BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007789
(589 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 139/224 (62%), Gaps = 14/224 (6%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKV 412
A++EA+ IL R ID++ ++ A+ KPY K+T +AK+A WL H
Sbjct: 102 AVKEAVSEILETSRRIDLIEEIRKAE---KPYVIMFVGFNGSGKTTTIAKLANWLKNHGF 158
Query: 413 SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVD 472
SV++AA DTFR+GA+EQL HA+R+ V + + Y DPA VA +AIQ A G DVVL+D
Sbjct: 159 SVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLID 218
Query: 473 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 532
TAGR + N LM + K+ + P+LV+FVG+AL GN V+Q +FN+ +
Sbjct: 219 TAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVK--------- 269
Query: 533 LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 576
IDGI+LTK D D + GAALS+ YV AP++FVG GQ Y DL+
Sbjct: 270 -IDGIILTKLDA-DARGGAALSISYVIDAPILFVGVGQGYDDLR 311
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 138/224 (61%), Gaps = 14/224 (6%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKV 412
A++EA+ IL R ID++ ++ A+ KPY K+T +AK+A WL H
Sbjct: 102 AVKEAVSEILETSRRIDLIEEIRKAE---KPYVIXFVGFNGSGKTTTIAKLANWLKNHGF 158
Query: 413 SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVD 472
SV++AA DTFR+GA+EQL HA+R+ V + + Y DPA VA +AIQ A G DVVL+D
Sbjct: 159 SVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLID 218
Query: 473 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 532
TAGR + N L K+ + P+LV+FVG+AL GN V+Q +FN+ +
Sbjct: 219 TAGRSETNRNLXDEXKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVK--------- 269
Query: 533 LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 576
IDGI+LTK D D + GAALS+ YV AP++FVG GQ Y DL+
Sbjct: 270 -IDGIILTKLDA-DARGGAALSISYVIDAPILFVGVGQGYDDLR 311
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 147/301 (48%), Gaps = 37/301 (12%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA--AMEEALVRI---------- 361
T S ++I+G+ L + +++ L+ ++ L+ +VA + E + R+
Sbjct: 6 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN 65
Query: 362 --LTPRRS-IDILRD--VHAAKEQRK--------PYXXXXXXXXXXXKSTNLAKVAYWLL 408
LTP + + I+R+ V A E+ + P K+T++ K+ +L
Sbjct: 66 KSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR 125
Query: 409 Q-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
+ HK V++ + D +R A++QL T A ++ V F + P + A++EA D
Sbjct: 126 EKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYD 185
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527
V+LVDTAGR+ +E +M + ++ NP LFV +A+ G DA + FN+ L
Sbjct: 186 VLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP---- 241
Query: 528 SPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTL 587
+ G++LTK D D + GAALS+ +++G P+ F+G G+ L+ + I +
Sbjct: 242 ------LTGVVLTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294
Query: 588 L 588
L
Sbjct: 295 L 295
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 147/301 (48%), Gaps = 37/301 (12%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA--AMEEALVRI---------- 361
T S ++I+G+ L + +++ L+ ++ L+ +VA + E + R+
Sbjct: 5 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN 64
Query: 362 --LTP-RRSIDILRD--VHAAKEQRK--------PYXXXXXXXXXXXKSTNLAKVAYWLL 408
LTP + + I+R+ V A E+ + P K+T++ K+ +L
Sbjct: 65 KSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR 124
Query: 409 Q-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
+ HK V++ + D +R A++QL T A ++ V F + P + A++EA D
Sbjct: 125 EKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYD 184
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527
V+LVDTAGR+ +E +M + ++ NP LFV +A+ G DA + FN+ L
Sbjct: 185 VLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP---- 240
Query: 528 SPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTL 587
+ G++LTK D D + GAALS+ +++G P+ F+G G+ L+ + I +
Sbjct: 241 ------LTGVVLTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 293
Query: 588 L 588
L
Sbjct: 294 L 294
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 11/193 (5%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T +AK+A + + V + DT+R GA QLR R + +F EKD +AK
Sbjct: 113 KTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAK 172
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
E + G D+++VDTAGR ++++ L+ + ++ + +P V+ V + +G A
Sbjct: 173 EGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---- 228
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDL 575
+NQ LA ++P I I++TK D K G ALS V +GAP+ F+G G+ D+
Sbjct: 229 --YNQALAFKEATP----IGSIIVTKLDG-SAKGGGALSAVAATGAPIKFIGTGEKIDDI 281
Query: 576 KKLNVKSIVKTLL 588
+ + V LL
Sbjct: 282 EPFDPPRFVSRLL 294
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 11/181 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T AK+A + ++ A DT R A EQLR ++ VP+ E + P + +
Sbjct: 111 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
++A D++LVDTAGR+Q +EPLM L++L + PD VL V +A+ G +A+
Sbjct: 171 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDL 575
F++K+ + G++LTK D D + GAALS +V+G P+ F G + L
Sbjct: 231 RAFDEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSEKPEGL 279
Query: 576 K 576
+
Sbjct: 280 E 280
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 379 EQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 438
E + P+ K+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 95 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 154
Query: 439 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 492
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 155 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 214
Query: 493 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 552
+ P V+ +A G +AV Q F++ + + GI LTK D K G
Sbjct: 215 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGT-AKGGVI 263
Query: 553 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
S+ G P+ ++G G+ DL+ ++ L
Sbjct: 264 FSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 299
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF-EKGYEKDPAIVA 454
K+T AK+A ++ + + + A DT+R A EQL+ A ++ VPI+ ++ K P +
Sbjct: 112 KTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIV 171
Query: 455 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514
KE +++ + +DV+++DTAGR ++ + L+ + ++ + NPD ++ V + +G A Q
Sbjct: 172 KEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQ 229
Query: 515 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 574
F + + ++ S I++TK D K G ALS V + AP+ F+G G+ D
Sbjct: 230 AKAFKEAVGEIGS---------IIVTKLDG-SAKGGGALSAVAETKAPIKFIGIGEGIDD 279
Query: 575 LKKLNVKSIVKTLL 588
L+ + K + LL
Sbjct: 280 LEPFDPKKFISRLL 293
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF-EKGYEKDPAIVA 454
K+T AK+A ++ + + + A DT+R A EQL+ A ++ VPI+ ++ K P +
Sbjct: 112 KTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIV 171
Query: 455 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514
KE +++ + +DV+++DTAGR ++ + L+ + ++ + NPD ++ V + +G A Q
Sbjct: 172 KEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQ 229
Query: 515 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 574
F + + ++ S I++TK D K G ALS V + AP+ F+G G+ D
Sbjct: 230 AKAFKEAVGEIGS---------IIVTKLDG-SAKGGGALSAVAETKAPIKFIGIGEGIDD 279
Query: 575 LKKLNVKSIVKTLL 588
L+ + K + LL
Sbjct: 280 LEPFDPKKFISRLL 293
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 379 EQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 438
E + P+ K+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 94 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 153
Query: 439 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 492
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 154 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 213
Query: 493 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 552
+ P V+ +A G +AV Q F++ + + GI LTK D K G
Sbjct: 214 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGT-AKGGVI 262
Query: 553 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
S+ G P+ ++G G+ DL+ ++ L
Sbjct: 263 FSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 298
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 379 EQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 438
E + P+ K+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 89 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 148
Query: 439 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 492
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 149 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 208
Query: 493 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 552
+ P V+ +A G +AV Q F++ + + GI LTK D K G
Sbjct: 209 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGT-AKGGVI 257
Query: 553 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
S+ G P+ ++G G+ DL+ ++ L
Sbjct: 258 FSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 293
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T AK+A + ++ A DT R A EQLR ++ VP+ E + P + +
Sbjct: 111 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
++A D++LVDTAGR+Q +EPLM L++L + PD VL V +A+ G +A+
Sbjct: 171 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570
F++K+ + G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 231 RAFDEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T AK+A + ++ A DT R A EQLR ++ VP+ E + P + +
Sbjct: 111 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
++A D++LVDTAGR+Q +EPLM L++L + PD VL V +A+ G +A+
Sbjct: 171 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570
F++K+ + G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 231 RAFDEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T AK+A + ++ A DT R A EQLR ++ VP+ E + P + +
Sbjct: 110 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 169
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
++A D++LVDTAGR+Q +EPLM L++L + PD VL V +A+ G +A+
Sbjct: 170 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 229
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570
F++K+ + G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 230 RAFDEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 273
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T AK+A + ++ A DT R A EQLR ++ VP+ E + P + +
Sbjct: 110 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 169
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
++A D++LVDTAGR+Q +EPLM L++L + PD VL V +A+ G +A+
Sbjct: 170 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 229
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570
F++K+ + G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 230 RAFDEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 273
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T AK+A + ++ A DT R A EQLR ++ VP+ E + P + +
Sbjct: 111 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
++A D++LVDTAGR+Q +EPLM L++L + PD VL V +A+ G +A+
Sbjct: 171 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570
F++K+ + G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 231 RAFDEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T AK+A + ++ A DT R A EQLR ++ VP+ E + P + +
Sbjct: 111 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
++A D++LVDTAGR+Q +EPLM L++L + PD VL V +A+ G +A+
Sbjct: 171 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570
F++K+ + G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 231 RAFDEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T AK+A + ++ A DT R A EQLR ++ VP+ E + P + +
Sbjct: 111 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
++A D++LVDTAGR+Q +EPLM L++L + PD VL V +A+ G +A+
Sbjct: 171 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570
F++K+ + G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 231 RAFDEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T AK+A + ++ A DT R A EQLR ++ VP+ E + P + +
Sbjct: 111 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
++A D++LVDTAGR+Q +EPLM L++L + PD VL V +A+ G +A+
Sbjct: 171 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570
F++K+ + G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 231 RAFDEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T AK+A + ++ A DT R A EQLR ++ VP+ E + P + +
Sbjct: 111 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
++A D++LVDTAGR+Q +EPLM L++L + PD VL V +A+ G +A+
Sbjct: 171 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570
F++K+ + G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 231 RAFDEKVG----------VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 379 EQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 438
E + P+ K+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 348
Query: 439 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 492
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 349 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 408
Query: 493 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 552
+ P V+ +A G +AV Q F++ + + GI LTK D K G
Sbjct: 409 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGT-AKGGVI 457
Query: 553 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
S+ G P+ ++G G+ DL+ ++ L
Sbjct: 458 FSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 493
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 101/193 (52%), Gaps = 11/193 (5%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T +K+AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A
Sbjct: 114 KTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIAS 173
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
E +++ ++++VDT+GR + + L + ++ PD +++V +A +G Q
Sbjct: 174 EGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA 233
Query: 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDL 575
F K+ D++S +++TK D K G ALS V + +P++F+G G+ D
Sbjct: 234 KAFKDKV-DVAS---------VIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDF 282
Query: 576 KKLNVKSIVKTLL 588
+ + + LL
Sbjct: 283 EPFKTQPFISKLL 295
>pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 303
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 22/248 (8%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYX-----XXXXXXXXXXKSTNLAKVAYWL 407
A++E LV +L P LR + ++ KP K+T +AK+ +
Sbjct: 66 AVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYY 125
Query: 408 LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
VM A DTFR+ QL +RL +P+ + DPA +A +A+Q G D
Sbjct: 126 QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYD 185
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQK 521
++ VDTAGR+ LM L K+ P V V +A+ G + ++Q KF++
Sbjct: 186 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA 245
Query: 522 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVK 581
+ + G+++TK D K G + +V P+ FVG G+ DL+ + +
Sbjct: 246 VG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPE 294
Query: 582 SIVKTLLK 589
+ V+ LL+
Sbjct: 295 AFVEALLE 302
>pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
Length = 283
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 22/248 (8%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXX-----KSTNLAKVAYWL 407
A++E LV +L P LR + ++ KP K+T +AK+ +
Sbjct: 46 AVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYY 105
Query: 408 LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
VM A DTFR+ QL +RL +P+ + DPA +A +A+Q G D
Sbjct: 106 QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYD 165
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQK 521
++ VDTAGR+ LM L K+ P V V +A+ G + ++Q KF++
Sbjct: 166 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA 225
Query: 522 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVK 581
+ + G+++TK D K G + +V P+ FVG G+ DL+ + +
Sbjct: 226 VG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPE 274
Query: 582 SIVKTLLK 589
+ V+ LL+
Sbjct: 275 AFVEALLE 282
>pdb|2Q9A|A Chain A, Structure Of Apo Ftsy
pdb|2Q9A|B Chain B, Structure Of Apo Ftsy
pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex
pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex
pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex
pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex
Length = 304
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 22/248 (8%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYX-----XXXXXXXXXXKSTNLAKVAYWL 407
A++E LV +L P LR + ++ KP K+T +AK+ +
Sbjct: 67 AVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYY 126
Query: 408 LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
VM A DTFR+ QL +RL +P+ + DPA +A +A+Q G D
Sbjct: 127 QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYD 186
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQK 521
++ VDTAGR+ LM L K+ P V V +A+ G + ++Q KF++
Sbjct: 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA 246
Query: 522 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVK 581
+ + G+++TK D K G + +V P+ FVG G+ DL+ + +
Sbjct: 247 VG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPE 295
Query: 582 SIVKTLLK 589
+ V+ LL+
Sbjct: 296 AFVEALLE 303
>pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex
Length = 284
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 22/248 (8%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXX-----KSTNLAKVAYWL 407
A++E LV +L P LR + ++ KP K+T +AK+ +
Sbjct: 47 AVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYY 106
Query: 408 LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
VM A DTFR+ QL +RL +P+ + DPA +A +A+Q G D
Sbjct: 107 QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYD 166
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQK 521
++ VDTAGR+ LM L K+ P V V +A+ G + ++Q KF++
Sbjct: 167 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA 226
Query: 522 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVK 581
+ + G+++TK D K G + +V P+ FVG G+ DL+ + +
Sbjct: 227 VG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPE 275
Query: 582 SIVKTLLK 589
+ V+ LL+
Sbjct: 276 AFVEALLE 283
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 101/201 (50%), Gaps = 20/201 (9%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI-FEKGYEKDPAIVA 454
K+T L K+A + V V+MAA DTFR+ A EQL A+R I +G + PA V
Sbjct: 129 KTTTLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEVWAQRTGSEIVMAEGPKPRPAAVL 188
Query: 455 KEAIQEATRNGSDVVLVDTAGRMQDNEPLM-------RALSKLIYLNNPDLVLFVGEALV 507
+A++ A DVVL DT+GR+ N LM RA+SK + + P+ VL V +
Sbjct: 189 SQAVRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCKRAVSKALS-SAPNEVLLVLDGTT 247
Query: 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVG 567
G + + Q +FNQ + + G +LTK D + G +S+V PV FVG
Sbjct: 248 GLNMLAQAREFNQVIG----------VTGFILTKLDGT-ARGGCVVSVVDELSIPVKFVG 296
Query: 568 CGQSYTDLKKLNVKSIVKTLL 588
G+ DL+ + +S V L
Sbjct: 297 VGEGIDDLQPFDAQSFVDALF 317
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 20/216 (9%)
Query: 381 RKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 440
RKP K+T+L K+A+ L V+MAA DTFR+ A +QL A R
Sbjct: 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE 214
Query: 441 I-FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM-------RALSKLIY 492
I +G + A V +A++ G DVVL DT+GR+ N LM +A+ K++
Sbjct: 215 IVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVS 274
Query: 493 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 552
P+ +L V + G + + Q +FN+ + I G++LTK D + G
Sbjct: 275 -GAPNEILLVLDGNTGLNMLPQAREFNEVVG----------ITGLILTKLDG-SARGGCV 322
Query: 553 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+S+V G PV F+G G++ DL+ + ++ V +
Sbjct: 323 VSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 358
>pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 304
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 22/248 (8%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYX-----XXXXXXXXXXKSTNLAKVAYWL 407
A++E LV +L P LR + ++ KP K+T +AK+ +
Sbjct: 67 AVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYY 126
Query: 408 LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
VM A DTFR+ QL +RL +P+ + D A +A +A+Q G D
Sbjct: 127 QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYD 186
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQK 521
++ VDTAGR+ LM L K+ P V V +A+ G + ++Q KF++
Sbjct: 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA 246
Query: 522 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVK 581
+ + G+++TK D K G + +V P+ FVG G+ DL+ + +
Sbjct: 247 VG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPE 295
Query: 582 SIVKTLLK 589
+ V+ LL+
Sbjct: 296 AFVEALLE 303
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 13/195 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T K+AY+ + V + A D +R A +QL ++ V ++ + ++P +AK
Sbjct: 110 KTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAK 169
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEP--LMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513
+ + +N D+++VDTAGR E L+ + ++ + PD V+ V +A +G A D
Sbjct: 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229
Query: 514 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573
S+F+Q +SP I +++TK D K G ALS V +GA + F+G G+
Sbjct: 230 LASRFHQ------ASP----IGSVIITKMDG-TAKGGGALSAVVATGATIKFIGTGEKID 278
Query: 574 DLKKLNVKSIVKTLL 588
+L+ N K V +L
Sbjct: 279 ELETFNAKRFVSRIL 293
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 20/216 (9%)
Query: 381 RKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 440
RKP K+T+L K+A+ L V+MAA DTFR+ A +QL A R
Sbjct: 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE 157
Query: 441 I-FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM-------RALSKLIY 492
I +G + A V +A++ G DVVL DT+GR+ N LM +A+ K++
Sbjct: 158 IVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVS 217
Query: 493 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 552
P+ +L V + G + + Q +FN+ + I G++LTK D + G
Sbjct: 218 -GAPNEILLVLDGNTGLNMLPQAREFNEVVG----------ITGLILTKLDG-SARGGCV 265
Query: 553 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+S+V G PV F+G G++ DL+ + ++ V +
Sbjct: 266 VSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 301
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 13/195 (6%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455
K+T K+AY+ + V + A D +R A +QL ++ V ++ + ++P +AK
Sbjct: 117 KTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAK 176
Query: 456 EAIQEATRNGSDVVLVDTAGRMQDNEP--LMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513
+ + +N D+++VDTAGR E L+ + ++ + PD V+ V +A +G A D
Sbjct: 177 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 236
Query: 514 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573
S+F+Q +SP I +++TK D K G ALS V +GA + F+G G+
Sbjct: 237 LASRFHQ------ASP----IGSVIITKMDG-TAKGGGALSAVVATGATIKFIGTGEKID 285
Query: 574 DLKKLNVKSIVKTLL 588
+L+ N K V +L
Sbjct: 286 ELETFNAKRFVSRIL 300
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR-RL--QVPIFEKG-YEKDPA 451
K+T+LAK+A + + V++AA DTFR+GA +QL + RL +V + + DPA
Sbjct: 118 KTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPA 177
Query: 452 IVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKL------IYLNNPDLVLFVGEA 505
V +AI++A D++L+DTAGR+Q+ LM L K+ + + P VL V +A
Sbjct: 178 SVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDA 237
Query: 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMF 565
G + V Q +F+ K+AD+S GI+LTK D+ K G L++ + P+
Sbjct: 238 TTGQNGVIQAEEFS-KVADVS---------GIILTKMDST-SKGGIGLAIKELLNIPIKM 286
Query: 566 VGCGQSYTDLKKLNVKSIV 584
+G G+ DL ++ +
Sbjct: 287 IGVGEKVDDLLAFDIDQYI 305
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 13/207 (6%)
Query: 383 PYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 442
PY K+T K+AY+ + V + D +R A+EQL+ +++ VP++
Sbjct: 98 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY 157
Query: 443 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNE--PLMRALSKLIYLNNPDLVL 500
+ EKD +AK +++ ++++VDTAGR E L+ + + PD V
Sbjct: 158 GEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVT 217
Query: 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSG 560
V +A +G A D SKFNQ I I++TK D K G ALS V +G
Sbjct: 218 LVIDASIGQKAYDLASKFNQ----------ASKIGTIIITKMDG-TAKGGGALSAVAATG 266
Query: 561 APVMFVGCGQSYTDLKKLNVKSIVKTL 587
A + F+G G+ +L+ N + V L
Sbjct: 267 ATIKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 13/207 (6%)
Query: 383 PYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 442
PY K+T K+AY+ + V + D +R A+EQL+ +++ VP++
Sbjct: 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY 157
Query: 443 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNE--PLMRALSKLIYLNNPDLVL 500
+ EKD +AK +++ ++++VDTAGR E L+ + + PD V
Sbjct: 158 GEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVT 217
Query: 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSG 560
V +A +G A D SKFNQ I I++TK D K G ALS V +G
Sbjct: 218 LVIDASIGQKAYDLASKFNQ----------ASKIGTIIITKMDG-TAKGGGALSAVAATG 266
Query: 561 APVMFVGCGQSYTDLKKLNVKSIVKTL 587
A + F+G G+ +L+ N + V L
Sbjct: 267 ATIKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 17/212 (8%)
Query: 383 PYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 442
P+ K+T+ K+A + SV++AA DTFR+ A+EQL+ R+ +
Sbjct: 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI 163
Query: 443 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNP 496
DPA VA +A+ A DVV++DTAGR+ + LM L K+ + + P
Sbjct: 164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAP 223
Query: 497 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMV 556
L V +A G + + Q F + + + GI+LTK D K G L++
Sbjct: 224 HETLLVIDATTGQNGLVQAKIFKEAVN----------VTGIILTKLDG-TAKGGITLAIA 272
Query: 557 YVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
G P+ F+G G+ DL+ + ++ V+ LL
Sbjct: 273 RELGIPIKFIGVGEKAEDLRPFDPEAFVEVLL 304
>pdb|2FH5|A Chain A, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|1 Chain 1, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 185
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
M++ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 10 MVDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 64
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
+ N+ LVFV +Q+IL L YVD L+ + + F + Y
Sbjct: 65 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 103
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 396 KSTNLAKVA-YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 454
K+T LAK+A +L+ + DT+R AVEQL+T+A LQ P+ E Y K+ A
Sbjct: 118 KTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL-EVCYTKEEFQQA 176
Query: 455 KEAIQEATRNGSDVVLVDTAGR 476
KE E D V VDTAGR
Sbjct: 177 KELFSEY-----DHVFVDTAGR 193
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 410 HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVV 469
H S++ D+ +G Q R L VP+F K + AI++A NG++++
Sbjct: 67 HVASIIFGQHDSPVTGIAPQ----CRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANII 122
Query: 470 LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515
V +AG++ D L K I L + VL + A GND + L
Sbjct: 123 NV-SAGQLTDAGEADTWLEKAIQLCQENNVLLI--AATGNDGCECL 165
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 410 HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 442
H V V+ AA RSGAV +R A RL +P+
Sbjct: 218 HPVLVVGAAA--IRSGAVPAIRALAERLNIPVI 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,686,799
Number of Sequences: 62578
Number of extensions: 541237
Number of successful extensions: 1664
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1576
Number of HSP's gapped (non-prelim): 42
length of query: 589
length of database: 14,973,337
effective HSP length: 104
effective length of query: 485
effective length of database: 8,465,225
effective search space: 4105634125
effective search space used: 4105634125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)