-23 187.8 18.7 117 323-450 24-149 (520)
50 3zyi_A Leucine-rich repeat-con 99.8 7.1E-19 2.4E-23 187.4 15.0 213 323-565 57-277 (452)
51 4fmz_A Internalin; leucine ric 99.8 9.6E-19 3.3E-23 179.6 15.0 225 323-565 91-344 (347)
52 2z81_A CD282 antigen, TOLL-lik 99.8 2.7E-19 9.3E-24 195.4 11.4 239 323-565 53-421 (549)
53 3oja_A Leucine-rich immune mol 99.8 2.3E-19 7.7E-24 192.8 10.2 209 323-565 37-248 (487)
54 3bz5_A Internalin-J, INLJ; leu 99.8 2.5E-18 8.4E-23 183.2 17.3 168 323-507 67-248 (457)
55 3zyj_A Leucine-rich repeat-con 99.8 1.3E-18 4.6E-23 184.6 15.1 213 323-565 46-266 (440)
56 3o53_A Protein LRIM1, AGAP0063 99.8 2.2E-19 7.4E-24 182.2 8.5 209 323-565 37-248 (317)
57 3bz5_A Internalin-J, INLJ; leu 99.8 2.7E-18 9.2E-23 182.9 16.4 204 323-561 45-261 (457)
58 3v47_A TOLL-like receptor 5B a 99.8 2.5E-18 8.6E-23 183.2 14.5 237 323-565 33-382 (455)
59 1p9a_G Platelet glycoprotein I 99.8 4.8E-18 1.6E-22 169.9 15.3 194 340-565 7-206 (290)
60 3rfs_A Internalin B, repeat mo 99.8 1.8E-18 6E-23 171.4 11.8 216 304-556 18-248 (272)
61 1ziw_A TOLL-like receptor 3; i 99.8 3.7E-18 1.3E-22 191.4 15.7 218 323-565 384-620 (680)
62 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-17 5.7E-22 182.3 20.3 37 528-565 259-295 (622)
63 2z63_A TOLL-like receptor 4, v 99.8 1.3E-18 4.5E-23 190.8 10.6 218 323-565 285-529 (570)
64 1o6v_A Internalin A; bacterial 99.8 1.1E-17 3.6E-22 179.1 17.0 223 323-565 49-298 (466)
65 2z63_A TOLL-like receptor 4, v 99.7 4.4E-18 1.5E-22 186.6 14.0 98 323-421 55-160 (570)
66 1h6u_A Internalin H; cell adhe 99.7 1.6E-17 5.3E-22 167.7 13.5 185 323-544 44-231 (308)
67 2z62_A TOLL-like receptor 4, v 99.7 9.6E-18 3.3E-22 166.4 11.4 196 323-546 31-240 (276)
68 4g8a_A TOLL-like receptor 4; l 99.7 3.7E-17 1.3E-21 181.3 17.4 99 323-422 55-160 (635)
69 1jl5_A Outer protein YOPM; leu 99.7 4.5E-17 1.5E-21 173.2 17.1 220 323-565 134-407 (454)
70 1wwl_A Monocyte differentiatio 99.7 6.8E-18 2.3E-22 170.7 10.1 191 323-544 98-310 (312)
71 1h6u_A Internalin H; cell adhe 99.7 1.4E-17 4.7E-22 168.1 11.9 189 339-565 37-228 (308)
72 3j0a_A TOLL-like receptor 5; m 99.7 1.4E-16 4.9E-21 182.7 19.8 230 323-565 269-537 (844)
73 2xwt_C Thyrotropin receptor; s 99.7 3.5E-17 1.2E-21 158.7 12.5 192 323-565 34-237 (239)
74 3o53_A Protein LRIM1, AGAP0063 99.7 3.3E-18 1.1E-22 173.4 5.0 207 324-565 14-225 (317)
75 2z81_A CD282 antigen, TOLL-lik 99.7 9.4E-17 3.2E-21 175.2 16.6 220 323-565 29-262 (549)
76 3oja_A Leucine-rich immune mol 99.7 1.3E-17 4.6E-22 179.0 7.6 197 334-565 21-225 (487)
77 3rfs_A Internalin B, repeat mo 99.7 1.4E-16 4.8E-21 157.7 14.4 191 325-545 24-220 (272)
78 2o6q_A Variable lymphocyte rec 99.7 2.2E-16 7.4E-21 156.1 15.4 169 323-504 40-217 (270)
79 3m19_A Variable lymphocyte rec 99.7 9E-16 3.1E-20 149.9 15.1 169 323-506 17-193 (251)
80 4glp_A Monocyte differentiatio 99.7 4.6E-16 1.6E-20 157.0 13.1 99 323-422 94-209 (310)
81 2ca6_A RAN GTPase-activating p 99.7 3.1E-18 1.1E-22 178.5 -3.1 226 323-565 35-314 (386)
82 3g06_A SSPH2 (leucine-rich rep 99.7 4.2E-16 1.4E-20 171.3 13.5 106 437-551 179-305 (622)
83 1p9a_G Platelet glycoprotein I 99.6 7.2E-16 2.5E-20 154.0 13.5 167 323-504 34-207 (290)
84 4glp_A Monocyte differentiatio 99.6 5.6E-17 1.9E-21 163.8 5.2 214 323-565 67-305 (310)
85 2ast_B S-phase kinase-associat 99.6 7.9E-18 2.7E-22 171.9 -1.6 216 323-565 73-304 (336)
86 3m19_A Variable lymphocyte rec 99.6 1.2E-15 4.2E-20 149.0 13.9 172 343-565 14-190 (251)
87 2ast_B S-phase kinase-associat 99.6 1.2E-17 4.2E-22 170.5 -1.1 214 323-564 50-282 (336)
88 2xwt_C Thyrotropin receptor; s 99.6 1.9E-15 6.6E-20 146.4 13.5 183 332-565 23-216 (239)
89 4ay9_X Follicle-stimulating ho 99.6 5.9E-15 2E-19 151.5 15.7 213 323-564 33-256 (350)
90 1h6t_A Internalin B; cell adhe 99.6 5.7E-16 1.9E-20 154.9 7.6 182 304-506 23-214 (291)
91 2o6s_A Variable lymphocyte rec 99.6 2.9E-15 1E-19 141.8 11.8 177 323-555 10-190 (208)
92 3cvr_A Invasion plasmid antige 99.6 1.5E-15 5E-20 164.9 10.4 182 323-553 62-253 (571)
93 1jl5_A Outer protein YOPM; leu 99.6 9.8E-15 3.4E-19 155.2 16.0 154 323-505 94-250 (454)
94 1m9s_A Internalin B; cell inva 99.6 3.3E-15 1.1E-19 163.8 12.3 184 303-508 19-213 (605)
95 1m9s_A Internalin B; cell inva 99.6 1.5E-15 5.1E-20 166.6 8.4 184 325-545 26-212 (605)
96 1h6t_A Internalin B; cell adhe 99.6 1.4E-14 4.8E-19 144.7 13.6 182 326-544 30-214 (291)
97 4ezg_A Putative uncharacterize 99.5 1.5E-14 5.1E-19 135.7 10.6 149 341-505 42-194 (197)
98 3cvr_A Invasion plasmid antige 99.5 3.3E-14 1.1E-18 154.4 14.0 180 343-565 59-241 (571)
99 2ca6_A RAN GTPase-activating p 99.5 1.8E-16 6.1E-21 165.2 -3.8 215 334-565 23-285 (386)
100 3goz_A Leucine-rich repeat-con 99.5 3.5E-16 1.2E-20 161.5 -2.1 226 323-565 25-295 (362)
101 2v9t_B SLIT homolog 2 protein 99.5 6.6E-14 2.2E-18 133.8 12.4 145 323-505 14-165 (220)
102 2xot_A Amphoterin-induced prot 99.5 3.3E-14 1.1E-18 146.6 9.7 168 323-505 21-202 (361)
103 3goz_A Leucine-rich repeat-con 99.5 1.4E-15 4.7E-20 157.0 -1.4 178 323-504 54-265 (362)
104 4ay9_X Follicle-stimulating ho 99.5 1.7E-13 5.7E-18 140.7 13.6 210 323-565 12-234 (350)
105 1z7x_W Ribonuclease inhibitor; 99.5 1E-15 3.5E-20 163.2 -3.1 236 323-565 88-381 (461)
106 1dce_A Protein (RAB geranylger 99.5 3.4E-16 1.2E-20 170.6 -7.0 184 339-565 345-544 (567)
107 1xeu_A Internalin C; cellular 99.5 2.3E-14 8E-19 140.9 6.8 162 303-506 17-186 (263)
108 1z7x_W Ribonuclease inhibitor; 99.5 5.9E-16 2E-20 165.1 -5.2 226 323-565 145-409 (461)
109 2v70_A SLIT-2, SLIT homolog 2 99.5 1.2E-13 4.2E-18 131.8 11.5 149 323-506 14-167 (220)
110 3e6j_A Variable lymphocyte rec 99.5 1.8E-13 6.1E-18 131.6 12.7 149 323-506 22-173 (229)
111 4ezg_A Putative uncharacterize 99.5 1.9E-13 6.5E-18 128.1 11.1 143 323-481 47-194 (197)
112 2v9t_B SLIT homolog 2 protein 99.5 1.5E-13 5.3E-18 131.2 10.5 149 346-543 14-165 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 2.1E-13 7.1E-18 130.3 10.9 149 346-565 14-164 (220)
114 3e6j_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 129.5 12.1 50 345-396 21-71 (229)
115 2xot_A Amphoterin-induced prot 99.4 1.3E-13 4.3E-18 142.2 8.6 171 345-565 20-200 (361)
116 2o6s_A Variable lymphocyte rec 99.4 2E-13 6.8E-18 129.1 8.8 99 323-422 31-136 (208)
117 1xeu_A Internalin C; cellular 99.4 8E-13 2.7E-17 129.8 12.5 91 323-419 66-159 (263)
118 3ogk_B Coronatine-insensitive 99.4 1.7E-14 5.7E-19 158.9 0.2 74 323-396 167-250 (592)
119 1dce_A Protein (RAB geranylger 99.4 8.4E-16 2.9E-20 167.5 -11.1 197 323-561 352-567 (567)
120 4b8c_D Glucose-repressible alc 99.4 3.1E-14 1.1E-18 159.9 1.0 114 329-449 210-326 (727)
121 3ogk_B Coronatine-insensitive 99.4 5.1E-14 1.8E-18 154.9 2.2 40 526-565 484-524 (592)
122 4b8c_D Glucose-repressible alc 99.3 7.2E-13 2.5E-17 148.8 2.1 108 323-432 227-337 (727)
123 2je0_A Acidic leucine-rich nuc 99.2 5.1E-12 1.7E-16 112.5 5.8 118 323-447 20-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.2 9.4E-12 3.2E-16 113.2 7.3 97 323-421 27-131 (168)
125 1w8a_A SLIT protein; signaling 99.2 2E-11 6.7E-16 113.8 9.1 128 323-484 11-142 (192)
126 1w8a_A SLIT protein; signaling 99.2 2E-11 6.7E-16 113.8 8.8 127 346-507 11-141 (192)
127 2ell_A Acidic leucine-rich nuc 99.2 7.4E-12 2.5E-16 113.9 5.2 55 342-397 23-79 (168)
128 2wfh_A SLIT homolog 2 protein 99.2 5.2E-11 1.8E-15 111.1 10.8 125 323-482 13-140 (193)
129 2wfh_A SLIT homolog 2 protein 99.2 6.1E-11 2.1E-15 110.6 9.8 126 346-506 13-140 (193)
130 2p1m_B Transport inhibitor res 99.2 1.1E-12 3.6E-17 144.4 -4.1 239 323-566 159-493 (594)
131 3sb4_A Hypothetical leucine ri 99.1 4.1E-11 1.4E-15 121.7 7.6 211 323-561 52-328 (329)
132 2p1m_B Transport inhibitor res 99.1 7E-13 2.4E-17 145.9 -6.2 214 334-565 280-517 (594)
133 2o6r_A Variable lymphocyte rec 99.1 2.5E-10 8.6E-15 104.7 11.3 126 323-506 10-138 (177)
134 2je0_A Acidic leucine-rich nuc 99.1 1.9E-11 6.5E-16 108.8 2.9 56 341-397 15-72 (149)
135 1ds9_A Outer arm dynein; leuci 99.1 3.6E-12 1.2E-16 119.4 -2.0 92 304-397 7-101 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.1 9.9E-11 3.4E-15 107.3 6.7 97 323-422 22-125 (176)
137 1ds9_A Outer arm dynein; leuci 99.0 1.7E-11 5.9E-16 114.8 -1.7 53 344-397 24-78 (198)
138 2o6r_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 100.6 9.0 106 439-565 28-135 (177)
139 1a9n_A U2A', U2A'; complex (nu 99.0 7E-10 2.4E-14 101.6 7.0 98 323-422 45-152 (176)
140 2r9u_A Variable lymphocyte rec 99.0 1.4E-09 4.7E-14 99.5 8.8 97 323-422 15-117 (174)
141 3g39_A Variable lymphocyte rec 98.9 1.8E-09 6.1E-14 98.3 8.7 97 323-422 12-114 (170)
142 3g39_A Variable lymphocyte rec 98.9 1.7E-09 5.9E-14 98.4 8.1 102 441-565 11-113 (170)
143 2r9u_A Variable lymphocyte rec 98.9 2.7E-09 9.2E-14 97.5 8.4 101 442-565 15-116 (174)
144 4fdw_A Leucine rich hypothetic 98.9 4.1E-08 1.4E-12 102.1 16.8 208 337-574 174-387 (401)
145 3sb4_A Hypothetical leucine ri 98.9 2.2E-09 7.6E-14 108.8 6.8 220 323-565 28-308 (329)
146 4fdw_A Leucine rich hypothetic 98.8 6.7E-08 2.3E-12 100.5 15.4 206 323-565 138-356 (401)
147 2ifg_A High affinity nerve gro 98.6 5.8E-08 2E-12 98.9 8.9 97 324-422 12-115 (347)
148 2ifg_A High affinity nerve gro 98.5 8.7E-08 3E-12 97.6 6.1 91 460-565 23-114 (347)
149 3qfl_A MLA10; coiled-coil, (CC 98.4 1.9E-07 6.4E-12 78.4 5.1 34 2-35 51-84 (115)
150 3un9_A NLR family member X1; l 98.4 2.5E-09 8.5E-14 110.2 -9.4 58 323-380 75-140 (372)
151 3un9_A NLR family member X1; l 98.4 1.7E-09 5.8E-14 111.4 -11.2 161 342-508 71-255 (372)
152 2ra8_A Uncharacterized protein 98.3 1.4E-07 4.8E-12 96.4 2.3 87 466-565 250-341 (362)
153 2ra8_A Uncharacterized protein 98.3 2.1E-07 7.2E-12 95.1 3.0 73 490-573 250-328 (362)
154 3e4g_A ATP synthase subunit S, 98.0 3.5E-06 1.2E-10 76.0 4.3 92 460-565 52-150 (176)
155 3rw6_A Nuclear RNA export fact 97.7 5.7E-06 1.9E-10 80.3 0.9 80 466-561 168-258 (267)
156 1w5s_A Origin recognition comp 97.7 9.1E-05 3.1E-09 76.9 9.1 141 92-237 21-227 (412)
157 1io0_A Tropomodulin; LRR prote 97.6 1.4E-05 4.9E-10 73.3 1.6 57 323-379 39-106 (185)
158 4fs7_A Uncharacterized protein 97.6 0.00026 8.8E-09 73.1 11.3 201 337-564 156-376 (394)
159 1io0_A Tropomodulin; LRR prote 97.6 1.5E-05 5.3E-10 73.1 1.7 113 336-450 29-162 (185)
160 2qen_A Walker-type ATPase; unk 97.6 0.00015 5.1E-09 73.3 8.8 161 90-257 9-247 (350)
161 3rw6_A Nuclear RNA export fact 97.4 0.00015 5E-09 70.3 5.3 55 323-378 173-232 (267)
162 2fna_A Conserved hypothetical 97.2 0.00027 9.1E-09 71.6 5.6 157 91-257 11-251 (357)
163 3e4g_A ATP synthase subunit S, 97.1 0.00043 1.5E-08 62.3 5.2 75 323-397 64-147 (176)
164 4gt6_A Cell surface protein; l 97.1 0.0058 2E-07 62.8 14.2 40 525-566 329-369 (394)
165 2qby_B CDC6 homolog 3, cell di 97.0 0.0023 7.9E-08 65.5 10.6 141 93-237 20-209 (384)
166 2qby_A CDC6 homolog 1, cell di 96.9 0.0018 6.2E-08 66.1 8.2 142 92-237 19-209 (386)
167 1njg_A DNA polymerase III subu 96.9 0.0036 1.2E-07 59.0 9.7 136 92-239 22-199 (250)
168 4fs7_A Uncharacterized protein 96.6 0.0097 3.3E-07 61.2 11.2 186 337-559 202-393 (394)
169 2v1u_A Cell division control p 96.6 0.0071 2.4E-07 61.7 9.8 142 92-238 18-214 (387)
170 4gt6_A Cell surface protein; l 96.4 0.021 7.3E-07 58.5 12.3 86 460-564 301-388 (394)
171 4h09_A Hypothetical leucine ri 96.3 0.066 2.3E-06 54.4 15.2 35 526-562 306-341 (379)
172 1fnn_A CDC6P, cell division co 96.3 0.022 7.6E-07 58.0 11.4 143 92-238 16-206 (389)
173 3rfe_A Platelet glycoprotein I 95.9 0.0093 3.2E-07 50.8 5.6 54 323-378 11-67 (130)
174 2chg_A Replication factor C sm 95.6 0.089 3E-06 48.4 11.3 134 92-238 16-174 (226)
175 4h09_A Hypothetical leucine ri 95.0 0.16 5.4E-06 51.5 11.9 56 437-500 261-318 (379)
176 3rfe_A Platelet glycoprotein I 94.1 0.049 1.7E-06 46.2 4.7 50 346-397 11-63 (130)
177 1sxj_B Activator 1 37 kDa subu 94.1 0.15 5E-06 50.3 8.9 134 92-238 20-179 (323)
178 1pgv_A TMD-1, tropomodulin TMD 91.6 0.05 1.7E-06 49.6 1.2 57 323-379 44-111 (197)
179 1iqp_A RFCS; clamp loader, ext 91.0 0.43 1.5E-05 46.9 7.5 134 92-238 24-182 (327)
180 1pgv_A TMD-1, tropomodulin TMD 90.2 0.15 5E-06 46.6 2.9 80 339-419 37-135 (197)
181 3te6_A Regulatory protein SIR3 88.2 3.1 0.00011 40.8 11.0 140 93-238 20-211 (318)
182 1jbk_A CLPB protein; beta barr 79.9 4.7 0.00016 35.3 7.6 30 92-124 21-50 (195)
183 1jr3_A DNA polymerase III subu 76.7 12 0.00042 37.0 10.4 135 92-238 15-191 (373)
184 2chq_A Replication factor C sm 75.2 4.5 0.00015 39.2 6.6 133 93-238 17-174 (319)
185 1hqc_A RUVB; extended AAA-ATPa 65.8 9 0.00031 37.2 6.3 135 92-238 11-181 (324)
186 3u61_B DNA polymerase accessor 65.5 19 0.00065 34.9 8.6 129 91-231 24-171 (324)
187 3h4m_A Proteasome-activating n 58.4 30 0.001 32.6 8.5 138 91-239 15-202 (285)
188 1g5t_A COB(I)alamin adenosyltr 46.6 20 0.00067 32.3 4.5 52 167-218 107-164 (196)
189 3ro3_B Minsc, peptide of prote 45.4 13 0.00044 19.9 1.8 13 6-18 8-20 (22)
190 3syl_A Protein CBBX; photosynt 43.6 62 0.0021 30.7 8.1 59 180-238 131-217 (309)
191 1sxj_D Activator 1 41 kDa subu 40.8 89 0.003 30.2 8.9 135 91-238 35-205 (353)
192 2qz4_A Paraplegin; AAA+, SPG7, 37.7 2E+02 0.0068 26.1 10.5 137 91-238 4-190 (262)
193 3pvs_A Replication-associated 37.6 1.1E+02 0.0039 31.1 9.3 133 92-238 25-178 (447)
194 3pfi_A Holliday junction ATP-d 33.9 1.5E+02 0.005 28.5 9.2 134 92-238 28-197 (338)
195 2gkw_B Tumor necrosis factor r 30.7 32 0.0011 19.1 1.9 19 200-218 3-21 (26)
196 3uk6_A RUVB-like 2; hexameric 30.4 3.7E+02 0.013 25.8 12.3 57 181-238 191-272 (368)
197 1sxj_E Activator 1 40 kDa subu 26.5 60 0.002 31.6 4.8 61 178-238 133-206 (354)
198 3eie_A Vacuolar protein sortin 26.2 3.9E+02 0.013 25.3 10.7 138 91-239 16-198 (322)
199 1sxj_A Activator 1 95 kDa subu 23.5 2.8E+02 0.0095 28.7 9.5 59 178-238 147-222 (516)
200 1a5t_A Delta prime, HOLB; zinc 22.1 99 0.0034 30.0 5.4 61 178-238 107-180 (334)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=1.4e-29 Score=276.20 Aligned_cols=210 Identities=15% Similarity=0.160 Sum_probs=165.7
Q ss_pred cccchhhHHHHHHHHHcC-CCCceEEEEEE-----------------------eeCCceEEEEEE-e---CCHHHHHHHH
Q 007787 96 MSLQDDAMVELLDQLIEG-PLQLSVVAIID-----------------------SFILIVHAWVSF-D---TDPGTMLDNI 147 (589)
Q Consensus 96 vGr~~~~~~~i~~~L~~~-~~~~~vi~IvG-----------------------~F~~~~~~wv~v-~---~~~~~i~~~i 147 (589)
|||+++ +++|+++|..+ +..++||+||| +|+ .++||+| . +++.+++++|
T Consensus 131 ~GR~~~-~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYH-VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD--SIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHH-HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS--EEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHH-HHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC--cEEEEEECCCCCCCHHHHHHHH
Confidence 799999 99999999765 45689999999 599 9999999 3 4899999999
Q ss_pred HHHhCCCCc---cccccccCHHHHHHHHHHHcCCc-eEEEEEecCCChhhHHHHhhhcCCCCCCcEEEEecccCcE----
Q 007787 148 LKYVMPQSA---FREILYKDFEKRKTALHDYLKNK-RYLIVLYDVFTNDVWDYLGEALPDHQNGSRVLVILFDDEI---- 219 (589)
Q Consensus 148 l~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDDvw~~~~w~~l~~~l~~~~~gs~IivTTR~~~v---- 219 (589)
+.++..... .+..+..+.+.++..+++.|++| ||||||||||+.+.+ .+.. .+||+||||||++.|
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 999987531 11133456778899999999996 999999999998754 2211 169999999999666
Q ss_pred ------EecCCCChHHHHHhhccccCCCCC-C------------CCCCchhhhcccc---hhHh---hccc-hhhhhccC
Q 007787 220 ------FNLCILENEDMINLDSVPATPLRA-T------------YQERPLVCLYYGS---ESLA---ENMK-LTWLIRKR 273 (589)
Q Consensus 220 ------~~l~~L~~~~~~~Lf~~~a~~~~~-~------------c~glPlai~~~g~---~~~~---~~~~-~~~~~~~~ 273 (589)
|++++|++++||+||.++||+... . |+|+|||++++|+ ..-| +.+. ..+.....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~ 361 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLV 361 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSS
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHH
Confidence 899999999999999999998764 2 9999999999998 1111 2200 12222222
Q ss_pred C---Cc-eecCCCCcchhhHhh-----------hccccCCCeeechhhHHHHHHhh--CCCc
Q 007787 274 S---PL-FSIAQLPQRLKLCCL-----------YLSACREGFEISTRQLNQLWIAE--GFIP 318 (589)
Q Consensus 274 ~---~l-lsy~~L~~~lk~cfl-----------~~~~fp~~~~~~~~~L~~l~~~~--~~i~ 318 (589)
. .+ +||++||.++|.||+ |||+||+++.+. +.+|+++ ||+.
T Consensus 362 ~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~ 419 (549)
T 2a5y_B 362 GVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDIC 419 (549)
T ss_dssp TTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC---
T ss_pred HHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceec
Confidence 2 22 999999999999999 999999999888 8999999 8886
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.7e-25 Score=226.82 Aligned_cols=215 Identities=24% Similarity=0.271 Sum_probs=192.6
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec----C
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR----T 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~----~ 398 (589)
+.|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++|.+..+|..+.++++|++|+++ .
T Consensus 84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred eEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc
Confidence 679999999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred cccCCccccc---------CCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCC
Q 007787 399 ITLPAHPGKF---------CTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPP 468 (589)
Q Consensus 399 ~~lp~~i~~~---------l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~ 468 (589)
..+|..+. . +++|++|++.++... ..+.. ++ .+++|++|++++|. +. .+|. +..++
T Consensus 164 ~~~p~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~----~l~~L~~L~L~~N~-----l~--~l~~~l~~l~ 229 (328)
T 4fcg_A 164 TELPEPLA-STDASGEHQGLVNLQSLRLEWTGIR-SLPAS-IA----NLQNLKSLKIRNSP-----LS--ALGPAIHHLP 229 (328)
T ss_dssp CCCCSCSE-EEC-CCCEEESTTCCEEEEEEECCC-CCCGG-GG----GCTTCCEEEEESSC-----CC--CCCGGGGGCT
T ss_pred cccChhHh-hccchhhhccCCCCCEEECcCCCcC-cchHh-hc----CCCCCCEEEccCCC-----CC--cCchhhccCC
Confidence 56777665 4 999999998877654 66677 77 78999999999974 33 6777 88999
Q ss_pred CccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCcc
Q 007787 469 SLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPE 548 (589)
Q Consensus 469 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~ 548 (589)
+|+.|+|++|.+.+..|..++.+++|++|+|++|.+.+. +|..++.+++|++|+|++|++.+.+|.
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--------------~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT--------------LPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB--------------CCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh--------------cchhhhcCCCCCEEeCCCCCchhhccH
Confidence 999999999999999999999999999999998887554 366788999999999999999999999
Q ss_pred ccccCCCCCEEEEeCCc
Q 007787 549 DLWRVKSLTKLELWWPR 565 (589)
Q Consensus 549 ~l~~l~~L~~L~l~~~~ 565 (589)
.+.++++|+.+++..+.
T Consensus 296 ~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHL 312 (328)
T ss_dssp GGGGSCTTCEEECCGGG
T ss_pred HHhhccCceEEeCCHHH
Confidence 99999999999987643
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.90 E-value=2.7e-24 Score=239.06 Aligned_cols=210 Identities=16% Similarity=0.150 Sum_probs=160.0
Q ss_pred CccccchhhHHHHHHHHHcCCCCceEEEEEE---------------------eeCCce-EEEEEE--eCCHHHHHHHHHH
Q 007787 94 NMMSLQDDAMVELLDQLIEGPLQLSVVAIID---------------------SFILIV-HAWVSF--DTDPGTMLDNILK 149 (589)
Q Consensus 94 ~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG---------------------~F~~~~-~~wv~v--~~~~~~i~~~il~ 149 (589)
..|||+.+ .++|.++|...+ ..+||+|+| +|+ . ++||+| .++...++..|++
T Consensus 129 ~~VGRe~e-LeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd--~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 129 YNVSRLQP-YLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp SCCCCHHH-HHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHS--SCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCCcHHH-HHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCC--CcEEEEEeCCCCCHHHHHHHHHH
Confidence 45999999 999999998643 489999999 788 6 999999 7788888888877
Q ss_pred HhCC---CCccc-c---ccccCHHHHHHHHHHHc---CCceEEEEEecCCChhhHHHHhhhcCCCCCCcEEEEecccCcE
Q 007787 150 YVMP---QSAFR-E---ILYKDFEKRKTALHDYL---KNKRYLIVLYDVFTNDVWDYLGEALPDHQNGSRVLVILFDDEI 219 (589)
Q Consensus 150 ~l~~---~~~~~-~---~~~~~~~~~~~~l~~~L---~~kr~LlVLDDvw~~~~w~~l~~~l~~~~~gs~IivTTR~~~v 219 (589)
.+.. ..... . ....+.+.+...+++.| .+||+||||||||+.+.|+.+. .||+||||||++.+
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHH
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHH
Confidence 5432 11000 0 01123455677777766 7899999999999999998752 69999999999886
Q ss_pred ---------EecC------CCChHHHHHhhccccCCCCCC-----CCCCchhhhcccc--hhHhhccchhhhhccCCCc-
Q 007787 220 ---------FNLC------ILENEDMINLDSVPATPLRAT-----YQERPLVCLYYGS--ESLAENMKLTWLIRKRSPL- 276 (589)
Q Consensus 220 ---------~~l~------~L~~~~~~~Lf~~~a~~~~~~-----c~glPlai~~~g~--~~~~~~~~~~~~~~~~~~l- 276 (589)
|.++ +|+++|||+||+++....... |+|+|||++++|+ ..-..+. ..|.......+
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~-eeW~~~~~~~I~ 356 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLT 356 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSH-HHHHHCSCHHHH
T ss_pred HHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCH-HHHhcCChhHHH
Confidence 6787 999999999999984332222 9999999999998 1110010 22332222222
Q ss_pred ----eecCCCCcch-hhHhhhccccCCCeeechhhHHHHHHhhC
Q 007787 277 ----FSIAQLPQRL-KLCCLYLSACREGFEISTRQLNQLWIAEG 315 (589)
Q Consensus 277 ----lsy~~L~~~l-k~cfl~~~~fp~~~~~~~~~L~~l~~~~~ 315 (589)
+||+.||.+. |.||+|||+||+++.+....++.+|.++|
T Consensus 357 aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence 9999999999 99999999999999999999999999875
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=1.6e-23 Score=250.60 Aligned_cols=217 Identities=21% Similarity=0.216 Sum_probs=166.7
Q ss_pred CCCCCCccccchhhHHHHHHHHHcCCCCceEEEEEE----------------------eeCCceEEEEEE-eC---CHHH
Q 007787 89 HLQRDNMMSLQDDAMVELLDQLIEGPLQLSVVAIID----------------------SFILIVHAWVSF-DT---DPGT 142 (589)
Q Consensus 89 ~~~~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG----------------------~F~~~~~~wv~v-~~---~~~~ 142 (589)
+.....+|||+++ .++|.++|...+..+++|+|+| +|.+ .+.||++ .. +...
T Consensus 120 p~~~~~~vgR~~~-~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 120 PQRPVIFVTRKKL-VHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSG-GVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCCCSSCCCCHHH-HHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTT-CEEEEECCSCCHHHHHH
T ss_pred CCCCceeccHHHH-HHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCC-eEEEEEECCcCchHHHH
Confidence 3455679999999 9999999987767899999999 3653 6779999 32 3445
Q ss_pred HHHHHHHHhCCCCccccccccCHHHHHHHHHHHcCCc--eEEEEEecCCChhhHHHHhhhcCCCCCCcEEEEecccCcE-
Q 007787 143 MLDNILKYVMPQSAFREILYKDFEKRKTALHDYLKNK--RYLIVLYDVFTNDVWDYLGEALPDHQNGSRVLVILFDDEI- 219 (589)
Q Consensus 143 i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDDvw~~~~w~~l~~~l~~~~~gs~IivTTR~~~v- 219 (589)
.++.++..+............+.+.+...++..+.+| |+||||||||+...|+.+ .+||+||||||++.|
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 5777888877644222223467788999999999987 999999999999877654 579999999999965
Q ss_pred ---------EecCC-CChHHHHHhhccccCCCCCC-----------CCCCchhhhcccc--h-------hHhhccc--hh
Q 007787 220 ---------FNLCI-LENEDMINLDSVPATPLRAT-----------YQERPLVCLYYGS--E-------SLAENMK--LT 267 (589)
Q Consensus 220 ---------~~l~~-L~~~~~~~Lf~~~a~~~~~~-----------c~glPlai~~~g~--~-------~~~~~~~--~~ 267 (589)
+.+.. |++++||+||...++..... |+|+||||+++|+ + ...+.+. ..
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQF 350 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCC
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhh
Confidence 88885 99999999999988654432 9999999999998 1 1111100 10
Q ss_pred hhhccC--C---Cc-----eecCCCCcchhhHhhhccccCCCeeechhhHHHHHHhh
Q 007787 268 WLIRKR--S---PL-----FSIAQLPQRLKLCCLYLSACREGFEISTRQLNQLWIAE 314 (589)
Q Consensus 268 ~~~~~~--~---~l-----lsy~~L~~~lk~cfl~~~~fp~~~~~~~~~L~~l~~~~ 314 (589)
..+... . .+ +||+.||.+.|.||+||++||+++.+....++.+|.++
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC
Confidence 111110 0 11 99999999999999999999999999999999999643
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.6e-22 Score=206.29 Aligned_cols=201 Identities=22% Similarity=0.239 Sum_probs=176.7
Q ss_pred CCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---CcccCCcccccCCCCccccc
Q 007787 341 LLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TITLPAHPGKFCTSLENLNF 417 (589)
Q Consensus 341 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~lp~~i~~~l~~L~~L~l 417 (589)
...++++|+|++|.++.+|..++++++|++|++++|.+..+|..++++++|++|+++ ...+|..++ .+++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA-SLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG-GCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh-cCcCCCEEEC
Confidence 358899999999999999999999999999999999999999999999999999999 457888999 9999999999
Q ss_pred ccccCCCCchhhhhcCcc-----cCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeecCCCCCCCCcccc
Q 007787 418 ISVLHPSSCTRDILGRLP-----SEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTELRDDPMPKPKKL 491 (589)
Q Consensus 418 ~~~~~~~~~~~~~l~~L~-----~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l 491 (589)
.+|+..+..+.. +.... ..+++|++|++++|. +. .+|. +..+++|++|+|++|.+.+ .|+.++.+
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~-----l~--~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l 228 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTG-----IR--SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEEC-----CC--CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCC-----cC--cchHhhcCCCCCCEEEccCCCCCc-CchhhccC
Confidence 888877777766 54100 148999999999974 33 6787 8899999999999999975 55679999
Q ss_pred cccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 492 LHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 492 ~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
++|++|++++|.+.+.. |..++.+++|++|+|++|.+.+.+|..+..+++|++|++++|+
T Consensus 229 ~~L~~L~Ls~n~~~~~~--------------p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNY--------------PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TTCCEEECTTCTTCCBC--------------CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCCEEECcCCcchhhh--------------HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 99999999998886543 5678889999999999999999999999999999999999987
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=6.7e-23 Score=207.66 Aligned_cols=227 Identities=19% Similarity=0.214 Sum_probs=153.6
Q ss_pred cEEEEcCCCCc---cCCcccCCCCCCCEEEeec-CCcc-ccchhhcCCCCccEEEecCCccc-cccccccccccCceeee
Q 007787 323 KLLNLGTIVLE---EYPAGINLLLLLKYLKLNI-PYLK-HLPASLCNLLNLYTIDMPSSYVR-CTPDSIGKMHELRHLNF 396 (589)
Q Consensus 323 r~L~L~~n~l~---~~p~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l 396 (589)
+.|+|++|.++ .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|++
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 66999999987 5888999999999999995 8777 78888999999999999999886 77888999999999999
Q ss_pred c----CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCC-CCCeEEEeeCCCCCCCCceecCCC-CCCCCCc
Q 007787 397 R----TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFE-LLESLKLVNELKIPSQLSSIVLPE-YQFPPSL 470 (589)
Q Consensus 397 ~----~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~-~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L 470 (589)
+ ...+|..+. .+++|++|++.++...+..+.. ++ .++ +|+.|++++|. +.. .+|. +..++ |
T Consensus 133 s~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~-l~----~l~~~L~~L~L~~N~-----l~~-~~~~~~~~l~-L 199 (313)
T 1ogq_A 133 SYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDS-YG----SFSKLFTSMTISRNR-----LTG-KIPPTFANLN-L 199 (313)
T ss_dssp CSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGG-GG----CCCTTCCEEECCSSE-----EEE-ECCGGGGGCC-C
T ss_pred CCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHH-Hh----hhhhcCcEEECcCCe-----eec-cCChHHhCCc-c
Confidence 8 336777888 8999999998777766667777 77 566 89999998853 110 2344 44444 6
Q ss_pred cEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC-----------CccccCcccccccceeeEee
Q 007787 471 IELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL-----------KEWIVEFEAIPKLESLIINP 539 (589)
Q Consensus 471 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L-----------~~l~~~~~~l~~L~~L~L~~ 539 (589)
+.|++++|.+.+..+..++.+++|+.|++++|.+.+.... ...+++| ..+|..++.+++|+.|++++
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 6666666666656666666666666666666665433200 0111111 01233444555555555555
Q ss_pred cCCCCCCccccccCCCCCEEEEeCCc
Q 007787 540 CAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 540 n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
|.+.+.+|.. ..+++|+.+++++||
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CcccccCCCC-ccccccChHHhcCCC
Confidence 5554444442 445555555555544
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.1e-22 Score=231.14 Aligned_cols=246 Identities=19% Similarity=0.194 Sum_probs=173.3
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCcc-ccchhhcCCCCccEEEecCCccc-cccccccccccCceeeec--
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLK-HLPASLCNLLNLYTIDMPSSYVR-CTPDSIGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~-- 397 (589)
+.|++++|.++ .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+.++++|++|+++
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 56777777776 66777777777777777777776 66777777777777777777664 567777777777777777
Q ss_pred --CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC---CCCCCC----------------
Q 007787 398 --TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL---KIPSQL---------------- 456 (589)
Q Consensus 398 --~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~---~lp~~L---------------- 456 (589)
...+|..++ .+++|++|++.++...+..+.. ++ .+++|+.|++++|. .+|+.+
T Consensus 501 ~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~-l~----~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 501 RLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAE-LG----DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp CCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGG-GG----GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred ccCCcCChHHh-cCCCCCEEECCCCcccCcCCHH-Hc----CCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 335666677 7777777777766666666666 66 67788888888742 344210
Q ss_pred -------------------------------------------cee--cCCC-CCCCCCccEEEEEeecCCCCCCCCccc
Q 007787 457 -------------------------------------------SSI--VLPE-YQFPPSLIELSLANTELRDDPMPKPKK 490 (589)
Q Consensus 457 -------------------------------------------~~L--~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~ 490 (589)
..+ .+|. ++.+++|+.|+|++|.+++.+|..+++
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 001 3455 677889999999999999999999999
Q ss_pred ccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCcHH---
Q 007787 491 LLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPRFE--- 567 (589)
Q Consensus 491 l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~~~--- 567 (589)
+++|+.|+|++|.++|.. |..++.+++|+.|+|++|.+.+.+|..+..+++|++|++++|+..
T Consensus 655 l~~L~~L~Ls~N~l~g~i--------------p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSI--------------PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp CTTCCEEECCSSCCCSCC--------------CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred cccCCEEeCcCCccCCCC--------------ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 999999999999998765 667888888889999888888888888888888888888887410
Q ss_pred -----H------------------HHHHhhccCCceeeeecccC
Q 007787 568 -----L------------------RERLRKFENRELFLWNVIRM 588 (589)
Q Consensus 568 -----~------------------~~~~~~~~g~~~~~~~~i~~ 588 (589)
+ ...|....+++|.++.|+..
T Consensus 721 P~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~ 764 (768)
T 3rgz_A 721 PEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHH 764 (768)
T ss_dssp CSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC------------
T ss_pred CCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccc
Confidence 0 01456677777777777654
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2.1e-22 Score=203.34 Aligned_cols=218 Identities=20% Similarity=0.199 Sum_probs=183.7
Q ss_pred cEEEEcCCCCccCCcc-cCCCCCCCEEEeecCCcccc---chhhcCCCCccEEEecCCccccccccccccccCceeeec-
Q 007787 323 KLLNLGTIVLEEYPAG-INLLLLLKYLKLNIPYLKHL---PASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~-~~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~- 397 (589)
+.|++++|.++.+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110 (306)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT
T ss_pred CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCC
Confidence 6799999999988765 68999999999999999855 677888999999999999999999999999999999998
Q ss_pred --CcccC--CcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccE
Q 007787 398 --TITLP--AHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIE 472 (589)
Q Consensus 398 --~~~lp--~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~ 472 (589)
...++ ..+. .+++|++|++.++...+..+.. +. .+++|++|++++|. +..-.+|. +..+++|++
T Consensus 111 n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-~~----~l~~L~~L~l~~n~-----l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 111 SNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGI-FN----GLSSLEVLKMAGNS-----FQENFLPDIFTELRNLTF 179 (306)
T ss_dssp SEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTT-TT----TCTTCCEEECTTCE-----EGGGEECSCCTTCTTCCE
T ss_pred Ccccccccchhhh-hccCCCEEECCCCcCCccchhh-cc----cCcCCCEEECCCCc-----cccccchhHHhhCcCCCE
Confidence 23344 3577 8999999998777665455555 65 78899999999853 11002566 889999999
Q ss_pred EEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCcccccc
Q 007787 473 LSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWR 552 (589)
Q Consensus 473 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~ 552 (589)
|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..|..+..
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD--------------TFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC--------------SGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC--------------hhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 999999998888889999999999999999986543 234677899999999999998888888888
Q ss_pred CC-CCCEEEEeCCc
Q 007787 553 VK-SLTKLELWWPR 565 (589)
Q Consensus 553 l~-~L~~L~l~~~~ 565 (589)
++ +|+.|++++|+
T Consensus 246 ~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 246 FPSSLAFLNLTQND 259 (306)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhccCCEEEccCCC
Confidence 85 99999999987
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=5.4e-23 Score=208.38 Aligned_cols=203 Identities=17% Similarity=0.221 Sum_probs=141.9
Q ss_pred cEEEEcC-CCCc-cCCcccCCCCCCCEEEeecCCcc-ccchhhcCCCCccEEEecCCccc-cccccccccccCceeeec-
Q 007787 323 KLLNLGT-IVLE-EYPAGINLLLLLKYLKLNIPYLK-HLPASLCNLLNLYTIDMPSSYVR-CTPDSIGKMHELRHLNFR- 397 (589)
Q Consensus 323 r~L~L~~-n~l~-~~p~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~- 397 (589)
++|++++ |.+. .+|..|+++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|+++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 6677774 6666 67777777777777777777776 67777777777777777777665 567777777777777777
Q ss_pred ---CcccCCcccccCC-CCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC---CCC------CCCcee-----
Q 007787 398 ---TITLPAHPGKFCT-SLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL---KIP------SQLSSI----- 459 (589)
Q Consensus 398 ---~~~lp~~i~~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~---~lp------~~L~~L----- 459 (589)
...+|..++ .++ +|++|++.++...+..+.. ++ .++ |+.|++++|. ..| ++|+.|
T Consensus 159 N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~-~~----~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 159 NRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPT-FA----NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp SCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGG-GG----GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred CcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChH-Hh----CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 225666677 666 7777776666555455555 55 343 7777776643 111 134433
Q ss_pred ---cCCC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCccccccccee
Q 007787 460 ---VLPE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESL 535 (589)
Q Consensus 460 ---~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L 535 (589)
..+. +..+++|++|+|++|.+++..|..++.+++|++|++++|.+.+.. |.. +.+++|+.|
T Consensus 232 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i--------------p~~-~~l~~L~~l 296 (313)
T 1ogq_A 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--------------PQG-GNLQRFDVS 296 (313)
T ss_dssp EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC--------------CCS-TTGGGSCGG
T ss_pred ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC--------------CCC-ccccccChH
Confidence 2233 667788888888888887778888888888888888888876543 333 789999999
Q ss_pred eEeecCCCCCCc
Q 007787 536 IINPCAHLKRLP 547 (589)
Q Consensus 536 ~L~~n~~l~~lp 547 (589)
++++|+.+...|
T Consensus 297 ~l~~N~~lc~~p 308 (313)
T 1ogq_A 297 AYANNKCLCGSP 308 (313)
T ss_dssp GTCSSSEEESTT
T ss_pred HhcCCCCccCCC
Confidence 999999554434
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=9.8e-22 Score=209.61 Aligned_cols=217 Identities=16% Similarity=0.149 Sum_probs=183.1
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCcccccccc-ccccccCceeeec--
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~-- 397 (589)
+.|+|++|.++ ..|..|.++++|++|+|++|.++.++ ..+.++++|++|+|++|.+..+|.. +.++++|++|+++
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 78999999999 55778999999999999999999765 6788999999999999999988765 8889999999999
Q ss_pred -CcccCC-cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEE
Q 007787 398 -TITLPA-HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSL 475 (589)
Q Consensus 398 -~~~lp~-~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L 475 (589)
...+|. .+. .+++|+.|++.+++..+..+...+. .+++|+.|++++|. +. .+|.+..+++|+.|+|
T Consensus 158 ~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~----~l~~L~~L~L~~n~-----l~--~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 158 PIESIPSYAFN-RVPSLMRLDLGELKKLEYISEGAFE----GLFNLKYLNLGMCN-----IK--DMPNLTPLVGLEELEM 225 (452)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTT----TCTTCCEEECTTSC-----CS--SCCCCTTCTTCCEEEC
T ss_pred CcceeCHhHHh-cCCcccEEeCCCCCCccccChhhcc----CCCCCCEEECCCCc-----cc--ccccccccccccEEEC
Confidence 344554 466 8999999998886664444443255 78999999999974 33 5555788999999999
Q ss_pred EeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCC
Q 007787 476 ANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKS 555 (589)
Q Consensus 476 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~ 555 (589)
++|.+.+..+..++++++|+.|++++|.+.+.. +..+..+++|+.|+|++|.+.+..+..+..+++
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE--------------RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC--------------TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceEC--------------HHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 999998888999999999999999999886543 345678999999999999987655566789999
Q ss_pred CCEEEEeCCc
Q 007787 556 LTKLELWWPR 565 (589)
Q Consensus 556 L~~L~l~~~~ 565 (589)
|+.|++++||
T Consensus 292 L~~L~L~~Np 301 (452)
T 3zyi_A 292 LVELHLHHNP 301 (452)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCC
Confidence 9999999987
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=207.91 Aligned_cols=217 Identities=18% Similarity=0.183 Sum_probs=183.3
Q ss_pred cEEEEcCCCCcc-CCcccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCccccccc-cccccccCceeeec--
Q 007787 323 KLLNLGTIVLEE-YPAGINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~-~p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~-- 397 (589)
+.|+|++|.++. .+..|.++++|++|+|++|.++.++ ..+.++++|++|+|++|.+..+|. .+..+++|++|+++
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 789999999994 4578999999999999999999766 578899999999999999999976 58999999999999
Q ss_pred -CcccCC-cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEE
Q 007787 398 -TITLPA-HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSL 475 (589)
Q Consensus 398 -~~~lp~-~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L 475 (589)
...+|. .+. .+++|++|++.+++..+..+...+. .+++|+.|++++|. ++ .+|.+..+++|+.|+|
T Consensus 147 ~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~----~l~~L~~L~L~~n~-----l~--~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 147 PIESIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFE----GLSNLRYLNLAMCN-----LR--EIPNLTPLIKLDELDL 214 (440)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTT----TCSSCCEEECTTSC-----CS--SCCCCTTCSSCCEEEC
T ss_pred cccccCHHHhh-hCcccCEeCCCCCCCcceeCcchhh----cccccCeecCCCCc-----Cc--cccccCCCcccCEEEC
Confidence 334444 466 8999999998886664444443255 78999999999974 33 5666788999999999
Q ss_pred EeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCC
Q 007787 476 ANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKS 555 (589)
Q Consensus 476 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~ 555 (589)
++|.+++..+..|.++++|+.|++++|.+.+.. +..+..+++|+.|+|++|.+....+..+..+++
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE--------------RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--------------TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEC--------------hhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 999998888999999999999999999886543 345678999999999999987655666889999
Q ss_pred CCEEEEeCCc
Q 007787 556 LTKLELWWPR 565 (589)
Q Consensus 556 L~~L~l~~~~ 565 (589)
|+.|++++||
T Consensus 281 L~~L~L~~Np 290 (440)
T 3zyj_A 281 LERIHLHHNP 290 (440)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 9999999987
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=6.4e-21 Score=190.36 Aligned_cols=214 Identities=19% Similarity=0.145 Sum_probs=176.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCccccc-cccccccccCceeeecCc-
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFRTI- 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~- 399 (589)
+.++.+++.++.+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|.+..+ |..+.++++|++|+++..
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56888888898888755 4789999999999997764 678899999999999988777 677899999999999832
Q ss_pred ---cc-CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEE
Q 007787 400 ---TL-PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIEL 473 (589)
Q Consensus 400 ---~l-p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L 473 (589)
.+ |..+. .+++|++|++.++...+..+.. +. .+++|++|++++|. +. .+|. +..+++|+.|
T Consensus 92 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-~~----~l~~L~~L~l~~n~-----l~--~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 92 QLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGL-FR----GLAALQYLYLQDNA-----LQ--ALPDDTFRDLGNLTHL 158 (285)
T ss_dssp TCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTT-TT----TCTTCCEEECCSSC-----CC--CCCTTTTTTCTTCCEE
T ss_pred CccccCHHHhc-CCcCCCEEECCCCcCCEECHhH-hh----CCcCCCEEECCCCc-----cc--ccCHhHhccCCCccEE
Confidence 23 55677 8999999998877765555555 66 78899999999874 23 4554 7889999999
Q ss_pred EEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccC
Q 007787 474 SLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRV 553 (589)
Q Consensus 474 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l 553 (589)
++++|.+++.++..++.+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+..+..+..+
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--------------PHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------TTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccC--------------HhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 99999998777778999999999999999886543 4567789999999999999876555668999
Q ss_pred CCCCEEEEeCCc
Q 007787 554 KSLTKLELWWPR 565 (589)
Q Consensus 554 ~~L~~L~l~~~~ 565 (589)
++|+.|++++||
T Consensus 225 ~~L~~L~l~~N~ 236 (285)
T 1ozn_A 225 RALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEeccCCC
Confidence 999999999987
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=204.81 Aligned_cols=236 Identities=20% Similarity=0.166 Sum_probs=157.4
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCccccchh-hcCCCCccEEEecCCccccc-cccccccccCceeeecC-
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLKHLPAS-LCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFRT- 398 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~- 398 (589)
+.|+|++|.++ ..|..|+++++|++|+|++|.++.+|.. +.++++|++|++++|.+..+ |..+.++++|++|+++.
T Consensus 59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 56777777777 3466777777777777777777766653 46677777777777766555 44577777777777762
Q ss_pred ---cccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCC-------CCCcee-------
Q 007787 399 ---ITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIP-------SQLSSI------- 459 (589)
Q Consensus 399 ---~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp-------~~L~~L------- 459 (589)
...|..+. .+++|++|++.++...+..... +. .+++|+.|+++++. .++ ++|+.|
T Consensus 139 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-l~----~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 139 DLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEA-LS----HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp TCCEECTTSST-TCTTCCEEEEESCCCSSCCHHH-HT----TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ccceeChhhcc-CCCCCCEEECCCCcCcccChhH-hc----ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 22244566 7777777776666554434444 55 56677777777643 111 144444
Q ss_pred --cCCC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCcc-----------ccC
Q 007787 460 --VLPE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEW-----------IVE 525 (589)
Q Consensus 460 --~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l-----------~~~ 525 (589)
.+|. .....+|++|+|++|.++..++..++.+++|+.|+|++|.+.+.. ......+++|+.+ |..
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-TTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-hhhccccccCCEEECCCCccceECHHH
Confidence 3333 333447888888888876555556778888888888888775432 1112344555222 556
Q ss_pred cccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 526 FEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 526 ~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+..+++|+.|+|++|.+.+..+..|..+++|++|++++||
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 7889999999999999876555667899999999999987
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=8.2e-21 Score=209.64 Aligned_cols=236 Identities=19% Similarity=0.162 Sum_probs=173.5
Q ss_pred cEEEEcCCCCccC-CcccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcccccccc-ccccccCceeeec--
Q 007787 323 KLLNLGTIVLEEY-PAGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~-- 397 (589)
++|+|++|.++.+ |..|+.+++|++|+|++|.++.+|+ .++++++|++|+|++|.+..+|.. ++++++|++|+++
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence 7788888888844 4588888899999998888887665 457888899999998888888776 4788889998888
Q ss_pred --CcccCCcccccCCCCcccccccccCCCCchhhhhcCcc------------cCCCCCCeEEEeeCC------CCCCCCc
Q 007787 398 --TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLP------------SEFELLESLKLVNEL------KIPSQLS 457 (589)
Q Consensus 398 --~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~------------~~l~~L~~L~l~~~~------~lp~~L~ 457 (589)
....|..+. .+++|++|++.++...+..+.. +..|. ....+|+.|++++|. ..+++|+
T Consensus 158 ~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~-l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~ 235 (597)
T 3oja_B 158 NLERIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSL-IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235 (597)
T ss_dssp CCCBCCTTTTT-TCTTCCEEECTTSCCSBCCGGG-CTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred cCCCCChhhhh-cCCcCcEEECcCCCCCCcChhh-hhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence 223344577 8888888887776654332222 22111 123445555555543 2233566
Q ss_pred ee-----cC--CC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC----------
Q 007787 458 SI-----VL--PE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL---------- 519 (589)
Q Consensus 458 ~L-----~l--p~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L---------- 519 (589)
.| .+ +. +..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+. +.....+|+|
T Consensus 236 ~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCCC
Confidence 65 12 23 67788999999999999888888899999999999999988763 3334556777
Q ss_pred CccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 520 KEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 520 ~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
..+|..++.+++|+.|+|++|.+.+ +| +..+++|+.|++++||
T Consensus 314 ~~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 314 LHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred CccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCC
Confidence 4567778889999999999999854 44 6778999999999998
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.3e-20 Score=196.97 Aligned_cols=236 Identities=19% Similarity=0.170 Sum_probs=165.5
Q ss_pred cEEEEcCCCCccCC-cccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCcccccccc-ccccccCceeeec--
Q 007787 323 KLLNLGTIVLEEYP-AGINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p-~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~-- 397 (589)
|+|++++|.++.++ ..|+.+++|++|++++|.++.+| ..++++++|++|++++|.+..+|.. +.++++|++|+++
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 67888888888444 47888888888888888888664 4467888888888888888888776 4778888888887
Q ss_pred -Cccc-CCcccccCCCCcccccccccCCCCchhhhhcCcc------------cCCCCCCeEEEeeCC------CCCCCCc
Q 007787 398 -TITL-PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLP------------SEFELLESLKLVNEL------KIPSQLS 457 (589)
Q Consensus 398 -~~~l-p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~------------~~l~~L~~L~l~~~~------~lp~~L~ 457 (589)
...+ |..+. .+++|++|++.++...+..+.. +..+. ...++|+.|+++++. ..+++|+
T Consensus 152 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~ 229 (390)
T 3o6n_A 152 NLERIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSL-IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 229 (390)
T ss_dssp CCCBCCTTTTS-SCTTCCEEECCSSCCSBCCGGG-CTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCC
T ss_pred ccCccChhhcc-CCCCCCEEECCCCcCCcccccc-ccccceeecccccccccCCCCcceEEECCCCeeeecccccccccc
Confidence 2233 34466 7888888887766553332222 22111 122345555555432 1123455
Q ss_pred ee-----cCC--C-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC----------
Q 007787 458 SI-----VLP--E-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL---------- 519 (589)
Q Consensus 458 ~L-----~lp--~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L---------- 519 (589)
.| .+. . +..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+.. .....+++|
T Consensus 230 ~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 230 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE--CSSSCCTTCCEEECCSSCC
T ss_pred EEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC--cccCCCCCCCEEECCCCcc
Confidence 55 121 2 667889999999999988777888899999999999988886532 233456666
Q ss_pred CccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 520 KEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 520 ~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
..+|..++.+++|+.|++++|++.. +| +..+++|+.|++++||
T Consensus 308 ~~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 308 LHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred eecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCC
Confidence 4566677889999999999998754 44 6778999999999998
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=4.7e-21 Score=217.76 Aligned_cols=231 Identities=19% Similarity=0.209 Sum_probs=151.0
Q ss_pred cEEEEcCCCCc-cCCcccCC--CCCCCEEEeecCCcc-ccchhhcCCCCccEEEecCCccc-cccccccccccCceeeec
Q 007787 323 KLLNLGTIVLE-EYPAGINL--LLLLKYLKLNIPYLK-HLPASLCNLLNLYTIDMPSSYVR-CTPDSIGKMHELRHLNFR 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~--l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~ 397 (589)
+.|++++|.++ .+|..++. +++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|+.|+++
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence 44555555555 44444444 555666666666555 55556666666666666666553 445556666666666665
Q ss_pred ----CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccE
Q 007787 398 ----TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIE 472 (589)
Q Consensus 398 ----~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~ 472 (589)
...+|..+. .+++|++|++.++...+..+.. ++ .+++|+.|++++|.. .. .+|. ++.+++|+.
T Consensus 451 ~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~-l~----~l~~L~~L~L~~N~l-----~~-~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 451 LNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSG-LS----NCTNLNWISLSNNRL-----TG-EIPKWIGRLENLAI 518 (768)
T ss_dssp SSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGG-GG----GCTTCCEEECCSSCC-----CS-CCCGGGGGCTTCCE
T ss_pred CCcccCcCCHHHc-CCCCceEEEecCCcccCcCCHH-Hh----cCCCCCEEEccCCcc-----CC-cCChHHhcCCCCCE
Confidence 234555555 6666666665555555555555 55 556666666665421 00 4555 777888888
Q ss_pred EEEEeecCCCCCCCCcccccccceeEEecCcccCceeeE-----------------------------------------
Q 007787 473 LSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLIC----------------------------------------- 511 (589)
Q Consensus 473 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~----------------------------------------- 511 (589)
|+|++|.+.+.+|..++.+++|+.|++++|.+.|.....
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 888888887788888888888888888888766432110
Q ss_pred ----------------------------ecCCCCCC-----------CccccCcccccccceeeEeecCCCCCCcccccc
Q 007787 512 ----------------------------RFGCFPSL-----------KEWIVEFEAIPKLESLIINPCAHLKRLPEDLWR 552 (589)
Q Consensus 512 ----------------------------~~~~f~~L-----------~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~ 552 (589)
....+++| ..+|..++.+++|+.|+|++|.+.+.+|..++.
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 00112222 356788889999999999999999999999999
Q ss_pred CCCCCEEEEeCCc
Q 007787 553 VKSLTKLELWWPR 565 (589)
Q Consensus 553 l~~L~~L~l~~~~ 565 (589)
+++|+.|++++|.
T Consensus 679 L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 679 LRGLNILDLSSNK 691 (768)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc
Confidence 9999999999986
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=7e-21 Score=203.05 Aligned_cols=240 Identities=19% Similarity=0.144 Sum_probs=161.2
Q ss_pred cEEEEcCCCCc-cC-CcccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCcccc-cccc--ccccccCceeee
Q 007787 323 KLLNLGTIVLE-EY-PAGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRC-TPDS--IGKMHELRHLNF 396 (589)
Q Consensus 323 r~L~L~~n~l~-~~-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-lp~~--~~~L~~L~~L~l 396 (589)
|.|++++|.+. .+ |..|.++++|++|+|++|.+..+ |..++++++|++|++++|.+.. +|.. +.++++|++|++
T Consensus 57 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 136 (455)
T 3v47_A 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136 (455)
T ss_dssp CEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEEC
T ss_pred cEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEEC
Confidence 66777777765 33 45677777777777777777744 5667777777777777776654 3433 777777888777
Q ss_pred cC---cc-cCCc-ccccCCCCcccccccccCCCCchhhhhcCcc------------------------------cCCCCC
Q 007787 397 RT---IT-LPAH-PGKFCTSLENLNFISVLHPSSCTRDILGRLP------------------------------SEFELL 441 (589)
Q Consensus 397 ~~---~~-lp~~-i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~------------------------------~~l~~L 441 (589)
+. .. .|.. +. .+++|++|++.++...+..+.. +..+. ..+++|
T Consensus 137 ~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 214 (455)
T 3v47_A 137 RDNNIKKIQPASFFL-NMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214 (455)
T ss_dssp CSSBCCSCCCCGGGG-GCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred CCCccCccCcccccC-CCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhcccccccccccccee
Confidence 72 22 2443 56 7788888887666554433333 33210 022456
Q ss_pred CeEEEeeCCCC------------------------------------------------CCCCcee---------cCCC-
Q 007787 442 ESLKLVNELKI------------------------------------------------PSQLSSI---------VLPE- 463 (589)
Q Consensus 442 ~~L~l~~~~~l------------------------------------------------p~~L~~L---------~lp~- 463 (589)
+.|++++|... +++|+.| ..|.
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 66666654210 0234444 2345
Q ss_pred CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCC----------cc-ccCccccccc
Q 007787 464 YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLK----------EW-IVEFEAIPKL 532 (589)
Q Consensus 464 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~----------~l-~~~~~~l~~L 532 (589)
+..+++|+.|+|++|.+.+..+..++.+++|++|++++|.+.+.. +.....+++|+ .+ |..++.+++|
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-hhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 778888999999888888777888888889999999888875432 22335566662 22 5567889999
Q ss_pred ceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 533 ESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 533 ~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
++|++++|.+.+..+..+..+++|++|++++||
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 999999999876445567899999999999876
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=7.6e-21 Score=193.99 Aligned_cols=221 Identities=13% Similarity=0.139 Sum_probs=165.5
Q ss_pred cEEEEcCCCCccCCc-ccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCccccccccccccccCceeeecC--
Q 007787 323 KLLNLGTIVLEEYPA-GINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRT-- 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~-- 398 (589)
++|++++|.++.++. .|+++++|++|++++|.++.+ |..++++++|++|++++|.+..+|..+. ++|++|+++.
T Consensus 55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~ 132 (330)
T 1xku_A 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE 132 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC
T ss_pred eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc
Confidence 679999999996654 789999999999999999866 7788999999999999999999988765 7899999982
Q ss_pred -cccCC-cccccCCCCcccccccccCC--CCchhhhhcCcccCCCCCCeEEEeeCC--CCC----CCCcee--------c
Q 007787 399 -ITLPA-HPGKFCTSLENLNFISVLHP--SSCTRDILGRLPSEFELLESLKLVNEL--KIP----SQLSSI--------V 460 (589)
Q Consensus 399 -~~lp~-~i~~~l~~L~~L~l~~~~~~--~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp----~~L~~L--------~ 460 (589)
..++. .+. .+++|++|++.++... +..+.. +. .+++|+.|+++++. .+| ++|+.| .
T Consensus 133 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~-~~----~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 133 ITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGA-FQ----GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 206 (330)
T ss_dssp CCBBCHHHHT-TCTTCCEEECCSSCCCGGGBCTTG-GG----GCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE
T ss_pred ccccCHhHhc-CCccccEEECCCCcCCccCcChhh-cc----CCCCcCEEECCCCccccCCccccccCCEEECCCCcCCc
Confidence 33333 366 8999999997776652 234445 65 68899999998865 222 355555 2
Q ss_pred C-CC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEe
Q 007787 461 L-PE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIIN 538 (589)
Q Consensus 461 l-p~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~ 538 (589)
+ |. +..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+. .+|..+..+++|++|+++
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---------------~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---------------KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---------------SCCTTTTTCSSCCEEECC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc---------------cCChhhccCCCcCEEECC
Confidence 2 33 667777777777777776666666777777777777777664 245567788999999999
Q ss_pred ecCCCCCCccccc------cCCCCCEEEEeCCcH
Q 007787 539 PCAHLKRLPEDLW------RVKSLTKLELWWPRF 566 (589)
Q Consensus 539 ~n~~l~~lp~~l~------~l~~L~~L~l~~~~~ 566 (589)
+|++.+..+..|. ..++|+.|++++||.
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 9988654444443 247889999999983
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=200.07 Aligned_cols=236 Identities=18% Similarity=0.162 Sum_probs=173.9
Q ss_pred cEEEEcCCCCccC-CcccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCcccccccc-ccccccCceeeecC-
Q 007787 323 KLLNLGTIVLEEY-PAGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFRT- 398 (589)
Q Consensus 323 r~L~L~~n~l~~~-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~- 398 (589)
|.|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.+..+|.. +.++++|++|+++.
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 7899999999954 67899999999999999999966 77899999999999999999999875 78999999999992
Q ss_pred ---cccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCC-------CCCcee-------
Q 007787 399 ---ITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIP-------SQLSSI------- 459 (589)
Q Consensus 399 ---~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp-------~~L~~L------- 459 (589)
...|..+. .+++|++|++.++...+..+.. +. .+++|+.|++++|. .+| ++|+.|
T Consensus 115 ~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-~~----~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 115 KIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRA-FS----GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CCCEECTTTTT-TCTTCCEEEECCTTCCEECTTS-ST----TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ccccCChhHcc-ccccCCEEECCCCccceeChhh-cc----CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 23455677 9999999998877665555555 76 78999999999975 222 244444
Q ss_pred -cCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCc----------cc-cC
Q 007787 460 -VLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKE----------WI-VE 525 (589)
Q Consensus 460 -~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~----------l~-~~ 525 (589)
.++. +..+++|+.|++++|...+..+.......+|+.|++++|.+.+.. ......+++|+. ++ ..
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HHHhcCccccCeeECCCCcCCccChhh
Confidence 2222 556666666666666655554444444456777777666665332 111234555522 22 24
Q ss_pred cccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 526 FEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 526 ~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 6678888888888888877667778888999999998875
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=1.2e-20 Score=209.78 Aligned_cols=234 Identities=19% Similarity=0.230 Sum_probs=163.9
Q ss_pred cEEEEcCCCCccCCc--ccCCCCCCCEEEeecCCcc-ccchhhcCCCCccEEEecCCcccccccccccccc-Cceeeec-
Q 007787 323 KLLNLGTIVLEEYPA--GINLLLLLKYLKLNIPYLK-HLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHE-LRHLNFR- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~--~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~-L~~L~l~- 397 (589)
+.|++++|.++.+|. .++++++|++|++++|.+. .+| .++.+++|++|++++|.+..+|..+.++++ |++|+++
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 679999999988888 8999999999999999998 888 888899999999999988888888999988 9999998
Q ss_pred --CcccCCcccccCC--CCcccccccccCCCCchhhhhcCcc---cCCCCCCeEEEeeCC--CCCC-------CCcee--
Q 007787 398 --TITLPAHPGKFCT--SLENLNFISVLHPSSCTRDILGRLP---SEFELLESLKLVNEL--KIPS-------QLSSI-- 459 (589)
Q Consensus 398 --~~~lp~~i~~~l~--~L~~L~l~~~~~~~~~~~~~l~~L~---~~l~~L~~L~l~~~~--~lp~-------~L~~L-- 459 (589)
...+|..+. .++ +|++|++.++...+..+.. +.... -.+++|+.|++++|. .+|+ +|+.|
T Consensus 387 N~l~~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 387 NKLKYIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SCCSSCCSCCC-TTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred CcCcccchhhh-hcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence 446777666 544 7888887777665554444 43000 023456666666543 2331 33433
Q ss_pred ------cCCC--CCCC-------CCccEEEEEeecCCCCCCCCcc--cccccceeEEecCcccCceeeEecCCCCCC---
Q 007787 460 ------VLPE--YQFP-------PSLIELSLANTELRDDPMPKPK--KLLHLQVLKLKKNSFIGRKLICRFGCFPSL--- 519 (589)
Q Consensus 460 ------~lp~--~~~l-------~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L--- 519 (589)
.+|. +... ++|+.|+|++|.++ .+|..+. .+++|+.|+|++|.+.+. +.....+++|
T Consensus 465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L 541 (636)
T 4eco_A 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKF--PTQPLNSSTLKGF 541 (636)
T ss_dssp CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSC--CCGGGGCSSCCEE
T ss_pred CCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCc--ChhhhcCCCCCEE
Confidence 3443 2211 26777777777765 4455554 667777777777766552 2222233333
Q ss_pred --------------CccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 520 --------------KEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 520 --------------~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
..+|..++.+++|+.|+|++|.+ +.+|..+. ++|+.|++++|+
T Consensus 542 ~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp ECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred ECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 34566788899999999999998 77887665 899999999996
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=3.3e-20 Score=189.41 Aligned_cols=219 Identities=15% Similarity=0.121 Sum_probs=154.5
Q ss_pred cEEEEcCCCCccC-CcccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCccccccccccccccCceeeec---
Q 007787 323 KLLNLGTIVLEEY-PAGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~--- 397 (589)
+.|++++|.++.+ |..|+++++|++|++++|.++.+ |..++++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~ 134 (332)
T 2ft3_A 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR 134 (332)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC
T ss_pred eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc
Confidence 6789999988855 55788899999999999888865 6678888999999999998888887765 788888888
Q ss_pred CcccCCc-ccccCCCCcccccccccCC--CCchhhhhcCcccCCCCCCeEEEeeCC--CCC----CCCcee--------c
Q 007787 398 TITLPAH-PGKFCTSLENLNFISVLHP--SSCTRDILGRLPSEFELLESLKLVNEL--KIP----SQLSSI--------V 460 (589)
Q Consensus 398 ~~~lp~~-i~~~l~~L~~L~l~~~~~~--~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp----~~L~~L--------~ 460 (589)
...+|.. +. .+++|++|++.++... +..+.. +. .+ +|+.|+++++. .+| ++|+.| .
T Consensus 135 i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~-~~----~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 135 IRKVPKGVFS-GLRNMNCIEMGGNPLENSGFEPGA-FD----GL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA 207 (332)
T ss_dssp CCCCCSGGGS-SCSSCCEEECCSCCCBGGGSCTTS-SC----SC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCC
T ss_pred cCccCHhHhC-CCccCCEEECCCCccccCCCCccc-cc----CC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCc
Confidence 3344543 66 7888888887766552 233333 44 34 77777777753 222 244444 3
Q ss_pred CC-C-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEe
Q 007787 461 LP-E-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIIN 538 (589)
Q Consensus 461 lp-~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~ 538 (589)
++ . +..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+. .+|..++.+++|+.|+++
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---------------~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS---------------RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC---------------BCCTTGGGCTTCCEEECC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe---------------ecChhhhcCccCCEEECC
Confidence 33 3 667777888888888777666667777778888888777664 235566778888888888
Q ss_pred ecCCCCCCcccccc------CCCCCEEEEeCCc
Q 007787 539 PCAHLKRLPEDLWR------VKSLTKLELWWPR 565 (589)
Q Consensus 539 ~n~~l~~lp~~l~~------l~~L~~L~l~~~~ 565 (589)
+|++....+..+.. .++|+.|++++||
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCCCCccChhHccccccccccccccceEeecCc
Confidence 88775443333432 3667888888877
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=8.1e-21 Score=211.05 Aligned_cols=239 Identities=15% Similarity=0.142 Sum_probs=152.4
Q ss_pred cEEEEcCCCCcc------------------CCcccC--CCCCCCEEEeecCCcc-ccchhhcCCCCccEEEecCCc-cc-
Q 007787 323 KLLNLGTIVLEE------------------YPAGIN--LLLLLKYLKLNIPYLK-HLPASLCNLLNLYTIDMPSSY-VR- 379 (589)
Q Consensus 323 r~L~L~~n~l~~------------------~p~~~~--~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~-l~- 379 (589)
|+|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..++++++|++|++++|. +.
T Consensus 209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 678888888885 888888 8888888888888765 778888888888888888886 75
Q ss_pred -ccccccccc------ccCceeeec---CcccCC--cccccCCCCcccccccccCCCCchhhhhcCcc------------
Q 007787 380 -CTPDSIGKM------HELRHLNFR---TITLPA--HPGKFCTSLENLNFISVLHPSSCTRDILGRLP------------ 435 (589)
Q Consensus 380 -~lp~~~~~L------~~L~~L~l~---~~~lp~--~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~------------ 435 (589)
.+|..++++ ++|++|+++ ...+|. .++ .+++|++|++.++...+..+ . ++.++
T Consensus 289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQI 365 (636)
T ss_dssp HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT-TCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEE
T ss_pred ccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc-cCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCcc
Confidence 478777776 788888887 346777 677 78888888876666544444 4 44211
Q ss_pred -------cCCCC-CCeEEEeeCC--CCCC--------CCcee---------cCCC-CC-------CCCCccEEEEEeecC
Q 007787 436 -------SEFEL-LESLKLVNEL--KIPS--------QLSSI---------VLPE-YQ-------FPPSLIELSLANTEL 480 (589)
Q Consensus 436 -------~~l~~-L~~L~l~~~~--~lp~--------~L~~L---------~lp~-~~-------~l~~L~~L~L~~n~l 480 (589)
..+++ |+.|++++|. .+|. +|+.| .+|. +. .+++|+.|+|++|.+
T Consensus 366 ~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp EECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred ccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence 13444 5566665543 2221 23333 2223 33 445666666666666
Q ss_pred CCCCCCCcccccccceeEEecCcccCceeeEe------cCCCCCC----------CccccCcc--cccccceeeEeecCC
Q 007787 481 RDDPMPKPKKLLHLQVLKLKKNSFIGRKLICR------FGCFPSL----------KEWIVEFE--AIPKLESLIINPCAH 542 (589)
Q Consensus 481 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~------~~~f~~L----------~~l~~~~~--~l~~L~~L~L~~n~~ 542 (589)
...++..+..+++|++|++++|.+........ ...+++| ..+|..+. .+++|+.|+|++|.+
T Consensus 446 ~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC
Confidence 53333334456677777776666652210000 0001133 45566665 788888888888887
Q ss_pred CCCCccccccCCCCCEEEEeCCc
Q 007787 543 LKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 543 l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
.+ +|..+..+++|+.|++++|.
T Consensus 526 ~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 526 SK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp SS-CCCGGGGCSSCCEEECCSCB
T ss_pred CC-cChhhhcCCCCCEEECCCCc
Confidence 65 77778888888888886543
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=194.09 Aligned_cols=230 Identities=17% Similarity=0.102 Sum_probs=179.3
Q ss_pred cEEEEcCCCCccCCc-ccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCcccccccc-ccccccCceeeec--
Q 007787 323 KLLNLGTIVLEEYPA-GINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~-- 397 (589)
+.|++++|.++.+|. .+.++++|++|++++|.++.++ ..++++++|++|++++|.+..+|.. +.++++|++|+++
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 789999999996665 8999999999999999999764 5689999999999999999999877 8899999999998
Q ss_pred -CcccCC--cccccCCCCcccccccccCCCC-chhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccE
Q 007787 398 -TITLPA--HPGKFCTSLENLNFISVLHPSS-CTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIE 472 (589)
Q Consensus 398 -~~~lp~--~i~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~ 472 (589)
...+|. .+. .+++|++|++.+++.... .+.. ++ .+++|+.|++++|. +.. ..|. +..+++|++
T Consensus 135 ~l~~l~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~-~~----~l~~L~~L~l~~n~-----l~~-~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 135 PYKTLGETSLFS-HLTKLQILRVGNMDTFTKIQRKD-FA----GLTFLEELEIDASD-----LQS-YEPKSLKSIQNVSH 202 (353)
T ss_dssp CCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTT-TT----TCCEEEEEEEEETT-----CCE-ECTTTTTTCSEEEE
T ss_pred CCcccCchhhhc-cCCCCcEEECCCCccccccCHHH-cc----CCCCCCEEECCCCC-----cCc-cCHHHHhccccCCe
Confidence 445665 577 899999999887754333 3445 65 78899999999874 221 2355 888999999
Q ss_pred EEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEe--cCCCCCC---------------CccccCccccccccee
Q 007787 473 LSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICR--FGCFPSL---------------KEWIVEFEAIPKLESL 535 (589)
Q Consensus 473 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~f~~L---------------~~l~~~~~~l~~L~~L 535 (589)
|++++|.+...+...++.+++|+.|++++|.+.+..+... ....+.+ ..+|..++.+++|+.|
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 9999999854444445678999999999998876432110 0111111 2356667889999999
Q ss_pred eEeecCCCCCCccc-cccCCCCCEEEEeCCc
Q 007787 536 IINPCAHLKRLPED-LWRVKSLTKLELWWPR 565 (589)
Q Consensus 536 ~L~~n~~l~~lp~~-l~~l~~L~~L~l~~~~ 565 (589)
++++|.+. .+|.. +..+++|++|++++||
T Consensus 283 ~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 99999886 67766 5899999999999987
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=2.7e-20 Score=194.50 Aligned_cols=233 Identities=15% Similarity=0.127 Sum_probs=180.4
Q ss_pred cEEEEcCCCCccCCcc-cCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCccccccc-cccccccCceeeec--
Q 007787 323 KLLNLGTIVLEEYPAG-INLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~-~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~-- 397 (589)
|+|++++|.++.+|.. +..+++|++|++++|.++.+|. .++.+++|++|++++|.+..+|. .+.++++|++|+++
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 7899999999988875 6789999999999999997765 78999999999999999988854 58999999999999
Q ss_pred -CcccCCcc-cccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCC--CC----CC--------------
Q 007787 398 -TITLPAHP-GKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELK--IP----SQ-------------- 455 (589)
Q Consensus 398 -~~~lp~~i-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~--lp----~~-------------- 455 (589)
...+|..+ . .+++|++|++.++...+..+.. ++ .+++|+.|++++|.. ++ ++
T Consensus 128 ~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~----~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 128 DLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDT-FQ----ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTT-TS----SCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred ccCcCCHHHhc-CCCCCcEEECCCCccCccChhh-cc----CCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence 45677664 6 8999999998887765555555 66 677888888887541 11 13
Q ss_pred -----Cceec-----CCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC----
Q 007787 456 -----LSSIV-----LPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL---- 519 (589)
Q Consensus 456 -----L~~L~-----lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L---- 519 (589)
|+.|. +.. ...+++|+.|++++|.+.+. +.++.+++|+.|++++|.+.+.. +.....+++|
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLY 278 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEE
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC-hhHccccccCCEEE
Confidence 33331 111 12346788899999988653 57889999999999999886543 2233456666
Q ss_pred ------CccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 520 ------KEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 520 ------~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
..+|...+.+++|+.|++++|.+. .+|..+..+++|++|++++|+
T Consensus 279 L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence 445666677899999999999875 677778889999999999987
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=5.1e-20 Score=203.73 Aligned_cols=236 Identities=19% Similarity=0.142 Sum_probs=123.3
Q ss_pred cEEEEcCCCCccCCc-ccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccc-cccccccccCceeeecC--
Q 007787 323 KLLNLGTIVLEEYPA-GINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFRT-- 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~-- 398 (589)
+.|++++|.++.++. .|+.+++|++|++++|.++.+|..++++++|++|++++|.+..+ |..+.++++|++|+++.
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 456666666663333 35666666666666666666666666666666666666655544 34566666666666651
Q ss_pred --cccCCc-ccccCCCCcccccccccCCCCc--hhhhhcCcccCCCCCCeEEEeeCC---CCC------CCCcee-----
Q 007787 399 --ITLPAH-PGKFCTSLENLNFISVLHPSSC--TRDILGRLPSEFELLESLKLVNEL---KIP------SQLSSI----- 459 (589)
Q Consensus 399 --~~lp~~-i~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~~l~~L~~L~l~~~~---~lp------~~L~~L----- 459 (589)
..+|.. +. .+++|++|++.++...+.. +.. ++ .+++|++|++++|. ..| ++|+.|
T Consensus 337 ~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~-~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 337 KRLELGTGCLE-NLENLRELDLSHDDIETSDCCNLQ-LR----NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp SCCBCCSSTTT-TCTTCCEEECCSSCCCEEEESTTT-TT----TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred cccccchhhhh-ccCcCCEEECCCCccccccCcchh-cc----cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 133333 44 5666666665554442222 223 33 44555555555532 111 133333
Q ss_pred ----cCC-C-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceee-----------------------
Q 007787 460 ----VLP-E-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLI----------------------- 510 (589)
Q Consensus 460 ----~lp-~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~----------------------- 510 (589)
..| . +..+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+.
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 111 2 45556666666666665555555555566666666655555442211
Q ss_pred ---EecCCCCCC-----------CccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 511 ---CRFGCFPSL-----------KEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 511 ---~~~~~f~~L-----------~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
.....+++| ...|..+..+++| .|++++|.+.+..|..+..+++|+.|++++||
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 111222333 1123344455555 55666665555445555666777777777765
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=7.5e-20 Score=186.78 Aligned_cols=217 Identities=17% Similarity=0.224 Sum_probs=175.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCccccc-cccccccccCceeeec---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~--- 397 (589)
|.++++++.++.+|..+. ++|++|++++|.++.+| ..+.++++|++|++++|.+..+ |..+.++++|++|+++
T Consensus 36 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred CEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 789999999999998775 79999999999999775 4789999999999999999887 7789999999999999
Q ss_pred CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCC----C-CC-----CCcee--------
Q 007787 398 TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELK----I-PS-----QLSSI-------- 459 (589)
Q Consensus 398 ~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~----l-p~-----~L~~L-------- 459 (589)
...+|..+. ++|++|++.++......+.. ++ .+++|+.|++++|.. . |. +|+.|
T Consensus 114 l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~-~~----~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 114 LVEIPPNLP---SSLVELRIHDNRIRKVPKGV-FS----GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185 (332)
T ss_dssp CCSCCSSCC---TTCCEEECCSSCCCCCCSGG-GS----SCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS
T ss_pred CCccCcccc---ccCCEEECCCCccCccCHhH-hC----CCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC
Confidence 445666543 79999998777665444444 65 789999999998652 2 21 34444
Q ss_pred cCCCCCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEee
Q 007787 460 VLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINP 539 (589)
Q Consensus 460 ~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~ 539 (589)
.+|. ...++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..++.+++|+.|++++
T Consensus 186 ~l~~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 186 GIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE--------------NGSLSFLPTLRELHLDN 250 (332)
T ss_dssp SCCS-SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC--------------TTGGGGCTTCCEEECCS
T ss_pred ccCc-cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC--------------hhHhhCCCCCCEEECCC
Confidence 3343 11268888888888888777788888889999999888876543 33577899999999999
Q ss_pred cCCCCCCccccccCCCCCEEEEeCCc
Q 007787 540 CAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 540 n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
|.+. .+|..+..+++|+.|++++|+
T Consensus 251 N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 251 NKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp SCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred CcCe-ecChhhhcCccCCEEECCCCC
Confidence 9875 788889999999999999987
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1e-19 Score=186.79 Aligned_cols=226 Identities=18% Similarity=0.173 Sum_probs=113.1
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecC---c
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRT---I 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~---~ 399 (589)
|.|++++|.++.+|. +..+++|++|++++|.++.+| .+.++++|++|++++|.+..+|. +..+++|++|+++. .
T Consensus 69 ~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~ 145 (347)
T 4fmz_A 69 EYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNL 145 (347)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTC
T ss_pred cEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCc
Confidence 556666666665554 666666666666666666554 35666666666666666665554 55666666666651 1
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCC-----CCCcee-----cCCC---C
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIP-----SQLSSI-----VLPE---Y 464 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp-----~~L~~L-----~lp~---~ 464 (589)
..+..+. .+++|++|++.++..... .. +. .+++|+.|+++++. .++ ++|+.| .+.. +
T Consensus 146 ~~~~~~~-~l~~L~~L~l~~~~~~~~--~~-~~----~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 217 (347)
T 4fmz_A 146 SDLSPLS-NMTGLNYLTVTESKVKDV--TP-IA----NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPV 217 (347)
T ss_dssp CCCGGGT-TCTTCCEEECCSSCCCCC--GG-GG----GCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred ccccchh-hCCCCcEEEecCCCcCCc--hh-hc----cCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchh
Confidence 1222344 555566665544433111 11 22 44555555555533 111 133333 1111 3
Q ss_pred CCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC----------CccccCcccccccce
Q 007787 465 QFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL----------KEWIVEFEAIPKLES 534 (589)
Q Consensus 465 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L----------~~l~~~~~~l~~L~~ 534 (589)
..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+.+.. ....+++| ..++ .+..+++|+.
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~ 291 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN---AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNS 291 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSE
T ss_pred hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh---hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCE
Confidence 345555555555555543322 555555555555555544321 12233333 1111 2344555555
Q ss_pred eeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 535 LIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 535 L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
|++++|.+.+..|..+..+++|++|++++|+
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 5555555544444445555555555555554
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=5.9e-20 Score=208.53 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=66.7
Q ss_pred cEEEEcCCCCcc------------------CCcccC--CCCCCCEEEeecCCcc-ccchhhcCCCCccEEEecCCc-cc-
Q 007787 323 KLLNLGTIVLEE------------------YPAGIN--LLLLLKYLKLNIPYLK-HLPASLCNLLNLYTIDMPSSY-VR- 379 (589)
Q Consensus 323 r~L~L~~n~l~~------------------~p~~~~--~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~-l~- 379 (589)
+.|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..++++++|++|+|++|. +.
T Consensus 451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence 667777777775 777766 7777777777777654 677777777777777777775 65
Q ss_pred -cccccccccc-------cCceeeec---CcccCC--cccccCCCCcccccccccC
Q 007787 380 -CTPDSIGKMH-------ELRHLNFR---TITLPA--HPGKFCTSLENLNFISVLH 422 (589)
Q Consensus 380 -~lp~~~~~L~-------~L~~L~l~---~~~lp~--~i~~~l~~L~~L~l~~~~~ 422 (589)
.+|..+++++ +|++|+++ ...+|. .++ .+++|++|++.++..
T Consensus 531 ~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~-~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ-KMVKLGLLDCVHNKV 585 (876)
T ss_dssp HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT-TCTTCCEEECTTSCC
T ss_pred ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh-cCCCCCEEECCCCCc
Confidence 3666665555 67777776 335665 566 666666666555544
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=5.8e-20 Score=208.60 Aligned_cols=232 Identities=18% Similarity=0.215 Sum_probs=139.5
Q ss_pred cEEEEcCCCCccCCc--ccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCcccccccccccccc-Cceeeec--
Q 007787 323 KLLNLGTIVLEEYPA--GINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHE-LRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~--~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~-L~~L~l~-- 397 (589)
+.|+|++|.++.+|. .++++++|++|+|++|.++.+| .++++++|+.|++++|.+..+|..+.++++ |++|+++
T Consensus 551 ~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred cEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence 456666666666666 6666666666666666666666 566666666666666666666666666666 6666666
Q ss_pred -CcccCCcccccCCC--CcccccccccCCCCch---hhhhcCcccCCCCCCeEEEeeCC--CCC-------CCCcee---
Q 007787 398 -TITLPAHPGKFCTS--LENLNFISVLHPSSCT---RDILGRLPSEFELLESLKLVNEL--KIP-------SQLSSI--- 459 (589)
Q Consensus 398 -~~~lp~~i~~~l~~--L~~L~l~~~~~~~~~~---~~~l~~L~~~l~~L~~L~l~~~~--~lp-------~~L~~L--- 459 (589)
...+|..+. .++. |+.|++.++...+..+ .. ++.+ .+++|+.|++++|. .+| ++|+.|
T Consensus 630 ~L~~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~-l~~~--~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 630 KLKYIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCS-MDDY--KGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705 (876)
T ss_dssp CCCSCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSC-TTTC--CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECC
T ss_pred CCCcCchhhh-ccccCCCCEEECcCCcCCCccccchhh-hccc--cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECC
Confidence 234555444 4332 6666655554433221 11 1110 23356666666654 233 244444
Q ss_pred -----cCCC--CC-------CCCCccEEEEEeecCCCCCCCCcc--cccccceeEEecCcccCceeeEecCCCCCC----
Q 007787 460 -----VLPE--YQ-------FPPSLIELSLANTELRDDPMPKPK--KLLHLQVLKLKKNSFIGRKLICRFGCFPSL---- 519 (589)
Q Consensus 460 -----~lp~--~~-------~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L---- 519 (589)
.+|. +. ++++|+.|+|++|.++ .+|..+. .+++|+.|+|++|.+.+. +.....+++|
T Consensus 706 ~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~l--p~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSF--PTQPLNSSQLKAFG 782 (876)
T ss_dssp SCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSC--CCGGGGCTTCCEEE
T ss_pred CCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCcc--chhhhcCCCCCEEE
Confidence 4454 22 1237888888888876 5566665 788888888888877662 3223344444
Q ss_pred -------------CccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 520 -------------KEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 520 -------------~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
..+|..++.+++|+.|+|++|.+ +.+|..+. ++|+.|+|++|+
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 23455666777778888877777 66776554 577888888776
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=6.1e-20 Score=202.63 Aligned_cols=232 Identities=16% Similarity=0.141 Sum_probs=182.9
Q ss_pred cEEEEcCCCCccCCcc-cCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcccccccc-ccccccCceeeec--
Q 007787 323 KLLNLGTIVLEEYPAG-INLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~-~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~-- 397 (589)
+++++++|.+..+|.. +..+++|++|+|++|.++.+|+ .++.+++|++|+|++|.+..+|.. ++++++|++|+++
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 7899999999977765 6789999999999999997765 889999999999999999888654 7999999999999
Q ss_pred -CcccCCc-ccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCC--------------------
Q 007787 398 -TITLPAH-PGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIP-------------------- 453 (589)
Q Consensus 398 -~~~lp~~-i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp-------------------- 453 (589)
...+|.. ++ .+++|++|++.++...+..+.. ++ .+++|+.|++++|. .+|
T Consensus 134 ~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~-~~----~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 134 DLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDT-FQ----ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTT-TT----TCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred CCCCCCHHHhc-cCCCCCEEEeeCCcCCCCChhh-hh----cCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence 4566766 47 8999999998888776666666 76 67788888888754 111
Q ss_pred ---CCCcee--------cCCCCCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC---
Q 007787 454 ---SQLSSI--------VLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL--- 519 (589)
Q Consensus 454 ---~~L~~L--------~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L--- 519 (589)
++|+.| .+|. ...++|+.|+|++|.+++ ++.++.+++|+.|+|++|.+.+.. +.....+++|
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 283 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERL 283 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEEC-SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEE
T ss_pred cCCchhheeeccCCccccccc-ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC-HHHhcCccCCCEE
Confidence 233333 1111 123578888898888865 467899999999999999987653 2334556666
Q ss_pred -------CccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 520 -------KEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 520 -------~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
..+|...+.+|+|+.|+|++|.+. .+|..+..+++|+.|++++|+
T Consensus 284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp ECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred ECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 455666778999999999999876 688888889999999999987
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=9e-20 Score=202.40 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=62.6
Q ss_pred cEEEEcCCCCccCC-cccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcccccccc-ccccccCceeeecC-
Q 007787 323 KLLNLGTIVLEEYP-AGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFRT- 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~- 398 (589)
|+|+|++|.++.+| .+|.+|++|++|+|++|+++.+|. .+.++++|++|++++|.+..+|.. |+++++|++|+++.
T Consensus 79 ~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 79 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC
Confidence 66777777776443 356677777777777777776664 356677777777777766666543 66677777777761
Q ss_pred ----cccCCcccccCCCCccccccccc
Q 007787 399 ----ITLPAHPGKFCTSLENLNFISVL 421 (589)
Q Consensus 399 ----~~lp~~i~~~l~~L~~L~l~~~~ 421 (589)
..+|..++ .+++|++|++.++.
T Consensus 159 ~l~~~~~~~~~~-~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 159 LIQSFKLPEYFS-NLTNLEHLDLSSNK 184 (635)
T ss_dssp CCCCCCCCGGGG-GCTTCCEEECCSSC
T ss_pred ccccCCCchhhc-cchhhhhhcccCcc
Confidence 23455555 66666666655443
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=8.2e-20 Score=202.07 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=57.4
Q ss_pred cEEEEcCCCCccC-CcccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCccc--cccccccccccCceeeec
Q 007787 323 KLLNLGTIVLEEY-PAGINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVR--CTPDSIGKMHELRHLNFR 397 (589)
Q Consensus 323 r~L~L~~n~l~~~-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~--~lp~~~~~L~~L~~L~l~ 397 (589)
|.|+|++|.++.+ |..|+++++|++|++++|.+..+| ..++++++|++|++++|.+. .+|..++++++|++|+++
T Consensus 83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 6788888887744 677788888888888888877665 56777888888888888765 467778888888888877
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=6.3e-19 Score=202.29 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=70.2
Q ss_pred cEEEEcCCCCc-cC-CcccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCcccc-cccc--ccccccCceeee
Q 007787 323 KLLNLGTIVLE-EY-PAGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRC-TPDS--IGKMHELRHLNF 396 (589)
Q Consensus 323 r~L~L~~n~l~-~~-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-lp~~--~~~L~~L~~L~l 396 (589)
|+|+|++|... .+ |..|+++++|++|+|++|.+..+ |..++++++|++|+|++|.+.. +|.. +.++++|++|++
T Consensus 51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130 (844)
T ss_dssp SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence 67777777533 44 66777777777777777777754 6677777778888887776654 4444 777778888877
Q ss_pred cCc---c--cCCcccccCCCCcccccccccCCCCchhh
Q 007787 397 RTI---T--LPAHPGKFCTSLENLNFISVLHPSSCTRD 429 (589)
Q Consensus 397 ~~~---~--lp~~i~~~l~~L~~L~l~~~~~~~~~~~~ 429 (589)
+.. . .+..++ .+++|++|++.++...+..+..
T Consensus 131 s~N~l~~~~~~~~~~-~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 131 SKNQIRSLYLHPSFG-KLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ESCCCCCCCCCGGGG-TCSSCCEEEEESSCCCCCCSGG
T ss_pred CCCcccccccchhHh-hCCCCCEEECCCCcCCeeCHHH
Confidence 721 1 223566 7778888877666554433333
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=9.8e-20 Score=201.46 Aligned_cols=218 Identities=17% Similarity=0.166 Sum_probs=129.1
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCccc-ccccc-ccccccCceeeecC-
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVR-CTPDS-IGKMHELRHLNFRT- 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~-~lp~~-~~~L~~L~~L~l~~- 398 (589)
+.|++++|.++.+|..++.+++|++|++++|.+..+ |..++++++|++|++++|.+. .+|.. +.++++|++|+++.
T Consensus 281 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp SEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred CEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 456666666666666666666666666666666543 334555555555555555432 33332 44555555555541
Q ss_pred -----------------------------cccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeC
Q 007787 399 -----------------------------ITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNE 449 (589)
Q Consensus 399 -----------------------------~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~ 449 (589)
...|..+. .+++|++|++.++...+..+...+. .+++|+.|++++|
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~l~~n 435 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQ----NLHLLKVLNLSHS 435 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTT----TCTTCCEEECTTC
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhh----CcccCCEEECCCC
Confidence 11223334 4445555544433332221111022 5667777777775
Q ss_pred C---CCC------CCCcee-----c-----CC--C-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCc
Q 007787 450 L---KIP------SQLSSI-----V-----LP--E-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGR 507 (589)
Q Consensus 450 ~---~lp------~~L~~L-----~-----lp--~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 507 (589)
. ..| ++|+.| . +| . +..+++|+.|++++|.+++..|..++.+++|+.|++++|.+.+.
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 3 112 255555 1 22 3 67788999999999998888888999999999999999988765
Q ss_pred eeeEecCCCCCC---------Cc-cccCcccccccceeeEeecCCCCCC
Q 007787 508 KLICRFGCFPSL---------KE-WIVEFEAIPKLESLIINPCAHLKRL 546 (589)
Q Consensus 508 ~~~~~~~~f~~L---------~~-l~~~~~~l~~L~~L~L~~n~~l~~l 546 (589)
. +.....+++| .. .|..++.+++|+.|++++|++....
T Consensus 516 ~-~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 516 S-IEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp G-GGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred C-hhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 4 2222334433 22 2445678999999999999986543
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=3.6e-20 Score=186.84 Aligned_cols=215 Identities=17% Similarity=0.125 Sum_probs=177.8
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchh-hcCCCCccEEEecCCccccc---cccccccccCceeeec-
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPAS-LCNLLNLYTIDMPSSYVRCT---PDSIGKMHELRHLNFR- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~l---p~~~~~L~~L~~L~l~- 397 (589)
+.++.+++.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 458889999999998665 7999999999999999876 58999999999999988655 6777889999999999
Q ss_pred --CcccCCcccccCCCCcccccccccCCCCch-hhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEE
Q 007787 398 --TITLPAHPGKFCTSLENLNFISVLHPSSCT-RDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIEL 473 (589)
Q Consensus 398 --~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L 473 (589)
...+|..+. .+++|++|++.++...+... .. +. .+++|+.|+++++. +.. ..|. +..+++|++|
T Consensus 88 n~i~~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~-~~----~l~~L~~L~l~~n~-----l~~-~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 88 NGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSV-FL----SLRNLIYLDISHTH-----TRV-AFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSEEEEEEEEE-TCTTCCEEECTTSEEESSTTTTT-TT----TCTTCCEEECTTSC-----CEE-CSTTTTTTCTTCCEE
T ss_pred CccccChhhcC-CCCCCCEEECCCCcccccccchh-hh----hccCCCEEECCCCc-----CCc-cchhhcccCcCCCEE
Confidence 446777788 99999999988776533322 34 55 78999999999863 221 2344 8889999999
Q ss_pred EEEeecCCC-CCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCcccccc
Q 007787 474 SLANTELRD-DPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWR 552 (589)
Q Consensus 474 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~ 552 (589)
++++|.+.+ ..|..++.+++|++|++++|.+.+.. |..+..+++|+.|++++|.+.+..+..+..
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--------------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--------------TTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC--------------HHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 999999876 57788999999999999999886543 446778999999999999987666667889
Q ss_pred CCCCCEEEEeCCc
Q 007787 553 VKSLTKLELWWPR 565 (589)
Q Consensus 553 l~~L~~L~l~~~~ 565 (589)
+++|+.|++++|+
T Consensus 222 l~~L~~L~L~~N~ 234 (306)
T 2z66_A 222 LNSLQVLDYSLNH 234 (306)
T ss_dssp CTTCCEEECTTSC
T ss_pred cccCCEeECCCCC
Confidence 9999999999997
No 36
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=1.6e-19 Score=179.19 Aligned_cols=213 Identities=19% Similarity=0.185 Sum_probs=151.0
Q ss_pred EEEcCCCCccCCcccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCccccccc-cccccccCceeeecC---c
Q 007787 325 LNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFRT---I 399 (589)
Q Consensus 325 L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~---~ 399 (589)
++..+..++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.+..++. .+.++++|++|+++. .
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4455555666776554 567788888887776655 66777788888888887766654 577777888888772 2
Q ss_pred cc-CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEe
Q 007787 400 TL-PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLAN 477 (589)
Q Consensus 400 ~l-p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~ 477 (589)
.+ |..+. .+++|++|++.++...+..... ++ .+++|++|++++|. +..+.+|. +..+++|+.|++++
T Consensus 90 ~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-~~----~l~~L~~L~l~~n~-----l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 90 SLALGAFS-GLSSLQKLVAVETNLASLENFP-IG----HLKTLKELNVAHNL-----IQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp EECTTTTT-TCTTCCEEECTTSCCCCSTTCC-CT----TCTTCCEEECCSSC-----CCCCCCCGGGGGCTTCCEEECCS
T ss_pred ccChhhhc-CCccccEEECCCCCccccCchh-cc----cCCCCCEEECcCCc-----cceecCchhhccCCCCCEEECCC
Confidence 22 34566 7788888887666554433334 54 67889999988863 22113566 88889999999999
Q ss_pred ecCCCCCCCCcccccccc----eeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccC
Q 007787 478 TELRDDPMPKPKKLLHLQ----VLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRV 553 (589)
Q Consensus 478 n~l~~~~~~~l~~l~~L~----~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l 553 (589)
|.+++..+..+..+++|+ .|++++|.+.+.. .......+|+.|++++|.+.+..+..+..+
T Consensus 159 N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~---------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ---------------PGAFKEIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC---------------TTSSCSCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred CCCCcCCHHHhhhhhhccccceeeecCCCcccccC---------------ccccCCCcccEEECCCCceeecCHhHhccc
Confidence 999877777888888887 7888888875432 233334589999999999765444456889
Q ss_pred CCCCEEEEeCCc
Q 007787 554 KSLTKLELWWPR 565 (589)
Q Consensus 554 ~~L~~L~l~~~~ 565 (589)
++|+.|++++||
T Consensus 224 ~~L~~L~l~~N~ 235 (276)
T 2z62_A 224 TSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEECCSSC
T ss_pred ccccEEEccCCc
Confidence 999999999654
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=1.8e-19 Score=197.57 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=94.4
Q ss_pred CCCCCCeEEEeeCC---CCC------CCCcee--------cCC---C-CCCCCCccEEEEEeecCCC-CCCCCccccccc
Q 007787 437 EFELLESLKLVNEL---KIP------SQLSSI--------VLP---E-YQFPPSLIELSLANTELRD-DPMPKPKKLLHL 494 (589)
Q Consensus 437 ~l~~L~~L~l~~~~---~lp------~~L~~L--------~lp---~-~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L 494 (589)
.+++|+.|++++|. ..| ++|+.| .+| . +..+++|+.|++++|.+.+ .+...+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 56789999999864 233 255555 333 3 6788899999999999877 444458888999
Q ss_pred ceeEEecCcccCceeeEecCCC-CCC----------CccccCcccccccceeeEeecCCCCCCccc-cccCCCCCEEEEe
Q 007787 495 QVLKLKKNSFIGRKLICRFGCF-PSL----------KEWIVEFEAIPKLESLIINPCAHLKRLPED-LWRVKSLTKLELW 562 (589)
Q Consensus 495 ~~L~L~~n~~~~~~~~~~~~~f-~~L----------~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~-l~~l~~L~~L~l~ 562 (589)
+.|++++|.+.+..+. .+ ++| +.+|..+..+++|+.|++++|.+. .+|.. +..+++|+.|+++
T Consensus 431 ~~L~l~~n~l~~~~~~----~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFR----CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CEEECCSSCCCGGGGS----SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CEEECCCCCCCcchhh----hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 9999998888654321 22 233 567888889999999999999986 67766 8899999999999
Q ss_pred CCc
Q 007787 563 WPR 565 (589)
Q Consensus 563 ~~~ 565 (589)
+||
T Consensus 506 ~N~ 508 (562)
T 3a79_B 506 DNP 508 (562)
T ss_dssp SCC
T ss_pred CCC
Confidence 987
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1.8e-19 Score=202.15 Aligned_cols=238 Identities=16% Similarity=0.087 Sum_probs=134.2
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcccccc-ccccccccCceeeec--
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTP-DSIGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~-- 397 (589)
|+|+|++|.++ ..|..++++++|++|+|++|.++.+|. .++++++|++|++++|.+..+| ..++++++|++|+++
T Consensus 52 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp SEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred cEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence 45566655555 334455555666666666655555554 3555566666666665555554 345555666666655
Q ss_pred --CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC---CCC-------------------
Q 007787 398 --TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL---KIP------------------- 453 (589)
Q Consensus 398 --~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~---~lp------------------- 453 (589)
....|..++ .+++|++|++.++...+..+.. ++.+ .+++|+.|++++|. ..|
T Consensus 132 ~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 132 GLSSTKLGTQV-QLENLQELLLSNNKIQALKSEE-LDIF--ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSCCCCCSSS-CCTTCCEEECCSSCCCCBCHHH-HGGG--TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred cccccCchhhc-ccccCCEEEccCCcccccCHHH-hhcc--ccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 122233344 5555555555444433333332 2210 23445555554432 111
Q ss_pred --------------CCCcee---------cCCC-CCCCC--CccEEEEEeecCCCCCCCCcccccccceeEEecCcccCc
Q 007787 454 --------------SQLSSI---------VLPE-YQFPP--SLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGR 507 (589)
Q Consensus 454 --------------~~L~~L---------~lp~-~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 507 (589)
++|+.| ..|. +..++ +|+.|++++|.+.+..+..++.+++|++|++++|.+.+.
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 122222 1122 44443 377777777777666666777777777777777766543
Q ss_pred eeeEecCCCCCCC----------------cccc----CcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 508 KLICRFGCFPSLK----------------EWIV----EFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 508 ~~~~~~~~f~~L~----------------~l~~----~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
. +....++++|+ .+|. .++.+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 288 ~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 288 F-SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp C-TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred C-hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 2 11223344442 2222 56678999999999999887777778899999999998874
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=2.8e-19 Score=178.36 Aligned_cols=196 Identities=19% Similarity=0.162 Sum_probs=163.7
Q ss_pred cEEEEcCCCCccCC-cccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCc-cccc-cccccccccCceeeec-
Q 007787 323 KLLNLGTIVLEEYP-AGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSY-VRCT-PDSIGKMHELRHLNFR- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~-l~~l-p~~~~~L~~L~~L~l~- 397 (589)
+.|++++|.++.+| ..|..+++|++|++++|.++.+ |..+.++++|++|++++|. +..+ |..+..+++|++|+++
T Consensus 35 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~ 114 (285)
T 1ozn_A 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114 (285)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred eEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC
Confidence 77999999999655 5799999999999999999976 6788999999999999996 8888 6779999999999998
Q ss_pred --Cccc-CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccE
Q 007787 398 --TITL-PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIE 472 (589)
Q Consensus 398 --~~~l-p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~ 472 (589)
...+ |..+. .+++|++|++.++......+.. ++ .+++|+.|++++|. +. .+|. +..+++|+.
T Consensus 115 n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-~~----~l~~L~~L~l~~n~-----l~--~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 115 CGLQELGPGLFR-GLAALQYLYLQDNALQALPDDT-FR----DLGNLTHLFLHGNR-----IS--SVPERAFRGLHSLDR 181 (285)
T ss_dssp SCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTT-TT----TCTTCCEEECCSSC-----CC--EECTTTTTTCTTCCE
T ss_pred CcCCEECHhHhh-CCcCCCEEECCCCcccccCHhH-hc----cCCCccEEECCCCc-----cc--ccCHHHhcCccccCE
Confidence 2233 55577 8999999998877765444445 65 78999999999874 33 4555 888999999
Q ss_pred EEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCC
Q 007787 473 LSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKR 545 (589)
Q Consensus 473 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~ 545 (589)
|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..+..+++|+.|++++|++...
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP--------------TEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--------------HHHHTTCTTCCEEECCSSCEECS
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCC--------------HHHcccCcccCEEeccCCCccCC
Confidence 999999998888899999999999999999886543 33467789999999999987643
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=1.5e-20 Score=190.22 Aligned_cols=213 Identities=17% Similarity=0.130 Sum_probs=167.4
Q ss_pred cEEEEcCCCCc--cCCcccC-------CCCCCCEEEeecCCcc-ccchhh--cCCCCccEEEecCCcccccccccccc--
Q 007787 323 KLLNLGTIVLE--EYPAGIN-------LLLLLKYLKLNIPYLK-HLPASL--CNLLNLYTIDMPSSYVRCTPDSIGKM-- 388 (589)
Q Consensus 323 r~L~L~~n~l~--~~p~~~~-------~l~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~l~~lp~~~~~L-- 388 (589)
+.|+|++|.+. .+|..+. ++++|++|+|++|.++ .+|..+ +.+++|++|++++|.+..+|..+..+
T Consensus 66 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~ 145 (312)
T 1wwl_A 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145 (312)
T ss_dssp HHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHT
T ss_pred hhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHH
Confidence 56888888885 6777666 7899999999999998 688876 88999999999999988888888877
Q ss_pred ---ccCceeeec---CcccC-CcccccCCCCcccccccccCCCC--chhhhh--cCcccCCCCCCeEEEeeCCCCCCCCc
Q 007787 389 ---HELRHLNFR---TITLP-AHPGKFCTSLENLNFISVLHPSS--CTRDIL--GRLPSEFELLESLKLVNELKIPSQLS 457 (589)
Q Consensus 389 ---~~L~~L~l~---~~~lp-~~i~~~l~~L~~L~l~~~~~~~~--~~~~~l--~~L~~~l~~L~~L~l~~~~~lp~~L~ 457 (589)
++|++|+++ ...++ ..++ .+++|++|++.++...+. .+.. + + .+++|++|++++|. +.
T Consensus 146 ~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~----~l~~L~~L~L~~N~-----l~ 214 (312)
T 1wwl_A 146 WLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISA-LCPL----KFPTLQVLALRNAG-----ME 214 (312)
T ss_dssp TCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHH-SCTT----SCTTCCEEECTTSC-----CC
T ss_pred hhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHH-HHhc----cCCCCCEEECCCCc-----Cc
Confidence 899999998 33333 6688 899999999877765332 2333 3 4 78899999999873 22
Q ss_pred ee-cCCC--CCCCCCccEEEEEeecCCCCCC-CCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccc
Q 007787 458 SI-VLPE--YQFPPSLIELSLANTELRDDPM-PKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLE 533 (589)
Q Consensus 458 ~L-~lp~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~ 533 (589)
.+ .++. +..+++|+.|+|++|.+.+..+ ..+..+++|++|++++|.++. +|..+. ++|+
T Consensus 215 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------ip~~~~--~~L~ 277 (312)
T 1wwl_A 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ---------------VPKGLP--AKLS 277 (312)
T ss_dssp CHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS---------------CCSSCC--SEEE
T ss_pred chHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh---------------hhhhcc--CCce
Confidence 11 1222 4577899999999999987664 567778999999999998852 233443 8999
Q ss_pred eeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 534 SLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 534 ~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+|++++|.+.+ +|. +..+++|++|++++|+
T Consensus 278 ~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 278 VLDLSYNRLDR-NPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEECCSSCCCS-CCC-TTTSCEEEEEECTTCT
T ss_pred EEECCCCCCCC-Chh-HhhCCCCCEEeccCCC
Confidence 99999999865 476 8899999999999997
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=5.7e-19 Score=188.94 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=44.6
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~ 397 (589)
|.|++++|.++.+|. ++++++|++|++++|.+..+|. ++++++|++|++++|.+..+|. +.++++|++|+++
T Consensus 71 ~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 71 TQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELS 142 (466)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEE
T ss_pred CEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECC
Confidence 556666666665554 6666666666666666665554 6666666666666666655544 5566666666665
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-18 Score=172.80 Aligned_cols=191 Identities=21% Similarity=0.244 Sum_probs=126.0
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcccccccc-ccccccCceeeecC--
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFRT-- 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~-- 398 (589)
+.++++++.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.+..+|.. +.++++|++|+++.
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 568999999988887665 689999999999987775 678899999999999988888765 46677777777762
Q ss_pred -cccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEE
Q 007787 399 -ITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSL 475 (589)
Q Consensus 399 -~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L 475 (589)
..+|.. . +. .+++|++|++++|. +. .+|. +..+++|++|+|
T Consensus 97 l~~~~~~------------------------~-~~----~l~~L~~L~l~~n~-----l~--~~~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 97 LQALPIG------------------------V-FD----QLVNLAELRLDRNQ-----LK--SLPPRVFDSLTKLTYLSL 140 (270)
T ss_dssp CCCCCTT------------------------T-TT----TCSSCCEEECCSSC-----CC--CCCTTTTTTCTTCCEEEC
T ss_pred CCcCCHh------------------------H-cc----cccCCCEEECCCCc-----cC--eeCHHHhCcCcCCCEEEC
Confidence 222221 1 22 34455555555432 11 3333 566667777777
Q ss_pred EeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCC
Q 007787 476 ANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKS 555 (589)
Q Consensus 476 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~ 555 (589)
++|.+.+.++..++.+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++
T Consensus 141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP--------------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CCCcCCccCHhHccCCcccceeEecCCcCcEeC--------------hhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 777766655555667777777777666664432 223455667777777777665433334666777
Q ss_pred CCEEEEeCCc
Q 007787 556 LTKLELWWPR 565 (589)
Q Consensus 556 L~~L~l~~~~ 565 (589)
|+.|++++||
T Consensus 207 L~~L~l~~N~ 216 (270)
T 2o6q_A 207 LKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEecCCC
Confidence 7777777665
No 43
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=197.62 Aligned_cols=214 Identities=20% Similarity=0.228 Sum_probs=156.9
Q ss_pred CCCCCccccchhhHHHHHHHHHcCCCCceEEEEEE----------------------eeCCceEEEEEE-eCCHHHHHHH
Q 007787 90 LQRDNMMSLQDDAMVELLDQLIEGPLQLSVVAIID----------------------SFILIVHAWVSF-DTDPGTMLDN 146 (589)
Q Consensus 90 ~~~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG----------------------~F~~~~~~wv~v-~~~~~~i~~~ 146 (589)
.....+|||+.+ .++|.++|.......++|+|+| +|.+ .++||++ ..+...+...
T Consensus 121 ~~~~~~vGR~~~-l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 121 QRPVVFVTRKKL-VNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG-GVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CCCSSCCCCHHH-HHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTT-CEEEEEEESCCHHHHHHH
T ss_pred CCCCeecccHHH-HHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCC-ceEEEECCCCchHHHHHH
Confidence 345679999999 9999999986555689999999 4632 7999999 5555555554
Q ss_pred H---HHHhCCCCccccccccCHHHHHHHHHHHcCC--ceEEEEEecCCChhhHHHHhhhcCCCCCCcEEEEecccCcE--
Q 007787 147 I---LKYVMPQSAFREILYKDFEKRKTALHDYLKN--KRYLIVLYDVFTNDVWDYLGEALPDHQNGSRVLVILFDDEI-- 219 (589)
Q Consensus 147 i---l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDDvw~~~~w~~l~~~l~~~~~gs~IivTTR~~~v-- 219 (589)
+ +..+............+.+.+...++..+.+ +++||||||||+...++.+ ..||+||||||.+.+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 4 3444421110111345667788888888876 7899999999997665532 468999999999875
Q ss_pred ------Eec---CCCChHHHHHhhccccCCCCC---C--------CCCCchhhhcccc---hh--HhhccchhhhhccC-
Q 007787 220 ------FNL---CILENEDMINLDSVPATPLRA---T--------YQERPLVCLYYGS---ES--LAENMKLTWLIRKR- 273 (589)
Q Consensus 220 ------~~l---~~L~~~~~~~Lf~~~a~~~~~---~--------c~glPlai~~~g~---~~--~~~~~~~~~~~~~~- 273 (589)
|.+ ++|+++++++||...++.... . |+|+|||++.+|+ .. -|+. ....+...
T Consensus 272 ~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~--~l~~l~~~~ 349 (591)
T 1z6t_A 272 SVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEY--YLKQLQNKQ 349 (591)
T ss_dssp TCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHH--HHHHHHSCC
T ss_pred hcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHH--HHHHHHHhH
Confidence 454 589999999999999876322 1 9999999999998 11 1111 11111110
Q ss_pred ------------CCc-----eecCCCCcchhhHhhhccccCCCeeechhhHHHHHHhh
Q 007787 274 ------------SPL-----FSIAQLPQRLKLCCLYLSACREGFEISTRQLNQLWIAE 314 (589)
Q Consensus 274 ------------~~l-----lsy~~L~~~lk~cfl~~~~fp~~~~~~~~~L~~l~~~~ 314 (589)
..+ .||+.||.+.|.||++||+||+++.++...+..+|..+
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 011 89999999999999999999999999988888888643
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=1.8e-19 Score=199.32 Aligned_cols=201 Identities=17% Similarity=0.092 Sum_probs=128.9
Q ss_pred cCCCCCCCEEEeecCCcccc---chhhcCCCCccEEEecCCccccccccccccccCceeeecC----cccC-CcccccCC
Q 007787 339 INLLLLLKYLKLNIPYLKHL---PASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRT----ITLP-AHPGKFCT 410 (589)
Q Consensus 339 ~~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~----~~lp-~~i~~~l~ 410 (589)
++.+++|++|++++|.++.+ |..+..+++|++|++++|.+..+|..+..+++|+.|+++. ...| ..+. .++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT-TCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhh-ccc
Confidence 34455555555555554433 4445555555555555555555555555555555555551 1112 2344 555
Q ss_pred CCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeecCCCCCCCCcc
Q 007787 411 SLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTELRDDPMPKPK 489 (589)
Q Consensus 411 ~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~ 489 (589)
+|++|++.++...+..+.. ++ .+++|++|++++|. +..-.+|. +..+++|+.|+|++|.+++..+..++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~-~~----~l~~L~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGI-FL----GLTSLNTLKMAGNS-----FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TCCEEECTTSCCEECCTTT-TT----TCTTCCEEECTTCE-----EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cCCEEECcCCCCCccchhh-hc----CCCCCCEEECCCCc-----CCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 5555554444443333333 43 44555555555431 10001566 88889999999999998888888888
Q ss_pred cccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCC-CCCEEEEeCCc
Q 007787 490 KLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVK-SLTKLELWWPR 565 (589)
Q Consensus 490 ~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~-~L~~L~l~~~~ 565 (589)
.+++|+.|++++|.+.+.. |..++.+++|+.|+|++|.+. .+|..+..++ +|+.|++++||
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~--------------~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLD--------------SSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TCTTCCEEECCSSCCSCEE--------------GGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred ccccCCEEECCCCcCCCcC--------------HHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 9999999999888887654 567788999999999999975 7888888897 59999999977
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=5.9e-19 Score=193.42 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=49.0
Q ss_pred CCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCC
Q 007787 465 QFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLK 544 (589)
Q Consensus 465 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~ 544 (589)
..+++|++|++++|.+.+..|..++++++|+.|++++|.+.+.. .+|..++.+++|+.|++++|.+.+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF------------KVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT------------HHHHTTTTCTTCCEEECTTSCCBS
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc------------cchhhhcCCCCCCEEECCCCcCCC
Confidence 45666777777777766666666677777777777666665421 112234445555555555555444
Q ss_pred CCccc-cccCCCCCEEEEeCCc
Q 007787 545 RLPED-LWRVKSLTKLELWWPR 565 (589)
Q Consensus 545 ~lp~~-l~~l~~L~~L~l~~~~ 565 (589)
.+|.. +..+++|++|++++|.
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSC
T ss_pred ccChhhhcCcccCCEEECCCCC
Confidence 33332 3444445555544443
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=193.38 Aligned_cols=43 Identities=16% Similarity=-0.029 Sum_probs=30.6
Q ss_pred ccCcccccccceeeEeecCCCCCCccc-cccCCCCCEEEEeCCc
Q 007787 523 IVEFEAIPKLESLIINPCAHLKRLPED-LWRVKSLTKLELWWPR 565 (589)
Q Consensus 523 ~~~~~~l~~L~~L~L~~n~~l~~lp~~-l~~l~~L~~L~l~~~~ 565 (589)
|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|.
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 344667777888888887776656654 6677788888888775
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=184.31 Aligned_cols=215 Identities=17% Similarity=0.157 Sum_probs=171.0
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcccccc-ccccccccCceeeec---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTP-DSIGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~--- 397 (589)
.+.+.+++.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 458999999999998776 599999999999998876 7899999999999999998874 569999999999999
Q ss_pred CcccCCc-ccccCCCCcccccccccCCCCch-hhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCC-C-CCCCCCccEE
Q 007787 398 TITLPAH-PGKFCTSLENLNFISVLHPSSCT-RDILGRLPSEFELLESLKLVNELKIPSQLSSIVLP-E-YQFPPSLIEL 473 (589)
Q Consensus 398 ~~~lp~~-i~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp-~-~~~l~~L~~L 473 (589)
...+|.. +. .+++|++|++.++....... .. +. .+++|++|++++|. .+. .++ . +..+++|+.|
T Consensus 112 l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~-~~----~l~~L~~L~l~~n~----~~~--~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 112 LSNLSSSWFK-PLSSLTFLNLLGNPYKTLGETSL-FS----HLTKLQILRVGNMD----TFT--KIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CSSCCHHHHT-TCTTCSEEECTTCCCSSSCSSCS-CT----TCTTCCEEEEEESS----SCC--EECTTTTTTCCEEEEE
T ss_pred CCcCCHhHhC-CCccCCEEECCCCCCcccCchhh-hc----cCCCCcEEECCCCc----ccc--ccCHHHccCCCCCCEE
Confidence 3455655 67 89999999987776543222 23 54 78999999999963 122 444 3 8899999999
Q ss_pred EEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCC--------
Q 007787 474 SLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKR-------- 545 (589)
Q Consensus 474 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~-------- 545 (589)
++++|.+.+..+..++.+++|++|++++|.+.... +..+..+++|+.|++++|.+.+.
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL--------------EIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH--------------HHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccch--------------hhhhhhcccccEEECCCCccccccccccccc
Confidence 99999998888999999999999999999874332 11233577888888888876542
Q ss_pred -----------------------CccccccCCCCCEEEEeCCc
Q 007787 546 -----------------------LPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 546 -----------------------lp~~l~~l~~L~~L~l~~~~ 565 (589)
+|..+..+++|++|++++|.
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 34446678889999998886
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=9e-19 Score=178.57 Aligned_cols=218 Identities=16% Similarity=0.065 Sum_probs=145.6
Q ss_pred cEEEEcCCCCccC-CcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccc-cccccccCceeeecCc-
Q 007787 323 KLLNLGTIVLEEY-PAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFRTI- 399 (589)
Q Consensus 323 r~L~L~~n~l~~~-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~- 399 (589)
+.|++++|.++.+ |..|+.+++|++|++++|.++.+|..+. ++|++|++++|.+..++. .+.++++|++|+++..
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 6788888888744 7778888888888888888877776554 677777777777766644 3667777777777622
Q ss_pred -----ccCCcccccCCCCcccccccccC---------------------CCCchhhhhcCcccCCCCCCeEEEeeCCCCC
Q 007787 400 -----TLPAHPGKFCTSLENLNFISVLH---------------------PSSCTRDILGRLPSEFELLESLKLVNELKIP 453 (589)
Q Consensus 400 -----~lp~~i~~~l~~L~~L~l~~~~~---------------------~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp 453 (589)
..+..+. .+++|++|++.++.. .+..+.. +. .+++|+.|++++|.
T Consensus 157 l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~-~~----~l~~L~~L~Ls~n~--- 227 (330)
T 1xku_A 157 LKSSGIENGAFQ-GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS-LK----GLNNLAKLGLSFNS--- 227 (330)
T ss_dssp CCGGGBCTTGGG-GCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGG-GT----TCTTCCEEECCSSC---
T ss_pred CCccCcChhhcc-CCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHH-hc----CCCCCCEEECCCCc---
Confidence 2344455 666666666554433 1111222 32 34455555555432
Q ss_pred CCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccc
Q 007787 454 SQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPK 531 (589)
Q Consensus 454 ~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~ 531 (589)
+. .++. +..+++|+.|+|++|.+. ..|..+..+++|++|++++|.+++.. ...|... ......+.
T Consensus 228 --l~--~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~----~~~f~~~----~~~~~~~~ 294 (330)
T 1xku_A 228 --IS--AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG----SNDFCPP----GYNTKKAS 294 (330)
T ss_dssp --CC--EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC----TTSSSCS----SCCTTSCC
T ss_pred --Cc--eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccC----hhhcCCc----cccccccc
Confidence 12 3333 778999999999999986 67778999999999999999987643 1112110 01123578
Q ss_pred cceeeEeecCCCC--CCccccccCCCCCEEEEeCC
Q 007787 532 LESLIINPCAHLK--RLPEDLWRVKSLTKLELWWP 564 (589)
Q Consensus 532 L~~L~L~~n~~l~--~lp~~l~~l~~L~~L~l~~~ 564 (589)
|+.|++++|++.. ..|..+..+++|+.+++++|
T Consensus 295 l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccceEeecCcccccccCccccccccceeEEEeccc
Confidence 9999999999853 45677889999999999887
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=187.76 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=96.9
Q ss_pred cEEEEcCCCCccCC-cccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCccccccccccccccCceeeecC--
Q 007787 323 KLLNLGTIVLEEYP-AGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRT-- 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~-- 398 (589)
+.|+|++|.++.++ ..|.++++|++|+|++|.++.+ |..++++++|++|++++|.+..+|.. .+++|++|+++.
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc
Confidence 77999999998555 6899999999999999999966 67889999999999999999999887 799999999982
Q ss_pred ---cccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCC--CeEEEeeCC
Q 007787 399 ---ITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELL--ESLKLVNEL 450 (589)
Q Consensus 399 ---~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L--~~L~l~~~~ 450 (589)
..+|..++ .+++|++|++.++...+ .. ++ .+++| +.|+++++.
T Consensus 102 l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~-~~----~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 102 FDALPICKEFG-NMSQLKFLGLSTTHLEK---SS-VL----PIAHLNISKVLLVLGE 149 (520)
T ss_dssp CSSCCCCGGGG-GCTTCCEEEEEESSCCG---GG-GG----GGTTSCEEEEEEEECT
T ss_pred cccccchhhhc-cCCcceEEEecCcccch---hh-cc----ccccceeeEEEeeccc
Confidence 24677888 99999999988776644 23 44 45666 999999864
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=7.1e-19 Score=187.43 Aligned_cols=213 Identities=18% Similarity=0.187 Sum_probs=177.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCcccccc-ccccccccCceeeec---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRCTP-DSIGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~--- 397 (589)
+.++.+++.++.+|..+. ++|++|+|++|.++.+ |..+.++++|++|+|++|.+..++ ..+.++++|++|+++
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 457888888999998775 7999999999999966 567899999999999999998875 679999999999999
Q ss_pred CcccCCc-ccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEE
Q 007787 398 TITLPAH-PGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELS 474 (589)
Q Consensus 398 ~~~lp~~-i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~ 474 (589)
...+|.. +. .+++|++|++.++......... +. .+++|+.|+++++. .+. .+|. +..+++|++|+
T Consensus 135 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~-~~----~l~~L~~L~l~~~~----~l~--~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 135 LTVIPSGAFE-YLSKLRELWLRNNPIESIPSYA-FN----RVPSLMRLDLGELK----KLE--YISEGAFEGLFNLKYLN 202 (452)
T ss_dssp CSBCCTTTSS-SCTTCCEEECCSCCCCEECTTT-TT----TCTTCCEEECCCCT----TCC--EECTTTTTTCTTCCEEE
T ss_pred CCccChhhhc-ccCCCCEEECCCCCcceeCHhH-Hh----cCCcccEEeCCCCC----Ccc--ccChhhccCCCCCCEEE
Confidence 3455554 66 8999999998777664333334 65 78999999999843 233 4555 88999999999
Q ss_pred EEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCC
Q 007787 475 LANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVK 554 (589)
Q Consensus 475 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~ 554 (589)
|++|.+.+. +.+..+++|+.|+|++|.+.+.. |..+..+++|+.|++++|.+.+..|..|..++
T Consensus 203 L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~--------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 203 LGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIR--------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp CTTSCCSSC--CCCTTCTTCCEEECTTSCCSEEC--------------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCccccc--ccccccccccEEECcCCcCcccC--------------cccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 999998654 36889999999999999986543 55678899999999999999877788899999
Q ss_pred CCCEEEEeCCc
Q 007787 555 SLTKLELWWPR 565 (589)
Q Consensus 555 ~L~~L~l~~~~ 565 (589)
+|+.|++++|.
T Consensus 267 ~L~~L~L~~N~ 277 (452)
T 3zyi_A 267 SLVELNLAHNN 277 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 99999999986
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=9.6e-19 Score=179.56 Aligned_cols=225 Identities=17% Similarity=0.187 Sum_probs=124.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCc---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTI--- 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~--- 399 (589)
+.|++++|.++.+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.....+..+..+++|++|+++..
T Consensus 91 ~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 91 TNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp CEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred CEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC
Confidence 55666666666543 46666666666666666665554 55666666666666632222233555666666666511
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCC-----CCCcee--------cCCCC
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIP-----SQLSSI--------VLPEY 464 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp-----~~L~~L--------~lp~~ 464 (589)
.++. +. .+++|++|++.++...+. .. +. .+++|+.|+++++. .++ ++|+.| .+|.+
T Consensus 169 ~~~~-~~-~l~~L~~L~l~~n~l~~~--~~-~~----~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 239 (347)
T 4fmz_A 169 DVTP-IA-NLTDLYSLSLNYNQIEDI--SP-LA----SLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPL 239 (347)
T ss_dssp CCGG-GG-GCTTCSEEECTTSCCCCC--GG-GG----GCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred Cchh-hc-cCCCCCEEEccCCccccc--cc-cc----CCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcch
Confidence 1221 44 555666665544433111 11 21 33444444444432 011 133333 11114
Q ss_pred CCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCC-----------ccccCcccccccc
Q 007787 465 QFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLK-----------EWIVEFEAIPKLE 533 (589)
Q Consensus 465 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~-----------~l~~~~~~l~~L~ 533 (589)
..+++|+.|++++|.+... +.+..+++|++|++++|.+.+.. ....+++|+ ..+..++.+++|+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 4556666666666665432 34556666666666666554431 123344441 1244577899999
Q ss_pred eeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 534 SLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 534 ~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+|++++|++.+..| +..+++|++|++++|+
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhc
Confidence 99999999866444 8899999999999998
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=2.7e-19 Score=195.40 Aligned_cols=239 Identities=17% Similarity=0.159 Sum_probs=144.0
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCccccchh-hcCCCCccEEEecCCcccc--ccccccccccCceeeec-
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLKHLPAS-LCNLLNLYTIDMPSSYVRC--TPDSIGKMHELRHLNFR- 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~--lp~~~~~L~~L~~L~l~- 397 (589)
|+|++++|.++ ..|..|+++++|++|++++|.++.+|+. ++++++|++|++++|.+.. .|..++++++|++|+++
T Consensus 53 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence 66777777776 3345677777777777777777765544 6777777777777776653 35567777777777776
Q ss_pred ---CcccC-CcccccCCCCcccccccccCCCCchhhhhcCcc--------------------cCCCCCCeEEEeeCC--C
Q 007787 398 ---TITLP-AHPGKFCTSLENLNFISVLHPSSCTRDILGRLP--------------------SEFELLESLKLVNEL--K 451 (589)
Q Consensus 398 ---~~~lp-~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~--------------------~~l~~L~~L~l~~~~--~ 451 (589)
...+| ..+. .+++|++|++.++...+..+.. ++.++ ..+++|+.|++++|. .
T Consensus 133 n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 133 VETFSEIRRIDFA-GLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp SSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred CccccccCHhhhh-cccccCeeeccCCcccccChhh-hhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 22343 3456 6777777776666554444444 44322 135667777776643 1
Q ss_pred C---C-------CCCceec-------------CCC-------------------------------CC------------
Q 007787 452 I---P-------SQLSSIV-------------LPE-------------------------------YQ------------ 465 (589)
Q Consensus 452 l---p-------~~L~~L~-------------lp~-------------------------------~~------------ 465 (589)
+ | ++|+.|. ++. +.
T Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 290 (549)
T 2z81_A 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290 (549)
T ss_dssp CCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred ccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccc
Confidence 0 0 1222220 000 00
Q ss_pred -----------------CCCCccEEEEEeecCCCCCCCCc-ccccccceeEEecCcccCceee--EecCCCCCCC-----
Q 007787 466 -----------------FPPSLIELSLANTELRDDPMPKP-KKLLHLQVLKLKKNSFIGRKLI--CRFGCFPSLK----- 520 (589)
Q Consensus 466 -----------------~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~--~~~~~f~~L~----- 520 (589)
..++|+.|++++|.+. ..|..+ +.+++|++|++++|.+.+..+. ...+.+++|+
T Consensus 291 ~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369 (549)
T ss_dssp CBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred cccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence 1134555666666553 333333 5688888888888887654311 1134556662
Q ss_pred -----ccc---cCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 521 -----EWI---VEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 521 -----~l~---~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
.++ ..++.+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 370 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp TSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 222 23677889999999998775 678778888888888888876
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.3e-19 Score=192.82 Aligned_cols=209 Identities=17% Similarity=0.109 Sum_probs=168.1
Q ss_pred cEEEEcCCCCccC-CcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCccc
Q 007787 323 KLLNLGTIVLEEY-PAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITL 401 (589)
Q Consensus 323 r~L~L~~n~l~~~-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~l 401 (589)
+.|+|++|.++.+ |..|+.+++|++|+|++|.++.+++ ++.+++|++|+|++|.+..+|.. ++|++|+++...+
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l 111 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNI 111 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCC
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcC
Confidence 7799999999955 5789999999999999999986665 89999999999999999887743 8999999994444
Q ss_pred CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CC-CCCCccEEEEEeec
Q 007787 402 PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQ-FPPSLIELSLANTE 479 (589)
Q Consensus 402 p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~-~l~~L~~L~L~~n~ 479 (589)
.......+++|++|++.++...+..+.. ++ .+++|+.|++++|. +.. ..|. +. .+++|+.|+|++|.
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~----~l~~L~~L~Ls~N~-----l~~-~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLD-EG----CRSRVQYLDLKLNE-----IDT-VNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBC-GG----GGSSEEEEECTTSC-----CCE-EEGGGGGGGTTTCCEEECTTSC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchh-hc----CCCCCCEEECCCCC-----CCC-cChHHHhhhCCcccEEecCCCc
Confidence 3222226789999998887776665666 76 68899999999873 221 1333 43 78999999999999
Q ss_pred CCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEE
Q 007787 480 LRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKL 559 (589)
Q Consensus 480 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L 559 (589)
+++.+ .+..+++|+.|+|++|.+++. |..++.+++|+.|++++|.+. .+|..+..+++|+.|
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 242 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFM---------------GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEE---------------CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCC---------------CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEE
Confidence 87653 344689999999999988653 345778999999999999986 478888999999999
Q ss_pred EEeCCc
Q 007787 560 ELWWPR 565 (589)
Q Consensus 560 ~l~~~~ 565 (589)
++++|+
T Consensus 243 ~l~~N~ 248 (487)
T 3oja_A 243 DLRGNG 248 (487)
T ss_dssp ECTTCC
T ss_pred EcCCCC
Confidence 999987
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=2.5e-18 Score=183.16 Aligned_cols=168 Identities=15% Similarity=0.097 Sum_probs=97.8
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCcccC
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITLP 402 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~lp 402 (589)
|.|++++|.++.+| ++.+++|++|++++|.++.+| ++++++|++|++++|.+..+| ++.+++|++|+++...+.
T Consensus 67 ~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 67 TKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp SEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCS
T ss_pred CEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccc
Confidence 55666666666554 566666666666666666554 566666666666666665554 566666666666621111
Q ss_pred C-cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCC----CCCcee-----cCCC--CCCCC
Q 007787 403 A-HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIP----SQLSSI-----VLPE--YQFPP 468 (589)
Q Consensus 403 ~-~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp----~~L~~L-----~lp~--~~~l~ 468 (589)
. .++ .+++|++|++..+...+.. . ++ .+++|+.|++++|. .+| ++|+.| .+.. +..++
T Consensus 141 ~l~l~-~l~~L~~L~l~~n~~~~~~--~-~~----~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~ 212 (457)
T 3bz5_A 141 EIDVS-HNTQLTELDCHLNKKITKL--D-VT----PQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNI 212 (457)
T ss_dssp CCCCT-TCTTCCEEECTTCSCCCCC--C-CT----TCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCT
T ss_pred eeccc-cCCcCCEEECCCCCccccc--c-cc----cCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCC
Confidence 0 144 5666666665555332222 2 32 45666666666653 222 244444 2222 56677
Q ss_pred CccEEEEEeecCCCCCCCCcccccccceeEEecCcccCc
Q 007787 469 SLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGR 507 (589)
Q Consensus 469 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 507 (589)
+|+.|++++|.+++ +| ++.+++|+.|++++|.+.+.
T Consensus 213 ~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 77777777777765 33 66777777777777776654
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=184.63 Aligned_cols=213 Identities=19% Similarity=0.189 Sum_probs=176.7
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCcccccc-ccccccccCceeeec---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCTP-DSIGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~--- 397 (589)
+.++.+++.++.+|..+. +++++|+|++|.++.++ ..+.++++|++|+|++|.+..++ ..|.++++|++|+++
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 458888889999998776 78999999999999765 67899999999999999998875 569999999999999
Q ss_pred CcccCC-cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEE
Q 007787 398 TITLPA-HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELS 474 (589)
Q Consensus 398 ~~~lp~-~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~ 474 (589)
...+|. .+. .+++|++|++.++......... +. .+++|+.|+++++. .+. .+|. +..+++|++|+
T Consensus 124 l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~-~~----~l~~L~~L~l~~~~----~l~--~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 124 LTTIPNGAFV-YLSKLKELWLRNNPIESIPSYA-FN----RIPSLRRLDLGELK----RLS--YISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CSSCCTTTSC-SCSSCCEEECCSCCCCEECTTT-TT----TCTTCCEEECCCCT----TCC--EECTTTTTTCSSCCEEE
T ss_pred CCeeCHhHhh-ccccCceeeCCCCcccccCHHH-hh----hCcccCEeCCCCCC----Ccc--eeCcchhhcccccCeec
Confidence 445555 477 8999999998777654333334 65 78999999999843 223 4555 88999999999
Q ss_pred EEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCC
Q 007787 475 LANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVK 554 (589)
Q Consensus 475 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~ 554 (589)
|++|.++.. | .+..+++|+.|+|++|.+.+.. |..+..+++|+.|++++|.+.+..|..|..++
T Consensus 192 L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~--------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 192 LAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIR--------------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp CTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEEC--------------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred CCCCcCccc-c-ccCCCcccCEEECCCCccCccC--------------hhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 999998643 3 5889999999999999886543 44677899999999999999877777899999
Q ss_pred CCCEEEEeCCc
Q 007787 555 SLTKLELWWPR 565 (589)
Q Consensus 555 ~L~~L~l~~~~ 565 (589)
+|+.|++++|.
T Consensus 256 ~L~~L~L~~N~ 266 (440)
T 3zyj_A 256 SLVEINLAHNN 266 (440)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEECCCCC
Confidence 99999999986
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=2.2e-19 Score=182.16 Aligned_cols=209 Identities=17% Similarity=0.102 Sum_probs=161.7
Q ss_pred cEEEEcCCCCccCC-cccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCccc
Q 007787 323 KLLNLGTIVLEEYP-AGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITL 401 (589)
Q Consensus 323 r~L~L~~n~l~~~p-~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~l 401 (589)
+.|+|++|.++.++ ..|+.+++|++|+|++|.++.+++ +..+++|++|++++|.+..+|. +++|++|+++...+
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l 111 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNI 111 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCC
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCcc
Confidence 67999999999554 689999999999999999987665 8899999999999998887763 48999999984433
Q ss_pred CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-C-CCCCCccEEEEEeec
Q 007787 402 PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-Y-QFPPSLIELSLANTE 479 (589)
Q Consensus 402 p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~-~~l~~L~~L~L~~n~ 479 (589)
.......+++|++|++.++...+..+.. ++ .+++|+.|++++|. +..+ .|. + ..+++|+.|+|++|.
T Consensus 112 ~~~~~~~~~~L~~L~l~~N~l~~~~~~~-~~----~l~~L~~L~Ls~N~-----l~~~-~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLD-EG----CRSRVQYLDLKLNE-----IDTV-NFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp SEEEECCCSSCEEEECCSSCCCSGGGBC-TG----GGSSEEEEECTTSC-----CCEE-EGGGGGGGTTTCCEEECTTSC
T ss_pred CCcCccccCCCCEEECCCCCCCCccchh-hh----ccCCCCEEECCCCC-----CCcc-cHHHHhhccCcCCEEECCCCc
Confidence 3221116788999998777665544445 65 67899999999863 2311 122 3 467899999999999
Q ss_pred CCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEE
Q 007787 480 LRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKL 559 (589)
Q Consensus 480 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L 559 (589)
+++.. ....+++|+.|++++|.+.+. |..+..+++|+.|++++|.+. .+|..+..+++|+.|
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~l---------------~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFM---------------GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEE---------------CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred Ccccc--cccccccCCEEECCCCcCCcc---------------hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence 86542 334589999999998888542 345778899999999999875 578788899999999
Q ss_pred EEeCCc
Q 007787 560 ELWWPR 565 (589)
Q Consensus 560 ~l~~~~ 565 (589)
++++|+
T Consensus 243 ~l~~N~ 248 (317)
T 3o53_A 243 DLRGNG 248 (317)
T ss_dssp ECTTCC
T ss_pred EccCCC
Confidence 999987
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=2.7e-18 Score=182.87 Aligned_cols=204 Identities=17% Similarity=0.072 Sum_probs=147.5
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Cc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~ 399 (589)
+.|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++|.+..+| ++++++|++|+++ ..
T Consensus 45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT 119 (457)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCS
T ss_pred CEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCC
Confidence 78999999999887 6999999999999999999987 899999999999999998886 8899999999999 33
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeec
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTE 479 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~ 479 (589)
.+| ++ .+++|++|++.++...+. . ++ .+++|+.|++++|..+. .+ .+..+++|+.|++++|.
T Consensus 120 ~l~--~~-~l~~L~~L~l~~N~l~~l---~-l~----~l~~L~~L~l~~n~~~~------~~-~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 120 KLD--VS-QNPLLTYLNCARNTLTEI---D-VS----HNTQLTELDCHLNKKIT------KL-DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCC--CT-TCTTCCEEECTTSCCSCC---C-CT----TCTTCCEEECTTCSCCC------CC-CCTTCTTCCEEECCSSC
T ss_pred eec--CC-CCCcCCEEECCCCcccee---c-cc----cCCcCCEEECCCCCccc------cc-ccccCCcCCEEECCCCc
Confidence 344 77 999999999887776442 3 44 78899999999874110 11 15566667777777776
Q ss_pred CCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC----------CccccCcccccccceeeEeecCCCCCCccc
Q 007787 480 LRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL----------KEWIVEFEAIPKLESLIINPCAHLKRLPED 549 (589)
Q Consensus 480 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L----------~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~ 549 (589)
+++. + ++.+++|+.|++++|.+.+.. ...+++| ..+| ++.+++|+.|++++|.+.+..+
T Consensus 182 l~~l-~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~-- 250 (457)
T 3bz5_A 182 ITEL-D--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDV-- 250 (457)
T ss_dssp CCCC-C--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCC--
T ss_pred ccee-c--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCH--
Confidence 6553 2 566667777777666665531 2333333 2233 5567788888888887765332
Q ss_pred cccCCCCCEEEE
Q 007787 550 LWRVKSLTKLEL 561 (589)
Q Consensus 550 l~~l~~L~~L~l 561 (589)
..+++|+.|++
T Consensus 251 -~~l~~L~~L~l 261 (457)
T 3bz5_A 251 -STLSKLTTLHC 261 (457)
T ss_dssp -TTCTTCCEEEC
T ss_pred -HHCCCCCEEec
Confidence 33444444433
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.76 E-value=2.5e-18 Score=183.21 Aligned_cols=237 Identities=14% Similarity=0.078 Sum_probs=179.5
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCcc-cc-chhhcCCCCccEEEecCCccccc-cccccccccCceeeecC
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLK-HL-PASLCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFRT 398 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~ 398 (589)
|.|+|++|.++ ..|..|+++++|++|++++|.+. .+ |..+.++++|++|++++|.+..+ |..+.++++|++|+++.
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence 78999999999 45889999999999999999986 55 45789999999999999988776 77899999999999993
Q ss_pred ccc----CCc--ccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC---CCCC---------------
Q 007787 399 ITL----PAH--PGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL---KIPS--------------- 454 (589)
Q Consensus 399 ~~l----p~~--i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~---~lp~--------------- 454 (589)
..+ |.. +. .+++|++|++.++...+..+...++ .+++|++|++++|. ..|.
T Consensus 113 n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 113 CNLDGAVLSGNFFK-PLTSLEMLVLRDNNIKKIQPASFFL----NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp SCCBTHHHHSSTTT-TCTTCCEEECCSSBCCSCCCCGGGG----GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred CCCCccccCccccc-CcccCCEEECCCCccCccCcccccC----CCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 333 333 77 8999999998888775554543144 78899999999864 2221
Q ss_pred -------------------------CCceecCCC--C-------------------------------------------
Q 007787 455 -------------------------QLSSIVLPE--Y------------------------------------------- 464 (589)
Q Consensus 455 -------------------------~L~~L~lp~--~------------------------------------------- 464 (589)
+|+.|.+.. +
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 122220000 0
Q ss_pred --C--CCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCC----------cc-ccCcccc
Q 007787 465 --Q--FPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLK----------EW-IVEFEAI 529 (589)
Q Consensus 465 --~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~----------~l-~~~~~~l 529 (589)
. ..++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+.. +.....+++|+ .+ |..++.+
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 0 1246777778777777777888999999999999999886532 11234455552 22 4567788
Q ss_pred cccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 530 PKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 530 ~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
++|++|+|++|.+.+..|..+..+++|++|++++|.
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 999999999999877778888999999999999986
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=4.8e-18 Score=169.86 Aligned_cols=194 Identities=17% Similarity=0.136 Sum_probs=117.2
Q ss_pred CCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccc-cccccccccCceeeec---CcccCCcccccCCCCccc
Q 007787 340 NLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFR---TITLPAHPGKFCTSLENL 415 (589)
Q Consensus 340 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~---~~~lp~~i~~~l~~L~~L 415 (589)
+++++|+.++++++.++.+|..+. ++|++|++++|.+..+ |..+.++++|++|+++ ...+|.. . .+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~-~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-G-TLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-S-CCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-C-CCCcCCEE
Confidence 334444444444444444443332 3444444444444333 2234444444444444 1122221 3 45555555
Q ss_pred ccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccc
Q 007787 416 NFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLH 493 (589)
Q Consensus 416 ~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 493 (589)
++.++... ..+.. +. .+++|+.|++++|. ++ .+|. |..+++|+.|+|++|.+.+.++..+..+++
T Consensus 83 ~Ls~N~l~-~l~~~-~~----~l~~L~~L~l~~N~-----l~--~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLL-GQ----TLPALTVLDVSFNR-----LT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp ECCSSCCS-SCCCC-TT----TCTTCCEEECCSSC-----CC--CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ECCCCcCC-cCchh-hc----cCCCCCEEECCCCc-----Cc--ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 54443321 22333 43 56677777777753 22 4553 778888999999998888777777888889
Q ss_pred cceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 494 LQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 494 L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
|+.|++++|.+.+.. +..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++||
T Consensus 150 L~~L~L~~N~l~~l~--------------~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 150 LEKLSLANNNLTELP--------------AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECTTSCCSCCC--------------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCcCCccC--------------HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 999999888875432 223456888999999988875 678778888889999998876
No 60
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=1.8e-18 Score=171.42 Aligned_cols=216 Identities=20% Similarity=0.194 Sum_probs=171.1
Q ss_pred hhhHHHHHHhhCCCc--------cCcccEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecC
Q 007787 304 TRQLNQLWIAEGFIP--------ETARKLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPS 375 (589)
Q Consensus 304 ~~~L~~l~~~~~~i~--------~~ler~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 375 (589)
..+++...+...-+. ..+ +.|++++|.++.++ .++.+++|++|++++|.+..++ .++.+++|++|++++
T Consensus 18 ~~~l~~l~l~~~~~~~~~~~~~l~~L-~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVTQNELNSI-DQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTC-CEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHHHhcCcccccccccccccce-eeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 345556666554443 222 67999999988766 4888999999999999999875 688999999999999
Q ss_pred Ccccccccc-ccccccCceeeec---CcccCCc-ccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC
Q 007787 376 SYVRCTPDS-IGKMHELRHLNFR---TITLPAH-PGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL 450 (589)
Q Consensus 376 ~~l~~lp~~-~~~L~~L~~L~l~---~~~lp~~-i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~ 450 (589)
|.+..+|.. +.++++|++|+++ ...+|.. +. .+++|++|++.++...+..+.. ++ .+++|+.|++++|.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~----~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGV-FD----KLTNLTELDLSYNQ 168 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTT-TT----TCTTCCEEECCSSC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHH-hc----cCccCCEEECCCCC
Confidence 999888665 6899999999998 3344443 67 8999999998877665444444 55 78899999999874
Q ss_pred CCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCccc
Q 007787 451 KIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEA 528 (589)
Q Consensus 451 ~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~ 528 (589)
+. .+|. +..+++|+.|++++|.+.+.++..++.+++|+.|++++|.+.+ .
T Consensus 169 -----l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------------------~ 220 (272)
T 3rfs_A 169 -----LQ--SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------------------T 220 (272)
T ss_dssp -----CC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC---------------------C
T ss_pred -----cC--ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc---------------------c
Confidence 33 4555 7889999999999999988888889999999999999887743 3
Q ss_pred ccccceeeEeecCCCCCCccccccCCCC
Q 007787 529 IPKLESLIINPCAHLKRLPEDLWRVKSL 556 (589)
Q Consensus 529 l~~L~~L~L~~n~~l~~lp~~l~~l~~L 556 (589)
+|+|+.|++..|.+.+.+|..++.++..
T Consensus 221 ~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 221 CPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 6778889999998888888877766553
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=3.7e-18 Score=191.40 Aligned_cols=218 Identities=19% Similarity=0.171 Sum_probs=173.1
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCcc-ccc-hhhcCCCCccEEEecCCccccc-cccccccccCceeeecC
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLK-HLP-ASLCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFRT 398 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~-~lp-~~i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~ 398 (589)
+.|++++|.++ ..|..+..+++|++|++++|.+. .+| ..+.++++|++|++++|.+..+ |..+..+++|+.|+++.
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 67899999988 55778889999999999999987 566 5778899999999999987666 45688899999999982
Q ss_pred ------cccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCcee---cC---CC--C
Q 007787 399 ------ITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSI---VL---PE--Y 464 (589)
Q Consensus 399 ------~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L---~l---p~--~ 464 (589)
..+|..+. .+++|++|++.++...+..+.. +. .+++|+.|++++|. +..+ .+ |. +
T Consensus 464 n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~-~~----~l~~L~~L~Ls~N~-----l~~~~~~~~~~~~~~~~ 532 (680)
T 1ziw_A 464 VALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDM-LE----GLEKLEILDLQHNN-----LARLWKHANPGGPIYFL 532 (680)
T ss_dssp SCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTT-TT----TCTTCCEEECCSSC-----CGGGGSTTSTTSCCCTT
T ss_pred ccccccccCCcccc-cCCCCCEEECCCCCCCcCChhh-hc----cccccCEEeCCCCC-----ccccchhhccCCcchhh
Confidence 45677788 8999999998777665544455 65 78899999999864 2211 11 22 6
Q ss_pred CCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCC
Q 007787 465 QFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLK 544 (589)
Q Consensus 465 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~ 544 (589)
..+++|+.|+|++|.+...++..|+++++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+
T Consensus 533 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~--------------~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP--------------ASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------------TTTTTTCTTCCEEECTTSCCCB
T ss_pred cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC--------------HhHhCCCCCCCEEECCCCcCCc
Confidence 78899999999999998666667999999999999999886433 2345678999999999998876
Q ss_pred CCccccc-cCCCCCEEEEeCCc
Q 007787 545 RLPEDLW-RVKSLTKLELWWPR 565 (589)
Q Consensus 545 ~lp~~l~-~l~~L~~L~l~~~~ 565 (589)
..|..+. .+++|+.|++++||
T Consensus 599 ~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 599 VEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCHHHHHHHHTTCSEEECTTCC
T ss_pred cChhHhcccccccCEEEccCCC
Confidence 6665566 78999999999988
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.7e-17 Score=182.35 Aligned_cols=37 Identities=30% Similarity=0.186 Sum_probs=33.9
Q ss_pred cccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 528 AIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 528 ~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
.+++|+.|+|++|.+. .+|..+.++++|+.|++++|+
T Consensus 259 ~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 5789999999999876 789889999999999999998
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=190.77 Aligned_cols=218 Identities=17% Similarity=0.079 Sum_probs=123.7
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCccc-
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITL- 401 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~l- 401 (589)
+.|++++|.++.+|..+..+ +|++|++++|.+..+|. ..+++|+.|++++|.+...... ..+++|++|+++...+
T Consensus 285 ~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 285 SSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp SEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCB
T ss_pred cEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccC
Confidence 56777777777777777777 77777777777776664 3455555555555543222111 4455555555551111
Q ss_pred -----CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC---CCC-------CCCcee-------
Q 007787 402 -----PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL---KIP-------SQLSSI------- 459 (589)
Q Consensus 402 -----p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~---~lp-------~~L~~L------- 459 (589)
|..+. .+++|++|++.++... ..+.. +. .+++|+.|+++++. ..| ++|+.|
T Consensus 361 ~~~~~~~~~~-~~~~L~~L~l~~n~l~-~~~~~-~~----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 361 FKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSN-FL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp EEEEEEHHHH-TCSCCCEEECCSCSEE-EEEEE-EE----TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred cccccccccc-ccCccCEEECCCCccc-ccccc-cc----ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 23344 5555555554443321 11222 22 44555555555431 000 000000
Q ss_pred --cCCC-CCCCCCccEEEEEeecCC-CCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCccccccccee
Q 007787 460 --VLPE-YQFPPSLIELSLANTELR-DDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESL 535 (589)
Q Consensus 460 --~lp~-~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L 535 (589)
..|. +..+++|+.|++++|.+. +..|..++.+++|+.|++++|.+.+.. |..++.+++|++|
T Consensus 434 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~~~l~~L~~L 499 (570)
T 2z63_A 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--------------PTAFNSLSSLQVL 499 (570)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--------------TTTTTTCTTCCEE
T ss_pred cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC--------------hhhhhcccCCCEE
Confidence 1233 445555555555555543 234445555555555555555543321 5567889999999
Q ss_pred eEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 536 IINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 536 ~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
++++|.+.+..|..+..+++|+.|++++||
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999999877667778999999999999976
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=1.1e-17 Score=179.06 Aligned_cols=223 Identities=18% Similarity=0.194 Sum_probs=160.3
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Cc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~ 399 (589)
|.|++++|.+..+|. +..+++|++|++++|.++.+|+ ++++++|++|++++|.+..++. +.++++|++|+++ ..
T Consensus 49 ~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~ 125 (466)
T 1o6v_A 49 TTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT 125 (466)
T ss_dssp CEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred cEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC
Confidence 789999999998875 8889999999999999999887 9999999999999999988877 9999999999999 33
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC-CCC-----CCCcee-----cCC---CCC
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL-KIP-----SQLSSI-----VLP---EYQ 465 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~-~lp-----~~L~~L-----~lp---~~~ 465 (589)
.+|. +. .+++|++|++.++...+ +.. ++ .+++|+.|+++++- .++ ++|+.| .+. .+.
T Consensus 126 ~~~~-~~-~l~~L~~L~l~~n~l~~--~~~-~~----~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 196 (466)
T 1o6v_A 126 DIDP-LK-NLTNLNRLELSSNTISD--ISA-LS----GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 196 (466)
T ss_dssp CCGG-GT-TCTTCSEEEEEEEEECC--CGG-GT----TCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred CChH-Hc-CCCCCCEEECCCCccCC--Chh-hc----cCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhc
Confidence 4443 77 99999999988876533 234 54 67778888776521 111 244444 111 145
Q ss_pred CCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCC----------ccccCccccccccee
Q 007787 466 FPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLK----------EWIVEFEAIPKLESL 535 (589)
Q Consensus 466 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~----------~l~~~~~~l~~L~~L 535 (589)
.+++|++|++++|.+.+..+ ++.+++|+.|++++|.+.+.. ....+++|+ .++. +..+++|+.|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 270 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL 270 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch---hhhcCCCCCEEECCCCccccchh-hhcCCCCCEE
Confidence 66777777777777655433 666777777777777665431 122334442 1222 5677888888
Q ss_pred eEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 536 IINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 536 ~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
++++|.+.+ +|. +..+++|+.|++++|.
T Consensus 271 ~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 271 KLGANQISN-ISP-LAGLTALTNLELNENQ 298 (466)
T ss_dssp ECCSSCCCC-CGG-GTTCTTCSEEECCSSC
T ss_pred ECCCCccCc-ccc-ccCCCccCeEEcCCCc
Confidence 888887754 443 7778888888888875
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=186.63 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=57.7
Q ss_pred cEEEEcCCCCccC-CcccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCccccccc-cccccccCceeeecC-
Q 007787 323 KLLNLGTIVLEEY-PAGINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFRT- 398 (589)
Q Consensus 323 r~L~L~~n~l~~~-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~- 398 (589)
|+|+|++|.++.+ |..|+++++|++|+|++|.++.+| ..++++++|++|++++|.+..+|. .++++++|++|+++.
T Consensus 55 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS
T ss_pred eEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC
Confidence 5566666666633 345666666666666666666444 455666666666666666655544 366666666666661
Q ss_pred ----cccCCcccccCCCCccccccccc
Q 007787 399 ----ITLPAHPGKFCTSLENLNFISVL 421 (589)
Q Consensus 399 ----~~lp~~i~~~l~~L~~L~l~~~~ 421 (589)
..+|..++ .+++|++|++.++.
T Consensus 135 ~l~~~~lp~~~~-~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 135 LIQSFKLPEYFS-NLTNLEHLDLSSNK 160 (570)
T ss_dssp CCCCCCCCGGGG-GCTTCCEEECTTSC
T ss_pred ccceecChhhhc-ccCCCCEEeCcCCc
Confidence 12455566 66666666655444
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.6e-17 Score=167.69 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=148.9
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Cc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~ 399 (589)
+.|++++|.++.+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+..+++|++|+++ ..
T Consensus 44 ~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 44 TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQIT 120 (308)
T ss_dssp CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCC
T ss_pred CEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCC
Confidence 78999999999887 68899999999999999998887 999999999999999998886 68899999999999 33
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeec
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTE 479 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~ 479 (589)
.+| .+. .+++|++|++.++...+ ... ++ .+++|+.|++++|. +. .++.+..+++|+.|++++|.
T Consensus 121 ~~~-~l~-~l~~L~~L~l~~n~l~~--~~~-l~----~l~~L~~L~l~~n~-----l~--~~~~l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 121 DVT-PLA-GLSNLQVLYLDLNQITN--ISP-LA----GLTNLQYLSIGNAQ-----VS--DLTPLANLSKLTTLKADDNK 184 (308)
T ss_dssp CCG-GGT-TCTTCCEEECCSSCCCC--CGG-GG----GCTTCCEEECCSSC-----CC--CCGGGTTCTTCCEEECCSSC
T ss_pred Cch-hhc-CCCCCCEEECCCCccCc--Ccc-cc----CCCCccEEEccCCc-----CC--CChhhcCCCCCCEEECCCCc
Confidence 344 377 89999999987776532 223 44 67899999999873 22 33336778899999999999
Q ss_pred CCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCC
Q 007787 480 LRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLK 544 (589)
Q Consensus 480 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~ 544 (589)
+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|++.+
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~----------------~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS----------------PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG----------------GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc----------------cccCCCCCCEEEccCCeeec
Confidence 865443 888999999999888886532 35678899999999998754
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=9.6e-18 Score=166.41 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=154.6
Q ss_pred cEEEEcCCCCccCCc-ccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcccccc-ccccccccCceeeec--
Q 007787 323 KLLNLGTIVLEEYPA-GINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTP-DSIGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~-- 397 (589)
+.|++++|.++.++. .+.++++|++|++++|.++.++. .+.++++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 789999999996554 89999999999999999997765 6889999999999999998876 568999999999998
Q ss_pred -CcccCC-cccccCCCCcccccccccCCCC-chhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCcc-
Q 007787 398 -TITLPA-HPGKFCTSLENLNFISVLHPSS-CTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLI- 471 (589)
Q Consensus 398 -~~~lp~-~i~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~- 471 (589)
...++. .+. .+++|++|++.++...+. .+.. ++ .+++|+.|++++|. +. .++. +..+++|+
T Consensus 111 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~-~~----~l~~L~~L~Ls~N~-----l~--~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 111 NLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEY-FS----NLTNLEHLDLSSNK-----IQ--SIYCTDLRVLHQMPL 177 (276)
T ss_dssp CCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGG-GG----GCTTCCEEECCSSC-----CC--EECGGGGHHHHTCTT
T ss_pred CccccCchhcc-cCCCCCEEECcCCccceecCchh-hc----cCCCCCEEECCCCC-----CC--cCCHHHhhhhhhccc
Confidence 333433 577 899999999887776443 4666 76 78999999999974 23 3332 44455555
Q ss_pred ---EEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCC
Q 007787 472 ---ELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRL 546 (589)
Q Consensus 472 ---~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~l 546 (589)
.|++++|.+.+..+..+.. .+|+.|++++|.+.+.. +..++.+++|+.|++++|++....
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~--------------~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVP--------------DGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCC--------------TTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cceeeecCCCcccccCccccCC-CcccEEECCCCceeecC--------------HhHhcccccccEEEccCCcccccC
Confidence 8999999987666655544 58999999999886432 224567899999999999987543
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=3.7e-17 Score=181.33 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=87.2
Q ss_pred cEEEEcCCCCccCC-cccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcccccccc-ccccccCceeeec--
Q 007787 323 KLLNLGTIVLEEYP-AGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~-- 397 (589)
+.|||++|.|+.+| .+|.++++|++|+|++|.|+.+|+ ++.+|++|++|+|++|.+..+|.. |.++++|++|+++
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 78999999999765 589999999999999999998875 688999999999999999999864 8999999999999
Q ss_pred -CcccCC-cccccCCCCcccccccccC
Q 007787 398 -TITLPA-HPGKFCTSLENLNFISVLH 422 (589)
Q Consensus 398 -~~~lp~-~i~~~l~~L~~L~l~~~~~ 422 (589)
...+|. .++ .+++|++|++.++..
T Consensus 135 ~l~~l~~~~~~-~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 135 NLASLENFPIG-HLKTLKELNVAHNLI 160 (635)
T ss_dssp CCCCSTTCCCT-TCTTCCEEECCSSCC
T ss_pred cCCCCChhhhh-cCcccCeeccccCcc
Confidence 445554 477 999999999887765
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=4.5e-17 Score=173.22 Aligned_cols=220 Identities=21% Similarity=0.244 Sum_probs=127.0
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCcccC
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITLP 402 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~lp 402 (589)
+.|++++|.++.+| .++++++|++|++++|.++.+|..+ .+|++|++++|.+..+| .++++++|++|+++...+.
T Consensus 134 ~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 134 EYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred CEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC
Confidence 67888888888777 5888888888888888888777543 47888888888877777 5778888888888732222
Q ss_pred CcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCC---CCCcee--------cCCCCCCCCC
Q 007787 403 AHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIP---SQLSSI--------VLPEYQFPPS 469 (589)
Q Consensus 403 ~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp---~~L~~L--------~lp~~~~l~~ 469 (589)
. +....++|++|++.++... ..+ . ++ .+++|+.|++++|. .+| ++|+.| .+|. .+++
T Consensus 209 ~-l~~~~~~L~~L~l~~n~l~-~lp-~-~~----~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~--~~~~ 278 (454)
T 1jl5_A 209 K-LPDLPLSLESIVAGNNILE-ELP-E-LQ----NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE--LPQS 278 (454)
T ss_dssp S-CCCCCTTCCEEECCSSCCS-SCC-C-CT----TCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC--CCTT
T ss_pred c-CCCCcCcccEEECcCCcCC-ccc-c-cC----CCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc--ccCc
Confidence 1 1102346666665555432 222 3 44 55666666666643 222 244444 2222 2245
Q ss_pred ccEEEEEeecCCC--CCCCCc-------------ccc-cccceeEEecCcccCceeeEecCCCCCC----------Cccc
Q 007787 470 LIELSLANTELRD--DPMPKP-------------KKL-LHLQVLKLKKNSFIGRKLICRFGCFPSL----------KEWI 523 (589)
Q Consensus 470 L~~L~L~~n~l~~--~~~~~l-------------~~l-~~L~~L~L~~n~~~~~~~~~~~~~f~~L----------~~l~ 523 (589)
|+.|++++|.+++ ..|..+ ..+ ++|+.|++++|.+.+.. ..+++| +.+|
T Consensus 279 L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp-----~~~~~L~~L~L~~N~l~~lp 353 (454)
T 1jl5_A 279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP-----ALPPRLERLIASFNHLAEVP 353 (454)
T ss_dssp CCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCC
T ss_pred CCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccc-----ccCCcCCEEECCCCcccccc
Confidence 5555555555543 122111 122 36777777666665421 123333 3344
Q ss_pred cCcccccccceeeEeecCCCC--CCccccccC-------------CCCCEEEEeCCc
Q 007787 524 VEFEAIPKLESLIINPCAHLK--RLPEDLWRV-------------KSLTKLELWWPR 565 (589)
Q Consensus 524 ~~~~~l~~L~~L~L~~n~~l~--~lp~~l~~l-------------~~L~~L~l~~~~ 565 (589)
. .+++|++|++++|.+.+ .+|..+..+ ++|+.|++++|+
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 4 47889999999999887 678888777 889999999987
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=6.8e-18 Score=170.67 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=154.8
Q ss_pred cEEEEcCCCCc-cCCccc--CCCCCCCEEEeecCCccccchhhcCC-----CCccEEEecCCcccccc-ccccccccCce
Q 007787 323 KLLNLGTIVLE-EYPAGI--NLLLLLKYLKLNIPYLKHLPASLCNL-----LNLYTIDMPSSYVRCTP-DSIGKMHELRH 393 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~--~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~l~~lp-~~~~~L~~L~~ 393 (589)
+.|+|++|.++ .+|..+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++|.+..+| ..++++++|++
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 78999999998 788876 89999999999999999888888877 99999999999998886 77999999999
Q ss_pred eeecCcc------cCCcc--cccCCCCcccccccccCCC--CchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCC-
Q 007787 394 LNFRTIT------LPAHP--GKFCTSLENLNFISVLHPS--SCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLP- 462 (589)
Q Consensus 394 L~l~~~~------lp~~i--~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp- 462 (589)
|+++... +|..+ . .+++|++|++.++...+ ..+.. +. ..+++|+.|++++|. +. ..+
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~-~~---~~l~~L~~L~Ls~N~-----l~--~~~~ 245 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPL-KFPTLQVLALRNAGMETPSGVCSA-LA---AARVQLQGLDLSHNS-----LR--DAAG 245 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTT-SCTTCCEEECTTSCCCCHHHHHHH-HH---HTTCCCSEEECTTSC-----CC--SSCC
T ss_pred EECCCCCcCcchHHHHHHHhc-cCCCCCEEECCCCcCcchHHHHHH-HH---hcCCCCCEEECCCCc-----CC--cccc
Confidence 9999443 34344 6 89999999988776632 22223 22 267899999999974 22 222
Q ss_pred -C-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeec
Q 007787 463 -E-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPC 540 (589)
Q Consensus 463 -~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n 540 (589)
. +..+++|+.|+|++|.++ .+|..+. ++|++|++++|.+++. |. +..+++|++|++++|
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~---------------p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN---------------PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC---------------CC-TTTSCEEEEEECTTC
T ss_pred hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC---------------hh-HhhCCCCCEEeccCC
Confidence 2 667899999999999997 5666665 8999999999998654 22 667899999999999
Q ss_pred CCCC
Q 007787 541 AHLK 544 (589)
Q Consensus 541 ~~l~ 544 (589)
++.+
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9864
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.4e-17 Score=168.12 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=157.0
Q ss_pred cCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---CcccCCcccccCCCCccc
Q 007787 339 INLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TITLPAHPGKFCTSLENL 415 (589)
Q Consensus 339 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~lp~~i~~~l~~L~~L 415 (589)
+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|. +.++++|++|+++ ...+| .+. .+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~-~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIA-GLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGT-TCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhc-CCCCCCEE
Confidence 446889999999999999987 58999999999999999999987 9999999999999 23333 577 89999999
Q ss_pred ccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCCCCCCcccccccc
Q 007787 416 NFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQ 495 (589)
Q Consensus 416 ~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 495 (589)
++.++...+ ... +. .+++|+.|++++|. +. .++.+..+++|+.|++++|.+.+..+ ++.+++|+
T Consensus 113 ~l~~n~l~~--~~~-l~----~l~~L~~L~l~~n~-----l~--~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 176 (308)
T 1h6u_A 113 DLTSTQITD--VTP-LA----GLSNLQVLYLDLNQ-----IT--NISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176 (308)
T ss_dssp ECTTSCCCC--CGG-GT----TCTTCCEEECCSSC-----CC--CCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ECCCCCCCC--chh-hc----CCCCCCEEECCCCc-----cC--cCccccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence 988877633 334 55 78999999999974 22 33336788999999999999866443 89999999
Q ss_pred eeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 496 VLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 496 ~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
.|++++|.+.+.. .+..+++|++|++++|.+.+ ++. +..+++|+.|++++|+
T Consensus 177 ~L~l~~n~l~~~~----------------~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 177 TLKADDNKISDIS----------------PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp EEECCSSCCCCCG----------------GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEEEE
T ss_pred EEECCCCccCcCh----------------hhcCCCCCCEEEccCCccCc-ccc-ccCCCCCCEEEccCCe
Confidence 9999999886543 26789999999999999865 443 8899999999999987
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=182.71 Aligned_cols=230 Identities=16% Similarity=0.114 Sum_probs=158.3
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCccccc-cccccccccCceeeec--
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~-- 397 (589)
+.|++++|.+. ..|..+..+++|++|+|++|.+..+ |..+..+++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 67999999988 5577888999999999999999855 55788899999999999988776 6678899999999998
Q ss_pred -CcccC-CcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC--CCCC---CCcee--------cCC
Q 007787 398 -TITLP-AHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL--KIPS---QLSSI--------VLP 462 (589)
Q Consensus 398 -~~~lp-~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~--~lp~---~L~~L--------~lp 462 (589)
...++ ..+. .+++|++|++.++... . +. .+++|+.|++++|. .+|. +++.| .++
T Consensus 349 ~i~~~~~~~~~-~l~~L~~L~Ls~N~l~-----~-i~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 349 HIAIIQDQTFK-FLEKLQTLDLRDNALT-----T-IH----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417 (844)
T ss_dssp CCCCCCSSCSC-SCCCCCEEEEETCCSC-----C-CS----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSST
T ss_pred CCCccChhhhc-CCCCCCEEECCCCCCC-----c-cc----CCCCcchhccCCCCcccccccccccceeecccCccccCc
Confidence 23333 3466 7899999997766542 2 33 46678888888765 3332 34433 222
Q ss_pred C---CCCCCCccEEEEEeecCCCCCCC-CcccccccceeEEecCcccCcee----eEecCCCCCC----------Ccc-c
Q 007787 463 E---YQFPPSLIELSLANTELRDDPMP-KPKKLLHLQVLKLKKNSFIGRKL----ICRFGCFPSL----------KEW-I 523 (589)
Q Consensus 463 ~---~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~----~~~~~~f~~L----------~~l-~ 523 (589)
. +..+++|+.|+|++|.+++..+. .+..+++|+.|++++|.+.+... .....++++| ..+ |
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497 (844)
T ss_dssp THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence 2 34778888888888888655443 35567888888888887753321 0111223333 222 3
Q ss_pred cCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 524 VEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 524 ~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
..+..+++|+.|+|++|.+.+..|..+. ++|+.|++++|.
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ 537 (844)
T ss_dssp TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence 3456778888888888877553333333 778888888765
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=3.5e-17 Score=158.71 Aligned_cols=192 Identities=17% Similarity=0.129 Sum_probs=113.3
Q ss_pred cEEEEcCCCCccCCc-ccCCCCCCCEEEeecCC-ccccch-hhcCCCCccEEEecC-CccccccccccccccCceeeecC
Q 007787 323 KLLNLGTIVLEEYPA-GINLLLLLKYLKLNIPY-LKHLPA-SLCNLLNLYTIDMPS-SYVRCTPDSIGKMHELRHLNFRT 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~l~~lp~~~~~L~~L~~L~l~~ 398 (589)
+.|++++|.++.+|. .|+.+++|++|++++|. ++.+|. .+.++++|++|++++ |.+..+|.
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~--------------- 98 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP--------------- 98 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT---------------
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH---------------
Confidence 345555555553333 44455555555555553 444443 344555555555554 44444432
Q ss_pred cccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCC---eEEEeeCCCCCCCCceecCCC--CCCCCCcc-E
Q 007787 399 ITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLE---SLKLVNELKIPSQLSSIVLPE--YQFPPSLI-E 472 (589)
Q Consensus 399 ~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~---~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~-~ 472 (589)
..+. .+++|++|++.++...+ ... ++ .+++|+ .|++++|. .+. .+|. +..+++|+ .
T Consensus 99 ----~~f~-~l~~L~~L~l~~n~l~~--lp~-~~----~l~~L~~L~~L~l~~N~----~l~--~i~~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 99 ----DALK-ELPLLKFLGIFNTGLKM--FPD-LT----KVYSTDIFFILEITDNP----YMT--SIPVNAFQGLCNETLT 160 (239)
T ss_dssp ----TSEE-CCTTCCEEEEEEECCCS--CCC-CT----TCCBCCSEEEEEEESCT----TCC--EECTTTTTTTBSSEEE
T ss_pred ----HHhC-CCCCCCEEeCCCCCCcc--ccc-cc----cccccccccEEECCCCc----chh--hcCcccccchhcceeE
Confidence 1233 44555555544443321 111 22 334444 77777751 123 4555 78889999 9
Q ss_pred EEEEeecCCCCCCCCcccccccceeEEecCc-ccCceeeEecCCCCCCCccccCcccc-cccceeeEeecCCCCCCcccc
Q 007787 473 LSLANTELRDDPMPKPKKLLHLQVLKLKKNS-FIGRKLICRFGCFPSLKEWIVEFEAI-PKLESLIINPCAHLKRLPEDL 550 (589)
Q Consensus 473 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~f~~L~~l~~~~~~l-~~L~~L~L~~n~~l~~lp~~l 550 (589)
|++++|.++..++..+.. ++|+.|++++|. +.+.. +..+..+ ++|+.|++++|.+. .+|..
T Consensus 161 L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~--------------~~~~~~l~~~L~~L~l~~N~l~-~l~~~- 223 (239)
T 2xwt_C 161 LKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVID--------------KDAFGGVYSGPSLLDVSQTSVT-ALPSK- 223 (239)
T ss_dssp EECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEEC--------------TTTTTTCSBCCSEEECTTCCCC-CCCCT-
T ss_pred EEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCC--------------HHHhhccccCCcEEECCCCccc-cCChh-
Confidence 999999987544445555 899999998884 65322 2345667 89999999998875 56653
Q ss_pred ccCCCCCEEEEeCCc
Q 007787 551 WRVKSLTKLELWWPR 565 (589)
Q Consensus 551 ~~l~~L~~L~l~~~~ 565 (589)
.+++|+.|+++++.
T Consensus 224 -~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 -GLEHLKELIARNTW 237 (239)
T ss_dssp -TCTTCSEEECTTC-
T ss_pred -HhccCceeeccCcc
Confidence 68899999998876
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=3.3e-18 Score=173.41 Aligned_cols=207 Identities=16% Similarity=0.110 Sum_probs=163.0
Q ss_pred EEEEcCCCCccC-CcccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCccccccccccccccCceeeecCccc
Q 007787 324 LLNLGTIVLEEY-PAGINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITL 401 (589)
Q Consensus 324 ~L~L~~n~l~~~-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~l 401 (589)
+.+++.+.+... +..+..+++|++|+|++|.++.++ ..++++++|++|++++|.+..++. +..+++|++|+++...+
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc
Confidence 455666666533 334556789999999999999765 578999999999999999987765 89999999999995544
Q ss_pred CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeec
Q 007787 402 PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTE 479 (589)
Q Consensus 402 p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~ 479 (589)
. .+. ..++|++|++.++...+. +.. .+++|+.|++++|. +. .++. +..+++|+.|++++|.
T Consensus 93 ~-~l~-~~~~L~~L~l~~n~l~~~-~~~-------~~~~L~~L~l~~N~-----l~--~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 93 Q-ELL-VGPSIETLHAANNNISRV-SCS-------RGQGKKNIYLANNK-----IT--MLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp E-EEE-ECTTCCEEECCSSCCSEE-EEC-------CCSSCEEEECCSSC-----CC--SGGGBCTGGGSSEEEEECTTSC
T ss_pred c-ccc-CCCCcCEEECCCCccCCc-Ccc-------ccCCCCEEECCCCC-----CC--CccchhhhccCCCCEEECCCCC
Confidence 3 344 678999999877665322 222 56789999999974 22 4443 7789999999999999
Q ss_pred CCCCCCCCc-ccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCE
Q 007787 480 LRDDPMPKP-KKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTK 558 (589)
Q Consensus 480 l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~ 558 (589)
+.+..+..+ +.+++|++|++++|.+.+.. ....+++|++|++++|.+.+ +|..+..+++|+.
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 218 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVK----------------GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW 218 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEE----------------CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCcccc----------------cccccccCCEEECCCCcCCc-chhhhcccCcccE
Confidence 987777666 47899999999999986542 22348899999999999864 6667999999999
Q ss_pred EEEeCCc
Q 007787 559 LELWWPR 565 (589)
Q Consensus 559 L~l~~~~ 565 (589)
|++++|.
T Consensus 219 L~L~~N~ 225 (317)
T 3o53_A 219 ISLRNNK 225 (317)
T ss_dssp EECTTSC
T ss_pred EECcCCc
Confidence 9999987
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=9.4e-17 Score=175.24 Aligned_cols=220 Identities=15% Similarity=0.084 Sum_probs=153.2
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCcccccccc-ccccccCceeeecCc
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFRTI 399 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 399 (589)
+.|+|++|.++ ..|..|+++++|++|++++|.++.+| ..++++++|++|++++|.+..+|.. ++++++|++|+++..
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 67888888888 44667888888888888888888655 5678888888888888888777655 888888888888722
Q ss_pred -----ccCCcccccCCCCcccccccccCCCCch-hhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccE
Q 007787 400 -----TLPAHPGKFCTSLENLNFISVLHPSSCT-RDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIE 472 (589)
Q Consensus 400 -----~lp~~i~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~ 472 (589)
..|..++ .+++|++|++.++...+..+ .. ++ .+++|++|+++++. +.. ..|. +..+++|+.
T Consensus 109 ~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~-~~----~l~~L~~L~L~~n~-----l~~-~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 109 PYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRID-FA----GLTSLNELEIKALS-----LRN-YQSQSLKSIRDIHH 176 (549)
T ss_dssp CCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTT-TT----TCCEEEEEEEEETT-----CCE-ECTTTTTTCSEEEE
T ss_pred cccccchhhhhh-ccCCccEEECCCCccccccCHhh-hh----cccccCeeeccCCc-----ccc-cChhhhhccccCce
Confidence 3455677 88888888877766433443 34 65 67788888888763 221 2455 777888888
Q ss_pred EEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCC----cc
Q 007787 473 LSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRL----PE 548 (589)
Q Consensus 473 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~l----p~ 548 (589)
|++++|.+...+...++.+++|++|++++|.+.+..+.. ......+++|+.|++++|.+.+.. +.
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP-----------LPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC-----------CSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccc-----------cchhhhhhcccceeccccccchhHHHHHHH
Confidence 888888764332223456788888888888876542100 001234678888888888765432 23
Q ss_pred ccccCCCCCEEEEeCCc
Q 007787 549 DLWRVKSLTKLELWWPR 565 (589)
Q Consensus 549 ~l~~l~~L~~L~l~~~~ 565 (589)
.+..+++|+.+++++|.
T Consensus 246 ~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 246 LLRYILELSEVEFDDCT 262 (549)
T ss_dssp GGGGCTTCCEEEEESCE
T ss_pred Hhhhhcccccccccccc
Confidence 34567888888888886
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.3e-17 Score=178.99 Aligned_cols=197 Identities=17% Similarity=0.122 Sum_probs=158.3
Q ss_pred cCCcccCCC----CCCCEEEeecCCccccc-hhhcCCCCccEEEecCCccccccccccccccCceeeecCcccCCccccc
Q 007787 334 EYPAGINLL----LLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITLPAHPGKF 408 (589)
Q Consensus 334 ~~p~~~~~l----~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~i~~~ 408 (589)
.+|..+..+ ++|++|+|++|.++.+| ..++.+++|++|+|++|.+..+++ +..+++|++|+++...+. .+. .
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~-~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL-V 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEE-E
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCC-C
Confidence 445555444 48999999999999765 688999999999999999987765 999999999999955443 344 5
Q ss_pred CCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecC-CC-CCCCCCccEEEEEeecCCCCCCC
Q 007787 409 CTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVL-PE-YQFPPSLIELSLANTELRDDPMP 486 (589)
Q Consensus 409 l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~l-p~-~~~l~~L~~L~L~~n~l~~~~~~ 486 (589)
.++|++|++.++...+..+ . .+++|+.|++++|. +. .+ |. +..+++|+.|+|++|.+++.+|.
T Consensus 98 ~~~L~~L~L~~N~l~~~~~-~-------~l~~L~~L~L~~N~-----l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSC-S-------RGQGKKNIYLANNK-----IT--MLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp CTTCCEEECCSSCCCCEEE-C-------CCSSCEEEECCSSC-----CC--SGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCCcCEEECcCCcCCCCCc-c-------ccCCCCEEECCCCC-----CC--CCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 6899999987776533222 2 46789999999974 22 33 33 78899999999999999887787
Q ss_pred Ccc-cccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 487 KPK-KLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 487 ~l~-~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
.+. .+++|+.|+|++|.+.+.. ....+++|+.|+|++|.+.+ +|+.+..+++|+.|++++|.
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~----------------~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVK----------------GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEE----------------CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSC
T ss_pred HHhhhCCcccEEecCCCcccccc----------------ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCc
Confidence 776 8999999999999987643 23358999999999999865 55669999999999999987
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1.4e-16 Score=157.66 Aligned_cols=191 Identities=19% Similarity=0.180 Sum_probs=131.2
Q ss_pred EEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Cccc
Q 007787 325 LNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TITL 401 (589)
Q Consensus 325 L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~l 401 (589)
+++.++.+... .....+++|+.|++++|.++.++ .+..+++|++|++++|.+..++ .+.++++|++|+++ ...+
T Consensus 24 l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 24 ANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp HHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCC
T ss_pred HHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCcc
Confidence 34445554422 23557899999999999998876 4889999999999999888764 78888999999998 2333
Q ss_pred CCc-ccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEee
Q 007787 402 PAH-PGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANT 478 (589)
Q Consensus 402 p~~-i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n 478 (589)
|.. +. .+++|++|++.++...+..+.. ++ .+++|+.|++++|. +. .+|. +..+++|+.|++++|
T Consensus 101 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~----~l~~L~~L~L~~n~-----l~--~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 101 PNGVFD-KLTNLKELVLVENQLQSLPDGV-FD----KLTNLTYLNLAHNQ-----LQ--SLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CTTTTT-TCTTCCEEECTTSCCCCCCTTT-TT----TCTTCCEEECCSSC-----CC--CCCTTTTTTCTTCCEEECCSS
T ss_pred ChhHhc-CCcCCCEEECCCCcCCccCHHH-hc----cCCCCCEEECCCCc-----cC--ccCHHHhccCccCCEEECCCC
Confidence 433 45 7788888887666654444443 44 56677777777653 22 4444 566777777777777
Q ss_pred cCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCC
Q 007787 479 ELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKR 545 (589)
Q Consensus 479 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~ 545 (589)
.+++.++..++.+++|+.|++++|.+.+.. +..++.+++|+.|++++|++.+.
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVP--------------DGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCC--------------TTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCccCHHHhcCCccCCEEECCCCcCCccC--------------HHHHhCCcCCCEEEccCCCcccc
Confidence 776666666677777777777777665432 22355677777777777766543
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=2.2e-16 Score=156.13 Aligned_cols=169 Identities=27% Similarity=0.314 Sum_probs=120.0
Q ss_pred cEEEEcCCCCccCCc-ccCCCCCCCEEEeecCCccccchhh-cCCCCccEEEecCCcccccccc-ccccccCceeeecC-
Q 007787 323 KLLNLGTIVLEEYPA-GINLLLLLKYLKLNIPYLKHLPASL-CNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFRT- 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~- 398 (589)
+.|+|++|.++.+|. .|.++++|++|++++|.++.+|..+ .++++|++|++++|.+..+|.. +.++++|++|+++.
T Consensus 40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 779999999996664 8999999999999999999888765 7899999999999999888764 68899999999982
Q ss_pred --cccCC-cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEE
Q 007787 399 --ITLPA-HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIEL 473 (589)
Q Consensus 399 --~~lp~-~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L 473 (589)
..+|. .+. .+++|++|++.++...+..... ++ .+++|+.|++++|. +. .+|. +..+++|+.|
T Consensus 120 ~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~-~~----~l~~L~~L~L~~n~-----l~--~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 120 QLKSLPPRVFD-SLTKLTYLSLGYNELQSLPKGV-FD----KLTSLKELRLYNNQ-----LK--RVPEGAFDKLTELKTL 186 (270)
T ss_dssp CCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTT-TT----TCTTCCEEECCSSC-----CS--CCCTTTTTTCTTCCEE
T ss_pred ccCeeCHHHhC-cCcCCCEEECCCCcCCccCHhH-cc----CCcccceeEecCCc-----Cc--EeChhHhccCCCcCEE
Confidence 23332 345 6777777776665543322233 43 45666666666642 22 3333 5566666666
Q ss_pred EEEeecCCCCCCCCcccccccceeEEecCcc
Q 007787 474 SLANTELRDDPMPKPKKLLHLQVLKLKKNSF 504 (589)
Q Consensus 474 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 504 (589)
+|++|.+++.++..+..+++|+.|++++|.+
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 6666666555555566666666666666655
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=9e-16 Score=149.92 Aligned_cols=169 Identities=22% Similarity=0.242 Sum_probs=123.1
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcccccccc-ccccccCceeeec---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~--- 397 (589)
+.++++++.++.+|..+. ++|++|+|++|.+..++. .+.++++|++|++++|.+..++.. +.++++|++|+++
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 568999999999998776 689999999999996654 688999999999999988777554 7888899999888
Q ss_pred CcccCC-cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEE
Q 007787 398 TITLPA-HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELS 474 (589)
Q Consensus 398 ~~~lp~-~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~ 474 (589)
...+|. .+. .+++|++|++.++...+..+.. +. .+++|+.|++++|. ++ .+|. +..+++|+.|+
T Consensus 95 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~-~~----~l~~L~~L~Ls~N~-----l~--~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 95 LASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGV-FD----RLTKLKELRLNTNQ-----LQ--SIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp CCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTT-TT----TCTTCCEEECCSSC-----CC--CCCTTTTTTCTTCCEEE
T ss_pred ccccChhHhc-ccCCCCEEEcCCCcCCCcChhH-hc----cCCcccEEECcCCc-----CC--ccCHHHcCcCcCCCEEE
Confidence 233333 345 7778888876666554333333 44 56777777777753 22 4444 66677777777
Q ss_pred EEeecCCCCCCCCcccccccceeEEecCcccC
Q 007787 475 LANTELRDDPMPKPKKLLHLQVLKLKKNSFIG 506 (589)
Q Consensus 475 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 506 (589)
|++|.+.+.++..+..+++|+.|++++|.+..
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 77777766666667777777777777777644
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=157.02 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=64.8
Q ss_pred cEEEEcCCCCc-cCCccc--CCCCCCCEEEeecCCccc-cc----hhhcCCCCccEEEecCCcccccc-ccccccccCce
Q 007787 323 KLLNLGTIVLE-EYPAGI--NLLLLLKYLKLNIPYLKH-LP----ASLCNLLNLYTIDMPSSYVRCTP-DSIGKMHELRH 393 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~--~~l~~Lr~L~L~~~~i~~-lp----~~i~~L~~L~~L~L~~~~l~~lp-~~~~~L~~L~~ 393 (589)
+.|++++|.+. ..|..+ +.+++|++|+|++|.+.. .| ..+..+++|++|++++|.+..+| ..+.++++|++
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 173 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTS 173 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCE
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCE
Confidence 56888888877 566666 778888888888887773 22 23456778888888888776664 45677777777
Q ss_pred eeecCcc------cC--CcccccCCCCcccccccccC
Q 007787 394 LNFRTIT------LP--AHPGKFCTSLENLNFISVLH 422 (589)
Q Consensus 394 L~l~~~~------lp--~~i~~~l~~L~~L~l~~~~~ 422 (589)
|+++... ++ ..+. .+++|++|++.++..
T Consensus 174 L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 174 LDLSDNPGLGERGLMAALCPH-KFPAIQNLALRNTGM 209 (310)
T ss_dssp EECCSCTTCHHHHHHTTSCTT-SSCCCCSCBCCSSCC
T ss_pred EECCCCCCccchhhhHHHhhh-cCCCCCEEECCCCCC
Confidence 7777332 21 1224 566666666555544
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=3.1e-18 Score=178.54 Aligned_cols=226 Identities=18% Similarity=0.126 Sum_probs=162.0
Q ss_pred cEEEEcCCCCc-c----CCcccCCCCCCCEEEeecCCcc----ccchhh-------cCCCCccEEEecCCcccc-----c
Q 007787 323 KLLNLGTIVLE-E----YPAGINLLLLLKYLKLNIPYLK----HLPASL-------CNLLNLYTIDMPSSYVRC-----T 381 (589)
Q Consensus 323 r~L~L~~n~l~-~----~p~~~~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~~~l~~-----l 381 (589)
+.|+|++|.++ . ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.++. +
T Consensus 35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 114 (386)
T 2ca6_A 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114 (386)
T ss_dssp CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence 67999999887 2 4456788999999999997554 345444 688999999999998865 7
Q ss_pred cccccccccCceeeecCccc--------CCcccccC---------CCCcccccccccCCCCchh----hhhcCcccCCCC
Q 007787 382 PDSIGKMHELRHLNFRTITL--------PAHPGKFC---------TSLENLNFISVLHPSSCTR----DILGRLPSEFEL 440 (589)
Q Consensus 382 p~~~~~L~~L~~L~l~~~~l--------p~~i~~~l---------~~L~~L~l~~~~~~~~~~~----~~l~~L~~~l~~ 440 (589)
|..+..+++|++|+++...+ +..+. .+ ++|++|++.++........ . +. .+++
T Consensus 115 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~----~~~~ 188 (386)
T 2ca6_A 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ-ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT-FQ----SHRL 188 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHH-HHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH-HH----HCTT
T ss_pred HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHH-HHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH-HH----hCCC
Confidence 88888999999999984333 22233 34 8999999877766423333 3 44 6789
Q ss_pred CCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeecCC----CCCCCCcccccccceeEEecCcccCceeeEecCC
Q 007787 441 LESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTELR----DDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGC 515 (589)
Q Consensus 441 L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 515 (589)
|++|++++|+.-+..+.. -+|. +..+++|+.|+|++|.++ ..++..+..+++|++|+|++|.+.+....
T Consensus 189 L~~L~L~~n~l~~~g~~~-l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~----- 262 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEH-LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA----- 262 (386)
T ss_dssp CCEEECCSSCCCHHHHHH-HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH-----
T ss_pred cCEEECcCCCCCHhHHHH-HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH-----
Confidence 999999986411000000 1232 667889999999999985 44566788899999999998887654210
Q ss_pred CCCCCccccCc--ccccccceeeEeecCCCC----CCcccc-ccCCCCCEEEEeCCc
Q 007787 516 FPSLKEWIVEF--EAIPKLESLIINPCAHLK----RLPEDL-WRVKSLTKLELWWPR 565 (589)
Q Consensus 516 f~~L~~l~~~~--~~l~~L~~L~L~~n~~l~----~lp~~l-~~l~~L~~L~l~~~~ 565 (589)
.++..+ +.+++|++|+|++|.+.. .+|..+ .++++|+.|++++|+
T Consensus 263 -----~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 263 -----AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -----HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred -----HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 112233 347889999999998865 377766 568999999999886
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=4.2e-16 Score=171.26 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeeCC--CCC---CCCcee-----cCCC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCccc
Q 007787 437 EFELLESLKLVNEL--KIP---SQLSSI-----VLPE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFI 505 (589)
Q Consensus 437 ~l~~L~~L~l~~~~--~lp---~~L~~L-----~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 505 (589)
.+++|+.|++++|. .+| ++|+.| .+.. -..+++|+.|+|++|.+++ +| ..+++|+.|++++|.+.
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred cCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence 44778888888765 233 355555 1112 1234778888888888865 33 45688888888888876
Q ss_pred CceeeEecCCCCCC----------CccccCcccccccceeeEeecCCCCCCccccc
Q 007787 506 GRKLICRFGCFPSL----------KEWIVEFEAIPKLESLIINPCAHLKRLPEDLW 551 (589)
Q Consensus 506 ~~~~~~~~~~f~~L----------~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~ 551 (589)
.... .+++| ..+|..++.+++|+.|+|++|++.+..|..+.
T Consensus 255 ~lp~-----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 255 SLPM-----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCCC-----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCCc-----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 4331 33334 56788899999999999999999776665444
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=7.2e-16 Score=154.00 Aligned_cols=167 Identities=22% Similarity=0.108 Sum_probs=75.5
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---C
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---T 398 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~ 398 (589)
+.|+|++|.++ ..|..|..+++|++|+|++|.++.+|.. +.+++|++|++++|.+..+|..+..+++|++|+++ .
T Consensus 34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l 112 (290)
T 1p9a_G 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112 (290)
T ss_dssp CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcC
Confidence 34555555554 2233455555555555555555544432 44555555555555555555555555555555554 2
Q ss_pred cccC-CcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEE
Q 007787 399 ITLP-AHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSL 475 (589)
Q Consensus 399 ~~lp-~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L 475 (589)
..+| ..+. .+++|++|++.++......+.. +. .+++|+.|++++|. |+ .+|. +..+++|+.|+|
T Consensus 113 ~~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~-~~----~l~~L~~L~L~~N~-----l~--~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 113 TSLPLGALR-GLGELQELYLKGNELKTLPPGL-LT----PTPKLEKLSLANNN-----LT--ELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp CCCCSSTTT-TCTTCCEEECTTSCCCCCCTTT-TT----TCTTCCEEECTTSC-----CS--CCCTTTTTTCTTCCEEEC
T ss_pred cccCHHHHc-CCCCCCEEECCCCCCCccChhh-cc----cccCCCEEECCCCc-----CC--ccCHHHhcCcCCCCEEEC
Confidence 2222 2234 4555555554443332222222 22 34445555554432 22 3333 344455555555
Q ss_pred EeecCCCCCCCCcccccccceeEEecCcc
Q 007787 476 ANTELRDDPMPKPKKLLHLQVLKLKKNSF 504 (589)
Q Consensus 476 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 504 (589)
++|.++ .+|..+..+++|+.|+|++|.+
T Consensus 180 ~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 555543 2333334444555555544443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=5.6e-17 Score=163.77 Aligned_cols=214 Identities=14% Similarity=0.052 Sum_probs=158.8
Q ss_pred cEEEEcCCCCc--cCCc--ccCCCCCCCEEEeecCCcc-ccchhh--cCCCCccEEEecCCccccc-c----cccccccc
Q 007787 323 KLLNLGTIVLE--EYPA--GINLLLLLKYLKLNIPYLK-HLPASL--CNLLNLYTIDMPSSYVRCT-P----DSIGKMHE 390 (589)
Q Consensus 323 r~L~L~~n~l~--~~p~--~~~~l~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~l~~l-p----~~~~~L~~ 390 (589)
+.+.+.++.++ .+.. .+..+++|++|++++|.+. ..|..+ +.+++|++|++++|.+... | ..+..+++
T Consensus 67 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 146 (310)
T 4glp_A 67 RRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPG 146 (310)
T ss_dssp CEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSC
T ss_pred eEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccC
Confidence 56888888775 2211 1224577999999999998 667777 8899999999999988652 2 34567999
Q ss_pred Cceeeec---C-cccCCcccccCCCCcccccccccCCCC--chhh-hhcCcccCCCCCCeEEEeeCCCCCCCCcee-cCC
Q 007787 391 LRHLNFR---T-ITLPAHPGKFCTSLENLNFISVLHPSS--CTRD-ILGRLPSEFELLESLKLVNELKIPSQLSSI-VLP 462 (589)
Q Consensus 391 L~~L~l~---~-~~lp~~i~~~l~~L~~L~l~~~~~~~~--~~~~-~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L-~lp 462 (589)
|++|+++ . ...|..+. .+++|++|++.++...+. .+.. .++ .+++|++|++++|. ++.+ ..+
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~----~l~~L~~L~Ls~N~-----l~~l~~~~ 216 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPH----KFPAIQNLALRNTG-----METPTGVC 216 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTT----SSCCCCSCBCCSSC-----CCCHHHHH
T ss_pred CCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhh----cCCCCCEEECCCCC-----CCchHHHH
Confidence 9999999 2 33345677 899999999888765321 1111 023 68899999999974 2211 111
Q ss_pred C--CCCCCCccEEEEEeecCCCCCCCCcccc---cccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeE
Q 007787 463 E--YQFPPSLIELSLANTELRDDPMPKPKKL---LHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLII 537 (589)
Q Consensus 463 ~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L 537 (589)
. +..+++|++|+|++|.+.+..|+.++.+ ++|++|++++|.+... |..+ .++|+.|+|
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l---------------p~~~--~~~L~~L~L 279 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV---------------PKGL--PAKLRVLDL 279 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC---------------CSCC--CSCCSCEEC
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch---------------hhhh--cCCCCEEEC
Confidence 1 3567999999999999988877777766 7999999999998632 3333 379999999
Q ss_pred eecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 538 NPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 538 ~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
++|.+.+ +|. +..+++|+.|++++|+
T Consensus 280 s~N~l~~-~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 280 SSNRLNR-APQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCCCS-CCC-TTSCCCCSCEECSSTT
T ss_pred CCCcCCC-Cch-hhhCCCccEEECcCCC
Confidence 9999865 454 6789999999999998
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=7.9e-18 Score=171.86 Aligned_cols=216 Identities=18% Similarity=0.204 Sum_probs=127.5
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCcc-c-cchhhcCCCCccEEEecCCccc-cccccccccccCceeeecCc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLK-H-LPASLCNLLNLYTIDMPSSYVR-CTPDSIGKMHELRHLNFRTI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~-~-lp~~i~~L~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~~~ 399 (589)
+.|++++|.+...+..+..+++|++|++++|.+. . +|..+..+++|++|++++|.+. ..|..+.++++|++|+++..
T Consensus 73 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred eEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 5577777776655555666777777777777766 2 6666677777777777777654 45666777777777777632
Q ss_pred -c-----cCCcccccCCCCcccccccc-cCCCC-chhhhhcCcccCCC-CCCeEEEeeCCCCCCCCceecCCC-CCCCCC
Q 007787 400 -T-----LPAHPGKFCTSLENLNFISV-LHPSS-CTRDILGRLPSEFE-LLESLKLVNELKIPSQLSSIVLPE-YQFPPS 469 (589)
Q Consensus 400 -~-----lp~~i~~~l~~L~~L~l~~~-~~~~~-~~~~~l~~L~~~l~-~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~ 469 (589)
. +|..+. .+++|++|++.++ ...+. .+.. +. .++ +|++|+++++.. .+..-.+|. +..+++
T Consensus 153 ~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~-~~----~l~~~L~~L~l~~~~~---~~~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 153 SGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVA-VA----HVSETITQLNLSGYRK---NLQKSDLSTLVRRCPN 223 (336)
T ss_dssp BSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHH-HH----HSCTTCCEEECCSCGG---GSCHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHH-HH----hcccCCCEEEeCCCcc---cCCHHHHHHHHhhCCC
Confidence 1 333355 6777777776666 43322 2333 43 566 777777776410 000002344 556677
Q ss_pred ccEEEEEeec-CCCCCCCCcccccccceeEEecCc-ccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCc
Q 007787 470 LIELSLANTE-LRDDPMPKPKKLLHLQVLKLKKNS-FIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLP 547 (589)
Q Consensus 470 L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp 547 (589)
|+.|++++|. +++..+..++.+++|++|++++|. +.... ...++.+++|+.|++++| +..
T Consensus 224 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--------------~~~l~~~~~L~~L~l~~~-i~~--- 285 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET--------------LLELGEIPTLKTLQVFGI-VPD--- 285 (336)
T ss_dssp CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG--------------GGGGGGCTTCCEEECTTS-SCT---
T ss_pred CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH--------------HHHHhcCCCCCEEeccCc-cCH---
Confidence 7777777777 555566667777777777776664 21111 113456777777777777 211
Q ss_pred cccccC-CCCCEEEEeCCc
Q 007787 548 EDLWRV-KSLTKLELWWPR 565 (589)
Q Consensus 548 ~~l~~l-~~L~~L~l~~~~ 565 (589)
..+..+ .+|+.|++++|.
T Consensus 286 ~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 286 GTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TCHHHHHHHSTTSEESCCC
T ss_pred HHHHHHHhhCcceEEeccc
Confidence 122333 235555566554
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=1.2e-15 Score=149.01 Aligned_cols=172 Identities=18% Similarity=0.162 Sum_probs=98.5
Q ss_pred CCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccc-cccccccCceeeecCc---ccC-CcccccCCCCccccc
Q 007787 343 LLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFRTI---TLP-AHPGKFCTSLENLNF 417 (589)
Q Consensus 343 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~---~lp-~~i~~~l~~L~~L~l 417 (589)
...++++++++.++.+|..+. ++|+.|++++|.+..++. .+.++++|++|+++.. .++ ..+. .+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEEC
Confidence 457889999999999988765 689999999998877754 5777788888877722 222 2244 5555555554
Q ss_pred ccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCCCCCCccccccccee
Q 007787 418 ISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQVL 497 (589)
Q Consensus 418 ~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 497 (589)
.++...+..+.. +..+++|++|+|++|.+++.++..++.+++|+.|
T Consensus 91 ~~n~l~~~~~~~----------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 91 ANNQLASLPLGV----------------------------------FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp TTSCCCCCCTTT----------------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcccccChhH----------------------------------hcccCCCCEEEcCCCcCCCcChhHhccCCcccEE
Confidence 444332222222 4445555555555555544444445555555555
Q ss_pred EEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 498 KLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 498 ~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+|++|.+.+.. +..++.+++|++|+|++|.+.+..|..+..+++|+.|++++|+
T Consensus 137 ~Ls~N~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 137 RLNTNQLQSIP--------------AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSCCCCCC--------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ECcCCcCCccC--------------HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 55555543321 1123445555555555555543333345555555555555544
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1.2e-17 Score=170.45 Aligned_cols=214 Identities=16% Similarity=0.204 Sum_probs=147.2
Q ss_pred cEEEEcCCCCccCCcccCCC--CCCCEEEeecCCccccchhhcCCCCccEEEecCCcccc--ccccccccccCceeeecC
Q 007787 323 KLLNLGTIVLEEYPAGINLL--LLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRC--TPDSIGKMHELRHLNFRT 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--lp~~~~~L~~L~~L~l~~ 398 (589)
+.++++++.+. |..+..+ +++++|++++|.+...+..+.++++|++|++++|.+.. +|..+..+++|++|+++.
T Consensus 50 ~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 50 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred eeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 66888888765 4455566 78888888888888666667788888888888887643 677788888888888883
Q ss_pred c----ccCCcccccCCCCccccccccc-CCCC-chhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCC-Cc
Q 007787 399 I----TLPAHPGKFCTSLENLNFISVL-HPSS-CTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPP-SL 470 (589)
Q Consensus 399 ~----~lp~~i~~~l~~L~~L~l~~~~-~~~~-~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~-~L 470 (589)
. ..|..+. .+++|++|++.++. ..+. .+.. +. .+++|++|+++++.. +..-.++. +..++ +|
T Consensus 128 ~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~-~~----~~~~L~~L~l~~~~~----l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 128 LRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTL-LS----SCSRLDELNLSWCFD----FTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHH-HH----HCTTCCEEECCCCTT----CCHHHHHHHHHHSCTTC
T ss_pred cccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHH-Hh----cCCCCCEEcCCCCCC----cChHHHHHHHHhcccCC
Confidence 2 3445567 78888888877763 3322 3333 44 678888888887520 11001344 56677 88
Q ss_pred cEEEEEee--cCC-CCCCCCcccccccceeEEecCc-ccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCC
Q 007787 471 IELSLANT--ELR-DDPMPKPKKLLHLQVLKLKKNS-FIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRL 546 (589)
Q Consensus 471 ~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~l 546 (589)
++|++++| .++ +..+..++.+++|++|++++|. +++.. +..++.+++|++|++++|.. ..
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--------------~~~l~~l~~L~~L~l~~~~~--~~ 261 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--------------FQEFFQLNYLQHLSLSRCYD--II 261 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--------------GGGGGGCTTCCEEECTTCTT--CC
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH--------------HHHHhCCCCCCEeeCCCCCC--CC
Confidence 88888888 444 3345566778888888888777 43332 33566778888888888862 22
Q ss_pred cc---ccccCCCCCEEEEeCC
Q 007787 547 PE---DLWRVKSLTKLELWWP 564 (589)
Q Consensus 547 p~---~l~~l~~L~~L~l~~~ 564 (589)
+. .+..+++|++|++++|
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhcCCCCCEEeccCc
Confidence 33 4677888888888887
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1.9e-15 Score=146.36 Aligned_cols=183 Identities=19% Similarity=0.173 Sum_probs=135.2
Q ss_pred CccCCcccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCc-cccccc-cccccccCceeeecCcccCCccccc
Q 007787 332 LEEYPAGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSY-VRCTPD-SIGKMHELRHLNFRTITLPAHPGKF 408 (589)
Q Consensus 332 l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~-l~~lp~-~~~~L~~L~~L~l~~~~lp~~i~~~ 408 (589)
++.+|. +. .+|++|++++|.++.+|. .+.++++|++|++++|. ++.+|. .+.++++|++|+++
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~----------- 88 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR----------- 88 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE-----------
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC-----------
Confidence 667777 44 489999999999998876 67889999999999995 887765 45556666666553
Q ss_pred CCCCccccccc-ccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCcc---EEEEEee-cCCCC
Q 007787 409 CTSLENLNFIS-VLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLI---ELSLANT-ELRDD 483 (589)
Q Consensus 409 l~~L~~L~l~~-~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~---~L~L~~n-~l~~~ 483 (589)
+ +......+.. +. .+++|+.|++++|. ++ .+|.+..+++|+ .|++++| .+...
T Consensus 89 ----------~~n~l~~i~~~~-f~----~l~~L~~L~l~~n~-----l~--~lp~~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 89 ----------NTRNLTYIDPDA-LK----ELPLLKFLGIFNTG-----LK--MFPDLTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp ----------EETTCCEECTTS-EE----CCTTCCEEEEEEEC-----CC--SCCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred ----------CCCCeeEcCHHH-hC----CCCCCCEEeCCCCC-----Cc--cccccccccccccccEEECCCCcchhhc
Confidence 3 1111111223 55 68899999999974 22 555555666666 9999999 88777
Q ss_pred CCCCcccccccc-eeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecC-CCCCCccccccC-CCCCEEE
Q 007787 484 PMPKPKKLLHLQ-VLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCA-HLKRLPEDLWRV-KSLTKLE 560 (589)
Q Consensus 484 ~~~~l~~l~~L~-~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~-~l~~lp~~l~~l-~~L~~L~ 560 (589)
.+..++.+++|+ .|++++|.+... |......++|+.|++++|+ +....+..+..+ ++|+.|+
T Consensus 147 ~~~~~~~l~~L~~~L~l~~n~l~~i---------------~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 147 PVNAFQGLCNETLTLKLYNNGFTSV---------------QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp CTTTTTTTBSSEEEEECCSCCCCEE---------------CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred CcccccchhcceeEEEcCCCCCccc---------------CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 777899999999 999999988522 2232233799999999996 543334568889 9999999
Q ss_pred EeCCc
Q 007787 561 LWWPR 565 (589)
Q Consensus 561 l~~~~ 565 (589)
+++|+
T Consensus 212 l~~N~ 216 (239)
T 2xwt_C 212 VSQTS 216 (239)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 99987
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=5.9e-15 Score=151.54 Aligned_cols=213 Identities=15% Similarity=0.076 Sum_probs=133.6
Q ss_pred cEEEEcCCCCccCCc-ccCCCCCCCEEEeecCCcc-ccch-hhcCCCCccE-EEecCCcccccc-ccccccccCceeeec
Q 007787 323 KLLNLGTIVLEEYPA-GINLLLLLKYLKLNIPYLK-HLPA-SLCNLLNLYT-IDMPSSYVRCTP-DSIGKMHELRHLNFR 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~i~-~lp~-~i~~L~~L~~-L~L~~~~l~~lp-~~~~~L~~L~~L~l~ 397 (589)
+.|+|++|.|+.+|. +|.++++|++|+|++|.+. .+|. .+.++++|+. +.+++|.+..+| ..+..+++|++|+++
T Consensus 33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence 457777777776654 4666777777777777654 4443 3456666554 444555666663 346667777777776
Q ss_pred ---CcccCCc-ccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccE
Q 007787 398 ---TITLPAH-PGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIE 472 (589)
Q Consensus 398 ---~~~lp~~-i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~ 472 (589)
...+|.. +. ...++..|++.+++.....+...+.. ....++.|++++|+ ++ .+|. .....+|+.
T Consensus 113 ~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~---~~~~l~~L~L~~N~-----i~--~i~~~~f~~~~L~~ 181 (350)
T 4ay9_X 113 NTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVG---LSFESVILWLNKNG-----IQ--EIHNSAFNGTQLDE 181 (350)
T ss_dssp EECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTT---SBSSCEEEECCSSC-----CC--EECTTSSTTEEEEE
T ss_pred ccccccCCchhhc-ccchhhhhhhccccccccccccchhh---cchhhhhhcccccc-----cc--CCChhhccccchhH
Confidence 2233322 22 34445555544433322222210221 12356677777653 33 5666 445678999
Q ss_pred EEEEe-ecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccc
Q 007787 473 LSLAN-TELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLW 551 (589)
Q Consensus 473 L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~ 551 (589)
|++++ |.+...++..|+.+++|+.|++++|.++.. |. +.+.+|+.|.+.+|..++.+|. +.
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l---------------p~--~~~~~L~~L~~l~~~~l~~lP~-l~ 243 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL---------------PS--YGLENLKKLRARSTYNLKKLPT-LE 243 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC---------------CS--SSCTTCCEEECTTCTTCCCCCC-TT
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc---------------Ch--hhhccchHhhhccCCCcCcCCC-ch
Confidence 99975 566555666789999999999999988543 22 3466777888878888888985 88
Q ss_pred cCCCCCEEEEeCC
Q 007787 552 RVKSLTKLELWWP 564 (589)
Q Consensus 552 ~l~~L~~L~l~~~ 564 (589)
.+++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 8999999999753
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=5.7e-16 Score=154.85 Aligned_cols=182 Identities=17% Similarity=0.125 Sum_probs=117.9
Q ss_pred hhhHHHHHHhhCCCc--------cCcccEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecC
Q 007787 304 TRQLNQLWIAEGFIP--------ETARKLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPS 375 (589)
Q Consensus 304 ~~~L~~l~~~~~~i~--------~~ler~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 375 (589)
..+++...+...-+. ..+ +.|++++|.+..++. +..+++|++|++++|.++.++. ++++++|++|++++
T Consensus 23 l~~~~~~~l~~~~~~~~~~~~~l~~L-~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAVTQNELNSI-DQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHHTC-CEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcc-cEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC
Confidence 455666666555443 112 678888888887754 7888899999999988888776 88888899999998
Q ss_pred CccccccccccccccCceeeecCccc--CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCC
Q 007787 376 SYVRCTPDSIGKMHELRHLNFRTITL--PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIP 453 (589)
Q Consensus 376 ~~l~~lp~~~~~L~~L~~L~l~~~~l--p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp 453 (589)
|.+..+|. +..+++|++|+++...+ ...+. .+++|+.|++.++...+. .. +. .+++|+.|++++|.
T Consensus 100 n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~-~l~~L~~L~l~~n~l~~~--~~-l~----~l~~L~~L~L~~N~--- 167 (291)
T 1h6t_A 100 NKVKDLSS-LKDLKKLKSLSLEHNGISDINGLV-HLPQLESLYLGNNKITDI--TV-LS----RLTKLDTLSLEDNQ--- 167 (291)
T ss_dssp SCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGG-GCTTCCEEECCSSCCCCC--GG-GG----GCTTCSEEECCSSC---
T ss_pred CcCCCChh-hccCCCCCEEECCCCcCCCChhhc-CCCCCCEEEccCCcCCcc--hh-hc----cCCCCCEEEccCCc---
Confidence 88877654 77788888888872211 13455 677777777665554222 33 44 55666666666652
Q ss_pred CCCceecCCCCCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccC
Q 007787 454 SQLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIG 506 (589)
Q Consensus 454 ~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 506 (589)
+. .++.+..+++|+.|++++|.+++. +.+..+++|+.|++++|.+..
T Consensus 168 --l~--~~~~l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 168 --IS--DIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --CC--CCGGGTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred --cc--cchhhcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 11 222245566666666666666432 236666666666666666543
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=2.9e-15 Score=141.82 Aligned_cols=177 Identities=22% Similarity=0.238 Sum_probs=129.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchh-hcCCCCccEEEecCCcccccccc-ccccccCceeeecCcc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPAS-LCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFRTIT 400 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 400 (589)
+.++.+++.++.+|..+ .++|++|++++|.++.+|.. +.++++|++|++++|.+..+|.. +..+++|++|+++.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-- 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-- 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS--
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC--
Confidence 45788888888888765 46899999999999977764 57899999999999988877654 46677777777652
Q ss_pred cCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEee
Q 007787 401 LPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANT 478 (589)
Q Consensus 401 lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n 478 (589)
+...+..+.. ++ .+++|++|++++|. +. .+|. +..+++|+.|++++|
T Consensus 86 -------------------n~l~~~~~~~-~~----~l~~L~~L~L~~N~-----l~--~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 86 -------------------NQLQSLPNGV-FD----KLTQLKELALNTNQ-----LQ--SLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp -------------------SCCCCCCTTT-TT----TCTTCCEEECCSSC-----CC--CCCTTTTTTCTTCCEEECCSS
T ss_pred -------------------CcCCccCHhH-hc----CccCCCEEEcCCCc-----Cc--ccCHhHhccCCcCCEEECCCC
Confidence 2111111111 33 45566666666652 22 4444 678889999999999
Q ss_pred cCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCC
Q 007787 479 ELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKS 555 (589)
Q Consensus 479 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~ 555 (589)
.+++.++..++.+++|+.|++++|.+.+ .+++|+.|+++.|.+.+.+|..++.++.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------------------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDC---------------------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCC---------------------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccceeCHHHhccCCCccEEEecCCCeec---------------------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 9887777778889999999998887632 4678888999999888888887776654
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=1.5e-15 Score=164.93 Aligned_cols=182 Identities=20% Similarity=0.213 Sum_probs=125.3
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecC---c
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRT---I 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~---~ 399 (589)
+.|+|++|.++.+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|.++.+|. +.+ +|++|+++. .
T Consensus 62 ~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 62 SELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp SEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCS
T ss_pred cEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCC
Confidence 679999999999988774 89999999999999998 568999999999999988988 665 899999983 3
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeec
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTE 479 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~ 479 (589)
.+|. .+++|+.|++.+|...+ +. ..+++|+.|++++|. |. .+|.+. ++|+.|+|++|.
T Consensus 134 ~lp~----~l~~L~~L~Ls~N~l~~------lp---~~l~~L~~L~Ls~N~-----L~--~lp~l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 134 MLPE----LPALLEYINADNNQLTM------LP---ELPTSLEVLSVRNNQ-----LT--FLPELP--ESLEALDVSTNL 191 (571)
T ss_dssp CCCC----CCTTCCEEECCSSCCSC------CC---CCCTTCCEEECCSSC-----CS--CCCCCC--TTCCEEECCSSC
T ss_pred CCCC----cCccccEEeCCCCccCc------CC---CcCCCcCEEECCCCC-----CC--Ccchhh--CCCCEEECcCCC
Confidence 3444 46778888766554321 11 135677777777753 22 344422 677777777777
Q ss_pred CCCCCCCCccccccc-------ceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCcccccc
Q 007787 480 LRDDPMPKPKKLLHL-------QVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWR 552 (589)
Q Consensus 480 l~~~~~~~l~~l~~L-------~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~ 552 (589)
++ .+|. +.. +| +.|+|++|.++. +|..+..+++|+.|+|++|++.+.+|..+..
T Consensus 192 L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~---------------lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 192 LE-SLPA-VPV--RNHHSEETEIFFRCRENRITH---------------IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CS-SCCC-CC----------CCEEEECCSSCCCC---------------CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CC-chhh-HHH--hhhcccccceEEecCCCccee---------------cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 75 3333 433 55 777777776632 3445556777777777777776666655544
Q ss_pred C
Q 007787 553 V 553 (589)
Q Consensus 553 l 553 (589)
+
T Consensus 253 l 253 (571)
T 3cvr_A 253 Q 253 (571)
T ss_dssp H
T ss_pred h
Confidence 3
No 93
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=9.8e-15 Score=155.17 Aligned_cols=154 Identities=20% Similarity=0.171 Sum_probs=81.7
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCc---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTI--- 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~--- 399 (589)
+.|++++|.++.+|.. +++|++|++++|.++.+|.. .++|++|++++|.+..+| .++++++|++|+++..
T Consensus 94 ~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 94 ESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp SEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred CEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc
Confidence 4566666666555532 25666666666666555431 156777777777666666 4677777777777622
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeec
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTE 479 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~ 479 (589)
.+|. ...+|++|++.++...+ .+ . ++ .+++|+.|++++|.. . .+|. ..++|+.|++++|.
T Consensus 167 ~lp~----~~~~L~~L~L~~n~l~~-l~-~-~~----~l~~L~~L~l~~N~l-----~--~l~~--~~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 167 KLPD----LPPSLEFIAAGNNQLEE-LP-E-LQ----NLPFLTAIYADNNSL-----K--KLPD--LPLSLESIVAGNNI 226 (454)
T ss_dssp CCCC----CCTTCCEEECCSSCCSS-CC-C-CT----TCTTCCEEECCSSCC-----S--SCCC--CCTTCCEEECCSSC
T ss_pred ccCC----CcccccEEECcCCcCCc-Cc-c-cc----CCCCCCEEECCCCcC-----C--cCCC--CcCcccEEECcCCc
Confidence 2332 33466777765554432 22 4 54 567777777776531 1 2222 11244444444444
Q ss_pred CCCCCCCCcccccccceeEEecCccc
Q 007787 480 LRDDPMPKPKKLLHLQVLKLKKNSFI 505 (589)
Q Consensus 480 l~~~~~~~l~~l~~L~~L~L~~n~~~ 505 (589)
+. .+| .++.+++|++|++++|.+.
T Consensus 227 l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 227 LE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred CC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 43 222 2444444444444444443
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=3.3e-15 Score=163.82 Aligned_cols=184 Identities=17% Similarity=0.149 Sum_probs=146.1
Q ss_pred chhhHHHHHHhhCCCc--------cCcccEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEec
Q 007787 303 STRQLNQLWIAEGFIP--------ETARKLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMP 374 (589)
Q Consensus 303 ~~~~L~~l~~~~~~i~--------~~ler~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 374 (589)
....++.+.+....+. ..+ +.|++++|.+..+| .+..|++|++|+|++|.+..+|+ +..+++|+.|+|+
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~~~~L~~L-~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVTQNELNSI-DQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEECHHHHTTC-CCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHHhccCCCcccccchhcCCCC-CEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 3456667766665554 122 67999999999877 58999999999999999998887 8999999999999
Q ss_pred CCccccccccccccccCceeeec---CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCC
Q 007787 375 SSYVRCTPDSIGKMHELRHLNFR---TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELK 451 (589)
Q Consensus 375 ~~~l~~lp~~~~~L~~L~~L~l~---~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~ 451 (589)
+|.+..+| .+..+++|++|+|+ ...+ +.+. .+++|+.|++.++...+. .. +. .+++|+.|+|++|.
T Consensus 96 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~-~l~~L~~L~Ls~N~l~~l--~~-l~----~l~~L~~L~Ls~N~- 164 (605)
T 1m9s_A 96 ENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLV-HLPQLESLYLGNNKITDI--TV-LS----RLTKLDTLSLEDNQ- 164 (605)
T ss_dssp SSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGG-GCTTCSEEECCSSCCCCC--GG-GG----SCTTCSEEECCSSC-
T ss_pred CCCCCCCh-hhccCCCCCEEEecCCCCCCC-cccc-CCCccCEEECCCCccCCc--hh-hc----ccCCCCEEECcCCc-
Confidence 99998876 78899999999999 2333 3577 899999999887766433 45 65 78899999999873
Q ss_pred CCCCCceecCCCCCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCce
Q 007787 452 IPSQLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRK 508 (589)
Q Consensus 452 lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 508 (589)
+. .++.+..+++|+.|+|++|.+.+. +.++.+++|+.|+|++|.+.+..
T Consensus 165 ----l~--~~~~l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 165 ----IS--DIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ----CC--CCGGGTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred ----CC--CchhhccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 22 222267889999999999998653 46889999999999998886643
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=1.5e-15 Score=166.57 Aligned_cols=184 Identities=19% Similarity=0.131 Sum_probs=147.7
Q ss_pred EEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Cccc
Q 007787 325 LNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TITL 401 (589)
Q Consensus 325 L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~l 401 (589)
+.+..+.+..++ .+..+++|++|++++|.+..+| .+..|++|+.|+|++|.+..+|. +..+++|++|+|+ ...+
T Consensus 26 l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 26 DNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp HHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred HhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC
Confidence 445555555332 2567899999999999999987 58999999999999999998876 8999999999999 2333
Q ss_pred CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCC
Q 007787 402 PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELR 481 (589)
Q Consensus 402 p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~ 481 (589)
| .+. .+++|+.|++.++...+ +.. +. .+++|+.|+|++|. +. .++.+..+++|+.|+|++|.+.
T Consensus 103 ~-~l~-~l~~L~~L~Ls~N~l~~--l~~-l~----~l~~L~~L~Ls~N~-----l~--~l~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 103 S-SLK-DLKKLKSLSLEHNGISD--ING-LV----HLPQLESLYLGNNK-----IT--DITVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp T-TST-TCTTCCEEECTTSCCCC--CGG-GG----GCTTCSEEECCSSC-----CC--CCGGGGSCTTCSEEECCSSCCC
T ss_pred h-hhc-cCCCCCEEEecCCCCCC--Ccc-cc----CCCccCEEECCCCc-----cC--CchhhcccCCCCEEECcCCcCC
Confidence 3 678 89999999988877643 345 65 78999999999873 22 3322788999999999999997
Q ss_pred CCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCC
Q 007787 482 DDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKR 545 (589)
Q Consensus 482 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~ 545 (589)
+..+ ++.+++|+.|+|++|.+.+.. .+..+++|+.|+|++|++...
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l~----------------~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDLR----------------ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBCG----------------GGTTCTTCSEEECCSEEEECC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCCh----------------HHccCCCCCEEEccCCcCcCC
Confidence 6655 899999999999999886532 466789999999999988653
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.4e-14 Score=144.71 Aligned_cols=182 Identities=19% Similarity=0.130 Sum_probs=144.9
Q ss_pred EEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---CcccC
Q 007787 326 NLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TITLP 402 (589)
Q Consensus 326 ~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~lp 402 (589)
.+..+.++.+. .+..+++|++|++++|.+..+|. +..+++|++|++++|.+..++. +.++++|++|+++ ...+|
T Consensus 30 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 30 NLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred HhcCCCccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 44455554321 24578999999999999998874 8899999999999999998877 9999999999999 23333
Q ss_pred CcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCC
Q 007787 403 AHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRD 482 (589)
Q Consensus 403 ~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~ 482 (589)
.+. .+++|++|++.++...+ +.. +. .+++|+.|++++|. +. .++.+..+++|+.|++++|.+.+
T Consensus 107 -~l~-~l~~L~~L~L~~n~i~~--~~~-l~----~l~~L~~L~l~~n~-----l~--~~~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 107 -SLK-DLKKLKSLSLEHNGISD--ING-LV----HLPQLESLYLGNNK-----IT--DITVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp -GGT-TCTTCCEEECTTSCCCC--CGG-GG----GCTTCCEEECCSSC-----CC--CCGGGGGCTTCSEEECCSSCCCC
T ss_pred -hhc-cCCCCCEEECCCCcCCC--Chh-hc----CCCCCCEEEccCCc-----CC--cchhhccCCCCCEEEccCCcccc
Confidence 477 89999999988776633 245 65 78999999999874 22 33227788999999999999976
Q ss_pred CCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCC
Q 007787 483 DPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLK 544 (589)
Q Consensus 483 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~ 544 (589)
..+ ++.+++|+.|++++|.+.+. + .+..+++|+.|++++|++..
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l---------------~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDL---------------R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC---------------G-GGTTCTTCSEEEEEEEEEEC
T ss_pred chh--hcCCCccCEEECCCCcCCCC---------------h-hhccCCCCCEEECcCCcccC
Confidence 554 89999999999999988653 2 36779999999999999765
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.5e-14 Score=135.72 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=71.9
Q ss_pred CCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecC----cccCCcccccCCCCcccc
Q 007787 341 LLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRT----ITLPAHPGKFCTSLENLN 416 (589)
Q Consensus 341 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~----~~lp~~i~~~l~~L~~L~ 416 (589)
.+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|+++. ...|..+. .+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhc-CCCCCCEEE
Confidence 3445555555555555444 3445555555555555443332 344444555554441 11233444 555556665
Q ss_pred cccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCCCCCCcccccccce
Q 007787 417 FISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQV 496 (589)
Q Consensus 417 l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 496 (589)
+.++...+..+.. ++ .+++|+.|++++|.. +. .+|.+..+++|+.|++++|.+.+. + .+..+++|+.
T Consensus 119 Ls~n~i~~~~~~~-l~----~l~~L~~L~L~~n~~----i~--~~~~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~ 185 (197)
T 4ezg_A 119 ISHSAHDDSILTK-IN----TLPKVNSIDLSYNGA----IT--DIMPLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQ 185 (197)
T ss_dssp CCSSBCBGGGHHH-HT----TCSSCCEEECCSCTB----CC--CCGGGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCE
T ss_pred ecCCccCcHhHHH-Hh----hCCCCCEEEccCCCC----cc--ccHhhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCE
Confidence 5554443334444 54 455555555555420 01 222244556666666666665432 2 5566666666
Q ss_pred eEEecCccc
Q 007787 497 LKLKKNSFI 505 (589)
Q Consensus 497 L~L~~n~~~ 505 (589)
|++++|.+.
T Consensus 186 L~l~~N~i~ 194 (197)
T 4ezg_A 186 LYAFSQTIG 194 (197)
T ss_dssp EEECBC---
T ss_pred EEeeCcccC
Confidence 666666553
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=3.3e-14 Score=154.38 Aligned_cols=180 Identities=21% Similarity=0.166 Sum_probs=139.0
Q ss_pred CCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---CcccCCcccccCCCCccccccc
Q 007787 343 LLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TITLPAHPGKFCTSLENLNFIS 419 (589)
Q Consensus 343 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~lp~~i~~~l~~L~~L~l~~ 419 (589)
.+|++|+|++|.++.+|..+. ++|++|+|++|.++.+| ..+++|++|+++ ...+|. +. . +|++|++.+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~-~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LP-A--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CC-T--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hh-c--CCCEEECCC
Confidence 389999999999999998774 89999999999999999 458999999999 345676 66 4 999999877
Q ss_pred ccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCCCCCCcccccccceeEE
Q 007787 420 VLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKL 499 (589)
Q Consensus 420 ~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 499 (589)
|...+ .+ ..+++|+.|++++|. ++ .+|. .+++|+.|+|++|.+++ +|. ++ ++|+.|+|
T Consensus 130 N~l~~-lp--------~~l~~L~~L~Ls~N~-----l~--~lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 130 NQLTM-LP--------ELPALLEYINADNNQ-----LT--MLPE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp SCCSC-CC--------CCCTTCCEEECCSSC-----CS--CCCC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred CcCCC-CC--------CcCccccEEeCCCCc-----cC--cCCC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 66532 11 246799999999974 23 4554 56899999999999977 555 66 99999999
Q ss_pred ecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 500 KKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 500 ~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
++|.++.... |+. .-....+.|+.|+|++|.+. .+|..+..+++|+.|++++|+
T Consensus 188 s~N~L~~lp~------~~~-----~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 188 STNLLESLPA------VPV-----RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CSSCCSSCCC------CC-------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred cCCCCCchhh------HHH-----hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 9999863320 110 00112234499999999875 689888889999999999998
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=1.8e-16 Score=165.21 Aligned_cols=215 Identities=16% Similarity=0.144 Sum_probs=158.0
Q ss_pred cCCcccCCCCCCCEEEeecCCccc-----cchhhcCCCCccEEEecCCccc----cccccc-------cccccCceeeec
Q 007787 334 EYPAGINLLLLLKYLKLNIPYLKH-----LPASLCNLLNLYTIDMPSSYVR----CTPDSI-------GKMHELRHLNFR 397 (589)
Q Consensus 334 ~~p~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~----~lp~~~-------~~L~~L~~L~l~ 397 (589)
.++..+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 567788889999999999999883 4455778999999999998554 345544 688999999999
Q ss_pred Ccc--------cCCcccccCCCCcccccccccCCCCchhhhhcCcccCC---------CCCCeEEEeeCCCCCCCCceec
Q 007787 398 TIT--------LPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEF---------ELLESLKLVNELKIPSQLSSIV 460 (589)
Q Consensus 398 ~~~--------lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l---------~~L~~L~l~~~~~lp~~L~~L~ 460 (589)
... +|..+. .+++|++|++.+|......+.. +...-..+ ++|++|++++|.. ..-.
T Consensus 103 ~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l-----~~~~ 175 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAK-IARALQELAVNKKAKNAPPLRSIICGRNRL-----ENGS 175 (386)
T ss_dssp SCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHH-HHHHHHHHHHHHHHHTCCCCCEEECCSSCC-----TGGG
T ss_pred CCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHH-HHHHHHHHhhhhhcccCCCCcEEECCCCCC-----CcHH
Confidence 332 455677 8999999998887763332333 33100133 8999999998731 1002
Q ss_pred CC---C-CCCCCCccEEEEEeecCCC-----CCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccc
Q 007787 461 LP---E-YQFPPSLIELSLANTELRD-----DPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPK 531 (589)
Q Consensus 461 lp---~-~~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~ 531 (589)
+| . +..+++|++|+|++|.+.. ..+..+..+++|++|+|++|.++.... ..+|..+..+++
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----------~~l~~~l~~~~~ 245 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----------SALAIALKSWPN 245 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----------HHHHHHGGGCTT
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----------HHHHHHHccCCC
Confidence 22 3 5578899999999999852 234478899999999999998853210 123456778999
Q ss_pred cceeeEeecCCCCC----Ccccc--ccCCCCCEEEEeCCc
Q 007787 532 LESLIINPCAHLKR----LPEDL--WRVKSLTKLELWWPR 565 (589)
Q Consensus 532 L~~L~L~~n~~l~~----lp~~l--~~l~~L~~L~l~~~~ 565 (589)
|++|+|++|.+... +|..+ +.+++|+.|++++|.
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 99999999998654 45566 348999999999997
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=3.5e-16 Score=161.50 Aligned_cols=226 Identities=14% Similarity=0.110 Sum_probs=143.7
Q ss_pred cEEEEcCCCCccCC-----cccCCCC-CCCEEEeecCCcccc-chhhcCC-----CCccEEEecCCcccccc-cc----c
Q 007787 323 KLLNLGTIVLEEYP-----AGINLLL-LLKYLKLNIPYLKHL-PASLCNL-----LNLYTIDMPSSYVRCTP-DS----I 385 (589)
Q Consensus 323 r~L~L~~n~l~~~p-----~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~l~~lp-~~----~ 385 (589)
+.|+|++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|++++|.++..+ .. +
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 67888888888554 5677787 888888888888743 4455554 88888888888776543 32 3
Q ss_pred ccc-ccCceeeecCcccCC----c----cccc-CCCCcccccccccCCCCchhhhhcCcccCCC-CCCeEEEeeCCCCCC
Q 007787 386 GKM-HELRHLNFRTITLPA----H----PGKF-CTSLENLNFISVLHPSSCTRDILGRLPSEFE-LLESLKLVNELKIPS 454 (589)
Q Consensus 386 ~~L-~~L~~L~l~~~~lp~----~----i~~~-l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~-~L~~L~l~~~~~lp~ 454 (589)
..+ ++|++|+++...+.. . +. . .++|++|++.++......+.. +...-..++ +|++|++++|.
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~---- 178 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFS-NLPASITSLNLRGNDLGIKSSDE-LIQILAAIPANVNSLNLRGNN---- 178 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHT-TSCTTCCEEECTTSCGGGSCHHH-HHHHHHTSCTTCCEEECTTSC----
T ss_pred HhCCCCccEEECcCCcCCcHHHHHHHHHHH-hCCCceeEEEccCCcCCHHHHHH-HHHHHhcCCccccEeeecCCC----
Confidence 344 788888888333321 1 22 2 358888887776654333333 211001343 88888888863
Q ss_pred CCcee---cCCC-CCCC-CCccEEEEEeecCCCCC----CCCccc-ccccceeEEecCcccCceeeEecCCCCCCCcccc
Q 007787 455 QLSSI---VLPE-YQFP-PSLIELSLANTELRDDP----MPKPKK-LLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIV 524 (589)
Q Consensus 455 ~L~~L---~lp~-~~~l-~~L~~L~L~~n~l~~~~----~~~l~~-l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~ 524 (589)
+... .+.. +..+ ++|+.|+|++|.+.... +..+.. .++|++|+|++|.+.+... +.+..
T Consensus 179 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----------~~l~~ 247 (362)
T 3goz_A 179 -LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL----------ENLKL 247 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH----------HHHHH
T ss_pred -CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH----------HHHHH
Confidence 1100 1111 2334 58999999999886532 334444 3589999998888765431 11122
Q ss_pred CcccccccceeeEeecCCCCC-------CccccccCCCCCEEEEeCCc
Q 007787 525 EFEAIPKLESLIINPCAHLKR-------LPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 525 ~~~~l~~L~~L~L~~n~~l~~-------lp~~l~~l~~L~~L~l~~~~ 565 (589)
.+..+++|+.|++++|.+... ++..+..+++|+.|++++|+
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 345678899999999984332 33356678889999999986
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=6.6e-14 Score=133.77 Aligned_cols=145 Identities=21% Similarity=0.284 Sum_probs=109.0
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCccccc-cccccccccCceeeecC--
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFRT-- 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~-- 398 (589)
+.++++++.++.+|..+. ++|+.|++++|.|+.+|. .+..+++|++|+|++|.+..+ |..|.++++|++|+++.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 568999999999998775 789999999999998776 678899999999999988777 66677777777777762
Q ss_pred -cccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCC-C-CCCCCCccEEEE
Q 007787 399 -ITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLP-E-YQFPPSLIELSL 475 (589)
Q Consensus 399 -~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp-~-~~~l~~L~~L~L 475 (589)
..+|..+ +. .+++|+.|++++|. ++ .++ . +..+++|+.|+|
T Consensus 92 l~~l~~~~-------------------------f~----~l~~L~~L~L~~N~-----l~--~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 92 ITELPKSL-------------------------FE----GLFSLQLLLLNANK-----IN--CLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp CCCCCTTT-------------------------TT----TCTTCCEEECCSSC-----CC--CCCTTTTTTCTTCCEEEC
T ss_pred CCccCHhH-------------------------cc----CCCCCCEEECCCCC-----CC--EeCHHHcCCCCCCCEEEC
Confidence 2223221 22 34555555555542 12 333 3 777888888888
Q ss_pred EeecCCCCCCCCcccccccceeEEecCccc
Q 007787 476 ANTELRDDPMPKPKKLLHLQVLKLKKNSFI 505 (589)
Q Consensus 476 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 505 (589)
++|.+++..+..+..+++|+.|++++|.+.
T Consensus 136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888888777778888889999999888774
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=3.3e-14 Score=146.64 Aligned_cols=168 Identities=21% Similarity=0.209 Sum_probs=134.4
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchh-hc-CCCCccEEEecCCccccccc-cccccccCceeeec--
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPAS-LC-NLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~-- 397 (589)
++++++++.++.+|..+. ..+++|+|++|.|+.+|.. +. ++++|++|+|++|.+..++. .|.++++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578999999999998765 4689999999999988765 44 89999999999999988864 58999999999999
Q ss_pred -CcccCC-cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--C---CCCCCc
Q 007787 398 -TITLPA-HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--Y---QFPPSL 470 (589)
Q Consensus 398 -~~~lp~-~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~---~~l~~L 470 (589)
...+|. .+. .+++|++|++.++......+.. +. .+++|+.|+|++|. |. .+|. + ..+++|
T Consensus 99 ~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~-~~----~l~~L~~L~L~~N~-----l~--~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 99 HLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNA-FE----DMAQLQKLYLSQNQ-----IS--RFPVELIKDGNKLPKL 165 (361)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTT-TT----TCTTCCEEECCSSC-----CC--SCCGGGTC----CTTC
T ss_pred cCCcCCHHHhC-CCcCCCEEECCCCcccEECHHH-hC----CcccCCEEECCCCc-----CC--eeCHHHhcCcccCCcC
Confidence 334444 466 8999999998877765544555 76 78899999999874 33 5665 4 578999
Q ss_pred cEEEEEeecCCCCCCCCcccccc--cceeEEecCccc
Q 007787 471 IELSLANTELRDDPMPKPKKLLH--LQVLKLKKNSFI 505 (589)
Q Consensus 471 ~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~~~ 505 (589)
+.|+|++|.+...++..+..++. |+.|+|++|.+.
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999999998777777888887 488999998764
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=1.4e-15 Score=157.03 Aligned_cols=178 Identities=18% Similarity=0.187 Sum_probs=77.1
Q ss_pred cEEEEcCCCCc-cCCcccCCC-----CCCCEEEeecCCccccc-hh----hcCC-CCccEEEecCCcccccccc-----c
Q 007787 323 KLLNLGTIVLE-EYPAGINLL-----LLLKYLKLNIPYLKHLP-AS----LCNL-LNLYTIDMPSSYVRCTPDS-----I 385 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l-----~~Lr~L~L~~~~i~~lp-~~----i~~L-~~L~~L~L~~~~l~~lp~~-----~ 385 (589)
+.|+|++|.++ ..+..++.+ ++|++|+|++|.++..+ .. +..+ ++|++|++++|.++..+.. +
T Consensus 54 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 133 (362)
T 3goz_A 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH
Confidence 44566666555 223334332 55666666666555322 22 2233 5566666666655444321 2
Q ss_pred cc-cccCceeeecCccc--------CCcccccCC-CCcccccccccCCCCchhhhhcCcccCC-CCCCeEEEeeCCCCCC
Q 007787 386 GK-MHELRHLNFRTITL--------PAHPGKFCT-SLENLNFISVLHPSSCTRDILGRLPSEF-ELLESLKLVNELKIPS 454 (589)
Q Consensus 386 ~~-L~~L~~L~l~~~~l--------p~~i~~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~~l-~~L~~L~l~~~~~lp~ 454 (589)
.. .++|++|+++...+ +..+. .++ +|++|++.++...+..+.. +...-..+ ++|++|++++|..-..
T Consensus 134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 134 SNLPASITSLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASKNCAE-LAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp TTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHH-HHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HhCCCceeEEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchhhHHH-HHHHHHhCCCCCCEEECCCCCCChh
Confidence 22 13566666652221 12222 333 5666655555443333322 22100123 3566666655421000
Q ss_pred CCceecCCC-CCC-CCCccEEEEEeecCCCCCC----CCcccccccceeEEecCcc
Q 007787 455 QLSSIVLPE-YQF-PPSLIELSLANTELRDDPM----PKPKKLLHLQVLKLKKNSF 504 (589)
Q Consensus 455 ~L~~L~lp~-~~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~~ 504 (589)
... .++. +.. .++|+.|+|++|.+....+ ..+..+++|+.|++++|.+
T Consensus 212 ~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 212 SYA--ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp CHH--HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHH--HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence 000 1222 222 2356666666665544332 1234445566666655553
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=1.7e-13 Score=140.67 Aligned_cols=210 Identities=12% Similarity=0.079 Sum_probs=151.9
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcc-ccccc-cccccccCceeee-c-
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYV-RCTPD-SIGKMHELRHLNF-R- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l-~~lp~-~~~~L~~L~~L~l-~- 397 (589)
++++-+++.++.+|..+. +++++|+|++|+|+.+|. ++.++++|++|+|++|.+ +.+|. .|.++++|+.+.. +
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 668889999999998773 689999999999999986 578999999999999976 55665 4788988876544 3
Q ss_pred --Cccc-CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCC-CCcc
Q 007787 398 --TITL-PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFP-PSLI 471 (589)
Q Consensus 398 --~~~l-p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l-~~L~ 471 (589)
...+ |..+. .+++|++|++.++......... +. ...++..|++..+. .+. .+|. +..+ ..++
T Consensus 90 N~l~~l~~~~f~-~l~~L~~L~l~~n~l~~~~~~~-~~----~~~~l~~l~l~~~~----~i~--~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 90 NNLLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVH-KI----HSLQKVLLDIQDNI----NIH--TIERNSFVGLSFESV 157 (350)
T ss_dssp TTCCEECTTSBC-CCTTCCEEEEEEECCSSCCCCT-TC----CBSSCEEEEEESCT----TCC--EECTTSSTTSBSSCE
T ss_pred CcccccCchhhh-hccccccccccccccccCCchh-hc----ccchhhhhhhcccc----ccc--cccccchhhcchhhh
Confidence 3455 44567 8999999998777653322222 22 45567788887632 233 4554 5554 4689
Q ss_pred EEEEEeecCCCCCCCCcccccccceeEEec-CcccCceeeEecCCCCCCCcccc-CcccccccceeeEeecCCCCCCccc
Q 007787 472 ELSLANTELRDDPMPKPKKLLHLQVLKLKK-NSFIGRKLICRFGCFPSLKEWIV-EFEAIPKLESLIINPCAHLKRLPED 549 (589)
Q Consensus 472 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~f~~L~~l~~-~~~~l~~L~~L~L~~n~~l~~lp~~ 549 (589)
.|+|++|.++...+..+ ..++|+.|.+.+ |.+.. +|. .+..+++|+.|++++|.+. .+|..
T Consensus 158 ~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~---------------i~~~~f~~l~~L~~LdLs~N~l~-~lp~~ 220 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEE---------------LPNDVFHGASGPVILDISRTRIH-SLPSY 220 (350)
T ss_dssp EEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCC---------------CCTTTTTTEECCSEEECTTSCCC-CCCSS
T ss_pred hhccccccccCCChhhc-cccchhHHhhccCCcccC---------------CCHHHhccCcccchhhcCCCCcC-ccChh
Confidence 99999999965554444 557899999975 44432 233 4678999999999999874 56653
Q ss_pred cccCCCCCEEEEeCCc
Q 007787 550 LWRVKSLTKLELWWPR 565 (589)
Q Consensus 550 l~~l~~L~~L~l~~~~ 565 (589)
.+.+|+.|.+.++.
T Consensus 221 --~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 221 --GLENLKKLRARSTY 234 (350)
T ss_dssp --SCTTCCEEECTTCT
T ss_pred --hhccchHhhhccCC
Confidence 36677777776664
No 105
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=1e-15 Score=163.17 Aligned_cols=236 Identities=15% Similarity=0.010 Sum_probs=143.0
Q ss_pred cEEEEcCCCCc-----cCCcccCCCCCCCEEEeecCCccc-cchhhc-----CCCCccEEEecCCcccc-----cccccc
Q 007787 323 KLLNLGTIVLE-----EYPAGINLLLLLKYLKLNIPYLKH-LPASLC-----NLLNLYTIDMPSSYVRC-----TPDSIG 386 (589)
Q Consensus 323 r~L~L~~n~l~-----~~p~~~~~l~~Lr~L~L~~~~i~~-lp~~i~-----~L~~L~~L~L~~~~l~~-----lp~~~~ 386 (589)
+.|+|++|.++ .+|..+..+++|++|++++|.+.. -+..+. .+++|++|++++|.++. ++..+.
T Consensus 88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 167 (461)
T 1z7x_W 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh
Confidence 67899999887 457788889999999999988762 222222 35679999999987754 456677
Q ss_pred ccccCceeeecCcccCC----ccc----ccCCCCcccccccccCCCC----chhhhhcCcccCCCCCCeEEEeeCCCCCC
Q 007787 387 KMHELRHLNFRTITLPA----HPG----KFCTSLENLNFISVLHPSS----CTRDILGRLPSEFELLESLKLVNELKIPS 454 (589)
Q Consensus 387 ~L~~L~~L~l~~~~lp~----~i~----~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~~l~~L~~L~l~~~~~lp~ 454 (589)
.+++|++|+++...+.. .+. ..+++|++|++.++..... .+.. +. .+++|++|++++|..-..
T Consensus 168 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~----~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VA----SKASLRELALGSNKLGDV 242 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HH----HCTTCCEEECCSSBCHHH
T ss_pred hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HH----hCCCccEEeccCCcCChH
Confidence 78899999988333321 122 1256888888877766433 2333 44 678889998887531000
Q ss_pred CCceecCCC--CCCCCCccEEEEEeecCCCC----CCCCcccccccceeEEecCcccCceeeEe----cCCCCCCC----
Q 007787 455 QLSSIVLPE--YQFPPSLIELSLANTELRDD----PMPKPKKLLHLQVLKLKKNSFIGRKLICR----FGCFPSLK---- 520 (589)
Q Consensus 455 ~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~~----~~~f~~L~---- 520 (589)
.+. .++. +..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+...... ....++|+
T Consensus 243 ~~~--~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 243 GMA--ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHH--HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHH--HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 000 1112 33567777777777776543 34455567777777777776543221000 00112221
Q ss_pred -----------ccccCcccccccceeeEeecCCCCCCcccccc-----CCCCCEEEEeCCc
Q 007787 521 -----------EWIVEFEAIPKLESLIINPCAHLKRLPEDLWR-----VKSLTKLELWWPR 565 (589)
Q Consensus 521 -----------~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~-----l~~L~~L~l~~~~ 565 (589)
.++..+..+++|++|++++|.+....+..+.. .++|++|++++|.
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 12334455678888888887664332222221 5688888888876
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=3.4e-16 Score=170.63 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=100.3
Q ss_pred cCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCc-c-------------ccccccccccccCceee-ecCcccCC
Q 007787 339 INLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSY-V-------------RCTPDSIGKMHELRHLN-FRTITLPA 403 (589)
Q Consensus 339 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~-l-------------~~lp~~~~~L~~L~~L~-l~~~~lp~ 403 (589)
+..+++|+.|+|++|.++.+|..|+++++|+.|++++|. + +..|..++.+++|+.|+ ++..
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n---- 420 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA---- 420 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH----
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc----
Confidence 367899999999999999999999999999999997773 2 22344455555555555 2200
Q ss_pred cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCC
Q 007787 404 HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDD 483 (589)
Q Consensus 404 ~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~ 483 (589)
.+++|+.+.+..+. +.. + ....|+.|++++|. |+ .+|.++.+++|+.|+|++|.++ .
T Consensus 421 ----~~~~L~~l~l~~n~-----i~~-l-----~~~~L~~L~Ls~n~-----l~--~lp~~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 421 ----YLDDLRSKFLLENS-----VLK-M-----EYADVRVLHLAHKD-----LT--VLCHLEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp ----HHHHHHHHHHHHHH-----HHH-H-----HHTTCSEEECTTSC-----CS--SCCCGGGGTTCCEEECCSSCCC-C
T ss_pred ----ccchhhhhhhhccc-----ccc-c-----CccCceEEEecCCC-----CC--CCcCccccccCcEeecCccccc-c
Confidence 00111111111000 111 1 11245555555542 22 3333445555566666665554 4
Q ss_pred CCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCC-ccccccCCCCCEEEEe
Q 007787 484 PMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRL-PEDLWRVKSLTKLELW 562 (589)
Q Consensus 484 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~l-p~~l~~l~~L~~L~l~ 562 (589)
+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|.+.+.. |..+..+++|+.|+++
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~---------------lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALEN---------------VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC---------------CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred cchhhhcCCCCCEEECCCCCCCC---------------Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 44555555666666665555533 12 3445555555555555554433 5555555555555555
Q ss_pred CCc
Q 007787 563 WPR 565 (589)
Q Consensus 563 ~~~ 565 (589)
+|+
T Consensus 542 ~N~ 544 (567)
T 1dce_A 542 GNS 544 (567)
T ss_dssp TSG
T ss_pred CCc
Confidence 554
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=2.3e-14 Score=140.86 Aligned_cols=162 Identities=16% Similarity=0.160 Sum_probs=81.0
Q ss_pred chhhHHHHHHhhCCCc--------cCcccEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEec
Q 007787 303 STRQLNQLWIAEGFIP--------ETARKLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMP 374 (589)
Q Consensus 303 ~~~~L~~l~~~~~~i~--------~~ler~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 374 (589)
...+++.+.+..+.+. ..+ +.|++++|.++.+| .++.+++|++|++++|.++.+|. +.++++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L-~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGV-QNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTC-SEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcC-cEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3455666655555443 111 45556665555554 45555566666666655555554 5555556666666
Q ss_pred CCccccccccccccccCceeeecCcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCC
Q 007787 375 SSYVRCTPDSIGKMHELRHLNFRTITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPS 454 (589)
Q Consensus 375 ~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~ 454 (589)
+|.+..+|.... ++|++|+++ ++...+ +.. ++ .+++|+.|++++|.
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~---------------------~N~l~~--~~~-l~----~l~~L~~L~Ls~N~---- 139 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLD---------------------NNELRD--TDS-LI----HLKNLEILSIRNNK---- 139 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECC---------------------SSCCSB--SGG-GT----TCTTCCEEECTTSC----
T ss_pred CCccCCcCcccc--CcccEEEcc---------------------CCccCC--Chh-hc----CcccccEEECCCCc----
Confidence 655555543222 555555554 333211 122 33 34455555555442
Q ss_pred CCceecCCCCCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccC
Q 007787 455 QLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIG 506 (589)
Q Consensus 455 ~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 506 (589)
++ .+|.+..+++|+.|++++|.+.+. ..++.+++|+.|++++|.+..
T Consensus 140 -i~--~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 140 -LK--SIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -CC--BCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred -CC--CChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 11 222244455555556655555443 445555666666665555543
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=5.9e-16 Score=165.06 Aligned_cols=226 Identities=17% Similarity=0.071 Sum_probs=142.7
Q ss_pred cEEEEcCCCCcc-----CCcccCCCCCCCEEEeecCCcccc-chhhc-----CCCCccEEEecCCcccc-----cccccc
Q 007787 323 KLLNLGTIVLEE-----YPAGINLLLLLKYLKLNIPYLKHL-PASLC-----NLLNLYTIDMPSSYVRC-----TPDSIG 386 (589)
Q Consensus 323 r~L~L~~n~l~~-----~p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~-----~L~~L~~L~L~~~~l~~-----lp~~~~ 386 (589)
+.|++++|.++. ++..+..+++|++|++++|.+... +..+. .+++|++|++++|.++. ++..+.
T Consensus 145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 224 (461)
T 1z7x_W 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH
T ss_pred eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH
Confidence 678899888772 456667788999999998887632 22232 35689999999987765 577778
Q ss_pred ccccCceeeecCcccC--------CcccccCCCCcccccccccCCCC----chhhhhcCcccCCCCCCeEEEeeCCCCCC
Q 007787 387 KMHELRHLNFRTITLP--------AHPGKFCTSLENLNFISVLHPSS----CTRDILGRLPSEFELLESLKLVNELKIPS 454 (589)
Q Consensus 387 ~L~~L~~L~l~~~~lp--------~~i~~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~~l~~L~~L~l~~~~~lp~ 454 (589)
.+++|++|+++...+. +.+...+++|++|++.++..... .+.. +. .+++|++|++++|..-..
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~----~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LR----AKESLKELSLAGNELGDE 299 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HH----HCTTCCEEECTTCCCHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-Hh----hCCCcceEECCCCCCchH
Confidence 8889999998833322 12211478888998877765333 2333 44 578899999887631000
Q ss_pred CCceecCCC--CCCCCCccEEEEEeecCCCC----CCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcc-
Q 007787 455 QLSSIVLPE--YQFPPSLIELSLANTELRDD----PMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFE- 527 (589)
Q Consensus 455 ~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~- 527 (589)
... .++. ....++|++|++++|.+++. .+..+..+++|++|++++|.+.+..... +...+.
T Consensus 300 ~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~----------l~~~l~~ 367 (461)
T 1z7x_W 300 GAR--LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE----------LCQGLGQ 367 (461)
T ss_dssp HHH--HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH----------HHHHHTS
T ss_pred HHH--HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH----------HHHHHcC
Confidence 000 1111 22346888888888887654 3445566788888888888765432100 000111
Q ss_pred cccccceeeEeecCCCC----CCccccccCCCCCEEEEeCCc
Q 007787 528 AIPKLESLIINPCAHLK----RLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 528 ~l~~L~~L~L~~n~~l~----~lp~~l~~l~~L~~L~l~~~~ 565 (589)
..++|++|++++|.+.. .+|..+..+++|++|++++|+
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 14577777777776653 456666667777777777776
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=131.84 Aligned_cols=149 Identities=17% Similarity=0.157 Sum_probs=108.5
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccch--hhcCCCCccEEEecCCccccccc-cccccccCceeeecCc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPA--SLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFRTI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~ 399 (589)
+.+++++|.++.+|..+. ..+++|+|++|.++.++. .+.++++|++|++++|.+..++. .+.++++|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-- 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-- 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC--
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC--
Confidence 568999999998888765 456899999999997743 47889999999999998887765 56666666666665
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecC-CC-CCCCCCccEEEEEe
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVL-PE-YQFPPSLIELSLAN 477 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~l-p~-~~~l~~L~~L~L~~ 477 (589)
++...+..+.. ++ .+++|++|++++|. +. .+ |. +..+++|+.|+|++
T Consensus 90 -------------------~N~l~~~~~~~-~~----~l~~L~~L~Ls~N~-----l~--~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 90 -------------------SNRLENVQHKM-FK----GLESLKTLMLRSNR-----IT--CVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp -------------------SSCCCCCCGGG-GT----TCSSCCEEECTTSC-----CC--CBCTTSSTTCTTCSEEECTT
T ss_pred -------------------CCccCccCHhH-hc----CCcCCCEEECCCCc-----CC--eECHhHcCCCccCCEEECCC
Confidence 22222222222 43 45566666666542 22 33 34 77888899999999
Q ss_pred ecCCCCCCCCcccccccceeEEecCcccC
Q 007787 478 TELRDDPMPKPKKLLHLQVLKLKKNSFIG 506 (589)
Q Consensus 478 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 506 (589)
|.+++..|..++.+++|+.|++++|.+..
T Consensus 139 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 139 NQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99888878888999999999998888754
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=1.8e-13 Score=131.59 Aligned_cols=149 Identities=20% Similarity=0.202 Sum_probs=106.4
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCcccccccc-ccccccCceeeecCcc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFRTIT 400 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 400 (589)
..++.+++.++.+|..+. ++|++|+|++|.++.+ |..+.++++|++|+|++|.+..+|.. +..+++|++|+++..
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N- 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN- 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-
Confidence 558899999999988765 8999999999999966 56788999999999999998888754 566777777777522
Q ss_pred cCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeec
Q 007787 401 LPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTE 479 (589)
Q Consensus 401 lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~ 479 (589)
...+..+.. +. .+++|+.|++++|. ++ .+|. +..+++|+.|+|++|.
T Consensus 99 --------------------~l~~l~~~~-~~----~l~~L~~L~Ls~N~-----l~--~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 99 --------------------QLTVLPSAV-FD----RLVHLKELFMCCNK-----LT--ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp --------------------CCCCCCTTT-TT----TCTTCCEEECCSSC-----CC--SCCTTGGGCTTCSEEECCSSC
T ss_pred --------------------cCCccChhH-hC----cchhhCeEeccCCc-----cc--ccCcccccCCCCCEEECCCCc
Confidence 111111111 32 45556666666542 22 5566 6677788888888888
Q ss_pred CCCCCCCCcccccccceeEEecCcccC
Q 007787 480 LRDDPMPKPKKLLHLQVLKLKKNSFIG 506 (589)
Q Consensus 480 l~~~~~~~l~~l~~L~~L~L~~n~~~~ 506 (589)
+....+..+..+++|+.|++++|.+..
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 876666677788888888888777653
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=1.9e-13 Score=128.12 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=116.8
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCcccc-ccccccccccCceeeecCc--
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRC-TPDSIGKMHELRHLNFRTI-- 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~~~~L~~L~~L~l~~~-- 399 (589)
+.|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .|..+.++++|++|+++..
T Consensus 47 ~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 47 TYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp CEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred cEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 78999999999888 7999999999999999887775 68899999999999998875 6888999999999999932
Q ss_pred --ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEe
Q 007787 400 --TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLAN 477 (589)
Q Consensus 400 --~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~ 477 (589)
..|..+. .+++|++|++.++......+ . +. .+++|+.|++++|. +. .++.+..+++|+.|++++
T Consensus 125 ~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~-~-l~----~l~~L~~L~l~~n~-----i~--~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 125 DDSILTKIN-TLPKVNSIDLSYNGAITDIM-P-LK----TLPELKSLNIQFDG-----VH--DYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp BGGGHHHHT-TCSSCCEEECCSCTBCCCCG-G-GG----GCSSCCEEECTTBC-----CC--CCTTGGGCSSCCEEEECB
T ss_pred CcHhHHHHh-hCCCCCEEEccCCCCccccH-h-hc----CCCCCCEEECCCCC-----Cc--ChHHhccCCCCCEEEeeC
Confidence 3466688 99999999988876333333 5 65 78999999999874 22 333467889999999999
Q ss_pred ecCC
Q 007787 478 TELR 481 (589)
Q Consensus 478 n~l~ 481 (589)
|++.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 9974
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=1.5e-13 Score=131.17 Aligned_cols=149 Identities=15% Similarity=0.210 Sum_probs=96.8
Q ss_pred CEEEeecCCccccchhhcCCCCccEEEecCCccccccc-cccccccCceeeecCcccCCcccccCCCCcccccccccCCC
Q 007787 346 KYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFRTITLPAHPGKFCTSLENLNFISVLHPS 424 (589)
Q Consensus 346 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~~lp~~i~~~l~~L~~L~l~~~~~~~ 424 (589)
+.++++++.++.+|..+. ++|+.|++++|.+..+|. .+..+++|+.|+++ ++...+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls---------------------~N~i~~ 70 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS---------------------NNQISE 70 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECC---------------------SSCCCE
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECC---------------------CCcCCC
Confidence 678888888888887665 688999999998877765 45555666665554 222211
Q ss_pred CchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecC
Q 007787 425 SCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKN 502 (589)
Q Consensus 425 ~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 502 (589)
..+.. +. .+++|++|++++|. ++ .+|. |..+++|+.|+|++|.+.+..+..++.+++|++|+|++|
T Consensus 71 ~~~~~-~~----~l~~L~~L~Ls~N~-----l~--~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 71 LAPDA-FQ----GLRSLNSLVLYGNK-----IT--ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp ECTTT-TT----TCSSCCEEECCSSC-----CC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCHHH-hh----CCcCCCEEECCCCc-----CC--ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 12223 43 45556666666542 22 4555 567777777777777777776777777777777777777
Q ss_pred cccCceeeEecCCCCCCCccccCcccccccceeeEeecCCC
Q 007787 503 SFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHL 543 (589)
Q Consensus 503 ~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l 543 (589)
.+.+.. +..+..+++|+.|+|++|++.
T Consensus 139 ~l~~~~--------------~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 139 KLQTIA--------------KGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSCCC--------------TTTTTTCTTCCEEECCSSCEE
T ss_pred cCCEEC--------------HHHHhCCCCCCEEEeCCCCcC
Confidence 765433 223555677777777777653
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=130.29 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=78.7
Q ss_pred CEEEeecCCccccchhhcCCCCccEEEecCCccccccc--cccccccCceeeecCcccCCcccccCCCCcccccccccCC
Q 007787 346 KYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPD--SIGKMHELRHLNFRTITLPAHPGKFCTSLENLNFISVLHP 423 (589)
Q Consensus 346 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~--~~~~L~~L~~L~l~~~~lp~~i~~~l~~L~~L~l~~~~~~ 423 (589)
+.+++++|.++.+|..+. ..+++|++++|.+..++. .+.+++ +|++|++.++...
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~---------------------~L~~L~L~~N~i~ 70 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLP---------------------QLRKINFSNNKIT 70 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCT---------------------TCCEEECCSSCCC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCC---------------------CCCEEECCCCcCC
Confidence 578888888888877553 346788888887766632 134344 4444443332221
Q ss_pred CCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCCCCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCc
Q 007787 424 SSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPEYQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNS 503 (589)
Q Consensus 424 ~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 503 (589)
+..+.. +..+++|++|+|++|.+++..+..++.+++|++|+|++|.
T Consensus 71 ~i~~~~----------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 71 DIEEGA----------------------------------FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp EECTTT----------------------------------TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred EECHHH----------------------------------hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence 111112 3444555555555555554444445555555555555555
Q ss_pred ccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 504 FIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 504 ~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+.+.. |..+..+++|+.|+|++|.+.+..|..|..+++|+.|++++||
T Consensus 117 l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 117 ITCVG--------------NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCBC--------------TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCeEC--------------HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 54332 2234445555555555555544445555555555555555554
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=3.6e-13 Score=129.45 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=31.6
Q ss_pred CCEEEeecCCccccchhhcCCCCccEEEecCCccccc-cccccccccCceeee
Q 007787 345 LKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNF 396 (589)
Q Consensus 345 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l 396 (589)
-+.++.+++.+..+|..+. ++|++|++++|.+..+ |..+.++++|++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 71 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYL 71 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEEC
Confidence 4567777777777776554 6777888887777655 333444444444444
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=1.3e-13 Score=142.24 Aligned_cols=171 Identities=20% Similarity=0.125 Sum_probs=119.1
Q ss_pred CCEEEeecCCccccchhhcCCCCccEEEecCCcccccccc-cc-ccccCceeeecCcccCCcccccCCCCcccccccccC
Q 007787 345 LKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDS-IG-KMHELRHLNFRTITLPAHPGKFCTSLENLNFISVLH 422 (589)
Q Consensus 345 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-~~-~L~~L~~L~l~~~~lp~~i~~~l~~L~~L~l~~~~~ 422 (589)
-+.++++++.++.+|..+. .+++.|+|++|.+..+|.. +. ++++|++|+++.. ..
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N---------------------~i 76 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN---------------------HL 76 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS---------------------CC
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC---------------------cC
Confidence 3689999999999997664 4689999999999888765 44 6777777777622 11
Q ss_pred CCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEe
Q 007787 423 PSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLK 500 (589)
Q Consensus 423 ~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 500 (589)
.+..+.. +. .+++|+.|+|++|. |+ .+|. |..+++|+.|+|++|.+....+..|+.+++|+.|+|+
T Consensus 77 ~~i~~~~-~~----~l~~L~~L~Ls~N~-----l~--~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 77 NFISSEA-FV----PVPNLRYLDLSSNH-----LH--TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp CEECTTT-TT----TCTTCCEEECCSSC-----CC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CccChhh-cc----CCCCCCEEECCCCc-----CC--cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC
Confidence 1111122 33 45566666666652 23 3444 7788888888888888877777888888899999998
Q ss_pred cCcccCceeeEecCCCCCCCccccC-c---ccccccceeeEeecCCCCCCccccccCCC--CCEEEEeCCc
Q 007787 501 KNSFIGRKLICRFGCFPSLKEWIVE-F---EAIPKLESLIINPCAHLKRLPEDLWRVKS--LTKLELWWPR 565 (589)
Q Consensus 501 ~n~~~~~~~~~~~~~f~~L~~l~~~-~---~~l~~L~~L~L~~n~~l~~lp~~l~~l~~--L~~L~l~~~~ 565 (589)
+|.+.+.. .. + ..+++|+.|+|++|.+....+..+..++. |+.|++++||
T Consensus 145 ~N~l~~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 145 QNQISRFP---------------VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCSCC---------------GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcCCeeC---------------HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 88875432 22 2 56888999999988876543455677776 4788998876
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=2e-13 Score=129.10 Aligned_cols=99 Identities=23% Similarity=0.319 Sum_probs=76.7
Q ss_pred cEEEEcCCCCccCCc-ccCCCCCCCEEEeecCCccccchh-hcCCCCccEEEecCCcccccccc-ccccccCceeeec--
Q 007787 323 KLLNLGTIVLEEYPA-GINLLLLLKYLKLNIPYLKHLPAS-LCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~-- 397 (589)
+.|++++|.++.+|. .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|.. +.++++|++|+++
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 779999999996665 578999999999999999988765 57899999999999999888765 6788888888887
Q ss_pred -CcccCCc-ccccCCCCcccccccccC
Q 007787 398 -TITLPAH-PGKFCTSLENLNFISVLH 422 (589)
Q Consensus 398 -~~~lp~~-i~~~l~~L~~L~l~~~~~ 422 (589)
...+|.. +. .+++|++|++.++..
T Consensus 111 ~l~~~~~~~~~-~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 111 QLQSLPDGVFD-KLTQLKDLRLYQNQL 136 (208)
T ss_dssp CCCCCCTTTTT-TCTTCCEEECCSSCC
T ss_pred cCcccCHhHhc-cCCcCCEEECCCCcc
Confidence 2233332 34 556666666544433
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=8e-13 Score=129.85 Aligned_cols=91 Identities=24% Similarity=0.261 Sum_probs=70.5
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCc---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTI--- 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~--- 399 (589)
+.|+|++|.++.+|. ++.+++|++|++++|.++.+|.... ++|++|++++|.+..+| .+.++++|++|+++..
T Consensus 66 ~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 66 KELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCC
T ss_pred CEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCC
Confidence 789999999998877 9999999999999999999886433 99999999999998875 5777888888888622
Q ss_pred ccCCcccccCCCCccccccc
Q 007787 400 TLPAHPGKFCTSLENLNFIS 419 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~ 419 (589)
.+| .+. .+++|++|++.+
T Consensus 142 ~~~-~l~-~l~~L~~L~L~~ 159 (263)
T 1xeu_A 142 SIV-MLG-FLSKLEVLDLHG 159 (263)
T ss_dssp BCG-GGG-GCTTCCEEECTT
T ss_pred CCh-HHc-cCCCCCEEECCC
Confidence 222 344 445555554433
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=1.7e-14 Score=158.86 Aligned_cols=74 Identities=12% Similarity=-0.002 Sum_probs=36.0
Q ss_pred cEEEEcCCCCcc-----CCcccCCCCCCCEEEeecCCcc-----ccchhhcCCCCccEEEecCCccccccccccccccCc
Q 007787 323 KLLNLGTIVLEE-----YPAGINLLLLLKYLKLNIPYLK-----HLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELR 392 (589)
Q Consensus 323 r~L~L~~n~l~~-----~p~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~ 392 (589)
+.|+|++|.++. ++..+..+++|++|++++|.++ .++..+.++++|++|++++|.+..+|..+.++++|+
T Consensus 167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~ 246 (592)
T 3ogk_B 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246 (592)
T ss_dssp SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCC
T ss_pred CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHH
Confidence 446666665431 2222334555555555555543 233333455555555555555544444444444444
Q ss_pred eeee
Q 007787 393 HLNF 396 (589)
Q Consensus 393 ~L~l 396 (589)
+|++
T Consensus 247 ~L~l 250 (592)
T 3ogk_B 247 EFCG 250 (592)
T ss_dssp EEEE
T ss_pred hhcc
Confidence 4444
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=8.4e-16 Score=167.52 Aligned_cols=197 Identities=16% Similarity=0.070 Sum_probs=134.1
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCC--------------ccccchhhcCCCCccEEE-ecCCccccccccccc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPY--------------LKHLPASLCNLLNLYTID-MPSSYVRCTPDSIGK 387 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~--------------i~~lp~~i~~L~~L~~L~-L~~~~l~~lp~~~~~ 387 (589)
+.|+|++|.++.+|..+++|++|+.|++++|. ...+|..++.+++|+.|+ ++.|.+..++.
T Consensus 352 ~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~---- 427 (567)
T 1dce_A 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS---- 427 (567)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH----
T ss_pred eeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh----
Confidence 45899999999999999999999999987653 225567788899999998 66665444332
Q ss_pred cccCceeeecCcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCC
Q 007787 388 MHELRHLNFRTITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQF 466 (589)
Q Consensus 388 L~~L~~L~l~~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~ 466 (589)
+.++...+. .+ ....|+.|++.++...+ +.. ++ .+++|+.|++++|. |+ .+|. ++.
T Consensus 428 ------l~l~~n~i~-~l--~~~~L~~L~Ls~n~l~~--lp~-~~----~l~~L~~L~Ls~N~-----l~--~lp~~~~~ 484 (567)
T 1dce_A 428 ------KFLLENSVL-KM--EYADVRVLHLAHKDLTV--LCH-LE----QLLLVTHLDLSHNR-----LR--ALPPALAA 484 (567)
T ss_dssp ------HHHHHHHHH-HH--HHTTCSEEECTTSCCSS--CCC-GG----GGTTCCEEECCSSC-----CC--CCCGGGGG
T ss_pred ------hhhhccccc-cc--CccCceEEEecCCCCCC--CcC-cc----ccccCcEeecCccc-----cc--ccchhhhc
Confidence 222211111 00 01235556655544322 123 44 56777777777763 33 6777 788
Q ss_pred CCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCC
Q 007787 467 PPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRL 546 (589)
Q Consensus 467 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~l 546 (589)
+++|+.|+|++|.+++ +| .++.+++|+.|+|++|.+++.. .|..++.+++|+.|+|++|++.+..
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~-------------~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSA-------------AIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSS-------------TTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCC-------------CcHHHhcCCCCCEEEecCCcCCCCc
Confidence 8889999999998876 44 7888899999999888875531 0456778889999999998886544
Q ss_pred ccc---cccCCCCCEEEE
Q 007787 547 PED---LWRVKSLTKLEL 561 (589)
Q Consensus 547 p~~---l~~l~~L~~L~l 561 (589)
|.. +..+|+|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 421 234788888864
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=3.1e-14 Score=159.93 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=71.9
Q ss_pred CCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---CcccCCcc
Q 007787 329 TIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TITLPAHP 405 (589)
Q Consensus 329 ~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~~lp~~i 405 (589)
.|.+...|..+..+.+|+.|+|++|.+..+|..++++++|++|+|++|.+..+|..+++|++|++|+|+ ...+|..+
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp ------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 333344466777788888888888888888877778888888888888777788778888888888887 34566667
Q ss_pred cccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeC
Q 007787 406 GKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNE 449 (589)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~ 449 (589)
+ .|++|++|++.+|.. ...+.. ++ .+++|+.|+|++|
T Consensus 290 ~-~l~~L~~L~L~~N~l-~~lp~~-~~----~l~~L~~L~L~~N 326 (727)
T 4b8c_D 290 G-SCFQLKYFYFFDNMV-TTLPWE-FG----NLCNLQFLGVEGN 326 (727)
T ss_dssp G-GGTTCSEEECCSSCC-CCCCSS-TT----SCTTCCCEECTTS
T ss_pred c-CCCCCCEEECCCCCC-CccChh-hh----cCCCccEEeCCCC
Confidence 6 777777777555543 234444 44 4555566655554
No 121
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.39 E-value=5.1e-14 Score=154.94 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=26.7
Q ss_pred cccccccceeeEeecCCCCC-CccccccCCCCCEEEEeCCc
Q 007787 526 FEAIPKLESLIINPCAHLKR-LPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 526 ~~~l~~L~~L~L~~n~~l~~-lp~~l~~l~~L~~L~l~~~~ 565 (589)
...+++|++|+|++|++... ++..+..+++|++|++++|.
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 34567788888888875322 33334567788888888876
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=7.2e-13 Score=148.79 Aligned_cols=108 Identities=26% Similarity=0.277 Sum_probs=100.0
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeec---Cc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR---TI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~---~~ 399 (589)
+.|+|++|.+..+|..++++++|++|+|++|.|+.+|..+++|++|++|+|++|.+..+|..+++|++|++|+|+ ..
T Consensus 227 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC
T ss_pred cEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999 56
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhc
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILG 432 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~ 432 (589)
.+|..++ .+++|++|++.+|...+..+.. +.
T Consensus 307 ~lp~~~~-~l~~L~~L~L~~N~l~~~~p~~-~~ 337 (727)
T 4b8c_D 307 TLPWEFG-NLCNLQFLGVEGNPLEKQFLKI-LT 337 (727)
T ss_dssp CCCSSTT-SCTTCCCEECTTSCCCSHHHHH-HH
T ss_pred ccChhhh-cCCCccEEeCCCCccCCCChHH-Hh
Confidence 7898999 9999999998888877666666 54
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=5.1e-12 Score=112.55 Aligned_cols=118 Identities=18% Similarity=0.090 Sum_probs=96.2
Q ss_pred cEEEEcCCCCc--cCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCcccc-ccccccccccCceeeecC-
Q 007787 323 KLLNLGTIVLE--EYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRC-TPDSIGKMHELRHLNFRT- 398 (589)
Q Consensus 323 r~L~L~~n~l~--~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~~~~L~~L~~L~l~~- 398 (589)
+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++|+++.
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 67999999998 8999999999999999999999988 678999999999999999877 788788899999999982
Q ss_pred --cccC--CcccccCCCCcccccccccCCCCch---hhhhcCcccCCCCCCeEEEe
Q 007787 399 --ITLP--AHPGKFCTSLENLNFISVLHPSSCT---RDILGRLPSEFELLESLKLV 447 (589)
Q Consensus 399 --~~lp--~~i~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~~l~~L~~L~l~ 447 (589)
..+| ..+. .+++|++|++.++...+..+ .. ++ .+++|+.|+++
T Consensus 99 ~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~-~~----~l~~L~~L~l~ 148 (149)
T 2je0_A 99 KIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENV-FK----LLPQLTYLDGY 148 (149)
T ss_dssp CCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHH-HH----HCTTCCEETTB
T ss_pred cCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHH-HH----HCCCcccccCC
Confidence 2322 5677 88999999987776533332 23 54 67788887654
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=9.4e-12 Score=113.21 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=69.0
Q ss_pred cEEEEcCCCCc--cCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCcccc-ccccccccccCceeeecC-
Q 007787 323 KLLNLGTIVLE--EYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRC-TPDSIGKMHELRHLNFRT- 398 (589)
Q Consensus 323 r~L~L~~n~l~--~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~~~~L~~L~~L~l~~- 398 (589)
+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|++|+++.
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 66888888887 7888788888888888888888877 667788888888888887766 666666677777777762
Q ss_pred --cccC--CcccccCCCCccccccccc
Q 007787 399 --ITLP--AHPGKFCTSLENLNFISVL 421 (589)
Q Consensus 399 --~~lp--~~i~~~l~~L~~L~l~~~~ 421 (589)
..+| ..+. .+++|++|++.++.
T Consensus 106 ~l~~~~~~~~l~-~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 106 KLKDISTLEPLK-KLECLKSLDLFNCE 131 (168)
T ss_dssp SCCSSGGGGGGS-SCSCCCEEECCSSG
T ss_pred ccCcchhHHHHh-cCCCCCEEEeeCCc
Confidence 2222 3344 55555555544443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=2e-11 Score=113.82 Aligned_cols=128 Identities=19% Similarity=0.266 Sum_probs=89.8
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchh--hcCCCCccEEEecCCccccc-cccccccccCceeeecCc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPAS--LCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFRTI 399 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~ 399 (589)
+.+++++|.++.+|..+.. +|++|++++|.++.+|.. ++.+++|++|+|++|.+..+ |..+.++++|++|+++..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5689999999999987764 899999999999988764 78999999999999988777 566777777777777622
Q ss_pred ccCCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEee
Q 007787 400 TLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANT 478 (589)
Q Consensus 400 ~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n 478 (589)
.+ .+..+.. +. .+++|+.|++++|. +.. ..|. +..+++|+.|+|++|
T Consensus 89 ~l---------------------~~~~~~~-~~----~l~~L~~L~L~~N~-----l~~-~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KI---------------------KEISNKM-FL----GLHQLKTLNLYDNQ-----ISC-VMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CC---------------------CEECSSS-ST----TCTTCCEEECCSSC-----CCE-ECTTSSTTCTTCCEEECTTC
T ss_pred cC---------------------CccCHHH-hc----CCCCCCEEECCCCc-----CCe-eCHHHhhcCCCCCEEEeCCC
Confidence 11 1111111 32 34555555555542 221 1344 777888888999888
Q ss_pred cCCCCC
Q 007787 479 ELRDDP 484 (589)
Q Consensus 479 ~l~~~~ 484 (589)
.+.+..
T Consensus 137 ~l~c~c 142 (192)
T 1w8a_A 137 PFNCNC 142 (192)
T ss_dssp CBCCSG
T ss_pred CccCcC
Confidence 886653
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=2e-11 Score=113.83 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=96.2
Q ss_pred CEEEeecCCccccchhhcCCCCccEEEecCCcccccccc--ccccccCceeeecCcccCCcccccCCCCcccccccccCC
Q 007787 346 KYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDS--IGKMHELRHLNFRTITLPAHPGKFCTSLENLNFISVLHP 423 (589)
Q Consensus 346 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~--~~~L~~L~~L~l~~~~lp~~i~~~l~~L~~L~l~~~~~~ 423 (589)
++++++++.++.+|..+.. +|++|++++|.+..+|.. +..+++|++|+++ ++...
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls---------------------~N~l~ 67 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELK---------------------RNQLT 67 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC---------------------SSCCC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECC---------------------CCCCC
Confidence 7889999999988886654 899999999988877653 5555555555554 33333
Q ss_pred CCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEec
Q 007787 424 SSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKK 501 (589)
Q Consensus 424 ~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 501 (589)
+..+.. ++ .+++|+.|++++|. ++ .++. +..+++|++|+|++|.+++..|..++.+++|++|++++
T Consensus 68 ~~~~~~-~~----~l~~L~~L~Ls~N~-----l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 68 GIEPNA-FE----GASHIQELQLGENK-----IK--EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CBCTTT-TT----TCTTCCEEECCSCC-----CC--EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CcCHhH-cC----CcccCCEEECCCCc-----CC--ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 333444 65 67788888888863 33 4444 88899999999999999888899999999999999999
Q ss_pred CcccCc
Q 007787 502 NSFIGR 507 (589)
Q Consensus 502 n~~~~~ 507 (589)
|.+.+.
T Consensus 136 N~l~c~ 141 (192)
T 1w8a_A 136 NPFNCN 141 (192)
T ss_dssp CCBCCS
T ss_pred CCccCc
Confidence 988654
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=7.4e-12 Score=113.90 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=34.7
Q ss_pred CCCCCEEEeecCCcc--ccchhhcCCCCccEEEecCCccccccccccccccCceeeec
Q 007787 342 LLLLKYLKLNIPYLK--HLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR 397 (589)
Q Consensus 342 l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~ 397 (589)
.++|++|++++|.++ .+|..+..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELS 79 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECc
Confidence 466777777777776 6776667777777777777766555 344444444444443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=5.2e-11 Score=111.06 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=91.0
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccc-cccccccCceeeecCccc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFRTITL 401 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~~l 401 (589)
+++++++|.++.+|..+. ++|++|++++|.++.+|..+.++++|++|+|++|.+..++. .|.++++|++|+++.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~--- 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY--- 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS---
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC---
Confidence 568999999999988765 68999999999999999999999999999999999888764 467777777777652
Q ss_pred CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeec
Q 007787 402 PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTE 479 (589)
Q Consensus 402 p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~ 479 (589)
+...+..+.. +. .+++|+.|++++|. ++ .+|. +..+++|+.|+|++|.
T Consensus 88 ------------------N~l~~i~~~~-f~----~l~~L~~L~L~~N~-----l~--~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 ------------------NRLRCIPPRT-FD----GLKSLRLLSLHGND-----IS--VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ------------------SCCCBCCTTT-TT----TCTTCCEEECCSSC-----CC--BCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------CccCEeCHHH-hC----CCCCCCEEECCCCC-----CC--eeChhhhhcCccccEEEeCCCC
Confidence 2221111222 43 45566666666653 22 4554 6778888888888888
Q ss_pred CCC
Q 007787 480 LRD 482 (589)
Q Consensus 480 l~~ 482 (589)
+.+
T Consensus 138 ~~C 140 (193)
T 2wfh_A 138 LYC 140 (193)
T ss_dssp EEC
T ss_pred eec
Confidence 754
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=6.1e-11 Score=110.57 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=96.2
Q ss_pred CEEEeecCCccccchhhcCCCCccEEEecCCccccccccccccccCceeeecCcccCCcccccCCCCcccccccccCCCC
Q 007787 346 KYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITLPAHPGKFCTSLENLNFISVLHPSS 425 (589)
Q Consensus 346 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~i~~~l~~L~~L~l~~~~~~~~ 425 (589)
++++++++.++.+|..+. ++|++|++++|.+..+|..+.++++|++|+++.. ...+.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N---------------------~i~~i 69 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN---------------------RISTL 69 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS---------------------CCCCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC---------------------cCCEe
Confidence 688999999999987654 6899999999998888877777777777766522 22111
Q ss_pred chhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCc
Q 007787 426 CTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNS 503 (589)
Q Consensus 426 ~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 503 (589)
.+.. +. .+++|+.|++++|. ++ .+|. |..+++|+.|+|++|.++..++..+..+++|+.|++++|.
T Consensus 70 ~~~~-f~----~l~~L~~L~Ls~N~-----l~--~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 70 SNQS-FS----NMTQLLTLILSYNR-----LR--CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CTTT-TT----TCTTCCEEECCSSC-----CC--BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CHhH-cc----CCCCCCEEECCCCc-----cC--EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 2223 54 67888999998874 33 4554 8889999999999999987777788999999999999888
Q ss_pred ccC
Q 007787 504 FIG 506 (589)
Q Consensus 504 ~~~ 506 (589)
+..
T Consensus 138 ~~C 140 (193)
T 2wfh_A 138 LYC 140 (193)
T ss_dssp EEC
T ss_pred eec
Confidence 743
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.15 E-value=1.1e-12 Score=144.40 Aligned_cols=239 Identities=15% Similarity=0.115 Sum_probs=144.2
Q ss_pred cEEEEcCCCCcc-----CCcccCCCCCCCEEEeecCC--cc--ccchhhcCCCCccEEEecCC-ccccccccccccccCc
Q 007787 323 KLLNLGTIVLEE-----YPAGINLLLLLKYLKLNIPY--LK--HLPASLCNLLNLYTIDMPSS-YVRCTPDSIGKMHELR 392 (589)
Q Consensus 323 r~L~L~~n~l~~-----~p~~~~~l~~Lr~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~-~l~~lp~~~~~L~~L~ 392 (589)
+.|+|++|.++. ++.....+++|++|++++|. +. .++..+.++++|++|++++| .+..+|..+.++++|+
T Consensus 159 ~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 238 (594)
T 2p1m_B 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238 (594)
T ss_dssp CEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCS
T ss_pred CEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcce
Confidence 678888888652 33333467788888888886 32 33333456788888888888 6666776677777777
Q ss_pred eeeec----------------------------------CcccCCcccccCCCCcccccccccCCCCchhhhhcCcccCC
Q 007787 393 HLNFR----------------------------------TITLPAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEF 438 (589)
Q Consensus 393 ~L~l~----------------------------------~~~lp~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l 438 (589)
+|+++ ...+|..+. .+++|++|++..+......+...+. .+
T Consensus 239 ~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~----~~ 313 (594)
T 2p1m_B 239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLC----QC 313 (594)
T ss_dssp EEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHT----TC
T ss_pred EcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHh----cC
Confidence 77643 111222233 4567777776665532222222122 56
Q ss_pred CCCCeEEEeeCC---CC------CCCCceecC---------CC--C---------CCCCCccEEEEEeecCCCCCCCCcc
Q 007787 439 ELLESLKLVNEL---KI------PSQLSSIVL---------PE--Y---------QFPPSLIELSLANTELRDDPMPKPK 489 (589)
Q Consensus 439 ~~L~~L~l~~~~---~l------p~~L~~L~l---------p~--~---------~~l~~L~~L~L~~n~l~~~~~~~l~ 489 (589)
++|++|+++++- .+ -++|+.|.+ .. + ..+++|+.|.+..|.+++..+..+.
T Consensus 314 ~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence 777777777631 00 134555422 00 1 2378888998888877655555554
Q ss_pred -cccccceeEEe--c----CcccCce----eeEecCCCCCCCcccc----------Ccc-cccccceeeEeecCCCCCCc
Q 007787 490 -KLLHLQVLKLK--K----NSFIGRK----LICRFGCFPSLKEWIV----------EFE-AIPKLESLIINPCAHLKRLP 547 (589)
Q Consensus 490 -~l~~L~~L~L~--~----n~~~~~~----~~~~~~~f~~L~~l~~----------~~~-~l~~L~~L~L~~n~~l~~lp 547 (589)
.+++|+.|+++ + +.+++.. +......+++|+.+.. .++ .+++|+.|+|++|.+....+
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 58999999998 3 3444211 1111234555643322 122 37889999999998754333
Q ss_pred ccc-ccCCCCCEEEEeCCcH
Q 007787 548 EDL-WRVKSLTKLELWWPRF 566 (589)
Q Consensus 548 ~~l-~~l~~L~~L~l~~~~~ 566 (589)
..+ ..+++|++|++++|+.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSC
T ss_pred HHHHhcCCCcCEEECcCCCC
Confidence 333 5689999999999983
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=4.1e-11 Score=121.69 Aligned_cols=211 Identities=12% Similarity=0.042 Sum_probs=132.0
Q ss_pred cEEEEcCCCCc--------------------cCCc-ccCC--------CCCCCEEEeecCCccccch-hhcCCCCccEEE
Q 007787 323 KLLNLGTIVLE--------------------EYPA-GINL--------LLLLKYLKLNIPYLKHLPA-SLCNLLNLYTID 372 (589)
Q Consensus 323 r~L~L~~n~l~--------------------~~p~-~~~~--------l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~ 372 (589)
+.|||++|.+. .+|. .|.+ |++|+.|+|.. .++.+++ ++.++++|+.|+
T Consensus 52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~ 130 (329)
T 3sb4_A 52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ 130 (329)
T ss_dssp CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE
T ss_pred eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEE
Confidence 56888888876 2222 4556 78888888887 7777765 466788888888
Q ss_pred ecCCcccccccc-ccccccCceeeecC-------cccC-CcccccCCCCc-ccccccccCCCCchhh-------------
Q 007787 373 MPSSYVRCTPDS-IGKMHELRHLNFRT-------ITLP-AHPGKFCTSLE-NLNFISVLHPSSCTRD------------- 429 (589)
Q Consensus 373 L~~~~l~~lp~~-~~~L~~L~~L~l~~-------~~lp-~~i~~~l~~L~-~L~l~~~~~~~~~~~~------------- 429 (589)
+++|.+..++.. |..+.++..+..+. ..+. ..+. .+.+|+ .+.+... +..+..
T Consensus 131 l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~-~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 131 IRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI-EGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp BCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE-ESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSE
T ss_pred cCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc-cccccceeEEecCC---CcHHHHHhhcccCccccce
Confidence 888877666443 66666666555441 1111 1122 334443 1111000 000000
Q ss_pred ----------hhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccc-e
Q 007787 430 ----------ILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQ-V 496 (589)
Q Consensus 430 ----------~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~ 496 (589)
.+..+...+++|+.|+++.+. ++ .+|. |..+++|+.|+|.+| +.......|.++++|+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-----i~--~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTN-----AT--TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBC-----CC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCC-----cc--eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 000000136788888887653 33 6777 888999999999887 6666777889999998 9
Q ss_pred eEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEE
Q 007787 497 LKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLEL 561 (589)
Q Consensus 497 L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l 561 (589)
+.+.+ .+.... +..+..+++|+.|++.+|.+...-+..|.++++|+.|+.
T Consensus 279 l~l~~-~l~~I~--------------~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIE--------------FGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEEC--------------TTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEc--------------hhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99954 432211 235667899999999888875544557889999999864
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.14 E-value=7e-13 Score=145.86 Aligned_cols=214 Identities=14% Similarity=0.107 Sum_probs=120.3
Q ss_pred cCCcccCCCCCCCEEEeecCCcc--ccchhhcCCCCccEEEecCCcc-ccccccccccccCceeeecC---------ccc
Q 007787 334 EYPAGINLLLLLKYLKLNIPYLK--HLPASLCNLLNLYTIDMPSSYV-RCTPDSIGKMHELRHLNFRT---------ITL 401 (589)
Q Consensus 334 ~~p~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l-~~lp~~~~~L~~L~~L~l~~---------~~l 401 (589)
.+|..+..+++|++|++++|.++ .++..+.++++|++|++++|.. ..++.....+++|++|+++. ..+
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 44444456777888888877765 2333456777888888877711 22232333577788877721 111
Q ss_pred CC----cccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCC-CCCCCcee----cCCC-CCCCCCcc
Q 007787 402 PA----HPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELK-IPSQLSSI----VLPE-YQFPPSLI 471 (589)
Q Consensus 402 p~----~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~-lp~~L~~L----~lp~-~~~l~~L~ 471 (589)
.. .+...+++|++|.+..++..+..+.. +. ..+++|+.|+++.++. -+.++... .++. +..+++|+
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~-l~---~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALIT-IA---RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH-HH---HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH-HH---hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 11 12214677777754333334334444 43 1467888888883110 00011100 1111 34567788
Q ss_pred EEEEEeecCCCCCCCCccc-ccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCc-cc
Q 007787 472 ELSLANTELRDDPMPKPKK-LLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLP-ED 549 (589)
Q Consensus 472 ~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp-~~ 549 (589)
.|+|++ .++...+..++. +++|+.|+|++|.+++..+ +.....+++|++|+|++|++....+ ..
T Consensus 436 ~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~-------------~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 436 RLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM-------------HHVLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp EEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH-------------HHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred EEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH-------------HHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 888866 444444444554 7788888888777644321 1112457888888888888733222 23
Q ss_pred cccCCCCCEEEEeCCc
Q 007787 550 LWRVKSLTKLELWWPR 565 (589)
Q Consensus 550 l~~l~~L~~L~l~~~~ 565 (589)
+..+++|+.|++++|+
T Consensus 502 ~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCS 517 (594)
T ss_dssp GGGGGGSSEEEEESSC
T ss_pred HHhCCCCCEEeeeCCC
Confidence 4557888888888887
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=2.5e-10 Score=104.66 Aligned_cols=126 Identities=23% Similarity=0.254 Sum_probs=70.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchh-hcCCCCccEEEecCCccccccccccccccCceeeecCccc
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPAS-LCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFRTITL 401 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~l 401 (589)
+.++++++.++.+|..+. ++|++|++++|.++.+|.. ++.+++|++|++++|.+..+|..
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------- 70 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG----------------- 70 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-----------------
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh-----------------
Confidence 346666666666664443 5666666666666655543 35566666666666665554432
Q ss_pred CCcccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeec
Q 007787 402 PAHPGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTE 479 (589)
Q Consensus 402 p~~i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~ 479 (589)
.+. .+++|++|++.++.. + .+|. +..+++|++|++++|.
T Consensus 71 --~~~-~l~~L~~L~l~~N~l----------------------------------~--~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 71 --VFD-KLTKLTILYLHENKL----------------------------------Q--SLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp --TTT-TCTTCCEEECCSSCC----------------------------------C--CCCTTTTTTCTTCCEEECCSSC
T ss_pred --Hcc-CCCccCEEECCCCCc----------------------------------c--ccCHHHhhCCcccCEEECcCCc
Confidence 112 333333333222221 1 2222 4556677777777777
Q ss_pred CCCCCCCCcccccccceeEEecCcccC
Q 007787 480 LRDDPMPKPKKLLHLQVLKLKKNSFIG 506 (589)
Q Consensus 480 l~~~~~~~l~~l~~L~~L~L~~n~~~~ 506 (589)
+++.++..+..+++|++|++++|.+.+
T Consensus 112 l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 112 LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 765555556677777777777776644
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=1.9e-11 Score=108.78 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=42.0
Q ss_pred CCCCCCEEEeecCCcc--ccchhhcCCCCccEEEecCCccccccccccccccCceeeec
Q 007787 341 LLLLLKYLKLNIPYLK--HLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR 397 (589)
Q Consensus 341 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~ 397 (589)
..++|+.|++++|.++ .+|..+..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELS 72 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECC
Confidence 3477888888888888 7888778888888888888877766 455555555555554
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=3.6e-12 Score=119.43 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=61.0
Q ss_pred hhhHHHHHHhhCCCc-cCcccEEEEcCC--CCccCCcccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCcccc
Q 007787 304 TRQLNQLWIAEGFIP-ETARKLLNLGTI--VLEEYPAGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRC 380 (589)
Q Consensus 304 ~~~L~~l~~~~~~i~-~~ler~L~L~~n--~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~ 380 (589)
..+.++.|...+.+. -.+ +...+.++ .++.+|..++.+++|++|++++|.++.+| .+.++++|++|++++|.+..
T Consensus 7 ~~~~~~~~~~~~~l~~l~l-~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~ 84 (198)
T 1ds9_A 7 IKDAIRIFEERKSVVATEA-EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK 84 (198)
T ss_dssp HHHHHHHHHHTTCCCCTTC-SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS
T ss_pred HHHHHHHHHhcccccCcch-heeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc
Confidence 344555565555554 111 33444444 34455667778888888888888887777 67778888888888887777
Q ss_pred ccccccccccCceeeec
Q 007787 381 TPDSIGKMHELRHLNFR 397 (589)
Q Consensus 381 lp~~~~~L~~L~~L~l~ 397 (589)
+|..+..+++|++|+++
T Consensus 85 l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 85 IENLDAVADTLEELWIS 101 (198)
T ss_dssp CSSHHHHHHHCSEEEEE
T ss_pred ccchhhcCCcCCEEECc
Confidence 77666666677776665
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=9.9e-11 Score=107.33 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=66.6
Q ss_pred cEEEEcCCCCccCCcccCCCC-CCCEEEeecCCccccchhhcCCCCccEEEecCCccccccccc-cccccCceeeec---
Q 007787 323 KLLNLGTIVLEEYPAGINLLL-LLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPDSI-GKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~-~~L~~L~~L~l~--- 397 (589)
+.|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|..+ ..+++|++|+++
T Consensus 22 ~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 22 RELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99 (176)
T ss_dssp EEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred eEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc
Confidence 568888888876654 44444 888888888888776 46777888888888888877777554 777777777777
Q ss_pred CcccCC--cccccCCCCcccccccccC
Q 007787 398 TITLPA--HPGKFCTSLENLNFISVLH 422 (589)
Q Consensus 398 ~~~lp~--~i~~~l~~L~~L~l~~~~~ 422 (589)
...+|. .+. .+++|+.|++.++..
T Consensus 100 i~~~~~~~~l~-~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 100 LVELGDLDPLA-SLKSLTYLCILRNPV 125 (176)
T ss_dssp CCCGGGGGGGG-GCTTCCEEECCSSGG
T ss_pred CCcchhhHhhh-cCCCCCEEEecCCCC
Confidence 233443 455 566666666555443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=1.7e-11 Score=114.76 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=38.5
Q ss_pred CCCEEEeecC--CccccchhhcCCCCccEEEecCCccccccccccccccCceeeec
Q 007787 344 LLKYLKLNIP--YLKHLPASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR 397 (589)
Q Consensus 344 ~Lr~L~L~~~--~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~ 397 (589)
.|+.+.++++ .++.+|..++++++|++|++++|.+..+| .+.++++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~ 78 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLG 78 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECC
Confidence 4555555554 45566668888888999999888887777 77777777777765
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=1e-09 Score=100.61 Aligned_cols=106 Identities=23% Similarity=0.232 Sum_probs=64.8
Q ss_pred CCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCC
Q 007787 439 ELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCF 516 (589)
Q Consensus 439 ~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f 516 (589)
++|+.|+++++. ++ .+|. +..+++|++|++++|.+++.++..++.+++|+.|++++|.+.+..
T Consensus 28 ~~l~~L~l~~n~-----l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-------- 92 (177)
T 2o6r_A 28 SSATRLELESNK-----LQ--SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP-------- 92 (177)
T ss_dssp TTCSEEECCSSC-----CC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------
T ss_pred CCCcEEEeCCCc-----cc--EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC--------
Confidence 455555555542 12 3343 566677777777777776655556677777777777777665332
Q ss_pred CCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 517 PSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 517 ~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+..++.+++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus 93 ------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 93 ------NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 2234566777777777776653333334667777777777765
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=7e-10 Score=101.59 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=85.9
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCccccchhh-cCCCCccEEEecCCccccccc--cccccccCceeeec--
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHLPASL-CNLLNLYTIDMPSSYVRCTPD--SIGKMHELRHLNFR-- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l~~lp~--~~~~L~~L~~L~l~-- 397 (589)
+.|++++|.++.+ ..++.+++|++|++++|.++.+|+.+ +.+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 45 ~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 45 DAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp SEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 7899999999977 68999999999999999999998765 899999999999999999987 79999999999999
Q ss_pred -CcccCCc----ccccCCCCcccccccccC
Q 007787 398 -TITLPAH----PGKFCTSLENLNFISVLH 422 (589)
Q Consensus 398 -~~~lp~~----i~~~l~~L~~L~l~~~~~ 422 (589)
...+|.. +. .+++|+.|++..+..
T Consensus 124 ~i~~~~~~~~~~~~-~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 124 PVTNKKHYRLYVIY-KVPQVRVLDFQKVKL 152 (176)
T ss_dssp GGGGSTTHHHHHHH-HCTTCSEETTEECCH
T ss_pred CCCCcHhHHHHHHH-HCCccceeCCCcCCH
Confidence 3455664 77 899999999766653
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=1.4e-09 Score=99.49 Aligned_cols=97 Identities=25% Similarity=0.315 Sum_probs=78.2
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCcccccccc-ccccccCceeeec---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~--- 397 (589)
+.+++++|.++.+|..+. ++|++|+|++|.|+.+ |..++++++|++|+|++|.+..+|.. +.++++|++|+++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 568999999998888775 8899999999999977 55778899999999999999888876 5788899999888
Q ss_pred CcccCCc-ccccCCCCcccccccccC
Q 007787 398 TITLPAH-PGKFCTSLENLNFISVLH 422 (589)
Q Consensus 398 ~~~lp~~-i~~~l~~L~~L~l~~~~~ 422 (589)
...+|.. +. .+++|++|++.++..
T Consensus 93 l~~l~~~~~~-~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFD-NLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTT-TCTTCSEEECCSSCB
T ss_pred cceeCHHHhc-cccCCCEEEeCCCCc
Confidence 3455554 66 777888887666554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=1.8e-09 Score=98.32 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=78.9
Q ss_pred cEEEEcCCCCccCCcccCCCCCCCEEEeecCCcccc-chhhcCCCCccEEEecCCcccccccc-ccccccCceeeec---
Q 007787 323 KLLNLGTIVLEEYPAGINLLLLLKYLKLNIPYLKHL-PASLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR--- 397 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~--- 397 (589)
+.+++++|.++.+|..+. ++|++|+|++|.|+.+ |..+.++++|++|+|++|.+..+|.. +.++++|++|+++
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 568999999999998774 8899999999999977 55688999999999999999888776 5788999999998
Q ss_pred CcccCCc-ccccCCCCcccccccccC
Q 007787 398 TITLPAH-PGKFCTSLENLNFISVLH 422 (589)
Q Consensus 398 ~~~lp~~-i~~~l~~L~~L~l~~~~~ 422 (589)
...+|.. +. .+++|++|++.++..
T Consensus 90 l~~~~~~~~~-~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFD-NLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTT-TCTTCCEEECCSSCB
T ss_pred cCEeCHHHhc-CCCCCCEEEeCCCCC
Confidence 3445543 66 778888888766654
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=1.7e-09 Score=98.42 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=78.5
Q ss_pred CCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCC
Q 007787 441 LESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSL 519 (589)
Q Consensus 441 L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L 519 (589)
.+.+++++++ |+ .+|. + .++|+.|+|++|.+++..+..|+.+++|++|+|++|.+.+..
T Consensus 11 ~~~l~~s~n~-----l~--~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~----------- 70 (170)
T 3g39_A 11 GTTVDCSGKS-----LA--SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP----------- 70 (170)
T ss_dssp TTEEECTTSC-----CS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-----------
T ss_pred CCEEEeCCCC-----cC--ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-----------
Confidence 4566666653 33 5665 4 378899999999998888888999999999999988886543
Q ss_pred CccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 520 KEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 520 ~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+..+..+++|++|+|++|.+.+..+..|..+++|+.|++++||
T Consensus 71 ---~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 71 ---AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---hhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 2345678899999999998865445558889999999999985
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=2.7e-09 Score=97.52 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=76.1
Q ss_pred CeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCC
Q 007787 442 ESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLK 520 (589)
Q Consensus 442 ~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~ 520 (589)
+.+++++++ |. .+|. +. ++|+.|+|++|.+.+.++..|+.+++|++|+|++|.+.+..
T Consensus 15 ~~l~~~~n~-----l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~------------ 73 (174)
T 2r9u_A 15 TLVNCQNIR-----LA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP------------ 73 (174)
T ss_dssp SEEECCSSC-----CS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------
T ss_pred cEEEeCCCC-----CC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC------------
Confidence 456666542 22 5666 43 78899999999988888888889999999999888886532
Q ss_pred ccccCcccccccceeeEeecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 521 EWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 521 ~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+..+..+++|+.|+|++|.+.+..+..|..+++|+.|++++|+
T Consensus 74 --~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 74 --TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp --TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred --hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 2235678899999999988765434448889999999999876
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=4.1e-08 Score=102.08 Aligned_cols=208 Identities=10% Similarity=0.056 Sum_probs=110.0
Q ss_pred cccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccccc-cccccccCceeeec--CcccCCcccccCCCCc
Q 007787 337 AGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFR--TITLPAHPGKFCTSLE 413 (589)
Q Consensus 337 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~--~~~lp~~i~~~l~~L~ 413 (589)
.+|.+|.+|+.+++++|.++.+|.......+|+.+.+..+ +..++. .|.++++|+.+.+. ...++.... .-.+|+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF-~~~~L~ 251 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAF-RESGIT 251 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTT-TTCCCS
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccc-ccCCcc
Confidence 3555666666666666666666554444566666666533 444432 35566666666664 233333322 224555
Q ss_pred ccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccc
Q 007787 414 NLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKL 491 (589)
Q Consensus 414 ~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l 491 (589)
.+.+ .++. ......++. .+++|+.+.+.++...+..+. .++. |..+++|+.+.|.+ .+.......|.++
T Consensus 252 ~i~l-p~~i-~~I~~~aF~----~c~~L~~l~l~~~~~~~~~~~--~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c 322 (401)
T 4fdw_A 252 TVKL-PNGV-TNIASRAFY----YCPELAEVTTYGSTFNDDPEA--MIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN 322 (401)
T ss_dssp EEEE-ETTC-CEECTTTTT----TCTTCCEEEEESSCCCCCTTC--EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC
T ss_pred EEEe-CCCc-cEEChhHhh----CCCCCCEEEeCCccccCCccc--EECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC
Confidence 5553 1111 111111133 456666666655321000111 2444 66666666666663 3444445566666
Q ss_pred cccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCC-CCCEEEEeCCcHHHHH
Q 007787 492 LHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVK-SLTKLELWWPRFELRE 570 (589)
Q Consensus 492 ~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~-~L~~L~l~~~~~~~~~ 570 (589)
++|+.+.|..+ +.... ...+..+ +|+.+++.+|......+..|..++ +++.|++-... .+
T Consensus 323 ~~L~~l~lp~~-l~~I~--------------~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~---~~ 383 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQIN--------------FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES---VE 383 (401)
T ss_dssp CSCCEEEECTT-CCEEC--------------TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG---HH
T ss_pred CCccEEEECcc-ccEEc--------------HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH---HH
Confidence 66666666332 21111 1235567 899999999877554455677774 78899886644 44
Q ss_pred HHhh
Q 007787 571 RLRK 574 (589)
Q Consensus 571 ~~~~ 574 (589)
.++.
T Consensus 384 ~y~~ 387 (401)
T 4fdw_A 384 KYKN 387 (401)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 4443
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=2.2e-09 Score=108.80 Aligned_cols=220 Identities=16% Similarity=0.109 Sum_probs=126.5
Q ss_pred cEEEEcCCCCccCCcccCC-CCCCCEEEeecCCcc--------------------ccch-hhcC--------CCCccEEE
Q 007787 323 KLLNLGTIVLEEYPAGINL-LLLLKYLKLNIPYLK--------------------HLPA-SLCN--------LLNLYTID 372 (589)
Q Consensus 323 r~L~L~~n~l~~~p~~~~~-l~~Lr~L~L~~~~i~--------------------~lp~-~i~~--------L~~L~~L~ 372 (589)
+.|.++++--..-...+.. +++|+.|+|++|.|. .+|. .+.+ +++|+.|+
T Consensus 28 ~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~ 107 (329)
T 3sb4_A 28 THLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVI 107 (329)
T ss_dssp SEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-C
T ss_pred eEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEE
Confidence 4577766421111112223 899999999999988 2332 3345 67777777
Q ss_pred ecCCcccccccc-ccccccCceeeec---CcccCCc-ccccCCCCcccccccccC--CCCchhh-hhcCcccCCCCCC-e
Q 007787 373 MPSSYVRCTPDS-IGKMHELRHLNFR---TITLPAH-PGKFCTSLENLNFISVLH--PSSCTRD-ILGRLPSEFELLE-S 443 (589)
Q Consensus 373 L~~~~l~~lp~~-~~~L~~L~~L~l~---~~~lp~~-i~~~l~~L~~L~l~~~~~--~~~~~~~-~l~~L~~~l~~L~-~ 443 (589)
|.+ .+..++.. |.++++|+.|+++ ...++.. +. .+.++..+....... ....+.. ++. .+.+|+ .
T Consensus 108 L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~-~~~~l~~l~~~~~~~~~~~~~i~~~~f~----~~~~L~~~ 181 (329)
T 3sb4_A 108 LSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALA-DSVTAIFIPLGSSDAYRFKNRWEHFAFI----EGEPLETT 181 (329)
T ss_dssp BCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSC-TTTCEEEECTTCTHHHHTSTTTTTSCEE----ESCCCEEE
T ss_pred CCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhc-CCCceEEecCcchhhhhccccccccccc----ccccccee
Confidence 776 66666543 6677777777776 2233333 33 444454444222100 0000000 011 233444 3
Q ss_pred EEEeeCCCC----------CCCCcee----cCCC------CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCc
Q 007787 444 LKLVNELKI----------PSQLSSI----VLPE------YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNS 503 (589)
Q Consensus 444 L~l~~~~~l----------p~~L~~L----~lp~------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 503 (589)
+.+...+.+ +.+++.+ .+.. ...+++|+.|+|++|.++......|.++++|+.|++.+|
T Consensus 182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN- 260 (329)
T ss_dssp EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-
T ss_pred EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-
Confidence 333321111 0112222 1100 113789999999999998878888999999999999776
Q ss_pred ccCceeeEecCCCCCCCccccCcccccccc-eeeEeecCCCCCC-ccccccCCCCCEEEEeCCc
Q 007787 504 FIGRKLICRFGCFPSLKEWIVEFEAIPKLE-SLIINPCAHLKRL-PEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 504 ~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~-~L~L~~n~~l~~l-p~~l~~l~~L~~L~l~~~~ 565 (589)
+.... +..+..+++|+ .+++.+ .+ ..+ +..|.++++|+.|+++++.
T Consensus 261 i~~I~--------------~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 261 LKTIG--------------QRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp CCEEC--------------TTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCTTEEEEEECSSC
T ss_pred cceeh--------------HHHhhCChhccEEEEEcc-cc-eEEchhhhhCCccCCEEEeCCCc
Confidence 42211 22456789999 999987 44 444 4678999999999997654
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=6.7e-08 Score=100.48 Aligned_cols=206 Identities=11% Similarity=0.052 Sum_probs=143.9
Q ss_pred cEEEEcCCCCccCCc-ccCCCCCCCEEEeecCCccccc-hhhcCCCCccEEEecCCccccccccccccccCceeeec--C
Q 007787 323 KLLNLGTIVLEEYPA-GINLLLLLKYLKLNIPYLKHLP-ASLCNLLNLYTIDMPSSYVRCTPDSIGKMHELRHLNFR--T 398 (589)
Q Consensus 323 r~L~L~~n~l~~~p~-~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~--~ 398 (589)
+.+.+..+ ++.++. +|.+ .+|+.+.+.. .++.++ .++.++.+|+.+++.+|.+..+|.......+|+.+.+. .
T Consensus 138 ~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l 214 (401)
T 4fdw_A 138 AKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTL 214 (401)
T ss_dssp SEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTC
T ss_pred cEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCch
Confidence 34566554 554443 5556 4799999986 677665 46778999999999999999998775557899999887 4
Q ss_pred cccCCc-ccccCCCCcccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEE
Q 007787 399 ITLPAH-PGKFCTSLENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSL 475 (589)
Q Consensus 399 ~~lp~~-i~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L 475 (589)
..++.. +. .+++|+.+.+..+ . ......++. . .+|+.+.+.. +++ .++. |..+++|+.+.+
T Consensus 215 ~~I~~~aF~-~~~~L~~l~l~~~-l-~~I~~~aF~----~-~~L~~i~lp~------~i~--~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 215 KEIGSQAFL-KTSQLKTIEIPEN-V-STIGQEAFR----E-SGITTVKLPN------GVT--NIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CEECTTTTT-TCTTCCCEECCTT-C-CEECTTTTT----T-CCCSEEEEET------TCC--EECTTTTTTCTTCCEEEE
T ss_pred heehhhHhh-CCCCCCEEecCCC-c-cCccccccc----c-CCccEEEeCC------Ccc--EEChhHhhCCCCCCEEEe
Confidence 445544 45 7888998886442 2 112222143 3 6888888864 344 5666 899999999999
Q ss_pred EeecCC-----CCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCC-ccc
Q 007787 476 ANTELR-----DDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRL-PED 549 (589)
Q Consensus 476 ~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~l-p~~ 549 (589)
.+|.+. ......|.++++|+.+.|. +.+.... ...+..+++|+.+.|..+ + ..+ +..
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~--------------~~aF~~c~~L~~l~lp~~-l-~~I~~~a 341 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG--------------QGLLGGNRKVTQLTIPAN-V-TQINFSA 341 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC--------------TTTTTTCCSCCEEEECTT-C-CEECTTS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh--------------hhhhcCCCCccEEEECcc-c-cEEcHHh
Confidence 988764 2456678899999999996 3332211 124557899999999655 3 344 456
Q ss_pred cccCCCCCEEEEeCCc
Q 007787 550 LWRVKSLTKLELWWPR 565 (589)
Q Consensus 550 l~~l~~L~~L~l~~~~ 565 (589)
|.++ +|+.|.+.++.
T Consensus 342 F~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSSS-CCCEEEECCSS
T ss_pred CCCC-CCCEEEEcCCC
Confidence 8888 99999999864
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=5.8e-08 Score=98.93 Aligned_cols=97 Identities=20% Similarity=0.081 Sum_probs=78.3
Q ss_pred EEEEcCC-CCccCCcccCCCCCCCEEEeec-CCccccc-hhhcCCCCccEEEecCCccccccc-cccccccCceeeec--
Q 007787 324 LLNLGTI-VLEEYPAGINLLLLLKYLKLNI-PYLKHLP-ASLCNLLNLYTIDMPSSYVRCTPD-SIGKMHELRHLNFR-- 397 (589)
Q Consensus 324 ~L~L~~n-~l~~~p~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~-- 397 (589)
.++++++ .++.+|. ++.+.+|++|+|++ |.++.+| ..+++|++|++|+|++|.+..+|. .|.+|++|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3688887 8889998 99999999999996 8999777 468889999999999998887755 57889999999998
Q ss_pred -CcccCCcccccCCCCcccccccccC
Q 007787 398 -TITLPAHPGKFCTSLENLNFISVLH 422 (589)
Q Consensus 398 -~~~lp~~i~~~l~~L~~L~l~~~~~ 422 (589)
...+|..+. ....|+.|++.++..
T Consensus 91 ~l~~~~~~~~-~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTV-QGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTT-CSCCCCEEECCSSCC
T ss_pred ccceeCHHHc-ccCCceEEEeeCCCc
Confidence 456666655 434499998777665
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=8.7e-08 Score=97.63 Aligned_cols=91 Identities=20% Similarity=0.098 Sum_probs=52.8
Q ss_pred cCCCCCCCCCccEEEEEe-ecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEe
Q 007787 460 VLPEYQFPPSLIELSLAN-TELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIIN 538 (589)
Q Consensus 460 ~lp~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~ 538 (589)
.+|.+..+++|+.|+|++ |.+.+.++..|+++++|+.|+|++|.+.+.. |..++.+++|+.|+|+
T Consensus 23 ~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--------------~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--------------PDAFHFTPRLSRLNLS 88 (347)
T ss_dssp TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--------------TTGGGSCSCCCEEECC
T ss_pred ccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC--------------HHHhcCCcCCCEEeCC
Confidence 344444556666666664 6665555566666666777776666665432 3345566666677776
Q ss_pred ecCCCCCCccccccCCCCCEEEEeCCc
Q 007787 539 PCAHLKRLPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 539 ~n~~l~~lp~~l~~l~~L~~L~l~~~~ 565 (589)
+|.+.+..+..+..++ |+.|++.+|+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCC
Confidence 6665433223333333 6667666654
No 149
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.42 E-value=1.9e-07 Score=78.38 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=31.2
Q ss_pred ccchHHHHHHHHHHHHHHhhhhhHHhHhhhcccc
Q 007787 2 TLAYQNLERILKETNYLVRESEKVICTFIMSNIQ 35 (589)
Q Consensus 2 ~~~~~~v~~Wl~~l~~~ayd~ed~ld~~~~~~~~ 35 (589)
+.+|++|+.|+++||++|||+||+||+|.++...
T Consensus 51 ~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 51 EQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4578999999999999999999999999998864
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=2.5e-09 Score=110.18 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=31.4
Q ss_pred cEEEEcCCCCcc-----CCcccC-CCCCCCEEEeecCCccc--cchhhcCCCCccEEEecCCcccc
Q 007787 323 KLLNLGTIVLEE-----YPAGIN-LLLLLKYLKLNIPYLKH--LPASLCNLLNLYTIDMPSSYVRC 380 (589)
Q Consensus 323 r~L~L~~n~l~~-----~p~~~~-~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~ 380 (589)
+.|+|++|.++. +...+. ...+|++|+|++|.++. +..-...+++|+.|+|++|.++.
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence 457777777651 122222 22567777777776652 21112235567777777776543
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.35 E-value=1.7e-09 Score=111.43 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=104.6
Q ss_pred CCCCCEEEeecCCccc-----cchhhc-CCCCccEEEecCCccccc--cccccccccCceeeecCcccCCc----cc---
Q 007787 342 LLLLKYLKLNIPYLKH-----LPASLC-NLLNLYTIDMPSSYVRCT--PDSIGKMHELRHLNFRTITLPAH----PG--- 406 (589)
Q Consensus 342 l~~Lr~L~L~~~~i~~-----lp~~i~-~L~~L~~L~L~~~~l~~l--p~~~~~L~~L~~L~l~~~~lp~~----i~--- 406 (589)
+++|++|+|++|.++. +...+. ..++|++|+|++|.++.. ..-...+++|++|+++...+... +.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999999873 222233 236899999999987542 22234577899999984444321 11
Q ss_pred -ccCCCCcccccccccCCCCchhh---hhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC-CCCCCCccEEEEEeecCC
Q 007787 407 -KFCTSLENLNFISVLHPSSCTRD---ILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE-YQFPPSLIELSLANTELR 481 (589)
Q Consensus 407 -~~l~~L~~L~l~~~~~~~~~~~~---~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~-~~~l~~L~~L~L~~n~l~ 481 (589)
...++|++|++.+|......... ++. .+++|++|+|++|..-..... .++. +...++|+.|+|++|.++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~----~~~~L~~L~Ls~N~l~~~g~~--~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLA----GNTSVTHLSLLHTGLGDEGLE--LLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHH----TCSSCCEEECTTSSCHHHHHH--HHHHHGGGCSCCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHh----cCCCcCEEeCCCCCCCcHHHH--HHHHHHhcCCCcCeEECCCCCCC
Confidence 13578999998877653222222 134 678899999998631000000 2333 566779999999999986
Q ss_pred CCC----CCCcccccccceeEEecCcccCce
Q 007787 482 DDP----MPKPKKLLHLQVLKLKKNSFIGRK 508 (589)
Q Consensus 482 ~~~----~~~l~~l~~L~~L~L~~n~~~~~~ 508 (589)
... ...+...++|++|+|++|.+....
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 432 334556789999999999886543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=1.4e-07 Score=96.40 Aligned_cols=87 Identities=11% Similarity=0.069 Sum_probs=54.8
Q ss_pred CCCCccEEEEEeecCCCCCCCCc---ccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCC
Q 007787 466 FPPSLIELSLANTELRDDPMPKP---KKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAH 542 (589)
Q Consensus 466 ~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~ 542 (589)
.+++|+.|+|.+|.+....+..+ ..+|+|++|+|+.|.+.+... ..++..+..+++|+.|+|++|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----------~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA----------RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----------HHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH----------HHHHhhcccCCcceEEECCCCcC
Confidence 57889999999888743222222 247899999998887754321 01223345688899999998875
Q ss_pred CCCCccccccCCC--CCEEEEeCCc
Q 007787 543 LKRLPEDLWRVKS--LTKLELWWPR 565 (589)
Q Consensus 543 l~~lp~~l~~l~~--L~~L~l~~~~ 565 (589)
.. .++..+.. ..+++++++.
T Consensus 320 ~d---~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 320 SD---EMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp CH---HHHHHHHHHCCSEEECCSBC
T ss_pred CH---HHHHHHHHHcCCEEEecCCc
Confidence 43 22333332 3567887766
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=2.1e-07 Score=95.09 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=50.4
Q ss_pred cccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCC----CccccccCCCCCEEEEeCCc
Q 007787 490 KLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKR----LPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 490 ~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~----lp~~l~~l~~L~~L~l~~~~ 565 (589)
.+|+|++|++.+|.+.+..... -.....+|+|++|+|+.|.+... ++.++.++++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~-----------la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEM-----------FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHH-----------HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHH-----------HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 5799999999888775322000 01123589999999999876542 44455678999999999987
Q ss_pred --HHHHHHHh
Q 007787 566 --FELRERLR 573 (589)
Q Consensus 566 --~~~~~~~~ 573 (589)
....+.+.
T Consensus 319 i~d~~~~~l~ 328 (362)
T 2ra8_A 319 LSDEMKKELQ 328 (362)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 34444444
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=3.5e-06 Score=76.00 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=68.0
Q ss_pred cCCC-CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCc-ccCceeeEecCCCCCCCccccCccc----ccccc
Q 007787 460 VLPE-YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNS-FIGRKLICRFGCFPSLKEWIVEFEA----IPKLE 533 (589)
Q Consensus 460 ~lp~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~f~~L~~l~~~~~~----l~~L~ 533 (589)
.+|. ...-.+|+.|++++|.++..-...+..+++|+.|+|+++. ++...+ ..+.. .++|+
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL--------------~~L~~~~~~~~~L~ 117 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL--------------ERLSQLENLQKSML 117 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH--------------HHHHTCHHHHHHCC
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH--------------HHHHhcccccCCCC
Confidence 5666 3334579999999999887777788899999999998875 443221 12223 35899
Q ss_pred eeeEeecCCCCC-CccccccCCCCCEEEEeCCc
Q 007787 534 SLIINPCAHLKR-LPEDLWRVKSLTKLELWWPR 565 (589)
Q Consensus 534 ~L~L~~n~~l~~-lp~~l~~l~~L~~L~l~~~~ 565 (589)
+|+|++|+.++. --..+.++++|++|++++||
T Consensus 118 ~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 118 EMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp EEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred EEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 999999986543 11246679999999999998
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=5.7e-06 Score=80.27 Aligned_cols=80 Identities=26% Similarity=0.330 Sum_probs=48.2
Q ss_pred CCCCccEEEEEeecCCC--CCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCccccc--ccceeeEeecC
Q 007787 466 FPPSLIELSLANTELRD--DPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIP--KLESLIINPCA 541 (589)
Q Consensus 466 ~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~--~L~~L~L~~n~ 541 (589)
.+++|+.|+|++|.+++ .++..++.+++|+.|+|++|.+.+.. .+..+. +|+.|+|++|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~----------------~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER----------------ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG----------------GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch----------------hhhhcccCCcceEEccCCc
Confidence 34566666666776655 23345566777777777777765432 122222 67777777777
Q ss_pred CCCCCcc-------ccccCCCCCEEEE
Q 007787 542 HLKRLPE-------DLWRVKSLTKLEL 561 (589)
Q Consensus 542 ~l~~lp~-------~l~~l~~L~~L~l 561 (589)
+.+.+|. .+..+|+|+.|+=
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CccccCcchhHHHHHHHHCcccCeECC
Confidence 7655542 2456777777653
No 156
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.67 E-value=9.1e-05 Score=76.86 Aligned_cols=141 Identities=14% Similarity=0.080 Sum_probs=91.6
Q ss_pred CCCccccchhhHHHHHHHH-Hc---C---CCCceEEEEEE---------------e---------eCCceEEEEEE--eC
Q 007787 92 RDNMMSLQDDAMVELLDQL-IE---G---PLQLSVVAIID---------------S---------FILIVHAWVSF--DT 138 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L-~~---~---~~~~~vi~IvG---------------~---------F~~~~~~wv~v--~~ 138 (589)
+..++||+.+ .+++.+++ .. + ....-+|+|+| . |+ +..+|+.. ..
T Consensus 21 p~~l~gR~~e-l~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGE-AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLT-VKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHH-HHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCC
T ss_pred CCCCCChHHH-HHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCc-eeEEEEECCCCC
Confidence 4689999999 99999988 42 2 22333344488 1 12 13445544 56
Q ss_pred CHHHHHHHHHHHhCCCCccccccccCHHHHHHHHHHHcC--CceEEEEEecCCCh--------hhHHHHhhhcCCC---C
Q 007787 139 DPGTMLDNILKYVMPQSAFREILYKDFEKRKTALHDYLK--NKRYLIVLYDVFTN--------DVWDYLGEALPDH---Q 205 (589)
Q Consensus 139 ~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~--------~~w~~l~~~l~~~---~ 205 (589)
+...+...|+.+++.... ....+...+...+.+.+. +++++|||||+|.. +.+..+...+... +
T Consensus 99 ~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp SHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CHHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 788899999999865432 012345566677777765 68999999999763 3344443333211 2
Q ss_pred --CCcEEEEecccCc-----------E-------EecCCCChHHHHHhhccc
Q 007787 206 --NGSRVLVILFDDE-----------I-------FNLCILENEDMINLDSVP 237 (589)
Q Consensus 206 --~gs~IivTTR~~~-----------v-------~~l~~L~~~~~~~Lf~~~ 237 (589)
....||+||+... + +++.+++.++++++|...
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQR 227 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHH
Confidence 3445787886432 1 899999999999999754
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=1.4e-05 Score=73.27 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=29.3
Q ss_pred cEEEEcCC-CCc-----cCCcccCCCCCCCEEEeecCCcc-----ccchhhcCCCCccEEEecCCccc
Q 007787 323 KLLNLGTI-VLE-----EYPAGINLLLLLKYLKLNIPYLK-----HLPASLCNLLNLYTIDMPSSYVR 379 (589)
Q Consensus 323 r~L~L~~n-~l~-----~~p~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~ 379 (589)
+.|+|++| .+. .+...+...++|++|+|++|.|. .+...+...++|++|+|++|.++
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 44566665 544 23334445555666666666554 23333444455666666665543
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.61 E-value=0.00026 Score=73.14 Aligned_cols=201 Identities=17% Similarity=0.168 Sum_probs=108.0
Q ss_pred cccCCCCCCCEEEeecCCccccch-hhcCCCCccEEEecCCcccccc-ccccccccCceeeec--CcccCCcccccCCCC
Q 007787 337 AGINLLLLLKYLKLNIPYLKHLPA-SLCNLLNLYTIDMPSSYVRCTP-DSIGKMHELRHLNFR--TITLPAHPGKFCTSL 412 (589)
Q Consensus 337 ~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~--~~~lp~~i~~~l~~L 412 (589)
.+|.++.+|+.+.+..+ +..++. .+.++.+|+.+.+..+ +..++ ..+.++..|+.+.+. ...+..... ..++|
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~-~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFAL-SKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTT-TTCCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhc-ccCCC
Confidence 46777888888888654 344443 4566778888877665 33332 346667777776665 222222233 34555
Q ss_pred cccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCC-CCC-------CCCcee-----cCCC--CCCCCCccEEEEEe
Q 007787 413 ENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNEL-KIP-------SQLSSI-----VLPE--YQFPPSLIELSLAN 477 (589)
Q Consensus 413 ~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~-~lp-------~~L~~L-----~lp~--~~~l~~L~~L~L~~ 477 (589)
+.+.+..... .....++. .+.+|+.+.+..+- .++ +.++.+ .++. +..+.+|+.+.+..
T Consensus 233 ~~i~ip~~~~--~i~~~~f~----~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 233 KNIIIPDSFT--ELGKSVFY----GCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CEEEECTTCC--EECSSTTT----TCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT
T ss_pred ceEEECCCce--eccccccc----ccccceeEEcCCCcceeeccccccccccceeccCceeecccccccccccccccccc
Confidence 5554322111 00000022 45566666665421 000 122222 3444 56667777777654
Q ss_pred ecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCC-ccccccCCCC
Q 007787 478 TELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRL-PEDLWRVKSL 556 (589)
Q Consensus 478 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~l-p~~l~~l~~L 556 (589)
+ +.......|.++.+|+.+.|.+ .+... . ...+..+.+|+.+++..+ +..+ ...|.++++|
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I----~----------~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPY-LVEEI----G----------KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINL 368 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCT-TCCEE----C----------TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTC
T ss_pred c-cceechhhhcCCCCCCEEEeCC-cccEE----h----------HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCC
Confidence 4 3333445566777777777632 22111 0 123456788888888755 3344 3468888999
Q ss_pred CEEEEeCC
Q 007787 557 TKLELWWP 564 (589)
Q Consensus 557 ~~L~l~~~ 564 (589)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 99988654
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.60 E-value=1.5e-05 Score=73.09 Aligned_cols=113 Identities=13% Similarity=-0.019 Sum_probs=80.1
Q ss_pred CcccCCCCCCCEEEeecC-Ccc-----ccchhhcCCCCccEEEecCCcccc-----ccccccccccCceeeecCcc----
Q 007787 336 PAGINLLLLLKYLKLNIP-YLK-----HLPASLCNLLNLYTIDMPSSYVRC-----TPDSIGKMHELRHLNFRTIT---- 400 (589)
Q Consensus 336 p~~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----lp~~~~~L~~L~~L~l~~~~---- 400 (589)
...+...+.|++|+|++| .+. .+...+...++|++|+|++|.++. +...+...++|++|+++...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345677899999999999 886 355667778999999999998753 44556667899999999333
Q ss_pred ----cCCcccccCCCCccccc--ccccCCCCchhhhhcCcccCCCCCCeEEEeeCC
Q 007787 401 ----LPAHPGKFCTSLENLNF--ISVLHPSSCTRDILGRLPSEFELLESLKLVNEL 450 (589)
Q Consensus 401 ----lp~~i~~~l~~L~~L~l--~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~ 450 (589)
+...+. ..++|++|++ ..+......... +...-...++|++|++++|.
T Consensus 109 g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~-l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQ-SNTSLIELRIDNQSQPLGNNVEME-IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHH-HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHH-HHHHHHhCCCcCEEeccCCC
Confidence 334466 7789999998 555553333222 22111156889999998863
No 160
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.57 E-value=0.00015 Score=73.28 Aligned_cols=161 Identities=7% Similarity=0.113 Sum_probs=101.3
Q ss_pred CCCCCccccchhhHHHHHHHHHcCCCCceEEEEEE-----------eeCC-ceEEEEEE-eC-------CHHHHHHHHHH
Q 007787 90 LQRDNMMSLQDDAMVELLDQLIEGPLQLSVVAIID-----------SFIL-IVHAWVSF-DT-------DPGTMLDNILK 149 (589)
Q Consensus 90 ~~~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG-----------~F~~-~~~~wv~v-~~-------~~~~i~~~il~ 149 (589)
.....++||+.+ .+++.+++..+ +++.|+| +|-. ...+|+.. .. +...+.+.+..
T Consensus 9 ~~~~~~~gR~~e-l~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (350)
T 2qen_A 9 TRREDIFDREEE-SRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQS 83 (350)
T ss_dssp CSGGGSCSCHHH-HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHH
T ss_pred CChHhcCChHHH-HHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHH
Confidence 345679999999 99999998753 5888999 2210 01344444 22 45667777766
Q ss_pred HhCCC---------------CccccccccCHHHHHHHHHHHcCC-ceEEEEEecCCChh---------hHHHHhhhcCCC
Q 007787 150 YVMPQ---------------SAFREILYKDFEKRKTALHDYLKN-KRYLIVLYDVFTND---------VWDYLGEALPDH 204 (589)
Q Consensus 150 ~l~~~---------------~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDDvw~~~---------~w~~l~~~l~~~ 204 (589)
.+... ... .....+..++...+.+.... ++++||+||++... .+..+......
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~- 161 (350)
T 2qen_A 84 TISPFQKFQSKFKISLNLKFLTL-EPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS- 161 (350)
T ss_dssp HSCSHHHHHHHHTCCCCCGGGTS-CGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHhHhhhceeEEEecceee-ccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-
Confidence 55420 000 01123556666777666653 38999999997632 23444333222
Q ss_pred CCCcEEEEecccC---------------------cEEecCCCChHHHHHhhcccc--CCCCCC----------CCCCchh
Q 007787 205 QNGSRVLVILFDD---------------------EIFNLCILENEDMINLDSVPA--TPLRAT----------YQERPLV 251 (589)
Q Consensus 205 ~~gs~IivTTR~~---------------------~v~~l~~L~~~~~~~Lf~~~a--~~~~~~----------c~glPla 251 (589)
..+.++|+|++.. ..+++.+|+.+++.+++.... .+.... |+|.|++
T Consensus 162 ~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 162 LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHH
T ss_pred cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH
Confidence 2477888886542 128999999999999987642 111111 9999999
Q ss_pred hhcccc
Q 007787 252 CLYYGS 257 (589)
Q Consensus 252 i~~~g~ 257 (589)
+..++.
T Consensus 242 l~~~~~ 247 (350)
T 2qen_A 242 LVVFGV 247 (350)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988775
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.37 E-value=0.00015 Score=70.28 Aligned_cols=55 Identities=22% Similarity=0.089 Sum_probs=30.6
Q ss_pred cEEEEcCCCCccC---CcccCCCCCCCEEEeecCCccccchhhcCCC--CccEEEecCCcc
Q 007787 323 KLLNLGTIVLEEY---PAGINLLLLLKYLKLNIPYLKHLPASLCNLL--NLYTIDMPSSYV 378 (589)
Q Consensus 323 r~L~L~~n~l~~~---p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~l 378 (589)
+.|+|++|.++.+ |..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++|.+
T Consensus 173 ~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTT
T ss_pred CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcC
Confidence 4566666666532 344445666666666666666442 233333 666666666655
No 162
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.22 E-value=0.00027 Score=71.58 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=95.1
Q ss_pred CCCCccccchhhHHHHHHHHHcCCCCceEEEEEE---------------eeCCceEEEEEE-eC------CHHHHHHHHH
Q 007787 91 QRDNMMSLQDDAMVELLDQLIEGPLQLSVVAIID---------------SFILIVHAWVSF-DT------DPGTMLDNIL 148 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG---------------~F~~~~~~wv~v-~~------~~~~i~~~il 148 (589)
....++||+.+ .+++.+ +.. +++.|+| .... ..+|+.. .+ +...+...+.
T Consensus 11 ~~~~~~gR~~e-l~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 11 NRKDFFDREKE-IEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL-PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp SGGGSCCCHHH-HHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC-CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred CHHHhcChHHH-HHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC-CEEEEEchhhccccCCCHHHHHHHHH
Confidence 45679999999 999999 643 5899999 2221 3456665 32 3455555544
Q ss_pred HHhCC-------------CC-c--ccc----c-----cccCHHHHHHHHHHHcCCceEEEEEecCCCh------hhHHHH
Q 007787 149 KYVMP-------------QS-A--FRE----I-----LYKDFEKRKTALHDYLKNKRYLIVLYDVFTN------DVWDYL 197 (589)
Q Consensus 149 ~~l~~-------------~~-~--~~~----~-----~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~------~~w~~l 197 (589)
..+.. .. + .+. . .......+...+.+.-+ ++++||+||++.. +.+..+
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 43310 00 0 000 0 12345556666655433 4999999999652 223333
Q ss_pred hhhcCCCCCCcEEEEecccC---------------------cEEecCCCChHHHHHhhccccC--CCC-CC-------CC
Q 007787 198 GEALPDHQNGSRVLVILFDD---------------------EIFNLCILENEDMINLDSVPAT--PLR-AT-------YQ 246 (589)
Q Consensus 198 ~~~l~~~~~gs~IivTTR~~---------------------~v~~l~~L~~~~~~~Lf~~~a~--~~~-~~-------c~ 246 (589)
.... ....+.++|+|+|.. ..+++.+|+.+++.+++...+- +.. .. |+
T Consensus 162 ~~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~ 240 (357)
T 2fna_A 162 AYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIG 240 (357)
T ss_dssp HHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHC
T ss_pred HHHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhC
Confidence 3222 222467888888753 1288999999999999886421 111 11 99
Q ss_pred CCchhhhcccc
Q 007787 247 ERPLVCLYYGS 257 (589)
Q Consensus 247 glPlai~~~g~ 257 (589)
|.|+++..++.
T Consensus 241 G~P~~l~~~~~ 251 (357)
T 2fna_A 241 GIPGWLTYFGF 251 (357)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999988775
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.13 E-value=0.00043 Score=62.28 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=46.6
Q ss_pred cEEEEcCCCCc-cCCcccCCCCCCCEEEeecCC-ccc-cchhhcCC----CCccEEEecCC-ccccc-cccccccccCce
Q 007787 323 KLLNLGTIVLE-EYPAGINLLLLLKYLKLNIPY-LKH-LPASLCNL----LNLYTIDMPSS-YVRCT-PDSIGKMHELRH 393 (589)
Q Consensus 323 r~L~L~~n~l~-~~p~~~~~l~~Lr~L~L~~~~-i~~-lp~~i~~L----~~L~~L~L~~~-~l~~l-p~~~~~L~~L~~ 393 (589)
+.||+++|.++ .-...+..+++|+.|+|++|. |+. --..++.+ ++|++|+|++| .++.- -..+.++++|++
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 45888888876 333456778888888888874 651 11234443 36888888887 56432 123445566666
Q ss_pred eeec
Q 007787 394 LNFR 397 (589)
Q Consensus 394 L~l~ 397 (589)
|+++
T Consensus 144 L~L~ 147 (176)
T 3e4g_A 144 LFLS 147 (176)
T ss_dssp EEEE
T ss_pred EECC
Confidence 6665
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.08 E-value=0.0058 Score=62.85 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=30.5
Q ss_pred CcccccccceeeEeecCCCCCCc-cccccCCCCCEEEEeCCcH
Q 007787 525 EFEAIPKLESLIINPCAHLKRLP-EDLWRVKSLTKLELWWPRF 566 (589)
Q Consensus 525 ~~~~l~~L~~L~L~~n~~l~~lp-~~l~~l~~L~~L~l~~~~~ 566 (589)
.+..+.+|+.+.|..+ ...++ ..|.++++|+.+++.++..
T Consensus 329 aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred HhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCcee
Confidence 3557889999999654 34454 5688999999999998763
No 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.04 E-value=0.0023 Score=65.46 Aligned_cols=141 Identities=14% Similarity=0.006 Sum_probs=96.1
Q ss_pred CCccccchhhHHHHHHHHHc--CCCCceEEEEEE---------------ee----C------CceEEEEEE--eC-CHHH
Q 007787 93 DNMMSLQDDAMVELLDQLIE--GPLQLSVVAIID---------------SF----I------LIVHAWVSF--DT-DPGT 142 (589)
Q Consensus 93 ~~~vGr~~~~~~~i~~~L~~--~~~~~~vi~IvG---------------~F----~------~~~~~wv~v--~~-~~~~ 142 (589)
..++||+.+ .+++.+++.. .....+.+-|+| .. . ++..+|+.. .. +...
T Consensus 20 ~~l~gr~~~-~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 20 KEIPFREDI-LRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp SSCTTCHHH-HHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCChHHH-HHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 689999999 9999988864 233456888999 11 0 224555554 34 7888
Q ss_pred HHHHHHHHhCCCCccccccccCHHHHHHHHHHHcCCceEEEEEecCCChhh---HHH-HhhhcCCCCCCcEEEEecccCc
Q 007787 143 MLDNILKYVMPQSAFREILYKDFEKRKTALHDYLKNKRYLIVLYDVFTNDV---WDY-LGEALPDHQNGSRVLVILFDDE 218 (589)
Q Consensus 143 i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~~~---w~~-l~~~l~~~~~gs~IivTTR~~~ 218 (589)
+...++.++..... + ....+...+...+.+.+..++.+|||||++.... .+. +...+... .+.+||+||+...
T Consensus 99 ~~~~l~~~l~~~~~-~-~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 99 VLSSLAGKLTGFSV-P-KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHCSCC-C-SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHHhcCCCC-C-CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 88999988843211 0 1223446677788888888777999999976531 222 22222222 6788899988752
Q ss_pred ---------------EEecCCCChHHHHHhhccc
Q 007787 219 ---------------IFNLCILENEDMINLDSVP 237 (589)
Q Consensus 219 ---------------v~~l~~L~~~~~~~Lf~~~ 237 (589)
++.+.+++.++..+++...
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKY 209 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 2899999999999999886
No 166
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.89 E-value=0.0018 Score=66.11 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=92.4
Q ss_pred CCCccccchhhHHHHHHHHHcC--CCCceEEEEEE-------------------eeC-CceEEEEEE--eCCHHHHHHHH
Q 007787 92 RDNMMSLQDDAMVELLDQLIEG--PLQLSVVAIID-------------------SFI-LIVHAWVSF--DTDPGTMLDNI 147 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~--~~~~~vi~IvG-------------------~F~-~~~~~wv~v--~~~~~~i~~~i 147 (589)
+..++||+.+ .+++.+++... ......+.|+| .++ ++..+|+.. ..+...+...+
T Consensus 19 p~~~~gr~~e-~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 19 PDELPHREDQ-IRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CSCCTTCHHH-HHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCChHHH-HHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 4689999999 99999988742 33456888999 221 224556554 45667788888
Q ss_pred HHHhCCCCccccccccCHHHHHHHHHHHcC--CceEEEEEecCCCh------hhHHHHhhhcCC-CCCCcEEEEecccCc
Q 007787 148 LKYVMPQSAFREILYKDFEKRKTALHDYLK--NKRYLIVLYDVFTN------DVWDYLGEALPD-HQNGSRVLVILFDDE 218 (589)
Q Consensus 148 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~------~~w~~l~~~l~~-~~~gs~IivTTR~~~ 218 (589)
+.++..... ....+..+....+.+.+. +++.+|||||++.. +.+..+...+.. ...+..+|+||+...
T Consensus 98 ~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 98 LESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 877754322 122345555666666664 45899999999653 344444444322 233556677776542
Q ss_pred ----------------EEecCCCChHHHHHhhccc
Q 007787 219 ----------------IFNLCILENEDMINLDSVP 237 (589)
Q Consensus 219 ----------------v~~l~~L~~~~~~~Lf~~~ 237 (589)
++.+.+++.++..+++...
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~ 209 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKR 209 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHH
Confidence 2899999999999999875
No 167
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.88 E-value=0.0036 Score=59.00 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=84.5
Q ss_pred CCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCc---------------
Q 007787 92 RDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSA--------------- 156 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~--------------- 156 (589)
..+++|++.. ++.+..++..+. ...++-|+|.=. .....+.+.+.+.+.....
T Consensus 22 ~~~~~g~~~~-~~~l~~~l~~~~-~~~~~ll~G~~G----------~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 22 FADVVGQEHV-LTALANGLSLGR-IHHAYLFSGTRG----------VGKTSIARLLAKGLNCETGITATPCGVCDNCREI 89 (250)
T ss_dssp GGGCCSCHHH-HHHHHHHHHHTC-CCSEEEEECSTT----------SCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred HHHHhCcHHH-HHHHHHHHHcCC-CCeEEEEECCCC----------CCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3469999999 999999987653 234677888111 1234455555544432110
Q ss_pred -------ccccc--ccCHHHHHHHHHHHc-----CCceEEEEEecCCC--hhhHHHHhhhcCCCCCCcEEEEecccCcE-
Q 007787 157 -------FREIL--YKDFEKRKTALHDYL-----KNKRYLIVLYDVFT--NDVWDYLGEALPDHQNGSRVLVILFDDEI- 219 (589)
Q Consensus 157 -------~~~~~--~~~~~~~~~~l~~~L-----~~kr~LlVLDDvw~--~~~w~~l~~~l~~~~~gs~IivTTR~~~v- 219 (589)
..... ..........+.+.+ .+++.+||+||++. ...++.+...+.....+.++|+||+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000 001112222333332 34679999999954 46788887777665667888888866432
Q ss_pred ----------EecCCCChHHHHHhhccccC
Q 007787 220 ----------FNLCILENEDMINLDSVPAT 239 (589)
Q Consensus 220 ----------~~l~~L~~~~~~~Lf~~~a~ 239 (589)
+++.+++.++..+++.+.+.
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Confidence 89999999999999987653
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.61 E-value=0.0097 Score=61.16 Aligned_cols=186 Identities=12% Similarity=0.123 Sum_probs=110.0
Q ss_pred cccCCCCCCCEEEeecCCccccchhhcCCCCccEEEecCCccccc-cccccccccCceeeec--CcccCCc-ccccCCCC
Q 007787 337 AGINLLLLLKYLKLNIPYLKHLPASLCNLLNLYTIDMPSSYVRCT-PDSIGKMHELRHLNFR--TITLPAH-PGKFCTSL 412 (589)
Q Consensus 337 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~--~~~lp~~-i~~~l~~L 412 (589)
.++.++..|+.+.+..+. ..+........+|+.+.+..+ +..+ ...+..+.+|+.+.+. ...++.. +. .+..|
T Consensus 202 ~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~-~~~~l 278 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSL-YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFY-NCSGL 278 (394)
T ss_dssp TTTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTT-TCTTC
T ss_pred hhhccccccceeecCCCc-eEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccc-ccccc
Confidence 356677888877776543 233333444567777777554 2233 2346667777777776 2223322 33 55666
Q ss_pred cccccccccCCCCchhhhhcCcccCCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCccc
Q 007787 413 ENLNFISVLHPSSCTRDILGRLPSEFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKK 490 (589)
Q Consensus 413 ~~L~l~~~~~~~~~~~~~l~~L~~~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~ 490 (589)
+.+...... .+..++. .+.+|+.+.+.. +++ .++. |..+.+|+.++|..+ ++.....+|.+
T Consensus 279 ~~~~~~~~~----i~~~~F~----~~~~L~~i~l~~------~i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 341 (394)
T 4fs7_A 279 KKVIYGSVI----VPEKTFY----GCSSLTEVKLLD------SVK--FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG 341 (394)
T ss_dssp CEEEECSSE----ECTTTTT----TCTTCCEEEECT------TCC--EECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred ceeccCcee----ecccccc----cccccccccccc------ccc--eechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence 655432211 1111132 567888887754 344 5555 778888888888644 44455667888
Q ss_pred ccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeEeecCCCCCCccccccCCCCCEE
Q 007787 491 LLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLIINPCAHLKRLPEDLWRVKSLTKL 559 (589)
Q Consensus 491 l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L~~n~~l~~lp~~l~~l~~L~~L 559 (589)
+.+|+.+.+..+ +.... ...+..+++|+.+++..+- ..+...|.++++|+.+
T Consensus 342 c~~L~~i~lp~~-l~~I~--------------~~aF~~C~~L~~i~lp~~~--~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIG--------------ANAFQGCINLKKVELPKRL--EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEEC--------------TTTBTTCTTCCEEEEEGGG--GGGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECcc-ccEeh--------------HHHhhCCCCCCEEEECCCC--EEhhheecCCCCCcEE
Confidence 888888888543 32111 1245567888888887653 3445678888888765
No 169
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.56 E-value=0.0071 Score=61.65 Aligned_cols=142 Identities=13% Similarity=0.030 Sum_probs=92.6
Q ss_pred CCCccccchhhHHHHHHHHHcC--CCCceEEEEEE---------------ee---------CCceEEEEEE--eCCHHHH
Q 007787 92 RDNMMSLQDDAMVELLDQLIEG--PLQLSVVAIID---------------SF---------ILIVHAWVSF--DTDPGTM 143 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~--~~~~~vi~IvG---------------~F---------~~~~~~wv~v--~~~~~~i 143 (589)
++.++||+.+ .+++.+++... ......+.|+| .. + +..+|+.. ..+...+
T Consensus 18 p~~~~gr~~~-~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAE-LRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVL-VKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHH-HHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCC-EEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCC-eEEEEEECCcCCCHHHH
Confidence 4689999999 99999998542 33456788899 22 2 12333333 4567788
Q ss_pred HHHHHHHhCCCCccccccccCHHHHHHHHHHHcC--CceEEEEEecCCChh----hHHHHhhhcC---CC--CCCcEEEE
Q 007787 144 LDNILKYVMPQSAFREILYKDFEKRKTALHDYLK--NKRYLIVLYDVFTND----VWDYLGEALP---DH--QNGSRVLV 212 (589)
Q Consensus 144 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~~----~w~~l~~~l~---~~--~~gs~Iiv 212 (589)
...++.++..... ....+..++...+.+.+. +++.+|||||+.... .-+.+...+. .. ..+..+|.
T Consensus 96 ~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 96 ASAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 8999999865432 123345666777777774 468999999997653 2233332222 11 34567777
Q ss_pred ecccCc----------------EEecCCCChHHHHHhhcccc
Q 007787 213 ILFDDE----------------IFNLCILENEDMINLDSVPA 238 (589)
Q Consensus 213 TTR~~~----------------v~~l~~L~~~~~~~Lf~~~a 238 (589)
||+... ++.+.+++.++..+++...+
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 776652 28899999999999988763
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.40 E-value=0.021 Score=58.52 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=48.5
Q ss_pred cCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEecCcccCceeeEecCCCCCCCccccCcccccccceeeE
Q 007787 460 VLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLKKNSFIGRKLICRFGCFPSLKEWIVEFEAIPKLESLII 537 (589)
Q Consensus 460 ~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~f~~L~~l~~~~~~l~~L~~L~L 537 (589)
.++. |..+.+|+.+.|..+ ++.....+|.++.+|+.+.|.. .+.... ...+..+++|+.+++
T Consensus 301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~--------------~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIP--------------ESAFSNCTALNNIEY 364 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCC--------------GGGGTTCTTCCEEEE
T ss_pred ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEh--------------HhHhhCCCCCCEEEE
Confidence 4555 677777777777654 3334455677777787777732 222111 124667889999999
Q ss_pred eecCCCCCCccccccCCCCCEEEEeCC
Q 007787 538 NPCAHLKRLPEDLWRVKSLTKLELWWP 564 (589)
Q Consensus 538 ~~n~~l~~lp~~l~~l~~L~~L~l~~~ 564 (589)
.++... ...+....+|+.+.+..+
T Consensus 365 ~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 365 SGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp SSCHHH---HHTCBCCCCC--------
T ss_pred CCceee---hhhhhccCCCCEEEeCCC
Confidence 876532 134666788888877554
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.30 E-value=0.066 Score=54.38 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=21.3
Q ss_pred cccccccceeeEeecCCCCCCc-cccccCCCCCEEEEe
Q 007787 526 FEAIPKLESLIINPCAHLKRLP-EDLWRVKSLTKLELW 562 (589)
Q Consensus 526 ~~~l~~L~~L~L~~n~~l~~lp-~~l~~l~~L~~L~l~ 562 (589)
+..+.+|+.+.|..+ ++.++ ..|.++++|+++.+.
T Consensus 306 F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred hcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 445677777777543 23333 346677777777663
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.25 E-value=0.022 Score=58.01 Aligned_cols=143 Identities=8% Similarity=0.061 Sum_probs=94.5
Q ss_pred CCCccccchhhHHHHHHHHHc----CCCCceEEEEEE---------------eeC---CceEEEEEE--eCCHHHHHHHH
Q 007787 92 RDNMMSLQDDAMVELLDQLIE----GPLQLSVVAIID---------------SFI---LIVHAWVSF--DTDPGTMLDNI 147 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~----~~~~~~vi~IvG---------------~F~---~~~~~wv~v--~~~~~~i~~~i 147 (589)
++.++||+.+ .+++.+++.. .....+.+.|+| ... ++..+|+.. ..+...+...+
T Consensus 16 p~~l~gr~~~-~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 16 PKRLPHREQQ-LQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CSCCTTCHHH-HHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCCChHHH-HHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 3679999999 9999998865 222334888999 221 113334433 45577888999
Q ss_pred HHHhCCCCccccccccCHHHHHHHHHHHcC--CceEEEEEecCCCh--hhHHHHhhhcCCCC----CCcEEEEecccCc-
Q 007787 148 LKYVMPQSAFREILYKDFEKRKTALHDYLK--NKRYLIVLYDVFTN--DVWDYLGEALPDHQ----NGSRVLVILFDDE- 218 (589)
Q Consensus 148 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDvw~~--~~w~~l~~~l~~~~----~gs~IivTTR~~~- 218 (589)
+.++..... ....+...+...+.+.+. +++.+|||||++.. .....+...+.... .+..||+||+...
T Consensus 95 ~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 95 ARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 988865332 122345556666666654 56889999999764 45666655553311 4667888877652
Q ss_pred ---------------EEecCCCChHHHHHhhcccc
Q 007787 219 ---------------IFNLCILENEDMINLDSVPA 238 (589)
Q Consensus 219 ---------------v~~l~~L~~~~~~~Lf~~~a 238 (589)
++.+.+++.++..+++...+
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 28999999999999887764
No 173
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.95 E-value=0.0093 Score=50.79 Aligned_cols=54 Identities=24% Similarity=0.208 Sum_probs=43.6
Q ss_pred cEEEEcCCCCc--cCCcccCCCCCCCEEEeecCCccccchh-hcCCCCccEEEecCCcc
Q 007787 323 KLLNLGTIVLE--EYPAGINLLLLLKYLKLNIPYLKHLPAS-LCNLLNLYTIDMPSSYV 378 (589)
Q Consensus 323 r~L~L~~n~l~--~~p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l 378 (589)
..++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 45788888888 8887644 4689999999999988865 46788999999998865
No 174
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.55 E-value=0.089 Score=48.42 Aligned_cols=134 Identities=10% Similarity=0.015 Sum_probs=84.7
Q ss_pred CCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCc---ccc---ccccCH
Q 007787 92 RDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSA---FRE---ILYKDF 165 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~---~~~---~~~~~~ 165 (589)
..+++|++.. .+++.+++.... ...+-|+|.=+ .....+.+.+.+.+..... ... ......
T Consensus 16 ~~~~~g~~~~-~~~l~~~l~~~~--~~~~ll~G~~G----------~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 16 LDEVVGQDEV-IQRLKGYVERKN--IPHLLFSGPPG----------TGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp GGGCCSCHHH-HHHHHHHHHTTC--CCCEEEECSTT----------SSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred HHHHcCcHHH-HHHHHHHHhCCC--CCeEEEECCCC----------CCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence 3578999999 999999997653 22367778211 2234555566555422110 000 112233
Q ss_pred HHHHHHHHHHc------CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccCcE-----------EecCCCC
Q 007787 166 EKRKTALHDYL------KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDDEI-----------FNLCILE 226 (589)
Q Consensus 166 ~~~~~~l~~~L------~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~~v-----------~~l~~L~ 226 (589)
..+...+.... .+++.+||+||++.. ..++.+...+.....+.++|+||+.... +.+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~ 162 (226)
T 2chg_A 83 DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (226)
T ss_dssp HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCC
Confidence 34444444443 257899999999764 4566666666555567888888876532 8999999
Q ss_pred hHHHHHhhcccc
Q 007787 227 NEDMINLDSVPA 238 (589)
Q Consensus 227 ~~~~~~Lf~~~a 238 (589)
.++..+++.+.+
T Consensus 163 ~~~~~~~l~~~~ 174 (226)
T 2chg_A 163 KEAMKKRLLEIC 174 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 175
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.98 E-value=0.16 Score=51.54 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=40.9
Q ss_pred CCCCCCeEEEeeCCCCCCCCceecCCC--CCCCCCccEEEEEeecCCCCCCCCcccccccceeEEe
Q 007787 437 EFELLESLKLVNELKIPSQLSSIVLPE--YQFPPSLIELSLANTELRDDPMPKPKKLLHLQVLKLK 500 (589)
Q Consensus 437 ~l~~L~~L~l~~~~~lp~~L~~L~lp~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 500 (589)
.+.+|+.+.+.. +++ .++. |..+.+|+.+.+.++.++......|.++.+|+.+.|.
T Consensus 261 ~~~~l~~i~l~~------~i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 261 NCTALKTLNFYA------KVK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECC------CCS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred eeehhccccccc------cce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 456666666643 333 4555 7888899999998887766666788888999998884
No 176
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.10 E-value=0.049 Score=46.23 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=41.9
Q ss_pred CEEEeecCCcc--ccchhhcCCCCccEEEecCCcccccccc-ccccccCceeeec
Q 007787 346 KYLKLNIPYLK--HLPASLCNLLNLYTIDMPSSYVRCTPDS-IGKMHELRHLNFR 397 (589)
Q Consensus 346 r~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~ 397 (589)
..++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. |..+++|+.|+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence 47888999998 8886543 4799999999999999776 6778899999887
No 177
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.06 E-value=0.15 Score=50.31 Aligned_cols=134 Identities=10% Similarity=0.087 Sum_probs=82.3
Q ss_pred CCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCc---ccc---ccccCH
Q 007787 92 RDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSA---FRE---ILYKDF 165 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~---~~~---~~~~~~ 165 (589)
-.+++|++.. .+.+.+++..+. ...+-++|.=+ .....+.+.+.+.+..... ... .+....
T Consensus 20 ~~~~~g~~~~-~~~l~~~l~~~~--~~~~ll~G~~G----------~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 86 (323)
T 1sxj_B 20 LSDIVGNKET-IDRLQQIAKDGN--MPHMIISGMPG----------IGKTTSVHCLAHELLGRSYADGVLELNASDDRGI 86 (323)
T ss_dssp GGGCCSCTHH-HHHHHHHHHSCC--CCCEEEECSTT----------SSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH
T ss_pred HHHHHCCHHH-HHHHHHHHHcCC--CCeEEEECcCC----------CCHHHHHHHHHHHhcCCcccCCEEEecCccccCh
Confidence 3568999999 999999987654 22266777111 2244555555555422110 000 011223
Q ss_pred HHHHHHHHHHc-------CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccCcE-----------EecCCC
Q 007787 166 EKRKTALHDYL-------KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDDEI-----------FNLCIL 225 (589)
Q Consensus 166 ~~~~~~l~~~L-------~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~~v-----------~~l~~L 225 (589)
+.+...+.... .+++.+||+||++.. ..++.+...+.....++++|+||+...- +++.++
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~ 166 (323)
T 1sxj_B 87 DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKL 166 (323)
T ss_dssp HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCC
Confidence 44444444333 456899999999764 4555565555444557788887765332 899999
Q ss_pred ChHHHHHhhcccc
Q 007787 226 ENEDMINLDSVPA 238 (589)
Q Consensus 226 ~~~~~~~Lf~~~a 238 (589)
+.++..+++...+
T Consensus 167 ~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 167 SDEDVLKRLLQII 179 (323)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988754
No 178
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.58 E-value=0.05 Score=49.65 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=31.7
Q ss_pred cEEEEcCC-CCc-----cCCcccCCCCCCCEEEeecCCcc-----ccchhhcCCCCccEEEecCCccc
Q 007787 323 KLLNLGTI-VLE-----EYPAGINLLLLLKYLKLNIPYLK-----HLPASLCNLLNLYTIDMPSSYVR 379 (589)
Q Consensus 323 r~L~L~~n-~l~-----~~p~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~ 379 (589)
+.|+|++| .+. .+-+.+..-..|+.|+|++|.|. .+...+..-+.|++|+|++|.|+
T Consensus 44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45666664 543 23344455566666666666665 23334444456666666666554
No 179
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.02 E-value=0.43 Score=46.91 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=80.9
Q ss_pred CCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCc---cccccccCH---
Q 007787 92 RDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSA---FREILYKDF--- 165 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~---~~~~~~~~~--- 165 (589)
-.+++|++.. ++.+.+++..+. ...+-++|.=+ .....+.+.+.+.+..... .......+.
T Consensus 24 ~~~~~g~~~~-~~~l~~~l~~~~--~~~~ll~G~~G----------~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 90 (327)
T 1iqp_A 24 LDDIVGQEHI-VKRLKHYVKTGS--MPHLLFAGPPG----------VGKTTAALALARELFGENWRHNFLELNASDERGI 90 (327)
T ss_dssp TTTCCSCHHH-HHHHHHHHHHTC--CCEEEEESCTT----------SSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH
T ss_pred HHHhhCCHHH-HHHHHHHHHcCC--CCeEEEECcCC----------CCHHHHHHHHHHHhcCCcccCceEEeeccccCch
Confidence 4569999999 999999987653 33366777111 2244555555555432110 000111111
Q ss_pred HHHHHHHHHHc-----C-CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccCcE-----------EecCCCC
Q 007787 166 EKRKTALHDYL-----K-NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDDEI-----------FNLCILE 226 (589)
Q Consensus 166 ~~~~~~l~~~L-----~-~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~~v-----------~~l~~L~ 226 (589)
+.+...+.+.. . +++.++|+||++.. ..++.+...+.....++++|+||....- +.+.+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~ 170 (327)
T 1iqp_A 91 NVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 170 (327)
T ss_dssp HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCC
T ss_pred HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCC
Confidence 11122222221 1 56889999999764 5667776666555567888888765432 8999999
Q ss_pred hHHHHHhhcccc
Q 007787 227 NEDMINLDSVPA 238 (589)
Q Consensus 227 ~~~~~~Lf~~~a 238 (589)
.++...++...+
T Consensus 171 ~~~~~~~l~~~~ 182 (327)
T 1iqp_A 171 DEDIAKRLRYIA 182 (327)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 180
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.22 E-value=0.15 Score=46.56 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=57.2
Q ss_pred cCCCCCCCEEEeecC-Ccc-----ccchhhcCCCCccEEEecCCcccc-----ccccccccccCceeeecCcccC-----
Q 007787 339 INLLLLLKYLKLNIP-YLK-----HLPASLCNLLNLYTIDMPSSYVRC-----TPDSIGKMHELRHLNFRTITLP----- 402 (589)
Q Consensus 339 ~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----lp~~~~~L~~L~~L~l~~~~lp----- 402 (589)
+.+-+.|+.|+|+++ .|. .+-..+..-..|+.|+|++|.++. +.+.+..-+.|++|+|+...+-
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445688999999985 776 355566677889999999998853 3444556688999999843332
Q ss_pred ---CcccccCCCCccccccc
Q 007787 403 ---AHPGKFCTSLENLNFIS 419 (589)
Q Consensus 403 ---~~i~~~l~~L~~L~l~~ 419 (589)
+.+. .-+.|++|++.+
T Consensus 117 ala~aL~-~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTL-VTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTT-TTCCCSEEECCC
T ss_pred HHHHHHh-hCCceeEEECCC
Confidence 2344 556799999764
No 181
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.17 E-value=3.1 Score=40.85 Aligned_cols=140 Identities=9% Similarity=0.113 Sum_probs=79.1
Q ss_pred CCccccchhhHHHHHHHHHcC--CCCceEEEEEE---------------ee---------CCceEEEEEE----eCCHHH
Q 007787 93 DNMMSLQDDAMVELLDQLIEG--PLQLSVVAIID---------------SF---------ILIVHAWVSF----DTDPGT 142 (589)
Q Consensus 93 ~~~vGr~~~~~~~i~~~L~~~--~~~~~vi~IvG---------------~F---------~~~~~~wv~v----~~~~~~ 142 (589)
..+.|||++ .++|...|... ......+-|+| .. . ...+|.| -.+...
T Consensus 20 ~~L~~Re~E-~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~--~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVED-FTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELP--IFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSC--CEEEEEEETTCCC--HH
T ss_pred cccCCHHHH-HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCC--ceEEEEEeccccCCHHH
Confidence 348899999 99999887542 33456777888 11 1 2345666 356778
Q ss_pred HHHHHHHHhCCCCccccccccCHHHHHHHHHHH--cCCceEEEEEecCCCh---hhHHHHhhhc-CCCCCCcEEEEeccc
Q 007787 143 MLDNILKYVMPQSAFREILYKDFEKRKTALHDY--LKNKRYLIVLYDVFTN---DVWDYLGEAL-PDHQNGSRVLVILFD 216 (589)
Q Consensus 143 i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDDvw~~---~~w~~l~~~l-~~~~~gs~IivTTR~ 216 (589)
+...|.+++.+... ......+.+...+... -.++.++|+||++..- +.+-.+.... ....+.+-|.|+...
T Consensus 97 ~~~~I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 97 LYEKIWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCc
Confidence 99999999976431 0122233333333332 2457899999998653 2222222111 112222223333222
Q ss_pred C----------------cEEecCCCChHHHHHhhcccc
Q 007787 217 D----------------EIFNLCILENEDMINLDSVPA 238 (589)
Q Consensus 217 ~----------------~v~~l~~L~~~~~~~Lf~~~a 238 (589)
+ .++.+.+.+.++-.+++.+++
T Consensus 174 d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 174 VTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 1 127888999999988877664
No 182
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.90 E-value=4.7 Score=35.33 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=23.1
Q ss_pred CCCccccchhhHHHHHHHHHcCCCCceEEEEEE
Q 007787 92 RDNMMSLQDDAMVELLDQLIEGPLQLSVVAIID 124 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG 124 (589)
-..++|++++ .+++.+++.... ...+-|+|
T Consensus 21 ~~~~~g~~~~-~~~l~~~l~~~~--~~~~ll~G 50 (195)
T 1jbk_A 21 LDPVIGRDEE-IRRTIQVLQRRT--KNNPVLIG 50 (195)
T ss_dssp SCCCCSCHHH-HHHHHHHHTSSS--SCEEEEEC
T ss_pred ccccccchHH-HHHHHHHHhcCC--CCceEEEC
Confidence 4579999999 999999987643 34556778
No 183
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=76.69 E-value=12 Score=37.02 Aligned_cols=135 Identities=11% Similarity=0.079 Sum_probs=78.2
Q ss_pred CCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCc---------------
Q 007787 92 RDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSA--------------- 156 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~--------------- 156 (589)
-.+++|++.. ++.+.+++..+. ....+-|+|.=+ .....+.+.+.+.+.....
T Consensus 15 ~~~~vg~~~~-~~~L~~~l~~~~-~~~~~ll~G~~G----------~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 15 FADVVGQEHV-LTALANGLSLGR-IHHAYLFSGTRG----------VGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp TTTSCSCHHH-HHHHHHHHHHTC-CCSEEEEESCTT----------SSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred hhhccCcHHH-HHHHHHHHHhCC-CCeEEEEECCCC----------CCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 3469999999 999999987653 123555777111 2234455555555543110
Q ss_pred -------ccc------ccccCHHHHHHHHHHH-cCCceEEEEEecCCC--hhhHHHHhhhcCCCCCCcEEEEecccCc-E
Q 007787 157 -------FRE------ILYKDFEKRKTALHDY-LKNKRYLIVLYDVFT--NDVWDYLGEALPDHQNGSRVLVILFDDE-I 219 (589)
Q Consensus 157 -------~~~------~~~~~~~~~~~~l~~~-L~~kr~LlVLDDvw~--~~~w~~l~~~l~~~~~gs~IivTTR~~~-v 219 (589)
... ....+...+...+... ..+++.+||+||+.. ...++.+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 0111222222222111 135678999999964 3566777666655455667777765332 2
Q ss_pred ----------EecCCCChHHHHHhhcccc
Q 007787 220 ----------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 220 ----------~~l~~L~~~~~~~Lf~~~a 238 (589)
+++.+++.++..+++.+.+
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 8999999999988887543
No 184
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=75.18 E-value=4.5 Score=39.15 Aligned_cols=133 Identities=11% Similarity=0.017 Sum_probs=77.9
Q ss_pred CCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCc---cccc------ccc
Q 007787 93 DNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSA---FREI------LYK 163 (589)
Q Consensus 93 ~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~---~~~~------~~~ 163 (589)
.+++|++.. ++.+.+++..+. ...+-++|.=+ .....+.+.+.+.+..... .... ...
T Consensus 17 ~~~~g~~~~-~~~l~~~l~~~~--~~~~ll~G~~G----------~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 2chq_A 17 DEVVGQDEV-IQRLKGYVERKN--IPHLLFSGPPG----------TGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (319)
T ss_dssp GGSCSCHHH-HHHHHTTTTTTC--CCCEEEESSSS----------SSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT
T ss_pred HHHhCCHHH-HHHHHHHHhCCC--CCeEEEECcCC----------cCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH
Confidence 468999999 999888876543 22366777111 2245566666665522110 0000 111
Q ss_pred CHHHHHHHHHHH--c-CCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccCc-E----------EecCCCCh
Q 007787 164 DFEKRKTALHDY--L-KNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDDE-I----------FNLCILEN 227 (589)
Q Consensus 164 ~~~~~~~~l~~~--L-~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~~-v----------~~l~~L~~ 227 (589)
............ + .+++.++|+||+... ...+.+...+.....+.++|+||.... + +.+.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~ 163 (319)
T 2chq_A 84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPK 163 (319)
T ss_dssp TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCH
T ss_pred HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCH
Confidence 111222222211 2 256889999998654 456667666655556778887776543 2 89999999
Q ss_pred HHHHHhhcccc
Q 007787 228 EDMINLDSVPA 238 (589)
Q Consensus 228 ~~~~~Lf~~~a 238 (589)
++...++...+
T Consensus 164 ~~~~~~l~~~~ 174 (319)
T 2chq_A 164 EAMKKRLLEIC 174 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 185
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=65.78 E-value=9 Score=37.19 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=73.7
Q ss_pred CCCccccchhhHHHHHHHHHcC---CCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCcccc-ccccCHHH
Q 007787 92 RDNMMSLQDDAMVELLDQLIEG---PLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSAFRE-ILYKDFEK 167 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~---~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~~~~-~~~~~~~~ 167 (589)
-.+++|++.. ++++.+++... ......+-|+|.=. ..-..+.+.|...+........ .......+
T Consensus 11 ~~~~ig~~~~-~~~l~~~l~~~~~~~~~~~~vll~G~~G----------tGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 79 (324)
T 1hqc_A 11 LDEYIGQERL-KQKLRVYLEAAKARKEPLEHLLLFGPPG----------LGKTTLAHVIAHELGVNLRVTSGPAIEKPGD 79 (324)
T ss_dssp TTTCCSCHHH-HHHHHHHHHHHHHHCSCCCCCEEECCTT----------CCCHHHHHHHHHHHTCCEEEECTTTCCSHHH
T ss_pred HHHhhCHHHH-HHHHHHHHHHHHccCCCCCcEEEECCCC----------CCHHHHHHHHHHHhCCCEEEEeccccCChHH
Confidence 4679999999 99888887531 12234566777111 2234566666666543210000 01112233
Q ss_pred HHHHHHHHcCCceEEEEEecCCCh--hhHHHHhhhcCCCC------------------CCcEEEEecccCc---------
Q 007787 168 RKTALHDYLKNKRYLIVLYDVFTN--DVWDYLGEALPDHQ------------------NGSRVLVILFDDE--------- 218 (589)
Q Consensus 168 ~~~~l~~~L~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~------------------~gs~IivTTR~~~--------- 218 (589)
+...+...+ .+..+|+|||+... ...+.+...+.... .+.++|.||....
T Consensus 80 l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R 158 (324)
T 1hqc_A 80 LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSR 158 (324)
T ss_dssp HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTT
T ss_pred HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhc
Confidence 333332222 35668999999664 34444443332210 2345666665322
Q ss_pred ---EEecCCCChHHHHHhhcccc
Q 007787 219 ---IFNLCILENEDMINLDSVPA 238 (589)
Q Consensus 219 ---v~~l~~L~~~~~~~Lf~~~a 238 (589)
++.+.+++.++...++.+.+
T Consensus 159 ~~~~i~l~~~~~~e~~~~l~~~~ 181 (324)
T 1hqc_A 159 FGIVEHLEYYTPEELAQGVMRDA 181 (324)
T ss_dssp CSCEEECCCCCHHHHHHHHHHHH
T ss_pred ccEEEecCCCCHHHHHHHHHHHH
Confidence 38999999999988887764
No 186
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=65.47 E-value=19 Score=34.93 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=72.4
Q ss_pred CCCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCccccccccCHHHHHH
Q 007787 91 QRDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSAFREILYKDFEKRKT 170 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~ 170 (589)
.-++++|.+.. ++.+.+++..+. ...++-+.|.= ......+.+.+...+....-.-.......+.+..
T Consensus 24 ~~~~ivg~~~~-~~~l~~~l~~~~-~~~~~L~~G~~----------G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~ 91 (324)
T 3u61_B 24 TIDECILPAFD-KETFKSITSKGK-IPHIILHSPSP----------GTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRG 91 (324)
T ss_dssp STTTSCCCHHH-HHHHHHHHHTTC-CCSEEEECSST----------TSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHT
T ss_pred CHHHHhCcHHH-HHHHHHHHHcCC-CCeEEEeeCcC----------CCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHH
Confidence 34679999999 999999998653 22344444400 1234556666666654321000001122344444
Q ss_pred HHHHHcC-----CceEEEEEecCCChh---hHHHHhhhcCCCCCCcEEEEecccCc-E----------EecCCCChHHHH
Q 007787 171 ALHDYLK-----NKRYLIVLYDVFTND---VWDYLGEALPDHQNGSRVLVILFDDE-I----------FNLCILENEDMI 231 (589)
Q Consensus 171 ~l~~~L~-----~kr~LlVLDDvw~~~---~w~~l~~~l~~~~~gs~IivTTR~~~-v----------~~l~~L~~~~~~ 231 (589)
.+.+... +++-+|++||+.... ..+.+...+.....+.++|+||.... + +++.++++++-.
T Consensus 92 ~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 92 PLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKI 171 (324)
T ss_dssp HHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHH
T ss_pred HHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHH
Confidence 4444332 377899999997643 44555544433334567777776543 2 888888877743
No 187
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=58.38 E-value=30 Score=32.64 Aligned_cols=138 Identities=7% Similarity=0.015 Sum_probs=74.2
Q ss_pred CCCCccccchhhHHHHHHHHHcC-----------CCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCcc--
Q 007787 91 QRDNMMSLQDDAMVELLDQLIEG-----------PLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSAF-- 157 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~~-----------~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~~-- 157 (589)
.-++++|.+.. ++++.+.+... -....-+-|+|.=. ..-..+.+.+...+....-.
T Consensus 15 ~~~~i~G~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~G----------tGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 15 RYEDIGGLEKQ-MQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPG----------TGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp CGGGSCSCHHH-HHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSS----------SSHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHhcCHHHH-HHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCC----------CcHHHHHHHHHHHhCCCEEEEe
Confidence 34679999999 99998877431 12234466777111 22344555555555432100
Q ss_pred -ccc----cccCHHHHHHHHHHHcCCceEEEEEecCCCh----------------hhHHHHhhhcC--CCCCCcEEEEec
Q 007787 158 -REI----LYKDFEKRKTALHDYLKNKRYLIVLYDVFTN----------------DVWDYLGEALP--DHQNGSRVLVIL 214 (589)
Q Consensus 158 -~~~----~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~----------------~~w~~l~~~l~--~~~~gs~IivTT 214 (589)
.+. .......+...+......+..+|+|||+... ..+..+...+. ....+..||.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 163 (285)
T 3h4m_A 84 GSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 163 (285)
T ss_dssp GGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred hHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 000 0011122223333333445689999999542 12222322222 123356777787
Q ss_pred ccCcE--------------EecCCCChHHHHHhhccccC
Q 007787 215 FDDEI--------------FNLCILENEDMINLDSVPAT 239 (589)
Q Consensus 215 R~~~v--------------~~l~~L~~~~~~~Lf~~~a~ 239 (589)
..... +.+...+.++..+++...+.
T Consensus 164 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 164 NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp SCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence 64322 88899999999888877653
No 188
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=46.57 E-value=20 Score=32.28 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCceE-EEEEecCCC-----hhhHHHHhhhcCCCCCCcEEEEecccCc
Q 007787 167 KRKTALHDYLKNKRY-LIVLYDVFT-----NDVWDYLGEALPDHQNGSRVLVILFDDE 218 (589)
Q Consensus 167 ~~~~~l~~~L~~kr~-LlVLDDvw~-----~~~w~~l~~~l~~~~~gs~IivTTR~~~ 218 (589)
..-...++.+.+.+| |||||++-. .-..+++...+...-..--||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 344566777777666 999999833 2344556555555556678999999753
No 189
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=45.41 E-value=13 Score=19.87 Aligned_cols=13 Identities=8% Similarity=0.442 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 007787 6 QNLERILKETNYL 18 (589)
Q Consensus 6 ~~v~~Wl~~l~~~ 18 (589)
+.|+.|+.++|-.
T Consensus 8 DSV~rWmeDLr~M 20 (22)
T 3ro3_B 8 DSVQRWMEDLKLM 20 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 5799999998753
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=43.65 E-value=62 Score=30.73 Aligned_cols=59 Identities=7% Similarity=0.194 Sum_probs=41.6
Q ss_pred eEEEEEecCC-----------ChhhHHHHhhhcCCCCCCcEEEEecccC----------c-------EEecCCCChHHHH
Q 007787 180 RYLIVLYDVF-----------TNDVWDYLGEALPDHQNGSRVLVILFDD----------E-------IFNLCILENEDMI 231 (589)
Q Consensus 180 r~LlVLDDvw-----------~~~~w~~l~~~l~~~~~gs~IivTTR~~----------~-------v~~l~~L~~~~~~ 231 (589)
.-+|++||+. .......+...+.....+..||.||... . ++.+.+++.++-.
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 210 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELF 210 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHH
Confidence 3489999997 3455666666665555567888887432 1 1899999999988
Q ss_pred Hhhcccc
Q 007787 232 NLDSVPA 238 (589)
Q Consensus 232 ~Lf~~~a 238 (589)
.++...+
T Consensus 211 ~il~~~l 217 (309)
T 3syl_A 211 EIAGHML 217 (309)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8886654
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.85 E-value=89 Score=30.20 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=72.9
Q ss_pred CCCCccccchhhHHHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCC----Cccccc---ccc
Q 007787 91 QRDNMMSLQDDAMVELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQ----SAFREI---LYK 163 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~----~~~~~~---~~~ 163 (589)
.-.+++|+++. ++.+..++..+. ...+-++|.=+ ..-..+.+.+...+... ...... +..
T Consensus 35 ~~~~i~g~~~~-~~~l~~~l~~~~--~~~~ll~G~~G----------~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 35 NLDEVTAQDHA-VTVLKKTLKSAN--LPHMLFYGPPG----------TGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp STTTCCSCCTT-HHHHHHHTTCTT--CCCEEEECSTT----------SSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred CHHHhhCCHHH-HHHHHHHHhcCC--CCEEEEECCCC----------CCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 34679999999 999999887653 22266777111 11233444444433210 000000 001
Q ss_pred CHHHHHHHHHHH----------------cCCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccCc-E-----
Q 007787 164 DFEKRKTALHDY----------------LKNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDDE-I----- 219 (589)
Q Consensus 164 ~~~~~~~~l~~~----------------L~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~~-v----- 219 (589)
....+...+... -.+++-+|++|++... ...+.+...+.......++|++|.... +
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 102 GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 122222222211 1235568999998543 445556555544444567777664432 2
Q ss_pred -----EecCCCChHHHHHhhcccc
Q 007787 220 -----FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 220 -----~~l~~L~~~~~~~Lf~~~a 238 (589)
+.+.+++.++....+...+
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHH
Confidence 8889999999888877654
No 192
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=37.69 E-value=2e+02 Score=26.12 Aligned_cols=137 Identities=4% Similarity=-0.050 Sum_probs=68.3
Q ss_pred CCCCccccchhhHHHHHHHHH---cCC-------CCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCcc---
Q 007787 91 QRDNMMSLQDDAMVELLDQLI---EGP-------LQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSAF--- 157 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~---~~~-------~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~~--- 157 (589)
.-.+++|.+.. ++++.+++. ... ...+-+-++|.= ...-..+.+.+...+....-.
T Consensus 4 ~~~~i~G~~~~-~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~----------GtGKT~la~~la~~~~~~~~~~~~ 72 (262)
T 2qz4_A 4 SFKDVAGMHEA-KLEVREFVDYLKSPERFLQLGAKVPKGALLLGPP----------GCGKTLLAKAVATEAQVPFLAMAG 72 (262)
T ss_dssp CTTSSCSCHHH-HHHHHHHHHHHHCCC------CCCCCEEEEESCT----------TSSHHHHHHHHHHHHTCCEEEEET
T ss_pred CHHHhCCHHHH-HHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCC----------CCCHHHHHHHHHHHhCCCEEEech
Confidence 34678999988 888776653 211 122334466611 122344555665555432100
Q ss_pred cc----ccccCHHHHHHHHHHHcCCceEEEEEecCCCh-----------------hhHHHHhhhcCC--CCCCcEEEEec
Q 007787 158 RE----ILYKDFEKRKTALHDYLKNKRYLIVLYDVFTN-----------------DVWDYLGEALPD--HQNGSRVLVIL 214 (589)
Q Consensus 158 ~~----~~~~~~~~~~~~l~~~L~~kr~LlVLDDvw~~-----------------~~w~~l~~~l~~--~~~gs~IivTT 214 (589)
.+ ........+...+.........+|++||+... .....+...+.. ...+..||.||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~t 152 (262)
T 2qz4_A 73 AEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAST 152 (262)
T ss_dssp TTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred HHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecC
Confidence 00 00111122333333333445789999999753 122333333322 12355677777
Q ss_pred ccCc--------------EEecCCCChHHHHHhhcccc
Q 007787 215 FDDE--------------IFNLCILENEDMINLDSVPA 238 (589)
Q Consensus 215 R~~~--------------v~~l~~L~~~~~~~Lf~~~a 238 (589)
.... .+.+...+.++-.+++...+
T Consensus 153 n~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~ 190 (262)
T 2qz4_A 153 NRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190 (262)
T ss_dssp SCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHH
T ss_pred CChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 4322 27788888888888877653
No 193
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=37.57 E-value=1.1e+02 Score=31.09 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=68.2
Q ss_pred CCCccccchhhH---HHHHHHHHcCCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCccccccccCHHHH
Q 007787 92 RDNMMSLQDDAM---VELLDQLIEGPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSAFREILYKDFEKR 168 (589)
Q Consensus 92 ~~~~vGr~~~~~---~~i~~~L~~~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~ 168 (589)
-.+++|.+.. + ..+...+..+. +..+-++|.=. ..-..+.+.|...+................+
T Consensus 25 l~~ivGq~~~-~~~~~~L~~~i~~~~--~~~vLL~GppG----------tGKTtlAr~ia~~~~~~f~~l~a~~~~~~~i 91 (447)
T 3pvs_A 25 LAQYIGQQHL-LAAGKPLPRAIEAGH--LHSMILWGPPG----------TGKTTLAEVIARYANADVERISAVTSGVKEI 91 (447)
T ss_dssp TTTCCSCHHH-HSTTSHHHHHHHHTC--CCEEEEECSTT----------SSHHHHHHHHHHHTTCEEEEEETTTCCHHHH
T ss_pred HHHhCCcHHH-HhchHHHHHHHHcCC--CcEEEEECCCC----------CcHHHHHHHHHHHhCCCeEEEEeccCCHHHH
Confidence 4578898877 6 66777776654 45677888111 1233444444444432110000011112222
Q ss_pred HHHH---H-HHcCCceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccCc--E----------EecCCCChHHH
Q 007787 169 KTAL---H-DYLKNKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDDE--I----------FNLCILENEDM 230 (589)
Q Consensus 169 ~~~l---~-~~L~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~~--v----------~~l~~L~~~~~ 230 (589)
...+ . ....+++.+|++|++... ...+.+...+.. +.-.-|..||.+.. + +.+.+++.++.
T Consensus 92 r~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi 170 (447)
T 3pvs_A 92 REAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDI 170 (447)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHH
T ss_pred HHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHH
Confidence 1111 1 112467889999999764 344444444433 21222333554432 2 88999999998
Q ss_pred HHhhcccc
Q 007787 231 INLDSVPA 238 (589)
Q Consensus 231 ~~Lf~~~a 238 (589)
..++.+.+
T Consensus 171 ~~il~~~l 178 (447)
T 3pvs_A 171 EQVLTQAM 178 (447)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 194
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=33.89 E-value=1.5e+02 Score=28.53 Aligned_cols=134 Identities=9% Similarity=0.002 Sum_probs=73.8
Q ss_pred CCCccccchhhHHHHHHHHHcC---CCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCcccc-ccccCHHH
Q 007787 92 RDNMMSLQDDAMVELLDQLIEG---PLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSAFRE-ILYKDFEK 167 (589)
Q Consensus 92 ~~~~vGr~~~~~~~i~~~L~~~---~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~~~~-~~~~~~~~ 167 (589)
-.+++|++.. ++++..++... ......+-|+|.=. ..-..+.+.|...+........ ........
T Consensus 28 ~~~iiG~~~~-~~~l~~~l~~~~~~~~~~~~vll~G~~G----------tGKT~la~~ia~~~~~~~~~~~~~~~~~~~~ 96 (338)
T 3pfi_A 28 FDGYIGQESI-KKNLNVFIAAAKKRNECLDHILFSGPAG----------LGKTTLANIISYEMSANIKTTAAPMIEKSGD 96 (338)
T ss_dssp GGGCCSCHHH-HHHHHHHHHHHHHTTSCCCCEEEECSTT----------SSHHHHHHHHHHHTTCCEEEEEGGGCCSHHH
T ss_pred HHHhCChHHH-HHHHHHHHHHHHhcCCCCCeEEEECcCC----------CCHHHHHHHHHHHhCCCeEEecchhccchhH
Confidence 4579999999 99999888642 23344566777211 2244455666555543211000 01112223
Q ss_pred HHHHHHHHcCCceEEEEEecCCCh--hhHHHHhhhcCCCC------------------CCcEEEEecccCc---------
Q 007787 168 RKTALHDYLKNKRYLIVLYDVFTN--DVWDYLGEALPDHQ------------------NGSRVLVILFDDE--------- 218 (589)
Q Consensus 168 ~~~~l~~~L~~kr~LlVLDDvw~~--~~w~~l~~~l~~~~------------------~gs~IivTTR~~~--------- 218 (589)
....+.. ..+..+|+||++... ...+.+...+.... ++..+|.||....
T Consensus 97 ~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R 174 (338)
T 3pfi_A 97 LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDR 174 (338)
T ss_dssp HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhh
Confidence 3333322 235678899999754 34444544443221 1235555554322
Q ss_pred ---EEecCCCChHHHHHhhcccc
Q 007787 219 ---IFNLCILENEDMINLDSVPA 238 (589)
Q Consensus 219 ---v~~l~~L~~~~~~~Lf~~~a 238 (589)
++.+.+++.++...++.+.+
T Consensus 175 ~~~~i~l~~~~~~e~~~il~~~~ 197 (338)
T 3pfi_A 175 FGMQFRLEFYKDSELALILQKAA 197 (338)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHH
T ss_pred cCEEeeCCCcCHHHHHHHHHHHH
Confidence 28999999999888887654
No 195
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=30.74 E-value=32 Score=19.12 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.1
Q ss_pred hcCCCCCCcEEEEecccCc
Q 007787 200 ALPDHQNGSRVLVILFDDE 218 (589)
Q Consensus 200 ~l~~~~~gs~IivTTR~~~ 218 (589)
++|....|+-|+|||....
T Consensus 3 PlPa~eeGaT~lVtTKT~d 21 (26)
T 2gkw_B 3 PVPATELGSTELVTTKTAG 21 (26)
T ss_pred cccccccCceEEEEeccCC
Confidence 5677788999999997643
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=30.39 E-value=3.7e+02 Score=25.79 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=36.9
Q ss_pred EEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecc-------------cCcE----------EecCCCChHHHHHhhc
Q 007787 181 YLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILF-------------DDEI----------FNLCILENEDMINLDS 235 (589)
Q Consensus 181 ~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR-------------~~~v----------~~l~~L~~~~~~~Lf~ 235 (589)
.+|++|++... +..+.+...+...... .++++|. ...+ +.+.+++.++..+++.
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 269 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILR 269 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHH
Confidence 48999999654 4566666666444333 3444442 1111 8899999999998888
Q ss_pred ccc
Q 007787 236 VPA 238 (589)
Q Consensus 236 ~~a 238 (589)
..+
T Consensus 270 ~~~ 272 (368)
T 3uk6_A 270 IRC 272 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 197
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.47 E-value=60 Score=31.60 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=40.5
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccC-cE----------EecCCCChHHHHHhhcccc
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDD-EI----------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~-~v----------~~l~~L~~~~~~~Lf~~~a 238 (589)
++.-+++||++... ...+.+...+.....+..+|++|... .+ +++.+++.++....+.+.+
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence 35668999999764 34455555444333466777776553 33 8999999999888877654
No 198
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=26.23 E-value=3.9e+02 Score=25.32 Aligned_cols=138 Identities=12% Similarity=0.010 Sum_probs=69.6
Q ss_pred CCCCccccchhhHHHHHHHHHc----------CCCCceEEEEEEeeCCceEEEEEEeCCHHHHHHHHHHHhCCCCcc---
Q 007787 91 QRDNMMSLQDDAMVELLDQLIE----------GPLQLSVVAIIDSFILIVHAWVSFDTDPGTMLDNILKYVMPQSAF--- 157 (589)
Q Consensus 91 ~~~~~vGr~~~~~~~i~~~L~~----------~~~~~~vi~IvG~F~~~~~~wv~v~~~~~~i~~~il~~l~~~~~~--- 157 (589)
.-.+++|.+.. ++++.+.+.. .....+-|-++|.= ...-..+.+.|...+....-.
T Consensus 16 ~~~di~G~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gpp----------GtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 16 KWEDVAGLEGA-KEALKEAVILPVKFPHLFKGNRKPTSGILLYGPP----------GTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CGGGSCSCHHH-HHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSS----------SSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CHHHhcChHHH-HHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCC----------CCcHHHHHHHHHHHHCCCEEEEch
Confidence 34679999999 9999887731 11123445667711 122333444444444321100
Q ss_pred ccc---cccCHHHHHHHH-HHHcCCceEEEEEecCCCh-------------hhHHHHhhhcC---CCCCCcEEEEecccC
Q 007787 158 REI---LYKDFEKRKTAL-HDYLKNKRYLIVLYDVFTN-------------DVWDYLGEALP---DHQNGSRVLVILFDD 217 (589)
Q Consensus 158 ~~~---~~~~~~~~~~~l-~~~L~~kr~LlVLDDvw~~-------------~~w~~l~~~l~---~~~~gs~IivTTR~~ 217 (589)
.+. .....+.....+ ...-..+..+|++|++... .....+...+. ....+..||.||...
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 000 001112222222 2223345689999999632 11333433332 233455666677653
Q ss_pred cE------------EecCCCChHHHHHhhccccC
Q 007787 218 EI------------FNLCILENEDMINLDSVPAT 239 (589)
Q Consensus 218 ~v------------~~l~~L~~~~~~~Lf~~~a~ 239 (589)
.. +.+...+.++-.+++..++.
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc
Confidence 32 66777787777777776543
No 199
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.50 E-value=2.8e+02 Score=28.66 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=36.4
Q ss_pred CceEEEEEecCCCh-----hhHHHHhhhcCCCCCCcEEEEecccCc---E---------EecCCCChHHHHHhhcccc
Q 007787 178 NKRYLIVLYDVFTN-----DVWDYLGEALPDHQNGSRVLVILFDDE---I---------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 178 ~kr~LlVLDDvw~~-----~~w~~l~~~l~~~~~gs~IivTTR~~~---v---------~~l~~L~~~~~~~Lf~~~a 238 (589)
+++.+|++|++... ..+..+...+... +..||++|.... + +.+.+++.++..+.+...+
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHH
Confidence 57889999999543 2344444443322 334555544322 1 8899999999888776644
No 200
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=22.06 E-value=99 Score=29.97 Aligned_cols=61 Identities=8% Similarity=-0.011 Sum_probs=43.7
Q ss_pred CceEEEEEecCCCh--hhHHHHhhhcCCCCCCcEEEEecccC-cE----------EecCCCChHHHHHhhcccc
Q 007787 178 NKRYLIVLYDVFTN--DVWDYLGEALPDHQNGSRVLVILFDD-EI----------FNLCILENEDMINLDSVPA 238 (589)
Q Consensus 178 ~kr~LlVLDDvw~~--~~w~~l~~~l~~~~~gs~IivTTR~~-~v----------~~l~~L~~~~~~~Lf~~~a 238 (589)
+++-++|+|++... +..+.+...+.....+..+|++|... .+ +++.++++++..+.+.+..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence 56778899998654 45666766665544566766666554 33 9999999999988887765
Done!