BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007789
(589 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBG7|SRPR_MOUSE Signal recognition particle receptor subunit alpha OS=Mus musculus
GN=Srpr PE=1 SV=1
Length = 636
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 369/664 (55%), Gaps = 104/664 (15%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAE--------ELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE ++ + + S++ KP+ ++ + G+ K E+ N
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKTK---EKAKN------ 166
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
+ RG K E + + + +G++ G EN + K ++ K
Sbjct: 167 -------NKKRGAKKEGSDGTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQK 219
Query: 224 GGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------N 272
GK D + PK+K K RVW+ +K LD++ P NG+ N
Sbjct: 220 HGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDIN 278
Query: 273 IEVEAADHGESMMDKEEVFSSDSESEEDEEVGKHNKPDAKK--TGWFSSMFQSIAGKANL 330
+ + G + D D S +DE ++ KP A K G M + + G +L
Sbjct: 279 L-IRGTGPGGQLQD------LDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSL 331
Query: 331 DKADLEPALKALKDRLMTKNVAA--------------------------------MEEAL 358
+ D+E L ++D L+ KNVAA ++E+L
Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391
Query: 359 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 418
V+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AA
Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 451
Query: 419 CDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNG 465
CDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A G
Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 511
Query: 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 525
DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+ LAD
Sbjct: 512 FDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADH 571
Query: 526 SSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVK 585
S + P+LIDGI+LTKFDTIDDKVGAA+SM Y++ P++FVG GQ+Y DL+ LN K++V
Sbjct: 572 SMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVA 631
Query: 586 TLLK 589
L+K
Sbjct: 632 ALMK 635
>sp|Q9U5L1|SRPR_DROME Signal recognition particle receptor subunit alpha homolog
OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2
Length = 614
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 362/645 (56%), Gaps = 87/645 (13%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ ++IFT+GG++LW GN+ S I++LIR +LEER+ A + Y+ A ++
Sbjct: 1 MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLA--VQ 56
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY-DPKRTDYSDFDEMFRQLRKE 119
+ NEL LV+ A++Q+++ L Y+D LA M+ +F E Y D + D DFD +R++
Sbjct: 57 FKLDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 116
Query: 120 AEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLE 179
AE + + K+ + + N +K S ++ DD R
Sbjct: 117 AEEASAKQVKAPKTMRSYNESQK-------------SKKTVASMIQDDKKPVEKR----- 158
Query: 180 NGHSNVGNVEIEESRVTGVANGKEN-TSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNP 238
V I+E+ + T S + + K +KLR K T S
Sbjct: 159 --------VNIQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREKL-TPTKKTSPSDSKS 209
Query: 239 DPKKKITKKNRVWD---DSPPESKLDFT--DPAGGNGSNIEVEAADHGESMMDKEEVFSS 293
+K KK RVWD +S + LD + P NI E + ++ +V S
Sbjct: 210 SKPEKAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESE 269
Query: 294 DSESEEDE----EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTK 349
D ED E + + K G S F+ I G + ADL+PAL+ ++D L++K
Sbjct: 270 DEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISK 329
Query: 350 NVA--------------------------------AMEEALVRILTPRRSIDILRDVHAA 377
NVA A+ E+LVRIL+P+R IDI+RD +
Sbjct: 330 NVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALES 389
Query: 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL 437
K +PY ++F GVNGVGKSTNLAK+ +WL+++ +V++AACDTFR+GAVEQLRTH R L
Sbjct: 390 KRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHL 449
Query: 438 Q-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM 484
V ++EKGY KD A +A EAI+ A DVVLVDTAGRMQDNEPLM
Sbjct: 450 NALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLM 509
Query: 485 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544
R+LSKLI +NNPDLVLFVGEALVGN+AVDQL KFNQ LAD SS+ NP +IDGI+LTKFDT
Sbjct: 510 RSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDT 569
Query: 545 IDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589
IDDKVGAA+SM Y++G P++FVG GQ+Y DLK +NV ++V +L+K
Sbjct: 570 IDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLMK 614
>sp|Q3MHE8|SRPR_BOVIN Signal recognition particle receptor subunit alpha OS=Bos taurus
GN=SRPR PE=2 SV=1
Length = 639
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 260/668 (38%), Positives = 367/668 (54%), Gaps = 109/668 (16%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAE--------ELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE ++ + + S++ KP+ ++ + G+ K + G
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAKK 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-- 221
DG + E +G+ G EN ++SK +++R
Sbjct: 176 EGSDGPLATSKAAPAEK---------------SGLPVGPENGE------ELSKEEQIRRK 214
Query: 222 -----NKGGKKTDTVVSKGSNPDPKKKITKKNRVW--DDSPPESKLDFTDPAGGNGSNIE 274
K G+ + + PK+K K RVW S + LD++ P +N
Sbjct: 215 REEFIQKHGRGMEKSSKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPT----TNGA 270
Query: 275 VEAADHGESMMDK-----EEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAG 326
EAA + + + ++ D S +DE +++ KP A K G M + + G
Sbjct: 271 PEAAPPEDINLIRGTGPGRQLQDLDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVG 330
Query: 327 KANLDKADLEPALKALKDRLMTKNVAA--------------------------------M 354
+L + D+E L ++D L+ KNVAA +
Sbjct: 331 SKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQAL 390
Query: 355 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 414
+E+LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+++WLL++ SV
Sbjct: 391 QESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSV 450
Query: 415 MMAACDTFRSGAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEA 461
++AACDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A
Sbjct: 451 LIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFA 510
Query: 462 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 521
G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+
Sbjct: 511 RNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRA 570
Query: 522 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVK 581
LAD S + P+LIDGI+LTKFDTIDDKVGAA+SM Y++ P++FVG GQ+Y DL+ LN K
Sbjct: 571 LADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAK 630
Query: 582 SIVKTLLK 589
++V L+K
Sbjct: 631 AVVAALMK 638
>sp|P08240|SRPR_HUMAN Signal recognition particle receptor subunit alpha OS=Homo sapiens
GN=SRPR PE=1 SV=2
Length = 638
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 261/664 (39%), Positives = 366/664 (55%), Gaps = 102/664 (15%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSD 171
F +L +EAE +S ++ P K + + K R + G + +
Sbjct: 116 DFLRLLREAE-------ESSKIRAPTTMKKFEDSEKAKKPV-RSMIETRGEKPKEKAKNS 167
Query: 172 NMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-------NKG 224
+G K E + + + +G+ G EN ++SK + +R K
Sbjct: 168 KKKGAKKEGSDGPLATSKPVPAEKSGLPVGPEN------GVELSKEELIRRKREEFIQKH 221
Query: 225 GKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------NI 273
G+ + + PK+K K RVW+ +K LD++ P NG+ N+
Sbjct: 222 GRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDINL 280
Query: 274 EVEAADHGESMMDKEEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAGKANL 330
+ G + D D S +DE +++ KP A K G M + + G +L
Sbjct: 281 -IRGTGSGGQLQD------LDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSL 333
Query: 331 DKADLEPALKALKDRLMTKNVAA--------------------------------MEEAL 358
+ D+E L ++D L+ KNVAA ++E+L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393
Query: 359 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 418
V+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453
Query: 419 CDTFRSGAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNG 465
CDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A G
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513
Query: 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 525
DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+ LAD
Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADH 573
Query: 526 SSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVK 585
S + P+LIDGI+LTKFDTIDDKVGAA+SM Y++ P++FVG GQ+Y DL+ LN K++V
Sbjct: 574 SMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVA 633
Query: 586 TLLK 589
L+K
Sbjct: 634 ALMK 637
>sp|P06625|SRPR_CANFA Signal recognition particle receptor subunit alpha OS=Canis
familiaris GN=SRPR PE=2 SV=2
Length = 638
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 257/670 (38%), Positives = 366/670 (54%), Gaps = 114/670 (17%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS------------- 107
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEMFRQLRKEAEARA----EELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
DF + R+ + ++ RA ++ + S++ KP+ ++ + G+ K + +
Sbjct: 116 DFLRLLREREESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-- 221
++D L G + V E+S G+ G EN ++SK + +R
Sbjct: 176 SSDG---------PLATGKA----VPAEKS---GLPAGPEN------GVELSKEELIRRK 213
Query: 222 -----NKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGSNIE 274
K G+ + + PK+K K RVW +K LD++ P +
Sbjct: 214 REEFIQKHGRGLEKSSKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPTTNGAPDAA 273
Query: 275 -------VEAADHGESMMDKEEVFSSDSESEEDEEVGKH-NKPDAKK--TGWFSSMFQSI 324
+ G + D D S +DEE ++ +KP A K G M + +
Sbjct: 274 PPEDINLIRGTGPGGQLQD------LDCSSSDDEETAQNASKPSATKGTLGGMFGMLKGL 327
Query: 325 AGKANLDKADLEPALKALKDRLMTKNVAA------------------------------- 353
G +L + D+E L ++D L+ KNVAA
Sbjct: 328 VGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQ 387
Query: 354 -MEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 412
++E+LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+++WLL++
Sbjct: 388 ALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGF 447
Query: 413 SVMMAACDTFRSGAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQ 459
SV++AACDTFR+GAVE +RTH RRL V +FEKGY KD A +A EAI
Sbjct: 448 SVLIAACDTFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEKGYGKDAAGIAMEAIA 507
Query: 460 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 519
A G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN
Sbjct: 508 FARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFN 567
Query: 520 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLN 579
+ LAD S + P+LIDGI+LTKFDTIDDKVGAA+SM Y++ P++FVG GQ+Y DL+ LN
Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627
Query: 580 VKSIVKTLLK 589
K++V L+K
Sbjct: 628 AKAVVAALMK 637
>sp|Q54ZR7|SRPR_DICDI Signal recognition particle receptor subunit alpha OS=Dictyostelium
discoideum GN=srpr PE=3 SV=1
Length = 615
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/312 (55%), Positives = 214/312 (68%), Gaps = 35/312 (11%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA------------------ 352
AK F F + G +DK DLEP L K L KNVA
Sbjct: 304 AKPVSGFMKYFNVLTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGK 363
Query: 353 --------------AMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 398
ME+ + RILTP+R+IDILR+V A K +R PY +VF GVNGVGKST
Sbjct: 364 KLATFQGVTSVVKQQMEDTITRILTPKRNIDILREVQAVKGKR-PYSIVFSGVNGVGKST 422
Query: 399 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 458
NLAKV YWL + M+AACDTFRSGA+EQL+THA RL V +FE+GY KD A VA++AI
Sbjct: 423 NLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHLFERGYSKDAASVAQDAI 482
Query: 459 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 518
A G DVVL+DT GRMQ+NEPLM+ALSKL+ NN DLVLFVGEALVGND VDQL+KF
Sbjct: 483 AFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLVNQNNVDLVLFVGEALVGNDGVDQLTKF 542
Query: 519 NQKLADLSSSPNPQL--IDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 576
++ L+ L+++ + IDGI+LTKFDTIDDKVGAA+SMVY +G P++F+G GQ+YTDLK
Sbjct: 543 DKSLSLLANTTQTHIRTIDGIILTKFDTIDDKVGAAISMVYSTGHPILFLGTGQNYTDLK 602
Query: 577 KLNVKSIVKTLL 588
++N+KS+VK+LL
Sbjct: 603 RMNIKSVVKSLL 614
>sp|P32916|SRPR_YEAST Signal recognition particle receptor subunit alpha homolog
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRP101 PE=1 SV=2
Length = 621
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 226/445 (50%), Gaps = 87/445 (19%)
Query: 218 QKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPE--SKLDFTDPAGGNGSNIEV 275
+KLR+ GKK T N +K + + D+ E +KLDF+ N S + +
Sbjct: 189 KKLRDTKGKKQST-----GNVGSGRKWGRDGGMLDEMNHEDAAKLDFSSSNSHNSSQVAL 243
Query: 276 EAADHGESMMDKEEVFS------SDSESEEDEEVGKHNKPDAKKTGWFSSMF----QSIA 325
++ + +S D+ E D S +E+ N +AK +G+ S+ F + +
Sbjct: 244 DSTINKDSFGDRTEGGDFLIKEIDDLLSSHKDEITSGN--EAKNSGYVSTAFGFLQKHVL 301
Query: 326 GKANLDKADLEPALKALKDRLMTKNVA--------------------------------A 353
G ++++DL+ L+ L +L+TKNVA +
Sbjct: 302 GNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARES 361
Query: 354 MEEALVRILTPRRSIDILRDVHAAKEQRK------PYVVVFVGVNGVGKSTNLAKVAYWL 407
+ +AL +ILTP S+D+LR++ + + ++ PYV VGVNGVGKSTNL+K+A+WL
Sbjct: 362 LTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAFWL 421
Query: 408 LQHKVSVMMAACDTFRSGAVEQLRTHARRL----------------------QVPIFEKG 445
LQ+ V++ ACDTFRSGAVEQLR H L V +FE G
Sbjct: 422 LQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVELFEAG 481
Query: 446 YEKDPAI--VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503
Y + +AK+AI+ + D+VL+DTAGR ++ LM L PD ++ VG
Sbjct: 482 YGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVG 541
Query: 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPV 563
EALVG D+V Q FN + +D +++K DT+ + +G ++MVY +G P+
Sbjct: 542 EALVGTDSVQQAKNFNDAFG------KGRNLDFFIISKCDTVGEMLGTMVNMVYATGIPI 595
Query: 564 MFVGCGQSYTDLKKLNVKSIVKTLL 588
+FVG GQ+YTDL+ L+VK V TL+
Sbjct: 596 LFVGVGQTYTDLRTLSVKWAVNTLM 620
>sp|O43032|SRPR_SCHPO Signal recognition particle receptor subunit alpha homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp101 PE=3 SV=1
Length = 547
Score = 212 bits (539), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 118/305 (38%), Positives = 169/305 (55%), Gaps = 47/305 (15%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVA------------------------------- 352
I GK L + DL P LK +++ L KNVA
Sbjct: 251 IGGKY-LKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVN 309
Query: 353 -AMEEALVRILTPRRSIDILRDVHAA-KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH 410
A + L +ILTP S+D+L + + K + +PY + +GVNGVGKST LAK+AYWLL +
Sbjct: 310 KAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSN 369
Query: 411 KVSVMMAACDTFRSGAVEQLRTHARRLQ------VPIFEKGYEKDPAIVAKEAIQEATRN 464
+++AACDTFRSGA+EQL H + LQ + +F +GY KD + V K A++ A +N
Sbjct: 370 NFRILVAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQN 429
Query: 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 524
DV+L+DTAGR +++ LM +L K D + V EALVG D++ Q F A
Sbjct: 430 SFDVILIDTAGRRHNDQRLMGSLEKFTKATKLDKIFQVAEALVGTDSLAQAKHFQ---AS 486
Query: 525 LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIV 584
L P +DG +++K DT+ VG + MVY P++FVG GQ+Y+DL+ L+V +V
Sbjct: 487 LYHRP----LDGFIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQTYSDLRTLSVDWVV 542
Query: 585 KTLLK 589
L+K
Sbjct: 543 DQLMK 547
Score = 39.7 bits (91), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLL-EERSGLASFNYDSAGAAYTL 59
M++ I +GG++LW K+ + + + L L E+R+ + +D YT+
Sbjct: 1 MIDLFAIVNKGGIVLW--KKTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDR----YTM 54
Query: 60 KWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKE 119
++ + +VFV V+Q + + Y LL F ++ K D RQ+ E
Sbjct: 55 QYQEATQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED--------RQVPNE 106
Query: 120 AEA 122
AE
Sbjct: 107 AEV 109
>sp|Q57739|FTSY_METJA Signal recognition particle receptor FtsY OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=ftsY PE=3 SV=1
Length = 409
Score = 186 bits (472), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 147/239 (61%), Gaps = 12/239 (5%)
Query: 350 NVAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 409
+ A++ A+ IL+ + IDI + K + KP V+VFVG+NG GK+T +AK+AY L Q
Sbjct: 170 TINAVKNAIKNILSQEK-IDIEEIIKKNKAEGKPTVIVFVGINGTGKTTTIAKLAYKLKQ 228
Query: 410 HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVV 469
SV++AA DTFR+GA+EQL HA+ + V + + D A V +AIQ A G DVV
Sbjct: 229 KGYSVVLAAGDTFRAGAIEQLEQHAKNVGVKVIKHKPGADSAAVIYDAIQHAKARGIDVV 288
Query: 470 LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529
L DTAGR N LM + K++ + PDLV+FVG+AL GNDAV Q +FN+ +
Sbjct: 289 LADTAGRQATNVNLMEEIKKVVRVTKPDLVIFVGDALTGNDAVYQAEEFNRAVN------ 342
Query: 530 NPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
IDGI+LTK D D K GAALS+ Y G P++++G GQ Y DL + + +V+ L
Sbjct: 343 ----IDGIILTKVDA-DAKGGAALSIGYAIGKPILYLGVGQRYQDLIEFDADWMVRKLF 396
>sp|Q8TIN7|FTSY_METAC Signal recognition particle receptor FtsY OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=ftsY PE=3 SV=1
Length = 417
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 148/237 (62%), Gaps = 15/237 (6%)
Query: 352 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK 411
AA+++A++ +++ + D V K + KP +VFVG+NG GK+T+++K+ LL+
Sbjct: 194 AALKKAILEVVSAN-TFDFDEYV---KNREKPVHIVFVGINGTGKTTSISKITNRLLKSG 249
Query: 412 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 471
SV++AA DTFR+GA++QL HA RL V + + DPA V +A+Q A + D VL
Sbjct: 250 YSVVLAAGDTFRAGAIDQLGIHANRLGVKMIKHQAGADPAAVIYDAVQYAKAHKIDFVLS 309
Query: 472 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 531
DTAGRM N LM + K+ ++ PDL++FV EA+ GNDAV++ ++FN+ +
Sbjct: 310 DTAGRMHTNMNLMAQMEKICRVSTPDLIIFVDEAVAGNDAVERAAQFNEAVP-------- 361
Query: 532 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
IDG +LTK D D K GAA+S+ Y++G P++F G GQ Y DLKK + + V L
Sbjct: 362 --IDGSILTKIDA-DAKGGAAISIAYITGKPILFFGIGQGYEDLKKFDPEWFVDQLF 415
>sp|P27414|FTSY_SULAC Signal recognition particle receptor FtsY OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=ftsY PE=3 SV=1
Length = 369
Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 143/251 (56%), Gaps = 24/251 (9%)
Query: 336 EPALKALKDRLMTKNVAAMEE-----------ALVRILTPRRSIDILRDVHAAKEQRKPY 384
E L+ LK+ L+ K V+ EE ++ ILT + D++ + ++ +KP+
Sbjct: 117 EKILEDLKNNLIGKKVSRREEVEEIVINTLKKSITEILTKNQKTDLIEKIRSSG--KKPF 174
Query: 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 444
V++F GVNGVGK+T +AKV L ++ +S ++AA DTFR+ A EQL HA +L+V +
Sbjct: 175 VIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQLIRG 234
Query: 445 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504
Y DPA VA +AI A DVVL+DTAGRM + L+ L +++ + PD + + +
Sbjct: 235 KYGADPASVAFDAISFAKSRNIDVVLIDTAGRMHIDSDLVEELKRVLRIAKPDFRILILD 294
Query: 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 564
+L G+DA++Q F + D ++LTK D D K G ALS+ Y PV+
Sbjct: 295 SLAGSDALEQARHFENNVG----------YDAVILTKVDA-DAKGGIALSLAYELKKPVV 343
Query: 565 FVGCGQSYTDL 575
++G GQ+Y DL
Sbjct: 344 YMGVGQNYDDL 354
>sp|D4GYW6|FTSY_HALVD Signal recognition particle receptor FtsY OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=ftsY PE=3 SV=1
Length = 456
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 124/210 (59%), Gaps = 11/210 (5%)
Query: 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 438
E KP ++F G+NGVGK+T +AK+A + + S ++A DT+R+GA EQ+R HA L
Sbjct: 254 EADKPVTLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLANGDTYRAGANEQIREHAEALD 313
Query: 439 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 498
+ DPA V + ++ A + D+VL DTAGR+ + LM L K+ + PDL
Sbjct: 314 KKLIAHEQGGDPAAVIYDGVEYAEAHDIDIVLGDTAGRLHTSNDLMAQLEKIDRVVGPDL 373
Query: 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 558
LFV EA+ G DAV++ +FN A IDG +LTK D D GAA+S+ YV
Sbjct: 374 TLFVDEAVAGQDAVERARQFNDAAA----------IDGAILTKADA-DSNGGAAISIAYV 422
Query: 559 SGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+G P++F+G GQ Y ++K + + +V+ LL
Sbjct: 423 TGKPILFLGVGQGYDHIEKFDPEQMVERLL 452
>sp|Q9HJ93|FTSY_THEAC Signal recognition particle receptor FtsY OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=ftsY PE=3 SV=1
Length = 288
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 121/208 (58%), Gaps = 11/208 (5%)
Query: 381 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 440
+KP+VV+F+G+NG GK+T + K A++L ++ SV++AA DTFR+GA+EQ+ R
Sbjct: 84 KKPFVVLFLGINGTGKTTTIGKFAHYLKRNGKSVVIAAADTFRAGAIEQISLIGREAGTE 143
Query: 441 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500
+ DP+ VA +AI+ A D VL+DTAGRM N+ L+ + K+ ++ PDL L
Sbjct: 144 VIRHDRGSDPSSVAFDAIEHARARNIDYVLIDTAGRMNTNKNLLDEMKKIKRVSKPDLTL 203
Query: 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSG 560
V +A+ G D+V+Q F + + DG+++TK DT D + G+ LS+ +
Sbjct: 204 LVIDAVSGQDSVNQARMFEENVG----------YDGVIVTKLDT-DARGGSILSIYHDLK 252
Query: 561 APVMFVGCGQSYTDLKKLNVKSIVKTLL 588
PV+FV GQ D+ + V+ L+
Sbjct: 253 KPVLFVCTGQGLDDIMPFDRNWYVRKLI 280
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 122/204 (59%), Gaps = 11/204 (5%)
Query: 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT 432
+V A+ ++ P V++ G+ G GK+T AK+A +L + K S +M A D +R A++QL+T
Sbjct: 90 NVPLAQAEQAPTVILMAGLQGTGKTTATAKLALYLRKQKRSALMVATDVYRPAAIDQLKT 149
Query: 433 HARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY 492
+++ VP+F+ G + +P +A++ +++A G D VL+DTAGR+Q + +M L+++
Sbjct: 150 LGQQIDVPVFDLGSDANPVEIARQGVEKAKELGVDTVLIDTAGRLQIDPQMMAELAEIKQ 209
Query: 493 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 552
+ PD L V +A+ G +A + F++++ I G +LTK D D + GAA
Sbjct: 210 VVKPDDTLLVVDAMTGQEAANLTHTFHEQIG----------ITGAILTKLDG-DTRGGAA 258
Query: 553 LSMVYVSGAPVMFVGCGQSYTDLK 576
LS+ +SG P+ FVG G+ L+
Sbjct: 259 LSVRQISGQPIKFVGVGEKVEALQ 282
>sp|Q54431|SRP54_STRMU Signal recognition particle protein OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ffh PE=3 SV=3
Length = 516
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 153/292 (52%), Gaps = 37/292 (12%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA--------------AMEEALV 359
T +F+++ GK L + D++ K ++ L+ +VA A+ ++
Sbjct: 7 TERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVGHEVI 66
Query: 360 RILTP-RRSIDILRDVHAA----------KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 408
L P ++ I I+ + A K + P +++ VG+ G GK+T K+A L+
Sbjct: 67 DTLDPSQQIIKIVNEELTAVLGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLANKLV 126
Query: 409 QHK-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
+ + +M A D +R A++QL+T +++ VP+F+ G E + + + +A N +D
Sbjct: 127 KEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQAKENRND 186
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527
VL+DTAGR+Q +E LM L + L NP+ +L V ++++G +A + +FNQ+L
Sbjct: 187 YVLIDTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQQLE---- 242
Query: 528 SPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLN 579
+ G++LTK D D + GAALS+ ++G P+ F G G+ TD++ +
Sbjct: 243 ------VTGVILTKIDG-DTRGGAALSVRQITGKPIKFTGTGEKITDIETFH 287
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 126/223 (56%), Gaps = 13/223 (5%)
Query: 368 IDILRDVHA--AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG 425
+ ++ + H A+ + P V++ G+ G GK+T AK+A L + S ++ A D +R
Sbjct: 83 VQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRSTLLVATDVYRPA 142
Query: 426 AVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMR 485
A++QL T +++ VP+FE G + +P +A++ +++A + G D V+VDTAGR+Q + +M
Sbjct: 143 AIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQEGIDTVIVDTAGRLQIDTEMME 202
Query: 486 ALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545
L+++ P VL V ++++G +A F++++ I G +LTK D
Sbjct: 203 ELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIG----------ITGAILTKLDG- 251
Query: 546 DDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
D + GAALS+ VSG P+ FVG G+ L+ + + + +L
Sbjct: 252 DSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRIL 294
>sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic
OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
Length = 564
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 113/194 (58%), Gaps = 11/194 (5%)
Query: 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 442
P V++ G+ GVGK+T AK+A +L + S M+ A D +R A++QL ++ VP++
Sbjct: 176 PTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVY 235
Query: 443 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502
G + PA +AK+ ++EA +N DVV++DTAGR+Q ++ +M L + NP VL V
Sbjct: 236 TAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLV 295
Query: 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAP 562
+A+ G +A ++ FN ++ I G +LTK D D + GAALS+ VSG P
Sbjct: 296 VDAMTGQEAAALVTTFNVEIG----------ITGAILTKLDG-DSRGGAALSVKEVSGKP 344
Query: 563 VMFVGCGQSYTDLK 576
+ VG G+ DL+
Sbjct: 345 IKLVGRGERMEDLE 358
>sp|P56005|SRP54_HELPY Signal recognition particle protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ffh PE=3 SV=1
Length = 448
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 131/238 (55%), Gaps = 22/238 (9%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 412
A+E++L+ IL+ + S Q P VV+ G+ G GK+T AK+A++L
Sbjct: 70 ALEKSLLEILSAKGSSGF------TFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNK 123
Query: 413 SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI--VAKEAIQEATRNGSDVVL 470
V++ ACD R AVEQL+ ++ V +F YE++ ++ +A A++ A DV+L
Sbjct: 124 KVLLCACDLQRLAAVEQLKVLGEQVGVEVF---YEENKSVKEIASNALKRAKEAQFDVLL 180
Query: 471 VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 530
VD+AGR+ ++ LM+ L ++ + NP VL+V +AL G D V + FN+++
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEIG------- 233
Query: 531 PQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+ G++L+KFD+ D K G AL + Y G P+ F+G G+ DL + IV L+
Sbjct: 234 ---VSGVVLSKFDS-DSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLM 287
>sp|P49968|SR541_HORVU Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare
GN=SRP54-1 PE=2 SV=1
Length = 497
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 11/207 (5%)
Query: 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 441
KP VV+FVG+ G GK+T K AY+ + + DTFR+GA +QL+ +A + ++P
Sbjct: 100 KPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPF 159
Query: 442 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501
+ E DP +A E ++ + SD++++DT+GR + L + ++ PDLV+F
Sbjct: 160 YGSYMESDPVKIAVEGLERFRKENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIF 219
Query: 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGA 561
V + +G A DQ F Q + + +++TK D K G ALS V + +
Sbjct: 220 VMDGSIGQAAFDQAQAFKQSAS----------VGAVIITKLDG-HAKGGGALSAVAATKS 268
Query: 562 PVMFVGCGQSYTDLKKLNVKSIVKTLL 588
PV+F+G G+ + + +VK V LL
Sbjct: 269 PVIFIGTGEHIDEFEIFDVKPFVSRLL 295
>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare
GN=SRP54-2 PE=2 SV=1
Length = 497
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 11/207 (5%)
Query: 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 441
KP VV+FVG+ G GK+T K AY+ + + DTFR+GA +QL+ +A + ++P
Sbjct: 100 KPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPF 159
Query: 442 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501
+ E DP +A E ++ + SD++++DT+GR + L + ++ PDLV+F
Sbjct: 160 YGSYMESDPVKIAVEGLERFRKENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIF 219
Query: 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGA 561
V + +G A DQ F Q + + +++TK D K G ALS V + +
Sbjct: 220 VMDGSIGQAAFDQAQAFKQSAS----------VGAVIITKLDG-HAKGGGALSAVAATKS 268
Query: 562 PVMFVGCGQSYTDLKKLNVKSIVKTLL 588
PV+F+G G+ + + +VK V LL
Sbjct: 269 PVIFIGTGEHIDEFEIFDVKPFVSRLL 295
>sp|P49967|SR543_ARATH Signal recognition particle 54 kDa protein 3 OS=Arabidopsis
thaliana GN=SRP-54C PE=2 SV=2
Length = 495
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 11/212 (5%)
Query: 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARR 436
A ++ K VV+FVG+ G GK+T K AY+ + + DTFR+GA +QL+ +A +
Sbjct: 95 APKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATK 154
Query: 437 LQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNP 496
++P + E DP +A E + + D+++VDT+GR + L + ++ P
Sbjct: 155 AKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKP 214
Query: 497 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMV 556
DLV+FV ++ +G A DQ F Q +A + +++TK D K G ALS V
Sbjct: 215 DLVIFVMDSSIGQAAFDQAQAFKQSVA----------VGAVIITKMDG-HAKGGGALSAV 263
Query: 557 YVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+ +PV+F+G G+ + + +VK V LL
Sbjct: 264 AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum
lycopersicum PE=2 SV=1
Length = 499
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 11/207 (5%)
Query: 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 441
KP +V+FVG+ G GK+T K AY+ + + DTFR+GA +QL+ +A + ++P
Sbjct: 100 KPSIVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF 159
Query: 442 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501
+ E DP +A + ++ + D+++VDT+GR + L + ++ PDLV+F
Sbjct: 160 YGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIF 219
Query: 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGA 561
V ++ +G A DQ F Q +A + +++TK D K G ALS V + +
Sbjct: 220 VMDSSIGQAAFDQAQAFKQSVA----------VGAVIVTKMDG-HAKGGGALSAVAATKS 268
Query: 562 PVMFVGCGQSYTDLKKLNVKSIVKTLL 588
PV+F+G G+ + + +VK V LL
Sbjct: 269 PVIFIGTGEHMDEFEVFDVKPFVSRLL 295
>sp|P37105|SRP54_BACSU Signal recognition particle protein OS=Bacillus subtilis (strain
168) GN=ffh PE=1 SV=1
Length = 446
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 117/210 (55%), Gaps = 12/210 (5%)
Query: 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQ 438
+R P V++ VG+ G GK+T K+A L + H M+ A D +R A++QL T ++L
Sbjct: 98 KRPPTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLD 157
Query: 439 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 498
+P+F G + P +AK+AI++A D V++DTAGR+ + LM L+ + + NP+
Sbjct: 158 MPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKEIANPEE 217
Query: 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 558
+ V +++ G DAV+ FN++L + G++LTK D D + GAALS+ V
Sbjct: 218 IFLVVDSMTGQDAVNVAKSFNEQLG----------LTGVVLTKLDG-DTRGGAALSIRAV 266
Query: 559 SGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+ P+ F G G+ L+ + + + +L
Sbjct: 267 TNTPIKFAGLGEKLDALEPFHPERMASRIL 296
>sp|P37106|SR541_ARATH Signal recognition particle 54 kDa protein 1 OS=Arabidopsis
thaliana GN=SRP-54A PE=2 SV=1
Length = 479
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 18/236 (7%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 412
A+ + L R+L P + A ++ KP VV+FVG+ G GK+T K AY+ +
Sbjct: 78 AIFKELCRMLDPGKP-------AFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGY 130
Query: 413 SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVD 472
+ DTFR+GA +QL+ +A + ++P + E DP +A E + + D+++VD
Sbjct: 131 KAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVD 190
Query: 473 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 532
T+GR + L + ++ PDLV+FV ++ +G A +Q F + ++
Sbjct: 191 TSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVS--------- 241
Query: 533 LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+ +++TK D K G ALS V + +PV+F+G G+ + + +VK V LL
Sbjct: 242 -VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
>sp|Q9ZK62|SRP54_HELPJ Signal recognition particle protein OS=Helicobacter pylori (strain
J99) GN=ffh PE=3 SV=1
Length = 448
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 131/238 (55%), Gaps = 22/238 (9%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 412
A+E++L+ IL+ + S Q P VV+ G+ G GK+T AK+A++L
Sbjct: 70 ALEKSLLEILSAKGSSGF------TFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNK 123
Query: 413 SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI--VAKEAIQEATRNGSDVVL 470
V++ ACD R AVEQL+ ++ V +F +E++ ++ +A A++ A DV++
Sbjct: 124 KVLLCACDLQRLAAVEQLKVLGEQVGVEVF---HEENKSVKEIANNALKRAKEAQFDVLI 180
Query: 471 VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 530
VD+AGR+ ++ LM+ L ++ + NP VL+V +AL G D V + FN+++
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLNPHEVLYVADALSGQDGVKSANTFNEEIG------- 233
Query: 531 PQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+ G++L+KFD+ D K G AL + Y G P+ F+G G+ DL + IV L+
Sbjct: 234 ---VSGVVLSKFDS-DSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLM 287
>sp|P49970|SR543_HORVU Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare
GN=SRP54-3 PE=2 SV=1
Length = 493
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 11/207 (5%)
Query: 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 441
KP VV+FVG+ G GK+T K A++ + + DTFR+GA +QL+ +A + ++P
Sbjct: 99 KPNVVMFVGLQGSGKTTTCTKYAHYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPF 158
Query: 442 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501
+ E DP +A E +++ + SD++++DT+GR L + ++ PDLV+F
Sbjct: 159 YGSYMESDPVKIAVEGLEKFRQEKSDLIIIDTSGRHMQEAALFEEMRQVAEATKPDLVIF 218
Query: 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGA 561
V + +G A DQ F Q + + +++TK D K G ALS V + +
Sbjct: 219 VMDGSIGQAAFDQAQAFKQSAS----------VGAVIVTKLDG-HAKGGGALSAVAATKS 267
Query: 562 PVMFVGCGQSYTDLKKLNVKSIVKTLL 588
PV+F+G G+ D NV+ V LL
Sbjct: 268 PVIFIGTGEHIDDFDVFNVEPFVARLL 294
>sp|P49971|SR541_SOLLC Signal recognition particle 54 kDa protein 1 OS=Solanum
lycopersicum PE=3 SV=1
Length = 496
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 19/237 (8%)
Query: 353 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 412
A+ L +IL P + L+ + KP VV+FVG+ G GK+T K AY +
Sbjct: 78 AVYNELCKILDPGKPAFTLK-------KGKPSVVMFVGLQGSGKTTTCTKYAYHHQKRGW 130
Query: 413 SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY-EKDPAIVAKEAIQEATRNGSDVVLV 471
+ DTFR+GA +QL+ +A + ++P + Y E DP +A + ++ + D+++V
Sbjct: 131 KPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDGVETFKKENCDLIIV 190
Query: 472 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 531
DT+GR + L + ++ PDLV+FV ++ +G A DQ F Q +A
Sbjct: 191 DTSGRHKQEAALFEEMRQVSEAQKPDLVIFVMDSSIGQAAFDQAQAFRQSVA-------- 242
Query: 532 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+ +++TK D K G ALS V + +PV+F+G G+ + + +VK V LL
Sbjct: 243 --VGAVIVTKMDG-HAKGGGALSRVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 296
>sp|P10121|FTSY_ECOLI Signal recognition particle receptor FtsY OS=Escherichia coli
(strain K12) GN=ftsY PE=1 SV=1
Length = 497
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 17/216 (7%)
Query: 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 438
E + P+V++ VGVNGVGK+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 348
Query: 439 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 492
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 349 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 408
Query: 493 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 552
+ P V+ +A G +AV Q F++ + + GI LTK D K G
Sbjct: 409 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGT-AKGGVI 457
Query: 553 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
S+ G P+ ++G G+ DL+ ++ L
Sbjct: 458 FSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 493
>sp|P44870|FTSY_HAEIN Signal recognition particle receptor FtsY OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsY PE=3
SV=1
Length = 414
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 20/229 (8%)
Query: 369 DILRDVHAAKE---QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG 425
DIL V E +KPYV++ VGVNGVGK+T + K+A SVM+AA DTFR+
Sbjct: 192 DILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAA 251
Query: 426 AVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMR 485
AVEQL+ R +P+ + D A V +A+Q A D+++ DTAGR+Q+ LM
Sbjct: 252 AVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMD 311
Query: 486 ALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 539
L K++ + P ++ +A G +A+ Q FN+ + + GI L
Sbjct: 312 ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVG----------LTGISL 361
Query: 540 TKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
TK D K G ++ P+ ++G G+ DL++ N K ++ L
Sbjct: 362 TKLDGT-AKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEALF 409
>sp|Q726P7|FTSY_DESVH Signal recognition particle receptor FtsY OS=Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ftsY
PE=3 SV=1
Length = 488
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 111/213 (52%), Gaps = 19/213 (8%)
Query: 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 442
P VV+ +GVNGVGK+T +AK+AY V++AA DTFR+ A+EQL A+R+ +
Sbjct: 280 PEVVLLIGVNGVGKTTTIAKLAYRAQLQGRKVLIAAGDTFRAAAIEQLEIWAKRVGAGFY 339
Query: 443 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLI------YLNNP 496
K DPA VA EA+ +A G D++LVDTAGR+ LM L K+ + P
Sbjct: 340 AKTAGADPAAVAYEAMDKAVSEGYDLLLVDTAGRLHTKANLMEELHKIRKVLGRKHPGAP 399
Query: 497 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD-TIDDKVGAALSM 555
+ V +A G +A+ Q FN+ +D I+LTK D T + A++M
Sbjct: 400 HRSILVIDATTGQNALSQTKLFNEACG----------VDEIVLTKLDGTAKGGIVVAVAM 449
Query: 556 VYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+ G P+ +VG G+ D++ N LL
Sbjct: 450 QF--GIPITYVGLGEKMEDMRPFNGSDFAMALL 480
>sp|Q75K18|SRP54_DICDI Signal recognition particle 54 kDa protein OS=Dictyostelium
discoideum GN=srp54 PE=1 SV=1
Length = 542
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 134/258 (51%), Gaps = 20/258 (7%)
Query: 331 DKADLEPALKALKDRLMTKNVAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVG 390
DK L+ L R + K V E L+R+L P + + + K +V+FVG
Sbjct: 58 DKIKLDQMAAGLNKRKIIKQVVFDE--LIRLLDP--GVPLWKPTKG-----KSNIVMFVG 108
Query: 391 VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDP 450
+ G GK+T++ K+AY+ + S + DTFR+GA +Q+R +A + ++ + EKDP
Sbjct: 109 LQGAGKTTSVTKLAYFYKKKGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSETEKDP 168
Query: 451 AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510
+VA+ + ++G+++++VDT+GR + + L + ++ PD +FV ++ +G
Sbjct: 169 VVVARTGVDIFKKDGTEIIIVDTSGRHKQDSELFEEMKQIETAVKPDNCIFVMDSSIGQA 228
Query: 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570
A +Q + F + + I++TK D + G A+S V + P++F+G G+
Sbjct: 229 AYEQATAFRSSVK----------VGSIIITKMDG-NSMGGGAISAVAATNTPIIFIGTGE 277
Query: 571 SYTDLKKLNVKSIVKTLL 588
TDL+ + + V LL
Sbjct: 278 HLTDLELFDPSTFVSKLL 295
>sp|P20424|SRP54_YEAST Signal recognition particle subunit SRP54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP54 PE=1
SV=2
Length = 541
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 119/210 (56%), Gaps = 11/210 (5%)
Query: 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 438
++RK +++FVG+ G GK+T+ K+A + + V + DTFR+GA +QL+ +A R +
Sbjct: 105 KKRKTNIIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRAR 164
Query: 439 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 498
+P + E DPA VA+E I + + D+++VDT+GR E L + + ++ + P+
Sbjct: 165 IPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQ 224
Query: 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 558
+ V +A +G A +Q SK ++ +D + I+LTK D + G A+S V
Sbjct: 225 TIMVLDASIG-QAAEQQSKAFKESSDFGA---------IILTKMDG-HARGGGAISAVAA 273
Query: 559 SGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+ P++F+G G+ DL+K + KS + LL
Sbjct: 274 TNTPIIFIGTGEHIHDLEKFSPKSFISKLL 303
>sp|O67066|FTSY_AQUAE Signal recognition particle receptor FtsY OS=Aquifex aeolicus
(strain VF5) GN=ftsY PE=3 SV=1
Length = 461
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 111/210 (52%), Gaps = 17/210 (8%)
Query: 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 444
V++FVGVNG GK+T + K+A+ L Q V++ A DTFR+ A+EQL A+R V I +K
Sbjct: 262 VLLFVGVNGSGKTTTIGKLAHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDIVKK 321
Query: 445 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDL 498
DP V E +++A G +VVLVDTAGR+ EPL+ L K+ + P
Sbjct: 322 EEGSDPGAVVYEGMKKAKEEGYEVVLVDTAGRLHTKEPLINELRKIKKVIQKFDKEEPSE 381
Query: 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 558
L V +A G +A+ Q F + + I GI++TK D K GA +++
Sbjct: 382 TLLVIDATTGQNAIQQAKVFKEAVD----------ITGIVVTKLDG-SAKGGAVVAICRE 430
Query: 559 SGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
P+ VG G+ DL+ + + V+ LL
Sbjct: 431 LKIPIKLVGVGEGIDDLQPFDADAYVEALL 460
>sp|P0AGD7|SRP54_ECOLI Signal recognition particle protein OS=Escherichia coli (strain
K12) GN=ffh PE=1 SV=1
Length = 453
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 154/301 (51%), Gaps = 37/301 (12%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA--AMEEALVRI---------- 361
T S ++I+G+ L + +++ L+ ++ L+ +VA + E + R+
Sbjct: 6 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN 65
Query: 362 --LTP-RRSIDILRD--VHAAKEQRK--------PYVVVFVGVNGVGKSTNLAKVAYWLL 408
LTP + + I+R+ V A E+ + P VV+ G+ G GK+T++ K+ +L
Sbjct: 66 KSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR 125
Query: 409 Q-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
+ HK V++ + D +R A++QL T A ++ V F + P + A++EA D
Sbjct: 126 EKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYD 185
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527
V+LVDTAGR+ +E +M + ++ NP LFV +A+ G DA + FN+ L
Sbjct: 186 VLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP---- 241
Query: 528 SPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTL 587
+ G++LTK D D + GAALS+ +++G P+ F+G G+ L+ + I +
Sbjct: 242 ------LTGVVLTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294
Query: 588 L 588
L
Sbjct: 295 L 295
>sp|P0AGD8|SRP54_ECOL6 Signal recognition particle protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ffh PE=3 SV=1
Length = 453
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 154/301 (51%), Gaps = 37/301 (12%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA--AMEEALVRI---------- 361
T S ++I+G+ L + +++ L+ ++ L+ +VA + E + R+
Sbjct: 6 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN 65
Query: 362 --LTP-RRSIDILRD--VHAAKEQRK--------PYVVVFVGVNGVGKSTNLAKVAYWLL 408
LTP + + I+R+ V A E+ + P VV+ G+ G GK+T++ K+ +L
Sbjct: 66 KSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR 125
Query: 409 Q-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
+ HK V++ + D +R A++QL T A ++ V F + P + A++EA D
Sbjct: 126 EKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYD 185
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527
V+LVDTAGR+ +E +M + ++ NP LFV +A+ G DA + FN+ L
Sbjct: 186 VLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP---- 241
Query: 528 SPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTL 587
+ G++LTK D D + GAALS+ +++G P+ F+G G+ L+ + I +
Sbjct: 242 ------LTGVVLTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294
Query: 588 L 588
L
Sbjct: 295 L 295
>sp|P0AGD9|SRP54_ECO57 Signal recognition particle protein OS=Escherichia coli O157:H7
GN=ffh PE=3 SV=1
Length = 453
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 154/301 (51%), Gaps = 37/301 (12%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA--AMEEALVRI---------- 361
T S ++I+G+ L + +++ L+ ++ L+ +VA + E + R+
Sbjct: 6 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN 65
Query: 362 --LTP-RRSIDILRD--VHAAKEQRK--------PYVVVFVGVNGVGKSTNLAKVAYWLL 408
LTP + + I+R+ V A E+ + P VV+ G+ G GK+T++ K+ +L
Sbjct: 66 KSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR 125
Query: 409 Q-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD 467
+ HK V++ + D +R A++QL T A ++ V F + P + A++EA D
Sbjct: 126 EKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYD 185
Query: 468 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527
V+LVDTAGR+ +E +M + ++ NP LFV +A+ G DA + FN+ L
Sbjct: 186 VLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP---- 241
Query: 528 SPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTL 587
+ G++LTK D D + GAALS+ +++G P+ F+G G+ L+ + I +
Sbjct: 242 ------LTGVVLTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294
Query: 588 L 588
L
Sbjct: 295 L 295
>sp|Q01442|SRP54_MYCMY Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh
PE=1 SV=1
Length = 447
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 114/196 (58%), Gaps = 13/196 (6%)
Query: 381 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA-ACDTFRSGAVEQLRTHARRLQV 439
+KP VV+ VG+ G GK+T K+AY L + ++ D +R GA+EQL ++
Sbjct: 99 KKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNT 158
Query: 440 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499
+FEKG ++DP A++A++ A N DVV++DTAGR+Q ++ LM+ L L +P+ +
Sbjct: 159 QVFEKG-KQDPVKTAEQALEYAKENNFDVVILDTAGRLQVDQVLMKELDNLKKKTSPNEI 217
Query: 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVS 559
L V + + G + ++ ++FN KL + G+++TK D D + GA LS+ Y++
Sbjct: 218 LLVVDGMSGQEIINVTNEFNDKLK----------LSGVVVTKLDG-DARGGATLSISYLT 266
Query: 560 GAPVMFVGCGQSYTDL 575
P+ F+G G+ Y L
Sbjct: 267 KLPIKFIGEGEGYNAL 282
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 11/209 (5%)
Query: 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 439
+ KP +++ VG+ G GK+T +AK+A + + V + DT+R GA QLR R +
Sbjct: 97 KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI 156
Query: 440 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499
+F EKD +AKE + G D+++VDTAGR ++++ L+ + ++ + +P V
Sbjct: 157 EVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEV 216
Query: 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVS 559
+ V + +G A +NQ LA ++P I I++TK D K G ALS V +
Sbjct: 217 ILVIDGTIGQQA------YNQALAFKEATP----IGSIIVTKLDG-SAKGGGALSAVAAT 265
Query: 560 GAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
GAP+ F+G G+ D++ + V LL
Sbjct: 266 GAPIKFIGTGEKIDDIEPFDPPRFVSRLL 294
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 11/209 (5%)
Query: 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 439
+ KP V++ VG+ G GK+T++AK+A + + V + DT+R GA +QL+ +
Sbjct: 97 KEKPTVLLTVGIQGSGKTTSIAKLARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGI 156
Query: 440 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499
+F EKD +AKE ++ G D+++VD+AGR ++ + L+ + ++ P V
Sbjct: 157 EVFGDPEEKDAIKLAKEGVEHFREKGVDIIIVDSAGRHKEEKSLIEEMKQISAAIKPHEV 216
Query: 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVS 559
+ V + +G A +NQ LA ++P I I++TK D K G ALS V +
Sbjct: 217 ILVIDGTIGQQA------YNQALAFKEATP----IGSIIVTKLDG-SAKGGGALSAVAAT 265
Query: 560 GAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
GAP+ F+G G+ DL+ + K V LL
Sbjct: 266 GAPIKFIGVGERIDDLEPFDPKRFVSRLL 294
>sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa protein OS=Geodia cydonium
GN=SRP54 PE=2 SV=1
Length = 499
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 112/204 (54%), Gaps = 11/204 (5%)
Query: 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 444
V++FVG+ G GK+T K+AY + + DTFR+GA +QL+ +A + +VP +
Sbjct: 102 VIMFVGLQGSGKTTTCTKLAYHYQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFYGS 161
Query: 445 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504
E DP ++A+E +++ + +V++VDT+GR + E L + ++ +PD ++FV +
Sbjct: 162 YTEMDPVVIAQEGVEKFKEDSFEVIIVDTSGRHKQEESLFEEMLQVSQAIDPDNIIFVMD 221
Query: 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 564
+G Q F +K+ D++S +++TK D K G ALS V + +P++
Sbjct: 222 GTIGQACESQARAFKEKV-DVAS---------VIVTKLDG-HAKGGGALSAVAATRSPII 270
Query: 565 FVGCGQSYTDLKKLNVKSIVKTLL 588
F+G G+ +++ K V LL
Sbjct: 271 FIGTGEHIDEMEPFKTKPFVSKLL 294
>sp|Q8CWX8|FTSY_STRMU Signal recognition particle receptor FtsY OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ftsY PE=3
SV=1
Length = 498
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 17/211 (8%)
Query: 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 444
V++FVGVNGVGK+T++ K+AY VM+ A DTFR+GAV QL RR+ VP+
Sbjct: 296 VMLFVGVNGVGKTTSIGKLAYKYKHQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTG 355
Query: 445 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKL------IYLNNPDL 498
DPA V + ++ A D++++DTAGR+Q+ + LM L K+ + + P
Sbjct: 356 PKNADPASVVYDGVERAVAADVDILMIDTAGRLQNKDNLMAELEKIGRVVKRVIPDAPHE 415
Query: 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 558
L +A G +A+ Q +F+ K+ L+ G++LTK D K G L++
Sbjct: 416 TLLTLDASTGQNALVQAKEFS-KITPLT---------GLILTKIDGT-AKGGVVLAIRQE 464
Query: 559 SGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589
PV F+G G+ D+ + + + ++ LL+
Sbjct: 465 LAIPVKFIGFGEKIDDIGEFHSEDFMRGLLE 495
>sp|P51835|FTSY_BACSU Signal recognition particle receptor FtsY OS=Bacillus subtilis
(strain 168) GN=ftsY PE=1 SV=2
Length = 329
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 113/210 (53%), Gaps = 17/210 (8%)
Query: 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 444
V++ VGVNGVGK+T + K+A+ + Q SV++AA DTFR+GA+EQL R VP+ ++
Sbjct: 122 VILLVGVNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQ 181
Query: 445 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDL 498
DPA V +A+ A +DV++ DTAGR+Q+ LM+ L K+ + P
Sbjct: 182 TAGSDPAAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHE 241
Query: 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 558
VL +A G +A+ Q +F S + N + GI LTK D K G L++
Sbjct: 242 VLLALDATTGQNAMAQAKEF-------SKATN---VTGIALTKLDGT-AKGGIVLAIRNE 290
Query: 559 SGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
PV VG G+ DL++ + +S V L
Sbjct: 291 LHIPVKLVGLGEKVDDLQEFDPESYVYGLF 320
>sp|P44518|SRP54_HAEIN Signal recognition particle protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ffh PE=3
SV=1
Length = 462
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 41/300 (13%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA--------------AMEEALVRIL 362
S ++I GK L + +++ L+ ++ L+ +VA A+ E + + L
Sbjct: 9 LSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALGEEVNKSL 68
Query: 363 TPRRSIDILRDVHAAKEQ-------------RKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 409
TP + + L+ V E+ + P V++ G+ G GK+T++ K+A +L +
Sbjct: 69 TPGQ--EFLKIVQRELEKAMGEANESLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLRE 126
Query: 410 -HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDV 468
HK V++ + D +R A++QL T A+ + V F +++P +AK A+ +A DV
Sbjct: 127 RHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAKLKFYDV 186
Query: 469 VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528
++VDTAGR+ + +M + ++ NP LF +A+ G DA + FN+ L
Sbjct: 187 LIVDTAGRLHVDTEMMDEIKQVHAALNPIETLFTVDAMTGQDAANTAKAFNEALP----- 241
Query: 529 PNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+ G++LTK D D + GAALS+ ++G P+ F+G G+ L+ + + +L
Sbjct: 242 -----LTGVILTKVDG-DARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRIL 295
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 11/209 (5%)
Query: 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 439
+ KP V++ VG+ G GK+T++AK+A +L + V + DT+R GA QLR +
Sbjct: 97 KHKPTVILTVGIQGSGKTTSVAKLARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGI 156
Query: 440 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499
+F EKD +A+E ++ G DV++VD+AGR ++ + L+ + ++ P V
Sbjct: 157 EVFGDPEEKDAVKLAREGVEHFREKGVDVIIVDSAGRHKEEKGLIEEMRQISEAIKPHEV 216
Query: 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVS 559
+ V + +G A +NQ +A ++P I I++TK D K G ALS V +
Sbjct: 217 ILVIDGTIGQQA------YNQAMAFKEATP----IGSIIVTKLDG-SAKGGGALSAVAAT 265
Query: 560 GAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
GAP+ F+G G+ DL+ + K V LL
Sbjct: 266 GAPIKFIGTGERIDDLEPFDPKRFVSRLL 294
>sp|O15821|SRP54_ENTHI Signal recognition particle 54 kDa protein OS=Entamoeba histolytica
PE=3 SV=1
Length = 487
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 11/207 (5%)
Query: 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 441
K V++ VG+ G GK+T + K+A + + DTFR+GA EQL+ +A+R VP
Sbjct: 100 KTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPF 159
Query: 442 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501
F E DP VA E ++ + +D++LVDT+GR + ++ L + + + PD ++F
Sbjct: 160 FGIKEESDPVKVASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRDAIKPDSIIF 219
Query: 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGA 561
V + +G A Q F + + +++TK D + G ALS V + +
Sbjct: 220 VMDGAIGQAAFGQAKAFKDAVE----------VGSVIITKLDGHSNG-GGALSAVAATKS 268
Query: 562 PVMFVGCGQSYTDLKKLNVKSIVKTLL 588
P++F+G G+ ++++ + +S V+ LL
Sbjct: 269 PIIFIGTGEKVNEIEEFDAESFVRQLL 295
>sp|Q57565|SRP54_METJA Signal recognition particle 54 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp54 PE=1 SV=1
Length = 451
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 116/209 (55%), Gaps = 13/209 (6%)
Query: 381 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 440
+K V++ VG+ G GK+T AK+A ++ + + + A DT+R A EQL+ A ++ VP
Sbjct: 98 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVP 157
Query: 441 IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499
I+ ++ K P + KE +++ + +DV+++DTAGR ++ + L+ + ++ + NPD +
Sbjct: 158 IYGDETRTKSPVDIVKEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEI 215
Query: 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVS 559
+ V + +G A Q F + + ++ S I++TK D K G ALS V +
Sbjct: 216 ILVIDGTIGQQAGIQAKAFKEAVGEIGS---------IIVTKLDG-SAKGGGALSAVAET 265
Query: 560 GAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
AP+ F+G G+ DL+ + K + LL
Sbjct: 266 KAPIKFIGIGEGIDDLEPFDPKKFISRLL 294
>sp|Q68VX4|FTSY_RICTY Signal recognition particle receptor FtsY OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=ftsY PE=3 SV=1
Length = 303
Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 17/206 (8%)
Query: 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 439
+ K +++ GVNGVGK+T + K++ V +AACDTFR+ A+ QL + R
Sbjct: 98 ENKLNIILICGVNGVGKTTTIGKLSALYSAQGKKVAVAACDTFRAAAINQLSSWVDRANA 157
Query: 440 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------ 493
+ DPA VA AIQE+ + D++ +DTAGR+ +N+ LM LSK++ +
Sbjct: 158 LLITGEVSADPASVAYRAIQESIKQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDE 217
Query: 494 NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAAL 553
N P + + +A+ G + +Q+ FN D+++ + G+++TK D K G +
Sbjct: 218 NAPTHSILIIDAVTGQNTYNQIEYFN----DVTN------LTGLIITKLDG-SAKAGVLV 266
Query: 554 SMVYVSGAPVMFVGCGQSYTDLKKLN 579
V P+ F+G G+ DLK N
Sbjct: 267 GAVQKFNLPIYFIGIGEQIEDLKIFN 292
>sp|P21565|SRP54_SCHPO Signal recognition particle 54 kDa protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp54 PE=1 SV=1
Length = 522
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 11/203 (5%)
Query: 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 441
+P V++ VG+ G GK+T +K+A + + + A DTFR+GA +QL+ +A + +VP
Sbjct: 100 RPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPY 159
Query: 442 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501
F E DP ++AKE + + + DV++VDT+GR Q + L + ++ PD +
Sbjct: 160 FGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIM 219
Query: 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGA 561
+ +A +G A Q SK ++ AD + +++TK D K G ALS V +
Sbjct: 220 ILDASIGQAAESQ-SKAFKETADFGA---------VIITKLDG-HAKGGGALSAVAATKT 268
Query: 562 PVMFVGCGQSYTDLKKLNVKSIV 584
P++F+G G+ DL++ + +S +
Sbjct: 269 PIVFIGTGEHINDLERFSPRSFI 291
>sp|A4WLQ3|SRP54_PYRAR Signal recognition particle 54 kDa protein OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3
SV=1
Length = 433
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 112/211 (53%), Gaps = 13/211 (6%)
Query: 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL 437
K +KPY+V+ +GV G GK+T AK+A +L++ V M DT R A +QLR A ++
Sbjct: 94 KPTKKPYIVLLLGVEGSGKTTTSAKLARYLMKRGYKVGMVETDTIRPAAFDQLRQLAEKI 153
Query: 438 QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 497
P + + KD +A+ + A G DV+++DTAGR ++ E L++ + + NPD
Sbjct: 154 GAPFYGERDGKDAVEIARRGV--ANLKGVDVLIIDTAGRHRNEEALLQEVKAIYDAVNPD 211
Query: 498 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVY 557
V+ V +A VG A Q F + L I +++TK D+ + G AL+ V
Sbjct: 212 EVVLVVDATVGKLAAAQAEAFMKYLP----------IHTVIITKMDS-TARGGGALAAVA 260
Query: 558 VSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588
+GA V F+G G+ +L+ N + V LL
Sbjct: 261 KTGARVKFIGVGEDVEELEPFNPRKFVARLL 291
>sp|Q9RS67|FTSY_DEIRA Signal recognition particle receptor FtsY OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=ftsY PE=3 SV=1
Length = 317
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 129/251 (51%), Gaps = 27/251 (10%)
Query: 354 MEEALVRILTPR----------RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 403
+++AL+R LT + R + DV +K K +VV+ +GVNGVGK+T +AK+
Sbjct: 71 LQDALMRALTLQLEPNARRAQFRELGFSPDVSRSKVDPKGHVVMVIGVNGVGKTTTIAKL 130
Query: 404 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463
+ ++ SVM AA DTFR+ A QL RL VP+ + DPA VA +A
Sbjct: 131 GQYYMERGQSVMFAAGDTFRAAAGTQLGVWGERLGVPVIQGVDGGDPAAVAFDAAGARKA 190
Query: 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSK 517
G+D++ VDTAGR+ + LM L K+ + P V V +A+ G + + Q K
Sbjct: 191 RGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPAEVWLVLDAVTGQNGLQQAKK 250
Query: 518 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKK 577
F++ ++P + G+++TK D K G + +V G P+ F+G G+ DL+
Sbjct: 251 FHE------ATP----LTGVVVTKLDGT-AKGGILVPIVRELGVPIKFIGVGEQPGDLQP 299
Query: 578 LNVKSIVKTLL 588
+ + V+ L
Sbjct: 300 FDSQEFVRALF 310
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,804,965
Number of Sequences: 539616
Number of extensions: 9695365
Number of successful extensions: 35793
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 280
Number of HSP's that attempted gapping in prelim test: 34684
Number of HSP's gapped (non-prelim): 982
length of query: 589
length of database: 191,569,459
effective HSP length: 123
effective length of query: 466
effective length of database: 125,196,691
effective search space: 58341658006
effective search space used: 58341658006
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)