Query 007789
Match_columns 589
No_of_seqs 458 out of 3606
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 15:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0781 Signal recognition par 100.0 1E-104 3E-109 836.0 35.3 537 1-589 1-587 (587)
2 COG0552 FtsY Signal recognitio 100.0 4.1E-50 8.9E-55 413.5 22.5 251 328-589 58-340 (340)
3 COG0541 Ffh Signal recognition 100.0 8.2E-49 1.8E-53 414.3 25.6 264 315-589 7-295 (451)
4 KOG0780 Signal recognition par 100.0 4.1E-43 8.9E-48 363.4 21.8 258 314-589 7-296 (483)
5 TIGR01425 SRP54_euk signal rec 100.0 1.7E-42 3.8E-47 373.1 25.5 264 315-589 7-295 (429)
6 PRK14974 cell division protein 100.0 2.8E-41 6E-46 355.4 25.5 262 312-589 45-335 (336)
7 PRK10867 signal recognition pa 100.0 2.6E-39 5.7E-44 350.1 25.0 263 316-589 8-296 (433)
8 PRK00771 signal recognition pa 100.0 3.5E-38 7.5E-43 342.0 25.3 261 316-589 4-288 (437)
9 TIGR00959 ffh signal recogniti 100.0 8.6E-38 1.9E-42 338.2 25.3 265 314-589 5-295 (428)
10 PRK10416 signal recognition pa 100.0 2.1E-37 4.6E-42 324.5 25.2 258 317-589 31-315 (318)
11 PF00448 SRP54: SRP54-type pro 100.0 7.2E-38 1.6E-42 307.3 19.1 196 383-589 1-196 (196)
12 PF04086 SRP-alpha_N: Signal r 100.0 1.4E-39 3E-44 335.3 5.4 115 27-147 1-124 (279)
13 TIGR00064 ftsY signal recognit 100.0 1.4E-35 3.1E-40 304.7 22.6 199 379-588 68-272 (272)
14 PRK14723 flhF flagellar biosyn 100.0 1.7E-32 3.6E-37 311.5 22.2 204 370-589 174-380 (767)
15 COG1419 FlhF Flagellar GTP-bin 100.0 5.5E-32 1.2E-36 286.4 19.6 191 380-589 202-395 (407)
16 PRK11889 flhF flagellar biosyn 100.0 1.3E-31 2.9E-36 283.8 22.4 246 316-589 179-434 (436)
17 PRK12726 flagellar biosynthesi 100.0 6.9E-31 1.5E-35 277.6 23.1 240 329-589 155-399 (407)
18 PRK06995 flhF flagellar biosyn 100.0 2.4E-31 5.2E-36 290.7 19.4 254 314-589 176-448 (484)
19 PRK06731 flhF flagellar biosyn 100.0 7.2E-31 1.6E-35 269.1 20.6 242 332-589 8-268 (270)
20 PRK12723 flagellar biosynthesi 100.0 2.1E-30 4.4E-35 277.7 21.8 192 381-589 172-369 (388)
21 PRK12724 flagellar biosynthesi 100.0 2.7E-30 5.9E-35 276.8 20.0 244 327-588 145-415 (432)
22 PRK14722 flhF flagellar biosyn 100.0 5.8E-29 1.3E-33 264.8 23.1 211 368-589 124-338 (374)
23 PRK14721 flhF flagellar biosyn 100.0 1.2E-28 2.6E-33 266.0 19.2 192 379-589 189-383 (420)
24 PRK05703 flhF flagellar biosyn 100.0 2.1E-27 4.6E-32 258.0 22.1 192 379-589 219-414 (424)
25 COG1126 GlnQ ABC-type polar am 99.9 1.7E-26 3.7E-31 225.9 11.3 184 367-573 14-216 (240)
26 COG1120 FepC ABC-type cobalami 99.9 3E-26 6.4E-31 232.3 13.1 183 368-573 15-219 (258)
27 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 3.3E-26 7.2E-31 231.1 11.4 161 369-544 18-199 (254)
28 PRK12727 flagellar biosynthesi 99.9 6.6E-25 1.4E-29 240.5 21.4 190 379-588 348-540 (559)
29 COG1127 Ttg2A ABC-type transpo 99.9 4.6E-26 1E-30 225.9 8.3 162 368-541 21-204 (263)
30 COG1116 TauB ABC-type nitrate/ 99.9 3.7E-25 8.1E-30 221.3 11.8 162 368-541 16-189 (248)
31 COG1131 CcmA ABC-type multidru 99.9 1E-25 2.3E-30 234.1 6.7 162 368-541 18-195 (293)
32 COG1136 SalX ABC-type antimicr 99.9 6.9E-25 1.5E-29 218.5 10.6 180 368-570 18-219 (226)
33 COG2884 FtsE Predicted ATPase 99.9 1.5E-23 3.3E-28 201.4 14.0 183 368-573 15-217 (223)
34 COG1125 OpuBA ABC-type proline 99.9 7.2E-24 1.6E-28 211.5 11.8 198 368-588 14-236 (309)
35 COG4152 ABC-type uncharacteriz 99.9 3.5E-24 7.5E-29 212.6 9.4 190 369-567 16-229 (300)
36 COG1135 AbcC ABC-type metal io 99.9 6.4E-24 1.4E-28 217.2 11.3 185 367-573 18-222 (339)
37 COG4555 NatA ABC-type Na+ tran 99.9 4.2E-24 9E-29 206.9 7.7 181 358-549 7-203 (245)
38 COG3842 PotA ABC-type spermidi 99.9 4.7E-24 1E-28 224.9 8.8 163 367-541 17-195 (352)
39 COG3638 ABC-type phosphate/pho 99.9 8.6E-24 1.9E-28 209.3 8.2 162 367-540 16-205 (258)
40 COG3839 MalK ABC-type sugar tr 99.9 1.4E-23 3E-28 220.3 9.7 163 370-545 18-195 (338)
41 COG1124 DppF ABC-type dipeptid 99.9 3.4E-23 7.4E-28 206.1 11.6 185 369-576 21-225 (252)
42 PRK13537 nodulation ABC transp 99.9 9.5E-24 2.1E-28 220.6 6.3 161 368-541 20-196 (306)
43 COG4175 ProV ABC-type proline/ 99.9 4.4E-23 9.5E-28 211.1 9.8 198 360-572 33-252 (386)
44 COG1117 PstB ABC-type phosphat 99.9 7.8E-23 1.7E-27 199.7 10.7 160 368-542 20-207 (253)
45 PRK13536 nodulation factor exp 99.9 2.1E-23 4.5E-28 221.1 6.6 160 369-541 55-230 (340)
46 COG1122 CbiO ABC-type cobalt t 99.9 2E-22 4.3E-27 203.1 12.4 184 368-573 17-219 (235)
47 TIGR01188 drrA daunorubicin re 99.9 1.3E-22 2.8E-27 211.4 10.8 160 369-541 7-182 (302)
48 TIGR01166 cbiO cobalt transpor 99.9 1.3E-22 2.9E-27 196.8 10.1 158 369-541 6-185 (190)
49 cd03259 ABC_Carb_Solutes_like 99.9 1.3E-22 2.8E-27 200.2 9.8 161 369-541 14-189 (213)
50 TIGR02314 ABC_MetN D-methionin 99.9 1.3E-22 2.8E-27 215.2 10.3 162 368-541 18-199 (343)
51 cd03226 ABC_cobalt_CbiO_domain 99.9 3E-22 6.5E-27 196.6 12.1 159 369-541 14-184 (205)
52 TIGR00960 3a0501s02 Type II (G 99.9 1.8E-22 3.8E-27 199.7 10.5 160 369-541 17-196 (216)
53 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.5E-22 3.2E-27 201.0 9.5 161 369-541 18-190 (220)
54 cd03261 ABC_Org_Solvent_Resist 99.9 1.8E-22 3.9E-27 202.3 9.9 161 369-541 14-195 (235)
55 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.2E-22 4.7E-27 199.1 10.3 161 369-541 18-199 (218)
56 COG0411 LivG ABC-type branched 99.9 1.7E-22 3.8E-27 201.1 8.7 184 368-573 17-230 (250)
57 cd03265 ABC_DrrA DrrA is the A 99.9 3E-22 6.4E-27 198.8 10.4 182 369-572 14-211 (220)
58 COG0410 LivF ABC-type branched 99.9 3.2E-22 7E-27 197.8 10.4 187 367-571 15-223 (237)
59 PRK11629 lolD lipoprotein tran 99.9 2.8E-22 6.1E-27 200.8 10.1 161 369-541 23-204 (233)
60 PRK11650 ugpC glycerol-3-phosp 99.9 2.9E-22 6.3E-27 213.6 10.7 162 368-541 17-193 (356)
61 COG1137 YhbG ABC-type (unclass 99.9 6.6E-23 1.4E-27 198.4 5.0 180 369-571 18-217 (243)
62 cd03235 ABC_Metallic_Cations A 99.9 3.4E-22 7.4E-27 197.2 10.1 160 369-541 13-190 (213)
63 cd03225 ABC_cobalt_CbiO_domain 99.9 3.8E-22 8.2E-27 196.4 10.3 160 369-541 15-192 (211)
64 TIGR02673 FtsE cell division A 99.9 4.8E-22 1E-26 196.1 10.9 160 369-541 16-195 (214)
65 TIGR02211 LolD_lipo_ex lipopro 99.9 3.2E-22 6.8E-27 198.4 9.6 162 368-541 18-200 (221)
66 COG1118 CysA ABC-type sulfate/ 99.9 6.3E-22 1.4E-26 202.3 11.2 181 368-570 15-215 (345)
67 cd03301 ABC_MalK_N The N-termi 99.9 5.9E-22 1.3E-26 195.3 10.7 161 369-541 14-189 (213)
68 TIGR01288 nodI ATP-binding ABC 99.9 4.9E-22 1.1E-26 207.2 10.5 160 369-541 18-193 (303)
69 cd03296 ABC_CysA_sulfate_impor 99.9 5.5E-22 1.2E-26 199.4 10.1 161 369-541 16-195 (239)
70 PRK11432 fbpC ferric transport 99.9 6.6E-22 1.4E-26 210.5 11.0 161 369-541 20-195 (351)
71 cd03292 ABC_FtsE_transporter F 99.9 7.6E-22 1.7E-26 194.5 10.6 160 369-541 15-194 (214)
72 cd03268 ABC_BcrA_bacitracin_re 99.9 5.9E-22 1.3E-26 194.8 9.4 179 369-571 14-204 (208)
73 PRK13647 cbiO cobalt transport 99.9 7.6E-22 1.6E-26 203.0 10.6 160 369-541 19-196 (274)
74 TIGR01186 proV glycine betaine 99.9 6.6E-22 1.4E-26 211.2 10.3 161 369-541 7-188 (363)
75 TIGR02315 ABC_phnC phosphonate 99.9 7.1E-22 1.5E-26 198.6 9.9 161 369-541 16-204 (243)
76 PRK10851 sulfate/thiosulfate t 99.9 6.8E-22 1.5E-26 210.5 10.1 161 369-541 16-195 (353)
77 PRK10584 putative ABC transpor 99.9 7.8E-22 1.7E-26 196.6 9.8 161 369-541 24-205 (228)
78 TIGR03608 L_ocin_972_ABC putat 99.9 1.2E-21 2.6E-26 192.0 10.8 160 369-541 12-192 (206)
79 cd03269 ABC_putative_ATPase Th 99.9 6.6E-22 1.4E-26 194.7 9.0 160 369-541 14-186 (210)
80 cd03115 SRP The signal recogni 99.9 9.9E-21 2.1E-25 180.9 16.8 173 384-567 1-173 (173)
81 TIGR03265 PhnT2 putative 2-ami 99.9 7E-22 1.5E-26 210.5 9.7 162 368-541 17-193 (353)
82 PRK13637 cbiO cobalt transport 99.9 1.1E-21 2.3E-26 203.2 10.8 159 369-541 21-203 (287)
83 cd03256 ABC_PhnC_transporter A 99.9 1.1E-21 2.3E-26 196.9 10.4 182 369-572 15-224 (241)
84 cd03262 ABC_HisP_GlnQ_permease 99.9 9.6E-22 2.1E-26 193.6 9.9 160 369-541 14-193 (213)
85 PRK11153 metN DL-methionine tr 99.9 9.4E-22 2E-26 208.7 10.5 162 368-541 18-199 (343)
86 cd03266 ABC_NatA_sodium_export 99.9 9.3E-22 2E-26 194.6 9.7 160 369-541 19-194 (218)
87 PRK13646 cbiO cobalt transport 99.9 1.2E-21 2.7E-26 202.6 11.0 161 369-541 21-204 (286)
88 cd03219 ABC_Mj1267_LivG_branch 99.9 1.3E-21 2.9E-26 195.8 10.8 181 369-572 14-222 (236)
89 PRK09536 btuD corrinoid ABC tr 99.9 1.1E-21 2.4E-26 211.9 10.8 161 368-541 16-197 (402)
90 TIGR03522 GldA_ABC_ATP gliding 99.9 3.4E-22 7.4E-27 208.3 6.5 160 368-541 15-190 (301)
91 PRK13634 cbiO cobalt transport 99.9 1.3E-21 2.8E-26 202.9 10.7 161 369-541 21-204 (290)
92 cd03263 ABC_subfamily_A The AB 99.9 1.3E-21 2.9E-26 193.8 10.2 180 369-572 16-211 (220)
93 PRK11000 maltose/maltodextrin 99.9 1.2E-21 2.5E-26 210.0 10.5 161 369-541 17-192 (369)
94 TIGR01189 ccmA heme ABC export 99.9 1.4E-21 3E-26 191.1 10.0 159 369-541 14-185 (198)
95 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.5E-21 3.3E-26 195.9 10.5 161 369-541 15-191 (236)
96 PRK13635 cbiO cobalt transport 99.9 1.3E-21 2.9E-26 201.8 10.3 162 369-542 21-200 (279)
97 PRK09452 potA putrescine/sperm 99.9 1.5E-21 3.2E-26 209.5 10.9 161 369-541 28-203 (375)
98 PRK13650 cbiO cobalt transport 99.9 1.6E-21 3.5E-26 201.0 10.9 159 369-541 21-199 (279)
99 PRK11248 tauB taurine transpor 99.9 1.1E-21 2.4E-26 199.8 9.5 161 369-541 15-187 (255)
100 cd03258 ABC_MetN_methionine_tr 99.9 1.7E-21 3.6E-26 194.9 10.4 161 369-541 19-199 (233)
101 cd03218 ABC_YhbG The ABC trans 99.9 2E-21 4.3E-26 194.1 10.8 181 369-572 14-212 (232)
102 TIGR03410 urea_trans_UrtE urea 99.9 1.7E-21 3.6E-26 194.5 10.2 183 369-573 14-212 (230)
103 PRK10908 cell division protein 99.9 2.1E-21 4.5E-26 193.0 10.9 160 369-541 16-195 (222)
104 PRK13641 cbiO cobalt transport 99.9 1.8E-21 3.9E-26 201.5 10.8 160 369-541 21-203 (287)
105 cd03231 ABC_CcmA_heme_exporter 99.9 2.2E-21 4.7E-26 190.4 10.7 158 369-542 14-184 (201)
106 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.9E-21 4.2E-26 199.4 10.8 162 368-541 37-219 (269)
107 PRK11247 ssuB aliphatic sulfon 99.9 1.8E-21 3.8E-26 198.8 10.4 161 369-541 26-192 (257)
108 COG4559 ABC-type hemin transpo 99.9 3.9E-21 8.4E-26 187.7 12.2 158 369-529 15-191 (259)
109 PRK13638 cbiO cobalt transport 99.9 1.5E-21 3.4E-26 200.1 9.9 158 369-541 15-194 (271)
110 PRK13538 cytochrome c biogenes 99.8 9.6E-22 2.1E-26 193.3 7.9 160 369-541 15-187 (204)
111 cd03224 ABC_TM1139_LivF_branch 99.8 2.2E-21 4.8E-26 192.3 10.0 181 369-572 14-211 (222)
112 PRK10070 glycine betaine trans 99.8 2.4E-21 5.3E-26 209.2 11.1 162 368-541 41-223 (400)
113 cd03298 ABC_ThiQ_thiamine_tran 99.8 2.7E-21 5.8E-26 190.6 10.5 157 373-541 16-187 (211)
114 cd03257 ABC_NikE_OppD_transpor 99.8 2.6E-21 5.7E-26 192.3 10.2 161 369-541 19-204 (228)
115 PRK11308 dppF dipeptide transp 99.8 4.1E-21 8.9E-26 202.6 12.2 162 368-541 28-213 (327)
116 TIGR03258 PhnT 2-aminoethylpho 99.8 1.7E-21 3.7E-26 208.1 9.3 162 369-541 19-197 (362)
117 cd03260 ABC_PstB_phosphate_tra 99.8 3.8E-21 8.2E-26 191.6 11.2 180 369-572 14-219 (227)
118 COG4586 ABC-type uncharacteriz 99.8 2.7E-21 5.9E-26 194.7 10.1 200 353-574 21-238 (325)
119 COG4598 HisP ABC-type histidin 99.8 5.4E-21 1.2E-25 182.4 11.6 182 367-571 18-230 (256)
120 TIGR01184 ntrCD nitrate transp 99.8 2.5E-21 5.4E-26 194.0 9.7 159 371-541 1-173 (230)
121 PRK11831 putative ABC transpor 99.8 2.5E-21 5.4E-26 198.5 9.8 161 369-541 21-202 (269)
122 PRK13636 cbiO cobalt transport 99.8 3E-21 6.5E-26 199.4 10.4 161 369-541 20-200 (283)
123 PRK13651 cobalt transporter AT 99.8 3.1E-21 6.7E-26 201.7 10.5 160 369-541 21-223 (305)
124 PRK15079 oligopeptide ABC tran 99.8 4.3E-21 9.3E-26 202.8 11.4 162 368-541 34-220 (331)
125 PRK11022 dppD dipeptide transp 99.8 5.5E-21 1.2E-25 201.6 12.2 162 368-541 20-212 (326)
126 PRK13643 cbiO cobalt transport 99.8 4.3E-21 9.3E-26 198.8 10.8 158 369-541 20-202 (288)
127 cd03295 ABC_OpuCA_Osmoprotecti 99.8 4.4E-21 9.6E-26 193.2 10.5 161 369-541 15-194 (242)
128 cd03267 ABC_NatA_like Similar 99.8 5.6E-21 1.2E-25 192.1 11.1 162 368-541 34-212 (236)
129 PRK11264 putative amino-acid A 99.8 4.6E-21 9.9E-26 193.7 10.5 160 369-541 17-202 (250)
130 cd03214 ABC_Iron-Siderophores_ 99.8 6E-21 1.3E-25 184.2 10.7 134 369-541 13-156 (180)
131 TIGR01277 thiQ thiamine ABC tr 99.8 5.2E-21 1.1E-25 189.1 10.5 160 370-541 13-187 (213)
132 COG4181 Predicted ABC-type tra 99.8 7.3E-21 1.6E-25 180.4 10.9 187 365-574 20-227 (228)
133 PRK13652 cbiO cobalt transport 99.8 4.9E-21 1.1E-25 197.2 10.6 159 369-541 18-196 (277)
134 PRK11124 artP arginine transpo 99.8 3.9E-21 8.5E-26 193.4 9.7 160 369-541 16-199 (242)
135 PRK13543 cytochrome c biogenes 99.8 6.5E-21 1.4E-25 188.8 11.1 160 369-541 25-195 (214)
136 PRK13539 cytochrome c biogenes 99.8 5.1E-21 1.1E-25 188.7 10.3 159 369-541 16-185 (207)
137 TIGR03415 ABC_choXWV_ATP choli 99.8 9.4E-21 2E-25 203.5 13.1 184 367-572 36-244 (382)
138 PRK14250 phosphate ABC transpo 99.8 7.1E-21 1.5E-25 191.9 11.5 158 369-541 17-190 (241)
139 PRK13644 cbiO cobalt transport 99.8 4.9E-21 1.1E-25 197.0 10.5 160 369-541 16-194 (274)
140 PRK10895 lipopolysaccharide AB 99.8 4.9E-21 1.1E-25 192.6 10.2 160 369-541 17-195 (241)
141 PRK13645 cbiO cobalt transport 99.8 4.6E-21 1E-25 198.4 10.3 161 369-541 25-209 (289)
142 PRK15112 antimicrobial peptide 99.8 4E-21 8.8E-26 196.7 9.6 161 369-541 27-208 (267)
143 PRK13633 cobalt transporter AT 99.8 5.5E-21 1.2E-25 197.1 10.6 161 369-541 24-203 (280)
144 COG4604 CeuD ABC-type enteroch 99.8 4.7E-21 1E-25 185.3 9.3 183 368-572 14-215 (252)
145 PRK09493 glnQ glutamine ABC tr 99.8 4.6E-21 1E-25 192.7 9.7 160 369-541 15-194 (240)
146 PRK13649 cbiO cobalt transport 99.8 5.1E-21 1.1E-25 197.0 10.1 160 369-541 21-203 (280)
147 TIGR03005 ectoine_ehuA ectoine 99.8 3.7E-21 7.9E-26 194.9 8.8 161 369-541 14-205 (252)
148 PRK15056 manganese/iron transp 99.8 6.9E-21 1.5E-25 195.5 10.9 160 369-541 21-200 (272)
149 PRK09544 znuC high-affinity zi 99.8 5.5E-21 1.2E-25 194.4 10.0 159 369-541 18-179 (251)
150 PRK13632 cbiO cobalt transport 99.8 6E-21 1.3E-25 195.8 10.3 161 369-541 23-201 (271)
151 TIGR02769 nickel_nikE nickel i 99.8 7.3E-21 1.6E-25 194.5 10.8 162 368-541 24-209 (265)
152 PRK11607 potG putrescine trans 99.8 6.8E-21 1.5E-25 204.5 10.9 161 369-541 33-208 (377)
153 PRK13631 cbiO cobalt transport 99.8 7.5E-21 1.6E-25 200.1 11.0 160 369-541 40-234 (320)
154 COG3840 ThiQ ABC-type thiamine 99.8 9.6E-21 2.1E-25 181.1 10.5 177 374-572 18-209 (231)
155 PRK11300 livG leucine/isoleuci 99.8 6.1E-21 1.3E-25 193.3 9.6 182 369-572 19-233 (255)
156 PRK10575 iron-hydroxamate tran 99.8 5.1E-21 1.1E-25 195.6 9.1 161 369-541 25-206 (265)
157 TIGR00972 3a0107s01c2 phosphat 99.8 6.9E-21 1.5E-25 192.4 9.8 180 369-572 15-222 (247)
158 PRK13639 cbiO cobalt transport 99.8 8.2E-21 1.8E-25 195.3 10.6 160 369-541 16-195 (275)
159 cd03264 ABC_drug_resistance_li 99.8 7.1E-21 1.5E-25 187.6 9.5 158 369-541 14-187 (211)
160 PRK10247 putative ABC transpor 99.8 1.4E-20 3E-25 187.8 11.7 160 369-541 21-196 (225)
161 TIGR03411 urea_trans_UrtD urea 99.8 9.2E-21 2E-25 190.6 10.3 159 369-541 16-200 (242)
162 COG0444 DppD ABC-type dipeptid 99.8 1.7E-20 3.7E-25 193.8 12.3 165 365-541 15-212 (316)
163 PRK13540 cytochrome c biogenes 99.8 1.3E-20 2.9E-25 184.6 10.8 158 369-541 15-185 (200)
164 PRK11231 fecE iron-dicitrate t 99.8 7.7E-21 1.7E-25 193.0 9.4 160 369-541 16-196 (255)
165 PRK15093 antimicrobial peptide 99.8 1.1E-20 2.3E-25 199.6 10.9 162 368-541 20-217 (330)
166 TIGR03740 galliderm_ABC gallid 99.8 9.2E-21 2E-25 188.5 9.8 159 369-541 14-182 (223)
167 PRK13548 hmuV hemin importer A 99.8 1.2E-20 2.5E-25 192.4 10.7 166 369-541 16-199 (258)
168 TIGR02770 nickel_nikD nickel i 99.8 8.9E-21 1.9E-25 189.7 9.5 160 370-541 1-184 (230)
169 TIGR02982 heterocyst_DevA ABC 99.8 1.1E-20 2.5E-25 187.6 10.0 162 368-541 18-200 (220)
170 PRK10253 iron-enterobactin tra 99.8 8.7E-21 1.9E-25 193.9 9.4 161 369-541 21-202 (265)
171 PRK09700 D-allose transporter 99.8 3.8E-20 8.1E-25 205.8 15.2 181 370-573 278-489 (510)
172 PRK10619 histidine/lysine/argi 99.8 1.1E-20 2.4E-25 192.1 9.9 160 369-541 19-210 (257)
173 PRK11144 modC molybdate transp 99.8 1.1E-20 2.4E-25 201.2 10.3 157 373-541 16-187 (352)
174 PRK09473 oppD oligopeptide tra 99.8 1.2E-20 2.5E-25 199.4 10.4 162 368-541 29-220 (330)
175 PRK11701 phnK phosphonate C-P 99.8 1.1E-20 2.3E-25 192.3 9.6 161 369-541 20-210 (258)
176 PRK10771 thiQ thiamine transpo 99.8 1.5E-20 3.2E-25 188.3 10.5 158 372-541 16-188 (232)
177 PRK13642 cbiO cobalt transport 99.8 1.4E-20 3.1E-25 193.8 10.6 161 369-541 21-199 (277)
178 PRK11288 araG L-arabinose tran 99.8 4.1E-20 8.8E-25 205.2 15.0 193 369-584 267-489 (501)
179 PRK15439 autoinducer 2 ABC tra 99.8 1.5E-20 3.2E-25 209.3 11.5 159 369-541 25-198 (510)
180 TIGR02324 CP_lyasePhnL phospho 99.8 2E-20 4.3E-25 186.0 11.2 162 368-542 21-208 (224)
181 TIGR02142 modC_ABC molybdenum 99.8 1.3E-20 2.9E-25 200.7 10.6 157 373-541 15-190 (354)
182 PRK14259 phosphate ABC transpo 99.8 2.7E-20 5.8E-25 191.0 12.4 159 369-541 27-211 (269)
183 PRK13640 cbiO cobalt transport 99.8 1.4E-20 3.1E-25 194.3 10.5 159 369-541 21-202 (282)
184 PRK13549 xylose transporter AT 99.8 4.9E-20 1.1E-24 204.8 15.3 161 368-541 275-463 (506)
185 cd03297 ABC_ModC_molybdenum_tr 99.8 9.1E-21 2E-25 187.3 8.5 156 373-541 16-190 (214)
186 COG4161 ArtP ABC-type arginine 99.8 1.3E-19 2.7E-24 170.5 15.5 197 368-587 15-240 (242)
187 cd03245 ABCC_bacteriocin_expor 99.8 1.2E-20 2.6E-25 186.9 9.2 154 369-541 18-197 (220)
188 PRK13549 xylose transporter AT 99.8 5.9E-20 1.3E-24 204.2 15.7 160 369-541 19-201 (506)
189 PRK11614 livF leucine/isoleuci 99.8 1.4E-20 3.1E-25 188.8 9.5 159 369-541 19-195 (237)
190 PRK10762 D-ribose transporter 99.8 1.6E-20 3.4E-25 208.5 10.8 160 369-541 18-199 (501)
191 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1.9E-20 4.1E-25 187.0 10.3 158 368-541 35-200 (224)
192 PRK13648 cbiO cobalt transport 99.8 2.3E-20 4.9E-25 191.3 11.1 161 369-541 23-201 (269)
193 cd03300 ABC_PotA_N PotA is an 99.8 2.3E-20 5E-25 187.0 10.9 161 369-541 14-189 (232)
194 PRK09700 D-allose transporter 99.8 1.9E-20 4E-25 208.3 11.0 160 369-541 19-203 (510)
195 PRK03695 vitamin B12-transport 99.8 2.4E-20 5.2E-25 189.0 10.9 163 370-541 11-191 (248)
196 PRK14247 phosphate ABC transpo 99.8 2.3E-20 5E-25 188.7 10.4 159 369-541 17-203 (250)
197 PRK14242 phosphate transporter 99.8 2.5E-20 5.5E-25 188.7 10.6 159 369-541 20-206 (253)
198 TIGR01978 sufC FeS assembly AT 99.8 2.4E-20 5.1E-25 187.4 10.1 160 369-541 14-202 (243)
199 PRK09984 phosphonate/organopho 99.8 2.1E-20 4.6E-25 190.6 9.6 161 369-541 18-211 (262)
200 PRK10418 nikD nickel transport 99.8 3.2E-20 6.9E-25 188.5 10.7 161 369-541 17-199 (254)
201 cd03299 ABC_ModC_like Archeal 99.8 3.2E-20 7E-25 186.4 10.3 160 370-541 14-188 (235)
202 TIGR02633 xylG D-xylose ABC tr 99.8 9.4E-20 2E-24 202.1 15.0 195 369-586 274-498 (500)
203 PRK10762 D-ribose transporter 99.8 9.8E-20 2.1E-24 202.2 15.0 159 370-541 267-453 (501)
204 PRK14267 phosphate ABC transpo 99.8 2.9E-20 6.2E-25 188.3 9.8 159 369-541 18-206 (253)
205 cd03254 ABCC_Glucan_exporter_l 99.8 2.7E-20 5.8E-25 185.6 9.3 156 369-541 17-196 (229)
206 COG4525 TauB ABC-type taurine 99.8 4.4E-20 9.6E-25 178.3 10.4 162 368-541 18-191 (259)
207 TIGR03873 F420-0_ABC_ATP propo 99.8 3.3E-20 7.1E-25 188.5 10.0 181 369-572 15-216 (256)
208 cd03234 ABCG_White The White s 99.8 5.6E-20 1.2E-24 183.3 11.3 162 368-542 20-202 (226)
209 PRK10261 glutathione transport 99.8 2.2E-20 4.7E-25 212.7 9.3 162 368-541 337-522 (623)
210 TIGR02323 CP_lyasePhnK phospho 99.8 3.7E-20 8.1E-25 187.5 10.0 161 369-541 17-207 (253)
211 PRK10982 galactose/methyl gala 99.8 4.1E-20 8.9E-25 204.6 11.2 160 369-541 12-192 (491)
212 PRK14241 phosphate transporter 99.8 3.9E-20 8.6E-25 188.1 10.2 159 369-541 18-205 (258)
213 cd03252 ABCC_Hemolysin The ABC 99.8 4.4E-20 9.5E-25 185.1 10.3 176 368-573 15-216 (237)
214 PRK14235 phosphate transporter 99.8 6.2E-20 1.3E-24 188.0 11.3 159 369-541 33-220 (267)
215 PRK13541 cytochrome c biogenes 99.8 5.6E-20 1.2E-24 179.5 10.3 155 372-541 17-181 (195)
216 cd03250 ABCC_MRP_domain1 Domai 99.8 7.6E-20 1.7E-24 179.5 11.3 152 369-542 19-187 (204)
217 PRK11288 araG L-arabinose tran 99.8 5.5E-20 1.2E-24 204.2 11.4 160 369-541 18-198 (501)
218 PRK13547 hmuV hemin importer A 99.8 6.2E-20 1.4E-24 188.9 10.9 166 369-541 15-213 (272)
219 COG4619 ABC-type uncharacteriz 99.8 8.4E-20 1.8E-24 172.7 10.8 162 368-542 16-193 (223)
220 TIGR00968 3a0106s01 sulfate AB 99.8 6.7E-20 1.5E-24 184.3 10.9 161 369-541 14-189 (237)
221 cd03216 ABC_Carb_Monos_I This 99.8 6.2E-20 1.3E-24 174.8 10.0 127 369-541 14-140 (163)
222 PRK14243 phosphate transporter 99.8 9.7E-20 2.1E-24 186.2 12.2 159 369-541 24-208 (264)
223 cd03246 ABCC_Protease_Secretio 99.8 7.3E-20 1.6E-24 175.5 10.4 139 369-541 16-154 (173)
224 PRK14254 phosphate ABC transpo 99.8 5.9E-20 1.3E-24 190.2 10.4 159 369-541 53-237 (285)
225 TIGR03269 met_CoM_red_A2 methy 99.8 9.8E-20 2.1E-24 203.0 12.8 194 369-587 298-519 (520)
226 cd03230 ABC_DR_subfamily_A Thi 99.8 5E-20 1.1E-24 176.7 9.0 132 369-541 14-153 (173)
227 PRK10938 putative molybdenum t 99.8 7.8E-20 1.7E-24 202.2 11.9 160 369-541 17-193 (490)
228 PRK09580 sufC cysteine desulfu 99.8 6.4E-20 1.4E-24 185.0 10.3 160 369-541 15-203 (248)
229 cd03244 ABCC_MRP_domain2 Domai 99.8 5.8E-20 1.3E-24 182.1 9.7 155 369-541 18-196 (221)
230 PRK10261 glutathione transport 99.8 4.1E-20 8.8E-25 210.4 9.8 162 368-541 29-227 (623)
231 cd03237 ABC_RNaseL_inhibitor_d 99.8 5.7E-20 1.2E-24 186.5 9.8 156 370-541 9-174 (246)
232 TIGR03771 anch_rpt_ABC anchore 99.8 9.4E-20 2E-24 181.8 11.2 153 376-541 1-171 (223)
233 PRK14273 phosphate ABC transpo 99.8 6.4E-20 1.4E-24 186.0 10.0 159 369-541 21-207 (254)
234 PRK10744 pstB phosphate transp 99.8 6.9E-20 1.5E-24 186.7 10.2 180 369-572 27-234 (260)
235 cd03229 ABC_Class3 This class 99.8 5.8E-20 1.3E-24 177.0 9.0 146 369-541 14-159 (178)
236 COG1129 MglA ABC-type sugar tr 99.8 1.7E-19 3.6E-24 197.1 13.5 197 368-588 21-243 (500)
237 PRK15439 autoinducer 2 ABC tra 99.8 1E-19 2.2E-24 202.5 12.2 159 370-541 278-461 (510)
238 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 9E-20 1.9E-24 183.0 10.6 174 369-572 17-216 (238)
239 PRK10982 galactose/methyl gala 99.8 2.6E-19 5.6E-24 198.3 15.1 160 369-541 262-449 (491)
240 TIGR02633 xylG D-xylose ABC tr 99.8 8.4E-20 1.8E-24 202.5 11.2 160 369-541 15-199 (500)
241 COG1123 ATPase components of v 99.8 1.1E-19 2.5E-24 199.6 12.0 186 366-573 20-235 (539)
242 cd03215 ABC_Carb_Monos_II This 99.8 7.3E-20 1.6E-24 177.0 9.2 147 370-541 15-162 (182)
243 PRK15134 microcin C ABC transp 99.8 7.1E-20 1.5E-24 204.5 10.4 162 368-541 22-215 (529)
244 PRK10419 nikE nickel transport 99.8 8.9E-20 1.9E-24 187.0 10.2 162 368-541 25-210 (268)
245 PRK14256 phosphate ABC transpo 99.8 1.2E-19 2.6E-24 183.8 11.1 159 369-541 18-205 (252)
246 cd03290 ABCC_SUR1_N The SUR do 99.8 1.4E-19 3E-24 179.5 11.2 156 368-541 14-200 (218)
247 TIGR02868 CydC thiol reductant 99.8 9.2E-20 2E-24 203.3 11.0 154 369-541 349-527 (529)
248 PRK14265 phosphate ABC transpo 99.8 1.4E-19 3E-24 186.2 11.4 159 369-541 34-218 (274)
249 PRK14245 phosphate ABC transpo 99.8 1.7E-19 3.7E-24 182.6 11.7 159 369-541 17-203 (250)
250 cd03253 ABCC_ATM1_transporter 99.8 6.1E-20 1.3E-24 183.8 8.4 176 369-572 15-214 (236)
251 PRK14269 phosphate ABC transpo 99.8 1.4E-19 2.9E-24 183.0 11.0 180 369-572 16-220 (246)
252 cd03251 ABCC_MsbA MsbA is an e 99.8 1.4E-19 3E-24 181.0 10.9 175 369-572 16-215 (234)
253 cd03248 ABCC_TAP TAP, the Tran 99.8 1.9E-19 4.1E-24 179.2 11.5 157 369-541 28-207 (226)
254 PRK14268 phosphate ABC transpo 99.8 1.4E-19 3E-24 184.2 10.7 159 369-541 26-211 (258)
255 PRK14248 phosphate ABC transpo 99.8 1.2E-19 2.5E-24 185.8 10.2 159 369-541 35-221 (268)
256 PRK14251 phosphate ABC transpo 99.8 1.7E-19 3.6E-24 182.6 11.2 159 369-541 18-204 (251)
257 PRK15134 microcin C ABC transp 99.8 7.2E-20 1.6E-24 204.5 9.2 182 368-572 299-505 (529)
258 TIGR03269 met_CoM_red_A2 methy 99.8 9.9E-20 2.1E-24 202.9 10.3 161 369-541 14-227 (520)
259 PRK14263 phosphate ABC transpo 99.8 1.8E-19 3.9E-24 184.2 11.1 159 369-541 22-206 (261)
260 COG1123 ATPase components of v 99.8 2.7E-19 5.8E-24 196.7 13.1 186 366-573 302-510 (539)
261 cd03233 ABC_PDR_domain1 The pl 99.8 2E-19 4.4E-24 176.9 11.0 148 367-541 19-177 (202)
262 cd03369 ABCC_NFT1 Domain 2 of 99.8 2.2E-19 4.9E-24 176.5 11.2 149 369-541 22-182 (207)
263 cd03228 ABCC_MRP_Like The MRP 99.8 1.5E-19 3.2E-24 173.1 9.4 138 369-541 16-153 (171)
264 COG4608 AppF ABC-type oligopep 99.8 4.6E-19 1E-23 179.7 13.3 142 367-541 25-168 (268)
265 PRK14272 phosphate ABC transpo 99.8 1.7E-19 3.8E-24 182.4 10.2 180 369-572 18-226 (252)
266 PRK14270 phosphate ABC transpo 99.8 2.3E-19 5E-24 181.7 11.0 157 369-541 18-204 (251)
267 PRK14240 phosphate transporter 99.8 2E-19 4.4E-24 181.8 10.5 159 369-541 17-203 (250)
268 cd03223 ABCD_peroxisomal_ALDP 99.8 2.4E-19 5.3E-24 171.2 10.4 132 369-541 15-146 (166)
269 PRK14249 phosphate ABC transpo 99.8 3.4E-19 7.3E-24 180.5 11.8 180 369-572 18-225 (251)
270 PRK14274 phosphate ABC transpo 99.8 2.7E-19 5.9E-24 182.1 11.0 157 369-541 26-212 (259)
271 CHL00131 ycf16 sulfate ABC tra 99.8 2.1E-19 4.5E-24 181.8 10.0 160 369-541 21-209 (252)
272 PRK14262 phosphate ABC transpo 99.8 3E-19 6.5E-24 180.6 11.1 159 369-541 17-203 (250)
273 PRK14260 phosphate ABC transpo 99.8 2.5E-19 5.4E-24 182.5 10.5 159 369-541 21-207 (259)
274 PRK14275 phosphate ABC transpo 99.8 2.7E-19 5.9E-24 185.3 10.6 159 369-541 53-239 (286)
275 PRK14253 phosphate ABC transpo 99.8 3.6E-19 7.9E-24 179.9 10.9 159 369-541 17-202 (249)
276 PRK14237 phosphate transporter 99.8 4.6E-19 1E-23 181.5 11.8 159 369-541 34-220 (267)
277 PRK13545 tagH teichoic acids e 99.8 2.7E-19 5.8E-24 197.3 10.6 159 369-541 38-201 (549)
278 PRK14244 phosphate ABC transpo 99.8 2.9E-19 6.3E-24 180.9 10.1 159 369-541 19-206 (251)
279 PRK14258 phosphate ABC transpo 99.8 3.4E-19 7.5E-24 181.8 10.6 161 369-541 21-209 (261)
280 cd03247 ABCC_cytochrome_bd The 99.8 2.6E-19 5.7E-24 172.3 9.0 140 369-541 16-155 (178)
281 PRK10938 putative molybdenum t 99.8 2.5E-19 5.4E-24 198.2 10.1 161 369-541 274-460 (490)
282 PRK14239 phosphate transporter 99.8 3.9E-19 8.4E-24 179.9 10.4 159 369-541 19-205 (252)
283 PRK14238 phosphate transporter 99.8 3.1E-19 6.6E-24 183.3 9.6 159 369-541 38-224 (271)
284 COG4133 CcmA ABC-type transpor 99.8 6.9E-19 1.5E-23 169.3 11.1 153 368-529 15-180 (209)
285 PRK14236 phosphate transporter 99.8 4.6E-19 1E-23 182.0 10.7 159 369-541 39-225 (272)
286 PRK11174 cysteine/glutathione 99.8 4.3E-19 9.2E-24 200.4 11.3 153 369-541 364-542 (588)
287 PRK13546 teichoic acids export 99.8 4.7E-19 1E-23 181.7 10.5 160 368-541 37-201 (264)
288 COG3845 ABC-type uncharacteriz 99.8 1.3E-18 2.9E-23 187.2 14.4 198 367-588 16-238 (501)
289 cd03217 ABC_FeS_Assembly ABC-t 99.8 4.6E-19 1E-23 174.0 9.7 137 369-541 14-162 (200)
290 cd03222 ABC_RNaseL_inhibitor T 99.8 5.2E-19 1.1E-23 171.3 9.8 117 369-541 14-130 (177)
291 cd03288 ABCC_SUR2 The SUR doma 99.8 4.6E-19 9.9E-24 180.5 9.8 177 369-572 35-233 (257)
292 PRK14255 phosphate ABC transpo 99.8 6.7E-19 1.4E-23 178.3 10.9 180 369-572 19-226 (252)
293 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 5.7E-19 1.2E-23 165.0 9.4 112 369-541 14-125 (144)
294 cd03232 ABC_PDR_domain2 The pl 99.8 9.6E-19 2.1E-23 170.7 11.3 139 369-541 21-166 (192)
295 cd03213 ABCG_EPDR ABCG transpo 99.8 4.4E-19 9.5E-24 173.4 8.9 140 368-541 22-169 (194)
296 PRK15177 Vi polysaccharide exp 99.8 5.6E-19 1.2E-23 175.3 9.8 176 370-572 2-182 (213)
297 PRK14271 phosphate ABC transpo 99.8 6.6E-19 1.4E-23 181.5 10.5 159 369-541 35-220 (276)
298 PRK13409 putative ATPase RIL; 99.8 4.2E-19 9.2E-24 200.7 9.8 154 370-541 354-512 (590)
299 PRK14264 phosphate ABC transpo 99.8 7.5E-19 1.6E-23 183.6 10.9 159 369-541 59-257 (305)
300 cd03238 ABC_UvrA The excision 99.8 1.8E-18 3.9E-23 167.3 12.6 134 366-541 6-147 (176)
301 PRK14257 phosphate ABC transpo 99.8 8.9E-19 1.9E-23 185.1 11.3 159 369-541 96-282 (329)
302 COG1119 ModF ABC-type molybden 99.8 1.8E-18 3.9E-23 172.7 12.6 166 368-544 44-234 (257)
303 PRK14261 phosphate ABC transpo 99.8 8.5E-19 1.8E-23 177.8 10.5 159 369-541 20-206 (253)
304 cd03289 ABCC_CFTR2 The CFTR su 99.8 6.2E-19 1.4E-23 181.9 9.4 152 369-541 18-195 (275)
305 PRK14246 phosphate ABC transpo 99.8 1.1E-18 2.4E-23 178.0 11.1 159 369-541 24-210 (257)
306 PRK14266 phosphate ABC transpo 99.8 1E-18 2.2E-23 176.7 10.7 159 369-541 17-203 (250)
307 PRK14252 phosphate ABC transpo 99.8 1.2E-18 2.6E-23 178.1 11.1 159 369-541 30-218 (265)
308 COG2274 SunT ABC-type bacterio 99.8 9.6E-19 2.1E-23 200.2 11.5 160 369-545 487-670 (709)
309 TIGR01257 rim_protein retinal- 99.8 1.5E-19 3.2E-24 223.9 5.0 160 369-541 1953-2128(2272)
310 PRK11176 lipid transporter ATP 99.8 1.1E-18 2.4E-23 196.7 11.1 175 369-572 357-557 (582)
311 PRK15064 ABC transporter ATP-b 99.8 8.3E-19 1.8E-23 196.0 10.0 155 369-541 15-210 (530)
312 cd03236 ABC_RNaseL_inhibitor_d 99.8 1.5E-18 3.2E-23 177.2 10.5 159 369-541 15-197 (255)
313 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.7E-18 3.8E-23 179.2 11.2 170 369-572 51-237 (282)
314 KOG0058 Peptide exporter, ABC 99.8 1.6E-18 3.4E-23 193.7 11.4 157 368-541 481-661 (716)
315 KOG0055 Multidrug/pheromone ex 99.8 1.7E-18 3.7E-23 202.8 12.2 177 364-573 361-567 (1228)
316 TIGR02857 CydD thiol reductant 99.8 1.3E-18 2.9E-23 194.0 10.8 154 369-541 336-515 (529)
317 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1.4E-18 3.1E-23 200.4 11.2 172 369-572 493-690 (710)
318 PRK15064 ABC transporter ATP-b 99.8 1E-18 2.3E-23 195.2 9.7 174 369-572 333-514 (530)
319 PRK11819 putative ABC transpor 99.8 1.1E-18 2.4E-23 196.3 9.8 156 368-541 20-218 (556)
320 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.8E-18 3.8E-23 199.0 11.6 151 369-541 467-643 (686)
321 PF00005 ABC_tran: ABC transpo 99.8 6.9E-19 1.5E-23 161.1 6.4 123 371-507 1-137 (137)
322 PRK10636 putative ABC transpor 99.8 1E-18 2.3E-23 199.4 9.3 155 369-541 15-204 (638)
323 PLN03211 ABC transporter G-25; 99.8 2.2E-18 4.8E-23 197.2 11.7 160 369-541 82-264 (659)
324 TIGR03375 type_I_sec_LssB type 99.8 2.7E-18 5.8E-23 197.7 12.0 187 369-588 479-691 (694)
325 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2.3E-18 5E-23 193.5 11.0 154 369-541 336-498 (552)
326 TIGR01257 rim_protein retinal- 99.8 2.4E-18 5.3E-23 213.2 12.0 159 369-541 944-1118(2272)
327 PRK10790 putative multidrug tr 99.8 2.3E-18 5E-23 194.7 10.9 153 369-541 355-533 (592)
328 PRK11819 putative ABC transpor 99.8 2.6E-18 5.7E-23 193.2 11.2 154 369-541 338-500 (556)
329 PRK11160 cysteine/glutathione 99.8 2.6E-18 5.6E-23 193.9 11.1 155 369-542 354-533 (574)
330 TIGR01194 cyc_pep_trnsptr cycl 99.7 5.6E-18 1.2E-22 190.5 13.6 181 370-576 357-553 (555)
331 TIGR01187 potA spermidine/putr 99.7 2.2E-18 4.8E-23 181.7 9.2 144 388-541 1-159 (325)
332 PRK13657 cyclic beta-1,2-gluca 99.7 2.9E-18 6.2E-23 193.8 10.8 154 369-541 349-528 (588)
333 TIGR02203 MsbA_lipidA lipid A 99.7 4.3E-18 9.3E-23 191.3 12.0 157 369-543 346-528 (571)
334 PRK10522 multidrug transporter 99.7 6.4E-18 1.4E-22 189.6 12.7 178 369-573 337-529 (547)
335 PRK10636 putative ABC transpor 99.7 2.6E-18 5.6E-23 196.2 9.6 155 369-541 326-485 (638)
336 TIGR01193 bacteriocin_ABC ABC- 99.7 4.1E-18 8.9E-23 196.6 11.0 154 369-541 488-667 (708)
337 COG4107 PhnK ABC-type phosphon 99.7 9.1E-18 2E-22 159.7 11.1 205 358-588 12-256 (258)
338 TIGR00958 3a01208 Conjugate Tr 99.7 4.1E-18 8.9E-23 196.8 10.6 152 369-541 495-672 (711)
339 PRK11147 ABC transporter ATPas 99.7 4.3E-18 9.4E-23 194.3 10.5 153 369-541 333-495 (635)
340 KOG0057 Mitochondrial Fe/S clu 99.7 9.9E-18 2.2E-22 182.1 12.6 160 369-545 366-549 (591)
341 PRK10789 putative multidrug tr 99.7 4.5E-18 9.8E-23 191.7 10.1 155 369-542 329-509 (569)
342 TIGR01846 type_I_sec_HlyB type 99.7 7E-18 1.5E-22 194.3 11.7 154 369-541 471-650 (694)
343 TIGR01842 type_I_sec_PrtD type 99.7 7.6E-18 1.6E-22 188.8 11.7 157 369-541 332-512 (544)
344 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 5.6E-18 1.2E-22 190.4 10.5 155 369-541 19-216 (552)
345 PRK13409 putative ATPase RIL; 99.7 4.3E-18 9.4E-23 192.5 9.6 158 369-541 88-269 (590)
346 TIGR02204 MsbA_rel ABC transpo 99.7 8.7E-18 1.9E-22 189.1 11.6 155 370-543 355-535 (576)
347 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.1E-17 2.3E-22 157.7 10.1 126 369-541 13-138 (157)
348 COG4136 ABC-type uncharacteriz 99.7 1.7E-17 3.7E-22 154.6 10.5 164 369-546 16-197 (213)
349 COG1134 TagH ABC-type polysacc 99.7 2.6E-17 5.7E-22 164.4 12.4 183 367-572 39-226 (249)
350 TIGR00955 3a01204 The Eye Pigm 99.7 1.4E-17 3E-22 189.6 11.7 161 368-541 38-224 (617)
351 COG1132 MdlB ABC-type multidru 99.7 1E-17 2.3E-22 188.5 10.2 172 369-571 343-541 (567)
352 COG4988 CydD ABC-type transpor 99.7 1.2E-17 2.7E-22 183.3 10.5 177 369-573 335-534 (559)
353 PRK10535 macrolide transporter 99.7 1E-17 2.2E-22 191.6 10.3 162 368-542 21-203 (648)
354 PRK11147 ABC transporter ATPas 99.7 1.1E-17 2.4E-22 191.0 10.5 156 369-541 17-211 (635)
355 TIGR01192 chvA glucan exporter 99.7 8.8E-18 1.9E-22 190.0 9.6 156 369-541 349-528 (585)
356 PLN03073 ABC transporter F fam 99.7 1.2E-17 2.6E-22 192.5 10.1 174 370-571 524-702 (718)
357 COG4148 ModC ABC-type molybdat 99.7 1.6E-17 3.4E-22 168.1 9.2 160 373-545 16-192 (352)
358 COG4172 ABC-type uncharacteriz 99.7 4.2E-17 9.2E-22 171.7 12.4 189 363-573 18-238 (534)
359 COG4167 SapF ABC-type antimicr 99.7 6.1E-17 1.3E-21 155.2 11.2 184 366-572 24-229 (267)
360 TIGR00954 3a01203 Peroxysomal 99.7 3.4E-17 7.3E-22 187.7 10.3 155 369-541 466-637 (659)
361 PTZ00265 multidrug resistance 99.7 4.5E-17 9.8E-22 200.0 11.9 156 369-541 1182-1417(1466)
362 KOG0055 Multidrug/pheromone ex 99.7 6.7E-17 1.5E-21 189.6 12.2 178 368-573 1003-1204(1228)
363 TIGR00956 3a01205 Pleiotropic 99.7 4.7E-17 1E-21 199.4 11.3 161 368-541 776-960 (1394)
364 KOG0061 Transporter, ABC super 99.7 4.6E-17 1E-21 184.8 10.3 189 368-571 43-257 (613)
365 COG4618 ArpD ABC-type protease 99.7 8.3E-17 1.8E-21 173.6 11.6 161 363-541 344-530 (580)
366 PTZ00265 multidrug resistance 99.7 5.7E-17 1.2E-21 199.2 11.7 161 369-541 399-638 (1466)
367 COG4172 ABC-type uncharacteriz 99.7 2.6E-16 5.7E-21 165.8 13.5 183 368-573 300-507 (534)
368 COG4987 CydC ABC-type transpor 99.7 1.2E-16 2.5E-21 173.7 11.1 180 364-573 347-552 (573)
369 COG1101 PhnK ABC-type uncharac 99.7 1.1E-16 2.3E-21 157.1 9.8 184 369-574 20-230 (263)
370 KOG0059 Lipid exporter ABCA1 a 99.7 3.5E-17 7.7E-22 192.8 7.6 175 370-553 580-772 (885)
371 COG0396 sufC Cysteine desulfur 99.7 1.5E-16 3.2E-21 157.5 10.5 165 368-545 17-206 (251)
372 TIGR00956 3a01205 Pleiotropic 99.7 1.5E-16 3.2E-21 195.1 12.8 163 367-541 73-268 (1394)
373 PLN03140 ABC transporter G fam 99.7 8.4E-17 1.8E-21 197.2 10.6 161 368-541 893-1077(1470)
374 COG0488 Uup ATPase components 99.7 9.4E-17 2E-21 178.7 9.9 154 369-541 17-208 (530)
375 PLN03232 ABC transporter C fam 99.7 1.2E-16 2.5E-21 197.4 11.5 172 369-572 1250-1448(1495)
376 PLN03130 ABC transporter C fam 99.7 1.4E-16 3.1E-21 197.3 11.8 153 369-541 1253-1431(1622)
377 TIGR00957 MRP_assoc_pro multi 99.7 1.9E-16 4.1E-21 195.9 11.9 173 369-573 1300-1499(1522)
378 COG4778 PhnL ABC-type phosphon 99.7 2.4E-16 5.2E-21 149.6 9.8 153 364-525 20-198 (235)
379 PLN03140 ABC transporter G fam 99.7 2.6E-16 5.7E-21 192.9 11.1 163 367-541 177-395 (1470)
380 PTZ00243 ABC transporter; Prov 99.6 4.6E-16 1E-20 192.4 11.6 152 370-541 1325-1503(1560)
381 cd03270 ABC_UvrA_I The excisio 99.6 8.8E-16 1.9E-20 153.9 11.4 156 364-541 4-197 (226)
382 PLN03073 ABC transporter F fam 99.6 5.3E-16 1.1E-20 179.0 11.0 156 369-541 191-399 (718)
383 COG4674 Uncharacterized ABC-ty 99.6 1.8E-16 4E-21 153.4 5.5 181 368-572 18-225 (249)
384 KOG0056 Heavy metal exporter H 99.6 1.1E-15 2.3E-20 163.8 10.7 148 369-528 552-723 (790)
385 TIGR01271 CFTR_protein cystic 99.6 1.3E-15 2.8E-20 188.1 11.7 152 369-541 1233-1410(1490)
386 TIGR01271 CFTR_protein cystic 99.6 9.7E-16 2.1E-20 189.2 10.5 150 369-541 440-606 (1490)
387 cd03278 ABC_SMC_barmotin Barmo 99.6 9.1E-16 2E-20 150.9 8.1 145 372-541 14-174 (197)
388 COG0488 Uup ATPase components 99.6 1.7E-15 3.6E-20 168.7 9.6 155 369-541 336-494 (530)
389 PLN03130 ABC transporter C fam 99.6 4.3E-15 9.3E-20 184.3 12.7 149 370-541 632-798 (1622)
390 TIGR00957 MRP_assoc_pro multi 99.6 3.4E-15 7.3E-20 184.8 11.2 152 369-541 652-820 (1522)
391 PTZ00243 ABC transporter; Prov 99.6 3.5E-15 7.5E-20 184.7 10.7 150 369-541 674-840 (1560)
392 PLN03232 ABC transporter C fam 99.6 7E-15 1.5E-19 181.8 11.4 151 369-541 631-798 (1495)
393 COG5265 ATM1 ABC-type transpor 99.5 4.1E-14 8.9E-19 150.1 9.5 148 369-527 277-447 (497)
394 COG4138 BtuD ABC-type cobalami 99.5 2E-14 4.3E-19 137.3 6.0 164 371-544 15-192 (248)
395 cd03273 ABC_SMC2_euk Eukaryoti 99.5 3.5E-14 7.7E-19 144.2 7.7 155 383-545 25-231 (251)
396 KOG0065 Pleiotropic drug resis 99.5 9.8E-15 2.1E-19 171.7 3.5 164 366-537 802-988 (1391)
397 KOG0927 Predicted transporter 99.5 1.5E-13 3.3E-18 149.4 10.0 135 370-514 405-545 (614)
398 TIGR03499 FlhF flagellar biosy 99.4 3.6E-13 7.8E-18 139.6 11.2 87 383-475 194-282 (282)
399 cd03271 ABC_UvrA_II The excisi 99.4 1.2E-12 2.6E-17 134.3 11.3 80 454-541 149-230 (261)
400 PRK09435 membrane ATPase/prote 99.4 1E-11 2.2E-16 131.3 18.3 184 339-545 9-207 (332)
401 cd03274 ABC_SMC4_euk Eukaryoti 99.4 2.6E-13 5.6E-18 135.1 5.7 157 368-544 17-191 (212)
402 KOG0062 ATPase component of AB 99.4 6.3E-13 1.4E-17 144.0 8.9 151 370-541 95-253 (582)
403 COG4615 PvdE ABC-type sideroph 99.4 1.7E-12 3.6E-17 137.0 11.0 174 371-565 339-528 (546)
404 cd03272 ABC_SMC3_euk Eukaryoti 99.4 2.7E-12 5.9E-17 129.1 12.0 84 471-573 157-240 (243)
405 KOG0054 Multidrug resistance-a 99.4 1.5E-12 3.2E-17 156.4 11.5 149 370-541 536-701 (1381)
406 KOG0066 eIF2-interacting prote 99.4 1.3E-12 2.9E-17 138.7 9.7 159 385-573 615-780 (807)
407 KOG2355 Predicted ABC-type tra 99.4 1.7E-12 3.8E-17 126.8 9.6 180 369-573 28-228 (291)
408 COG4178 ABC-type uncharacteriz 99.4 1.2E-12 2.6E-17 146.3 9.7 154 369-541 407-572 (604)
409 cd03279 ABC_sbcCD SbcCD and ot 99.4 1.1E-12 2.4E-17 130.2 8.3 156 373-541 19-191 (213)
410 cd03276 ABC_SMC6_euk Eukaryoti 99.3 3E-12 6.5E-17 126.1 9.1 139 372-526 13-160 (198)
411 COG1129 MglA ABC-type sugar tr 99.3 9.4E-12 2E-16 136.7 13.6 195 370-588 274-498 (500)
412 cd03240 ABC_Rad50 The catalyti 99.3 2.3E-12 5.1E-17 127.3 7.5 138 385-541 24-181 (204)
413 cd03275 ABC_SMC1_euk Eukaryoti 99.3 5.7E-12 1.2E-16 127.9 10.0 149 385-541 24-217 (247)
414 KOG0054 Multidrug resistance-a 99.3 7.9E-12 1.7E-16 150.2 12.3 142 369-523 1154-1319(1381)
415 KOG0927 Predicted transporter 99.3 3.1E-12 6.7E-17 139.4 7.7 187 368-572 88-307 (614)
416 COG1703 ArgK Putative periplas 99.3 5.5E-11 1.2E-15 122.2 15.0 184 339-545 4-202 (323)
417 COG1245 Predicted ATPase, RNas 99.3 1.2E-11 2.7E-16 132.5 9.1 172 371-568 352-532 (591)
418 cd03280 ABC_MutS2 MutS2 homolo 99.3 6.2E-12 1.4E-16 123.6 6.2 132 372-544 18-152 (200)
419 cd03283 ABC_MutS-like MutS-lik 99.2 3.2E-11 7E-16 119.0 8.4 35 370-408 16-50 (199)
420 TIGR00750 lao LAO/AO transport 99.2 3E-10 6.6E-15 118.8 14.2 170 353-545 5-185 (300)
421 COG1245 Predicted ATPase, RNas 99.1 5E-11 1.1E-15 127.9 6.6 149 379-544 98-273 (591)
422 COG4170 SapD ABC-type antimicr 99.1 2.5E-10 5.4E-15 112.2 10.7 188 360-573 12-239 (330)
423 COG3845 ABC-type uncharacteriz 99.1 6.5E-10 1.4E-14 120.7 13.7 193 368-584 271-496 (501)
424 cd03239 ABC_SMC_head The struc 99.1 4.1E-10 8.9E-15 109.2 10.1 129 385-542 24-157 (178)
425 PRK00635 excinuclease ABC subu 99.1 3.3E-10 7.1E-15 139.8 11.7 77 457-541 792-870 (1809)
426 COG2401 ABC-type ATPase fused 99.1 2.4E-10 5.2E-15 121.5 8.4 177 369-571 397-587 (593)
427 KOG0060 Long-chain acyl-CoA tr 99.1 4.1E-10 9E-15 123.8 10.3 163 362-541 442-625 (659)
428 cd03243 ABC_MutS_homologs The 99.1 1.7E-10 3.7E-15 113.5 6.7 129 376-545 24-153 (202)
429 cd03277 ABC_SMC5_euk Eukaryoti 99.0 7.1E-10 1.5E-14 110.5 8.9 91 469-572 123-213 (213)
430 cd03227 ABC_Class2 ABC-type Cl 99.0 1.5E-09 3.3E-14 103.3 10.4 121 384-544 22-142 (162)
431 cd03282 ABC_MSH4_euk MutS4 hom 99.0 6E-10 1.3E-14 110.5 7.2 135 369-545 17-153 (204)
432 PRK00349 uvrA excinuclease ABC 99.0 1E-09 2.2E-14 129.8 10.4 60 471-541 829-891 (943)
433 TIGR00630 uvra excinuclease AB 99.0 3.3E-09 7.2E-14 125.3 13.4 64 470-541 825-889 (924)
434 KOG0066 eIF2-interacting prote 99.0 1.2E-09 2.7E-14 116.5 8.7 157 369-541 278-467 (807)
435 KOG0062 ATPase component of AB 98.9 2.2E-09 4.8E-14 116.9 9.6 141 385-541 392-537 (582)
436 cd03114 ArgK-like The function 98.9 6.4E-09 1.4E-13 98.0 11.3 138 385-543 1-148 (148)
437 PF03308 ArgK: ArgK protein; 98.9 4.2E-09 9.1E-14 107.1 9.1 144 380-544 26-179 (266)
438 smart00534 MUTSac ATPase domai 98.9 1.6E-09 3.6E-14 105.3 5.3 122 385-545 1-124 (185)
439 KOG0065 Pleiotropic drug resis 98.9 5.5E-09 1.2E-13 124.1 10.5 189 367-568 127-345 (1391)
440 KOG0064 Peroxisomal long-chain 98.9 4.5E-09 9.8E-14 114.6 7.9 188 362-580 490-694 (728)
441 cd03285 ABC_MSH2_euk MutS2 hom 98.8 2.8E-09 6E-14 107.0 5.2 133 370-545 19-155 (222)
442 cd03281 ABC_MSH5_euk MutS5 hom 98.8 1.5E-08 3.2E-13 101.2 9.4 126 380-544 26-155 (213)
443 smart00053 DYNc Dynamin, GTPas 98.8 2.7E-08 5.8E-13 101.1 11.3 160 385-558 28-217 (240)
444 PTZ00132 GTP-binding nuclear p 98.8 1.6E-08 3.5E-13 99.9 9.1 44 477-527 157-205 (215)
445 cd03287 ABC_MSH3_euk MutS3 hom 98.7 7.1E-08 1.5E-12 97.0 10.9 136 369-545 19-156 (222)
446 cd03241 ABC_RecN RecN ATPase i 98.7 4E-08 8.6E-13 101.6 9.1 61 473-541 171-231 (276)
447 cd03284 ABC_MutS1 MutS1 homolo 98.7 9.6E-08 2.1E-12 95.5 11.1 35 370-407 20-54 (216)
448 TIGR01069 mutS2 MutS2 family p 98.7 2E-08 4.3E-13 117.2 6.3 131 374-545 314-447 (771)
449 TIGR00101 ureG urease accessor 98.6 2.5E-07 5.4E-12 91.4 11.1 168 383-575 1-187 (199)
450 TIGR00073 hypB hydrogenase acc 98.6 2.1E-06 4.5E-11 84.9 16.2 162 380-568 19-189 (207)
451 PRK00635 excinuclease ABC subu 98.5 6.8E-07 1.5E-11 111.1 13.1 94 470-572 1696-1794(1809)
452 KOG0063 RNAse L inhibitor, ABC 98.5 2.1E-07 4.6E-12 99.7 7.5 169 371-570 352-535 (592)
453 COG0178 UvrA Excinuclease ATPa 98.5 8.3E-07 1.8E-11 101.5 11.8 95 471-574 820-919 (935)
454 PRK13768 GTPase; Provisional 98.4 2.1E-06 4.6E-11 87.9 12.4 161 383-546 2-176 (253)
455 cd01124 KaiC KaiC is a circadi 98.4 2E-06 4.3E-11 82.5 11.2 136 385-544 1-141 (187)
456 TIGR02858 spore_III_AA stage I 98.4 1.4E-06 3E-11 90.2 9.5 39 384-422 112-150 (270)
457 cd01120 RecA-like_NTPases RecA 98.4 1.6E-06 3.5E-11 79.9 9.1 38 385-422 1-38 (165)
458 PF07015 VirC1: VirC1 protein; 98.4 4.9E-06 1.1E-10 83.8 13.0 134 390-544 9-152 (231)
459 cd00820 PEPCK_HprK Phosphoenol 98.3 4.2E-07 9.1E-12 81.3 4.2 46 369-422 3-48 (107)
460 PRK00409 recombination and DNA 98.3 7.2E-07 1.6E-11 104.6 6.1 122 384-545 328-452 (782)
461 TIGR03238 dnd_assoc_3 dnd syst 98.3 4.3E-07 9.2E-12 99.8 3.8 51 369-423 20-71 (504)
462 TIGR00554 panK_bact pantothena 98.3 3.7E-06 8.1E-11 87.8 10.6 83 327-423 17-104 (290)
463 PF02463 SMC_N: RecF/RecN/SMC 98.3 5.1E-06 1.1E-10 82.3 11.1 64 472-543 136-199 (220)
464 cd03286 ABC_MSH6_euk MutS6 hom 98.2 4.8E-06 1E-10 83.6 9.7 134 370-544 19-154 (218)
465 PRK10463 hydrogenase nickel in 98.2 2.2E-05 4.8E-10 81.8 14.2 164 384-574 105-279 (290)
466 PF00009 GTP_EFTU: Elongation 98.2 6.2E-06 1.4E-10 79.9 9.5 140 385-554 5-144 (188)
467 cd03242 ABC_RecF RecF is a rec 98.2 5.4E-06 1.2E-10 85.5 9.4 50 471-522 181-235 (270)
468 smart00382 AAA ATPases associa 98.2 1.1E-05 2.4E-10 71.1 10.0 38 385-422 4-41 (148)
469 cd03112 CobW_like The function 98.2 1.6E-05 3.4E-10 75.7 11.7 145 385-544 2-158 (158)
470 PRK08533 flagellar accessory p 98.2 1.6E-05 3.4E-10 80.3 12.3 136 378-543 21-163 (230)
471 cd02023 UMPK Uridine monophosp 98.1 6.1E-06 1.3E-10 80.7 7.0 110 385-511 1-113 (198)
472 PF03029 ATP_bind_1: Conserved 98.1 1.6E-05 3.5E-10 80.8 10.1 34 388-421 1-34 (238)
473 cd01130 VirB11-like_ATPase Typ 98.1 4.2E-06 9.2E-11 81.4 5.3 42 376-419 20-61 (186)
474 PHA02518 ParA-like protein; Pr 98.1 0.00012 2.6E-09 71.6 15.4 162 385-564 2-165 (211)
475 PRK06793 fliI flagellum-specif 98.0 1.4E-05 3.1E-10 87.5 9.2 147 368-551 144-294 (432)
476 COG3910 Predicted ATPase [Gene 98.0 3.9E-05 8.5E-10 75.0 11.0 41 495-541 146-186 (233)
477 cd00881 GTP_translation_factor 98.0 8.9E-05 1.9E-09 70.2 13.5 127 386-546 2-128 (189)
478 cd01888 eIF2_gamma eIF2-gamma 98.0 2.8E-05 6.1E-10 76.6 9.9 23 385-407 2-24 (203)
479 PRK09270 nucleoside triphospha 98.0 7.9E-06 1.7E-10 82.1 4.9 44 380-423 30-74 (229)
480 cd04165 GTPBP1_like GTPBP1-lik 97.9 2.4E-05 5.1E-10 78.8 7.8 142 386-545 2-151 (224)
481 cd01881 Obg_like The Obg-like 97.9 0.00013 2.9E-09 68.3 12.3 19 388-406 1-19 (176)
482 PRK13695 putative NTPase; Prov 97.9 2E-05 4.4E-10 75.6 6.7 27 385-411 2-28 (174)
483 PF02492 cobW: CobW/HypB/UreG, 97.9 5.5E-05 1.2E-09 73.2 9.7 150 385-548 2-157 (178)
484 cd04155 Arl3 Arl3 subfamily. 97.9 2.4E-05 5.1E-10 73.7 6.2 24 383-406 14-37 (173)
485 cd01891 TypA_BipA TypA (tyrosi 97.9 0.00024 5.3E-09 69.0 13.5 110 465-588 64-188 (194)
486 cd02033 BchX Chlorophyllide re 97.9 0.00032 6.8E-09 74.7 15.4 168 382-563 30-234 (329)
487 cd00880 Era_like Era (E. coli 97.9 0.00012 2.5E-09 66.0 10.3 69 465-546 44-118 (163)
488 PRK09866 hypothetical protein; 97.8 0.00049 1.1E-08 78.3 17.0 72 466-545 230-302 (741)
489 cd04163 Era Era subfamily. Er 97.8 0.00029 6.2E-09 64.5 12.7 22 384-405 4-25 (168)
490 PF02421 FeoB_N: Ferrous iron 97.8 3.3E-05 7.1E-10 73.8 6.5 142 385-576 2-153 (156)
491 PRK07721 fliI flagellum-specif 97.8 8.2E-05 1.8E-09 82.0 10.3 51 368-421 146-196 (438)
492 PRK15494 era GTPase Era; Provi 97.8 0.00024 5.2E-09 75.9 13.6 132 370-546 34-174 (339)
493 cd01122 GP4d_helicase GP4d_hel 97.8 0.00016 3.5E-09 74.0 11.8 164 368-544 17-192 (271)
494 COG1159 Era GTPase [General fu 97.8 0.00024 5.2E-09 73.8 13.0 121 384-549 7-131 (298)
495 cd04171 SelB SelB subfamily. 97.8 0.00015 3.3E-09 67.0 10.6 21 385-405 2-22 (164)
496 PRK06067 flagellar accessory p 97.8 0.00032 7E-09 70.5 13.7 41 378-420 22-62 (234)
497 COG0378 HypB Ni2+-binding GTPa 97.8 0.00012 2.5E-09 72.0 9.9 169 381-575 10-192 (202)
498 cd04170 EF-G_bact Elongation f 97.8 0.00024 5.1E-09 73.0 12.7 145 386-564 2-149 (268)
499 cd04160 Arfrp1 Arfrp1 subfamil 97.8 6.8E-05 1.5E-09 70.1 7.9 23 386-408 2-24 (167)
500 PRK15467 ethanolamine utilizat 97.8 0.00021 4.6E-09 67.6 11.3 133 385-576 3-139 (158)
No 1
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-104 Score=835.95 Aligned_cols=537 Identities=49% Similarity=0.785 Sum_probs=414.0
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHhhhhccccCCCceeecCCCCceeeEEEEecccceEEEEEeccccc
Q 007789 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (589)
Q Consensus 1 Mld~~~i~t~gG~vLW~~~~~~~~~~~~~in~li~~v~leer~~~~~~~~~~~~~~~~lkw~~~ne~~lvfv~vyq~~l~ 80 (589)
|||+|.||||||+||||++.....+++ |||+||++||+|||++..+|.++ .|||||+++|+++||||+|||+|++
T Consensus 1 Mld~faIFtkgG~vLw~~~~~~~~~~~-~in~lI~~~ll~er~~~~~~~~~----~yTlk~q~~N~~~lvfvvvfqki~~ 75 (587)
T KOG0781|consen 1 MLDQFAIFTKGGLVLWCYQEVGDNLKG-PINALIRSVLLSERGGVNSFTFE----AYTLKYQLDNQYSLVFVVVFQKILT 75 (587)
T ss_pred CcceeeeecCCcEEEEEecccchhccc-hHHHHHHHHHHHhhcCcccCchh----heeEeeeecCCccEEEEEEEeccch
Confidence 999999999999999998877766777 99999999999999999999999 9999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcC--CCccchHHHHHHHHHHHHHHHHH---hhhcccccCCCCcccccCCCCcCCCCccC
Q 007789 81 LLYVDDLLAMMKQSFSEIYDPKR--TDYSDFDEMFRQLRKEAEARAEE---LKKSKQVTKPMNNLKKQGGQLQKGGFERG 155 (589)
Q Consensus 81 l~yvd~ll~~v~~~F~~~y~~~~--~~~~~f~~~f~~~l~~~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (589)
|.|+|+||++++..|+..|.+.. ..+-+|.+.|..+|+........ ..+.+.... .++..+|......... +
T Consensus 76 L~yv~~ll~~v~~~f~e~~~~~~~~~l~~n~~~~~~e~lk~rq~~ne~t~~k~~~pi~~~--~~~~~~K~~~~v~~~~-e 152 (587)
T KOG0781|consen 76 LTYVDKLLNDVLNLFREKYDTQSALSLLNNTFDFQEELLKLRQVANEATEYKIRAPITMK--KSEDLEKAKDPVRSPI-E 152 (587)
T ss_pred hhhHHHHHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHHhhcccccchhhhcccchhh--hhhcchhhhhhhcccc-c
Confidence 99999999999999999998643 34445566666666654432111 111111111 1222222211000000 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccccccccccCCCCCCCCCCccccchHHHHHhhccCCCCcccccCCC
Q 007789 156 SNRSGGGSANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKG 235 (589)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (589)
.. .+..+++.. +..+++. .+...+ ..++++-+..++++ ...+
T Consensus 153 ~~-------~d~s~kk~~------nt~kng~----------------~~~~h~------~~~kk~~~~tkkKg---~~s~ 194 (587)
T KOG0781|consen 153 TN-------GDKSAKKKK------NTKKNGA----------------KKEGHD------EEFKKKHRETKKKG---NKST 194 (587)
T ss_pred cc-------cccchhccc------ccccCCC----------------cccchh------hhhhhhhccccccc---ccCC
Confidence 00 000000000 0111111 000000 11222211111110 0112
Q ss_pred CCCCCCCccccCCccCCCCC--CCCCCccCCCCCCCCC----cchhhhhhcCCCCC-CcccccCCCCcchhhhhhcCCCC
Q 007789 236 SNPDPKKKITKKNRVWDDSP--PESKLDFTDPAGGNGS----NIEVEAADHGESMM-DKEEVFSSDSESEEDEEVGKHNK 308 (589)
Q Consensus 236 ~~~~~~~k~~k~~r~w~~~~--~~~~ld~s~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 308 (589)
+...|++|.+|++|+||+.+ +.+.||||++..+++. .++......+.+.. +++-+.+++++ .++++. .+..
T Consensus 195 ~~~~p~kKGkk~~RvWdd~g~~d~~~ld~sss~sn~e~a~~e~vn~~~~~s~~~~~~~l~~~~~d~~~-s~~~~~-~~~~ 272 (587)
T KOG0781|consen 195 KVDAPKKKGKKAPRVWDDAGCEDEKVLDYSSSTSNGENALSETVNLDQGESMGGQLQDLDKDSSDDEG-SADNST-DPAA 272 (587)
T ss_pred CCCCchhhcccccchhhhccchhhcccccCCccccccchhHHHhhhhhhccccccccccccccccccc-cccccc-chhh
Confidence 23345566777799999876 5788999998876532 23322222232222 12221111111 111111 1122
Q ss_pred CCCcccchHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH--------------------------------HHHH
Q 007789 309 PDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA--------------------------------AMEE 356 (589)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~--------------------------------al~~ 356 (589)
..+..+|+| ++|++++|++.|+++||.|+|++|++|||.+||| +|++
T Consensus 273 ~~k~~g~aF-g~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~d 351 (587)
T KOG0781|consen 273 TKKTVGGAF-GLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRD 351 (587)
T ss_pred hhcchhhHH-HHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 344556777 6999999999999999999999999999999999 8999
Q ss_pred HHHHhcCcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhc
Q 007789 357 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARR 436 (589)
Q Consensus 357 ~l~~il~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~ 436 (589)
+|++||+|++++|+|++|.-....++||+|+|||+|||||||+|+|||+||..++.+|+|++|||||.||||||++|.++
T Consensus 352 aLvQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~r 431 (587)
T KOG0781|consen 352 ALVQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVER 431 (587)
T ss_pred HHHHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred c------ccceeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 437 L------QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 437 l------~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
+ .|++|+.+|++|++.+|++||+++...++|++||||+||||.+.+||++|.++++++.||+||+|.|+++|.|
T Consensus 432 l~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~d 511 (587)
T KOG0781|consen 432 LSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGND 511 (587)
T ss_pred HHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcH
Confidence 9 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++|+..||++|.+.. .++.||+|++||+|++|+++|++++|+|.++.||+|+|+||+|.||+.++++++|+.||+
T Consensus 512 sv~q~~~fn~al~~~~---~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~lm~ 587 (587)
T KOG0781|consen 512 SVDQLKKFNRALADHS---TPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATLMK 587 (587)
T ss_pred HHHHHHHHHHHHhcCC---CccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHhhC
Confidence 9999999999997665 678999999999999999999999999999999999999999999999999999999986
No 2
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.1e-50 Score=413.50 Aligned_cols=251 Identities=40% Similarity=0.625 Sum_probs=217.7
Q ss_pred CcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHH-hcCcccc--------------ccccccc------ccccccC
Q 007789 328 ANLDKADLEPALKALKDRLMTKNVA-----AMEEALVR-ILTPRRS--------------IDILRDV------HAAKEQR 381 (589)
Q Consensus 328 ~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~-il~p~~~--------------i~iL~~I------s~~i~~G 381 (589)
..+.+.+.++++++|.+.|+++||+ .+.+.|.+ ....... .++|..+ ......+
T Consensus 58 ~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~ 137 (340)
T COG0552 58 KKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKIKDEETVKEALREALIEILRPVDKVDLPLEIPKEK 137 (340)
T ss_pred cccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHhcccccccchhhhccCC
Confidence 4456678888999999999999998 22233332 1111100 1222211 1112256
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHh
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
+|++|+|||+||+||||+++|||.||+.++.+|++++|||||+||++||..|++++++++....++.||+.+++++++++
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999988669999999999999999
Q ss_pred cccCCCccccccCccccccHHHHHHHHhhhhhcCCCE------EEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 007789 462 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL------VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 535 (589)
Q Consensus 462 ~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~Pdl------ILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it 535 (589)
...++|++++|||||+|.+.+||.+|.++.++++|+. +|+|.|+|+|+|++.|++.|++++ ++|
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav----------~l~ 287 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV----------GLD 287 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc----------CCc
Confidence 9999999999999999999999999999999976655 888779999999999999999887 899
Q ss_pred EEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 536 GILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 536 ~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
|+|+||+|.+ +++|++++|.+.+++||.|||.||.|+||++|++++||+.||.
T Consensus 288 GiIlTKlDgt-AKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 288 GIILTKLDGT-AKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred eEEEEecccC-CCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 9999999986 9999999999999999999999999999999999999999984
No 3
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.2e-49 Score=414.25 Aligned_cols=264 Identities=36% Similarity=0.612 Sum_probs=237.2
Q ss_pred chHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH--------------HHHHHHHHhcCccccc---------ccc
Q 007789 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA--------------AMEEALVRILTPRRSI---------DIL 371 (589)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~--------------al~~~l~~il~p~~~i---------~iL 371 (589)
..|++.++++.|...|||++++++++++|.+|+++||+ ++++.+.+.++|++.+ .+|
T Consensus 7 ~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~ll 86 (451)
T COG0541 7 DRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLL 86 (451)
T ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 44788999999999999999999999999999999999 2222222233333321 222
Q ss_pred c--ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCC
Q 007789 372 R--DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 449 (589)
Q Consensus 372 ~--~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d 449 (589)
. +..+.+....|.+|++||..|+||||+++|||.||+..+.+|++++||+||+||++||+++++.+++++|..+.+.+
T Consensus 87 G~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~ 166 (451)
T COG0541 87 GGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKD 166 (451)
T ss_pred CCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCC
Confidence 2 22333446678999999999999999999999999999999999999999999999999999999999999878889
Q ss_pred HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
|.++++++++++...++|++++|||||.+.+..||.+|..+..+.+|+.+|||-++++|+|++++++.|++.+
T Consensus 167 Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l------- 239 (451)
T COG0541 167 PVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL------- 239 (451)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 530 NPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 530 ~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++|+|+||+|+ |+++|++||+++.||.||.|+|+||+++||++|+|++++++||.
T Consensus 240 ---~itGvIlTKlDG-daRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG 295 (451)
T COG0541 240 ---GITGVILTKLDG-DARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG 295 (451)
T ss_pred ---CCceEEEEcccC-CCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcC
Confidence 999999999999 59999999999999999999999999999999999999999984
No 4
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-43 Score=363.41 Aligned_cols=258 Identities=31% Similarity=0.557 Sum_probs=238.0
Q ss_pred cchHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH--------------------------------HHHHHHHHh
Q 007789 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA--------------------------------AMEEALVRI 361 (589)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~--------------------------------al~~~l~~i 361 (589)
++.+.+.|+.+.....+++..|+..|++|+.+|++.||. ++..+|.+.
T Consensus 7 GrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl 86 (483)
T KOG0780|consen 7 GRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKL 86 (483)
T ss_pred chhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHH
Confidence 466888999999999999999999999999999999998 333444455
Q ss_pred cCcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccce
Q 007789 362 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 441 (589)
Q Consensus 362 l~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l 441 (589)
+.|... .|....++|.+|+|||.+|+||||++.|+|++|+..+.++.+++.||||+||.+||+..+...++|+
T Consensus 87 ~dp~~~-------~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ 159 (483)
T KOG0780|consen 87 LDPGKS-------ALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPF 159 (483)
T ss_pred hCCCCc-------ccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCee
Confidence 544322 2345578899999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHH
Q 007789 442 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 521 (589)
Q Consensus 442 ~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 521 (589)
|......||..++.+.++.++.+++|++++|||||.+|...|+.+|..+.+..+|+.+|||-++..|+.+.+|++.|++.
T Consensus 160 ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 160 YGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred EecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 522 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 522 l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+ +++++|+||+|.. +++|.++|.+..|+.||.||||||+++||++|+|+.||++||.
T Consensus 240 v----------dvg~vIlTKlDGh-akGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLG 296 (483)
T KOG0780|consen 240 V----------DVGAVILTKLDGH-AKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLG 296 (483)
T ss_pred h----------ccceEEEEecccC-CCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhc
Confidence 6 8999999999996 9999999999999999999999999999999999999999984
No 5
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=1.7e-42 Score=373.11 Aligned_cols=264 Identities=27% Similarity=0.506 Sum_probs=228.2
Q ss_pred chHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHHh---------cCccccc---------ccc
Q 007789 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVRI---------LTPRRSI---------DIL 371 (589)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~i---------l~p~~~i---------~iL 371 (589)
..|.+.|+++.|.+.||++++++++++++.+|+++||+ .+.+.+.+- ++|...+ .+|
T Consensus 7 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l 86 (429)
T TIGR01425 7 SSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLV 86 (429)
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHh
Confidence 44789999999999999999999999999999999999 111122111 1121111 122
Q ss_pred ccc--ccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCC
Q 007789 372 RDV--HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 449 (589)
Q Consensus 372 ~~I--s~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d 449 (589)
... .+....+.|++|+|||++||||||++++||.++...+.+|.+.++|+||+|+++|++++++.+++|++......+
T Consensus 87 ~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~d 166 (429)
T TIGR01425 87 DPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESD 166 (429)
T ss_pred CCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCC
Confidence 111 123335668899999999999999999999999888889999999999999999999999999999987666778
Q ss_pred HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
|..++.++++++...++|+++|||+||.+.+..+|.+|.++....+|+.++||.+++.|+++.++++.|++.+
T Consensus 167 p~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~------- 239 (429)
T TIGR01425 167 PVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSV------- 239 (429)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhcc-------
Confidence 8899999999887778999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 530 NPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 530 ~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|++ +++|+++|+.+.+++||.|+|+||+++||+.|+|++++++||+
T Consensus 240 ---~~~g~IlTKlD~~-argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilg 295 (429)
T TIGR01425 240 ---DVGSVIITKLDGH-AKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLG 295 (429)
T ss_pred ---CCcEEEEECccCC-CCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhc
Confidence 8999999999996 8999999999999999999999999999999999999999984
No 6
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=2.8e-41 Score=355.35 Aligned_cols=262 Identities=45% Similarity=0.715 Sum_probs=222.0
Q ss_pred cccchHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHHhcC---------cccc---------c
Q 007789 312 KKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVRILT---------PRRS---------I 368 (589)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~il~---------p~~~---------i 368 (589)
...|||..+... .|+++++++.+++++..|+++||+ .+-+.+.+-+. +... .
T Consensus 45 ~~~~~~~~~~~~-----~~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 119 (336)
T PRK14974 45 EKPGFFDKAKIT-----EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALL 119 (336)
T ss_pred cccCHHHHHHhc-----ccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHH
Confidence 456888766432 399999999999999999999998 11111211110 0000 0
Q ss_pred ccccccc-cc----c-ccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhcccccee
Q 007789 369 DILRDVH-AA----K-EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 442 (589)
Q Consensus 369 ~iL~~Is-~~----i-~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~ 442 (589)
++|.... +. + ..++|++|+|+|+|||||||++++||.++...+.+|.+.++|+||+|+++|++.++++++++++
T Consensus 120 ~~l~~~~~~~~~~~~~~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~ 199 (336)
T PRK14974 120 EVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVI 199 (336)
T ss_pred HHhCCCcchhhhhhhhccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCcee
Confidence 1121111 11 1 2456889999999999999999999999998888999999999999999999999999999998
Q ss_pred ccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHH
Q 007789 443 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 522 (589)
Q Consensus 443 ~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l 522 (589)
...++.++..++.++++++...++|+++|||+|+++.+..+|.+|.++.++.+|+.++||.+++.|.|...+++.|++.+
T Consensus 200 ~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~ 279 (336)
T PRK14974 200 KHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV 279 (336)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC
Confidence 87888899998999999888888999999999999999999999999999999999999999999999999998886654
Q ss_pred HHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 523 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 523 ~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|++ .++|+++++.+.+++||.|+|+||+|+||+.|+|++|+++||+
T Consensus 280 ----------~~~giIlTKlD~~-~~~G~~ls~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~v~~llg 335 (336)
T PRK14974 280 ----------GIDGVILTKVDAD-AKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335 (336)
T ss_pred ----------CCCEEEEeeecCC-CCccHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 8999999999997 8999999999999999999999999999999999999999984
No 7
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=350.12 Aligned_cols=263 Identities=37% Similarity=0.609 Sum_probs=226.2
Q ss_pred hHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHH---------hcCccccc---------cccc
Q 007789 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVR---------ILTPRRSI---------DILR 372 (589)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~---------il~p~~~i---------~iL~ 372 (589)
.|++.|+++.|...|+++++++.+++++.+|+++||+ .+.+.+.+ .++|...+ .+|.
T Consensus 8 ~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~ 87 (433)
T PRK10867 8 RLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILG 87 (433)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhC
Confidence 4778999999999999999999999999999999999 11111211 11222211 1221
Q ss_pred c--cccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-CcEEEEcccccCccchhhhhHhhhhccccceeccCCCCC
Q 007789 373 D--VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 449 (589)
Q Consensus 373 ~--Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d 449 (589)
. ..+....+.|.+|+|+|++||||||++.+||.++... +.+|++.++|+||+++++|++++++..+++++......+
T Consensus 88 ~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~d 167 (433)
T PRK10867 88 GENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQD 167 (433)
T ss_pred CCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCC
Confidence 1 1122335668899999999999999999999998887 789999999999999999999999999999987666778
Q ss_pred HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
+..++.++++.+...++|+++|||+||.+.+..+|.+|..+.....|+.++||.++++|.|++++++.|++.+
T Consensus 168 p~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~------- 240 (433)
T PRK10867 168 PVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEAL------- 240 (433)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhC-------
Confidence 9999998998887788999999999999999999999999999999999999999999999999998886543
Q ss_pred CCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 530 NPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 530 ~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|++ .++|+++++.+.+++||.|+|+||+++||++|+|++++++||+
T Consensus 241 ---~i~giIlTKlD~~-~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilg 296 (433)
T PRK10867 241 ---GLTGVILTKLDGD-ARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG 296 (433)
T ss_pred ---CCCEEEEeCccCc-ccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhC
Confidence 8899999999996 8999999999999999999999999999999999999999984
No 8
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=3.5e-38 Score=342.03 Aligned_cols=261 Identities=31% Similarity=0.539 Sum_probs=220.3
Q ss_pred hHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHHh---------cCcccc-c--------cccc
Q 007789 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVRI---------LTPRRS-I--------DILR 372 (589)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~i---------l~p~~~-i--------~iL~ 372 (589)
.|++.|+++.|++.||++++++++++++.+|+++||+ .+.+.+.+. ++|... + .+|.
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~ 83 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLG 83 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhC
Confidence 3678999999999999999999999999999999999 222222211 112111 1 1222
Q ss_pred cccccc-ccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHH
Q 007789 373 DVHAAK-EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPA 451 (589)
Q Consensus 373 ~Is~~i-~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~ 451 (589)
...... ..+.|.+|+|+|++|+||||++++||.++...+.+|.++++|+||+++.+|++.+++.+++|++......++.
T Consensus 84 ~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~ 163 (437)
T PRK00771 84 EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAV 163 (437)
T ss_pred CCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHH
Confidence 111000 1246889999999999999999999999988888999999999999999999999999999988665567788
Q ss_pred HHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007789 452 IVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 531 (589)
Q Consensus 452 ~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~ 531 (589)
.++.++++++.. +++++|||+|+.+.+..+|.+|..+.....|+.++||.+++.|.|++++++.|++.+
T Consensus 164 ~i~~~al~~~~~--~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l--------- 232 (437)
T PRK00771 164 EIAKEGLEKFKK--ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAV--------- 232 (437)
T ss_pred HHHHHHHHHhhc--CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcC---------
Confidence 888888887643 599999999999999999999999988889999999999999999998888776544
Q ss_pred CCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 532 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 532 ~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|++ .++|+++|+++.+++||.|+|+||+|+||++|+|++++++||+
T Consensus 233 -~i~gvIlTKlD~~-a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg 288 (437)
T PRK00771 233 -GIGGIIITKLDGT-AKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG 288 (437)
T ss_pred -CCCEEEEecccCC-CcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC
Confidence 7899999999996 8999999999999999999999999999999999999999984
No 9
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=8.6e-38 Score=338.17 Aligned_cols=265 Identities=33% Similarity=0.608 Sum_probs=225.9
Q ss_pred cchHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHH-h--------cCcccc---------ccc
Q 007789 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVR-I--------LTPRRS---------IDI 370 (589)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~-i--------l~p~~~---------i~i 370 (589)
+..|+++|+++.|.+.||++++++.+++++.+|+++||+ .+.+.+.+ . ++|... +.+
T Consensus 5 ~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~ 84 (428)
T TIGR00959 5 SERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAI 84 (428)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999 22222221 1 122111 122
Q ss_pred cccc--ccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-hCCcEEEEcccccCccchhhhhHhhhhccccceeccCCC
Q 007789 371 LRDV--HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 447 (589)
Q Consensus 371 L~~I--s~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~ 447 (589)
|... .+....++|++++|+|++|+||||++.+||.++. ..+.+|.+.+||+||+++++|+..+++.+++|++.....
T Consensus 85 l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~ 164 (428)
T TIGR00959 85 LGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKG 164 (428)
T ss_pred hCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCC
Confidence 2221 1233356789999999999999999999999876 467899999999999999999999999999998876666
Q ss_pred CCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~ 527 (589)
.+|..++.++++.+...++|++++||+|+.+.+..+|.+|.++....+|+.++||.++++|.|...+++.|++.+
T Consensus 165 ~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v----- 239 (428)
T TIGR00959 165 QSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERL----- 239 (428)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhC-----
Confidence 788888888888877788999999999999999999999999999999999999999999999999988886444
Q ss_pred CCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 528 SPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 528 ~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|++ .++|+++++.+.++.||.|+|+||+++||++|+|++++++||+
T Consensus 240 -----~i~giIlTKlD~~-~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg 295 (428)
T TIGR00959 240 -----GLTGVVLTKLDGD-ARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILG 295 (428)
T ss_pred -----CCCEEEEeCccCc-ccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhC
Confidence 7899999999996 8999999999999999999999999999999999999999984
No 10
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=2.1e-37 Score=324.54 Aligned_cols=258 Identities=34% Similarity=0.556 Sum_probs=210.1
Q ss_pred HHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHHhcCcc-----cc---------cccccc--cc
Q 007789 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVRILTPR-----RS---------IDILRD--VH 375 (589)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~il~p~-----~~---------i~iL~~--Is 375 (589)
|.+-++++.+++.++++. +++++++|++.||. .+-+.+...+... .. ..+|.. -.
T Consensus 31 ~~~~~~~l~~~~~~~~~~----~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 106 (318)
T PRK10416 31 FGEGINGLFAKKKIDEDL----LEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELAEILEPVEKP 106 (318)
T ss_pred HHHHHHHHhCCCCCCHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCcCCcc
Confidence 344556666677888875 56788899999988 1222222111100 00 011210 01
Q ss_pred cccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHH
Q 007789 376 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455 (589)
Q Consensus 376 ~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~ 455 (589)
+....++|.+++|+|||||||||++++||+++.+.+++|.+.++|+||+++++|+..++++.+++++...++.++...+.
T Consensus 107 ~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~ 186 (318)
T PRK10416 107 LNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAF 186 (318)
T ss_pred ccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHH
Confidence 22223446699999999999999999999999999999999999999999999999999999999887767778888888
Q ss_pred HHHHHhcccCCCccccccCccccccHHHHHHHHhhhhh------cCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 456 ~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~------~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
+++..+...++|+++|||+|+++.+..+|.+|.++.++ ..|+.++||.++++|.+...++..|++.+
T Consensus 187 ~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~------- 259 (318)
T PRK10416 187 DAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAV------- 259 (318)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhC-------
Confidence 88877777889999999999999999999999998875 36889999999999999998887776544
Q ss_pred CCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 530 NPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 530 ~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|++ .++|.++++.+.+++||.|+|+||+++||+.|+|++|+++||+
T Consensus 260 ---~~~giIlTKlD~t-~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~ 315 (318)
T PRK10416 260 ---GLTGIILTKLDGT-AKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315 (318)
T ss_pred ---CCCEEEEECCCCC-CCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhC
Confidence 8999999999998 8999999999999999999999999999999999999999984
No 11
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=7.2e-38 Score=307.29 Aligned_cols=196 Identities=40% Similarity=0.618 Sum_probs=180.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
|++|+||||+||||||+++|||.++...+.+|.+.++|+||+|+++||++|++.+++|++......++.+.+.++++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 78999999999999999999999998888899999999999999999999999999999887777789999999999888
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
..++|+++|||+|+.+.+..++.+|.++.....|+.++||..++.+.+...+...|.+.+ +++++|+||+
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----------~~~~lIlTKl 150 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----------GIDGLILTKL 150 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----------STCEEEEEST
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----------cCceEEEEee
Confidence 888999999999999999999999999999999999999999999998887777775554 8999999999
Q ss_pred cccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 543 DTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 543 D~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
|++ .++|.++++.+.++.||.|+|+||+|+||+.|++++++++||+
T Consensus 151 Det-~~~G~~l~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 151 DET-ARLGALLSLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp TSS-STTHHHHHHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred cCC-CCcccceeHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 997 8999999999999999999999999999999999999999985
No 12
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=100.00 E-value=1.4e-39 Score=335.29 Aligned_cols=115 Identities=52% Similarity=0.826 Sum_probs=71.3
Q ss_pred CChhHHHHHhhhhccccCCCceeecCCCCceeeEEEEecccceEEEEEeccccchhhHHHHHHHHHHHHHHhcCCcC---
Q 007789 27 GSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKR--- 103 (589)
Q Consensus 27 ~~~in~li~~v~leer~~~~~~~~~~~~~~~~lkw~~~ne~~lvfv~vyq~~l~l~yvd~ll~~v~~~F~~~y~~~~--- 103 (589)
++|||+|||+||||||+++++|+|| +|+|||+|+|||+||||||||+||||+|||+||++|+++|+++|++.+
T Consensus 1 ~~~in~LI~~vlleeR~~~~~~~~d----~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~ 76 (279)
T PF04086_consen 1 TSPINALIRDVLLEERSGNSSFTYD----NYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQL 76 (279)
T ss_dssp --HHHHHHHHTGGG-----------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSS
T ss_pred CchHHHHHHHhheeeccCCCceeEc----CEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 4899999999999999999999999 999999999999999999999999999999999999999999998864
Q ss_pred ------CCccchHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCC
Q 007789 104 ------TDYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQL 147 (589)
Q Consensus 104 ------~~~~~f~~~f~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (589)
..|.+||++|+++|+++|+.+...++.+..++ +|++++++++
T Consensus 77 ~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~~~~~~~~--~~~~s~k~~~ 124 (279)
T PF04086_consen 77 KPNTSINEYFDFDEEFDQLLKELEARSKSQKRSPKAMR--SFEESKKSKK 124 (279)
T ss_dssp STHHHHT-----HHHHHHHHHHHCCCTT----------------------
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhccccccccccc--cccccccccc
Confidence 25669999999999999998776444333323 5777777665
No 13
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=1.4e-35 Score=304.70 Aligned_cols=199 Identities=44% Similarity=0.647 Sum_probs=181.9
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHH
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 458 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al 458 (589)
..++|++++|+||+|+||||++++||.++...+.+|.+.++|+||+++++|++.|+++++++++...++.++...+.+++
T Consensus 68 ~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 68 EENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 34567799999999999999999999999888889999999999999999999999999999887677778888877888
Q ss_pred HHhcccCCCccccccCccccccHHHHHHHHhhhhhcC------CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007789 459 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNN------PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 532 (589)
Q Consensus 459 ~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~------PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~ 532 (589)
..+...++|+++|||+|+.+.+..+|.+|.++.+..+ |+.++||.++++|.+...+...|.+.+
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~---------- 217 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV---------- 217 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC----------
Confidence 7777788999999999999999999999999988877 999999999999999888877775443
Q ss_pred CccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhh
Q 007789 533 LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588 (589)
Q Consensus 533 ~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll 588 (589)
+++++|+||+|++ .++|.++++.+.++.||.|+|+||+++||+.|+|++++++||
T Consensus 218 ~~~g~IlTKlDe~-~~~G~~l~~~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 218 GLTGIILTKLDGT-AKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred CCCEEEEEccCCC-CCccHHHHHHHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 7899999999997 899999999999999999999999999999999999999986
No 14
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.7e-32 Score=311.46 Aligned_cols=204 Identities=30% Similarity=0.410 Sum_probs=169.9
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-C-cEEEEcccccCccchhhhhHhhhhccccceeccCCC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-K-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 447 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-~-GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~ 447 (589)
++.++++.+..|+ +|+||||||||||||++|||+++... + .+|.+.++|+||+|+++|++.+++.++++++..
T Consensus 174 il~~~~~~~~~g~--Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~--- 248 (767)
T PRK14723 174 VLRDEDALLAQGG--VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAV--- 248 (767)
T ss_pred hccCCCcccCCCe--EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcccc---
Confidence 4555666665666 99999999999999999999988654 3 389999999999999999999999999998642
Q ss_pred CCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~ 527 (589)
.++.. +.++++.+ .++|+++|||+|+.+.+..++.++..+.....|..++||..+|++.+.. ++++..+..
T Consensus 249 ~~~~~-l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l------~~i~~~f~~ 319 (767)
T PRK14723 249 KDAAD-LRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL------NEVVHAYRH 319 (767)
T ss_pred CCHHH-HHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH------HHHHHHHhh
Confidence 24544 46677654 4789999999999999999999999988888999999999998764433 333333332
Q ss_pred CCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhhC
Q 007789 528 SPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 589 (589)
Q Consensus 528 ~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll~ 589 (589)
. ...+++++|+||+|++ .++|.++++.+.+++||.|+|+||+|| ||+.|+++.|++.||.
T Consensus 320 ~-~~~~i~glIlTKLDEt-~~~G~iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 320 G-AGEDVDGCIITKLDEA-THLGPALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred c-ccCCCCEEEEeccCCC-CCccHHHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhc
Confidence 1 1237999999999998 899999999999999999999999996 9999999999999984
No 15
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=100.00 E-value=5.5e-32 Score=286.40 Aligned_cols=191 Identities=35% Similarity=0.484 Sum_probs=160.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHh--hCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHH
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 457 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~--~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~a 457 (589)
+++ +++||||+||||||||+|||+.+. ....+|.|.+.|+||+||+|||++|++.|++|+.... ++.+. .++
T Consensus 202 ~~~--vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~---~~~el-~~a 275 (407)
T COG1419 202 QKR--VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVY---SPKEL-AEA 275 (407)
T ss_pred cCc--EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEec---CHHHH-HHH
Confidence 466 999999999999999999998666 5678999999999999999999999999999986532 23332 334
Q ss_pred HHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEE
Q 007789 458 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 537 (589)
Q Consensus 458 l~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~I 537 (589)
+.. +.++|+++|||+|+.+++...+.+|..++....+..+.||..+|+-. ..+.+++ +.++..+++++
T Consensus 276 i~~--l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~------~dlkei~----~~f~~~~i~~~ 343 (407)
T COG1419 276 IEA--LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY------EDLKEII----KQFSLFPIDGL 343 (407)
T ss_pred HHH--hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch------HHHHHHH----HHhccCCccee
Confidence 443 45789999999999999999999999999988787788877766532 2222333 33456699999
Q ss_pred EEccccccccchhhhhHhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhhC
Q 007789 538 LLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 589 (589)
Q Consensus 538 IlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll~ 589 (589)
|+||+|++ ..+|.++|+++.+++||+|+++||+|| ||...+++++|+++++
T Consensus 344 I~TKlDET-~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g 395 (407)
T COG1419 344 IFTKLDET-TSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILG 395 (407)
T ss_pred EEEccccc-CchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhc
Confidence 99999998 899999999999999999999999999 9999999999999873
No 16
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.98 E-value=1.3e-31 Score=283.79 Aligned_cols=246 Identities=22% Similarity=0.358 Sum_probs=191.4
Q ss_pred hHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHh---hHH----HHHHHHHHhcCcccccccccccccccccCCceEEEE
Q 007789 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTK---NVA----AMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVF 388 (589)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~---~V~----al~~~l~~il~p~~~i~iL~~Is~~i~~Gep~iI~L 388 (589)
.+..+.+.|... .++++-.+.+++.+...+-.. +-. .+.+.+...+... .. . ..+|.+|+|
T Consensus 179 ~~~~i~~~L~~~-dV~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~---~-~~~~~vI~L 246 (436)
T PRK11889 179 IIQKVIRMLEQN-DVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTE-------NV---F-EKEVQTIAL 246 (436)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHhccc-------cc---c-ccCCcEEEE
Confidence 344555555544 578888888887776543332 111 2223333333211 00 1 223569999
Q ss_pred EecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc-cCCC
Q 007789 389 VGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR-NGSD 467 (589)
Q Consensus 389 VGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l-~~~d 467 (589)
+|||||||||++++||+.+...+.+|.+..+|+||+|+++|++.+++.++++++.. .++..+. +++..+.. .++|
T Consensus 247 VGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~---~d~~~L~-~aL~~lk~~~~~D 322 (436)
T PRK11889 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAMT-RALTYFKEEARVD 322 (436)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEec---CCHHHHH-HHHHHHHhccCCC
Confidence 99999999999999999888778899999999999999999999999999998743 3455543 56666543 4689
Q ss_pred ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC-CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccc
Q 007789 468 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 546 (589)
Q Consensus 468 ~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G-lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d 546 (589)
+++|||+|+.+++..++++|.++++...|+.++||..++++ .|..++.+.|+ ..+++++|+||+|++
T Consensus 323 vVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~-----------~~~idglI~TKLDET- 390 (436)
T PRK11889 323 YILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK-----------DIHIDGIVFTKFDET- 390 (436)
T ss_pred EEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc-----------CCCCCEEEEEcccCC-
Confidence 99999999999999999999999988899988888777655 45565555552 349999999999998
Q ss_pred cchhhhhHhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhhC
Q 007789 547 DKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 589 (589)
Q Consensus 547 ~k~G~als~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll~ 589 (589)
+++|.++++...+++||.|+|+||+|| ||+.++++.+++.||+
T Consensus 391 ~k~G~iLni~~~~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg 434 (436)
T PRK11889 391 ASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ 434 (436)
T ss_pred CCccHHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhc
Confidence 799999999999999999999999998 9999999999999984
No 17
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=6.9e-31 Score=277.64 Aligned_cols=240 Identities=25% Similarity=0.392 Sum_probs=185.2
Q ss_pred cCChhhHHHHHHHHHHHHHHh---hHHHHHHHHHHhcCcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHH
Q 007789 329 NLDKADLEPALKALKDRLMTK---NVAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 329 ~l~~~~l~~~l~~l~~~Ll~~---~V~al~~~l~~il~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAg 405 (589)
.++++-+..+++.++..+-.. +...+...+...+... +.+- .++.+.+++ +++|+||+||||||++++||.
T Consensus 155 gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~--l~~~--~~~~~~~~~--ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 155 GISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGK--LAVE--DSFDLSNHR--IISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCc--EeeC--CCceecCCe--EEEEECCCCCCHHHHHHHHHH
Confidence 577777777777765553221 2222333333333221 1111 123344566 999999999999999999999
Q ss_pred hHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc-ccCCCccccccCccccccHHHH
Q 007789 406 WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT-RNGSDVVLVDTAGRMQDNEPLM 484 (589)
Q Consensus 406 ll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~-l~~~d~vliDTSGg~qqr~~La 484 (589)
++...+.+|.+.++|+||+|+++|++.+++.+++|++.. .++.+. .+++..+. ..++|+++|||+|+.+.+..++
T Consensus 229 ~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL-~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l 304 (407)
T PRK12726 229 QLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAEL-EEAVQYMTYVNCVDHILIDTVGRNYLAEESV 304 (407)
T ss_pred HHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHH-HHHHHHHHhcCCCCEEEEECCCCCccCHHHH
Confidence 888888899999999999999999999999999998742 345554 56666654 3578999999999999999999
Q ss_pred HHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEE
Q 007789 485 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 564 (589)
Q Consensus 485 raL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~ 564 (589)
.+|..+.....|++++||..|+ ....+.. +.+. .++..+++++|+||+|++ .++|+++++.+.+++||+
T Consensus 305 ~EL~~l~~~~~p~~~~LVLsag--~~~~d~~----~i~~----~f~~l~i~glI~TKLDET-~~~G~~Lsv~~~tglPIs 373 (407)
T PRK12726 305 SEISAYTDVVHPDLTCFTFSSG--MKSADVM----TILP----KLAEIPIDGFIITKMDET-TRIGDLYTVMQETNLPVL 373 (407)
T ss_pred HHHHHHhhccCCceEEEECCCc--ccHHHHH----HHHH----hcCcCCCCEEEEEcccCC-CCccHHHHHHHHHCCCEE
Confidence 9999999999999988887763 3332222 2222 234568999999999997 899999999999999999
Q ss_pred EEecCCCcc-cccCCCHHHHHHHhhC
Q 007789 565 FVGCGQSYT-DLKKLNVKSIVKTLLK 589 (589)
Q Consensus 565 fig~Gq~v~-DL~~~~~~~~v~~Ll~ 589 (589)
|+|+||+|| ||..++++.++++|++
T Consensus 374 ylt~GQ~VpdDi~~a~~~~Lv~~ll~ 399 (407)
T PRK12726 374 YMTDGQNITENIFRPKSRWLAERFVG 399 (407)
T ss_pred EEecCCCCCcccCCCCHHHHHHHHhc
Confidence 999999999 7999999999999984
No 18
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.97 E-value=2.4e-31 Score=290.70 Aligned_cols=254 Identities=24% Similarity=0.321 Sum_probs=181.2
Q ss_pred cchHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-HHHHHHHHh----cCcc-----------cccccccccccc
Q 007789 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-AMEEALVRI----LTPR-----------RSIDILRDVHAA 377 (589)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-al~~~l~~i----l~p~-----------~~i~iL~~Is~~ 377 (589)
.+.|...+..+.... ....++...++++.|++.||. .+.+.|..- ..+. ..+.++.+.++.
T Consensus 176 r~~l~~~~~~l~~~~---~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 252 (484)
T PRK06995 176 RGMLEEQLASLAWGE---RQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDAEAALDWVQSALAKNLPVLDSEDAL 252 (484)
T ss_pred HHHHHHHHHHHhccc---cccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhccCcccc
Confidence 444555555554211 122256677888888888887 111111111 1111 012334445555
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCC-c-EEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHH
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK-V-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~-G-kV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~ 455 (589)
+..|. +++||||||||||||+++||+++.... + +|.+..+|+||+|+++||+.|++.++++++...... +.
T Consensus 253 ~~~g~--Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~---Dl-- 325 (484)
T PRK06995 253 LDRGG--VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAA---DL-- 325 (484)
T ss_pred ccCCc--EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCch---hH--
Confidence 55666 999999999999999999999886653 3 799999999999999999999999999876432222 22
Q ss_pred HHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 007789 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 535 (589)
Q Consensus 456 ~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it 535 (589)
.+...++.++++++|||+|+.+++..++.++..+.....|...+||..++++.+...+ .+..+ +..+++
T Consensus 326 -~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~------i~~~f----~~~~~~ 394 (484)
T PRK06995 326 -RLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE------VVQAY----RGPGLA 394 (484)
T ss_pred -HHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH------HHHHh----ccCCCC
Confidence 2334566788999999999999887777666654444446555566566665543322 22222 335899
Q ss_pred EEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhhC
Q 007789 536 GILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 589 (589)
Q Consensus 536 ~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll~ 589 (589)
++|+||+|++ .++|.++++.+.+++||.|+|+||+|| ||+.|+++.|+++||+
T Consensus 395 g~IlTKlDet-~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 395 GCILTKLDEA-ASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred EEEEeCCCCc-ccchHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhc
Confidence 9999999998 899999999999999999999999995 9999999999999984
No 19
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.97 E-value=7.2e-31 Score=269.10 Aligned_cols=242 Identities=23% Similarity=0.355 Sum_probs=195.4
Q ss_pred hhhHHHHHHHHHHHHHHhhHH-HHHHHHHHh----cCcc----cc--cccccccccccccC-----CceEEEEEecCCCc
Q 007789 332 KADLEPALKALKDRLMTKNVA-AMEEALVRI----LTPR----RS--IDILRDVHAAKEQR-----KPYVVVFVGVNGVG 395 (589)
Q Consensus 332 ~~~l~~~l~~l~~~Ll~~~V~-al~~~l~~i----l~p~----~~--i~iL~~Is~~i~~G-----ep~iI~LVGpNGvG 395 (589)
.+.+.+.+++++..|++.||. .+...+... +... .. ..++.++++.+..+ ++.+++|+|+||+|
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~~~~~~vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~G 87 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVG 87 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCCCccccHHHHHHhcccEEeeCCcccccCCCCEEEEECCCCCc
Confidence 456677788899999999998 233333221 1111 01 12467777776533 22399999999999
Q ss_pred HHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc-ccCCCccccccC
Q 007789 396 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT-RNGSDVVLVDTA 474 (589)
Q Consensus 396 KTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~-l~~~d~vliDTS 474 (589)
|||++.+|++.+...+.+|.+..+|.+|+++++|++.+++.++++++.. .++..+ .++++.+. ..++|+++|||+
T Consensus 88 KTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~---~~~~~l-~~~l~~l~~~~~~D~ViIDt~ 163 (270)
T PRK06731 88 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAM-TRALTYFKEEARVDYILIDTA 163 (270)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec---CCHHHH-HHHHHHHHhcCCCCEEEEECC
Confidence 9999999999988778899999999999999999999999999987642 344443 45665553 346899999999
Q ss_pred ccccccHHHHHHHHhhhhhcCCCEEEEEecCCC-CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhh
Q 007789 475 GRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAAL 553 (589)
Q Consensus 475 Gg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~-GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~al 553 (589)
|+.+++..++++|.+++...+|+.++||..+++ +.|..++.+.|+ ..+++++|+||+|++ .++|.++
T Consensus 164 Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~-----------~~~~~~~I~TKlDet-~~~G~~l 231 (270)
T PRK06731 164 GKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK-----------DIHIDGIVFTKFDET-ASSGELL 231 (270)
T ss_pred CCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC-----------CCCCCEEEEEeecCC-CCccHHH
Confidence 999999999999999999999999888888864 567777766662 359999999999998 7999999
Q ss_pred HhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhhC
Q 007789 554 SMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 589 (589)
Q Consensus 554 s~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll~ 589 (589)
++.+.+++||.|+|+||+|| ||+.++++.+++.||+
T Consensus 232 ~~~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~ 268 (270)
T PRK06731 232 KIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ 268 (270)
T ss_pred HHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhc
Confidence 99999999999999999999 9999999999999984
No 20
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=2.1e-30 Score=277.67 Aligned_cols=192 Identities=24% Similarity=0.332 Sum_probs=158.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHhHhh----CCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHH
Q 007789 381 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 456 (589)
Q Consensus 381 Gep~iI~LVGpNGvGKTTlLakLAgll~~----~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~ 456 (589)
..|.+++|+||||||||||+++||.++.. .+.+|.+.++|+||+|+++|+++|++.+++|+.... .... ...
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~---~~~~-l~~ 247 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE---SFKD-LKE 247 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC---cHHH-HHH
Confidence 34679999999999999999999988763 367999999999999999999999999999975422 2222 344
Q ss_pred HHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCC-EEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 007789 457 AIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD-LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 535 (589)
Q Consensus 457 al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~Pd-lILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it 535 (589)
++.. ..++|+++|||+|+.+.+...+..|.+++....|+ .++||..+|++.+... +.| ..+ ...+++
T Consensus 248 ~L~~--~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~--~~~----~~~----~~~~~~ 315 (388)
T PRK12723 248 EITQ--SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK--EIF----HQF----SPFSYK 315 (388)
T ss_pred HHHH--hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH--HHH----HHh----cCCCCC
Confidence 4444 36799999999999998887777888887766654 6888899999854332 222 222 345899
Q ss_pred EEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhhC
Q 007789 536 GILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 589 (589)
Q Consensus 536 ~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll~ 589 (589)
++|+||+|++ .++|.++++.+.+++||.|+|+||+|| ||+.|+++.|++.|++
T Consensus 316 ~~I~TKlDet-~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g 369 (388)
T PRK12723 316 TVIFTKLDET-TCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKING 369 (388)
T ss_pred EEEEEeccCC-CcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcC
Confidence 9999999998 899999999999999999999999996 9999999999999974
No 21
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=2.7e-30 Score=276.79 Aligned_cols=244 Identities=24% Similarity=0.340 Sum_probs=185.1
Q ss_pred CCcCChhhHHHHHHHHHHHHHHhhHH-H----HHHHHHHhcCcccc----------cccccc-cc-----cccc-cCCce
Q 007789 327 KANLDKADLEPALKALKDRLMTKNVA-A----MEEALVRILTPRRS----------IDILRD-VH-----AAKE-QRKPY 384 (589)
Q Consensus 327 ~~~l~~~~l~~~l~~l~~~Ll~~~V~-a----l~~~l~~il~p~~~----------i~iL~~-Is-----~~i~-~Gep~ 384 (589)
.++|+++++.+.+..+.+.|++.+|. . |-+.+.+.+.+... .+.|.. +. +... ..++.
T Consensus 145 ~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~ 224 (432)
T PRK12724 145 ETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRK 224 (432)
T ss_pred cccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhcccchhhhhhcccCCCe
Confidence 56789999999999999999999888 1 22222221111110 011111 00 1100 12356
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH-hhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL-LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll-~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
+++|+||+||||||++.+||..+ ...+.+|.+.++|+||+++++|++.+++.++++++... .+.++.+.+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~-------~~~~l~~~l~~ 297 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK-------DIKKFKETLAR 297 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH-------HHHHHHHHHHh
Confidence 99999999999999999999754 45577999999999999999999999999999875321 12234444444
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhc---CCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLN---NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 540 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~---~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlT 540 (589)
.++|+++|||+|+++++...+.+|.++.... .|..++||..++.+.+...+...+ +...+++++|+|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~----------f~~~~~~glIlT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA----------YESLNYRRILLT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHH----------hcCCCCCEEEEE
Confidence 6889999999999999999999999988765 355778889999998544322111 234599999999
Q ss_pred cccccccchhhhhHhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhh
Q 007789 541 KFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLL 588 (589)
Q Consensus 541 KlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll 588 (589)
|+|++ +++|.++++.+.+++||.|+|+||+|| ||..++++.+++.|+
T Consensus 368 KLDEt-~~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~ 415 (432)
T PRK12724 368 KLDEA-DFLGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECVV 415 (432)
T ss_pred cccCC-CCccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence 99998 899999999999999999999999998 999999999999876
No 22
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=5.8e-29 Score=264.79 Aligned_cols=211 Identities=25% Similarity=0.345 Sum_probs=170.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-C-cEEEEcccccCccchhhhhHhhhhccccceeccC
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-K-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKG 445 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-~-GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~ 445 (589)
+.++...++.+..|. +++|+||||||||||+++|++.+... + .+|.+..+|+||+|+++|+++|++.+++++....
T Consensus 124 l~~~~~~~~~~~~g~--ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~ 201 (374)
T PRK14722 124 LPVLDSEDALMERGG--VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVK 201 (374)
T ss_pred chhhcCCCccccCCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecC
Confidence 445666666677888 99999999999999999999876543 4 4899999999999999999999999999987654
Q ss_pred CCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH-HHHHHHHHHH
Q 007789 446 YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ-LSKFNQKLAD 524 (589)
Q Consensus 446 ~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q-~~~f~~~l~~ 524 (589)
...+.. .++. .+.++++++|||+|+.+.+..++..|..+.....|...+||..++++.+...+ ...|.....
T Consensus 202 ~~~~l~----~~l~--~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~- 274 (374)
T PRK14722 202 DGGDLQ----LALA--ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAG- 274 (374)
T ss_pred CcccHH----HHHH--HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhc-
Confidence 444432 2333 34578999999999999999999988887777778888889999999887653 233422210
Q ss_pred hhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhhC
Q 007789 525 LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 589 (589)
Q Consensus 525 l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll~ 589 (589)
.......+++++|+||+|++ .++|.++++.+.+++||.|+|+||+|| ||..++++.+++++++
T Consensus 275 -~p~~~~~~~~~~I~TKlDEt-~~~G~~l~~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~ 338 (374)
T PRK14722 275 -QPKAALPDLAGCILTKLDEA-SNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFC 338 (374)
T ss_pred -ccccccCCCCEEEEeccccC-CCccHHHHHHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhc
Confidence 00001125899999999998 899999999999999999999999998 8999999999998873
No 23
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.96 E-value=1.2e-28 Score=265.95 Aligned_cols=192 Identities=28% Similarity=0.357 Sum_probs=156.7
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHhhC--CcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHH
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 456 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~--~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~ 456 (589)
..|+ +++||||||||||||+++||+.+... ..+|.+..+|+||+|+++|+..+++.+++++.... ++.+. ..
T Consensus 189 ~~g~--vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~---~~~dl-~~ 262 (420)
T PRK14721 189 EQGG--VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIK---DIADL-QL 262 (420)
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCC---CHHHH-HH
Confidence 4666 99999999999999999999865322 24788899999999999999999999999986432 22222 22
Q ss_pred HHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccE
Q 007789 457 AIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG 536 (589)
Q Consensus 457 al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~ 536 (589)
++ ..+.+++.++|||+|+.+++..++..|..+.....|..++||..++++.+... +++.. ++..++++
T Consensus 263 al--~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~------~~~~~----f~~~~~~~ 330 (420)
T PRK14721 263 ML--HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD------EVISA----YQGHGIHG 330 (420)
T ss_pred HH--HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH------HHHHH----hcCCCCCE
Confidence 23 34678899999999999999999999998766667877888888887654332 22222 23469999
Q ss_pred EEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhhC
Q 007789 537 ILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 589 (589)
Q Consensus 537 IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll~ 589 (589)
+|+||+|++ .++|.++++++.+++||.|+|+||+|| ||+.++++.|+++||+
T Consensus 331 ~I~TKlDEt-~~~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 331 CIITKVDEA-ASLGIALDAVIRRKLVLHYVTNGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred EEEEeeeCC-CCccHHHHHHHHhCCCEEEEECCCCchhhhhhCCHHHHHHHHhc
Confidence 999999998 899999999999999999999999996 9999999999999984
No 24
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.95 E-value=2.1e-27 Score=257.95 Aligned_cols=192 Identities=35% Similarity=0.503 Sum_probs=156.0
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHh-h-CCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHH
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-Q-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 456 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~-~-~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~ 456 (589)
..|+ +++|+||+||||||++.+||+.+. . .+.+|.+..+|+||+|+++|++.|++.++++++... ++... ..
T Consensus 219 ~~~~--~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~---~~~~l-~~ 292 (424)
T PRK05703 219 KQGG--VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVY---DPKEL-AK 292 (424)
T ss_pred cCCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccC---CHHhH-HH
Confidence 3466 999999999999999999999876 3 456999999999999999999999999999986432 22222 33
Q ss_pred HHHHhcccCCCccccccCccccccHHHHHHHHhhhh-hcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 007789 457 AIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY-LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 535 (589)
Q Consensus 457 al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~-~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it 535 (589)
++.. +.++|+++|||+|+.+.+...+..|..++. ...|..++||..++.+..... +++..+ +..+++
T Consensus 293 ~l~~--~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~------~~~~~f----~~~~~~ 360 (424)
T PRK05703 293 ALEQ--LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK------DIYKHF----SRLPLD 360 (424)
T ss_pred HHHH--hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH------HHHHHh----CCCCCC
Confidence 4443 346899999999999999999999988887 446767777777777643322 222222 345789
Q ss_pred EEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhhC
Q 007789 536 GILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 589 (589)
Q Consensus 536 ~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll~ 589 (589)
++|+||+|++ ..+|.++++.+.+++||.|+|+||+|| ||+.|++++++++||+
T Consensus 361 ~vI~TKlDet-~~~G~i~~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~ 414 (424)
T PRK05703 361 GLIFTKLDET-SSLGSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLG 414 (424)
T ss_pred EEEEeccccc-ccccHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhc
Confidence 9999999998 899999999999999999999999996 9999999999999984
No 25
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.7e-26 Score=225.93 Aligned_cols=184 Identities=23% Similarity=0.268 Sum_probs=146.4
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhc
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARR 436 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~ 436 (589)
...+|++|++++.+|+ +++||||+||||||+|+||.++-.+++|+|.+.|.++. ++|+|+|...+..+
T Consensus 14 ~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH 91 (240)
T COG1126 14 DKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPH 91 (240)
T ss_pred CeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccccccccc
Confidence 3579999999999999 99999999999999999999999999999999997653 38999997766555
Q ss_pred ccc-------ceeccCCC-CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 437 LQV-------PIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 437 l~v-------~l~~~~~~-~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
+.+ |....+.. .++.+.|.+.++.+++.+. +.++...|||||||++|||||+ ++|+++|| ||||+
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa-----M~P~vmLF-DEPTS 165 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA-----MDPKVMLF-DEPTS 165 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc-----CCCCEEee-cCCcc
Confidence 522 22222222 3345677888888888654 6677777999999999999999 79999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
.|||.-..... +.+.++++. +.|.+++|+ + .|.|-.+ .-.|.|+-.|..++
T Consensus 166 ALDPElv~EVL-~vm~~LA~e----GmTMivVTH--E----M~FAr~V----adrviFmd~G~iie 216 (240)
T COG1126 166 ALDPELVGEVL-DVMKDLAEE----GMTMIIVTH--E----MGFAREV----ADRVIFMDQGKIIE 216 (240)
T ss_pred cCCHHHHHHHH-HHHHHHHHc----CCeEEEEec--h----hHHHHHh----hheEEEeeCCEEEE
Confidence 99999876555 777888776 789999987 2 2344444 44799999996653
No 26
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=3e-26 Score=232.31 Aligned_cols=183 Identities=21% Similarity=0.231 Sum_probs=147.6
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ 438 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l~ 438 (589)
..+|+++||++++|+ +++|+|||||||||||++|+|+++|.+|+|.+.|.++. ++|+++|.......+.
T Consensus 15 ~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t 92 (258)
T COG1120 15 KPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92 (258)
T ss_pred eeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence 468999999999999 99999999999999999999999999999999999984 4899999765444332
Q ss_pred c------------ceeccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 439 V------------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 439 v------------~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
| .++. ..+.++.+++.++++.+++..+....+++ |||++|++.||++|++ +|+++|| |||
T Consensus 93 V~d~V~~GR~p~~~~~~-~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ-----~~~iLLL-DEP 165 (258)
T COG1120 93 VYELVLLGRYPHLGLFG-RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ-----ETPILLL-DEP 165 (258)
T ss_pred EeehHhhcCCccccccc-CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc-----CCCEEEe-CCC
Confidence 1 1222 23444556788999999999988888888 9999999999999997 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
|+.||..+|.+.+ +.+.++... .++++|++++ |. +.+....--+..+-.|+-+.
T Consensus 166 Ts~LDi~~Q~evl-~ll~~l~~~---~~~tvv~vlH-Dl---------N~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 166 TSHLDIAHQIEVL-ELLRDLNRE---KGLTVVMVLH-DL---------NLAARYADHLILLKDGKIVA 219 (258)
T ss_pred ccccCHHHHHHHH-HHHHHHHHh---cCCEEEEEec-CH---------HHHHHhCCEEEEEECCeEEe
Confidence 9999999998777 777777744 3777777766 43 34445556677777777664
No 27
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.3e-26 Score=231.06 Aligned_cols=161 Identities=24% Similarity=0.331 Sum_probs=132.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc------CccchhhhhHhhhhcc-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLRTHARRL----- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt------~RigaveQL~~~~~~l----- 437 (589)
.+|++|+|++++|+ +++||||||||||||++.|+|+++|..|+|.+.+..+ -|+|||+|...+-..+
T Consensus 18 ~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~ 95 (254)
T COG1121 18 PVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVK 95 (254)
T ss_pred eeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHH
Confidence 49999999999999 9999999999999999999999999999999998754 4799999966332222
Q ss_pred ---ccc------eeccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 438 ---QVP------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 438 ---~v~------l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
.+. ++ +.+.+.+.+.+.++++.+++.++....|.. ||||+||+-|||||+. +|+++|| |||++
T Consensus 96 d~V~~g~~~~~g~~-~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~-----~p~lllL-DEP~~ 168 (254)
T COG1121 96 DVVLLGRYGKKGWF-RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ-----NPDLLLL-DEPFT 168 (254)
T ss_pred HHHHccCccccccc-ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc-----CCCEEEe-cCCcc
Confidence 111 11 123344567889999999999998888877 9999999999999995 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
|+|+..+...+ +.|.++.+. +.+++++|+ |.
T Consensus 169 gvD~~~~~~i~-~lL~~l~~e----g~tIl~vtH-DL 199 (254)
T COG1121 169 GVDVAGQKEIY-DLLKELRQE----GKTVLMVTH-DL 199 (254)
T ss_pred cCCHHHHHHHH-HHHHHHHHC----CCEEEEEeC-Cc
Confidence 99999875444 788887764 778888877 54
No 28
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.93 E-value=6.6e-25 Score=240.46 Aligned_cols=190 Identities=29% Similarity=0.388 Sum_probs=150.0
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHhhC--CcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHH
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 456 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~--~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~ 456 (589)
..|+ +|+|+||+|+|||||+.+|+.++... +++|.+..+|+||+|+.+|++.+++.+++++.... +. .....
T Consensus 348 ~~G~--vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~---d~-~~L~~ 421 (559)
T PRK12727 348 ERGG--VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEAD---SA-ESLLD 421 (559)
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecC---cH-HHHHH
Confidence 4677 99999999999999999999876544 46899999999999999999999999998876432 22 22344
Q ss_pred HHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccE
Q 007789 457 AIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG 536 (589)
Q Consensus 457 al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~ 536 (589)
+++.+ .++|+++|||+|+++.+..++..|..|........+|+|+-.+...|.....+.| . ..++++
T Consensus 422 aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f-------~----~~~~~g 488 (559)
T PRK12727 422 LLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF-------A----HAKPQG 488 (559)
T ss_pred HHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH-------H----hhCCeE
Confidence 55543 4689999999999998888888776555444444455545444444544333333 2 227899
Q ss_pred EEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc-cccCCCHHHHHHHhh
Q 007789 537 ILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLL 588 (589)
Q Consensus 537 IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~-DL~~~~~~~~v~~Ll 588 (589)
+|+||+|++ .++|.++++.+.+++||.|+|+||+|+ ||+.+++..+|++|.
T Consensus 489 vILTKlDEt-~~lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~ 540 (559)
T PRK12727 489 VVLTKLDET-GRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLE 540 (559)
T ss_pred EEEecCcCc-cchhHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHH
Confidence 999999997 899999999999999999999999996 999999999999875
No 29
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=4.6e-26 Score=225.86 Aligned_cols=162 Identities=21% Similarity=0.265 Sum_probs=132.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc------------CccchhhhhH----
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAVEQLR---- 431 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt------------~RigaveQL~---- 431 (589)
..|+++|++.+.+|+ +++|+||+|+||||+|+.|.|+++|+.|+|.+.|.|+ .|+|.++|.-
T Consensus 21 ~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFs 98 (263)
T COG1127 21 RVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFS 98 (263)
T ss_pred EEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccccc
Confidence 468999999999999 9999999999999999999999999999999999987 2477777754
Q ss_pred --hhhhccccceeccCCC--CCHHHHHHHHHHHhcccCC--CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 432 --THARRLQVPIFEKGYE--KDPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 432 --~~~~~l~v~l~~~~~~--~d~~~ia~~al~~a~l~~~--d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+..+|+.+|+++...- ....+.+..-++.+++.+. +..+-+.||||++|++|||||+ .+|+++++ |||
T Consensus 99 sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia-----ldPell~~-DEP 172 (263)
T COG1127 99 SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA-----LDPELLFL-DEP 172 (263)
T ss_pred ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh-----cCCCEEEe-cCC
Confidence 4456656665543211 1123455555677777654 5666777999999999999999 59999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+||||+. ...|.+.+.++.+. .+.|.+++|+
T Consensus 173 tsGLDPI~-a~~~~~LI~~L~~~---lg~T~i~VTH 204 (263)
T COG1127 173 TSGLDPIS-AGVIDELIRELNDA---LGLTVIMVTH 204 (263)
T ss_pred CCCCCcch-HHHHHHHHHHHHHh---hCCEEEEEEC
Confidence 99999997 57888999988876 4999999998
No 30
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.7e-25 Score=221.34 Aligned_cols=162 Identities=23% Similarity=0.265 Sum_probs=132.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc----CccchhhhhH------hhhhcc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLR------THARRL 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt----~RigaveQL~------~~~~~l 437 (589)
..+|++|++++.+|+ +++||||+||||||||+.|||+.+|+.|+|.+.|..+ -++|+++|.. +..+|+
T Consensus 16 ~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV 93 (248)
T COG1116 16 VEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNV 93 (248)
T ss_pred eEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhh
Confidence 579999999999999 9999999999999999999999999999999999765 3488999954 456666
Q ss_pred ccceeccCCC-CCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 438 QVPIFEKGYE-KDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 438 ~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
.+++...+.. .+..+++.++++.+++.++.. .+-..||||+||++|||+|+ .+|+++|| |||++.||+..+.
T Consensus 94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~-----~~P~lLLl-DEPFgALDalTR~ 167 (248)
T COG1116 94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALA-----TRPKLLLL-DEPFGALDALTRE 167 (248)
T ss_pred eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHh-----cCCCEEEE-cCCcchhhHHHHH
Confidence 5555444322 234467889999999998865 44555999999999999999 59999998 9999999999864
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+++.+.++.... +.|++++|+
T Consensus 168 -~lq~~l~~lw~~~---~~TvllVTH 189 (248)
T COG1116 168 -ELQDELLRLWEET---RKTVLLVTH 189 (248)
T ss_pred -HHHHHHHHHHHhh---CCEEEEEeC
Confidence 4556666665443 688999998
No 31
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=1e-25 Score=234.10 Aligned_cols=162 Identities=22% Similarity=0.253 Sum_probs=134.0
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc-
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 438 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~- 438 (589)
..+|++|+|.+++|+ +++|+||||||||||+++|+|++.|++|+|.+.|.|.+ ++|+++|...+.+.+.
T Consensus 18 ~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~ 95 (293)
T COG1131 18 KTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTV 95 (293)
T ss_pred CEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccH
Confidence 568999999999999 99999999999999999999999999999999998875 4899999888777773
Q ss_pred ---cceeccCCCCC---HHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 439 ---VPIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 439 ---v~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+.++...++.. ....+.++++.+++.......+.+ |+||+||+.||.+|. ++|+++|| ||||+|||+
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~-----~~P~lliL-DEPt~GLDp 169 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL-----HDPELLIL-DEPTSGLDP 169 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh-----cCCCEEEE-CCCCcCCCH
Confidence 34555555532 345778899999887655555665 999999999999999 59999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+ ..|.+.|..++..+ +.++++.|+
T Consensus 170 ~~~-~~~~~~l~~l~~~g---~~tvlissH 195 (293)
T COG1131 170 ESR-REIWELLRELAKEG---GVTILLSTH 195 (293)
T ss_pred HHH-HHHHHHHHHHHhCC---CcEEEEeCC
Confidence 976 56668999998765 345555554
No 32
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=6.9e-25 Score=218.47 Aligned_cols=180 Identities=23% Similarity=0.234 Sum_probs=138.4
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc----------Cc---cchhhhhHhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FR---SGAVEQLRTHA 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt----------~R---igaveQL~~~~ 434 (589)
+.+|++++|++++|+ +++|+||+||||||||++|+++.+|++|.|.+.+.|+ || +|+|+|...+.
T Consensus 18 ~~~L~~v~l~i~~Ge--~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGE--FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 689999999999999 9999999999999999999999999999999999887 22 89999977554
Q ss_pred hcc------ccceeccCCCC-CHHHHHHHHHHHhcccCC-C-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 435 RRL------QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-D-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 435 ~~l------~v~l~~~~~~~-d~~~ia~~al~~a~l~~~-d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+.+ .+|+...+... .....+..+++.+++.+. . ..+-..|||+|||++|||||+ ++|++||. |||
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~-----~~P~iilA-DEP 169 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI-----NNPKIILA-DEP 169 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh-----cCCCeEEe-eCc
Confidence 444 45543333222 334556667777777633 3 345566999999999999999 59999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCC
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq 570 (589)
|.+||..+....+ +.+..+.+. .+.+.|++|+ |.. .....--+.++-.|+
T Consensus 170 TgnLD~~t~~~V~-~ll~~~~~~---~g~tii~VTH-d~~----------lA~~~dr~i~l~dG~ 219 (226)
T COG1136 170 TGNLDSKTAKEVL-ELLRELNKE---RGKTIIMVTH-DPE----------LAKYADRVIELKDGK 219 (226)
T ss_pred cccCChHHHHHHH-HHHHHHHHh---cCCEEEEEcC-CHH----------HHHhCCEEEEEeCCe
Confidence 9999998875554 667666654 3889999998 331 112344677787776
No 33
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=1.5e-23 Score=201.42 Aligned_cols=183 Identities=19% Similarity=0.153 Sum_probs=146.2
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhH----
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLR---- 431 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~---- 431 (589)
..+|++|+|++++|+ ++.++||+||||||+|+.|++..+|+.|+|.++++|+- ++|.|+|..
T Consensus 15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 569999999999999 99999999999999999999999999999999999972 499999965
Q ss_pred --hhhhccccceeccCCCCC-HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 432 --THARRLQVPIFEKGYEKD-PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 432 --~~~~~l~v~l~~~~~~~d-~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
+.++++-+|+...++... ....+.++++.+++.+....+. ..|||+|||++||||+. ++|.++|. ||||-
T Consensus 93 ~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-----~~P~vLlA-DEPTG 166 (223)
T COG2884 93 DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-----NQPAVLLA-DEPTG 166 (223)
T ss_pred cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-----cCCCeEee-cCCCC
Confidence 456666666654444432 3456677888888876655554 45999999999999999 59999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
+|||....+.+ +.+.++.. .|.|++|.|+ |. .++.....|++-+..|--+.
T Consensus 167 NLDp~~s~~im-~lfeeinr----~GtTVl~ATH-d~---------~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 167 NLDPDLSWEIM-RLFEEINR----LGTTVLMATH-DL---------ELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred CCChHHHHHHH-HHHHHHhh----cCcEEEEEec-cH---------HHHHhccCcEEEEeCCEEEe
Confidence 99998765554 56666544 4788888777 43 45566688999998887654
No 34
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=7.2e-24 Score=211.54 Aligned_cols=198 Identities=18% Similarity=0.230 Sum_probs=147.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc---------CccchhhhhHhhhhccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRLQ 438 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt---------~RigaveQL~~~~~~l~ 438 (589)
..+++++|++++.|+ +++|+||+||||||||++|.+++.|++|+|.|+|.|+ .++|||-|--.+..++.
T Consensus 14 ~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T 91 (309)
T COG1125 14 KKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT 91 (309)
T ss_pred ceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCcc
Confidence 468899999999999 9999999999999999999999999999999999987 25999988665544442
Q ss_pred -------cceeccCCCCCHHHHHHHHHHHhcccC--C-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 439 -------VPIFEKGYEKDPAIVAKEAIQEATRNG--S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 439 -------v~l~~~~~~~d~~~ia~~al~~a~l~~--~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
||-...........++.+.++.+++.. | +..+-..|||+|||+.++|||+ .+|+++|+ |||+..
T Consensus 92 v~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA-----adP~ilLM-DEPFgA 165 (309)
T COG1125 92 VAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA-----ADPPILLM-DEPFGA 165 (309)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh-----cCCCeEee-cCCccc
Confidence 232222222334566788888888753 3 4566677999999999999999 59999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccchhhhhHhHHHhCCCEEEEecCCCc----c-cccCCCHHH
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSY----T-DLKKLNVKS 582 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k~G~als~~~~~g~PI~fig~Gq~v----~-DL~~~~~~~ 582 (589)
|||+.+. ...+.+..+.. ..+.|.+++|+ +|+. + ..+-.|..+..|+-+ | .+-.-....
T Consensus 166 LDpI~R~-~lQ~e~~~lq~---~l~kTivfVTHDidEA-------~----kLadri~vm~~G~i~Q~~~P~~il~~Pan~ 230 (309)
T COG1125 166 LDPITRK-QLQEEIKELQK---ELGKTIVFVTHDIDEA-------L----KLADRIAVMDAGEIVQYDTPDEILANPAND 230 (309)
T ss_pred cChhhHH-HHHHHHHHHHH---HhCCEEEEEecCHHHH-------H----hhhceEEEecCCeEEEeCCHHHHHhCccHH
Confidence 9999874 44455555554 34888899988 5553 2 234456666666554 2 344444566
Q ss_pred HHHHhh
Q 007789 583 IVKTLL 588 (589)
Q Consensus 583 ~v~~Ll 588 (589)
||+.++
T Consensus 231 FV~~f~ 236 (309)
T COG1125 231 FVEDFF 236 (309)
T ss_pred HHHHHh
Confidence 776655
No 35
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=3.5e-24 Score=212.61 Aligned_cols=190 Identities=13% Similarity=0.191 Sum_probs=159.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-----CccchhhhhHhhhhccccc---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQVP--- 440 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-----~RigaveQL~~~~~~l~v~--- 440 (589)
.+++|++|.+++|+ +++|+|+||||||||+++|.|++.|+.|+|.|.|.+. .|+||.+..|-+.+.+.+.
T Consensus 16 ~av~~isf~v~~G~--i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql 93 (300)
T COG4152 16 KAVDNISFEVPPGE--IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQL 93 (300)
T ss_pred eeecceeeeecCCe--EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHH
Confidence 57899999999999 9999999999999999999999999999999999776 3799999888777777442
Q ss_pred -eeccCCCC---CHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 441 -IFEKGYEK---DPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 441 -l~~~~~~~---d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
++....+. +....+...++++++.++....|++ |-|+||++.+..++. ++|++++| |||++||||+++
T Consensus 94 ~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisavi-----HePeLlIL-DEPFSGLDPVN~- 166 (300)
T COG4152 94 KYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVI-----HEPELLIL-DEPFSGLDPVNV- 166 (300)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHh-----cCCCEEEe-cCCccCCChhhH-
Confidence 33332232 3345566778999998888888887 999999999999999 69999999 999999999986
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEccccccccch-----------hhhhHhHHHhCCCEEEEe
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKV-----------GAALSMVYVSGAPVMFVG 567 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~-----------G~als~~~~~g~PI~fig 567 (589)
+.+.+++.++.+.+.++.++.+.+++..+.|+++ |.+-.++...|...+|+-
T Consensus 167 elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~~ie 229 (300)
T COG4152 167 ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIE 229 (300)
T ss_pred HHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceEEEe
Confidence 6777888888888877777888888888877775 667777777777777776
No 36
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.4e-24 Score=217.17 Aligned_cols=185 Identities=21% Similarity=0.217 Sum_probs=147.0
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhH---
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLR--- 431 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~--- 431 (589)
.+.+|++|++++++|+ +++|||.+|||||||+++|.++-.|++|+|.++|.|+. ++|+++|..
T Consensus 18 ~~~al~~vsL~I~~Ge--I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGE--IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCc--EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 4679999999999999 99999999999999999999999999999999998872 499999964
Q ss_pred ---hhhhccccceeccCCCC-CHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 432 ---THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 432 ---~~~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
+..+++.+|+...+..+ +...++.++++.+++.+. +.++...||||+||+.|||||+ ++|+++|+ ||||
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa-----~~P~iLL~-DEaT 169 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA-----NNPKILLC-DEAT 169 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh-----cCCCEEEe-cCcc
Confidence 55667777765555432 344667788888888764 5677788999999999999999 69999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
+.|||......+ +.|.++.. ..++|.+++|+==. ++-.+ .--++.+..|+-++
T Consensus 170 SALDP~TT~sIL-~LL~~In~---~lglTIvlITHEm~------Vvk~i----c~rVavm~~G~lvE 222 (339)
T COG1135 170 SALDPETTQSIL-ELLKDINR---ELGLTIVLITHEME------VVKRI----CDRVAVLDQGRLVE 222 (339)
T ss_pred ccCChHHHHHHH-HHHHHHHH---HcCCEEEEEechHH------HHHHH----hhhheEeeCCEEEE
Confidence 999998775444 66666654 45999999998221 12223 33567777777664
No 37
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.2e-24 Score=206.94 Aligned_cols=181 Identities=21% Similarity=0.291 Sum_probs=133.5
Q ss_pred HHHhcCcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc--------cchhhh
Q 007789 358 LVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------SGAVEQ 429 (589)
Q Consensus 358 l~~il~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R--------igaveQ 429 (589)
+++.+.+ .+.+++||+|+++.|+ |++|+|+|||||||+|++||.+|.|++|+|.++++|+-| +|.+.-
T Consensus 7 l~K~y~~--~v~AvrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~ 82 (245)
T COG4555 7 LTKSYGS--KVQAVRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG 82 (245)
T ss_pred hhhhccC--HHhhhhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecC
Confidence 3444433 4568999999999999 999999999999999999999999999999999999843 333322
Q ss_pred hHhhhhcc----ccceeccCCC---CCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 430 LRTHARRL----QVPIFEKGYE---KDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 430 L~~~~~~l----~v~l~~~~~~---~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
-..+..+| ++.+|...++ .+......+..+.+++..+.. ..-..|-||+|++.|||||.+ +|++++|
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh-----~P~i~vl 157 (245)
T COG4555 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVH-----DPSILVL 157 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhc-----CCCeEEE
Confidence 22222222 3334443332 233455666777777776644 444559999999999999994 9999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccch
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKV 549 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~ 549 (589)
||||+|||.... +.|++.+..+.+.++....+.+++..+..+||++
T Consensus 158 -DEP~sGLDi~~~-r~~~dfi~q~k~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 158 -DEPTSGLDIRTR-RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred -cCCCCCccHHHH-HHHHHHHHHhhcCCcEEEEecccHHHHHHhhheE
Confidence 999999999864 7888888888877666556666666555444443
No 38
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=4.7e-24 Score=224.87 Aligned_cols=163 Identities=21% Similarity=0.223 Sum_probs=131.9
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcccc
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV 439 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~v 439 (589)
...+|+++++.+.+|+ +++|+||+||||||+|++|||+..|++|+|.+.|.|+. .+|+|+|...+..+|.|
T Consensus 17 ~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 17 DFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred CeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcH
Confidence 3568999999999999 99999999999999999999999999999999999984 38999998766666633
Q ss_pred ------ceeccCCCC--CHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 440 ------PIFEKGYEK--DPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 440 ------~l~~~~~~~--d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
++....... +...++.++++.+++.++..... ..|||||||++|||||+ .+|+++|| |||+++||
T Consensus 95 ~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~-----~~P~vLLL-DEPlSaLD 168 (352)
T COG3842 95 EENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV-----PEPKVLLL-DEPLSALD 168 (352)
T ss_pred HHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh-----cCcchhhh-cCcccchh
Confidence 232111111 23357888899999888765555 45999999999999999 59999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..-+ ..+...++.+... .++|.|++|+
T Consensus 169 ~kLR-~~mr~Elk~lq~~---~giT~i~VTH 195 (352)
T COG3842 169 AKLR-EQMRKELKELQRE---LGITFVYVTH 195 (352)
T ss_pred HHHH-HHHHHHHHHHHHh---cCCeEEEEEC
Confidence 8754 4455666666544 4999999999
No 39
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=8.6e-24 Score=209.26 Aligned_cols=162 Identities=21% Similarity=0.237 Sum_probs=132.4
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhh
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHA 434 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~ 434 (589)
...+|.+|++.+++|+ +++|||++||||||||++|+|+..|+.|+|.+.+.++. ++|+++|-..+.
T Consensus 16 ~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 16 GHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred CceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 3578999999999999 99999999999999999999999999999999998762 489999977665
Q ss_pred hcccc------------cee---ccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCE
Q 007789 435 RRLQV------------PIF---EKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDL 498 (589)
Q Consensus 435 ~~l~v------------~l~---~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~Pdl 498 (589)
.++.+ +++ .....+.....|.++++++++.++.....++ |||+|||++|||+|.+ +|++
T Consensus 94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q-----~pki 168 (258)
T COG3638 94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ-----QPKI 168 (258)
T ss_pred cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc-----CCCE
Confidence 55411 111 1123345567788899999988877778888 9999999999999997 9999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEc
Q 007789 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 540 (589)
Q Consensus 499 ILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlT 540 (589)
||. |||+++|||....+.+ +.|+++.... ++|.++.-
T Consensus 169 ILA-DEPvasLDp~~a~~Vm-~~l~~in~~~---g~Tvi~nL 205 (258)
T COG3638 169 ILA-DEPVASLDPESAKKVM-DILKDINQED---GITVIVNL 205 (258)
T ss_pred Eec-CCcccccChhhHHHHH-HHHHHHHHHc---CCEEEEEe
Confidence 998 9999999999875554 7888887654 77766543
No 40
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.4e-23 Score=220.27 Aligned_cols=163 Identities=21% Similarity=0.225 Sum_probs=130.6
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcc-----
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL----- 437 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l----- 437 (589)
+|+++++++..|+ +++|+|||||||||||++|||+..|++|+|.|.+.|+. .+|+|+|...+..+|
T Consensus 18 ~l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 8999999999999 99999999999999999999999999999999999873 499999987665555
Q ss_pred -ccceeccCCC-CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 438 -QVPIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 438 -~v~l~~~~~~-~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
.+++...+.. .+....+.++.+.+++.++ +..+-..|||++||++|+|||.+ +|+++|| |||+++||+.-+
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr-----~P~v~L~-DEPlSnLDa~lR 169 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR-----KPKVFLL-DEPLSNLDAKLR 169 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc-----CCCEEEe-cCchhHhhHHHH
Confidence 4444333322 2334667778888888776 45555669999999999999996 9998888 999999999865
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
. .+...|..+.+ ..++|.|++|+ |.+
T Consensus 170 ~-~mr~ei~~lh~---~l~~T~IYVTH-Dq~ 195 (338)
T COG3839 170 V-LMRSEIKKLHE---RLGTTTIYVTH-DQV 195 (338)
T ss_pred H-HHHHHHHHHHH---hcCCcEEEEcC-CHH
Confidence 3 34455555544 34899999999 654
No 41
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.4e-23 Score=206.08 Aligned_cols=185 Identities=21% Similarity=0.198 Sum_probs=144.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc---------Cc-cchhhhhH-------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FR-SGAVEQLR------- 431 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt---------~R-igaveQL~------- 431 (589)
.+|++|||++.+|+ +++|+|++||||||+++.|+||.+|+.|+|.+.|... || +.+|+|.+
T Consensus 21 ~~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 58999999999999 9999999999999999999999999999999999543 22 67788865
Q ss_pred -hhhhccccceeccCCCCCHHHHHHHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 432 -THARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 432 -~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
+..+.+.-|+...+..+ ....+.++++.+++.. ++..+...|||++||++|||||. .+|+++|+ ||||++
T Consensus 99 ~tv~~~l~Epl~~~~~~~-~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~-----~~PklLIl-DEptSa 171 (252)
T COG1124 99 RTVGRILSEPLRPHGLSK-SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI-----PEPKLLIL-DEPTSA 171 (252)
T ss_pred hhHHHHHhhhhccCCccH-HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc-----cCCCEEEe-cCchhh
Confidence 33444444444333332 3344777888887753 35667778999999999999999 59999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCccccc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 576 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~ 576 (589)
||+..|++.. +.|.++.+. ++++.+++|+ | +++++...-.|+.+-.|+.++++.
T Consensus 172 LD~siQa~Il-nlL~~l~~~---~~lt~l~IsH-d---------l~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 172 LDVSVQAQIL-NLLLELKKE---RGLTYLFISH-D---------LALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred hcHHHHHHHH-HHHHHHHHh---cCceEEEEeC-c---------HHHHHHHhhheeeeeCCeEEEeec
Confidence 9999998766 566666654 4899999988 3 234444455788888888886443
No 42
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.89 E-value=9.5e-24 Score=220.62 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=124.4
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhcccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQV 439 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~v 439 (589)
..+|++|+|++++|+ +++|+||||||||||+++|+|+++|++|+|.+.|.|+. ++|+++|...+...+.+
T Consensus 20 ~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 97 (306)
T PRK13537 20 KLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTV 97 (306)
T ss_pred eEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcH
Confidence 458999999999999 99999999999999999999999999999999998863 48888887654443322
Q ss_pred ----ceeccCCCCC---HHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 440 ----PIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 440 ----~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
.++...++.. ....+.++++.+++.......+.+ ||||+|++.||++|+ .+|+++|| ||||+|||+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~-----~~P~lllL-DEPt~gLD~ 171 (306)
T PRK13537 98 RENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV-----NDPDVLVL-DEPTTGLDP 171 (306)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh-----CCCCEEEE-eCCCcCCCH
Confidence 2222223322 234556778887776544444544 999999999999999 59999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+. .+.+.|.++... +.+.+++|+
T Consensus 172 ~~~~-~l~~~l~~l~~~----g~till~sH 196 (306)
T PRK13537 172 QARH-LMWERLRSLLAR----GKTILLTTH 196 (306)
T ss_pred HHHH-HHHHHHHHHHhC----CCEEEEECC
Confidence 9874 555788877543 566666665
No 43
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=4.4e-23 Score=211.06 Aligned_cols=198 Identities=21% Similarity=0.283 Sum_probs=152.2
Q ss_pred HhcCcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccch
Q 007789 360 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGA 426 (589)
Q Consensus 360 ~il~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------Riga 426 (589)
+++.....+--+++++|.++.|+ |++|.|.+|||||||+++|.+++.|+.|+|++.+.|+. ++++
T Consensus 33 ei~~~tg~vvGv~~~sl~v~~Ge--IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sM 110 (386)
T COG4175 33 EILKKTGLVVGVNDASLDVEEGE--IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISM 110 (386)
T ss_pred HHHHhhCcEEeeccceeeecCCe--EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhh
Confidence 33444444556789999999999 99999999999999999999999999999999999983 3788
Q ss_pred hhhhHhh------hhccccceeccCCCC-CHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCE
Q 007789 427 VEQLRTH------ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDL 498 (589)
Q Consensus 427 veQL~~~------~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~Pdl 498 (589)
|+|...+ .++....+-..+..+ +..+.+.++++.+++.++.....+. |||||||+.|||||+ ++|++
T Consensus 111 VFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla-----~~~~I 185 (386)
T COG4175 111 VFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALA-----NDPDI 185 (386)
T ss_pred hhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHc-----cCCCE
Confidence 8886533 333333332233222 3346788899999999987766665 999999999999999 69999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 499 ILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
+|+ |||++.|||.-+ ..++..|.++.... ..|.+++|+ +|+. -+.|.-+.+.. +--|+.+||+|.+
T Consensus 186 lLM-DEaFSALDPLIR-~~mQdeLl~Lq~~l---~KTIvFitHDLdEA-lriG~rIaimk--dG~ivQ~Gtp~eI 252 (386)
T COG4175 186 LLM-DEAFSALDPLIR-TEMQDELLELQAKL---KKTIVFITHDLDEA-LRIGDRIAIMK--DGEIVQVGTPEEI 252 (386)
T ss_pred EEe-cCchhhcChHHH-HHHHHHHHHHHHHh---CCeEEEEecCHHHH-HhccceEEEec--CCeEEEeCCHHHH
Confidence 998 999999999965 45556666665543 567777776 8885 67777776654 6677888887765
No 44
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=7.8e-23 Score=199.75 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=122.2
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-----CcEEEEcccccC-----------ccchhhhhH
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLR 431 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-----~GkV~l~~~Dt~-----------RigaveQL~ 431 (589)
..+|++|++.+++++ |.+|+||+||||||+|++|..+.... .|+|.+.|.|+| |+|+|+|-+
T Consensus 20 ~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 20 KHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred hhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 468999999999999 99999999999999999999866544 499999999985 489999976
Q ss_pred hh-----hhcc--ccceeccCCCCCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 432 TH-----ARRL--QVPIFEKGYEKDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 432 ~~-----~~~l--~v~l~~~~~~~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
.- .+++ ++.+..... +...++++.+++.+.+-+ ++.-....|||||||++|||+|+ .+|+++
T Consensus 98 nPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA-----v~PeVl 171 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA-----VKPEVL 171 (253)
T ss_pred CCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh-----cCCcEE
Confidence 33 3333 222221111 334466777777665432 23344567999999999999999 699999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
|| ||||++|||++.. +..+.+.++.+ ..|++|+|+-
T Consensus 172 Lm-DEPtSALDPIsT~-kIEeLi~eLk~-----~yTIviVTHn 207 (253)
T COG1117 172 LM-DEPTSALDPISTL-KIEELITELKK-----KYTIVIVTHN 207 (253)
T ss_pred Ee-cCcccccCchhHH-HHHHHHHHHHh-----ccEEEEEeCC
Confidence 98 9999999999864 55577777764 6789999983
No 45
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.88 E-value=2.1e-23 Score=221.14 Aligned_cols=160 Identities=20% Similarity=0.220 Sum_probs=122.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~-- 438 (589)
.+|++|+|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.|.++. ++|+++|...+...+.
T Consensus 55 ~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 132 (340)
T PRK13536 55 AVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVR 132 (340)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHH
Confidence 58999999999999 99999999999999999999999999999999998752 4888888654433332
Q ss_pred --cceeccCCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 439 --VPIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 439 --v~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
+.++...++.. ....+.++++.+++.......+ +.||||+|++.||++|+ .+|+++|| ||||+|||+.
T Consensus 133 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~-----~~P~lLiL-DEPt~gLD~~ 206 (340)
T PRK13536 133 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI-----NDPQLLIL-DEPTTGLDPH 206 (340)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCCCCCHH
Confidence 11222223222 2244566777777765444444 45999999999999999 59999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+. .|.+.|.++... +.+++++|+
T Consensus 207 ~r~-~l~~~l~~l~~~----g~tilisSH 230 (340)
T PRK13536 207 ARH-LIWERLRSLLAR----GKTILLTTH 230 (340)
T ss_pred HHH-HHHHHHHHHHhC----CCEEEEECC
Confidence 874 555888777543 566666665
No 46
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2e-22 Score=203.10 Aligned_cols=184 Identities=21% Similarity=0.191 Sum_probs=139.9
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhh---h
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH---A 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~---~ 434 (589)
..+|+++++.+.+|+ .++|+|+|||||||+++.|+|+++|+.|.|.+.+.++. ++|+|+|.+.. .
T Consensus 17 ~~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKGE--RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 468999999999999 99999999999999999999999999999999998743 48999997621 1
Q ss_pred hcc--ccceeccCCCC---CHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 435 RRL--QVPIFEKGYEK---DPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 435 ~~l--~v~l~~~~~~~---d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
..+ .+.+-....+. +...++.++++.+++.++....+.+ |||++||++||.+|+ ++|++++| ||||+|
T Consensus 95 ~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa-----~~P~iliL-DEPta~ 168 (235)
T COG1122 95 PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA-----MGPEILLL-DEPTAG 168 (235)
T ss_pred CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH-----cCCCEEEE-cCCCCC
Confidence 111 12222222222 2346677888888888776555554 999999999999999 69999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||+..+...+ +.+.++.... +++.|++|+ |. ..+....--+..+..|+.+.
T Consensus 169 LD~~~~~~l~-~~l~~L~~~~---~~tii~~tH-d~---------~~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 169 LDPKGRRELL-ELLKKLKEEG---GKTIIIVTH-DL---------ELVLEYADRVVVLDDGKILA 219 (235)
T ss_pred CCHHHHHHHH-HHHHHHHhcC---CCeEEEEeC-cH---------HHHHhhCCEEEEEECCEEee
Confidence 9999875444 7777776553 688888887 32 12233455677888888753
No 47
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.88 E-value=1.3e-22 Score=211.40 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=121.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhcccc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQV- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~v- 439 (589)
.+|++++|.+.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.|.++. ++|+++|...+...+.+
T Consensus 7 ~~l~~vs~~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 7 KAVDGVNFKVREGE--VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 58999999999999 99999999999999999999999999999999997752 37888886544333321
Q ss_pred ---ceeccCCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 440 ---PIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 440 ---~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.++...++.. ....+.++++.+++.......+ ..||||+||+.||++|+. +|+++|| ||||+|||+.
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~lllL-DEPt~gLD~~ 158 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIH-----QPDVLFL-DEPTTGLDPR 158 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCcCCCHH
Confidence 1211112221 2345667888888765434444 459999999999999994 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+ ..+.+.|..+... +.+.+++|+
T Consensus 159 ~~-~~l~~~l~~~~~~----g~tvi~~sH 182 (302)
T TIGR01188 159 TR-RAIWDYIRALKEE----GVTILLTTH 182 (302)
T ss_pred HH-HHHHHHHHHHHhC----CCEEEEECC
Confidence 86 4555777777543 566677666
No 48
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.88 E-value=1.3e-22 Score=196.84 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=117.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------ccchhhhhHh--h--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRT--H-- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------RigaveQL~~--~-- 433 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++++++|... +
T Consensus 6 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 6 EVLKGLNFAAERGE--VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ceecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 48999999999999 99999999999999999999999999999999887642 2677777641 1
Q ss_pred ---hhccccceeccCCCCCH---HHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 434 ---ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 434 ---~~~l~v~l~~~~~~~d~---~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
.+++.+... ..+.+. ...+.++++.+++..+. ..+...||||+|++.|+++|+. +|+++|| ||||
T Consensus 84 ~tv~~nl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEPt 155 (190)
T TIGR01166 84 ADVDQDVAFGPL--NLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAM-----RPDVLLL-DEPT 155 (190)
T ss_pred ccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCc
Confidence 222211111 111121 23456677777765543 3444559999999999999995 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|||+..+. .+.+.|.++... +.+.+++|+
T Consensus 156 ~~LD~~~~~-~~~~~l~~~~~~----~~tili~sH 185 (190)
T TIGR01166 156 AGLDPAGRE-QMLAILRRLRAE----GMTVVISTH 185 (190)
T ss_pred ccCCHHHHH-HHHHHHHHHHHc----CCEEEEEee
Confidence 999998864 445777776542 567777766
No 49
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.3e-22 Score=200.23 Aligned_cols=161 Identities=23% Similarity=0.217 Sum_probs=119.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV-- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~v-- 439 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...+.+
T Consensus 14 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 14 RALDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eeecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 48999999999999 99999999999999999999999999999999987752 37888886543322211
Q ss_pred --ceeccCCCC---CHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 440 --PIFEKGYEK---DPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 440 --~l~~~~~~~---d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
.+....++. .....+.++++.+++..+. ..+...||||+||+.|+++|+. +|+++|| ||||+|||+..
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~-----~p~~lll-DEPt~~LD~~~ 165 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAR-----EPSLLLL-DEPLSALDAKL 165 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccCCHHH
Confidence 111111111 1123456677777775443 3344559999999999999995 9999998 99999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. .+.+.|.++.... +.+.+++|+
T Consensus 166 ~~-~l~~~l~~~~~~~---~~tii~~sH 189 (213)
T cd03259 166 RE-ELREELKELQREL---GITTIYVTH 189 (213)
T ss_pred HH-HHHHHHHHHHHHc---CCEEEEEec
Confidence 64 4447777765422 566677776
No 50
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.87 E-value=1.3e-22 Score=215.20 Aligned_cols=162 Identities=20% Similarity=0.207 Sum_probs=124.7
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhh-
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHA- 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~- 434 (589)
..+|++|+|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|...+.
T Consensus 18 ~~~L~~vsl~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 468999999999999 99999999999999999999999999999999998763 378888865433
Q ss_pred -----hccccceeccCCCC-CHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 435 -----RRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 435 -----~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
+++..++...+... +....+.++++.+++.++. ..+-..||||+||+.|||+|+. +|+++|+ ||||+
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~-----~P~iLLl-DEPts 169 (343)
T TIGR02314 96 SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS-----NPKVLLC-DEATS 169 (343)
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh-----CCCEEEE-eCCcc
Confidence 33322222111111 2234566788888876653 4444559999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+||+..+...+ +.|.++... .+++.+++|+
T Consensus 170 ~LD~~t~~~i~-~lL~~l~~~---~g~tiiliTH 199 (343)
T TIGR02314 170 ALDPATTQSIL-ELLKEINRR---LGLTILLITH 199 (343)
T ss_pred cCCHHHHHHHH-HHHHHHHHh---cCCEEEEEeC
Confidence 99999875444 777777543 3788888887
No 51
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=3e-22 Score=196.64 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=120.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------ccchhhhhHh-hhhcc----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLRT-HARRL---- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------RigaveQL~~-~~~~l---- 437 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++|+++|... +...+
T Consensus 14 ~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 14 EILDDLSLDLYAGE--IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred ceeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 48999999999999 99999999999999999999999999999999988752 4788888642 11111
Q ss_pred ccceeccCCCCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 438 QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 438 ~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
++.+....+. .....+.++++.+++..+....+. .||||+|++.|+++|.. +|+++|| ||||+|||+..+ .
T Consensus 92 ~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEPt~~LD~~~~-~ 163 (205)
T cd03226 92 ELLLGLKELD-AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLS-----GKDLLIF-DEPTSGLDYKNM-E 163 (205)
T ss_pred HHhhhhhhcC-ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHh-----CCCEEEE-eCCCccCCHHHH-H
Confidence 1111111112 223456778888887665444444 49999999999999995 9999998 999999999876 4
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.|..+... +.+.+++|+
T Consensus 164 ~l~~~l~~~~~~----~~tii~~sH 184 (205)
T cd03226 164 RVGELIRELAAQ----GKAVIVITH 184 (205)
T ss_pred HHHHHHHHHHHC----CCEEEEEeC
Confidence 555777776532 566777776
No 52
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.87 E-value=1.8e-22 Score=199.66 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=118.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~~~ 436 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|++|+|.+.+.++. ++++++|...+...
T Consensus 17 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 17 PALDNLNFHITKGE--MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred eEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 48999999999999 99999999999999999999999999999999987652 26777776433222
Q ss_pred c------ccceeccCCCC-CHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 437 L------QVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 437 l------~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
+ .......+... +....+.++++.+++..+....+ ..||||+||+.|+++|+. +|+++|| ||||+|
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~-----~p~llll-DEPt~~ 168 (216)
T TIGR00960 95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH-----KPPLLLA-DEPTGN 168 (216)
T ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCCc
Confidence 2 11111111111 12345667788877765444444 459999999999999995 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+. .+.+.|..+... +.+.|++|+
T Consensus 169 LD~~~~~-~l~~~l~~~~~~----~~tii~vsH 196 (216)
T TIGR00960 169 LDPELSR-DIMRLFEEFNRR----GTTVLVATH 196 (216)
T ss_pred CCHHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 9999864 444677766532 566777777
No 53
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.5e-22 Score=200.97 Aligned_cols=161 Identities=24% Similarity=0.239 Sum_probs=119.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc----CccchhhhhHhhhhcccc----c
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHARRLQV----P 440 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt----~RigaveQL~~~~~~l~v----~ 440 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|++|+|.+.+.++ .++++++|...+...+.+ .
T Consensus 18 ~il~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 18 TALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred EEEeceeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHH
Confidence 58999999999999 9999999999999999999999999999999998775 247888886543332211 1
Q ss_pred eeccCCCC---CHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 441 IFEKGYEK---DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 441 l~~~~~~~---d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
+....++. .....+.++++.+++..+ +..+-..||||+|++.|+++|+. +|+++|| ||||+|||+..+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~-----~p~lllL-DEPt~~LD~~~~~~ 169 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV-----DPDVLLL-DEPFSALDALTREQ 169 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-CCCCCCCCHHHHHH
Confidence 11111111 122445667777777544 33344559999999999999995 9999998 99999999998754
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.+.|.++.... +.+.+++|+
T Consensus 170 -~~~~l~~~~~~~---~~tiii~sH 190 (220)
T cd03293 170 -LQEELLDIWRET---GKTVLLVTH 190 (220)
T ss_pred -HHHHHHHHHHHc---CCEEEEEec
Confidence 447776664321 566777776
No 54
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.8e-22 Score=202.29 Aligned_cols=161 Identities=21% Similarity=0.294 Sum_probs=118.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~~~ 436 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++++++|...+...
T Consensus 14 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 14 TVLKGVDLDVRRGE--ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 58999999999999 99999999999999999999999999999999987642 26777776433222
Q ss_pred ccc----ceeccCC-CCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 437 LQV----PIFEKGY-EKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 437 l~v----~l~~~~~-~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
+.+ .+....+ ... ....+.++++.+++..+....+ ..||||+|++.||++|+. +|+++|| ||||+
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~-----~p~llll-DEPt~ 165 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL-----DPELLLY-DEPTA 165 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEe-cCCcc
Confidence 211 1110101 111 2244566777777765433344 459999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+. .+.+.|..+... .+.+.+++|+
T Consensus 166 ~LD~~~~~-~l~~~l~~~~~~---~~~tvi~vsH 195 (235)
T cd03261 166 GLDPIASG-VIDDLIRSLKKE---LGLTSIMVTH 195 (235)
T ss_pred cCCHHHHH-HHHHHHHHHHHh---cCcEEEEEec
Confidence 99998864 444777766542 2567777776
No 55
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.87 E-value=2.2e-22 Score=199.15 Aligned_cols=161 Identities=22% Similarity=0.215 Sum_probs=118.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHAR 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~~ 435 (589)
.+|++++|++++|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++++++|...+..
T Consensus 18 ~il~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 18 QALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eEEeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 58999999999999 99999999999999999999999999999999886542 2677777643322
Q ss_pred cc------ccceeccCCC-CCHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 436 RL------QVPIFEKGYE-KDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 436 ~l------~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
.+ .......+.. ......+.++++.+++.... ..+-..||||+|++.|+++|+. +|+++|| ||||+
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~lllL-DEP~~ 169 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN-----DPKIILA-DEPTG 169 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc-----CCCEEEE-cCCcc
Confidence 22 1111111111 11223456677777775543 3334459999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+. .+.+.|.++... .+.+.|++|+
T Consensus 170 ~LD~~~~~-~l~~~l~~~~~~---~~~tii~~sH 199 (218)
T cd03255 170 NLDSETGK-EVMELLRELNKE---AGTTIVVVTH 199 (218)
T ss_pred cCCHHHHH-HHHHHHHHHHHh---cCCeEEEEEC
Confidence 99998864 455777777542 2567777777
No 56
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.7e-22 Score=201.12 Aligned_cols=184 Identities=16% Similarity=0.204 Sum_probs=137.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc----------cchhhhhHhh----
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----------SGAVEQLRTH---- 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R----------igaveQL~~~---- 433 (589)
+.++++|+|++++|+ +++|||||||||||++++|+|+++|++|+|.+.|.|+.+ ++--+|....
T Consensus 17 l~Al~~Vsl~v~~Ge--i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~l 94 (250)
T COG0411 17 LTAVNDVSLEVRPGE--IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94 (250)
T ss_pred EEEEeceeEEEcCCe--EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCC
Confidence 578999999999999 999999999999999999999999999999999998732 2333454333
Q ss_pred --hhcccccee----------ccCC---CCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCC
Q 007789 434 --ARRLQVPIF----------EKGY---EKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPD 497 (589)
Q Consensus 434 --~~~l~v~l~----------~~~~---~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~Pd 497 (589)
.+++.+... ...+ ..+..+.|.++++.+++.+....+... |+|+|++++|||+|+ .+|.
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa-----~~P~ 169 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALA-----TQPK 169 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHh-----cCCC
Confidence 233222211 1111 223446777888888888877777765 999999999999999 5999
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 498 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 498 lILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
++|| |||++|+.+....+.+ +.|.++.+.. +++.+++.+ | ...+.++ .--|..+-.|+.+.
T Consensus 170 lLLL-DEPaAGln~~e~~~l~-~~i~~i~~~~---g~tillIEH-d-----M~~Vm~l----~dri~Vl~~G~~IA 230 (250)
T COG0411 170 LLLL-DEPAAGLNPEETEELA-ELIRELRDRG---GVTILLIEH-D-----MKLVMGL----ADRIVVLNYGEVIA 230 (250)
T ss_pred EEEe-cCccCCCCHHHHHHHH-HHHHHHHhcC---CcEEEEEEe-c-----cHHHhhh----ccEEEeccCCcCcc
Confidence 9998 9999999999875544 7777777643 688777655 2 2233333 34677888888764
No 57
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3e-22 Score=198.77 Aligned_cols=182 Identities=18% Similarity=0.177 Sum_probs=129.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhcccc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQV- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~v- 439 (589)
.+|++++|++.+|+ +++|+|+||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...+.+
T Consensus 14 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 14 EAVRGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred EeeeceeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 58999999999999 99999999999999999999999999999999887642 37788886543332221
Q ss_pred ---ceeccCCCCC---HHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 440 ---PIFEKGYEKD---PAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 440 ---~l~~~~~~~d---~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.+....++.. ....+.++++.+++..+. ..+-..||||+|++.|+++|+. +|+++|| ||||+|||+.
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~-----~p~llll-DEPt~~LD~~ 165 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH-----RPEVLFL-DEPTIGLDPQ 165 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCccCCCHH
Confidence 1111111211 234556777877776543 3344459999999999999994 9999998 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
.+ ..+.+.|.++.... +.+.+++|+ |.. ......-.|.++..|+-+
T Consensus 166 ~~-~~l~~~l~~~~~~~---~~tvi~~tH-~~~---------~~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 166 TR-AHVWEYIEKLKEEF---GMTILLTTH-YME---------EAEQLCDRVAIIDHGRII 211 (220)
T ss_pred HH-HHHHHHHHHHHHhc---CCEEEEEeC-CHH---------HHHHhCCEEEEEeCCEEE
Confidence 76 45557777775432 567777776 321 112223356777777654
No 58
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=3.2e-22 Score=197.83 Aligned_cols=187 Identities=20% Similarity=0.217 Sum_probs=132.4
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhc
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARR 436 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~ 436 (589)
.+.+|++|+|+++.|+ +++++|+|||||||||+.|+|++++.+|+|.+.|.|+. .+++|+|-+.+...
T Consensus 15 ~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 15 KIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred ceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 3679999999999999 99999999999999999999999999999999999983 28899998866555
Q ss_pred ccc------ceeccCCCCCHHHHHHHHHHHhc-ccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 437 LQV------PIFEKGYEKDPAIVAKEAIQEAT-RNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 437 l~v------~l~~~~~~~d~~~ia~~al~~a~-l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
|.| ..+............+++.+.+- +.......-.+ |||+||.++|+|||+ .+|+++|| |||+.|
T Consensus 93 LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm-----~~PklLLL-DEPs~G 166 (237)
T COG0410 93 LTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM-----SRPKLLLL-DEPSEG 166 (237)
T ss_pred CcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh-----cCCCEEEe-cCCccC
Confidence 533 32222110111111233333331 22233444555 999999999999999 49999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHH----hCCCEEEEecCCC
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV----SGAPVMFVGCGQS 571 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~----~g~PI~fig~Gq~ 571 (589)
|-|.-..+.| ++++++.+.. +++++++.- ..-.++.+... .+--|++-|+++.
T Consensus 167 LaP~iv~~I~-~~i~~l~~~~---g~tIlLVEQ------n~~~Al~iaDr~yvle~Griv~~G~~~e 223 (237)
T COG0410 167 LAPKIVEEIF-EAIKELRKEG---GMTILLVEQ------NARFALEIADRGYVLENGRIVLSGTAAE 223 (237)
T ss_pred cCHHHHHHHH-HHHHHHHHcC---CcEEEEEec------cHHHHHHhhCEEEEEeCCEEEEecCHHH
Confidence 9999887777 8888888653 566666432 34455555432 1234444444444
No 59
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.8e-22 Score=200.76 Aligned_cols=161 Identities=21% Similarity=0.197 Sum_probs=119.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHAR 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~~ 435 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++++++|...+..
T Consensus 23 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 23 DVLHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 58999999999999 99999999999999999999999999999999987652 2677777643322
Q ss_pred c------cccceeccCCC-CCHHHHHHHHHHHhcccCCCccc-cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 436 R------LQVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 436 ~------l~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
. +.+.....+.. ......+.++++.+++....... ...||||+|++.|+++|+. +|+++|| ||||+
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~-----~p~lllL-DEPt~ 174 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN-----NPRLVLA-DEPTG 174 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCC
Confidence 2 21111101111 11234566778888776543333 4459999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+. .+.+.|.++... .+.+.|++|+
T Consensus 175 ~LD~~~~~-~l~~~l~~~~~~---~g~tvii~sH 204 (233)
T PRK11629 175 NLDARNAD-SIFQLLGELNRL---QGTAFLVVTH 204 (233)
T ss_pred CCCHHHHH-HHHHHHHHHHHh---CCCEEEEEeC
Confidence 99998764 444777776532 2567777777
No 60
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.9e-22 Score=213.61 Aligned_cols=162 Identities=19% Similarity=0.160 Sum_probs=125.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcccc-
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV- 439 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~v- 439 (589)
..+|++++|++.+|+ +++|+|||||||||||++|||+++|+.|+|.+.+.++. ++|+++|...+...+.+
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 17 TQVIKGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CEEEeeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 358999999999999 99999999999999999999999999999999998763 48999997654444322
Q ss_pred -----ceeccCCCC-CHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 440 -----PIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 440 -----~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.+...+... +....+.++++.+++.++....+.+ ||||+||++|||+|+. +|+++|| ||||++||+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~-----~P~llLL-DEP~s~LD~~ 168 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR-----EPAVFLF-DEPLSNLDAK 168 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHH
Confidence 221111111 1234567788888887665555555 9999999999999995 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+... .+.|..+... .+++.|++|+
T Consensus 169 ~r~~l-~~~l~~l~~~---~g~tii~vTH 193 (356)
T PRK11650 169 LRVQM-RLEIQRLHRR---LKTTSLYVTH 193 (356)
T ss_pred HHHHH-HHHHHHHHHh---cCCEEEEEeC
Confidence 87544 3666666543 3788888887
No 61
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=6.6e-23 Score=198.44 Aligned_cols=180 Identities=21% Similarity=0.276 Sum_probs=135.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------c----cchhhhhHhhhhccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------R----SGAVEQLRTHARRLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------R----igaveQL~~~~~~l~ 438 (589)
.++++||+.+.+|+ +++++|||||||||++.++.|+.+|++|+|.+.+.|+. | +||.+|.....+.+.
T Consensus 18 ~Vv~~Vsl~v~~GE--iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~Lt 95 (243)
T COG1137 18 KVVNDVSLEVNSGE--IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLT 95 (243)
T ss_pred eeeeeeeEEEcCCc--EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCc
Confidence 47899999999999 99999999999999999999999999999999999983 2 899999998888875
Q ss_pred cc----eeccCCCCC-----HHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 439 VP----IFEKGYEKD-----PAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 439 v~----l~~~~~~~d-----~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
|. .......++ ....+...++.+.+.+....+-.+ |||+++|++|||+|+ .+|.++|| |||++|
T Consensus 96 V~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa-----~~P~fiLL-DEPFAG 169 (243)
T COG1137 96 VEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA-----ANPKFILL-DEPFAG 169 (243)
T ss_pred HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh-----cCCCEEEe-cCCccC
Confidence 43 111111111 122355678888877776666655 999999999999999 59999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCC
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 571 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~ 571 (589)
.||... ..+++++..|... +|. |++|. ..+--.++++.. ...|..|+-
T Consensus 170 VDPiaV-~dIq~iI~~L~~r----giG-vLITD-----HNVREtL~i~dR----aYIi~~G~v 217 (243)
T COG1137 170 VDPIAV-IDIQRIIKHLKDR----GIG-VLITD-----HNVRETLDICDR----AYIISDGKV 217 (243)
T ss_pred CCchhH-HHHHHHHHHHHhC----Cce-EEEcc-----ccHHHHHhhhhe----EEEEecCeE
Confidence 999975 4455677666653 564 44443 344455666542 334455554
No 62
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.87 E-value=3.4e-22 Score=197.22 Aligned_cols=160 Identities=24% Similarity=0.280 Sum_probs=118.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc----CccchhhhhHhh--------hhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTH--------ARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt----~RigaveQL~~~--------~~~ 436 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++ .++++++|...+ .++
T Consensus 13 ~~l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 13 PVLEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred EeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 48999999999999 9999999999999999999999999999999998764 248888886432 222
Q ss_pred cccceeccC-----CCCCHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 437 LQVPIFEKG-----YEKDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 437 l~v~l~~~~-----~~~d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
+........ ........+.++++.+++..+. ..+-..||||+|++.|+++|+. +|+++|| ||||+|||
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~llll-DEPt~~LD 164 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQ-----DPDLLLL-DEPFAGVD 164 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccCC
Confidence 222111100 0111234556677777765433 3334559999999999999994 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+..+. .+.+.|.++... +.+.|++|+
T Consensus 165 ~~~~~-~l~~~l~~~~~~----~~tvi~~sH 190 (213)
T cd03235 165 PKTQE-DIYELLRELRRE----GMTILVVTH 190 (213)
T ss_pred HHHHH-HHHHHHHHHHhc----CCEEEEEeC
Confidence 98764 555777777542 567777776
No 63
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=3.8e-22 Score=196.44 Aligned_cols=160 Identities=22% Similarity=0.207 Sum_probs=116.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh-hhhccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-HARRLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~-~~~~l~ 438 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|... ....+.
T Consensus 15 ~il~~vs~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 15 PALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 48999999999999 99999999999999999999999999999999887642 3677777642 111111
Q ss_pred ----cceeccCCCCC---HHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 439 ----VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 439 ----v~l~~~~~~~d---~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
+.+....++.. ....+.++++.+++... +..+...||||+|++.|+++|+. +|+++|| ||||+|||
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~-----~p~llll-DEPt~~LD 166 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM-----DPDILLL-DEPTAGLD 166 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccCC
Confidence 11110111111 22345667777776543 33344559999999999999995 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+..+. .+.+.|.++... +.+.+++|+
T Consensus 167 ~~~~~-~~~~~l~~~~~~----~~tvi~~sH 192 (211)
T cd03225 167 PAGRR-ELLELLKKLKAE----GKTIIIVTH 192 (211)
T ss_pred HHHHH-HHHHHHHHHHHc----CCEEEEEeC
Confidence 99875 444777766542 567777776
No 64
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.87 E-value=4.8e-22 Score=196.12 Aligned_cols=160 Identities=21% Similarity=0.162 Sum_probs=118.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~~~ 436 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...
T Consensus 16 ~il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 16 AALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred eeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 58999999999999 99999999999999999999999999999999987652 25677776543322
Q ss_pred ccc----cee--ccCCC-CCHHHHHHHHHHHhcccCCCccc-cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 437 LQV----PIF--EKGYE-KDPAIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 437 l~v----~l~--~~~~~-~d~~~ia~~al~~a~l~~~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
+.+ .+. ..+.. ......+.++++.+++....... -..||||+|++.|+++|+. +|+++|| ||||+|
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~lllL-DEPt~~ 167 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN-----SPPLLLA-DEPTGN 167 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC-----CCCEEEE-eCCccc
Confidence 211 111 01111 11234556777777775443333 4459999999999999995 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+. .+.+.|.++... +.+.+++|+
T Consensus 168 LD~~~~~-~l~~~l~~~~~~----~~tii~~tH 195 (214)
T TIGR02673 168 LDPDLSE-RILDLLKRLNKR----GTTVIVATH 195 (214)
T ss_pred CCHHHHH-HHHHHHHHHHHc----CCEEEEEeC
Confidence 9999874 444777776542 567777776
No 65
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.87 E-value=3.2e-22 Score=198.36 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=118.6
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~ 434 (589)
..+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 18 ~~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 358999999999999 99999999999999999999999999999999987642 267777764333
Q ss_pred hcc------ccceeccCCC-CCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 435 RRL------QVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 435 ~~l------~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
..+ .+........ .+....+.++++.+++.......+ ..||||+|++.|+++|+. +|+++|| ||||
T Consensus 96 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~illl-DEPt 169 (221)
T TIGR02211 96 PDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN-----QPSLVLA-DEPT 169 (221)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC-----CCCEEEE-eCCC
Confidence 222 1111001111 112344566777777654333334 459999999999999995 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|||+..+. .+.+.|..+.... +.+.|++|+
T Consensus 170 ~~LD~~~~~-~l~~~l~~~~~~~---~~tii~~tH 200 (221)
T TIGR02211 170 GNLDNNNAK-IIFDLMLELNREL---NTSFLVVTH 200 (221)
T ss_pred CcCCHHHHH-HHHHHHHHHHHhc---CCEEEEEeC
Confidence 999999864 4557777765432 567777776
No 66
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=6.3e-22 Score=202.27 Aligned_cols=181 Identities=20% Similarity=0.220 Sum_probs=139.4
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccc---cc-------CccchhhhhHhhhhcc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC---DT-------FRSGAVEQLRTHARRL 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~---Dt-------~RigaveQL~~~~~~l 437 (589)
..++++|++.++.|+ ++++.|||||||||+|++|||+..|+.|+|.+.+. |+ .++|+++|...+...|
T Consensus 15 ~~a~~di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 15 FGALDDISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHM 92 (345)
T ss_pred ccccccceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccc
Confidence 356789999999999 99999999999999999999999999999999998 76 3599999987666666
Q ss_pred cc----ceec--cC---CCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 438 QV----PIFE--KG---YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 438 ~v----~l~~--~~---~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
.| .|-. +. ........+.+.++.+.+.++ +.++-+.||||+||++|||+|+ .+|+++|| |||+.
T Consensus 93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA-----~eP~vLLL-DEPf~ 166 (345)
T COG1118 93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA-----VEPKVLLL-DEPFG 166 (345)
T ss_pred hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh-----cCCCeEee-cCCch
Confidence 32 2211 11 112234566777888888886 5677788999999999999999 59999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCC
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq 570 (589)
+||+.-. +.+..-|.++.+.. +++.+++|+ |.-. ++...--|+.+..|.
T Consensus 167 ALDa~vr-~~lr~wLr~~~~~~---~~ttvfVTH-D~ee---------a~~ladrvvvl~~G~ 215 (345)
T COG1118 167 ALDAKVR-KELRRWLRKLHDRL---GVTTVFVTH-DQEE---------ALELADRVVVLNQGR 215 (345)
T ss_pred hhhHHHH-HHHHHHHHHHHHhh---CceEEEEeC-CHHH---------HHhhcceEEEecCCe
Confidence 9998754 55556666665543 889999998 4321 234455677777663
No 67
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.86 E-value=5.9e-22 Score=195.34 Aligned_cols=161 Identities=20% Similarity=0.160 Sum_probs=119.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV-- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~v-- 439 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|.+|+|.+.+.++. ++++++|...+...+.+
T Consensus 14 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 14 TALDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 48999999999999 99999999999999999999999999999999987752 37888886543322211
Q ss_pred --ceeccCCCCC---HHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 440 --PIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 440 --~l~~~~~~~d---~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
.+.....+.. ....+.++++.+++..+ +..+-+.||||+|++.|+++|.. +|+++|| ||||+|||+..
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~-----~p~llll-DEPt~~LD~~~ 165 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR-----EPKVFLM-DEPLSNLDAKL 165 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccCCHHH
Confidence 1111111111 22345566777766543 33444559999999999999995 9999998 99999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. .+.+.|.++.... +.+.+++|+
T Consensus 166 ~~-~l~~~l~~~~~~~---~~tvi~~sH 189 (213)
T cd03301 166 RV-QMRAELKRLQQRL---GTTTIYVTH 189 (213)
T ss_pred HH-HHHHHHHHHHHHc---CCEEEEEeC
Confidence 64 4447777765432 567777776
No 68
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.86 E-value=4.9e-22 Score=207.20 Aligned_cols=160 Identities=20% Similarity=0.223 Sum_probs=119.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc--------CccchhhhhHhhhhcccc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHARRLQV- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt--------~RigaveQL~~~~~~l~v- 439 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|++|+|.+.|.++ .++|+++|...+...+.+
T Consensus 18 ~~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 95 (303)
T TIGR01288 18 VVVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVR 95 (303)
T ss_pred EEEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHH
Confidence 58999999999999 9999999999999999999999999999999998775 237888886543322211
Q ss_pred ---ceeccCCCCCH---HHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 440 ---PIFEKGYEKDP---AIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 440 ---~l~~~~~~~d~---~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.++...++.+. ...+.++++.+++.......+ ..||||+||+.||++|+. +|+++|| ||||+|||+.
T Consensus 96 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~lllL-DEPt~gLD~~ 169 (303)
T TIGR01288 96 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN-----DPQLLIL-DEPTTGLDPH 169 (303)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCcCCCHH
Confidence 11111122221 234556777777765433344 459999999999999994 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+. .+.+.|.++... +.+.+++|+
T Consensus 170 ~~~-~l~~~l~~~~~~----g~til~~sH 193 (303)
T TIGR01288 170 ARH-LIWERLRSLLAR----GKTILLTTH 193 (303)
T ss_pred HHH-HHHHHHHHHHhC----CCEEEEECC
Confidence 864 555777777542 567777776
No 69
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=5.5e-22 Score=199.42 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=118.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhccc---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ--- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~--- 438 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. +++++.|...+...+.
T Consensus 16 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 16 VALDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred EeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence 58999999999999 99999999999999999999999999999999987652 3788888653332221
Q ss_pred -cceeccCCCC----C---HHHHHHHHHHHhcccCCCcc-ccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 439 -VPIFEKGYEK----D---PAIVAKEAIQEATRNGSDVV-LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 439 -v~l~~~~~~~----d---~~~ia~~al~~a~l~~~d~v-liDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
+.+....+.. + ....+.++++.+++..+... +...||||+|++.|+++|+. +|+++|| ||||+||
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~llll-DEP~~~L 167 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV-----EPKVLLL-DEPFGAL 167 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccC
Confidence 1111000110 1 12345667777777544333 34559999999999999995 9999998 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 510 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+..+. .+.+.|.++.... +.+.|++|+
T Consensus 168 D~~~~~-~l~~~l~~~~~~~---~~tvii~sH 195 (239)
T cd03296 168 DAKVRK-ELRRWLRRLHDEL---HVTTVFVTH 195 (239)
T ss_pred CHHHHH-HHHHHHHHHHHHc---CCEEEEEeC
Confidence 998764 4447777765432 567777776
No 70
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=6.6e-22 Score=210.48 Aligned_cols=161 Identities=22% Similarity=0.229 Sum_probs=124.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-------CccchhhhhHhhhhcc----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRL---- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-------~RigaveQL~~~~~~l---- 437 (589)
.+|++++|++.+|+ +++|+|||||||||||++|+|+++|+.|+|.+.+.++ .++|+++|...+...+
T Consensus 20 ~~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~e 97 (351)
T PRK11432 20 TVIDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGE 97 (351)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHH
Confidence 47999999999999 9999999999999999999999999999999999876 3489999976544433
Q ss_pred --ccceeccCCC-CCHHHHHHHHHHHhcccCCCccc-cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 438 --QVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 438 --~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
..++...+.. .+....+.++++.+++.++.... -..||||+||++|+|+|+. +|+++|| |||+++||+..
T Consensus 98 Ni~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~-----~P~lLLL-DEP~s~LD~~~ 171 (351)
T PRK11432 98 NVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL-----KPKVLLF-DEPLSNLDANL 171 (351)
T ss_pred HHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-cCCcccCCHHH
Confidence 2222111111 12234567788888887664444 4459999999999999995 9999998 99999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. .+...|..+... .+++.+++|+
T Consensus 172 r~-~l~~~l~~l~~~---~g~tii~vTH 195 (351)
T PRK11432 172 RR-SMREKIRELQQQ---FNITSLYVTH 195 (351)
T ss_pred HH-HHHHHHHHHHHh---cCCEEEEEcC
Confidence 75 444667666543 3778888887
No 71
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.86 E-value=7.6e-22 Score=194.50 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=117.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~~~ 436 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...
T Consensus 15 ~~l~~~sl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 15 AALDGINISISAGE--FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 48999999999999 99999999999999999999999999999999987653 26677775433222
Q ss_pred ------cccceeccCCCC-CHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 437 ------LQVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 437 ------l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
+........... .....+.++++.+++.......+ ..||||+|++.|+++|+. +|+++|| ||||+|
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEPt~~ 166 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN-----SPTILIA-DEPTGN 166 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc-----CCCEEEE-eCCCCc
Confidence 211111111111 12234566777777654433334 459999999999999995 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+. .+.+.|.++... +.+.|++|+
T Consensus 167 LD~~~~~-~~~~~l~~~~~~----~~tiiivtH 194 (214)
T cd03292 167 LDPDTTW-EIMNLLKKINKA----GTTVVVATH 194 (214)
T ss_pred CCHHHHH-HHHHHHHHHHHc----CCEEEEEeC
Confidence 9998864 444777776532 567777776
No 72
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.86 E-value=5.9e-22 Score=194.80 Aligned_cols=179 Identities=16% Similarity=0.163 Sum_probs=127.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV-- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~v-- 439 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|++|+|.+.+.++. ++++++|...+...+.+
T Consensus 14 ~~l~~~~~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 14 RVLDDISLHVKKGE--IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARE 91 (208)
T ss_pred EeEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHH
Confidence 58999999999999 99999999999999999999999999999999988753 37777776433222211
Q ss_pred --ceeccCCCCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 440 --PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 440 --~l~~~~~~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
.++...+.. ....+.++++.+++.......+ ..||||+|++.|+++|+. +|+++|| ||||+|||+..+.
T Consensus 92 ~l~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~llll-DEPt~~LD~~~~~- 163 (208)
T cd03268 92 NLRLLARLLGI-RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG-----NPDLLIL-DEPTNGLDPDGIK- 163 (208)
T ss_pred HHHHHHHhcCC-cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhc-----CCCEEEE-CCCcccCCHHHHH-
Confidence 111111111 2344567778777755433334 459999999999999994 9999988 9999999999864
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCC
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 571 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~ 571 (589)
.+.+.|..+... +.+.|++|+ |.- ......-.+.++..|+-
T Consensus 164 ~l~~~l~~~~~~----~~tii~~tH-~~~---------~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 164 ELRELILSLRDQ----GITVLISSH-LLS---------EIQKVADRIGIINKGKL 204 (208)
T ss_pred HHHHHHHHHHHC----CCEEEEEcC-CHH---------HHHHhcCEEEEEECCEE
Confidence 444777766542 567777776 321 11222335666666653
No 73
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=7.6e-22 Score=203.00 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=120.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc---------CccchhhhhH-------h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLR-------T 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt---------~RigaveQL~-------~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.++ .++|+++|.. +
T Consensus 19 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 19 KALKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred eeeeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 48999999999999 9999999999999999999999999999999999765 2378888864 1
Q ss_pred hhhccccceeccCCCC-CHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 433 HARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 433 ~~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
..+++.......+... .....+.++++.+++.++.. .+-+.||||+||+.|+++|+. +|+++|| ||||+|||
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~-----~p~llll-DEPt~~LD 170 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM-----DPDVIVL-DEPMAYLD 170 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-ECCCcCCC
Confidence 2222221111111111 12244567777777765433 444559999999999999994 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+..+. .+.+.|..+... +.+.+++|+
T Consensus 171 ~~~~~-~l~~~l~~~~~~----g~tili~tH 196 (274)
T PRK13647 171 PRGQE-TLMEILDRLHNQ----GKTVIVATH 196 (274)
T ss_pred HHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 99875 444777777542 677788876
No 74
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.86 E-value=6.6e-22 Score=211.18 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=122.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHAR 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~~ 435 (589)
.+|++++|++++|+ +++|+||||||||||+++|+|++.|++|+|.+.|.++. ++|+++|...+..
T Consensus 7 ~~l~~vs~~i~~Ge--i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 7 KGVNDADLAIAKGE--IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred eeEEeeEEEEcCCC--EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 47899999999999 99999999999999999999999999999999998763 3788888654433
Q ss_pred ccc----cceeccCCCCC---HHHHHHHHHHHhcccCCCccc-cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 436 RLQ----VPIFEKGYEKD---PAIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 436 ~l~----v~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
.+. +.+.....+.. ....+.++++.+++..+.... ...||||+||+.|||+|+. +|+++|| ||||+
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~-----~p~iLLl-DEP~s 158 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAA-----EPDILLM-DEAFS 158 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcc
Confidence 321 11111111212 235567788888887654444 4559999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+||+..+...+ +.+..+... .+.+.|++|+
T Consensus 159 aLD~~~r~~l~-~~l~~l~~~---~~~Tii~vTH 188 (363)
T TIGR01186 159 ALDPLIRDSMQ-DELKKLQAT---LQKTIVFITH 188 (363)
T ss_pred cCCHHHHHHHH-HHHHHHHHh---cCCEEEEEeC
Confidence 99999875444 666666543 2677788877
No 75
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.86 E-value=7.1e-22 Score=198.56 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=117.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhh--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHA-- 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~-- 434 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|++|+|.+.+.++. ++|+++|...+.
T Consensus 16 ~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 16 QALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred ceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 48999999999999 99999999999999999999999999999999987642 267777754322
Q ss_pred ----hccccceecc---------CCCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 435 ----RRLQVPIFEK---------GYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 435 ----~~l~v~l~~~---------~~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+++....... .........+.++++.+++... +..+...||||+|++.|+++|+. +|+++|
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~lll 168 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQ-----QPDLIL 168 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 2221111100 0111123445667777766543 33444559999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|.++.... +.+.|++|+
T Consensus 169 l-DEPt~~LD~~~~~-~l~~~l~~~~~~~---~~tiii~tH 204 (243)
T TIGR02315 169 A-DEPIASLDPKTSK-QVMDYLKRINKED---GITVIINLH 204 (243)
T ss_pred E-eCCcccCCHHHHH-HHHHHHHHHHHHc---CCEEEEEeC
Confidence 8 9999999998764 4457777765422 567777776
No 76
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.86 E-value=6.8e-22 Score=210.55 Aligned_cols=161 Identities=18% Similarity=0.191 Sum_probs=123.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcc----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL---- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l---- 437 (589)
.+|++++|++.+|+ +++|+|||||||||||++|+|+++|+.|+|.+.+.++. ++|+++|...+...+
T Consensus 16 ~~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 16 QVLNDISLDIPSGQ--MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFD 93 (353)
T ss_pred EEEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHH
Confidence 58999999999999 99999999999999999999999999999999998762 488999875443333
Q ss_pred --ccceecc-C-CCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 438 --QVPIFEK-G-YEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 438 --~v~l~~~-~-~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
..++... . ...+ ....+.++++.+++.++....+ ..||||+||++|+|+|+. +|+++|| ||||+||
T Consensus 94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~-----~P~llLL-DEP~s~L 167 (353)
T PRK10851 94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV-----EPQILLL-DEPFGAL 167 (353)
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCccC
Confidence 2221110 0 1112 2345677888888766544444 459999999999999995 9999998 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 510 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+..+. .+.+.|..+... .+++.+++|+
T Consensus 168 D~~~r~-~l~~~L~~l~~~---~g~tii~vTH 195 (353)
T PRK10851 168 DAQVRK-ELRRWLRQLHEE---LKFTSVFVTH 195 (353)
T ss_pred CHHHHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 998875 444677766543 3678888887
No 77
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.86 E-value=7.8e-22 Score=196.62 Aligned_cols=161 Identities=22% Similarity=0.186 Sum_probs=117.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHAR 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~~ 435 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+..
T Consensus 24 ~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 24 SILTGVELVVKRGE--TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEEeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 48999999999999 99999999999999999999999999999999887642 3677777653332
Q ss_pred cc------ccceeccCC-CCCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 436 RL------QVPIFEKGY-EKDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 436 ~l------~v~l~~~~~-~~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
.+ ......... .......+.++++.+++..... .+-..|||++|++.|+++|+. +|+++|| ||||+
T Consensus 102 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~-----~p~llll-DEPt~ 175 (228)
T PRK10584 102 TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG-----RPDVLFA-DEPTG 175 (228)
T ss_pred CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCC
Confidence 22 111111111 1112344566777777654433 344559999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+. .+.+.|.++.... +.+.|++|+
T Consensus 176 ~LD~~~~~-~l~~~l~~~~~~~---~~tii~~sH 205 (228)
T PRK10584 176 NLDRQTGD-KIADLLFSLNREH---GTTLILVTH 205 (228)
T ss_pred CCCHHHHH-HHHHHHHHHHHhc---CCEEEEEec
Confidence 99998764 5557777765432 566677766
No 78
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.86 E-value=1.2e-21 Score=192.05 Aligned_cols=160 Identities=23% Similarity=0.185 Sum_probs=118.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHAR 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~~ 435 (589)
.+|++++|.+.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. +++++.|...+..
T Consensus 12 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 12 IILDDLNLTIEKGK--MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEEeceEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 48999999999999 99999999999999999999999999999999987732 3667777654332
Q ss_pred cccc----ceeccCCCC---CHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 436 RLQV----PIFEKGYEK---DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 436 ~l~v----~l~~~~~~~---d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
.+.+ .+.....+. .....+.++++.+++..+ +..+...||||+|++.|+++|.. +|+++|| ||||+
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~-----~p~llll-DEPt~ 163 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK-----DPPLILA-DEPTG 163 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcC
Confidence 2211 111111111 122445667777776544 34445569999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+. .|.+.|..+... +.+.+++|+
T Consensus 164 ~LD~~~~~-~l~~~l~~~~~~----~~tii~~sh 192 (206)
T TIGR03608 164 SLDPKNRD-EVLDLLLELNDE----GKTIIIVTH 192 (206)
T ss_pred CCCHHHHH-HHHHHHHHHHhc----CCEEEEEeC
Confidence 99998864 555777776542 566677766
No 79
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=6.6e-22 Score=194.75 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=118.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-----CccchhhhhHhhhhcccc----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQV---- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-----~RigaveQL~~~~~~l~v---- 439 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++ .++++++|...+...+.+
T Consensus 14 ~~l~~v~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 14 TALDDISFSVEKGE--IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EEEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHH
Confidence 48999999999999 9999999999999999999999999999999998775 247888876533222211
Q ss_pred ceeccCCC---CCHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 440 PIFEKGYE---KDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 440 ~l~~~~~~---~d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
.+....++ ......+.++++.+++.... ..+...||||+|++.|+++|+. +|+++|| ||||+|||+..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~~lll-DEP~~~LD~~~~~ 165 (210)
T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIH-----DPELLIL-DEPFSGLDPVNVE 165 (210)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCcCCCHHHHH
Confidence 11111111 11234566677777765433 3334559999999999999995 9999988 9999999998764
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.+..+... +.+.+++|+
T Consensus 166 -~~~~~l~~~~~~----~~tii~~sH 186 (210)
T cd03269 166 -LLKDVIRELARA----GKTVILSTH 186 (210)
T ss_pred -HHHHHHHHHHHC----CCEEEEECC
Confidence 444777766532 556677776
No 80
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.86 E-value=9.9e-21 Score=180.94 Aligned_cols=173 Identities=46% Similarity=0.708 Sum_probs=145.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
|+++|+|++|+||||++..++..+...+.+|.+..+|++|.+..+|+..+++.++++++......++.....+.+..+..
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999998888888999999999999999999999999999887665566777666666666555
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
.+++++++||+|+.+.+..++..|..+.....|+.++||-+|.++.+...+...|.+. .+++++|+||+|
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~----------~~~~~viltk~D 150 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEA----------LGITGVILTKLD 150 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhh----------CCCCEEEEECCc
Confidence 6889999999999888888888888777777899999998898776665444333211 257999999999
Q ss_pred ccccchhhhhHhHHHhCCCEEEEe
Q 007789 544 TIDDKVGAALSMVYVSGAPVMFVG 567 (589)
Q Consensus 544 ~~d~k~G~als~~~~~g~PI~fig 567 (589)
++ .+.|.++++...++.||.|+|
T Consensus 151 ~~-~~~g~~~~~~~~~~~p~~~~~ 173 (173)
T cd03115 151 GD-ARGGAALSIRAVTGKPIKFIG 173 (173)
T ss_pred CC-CCcchhhhhHHHHCcCeEeeC
Confidence 97 899999999999999999987
No 81
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.86 E-value=7e-22 Score=210.49 Aligned_cols=162 Identities=23% Similarity=0.257 Sum_probs=125.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcc---
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL--- 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l--- 437 (589)
..+|++++|++.+|+ +++|+|||||||||||++|||+++|+.|+|.+.+.++. ++|+++|...+...+
T Consensus 17 ~~~l~~vs~~i~~Ge--~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 17 FTALKDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred eEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 357999999999999 99999999999999999999999999999999997763 388999876544433
Q ss_pred ---ccceeccCCC-CCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 438 ---QVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 438 ---~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
..++...... .+....+.++++.+++.++....+ ..||||+||++|+|+|+. +|+++|| |||+++||+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~-----~P~llLL-DEP~s~LD~~ 168 (353)
T TIGR03265 95 DNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT-----SPGLLLL-DEPLSALDAR 168 (353)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccCCHH
Confidence 2222111111 122356677888888876544444 459999999999999995 9999998 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+. .+.+.|..+... .+++.|++|+
T Consensus 169 ~r~-~l~~~L~~l~~~---~~~tvi~vTH 193 (353)
T TIGR03265 169 VRE-HLRTEIRQLQRR---LGVTTIMVTH 193 (353)
T ss_pred HHH-HHHHHHHHHHHh---cCCEEEEEcC
Confidence 764 444667666543 3788888887
No 82
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.1e-21 Score=203.23 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=120.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------ccchhhhhHh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRT----- 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------RigaveQL~~----- 432 (589)
.+|++|+|++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.++. ++|+++|...
T Consensus 21 ~~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 21 KALDNVNIEIEDGE--FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 58999999999999 99999999999999999999999999999999987652 3788888641
Q ss_pred --hhhccccceeccCCCCCH---HHHHHHHHHHhccc--C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 433 --HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN--G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 433 --~~~~l~v~l~~~~~~~d~---~~ia~~al~~a~l~--~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
..+++. +....++.+. ...+.++++.+++. . .+..+...||||+||+.||++|+. +|+++|| ||
T Consensus 99 ~tv~e~l~--~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~-----~P~llll-DE 170 (287)
T PRK13637 99 ETIEKDIA--FGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM-----EPKILIL-DE 170 (287)
T ss_pred ccHHHHHH--hHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-EC
Confidence 122221 1111112222 24566778887774 3 334445569999999999999994 9999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+|||+..+. .+.+.|.++... .+.+++++|+
T Consensus 171 Pt~gLD~~~~~-~l~~~l~~l~~~---~g~tvi~vtH 203 (287)
T PRK13637 171 PTAGLDPKGRD-EILNKIKELHKE---YNMTIILVSH 203 (287)
T ss_pred CccCCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 99999999875 444777777543 2677788877
No 83
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.1e-21 Score=196.93 Aligned_cols=182 Identities=19% Similarity=0.183 Sum_probs=127.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhh---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTH--- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~--- 433 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+
T Consensus 15 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 15 KALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred EEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 48999999999999 99999999999999999999999999999999987653 26677765432
Q ss_pred ---hhccccceecc--------C-CCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 434 ---ARRLQVPIFEK--------G-YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 434 ---~~~l~v~l~~~--------~-~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
.+++....... . ........+.++++.+++... +..+...||||+|++.|+++|+. +|+++|
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~lll 167 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ-----QPKLIL 167 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 22222111100 0 111123445667777776543 33444559999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
| ||||+|||+..+. .+.+.|.++.... +.+.|++|+ |.- ......--|..+..|+-+
T Consensus 168 l-DEPt~~LD~~~~~-~l~~~l~~~~~~~---~~tii~~tH-~~~---------~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 168 A-DEPVASLDPASSR-QVMDLLKRINREE---GITVIVSLH-QVD---------LAREYADRIVGLKDGRIV 224 (241)
T ss_pred E-eCccccCCHHHHH-HHHHHHHHHHHhc---CCEEEEEeC-CHH---------HHHHhCCEEEEEECCEEE
Confidence 8 9999999998764 4447777765432 567777776 321 112233456667777654
No 84
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.86 E-value=9.6e-22 Score=193.65 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=117.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------ccchhhhhHhhhhcc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTHARRL 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------RigaveQL~~~~~~l 437 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...+
T Consensus 14 ~~l~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 14 HVLKGIDLTVKKGE--VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred EeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 48999999999999 99999999999999999999999999999999987652 267777754332222
Q ss_pred c----cceecc-CCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 438 Q----VPIFEK-GYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 438 ~----v~l~~~-~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
. +.+... ..+.+ ....+.++++.+++.......+ ..||||+|++.|+++|+. +|+++|| ||||+|
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~llll-DEP~~~ 165 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM-----NPKVMLF-DEPTSA 165 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc-----CCCEEEE-eCCccC
Confidence 1 111000 01111 2234566777776654433344 459999999999999994 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+. .+.+.|.++... +.+.|++|+
T Consensus 166 LD~~~~~-~l~~~l~~~~~~----~~tvi~~sh 193 (213)
T cd03262 166 LDPELVG-EVLDVMKDLAEE----GMTMVVVTH 193 (213)
T ss_pred CCHHHHH-HHHHHHHHHHHc----CCEEEEEeC
Confidence 9998764 555778777642 566777776
No 85
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=9.4e-22 Score=208.70 Aligned_cols=162 Identities=19% Similarity=0.203 Sum_probs=120.8
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 435 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~~ 435 (589)
..+|++++|++++|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|...+..
T Consensus 18 ~~il~~vsl~i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 18 IHALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 458999999999999 99999999999999999999999999999999998753 3778877643322
Q ss_pred ------ccccceeccCCC-CCHHHHHHHHHHHhcccCCCcc-ccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 436 ------RLQVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVV-LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 436 ------~l~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~v-liDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
++.+.....+.. .+....+.++++.+++..+... +-..||||+||+.||++|+. +|+++|| ||||+
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~-----~p~iLlL-DEPts 169 (343)
T PRK11153 96 SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS-----NPKVLLC-DEATS 169 (343)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcc
Confidence 222211111111 1123456677887777654333 34559999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+. .+.+.|.++... .+.+.|++|+
T Consensus 170 ~LD~~~~~-~l~~~L~~l~~~---~g~tiilvtH 199 (343)
T PRK11153 170 ALDPATTR-SILELLKDINRE---LGLTIVLITH 199 (343)
T ss_pred cCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 99999864 444777776543 2667777776
No 86
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.86 E-value=9.3e-22 Score=194.61 Aligned_cols=160 Identities=20% Similarity=0.184 Sum_probs=119.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhcccc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQV- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~v- 439 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++|++|+|.+.+.++. ++++++|...+...+.+
T Consensus 19 ~il~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 58999999999999 99999999999999999999999999999999887652 36777776543332211
Q ss_pred ---ceeccCCCC---CHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 440 ---PIFEKGYEK---DPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 440 ---~l~~~~~~~---d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.+....++. +....+.++++.+++.......+ ..||||+|++.|+++|+. +|+++|| ||||+|||+.
T Consensus 97 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~illl-DEPt~~LD~~ 170 (218)
T cd03266 97 ENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH-----DPPVLLL-DEPTTGLDVM 170 (218)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc-----CCCEEEE-cCCCcCCCHH
Confidence 111111111 12345667788777755433444 459999999999999994 9999998 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+ ..+.+.|..+... +.+.|++|+
T Consensus 171 ~~-~~l~~~l~~~~~~----~~tii~~tH 194 (218)
T cd03266 171 AT-RALREFIRQLRAL----GKCILFSTH 194 (218)
T ss_pred HH-HHHHHHHHHHHHC----CCEEEEEeC
Confidence 76 4555777777542 567777776
No 87
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=202.58 Aligned_cols=161 Identities=20% Similarity=0.212 Sum_probs=120.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhH----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR---- 431 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~---- 431 (589)
.+|++|+|++.+|+ +++|+|+||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|..
T Consensus 21 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 21 QAIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred CceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence 48999999999999 99999999999999999999999999999999987652 378888853
Q ss_pred ---hhhhccccceeccCCCC-CHHHHHHHHHHHhccc-CCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 432 ---THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRN-GSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 432 ---~~~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~-~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+..+++.+.....+... .....+.++++.+++. ... ..+-..||||+|++.|+++|+. +|+++|| |||
T Consensus 99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~-----~p~illl-DEP 172 (286)
T PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAM-----NPDIIVL-DEP 172 (286)
T ss_pred chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHh-----CCCEEEE-ECC
Confidence 22333322111111111 1234566777777775 333 3444559999999999999995 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+|||+..+. .+.+.+.++... .+.+.+++|+
T Consensus 173 t~~LD~~~~~-~l~~~l~~l~~~---~g~tvl~vtH 204 (286)
T PRK13646 173 TAGLDPQSKR-QVMRLLKSLQTD---ENKTIILVSH 204 (286)
T ss_pred cccCCHHHHH-HHHHHHHHHHHh---CCCEEEEEec
Confidence 9999999875 444777777543 2678888877
No 88
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.86 E-value=1.3e-21 Score=195.80 Aligned_cols=181 Identities=20% Similarity=0.218 Sum_probs=127.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhcc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~l- 437 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++++++|...+...+
T Consensus 14 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 14 VALDDVSFSVRPGE--IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred EEecCceEEecCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 48999999999999 99999999999999999999999999999999987642 267777764332222
Q ss_pred -----ccceeccCC-----------CCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 438 -----QVPIFEKGY-----------EKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 438 -----~v~l~~~~~-----------~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
......... .......+.++++.+++.......+ ..||||+|++.|+++|.. +|+++|
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~lll 166 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT-----DPKLLL 166 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 111110000 0112234566777777765433344 459999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
| ||||+|||+..+. .+.+.|.++... +.+.|++|+ |. .......--|.++..|+-+
T Consensus 167 l-DEPt~~LD~~~~~-~l~~~l~~~~~~----~~tii~vsH-~~---------~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 167 L-DEPAAGLNPEETE-ELAELIRELRER----GITVLLVEH-DM---------DVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred E-cCCcccCCHHHHH-HHHHHHHHHHHC----CCEEEEEec-CH---------HHHHHhCCEEEEEeCCEEE
Confidence 8 9999999998764 444777776542 567777776 22 1112223456677777654
No 89
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.85 E-value=1.1e-21 Score=211.90 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=122.8
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc-
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l- 437 (589)
..+|++++|.+.+|+ +++|+||||+||||||++|+|+++|.+|+|.+.+.++. ++|++.|.......+
T Consensus 16 ~~vL~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 16 TTVLDGVDLSVREGS--LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred EEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC
Confidence 358999999999999 99999999999999999999999999999999998763 378888765332222
Q ss_pred -----ccceec--cCC---CCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 438 -----QVPIFE--KGY---EKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 438 -----~v~l~~--~~~---~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
.+..+. ... .......+.++++.+++..+....+.. ||||+||+.||++|++ +|+++|| ||||
T Consensus 94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~-----~P~iLLL-DEPt 167 (402)
T PRK09536 94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ-----ATPVLLL-DEPT 167 (402)
T ss_pred HHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-ECCc
Confidence 111110 011 122345677888888887665555555 9999999999999995 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|||+..+...+ +.|.++... +.+.|++|+
T Consensus 168 sgLD~~~~~~l~-~lL~~l~~~----g~TIIivsH 197 (402)
T PRK09536 168 ASLDINHQVRTL-ELVRRLVDD----GKTAVAAIH 197 (402)
T ss_pred ccCCHHHHHHHH-HHHHHHHhc----CCEEEEEEC
Confidence 999999875444 777777642 566666665
No 90
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.85 E-value=3.4e-22 Score=208.26 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=121.7
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc-
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 438 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~- 438 (589)
..+|++++|.+++|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+...+.
T Consensus 15 ~~~l~~is~~i~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 15 QNALDEVSFEAQKGR--IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred EEEEEEeEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 358999999999999 99999999999999999999999999999999997753 3788888765444332
Q ss_pred ---cceeccCCCCC---HHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 439 ---VPIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 439 ---v~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+.++...++.. ....+.++++.+++.......+. .||||+|++.|+++|+ .+|+++|| ||||+|||+
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~lliL-DEPt~gLD~ 166 (301)
T TIGR03522 93 REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALI-----HDPKVLIL-DEPTTGLDP 166 (301)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCH
Confidence 12222222222 23456778888877665444444 4999999999999999 49999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+. .+.+.+..+.. +.+.+++|+
T Consensus 167 ~~~~-~l~~~l~~~~~-----~~tiii~sH 190 (301)
T TIGR03522 167 NQLV-EIRNVIKNIGK-----DKTIILSTH 190 (301)
T ss_pred HHHH-HHHHHHHHhcC-----CCEEEEEcC
Confidence 9874 55577777643 355566665
No 91
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.3e-21 Score=202.87 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=120.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhH----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR---- 431 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~---- 431 (589)
.+|++|+|++.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.+.++. ++|+++|..
T Consensus 21 ~~L~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 21 RALYDVNVSIPSGS--YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred cceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 48999999999999 99999999999999999999999999999999997652 378888853
Q ss_pred ---hhhhccccceeccCCCC-CHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 432 ---THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 432 ---~~~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+..+++.+.....+... +....+.++++.+++. .. +..+-..||||+|++.||++|+. +|+++|| |||
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~-----~P~llll-DEP 172 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM-----EPEVLVL-DEP 172 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-ECC
Confidence 22222221111111111 1224567788888875 43 34444559999999999999994 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+|||+..+. .+.+.|..+.... +.++|++|+
T Consensus 173 t~~LD~~~~~-~l~~~L~~l~~~~---g~tviiitH 204 (290)
T PRK13634 173 TAGLDPKGRK-EMMEMFYKLHKEK---GLTTVLVTH 204 (290)
T ss_pred cccCCHHHHH-HHHHHHHHHHHhc---CCEEEEEeC
Confidence 9999999875 4447777775432 677788776
No 92
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.85 E-value=1.3e-21 Score=193.77 Aligned_cols=180 Identities=14% Similarity=0.104 Sum_probs=126.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~-- 438 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 16 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 16 PAVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred eeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 48999999999999 99999999999999999999999999999999987752 3678887543322221
Q ss_pred --cceeccCCCCC---HHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 439 --VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 439 --v~l~~~~~~~d---~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
+.+....++.. ....+.++++.+++... +..+...||||+|++.|+++|+. +|+++|| ||||+|||+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~llll-DEP~~~LD~~ 167 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG-----GPSVLLL-DEPTSGLDPA 167 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc-----CCCEEEE-CCCCCCCCHH
Confidence 11111111111 22445667777776543 33344559999999999999995 9999998 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
.+. .+.+.|..+.. +.+.+++|+ |.. ......--|.++..|+-+
T Consensus 168 ~~~-~l~~~l~~~~~-----~~tii~~sH-~~~---------~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 168 SRR-AIWDLILEVRK-----GRSIILTTH-SMD---------EAEALCDRIAIMSDGKLR 211 (220)
T ss_pred HHH-HHHHHHHHHhc-----CCEEEEEcC-CHH---------HHHHhcCEEEEEECCEEE
Confidence 764 44477776653 356666666 321 111222356677777654
No 93
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-21 Score=209.96 Aligned_cols=161 Identities=19% Similarity=0.147 Sum_probs=121.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcc----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL---- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l---- 437 (589)
.+|++++|++.+|+ +++|+|||||||||||++|+|+++|+.|+|.+.+.++. ++|+++|...+...+
T Consensus 17 ~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 17 VISKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH
Confidence 48999999999999 99999999999999999999999999999999987752 378888865443332
Q ss_pred --ccceeccCCC-CCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 438 --QVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 438 --~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
...+...+.. .+....+.++++.+++..+....+ ..||||+||+.||++|+. +|+++|| ||||+|||+..
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~-----~P~lLLL-DEPts~LD~~~ 168 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA-----EPSVFLL-DEPLSNLDAAL 168 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHHH
Confidence 2221111111 112345677788887765444444 459999999999999995 9999998 99999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. .+.+.|.++... .+.+.|++|+
T Consensus 169 ~~-~l~~~L~~l~~~---~g~tvI~vTH 192 (369)
T PRK11000 169 RV-QMRIEISRLHKR---LGRTMIYVTH 192 (369)
T ss_pred HH-HHHHHHHHHHHH---hCCEEEEEeC
Confidence 64 444667666543 2667788876
No 94
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.85 E-value=1.4e-21 Score=191.13 Aligned_cols=159 Identities=14% Similarity=0.059 Sum_probs=116.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~-- 438 (589)
.+|++++|.+.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 14 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 14 MLFEGLSFTLNAGE--ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91 (198)
T ss_pred EEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHH
Confidence 48999999999999 99999999999999999999999999999999987752 3566666432211111
Q ss_pred --cceeccCCCCCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 439 --VPIFEKGYEKDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 439 --v~l~~~~~~~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
+.++......+ ...+.++++.+++..+.. .+-+.||||+|++.|+++|.. +|+++|| ||||+|||+..+
T Consensus 92 ~~l~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~llll-DEPt~~LD~~~~- 163 (198)
T TIGR01189 92 ENLHFWAAIHGGA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS-----RAPLWIL-DEPTTALDKAGV- 163 (198)
T ss_pred HHHHHHHHHcCCc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCcCCCHHHH-
Confidence 11111111111 234566777777755433 334459999999999999995 9999998 999999999875
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+.+.|.++... +.+.|++|+
T Consensus 164 ~~l~~~l~~~~~~----~~tii~~sH 185 (198)
T TIGR01189 164 ALLAGLLRAHLAR----GGIVLLTTH 185 (198)
T ss_pred HHHHHHHHHHHhC----CCEEEEEEc
Confidence 5566777776543 557777777
No 95
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.85 E-value=1.5e-21 Score=195.89 Aligned_cols=161 Identities=21% Similarity=0.204 Sum_probs=117.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~-- 438 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|++|+|.+.+.++. ++++++|...+...+.
T Consensus 15 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 15 RALDDVSFTVRPGE--FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVR 92 (236)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHH
Confidence 48999999999999 99999999999999999999999999999999987652 3677777643322211
Q ss_pred --cceeccCCCCC---HHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 439 --VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 439 --v~l~~~~~~~d---~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
+.+....++.. ....+.++++.+++... +..+...||||+|++.|+++|+. +|+++|| ||||+|||+.
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~-----~p~llll-DEP~~~LD~~ 166 (236)
T TIGR03864 93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLH-----RPALLLL-DEPTVGLDPA 166 (236)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCccCCCHH
Confidence 11111111111 22345566776666543 33444559999999999999995 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+. .+.+.|..+... .+.+.+++|+
T Consensus 167 ~~~-~l~~~l~~~~~~---~~~tiii~sH 191 (236)
T TIGR03864 167 SRA-AIVAHVRALCRD---QGLSVLWATH 191 (236)
T ss_pred HHH-HHHHHHHHHHHh---CCCEEEEEec
Confidence 875 444777776532 2566777775
No 96
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.3e-21 Score=201.79 Aligned_cols=162 Identities=18% Similarity=0.145 Sum_probs=120.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh-------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT------- 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~------- 432 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. ++|+++|...
T Consensus 21 ~~l~~vsl~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 21 YALKDVSFSVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 48999999999999 99999999999999999999999999999999998752 3778887541
Q ss_pred hhhccccceeccCCC-CCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 433 HARRLQVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 433 ~~~~l~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
..+++.......+.. .+....+.++++.+++..+....+. .||||+|++.|+++|+. +|+++|| ||||+|||
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lllL-DEPt~gLD 172 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL-----QPDIIIL-DEATSMLD 172 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccCC
Confidence 222222111111111 1112345667777777654444444 49999999999999994 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
+..+. .+.+.|..+... .+.+.+++|+-
T Consensus 173 ~~~~~-~l~~~l~~l~~~---~~~tilivsH~ 200 (279)
T PRK13635 173 PRGRR-EVLETVRQLKEQ---KGITVLSITHD 200 (279)
T ss_pred HHHHH-HHHHHHHHHHHc---CCCEEEEEecC
Confidence 99875 444777777643 26777888773
No 97
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.85 E-value=1.5e-21 Score=209.48 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=124.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcc----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL---- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l---- 437 (589)
.+|++++|++..|+ +++|+|||||||||||++|||+++|+.|+|.+.+.++. ++|+++|...+...+
T Consensus 28 ~~l~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e 105 (375)
T PRK09452 28 EVISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE 105 (375)
T ss_pred EEEeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHH
Confidence 47899999999999 99999999999999999999999999999999998763 388999876544433
Q ss_pred --ccceeccCCCC-CHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 438 --QVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 438 --~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
...+...+... +....+.++++.+++.++....+.+ ||||+||++|+|+|+. +|+++|| |||+++||+..
T Consensus 106 Ni~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~-----~P~llLL-DEP~s~LD~~~ 179 (375)
T PRK09452 106 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN-----KPKVLLL-DESLSALDYKL 179 (375)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCCcCCHHH
Confidence 22221111111 1134566778888887655555554 9999999999999995 9999998 99999999987
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. .+.+.|..+... .+++.|++|+
T Consensus 180 r~-~l~~~L~~l~~~---~g~tiI~vTH 203 (375)
T PRK09452 180 RK-QMQNELKALQRK---LGITFVFVTH 203 (375)
T ss_pred HH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 64 455777766653 2778888887
No 98
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.6e-21 Score=201.02 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=121.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh--h----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT--H---- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~--~---- 433 (589)
.+|++++|++.+|+ +++|+|+||||||||++.|+|+++|+.|+|.+.+.++. ++|+++|... +
T Consensus 21 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 21 YTLNDVSFHVKQGE--WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred eeeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence 48999999999999 99999999999999999999999999999999997762 3788888642 1
Q ss_pred -hhccccceeccCCCCCH---HHHHHHHHHHhcccCCCccc-cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 434 -ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 434 -~~~l~v~l~~~~~~~d~---~~ia~~al~~a~l~~~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
.+++.... ...+.++ ...+.++++.+++.++.... ...||||+|++.|+++|+. +|+++|| ||||+|
T Consensus 99 v~eni~~~~--~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~-----~p~lLlL-DEPt~~ 170 (279)
T PRK13650 99 VEDDVAFGL--ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM-----RPKIIIL-DEATSM 170 (279)
T ss_pred HHHHHHhhH--HhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-ECCccc
Confidence 22222111 1112222 34567788888877654444 4559999999999999995 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+. .|.+.|..+.... +.+.+++|+
T Consensus 171 LD~~~~~-~l~~~l~~l~~~~---g~tilivtH 199 (279)
T PRK13650 171 LDPEGRL-ELIKTIKGIRDDY---QMTVISITH 199 (279)
T ss_pred CCHHHHH-HHHHHHHHHHHhc---CCEEEEEec
Confidence 9998764 4447777776432 677788876
No 99
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.1e-21 Score=199.75 Aligned_cols=161 Identities=21% Similarity=0.261 Sum_probs=118.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----ccchhhhhHhhhh------ccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----RSGAVEQLRTHAR------RLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----RigaveQL~~~~~------~l~ 438 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|++.|...+.. ++.
T Consensus 15 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 92 (255)
T PRK11248 15 PALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVA 92 (255)
T ss_pred eeEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHH
Confidence 48999999999999 99999999999999999999999999999999987753 3678888643322 221
Q ss_pred cceeccCCC-CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 439 VPIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 439 v~l~~~~~~-~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
......+.. .+....+.++++.+++... +..+-..||||+|++.|+++|+. +|+++|| ||||+|||+..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~-----~p~lllL-DEPt~~LD~~~~~- 165 (255)
T PRK11248 93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAA-----NPQLLLL-DEPFGALDAFTRE- 165 (255)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCccCCHHHHH-
Confidence 111101111 1122345667777776543 33344559999999999999994 9999998 9999999998864
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.|..+... .+.+.|++|+
T Consensus 166 ~l~~~L~~~~~~---~g~tviivsH 187 (255)
T PRK11248 166 QMQTLLLKLWQE---TGKQVLLITH 187 (255)
T ss_pred HHHHHHHHHHHh---cCCEEEEEeC
Confidence 455777766432 1567777776
No 100
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.7e-21 Score=194.91 Aligned_cols=161 Identities=19% Similarity=0.154 Sum_probs=118.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~~~ 436 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|++|+|.+.+.++. ++++++|...+...
T Consensus 19 ~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 58999999999999 99999999999999999999999999999999987752 25666665433222
Q ss_pred ccc----ceeccCCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 437 LQV----PIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 437 l~v----~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
+.+ .+.....+.. ....+.++++.+++.......+ ..||||+|++.|+++|+. +|+++|| ||||+|
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~lllL-DEP~~~ 170 (233)
T cd03258 97 RTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN-----NPKVLLC-DEATSA 170 (233)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc-----CCCEEEe-cCCCCc
Confidence 211 1100011111 2234567777777765433334 459999999999999995 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+. .|.+.|.++.... +.+.|++|+
T Consensus 171 LD~~~~~-~l~~~l~~~~~~~---~~tvii~sH 199 (233)
T cd03258 171 LDPETTQ-SILALLRDINREL---GLTIVLITH 199 (233)
T ss_pred CCHHHHH-HHHHHHHHHHHHc---CCEEEEEeC
Confidence 9999864 4447777765432 566777776
No 101
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.85 E-value=2e-21 Score=194.07 Aligned_cols=181 Identities=17% Similarity=0.186 Sum_probs=126.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~l~ 438 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++++++|...+...+.
T Consensus 14 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 14 KVVNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred EeeccceeEecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 48999999999999 99999999999999999999999999999999886541 2677777653332221
Q ss_pred c----ceeccCCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 439 V----PIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 439 v----~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
+ .+....++.. ....+.++++.+++.......+ ..||||+|++.|+++|+. +|+++|| ||||+|||
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~llll-DEPt~~LD 165 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT-----NPKFLLL-DEPFAGVD 165 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEe-cCCcccCC
Confidence 1 1111111111 1234556777776654433344 459999999999999995 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
+..+. .+.+.|..+... +.+.|++|+ |.- ......--|.++..|+-+
T Consensus 166 ~~~~~-~~~~~l~~~~~~----~~tii~~sH-~~~---------~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 166 PIAVQ-DIQKIIKILKDR----GIGVLITDH-NVR---------ETLSITDRAYIIYEGKVL 212 (232)
T ss_pred HHHHH-HHHHHHHHHHHC----CCEEEEEeC-CHH---------HHHHhCCEEEEEECCeEE
Confidence 99864 444777776542 566677766 321 112223356666666654
No 102
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=1.7e-21 Score=194.53 Aligned_cols=183 Identities=20% Similarity=0.144 Sum_probs=126.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~l~ 438 (589)
.+|++++|++.+|+ +++|+|+||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 14 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 14 HILRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred EEecceeeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 48999999999999 99999999999999999999999999999999987652 3677777653322221
Q ss_pred c----ceeccCCCCCHHHHHHHHHHHhc-ccC-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 439 V----PIFEKGYEKDPAIVAKEAIQEAT-RNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 439 v----~l~~~~~~~d~~~ia~~al~~a~-l~~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
+ .+....++......+.++++.++ +.. .+..+-..||||+|++.|+++|.. +|+++|| ||||+|||+.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~illl-DEPt~~LD~~ 165 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT-----RPKLLLL-DEPTEGIQPS 165 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEe-cCCcccCCHH
Confidence 1 11111112222334455666554 233 234444559999999999999995 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
.+. .+.+.|.++.... +.+.|++|+ |.- ......--|..+..|+-+.
T Consensus 166 ~~~-~l~~~l~~~~~~~---~~tii~~sH-~~~---------~~~~~~d~v~~l~~g~i~~ 212 (230)
T TIGR03410 166 IIK-DIGRVIRRLRAEG---GMAILLVEQ-YLD---------FARELADRYYVMERGRVVA 212 (230)
T ss_pred HHH-HHHHHHHHHHHcC---CcEEEEEeC-CHH---------HHHHhCCEEEEEECCEEEE
Confidence 874 4557777665432 567777776 221 1111223566677776553
No 103
>PRK10908 cell division protein FtsE; Provisional
Probab=99.85 E-value=2.1e-21 Score=192.99 Aligned_cols=160 Identities=15% Similarity=0.085 Sum_probs=116.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~~~ 436 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...
T Consensus 16 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 16 QALQGVTFHMRPGE--MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred eEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 58999999999999 99999999999999999999999999999999987652 25677775432221
Q ss_pred cc----cceeccCCCCCH---HHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 437 LQ----VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 437 l~----v~l~~~~~~~d~---~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
+. +.+.....+... ...+.++++.+++... +..+...||||+|++.|+++|.. +|+++|| ||||+|
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEPt~~ 167 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN-----KPAVLLA-DEPTGN 167 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCCCc
Confidence 11 111100111122 2334567777766543 33344559999999999999994 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+. .+.+.|.++... +.+.+++|+
T Consensus 168 LD~~~~~-~l~~~l~~~~~~----~~tiii~sH 195 (222)
T PRK10908 168 LDDALSE-GILRLFEEFNRV----GVTVLMATH 195 (222)
T ss_pred CCHHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 9998764 444777777542 566777776
No 104
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.8e-21 Score=201.52 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=118.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhH--hh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR--TH 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~--~~ 433 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. ++|+++|.. .+
T Consensus 21 ~~l~~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 98 (287)
T PRK13641 21 KGLDNISFELEEGS--FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL 98 (287)
T ss_pred cceeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence 48999999999999 99999999999999999999999999999999997652 367887754 11
Q ss_pred -----hhccccceeccCCC-CCHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 434 -----ARRLQVPIFEKGYE-KDPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 434 -----~~~l~v~l~~~~~~-~d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
.+++.......... .+....+.++++.+++. .+ +..+-..||||+||+.|+++|+. +|+++|| |||
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~-----~p~lLlL-DEP 172 (287)
T PRK13641 99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAY-----EPEILCL-DEP 172 (287)
T ss_pred ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-ECC
Confidence 22222111111111 11223456777777775 34 33444559999999999999994 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+|||+..+. .+.+.|..+... +.+.+++|+
T Consensus 173 t~gLD~~~~~-~l~~~l~~l~~~----g~tvlivsH 203 (287)
T PRK13641 173 AAGLDPEGRK-EMMQLFKDYQKA----GHTVILVTH 203 (287)
T ss_pred CCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEeC
Confidence 9999999864 455777776532 677777776
No 105
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.85 E-value=2.2e-21 Score=190.44 Aligned_cols=158 Identities=17% Similarity=0.106 Sum_probs=117.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhcccc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQV- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~v- 439 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++|++|+|.+.+.++. ++++++|...+...+.+
T Consensus 14 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (201)
T cd03231 14 ALFSGLSFTLAAGE--ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVL 91 (201)
T ss_pred eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHH
Confidence 47999999999999 99999999999999999999999999999999987752 35666664322221111
Q ss_pred ---ceeccCCCCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 440 ---PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 440 ---~l~~~~~~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
.++.. ......+.++++.+++.++....+ ..||||+|++.|+++|+. +|+++|| ||||+|||+..+.
T Consensus 92 e~l~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-----~p~llll-DEPt~~LD~~~~~ 162 (201)
T cd03231 92 ENLRFWHA---DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS-----GRPLWIL-DEPTTALDKAGVA 162 (201)
T ss_pred HHHHhhcc---cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCCCCCHHHHH
Confidence 11111 112345567778777765444444 459999999999999995 9999998 9999999998764
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
.+.+.|.++... +.+.|++|+-
T Consensus 163 -~l~~~l~~~~~~----g~tiii~sH~ 184 (201)
T cd03231 163 -RFAEAMAGHCAR----GGMVVLTTHQ 184 (201)
T ss_pred -HHHHHHHHHHhC----CCEEEEEecC
Confidence 555777666542 5677888773
No 106
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.9e-21 Score=199.38 Aligned_cols=162 Identities=22% Similarity=0.235 Sum_probs=119.0
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~ 434 (589)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 37 ~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 114 (269)
T cd03294 37 TVGVNDVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114 (269)
T ss_pred ceEeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccC
Confidence 357999999999999 99999999999999999999999999999999886642 367777764332
Q ss_pred hcc------ccceeccCCC-CCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 435 RRL------QVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 435 ~~l------~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
..+ .+.....+.. ......+.++++.+++..+....+ ..||||+|++.||++|+. +|+++|| ||||
T Consensus 115 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~-----~p~illL-DEPt 188 (269)
T cd03294 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAV-----DPDILLM-DEAF 188 (269)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCC
Confidence 222 1111001111 112234566777777765434444 459999999999999994 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|||+..+. .+.+.|.++.... +.+.|++|+
T Consensus 189 ~~LD~~~~~-~l~~~l~~~~~~~---g~tiii~tH 219 (269)
T cd03294 189 SALDPLIRR-EMQDELLRLQAEL---QKTIVFITH 219 (269)
T ss_pred ccCCHHHHH-HHHHHHHHHHHhc---CCEEEEEeC
Confidence 999999864 4447777765432 567777776
No 107
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.85 E-value=1.8e-21 Score=198.78 Aligned_cols=161 Identities=19% Similarity=0.151 Sum_probs=118.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc----CccchhhhhHhhhhccccc-eec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHARRLQVP-IFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt----~RigaveQL~~~~~~l~v~-l~~ 443 (589)
.+|++++|.+.+|+ +++|+||||||||||++.|+|+++|++|+|.+.+.++ .++++++|...+...+.+. ...
T Consensus 26 ~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 103 (257)
T PRK11247 26 TVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVG 103 (257)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHH
Confidence 48999999999999 9999999999999999999999999999999987664 2478888865433322111 000
Q ss_pred cCCCCCHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHH
Q 007789 444 KGYEKDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 522 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l 522 (589)
..........+.++++.+++.... ..+-..||||+|++.|+++|.. +|+++|| ||||+|||+..+. .+.+.|
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~-----~p~lllL-DEPt~~LD~~~~~-~l~~~L 176 (257)
T PRK11247 104 LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH-----RPGLLLL-DEPLGALDALTRI-EMQDLI 176 (257)
T ss_pred hcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCCCCCHHHHH-HHHHHH
Confidence 000111234566778887776543 3344559999999999999995 9999998 9999999999864 444677
Q ss_pred HHhhcCCCCCCccEEEEcc
Q 007789 523 ADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 523 ~~l~~~~~~~~it~IIlTK 541 (589)
..+.... +.+.|++|+
T Consensus 177 ~~~~~~~---~~tviivsH 192 (257)
T PRK11247 177 ESLWQQH---GFTVLLVTH 192 (257)
T ss_pred HHHHHHc---CCEEEEEeC
Confidence 6664322 567777776
No 108
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.9e-21 Score=187.71 Aligned_cols=158 Identities=20% Similarity=0.181 Sum_probs=119.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc--Ccc-------chhhhhHhh------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--FRS-------GAVEQLRTH------ 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt--~Ri-------gaveQL~~~------ 433 (589)
.+|+++++.+.+|+ +.+|+||||+||||||+.|+|.+.|++|+|.+.+.+. +.+ +.+.|...+
T Consensus 15 ~ll~~vsl~~~pGe--v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 15 RLLDGVSLDLRPGE--VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred eeccCcceeccCCc--EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence 57899999999999 9999999999999999999999999999999999876 322 222332211
Q ss_pred hhccccceeccCCCC---CHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 434 ARRLQVPIFEKGYEK---DPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 434 ~~~l~v~l~~~~~~~---d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
.+.+.+.....+.+. +...++..++...+..++.-..+-+ |||+|||+.|+|.|+++.....-.-+||+||||+.|
T Consensus 93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL 172 (259)
T COG4559 93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL 172 (259)
T ss_pred HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc
Confidence 111111111111122 3456788899999888888777776 999999999999999977654333355569999999
Q ss_pred CHHHHHHHHHHHHHHhhcCC
Q 007789 510 DAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~ 529 (589)
|..+|...+ +..++++..+
T Consensus 173 Di~HQ~~tl-~laR~la~~g 191 (259)
T COG4559 173 DIAHQHHTL-RLARQLAREG 191 (259)
T ss_pred chHHHHHHH-HHHHHHHhcC
Confidence 999998887 7778887764
No 109
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.5e-21 Score=200.09 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=117.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------ccchhhhhHh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRT----- 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------RigaveQL~~----- 432 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|++|+|.+.+.++. +++++.|...
T Consensus 15 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 15 PVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 48999999999999 99999999999999999999999999999999987741 3678887542
Q ss_pred --hhhccccceeccCCCCCH---HHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 433 --HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 433 --~~~~l~v~l~~~~~~~d~---~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
..+++... ....+... ...+.++++.+++.++....+ ..||||+|++.|+++|+. +|+++|| ||||
T Consensus 93 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~-----~p~lllL-DEPt 164 (271)
T PRK13638 93 TDIDSDIAFS--LRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL-----QARYLLL-DEPT 164 (271)
T ss_pred ccHHHHHHHH--HHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCc
Confidence 11121111 11112122 234556777777665544444 459999999999999994 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|||+..+. .+.+.|.++... +.+.|++|+
T Consensus 165 ~~LD~~~~~-~l~~~l~~~~~~----g~tii~vtH 194 (271)
T PRK13638 165 AGLDPAGRT-QMIAIIRRIVAQ----GNHVIISSH 194 (271)
T ss_pred ccCCHHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 999999875 444777776542 566677765
No 110
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=9.6e-22 Score=193.25 Aligned_cols=160 Identities=16% Similarity=0.075 Sum_probs=116.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~-- 438 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.++. +++++.|...+...+.
T Consensus 15 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 15 ILFSGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL 92 (204)
T ss_pred EEEecceEEECCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHH
Confidence 48999999999999 99999999999999999999999999999999987753 2555555432221111
Q ss_pred --cceeccCCCCCHHHHHHHHHHHhcccCCCccc-cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 439 --VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 439 --v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
+.+....++......+.++++.+++..+.... -+.|||++|++.|+++|+. +|+++|| ||||+|||+..+.
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~llll-DEPt~~LD~~~~~ 166 (204)
T PRK13538 93 ENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLT-----RAPLWIL-DEPFTAIDKQGVA 166 (204)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCccCCHHHHH
Confidence 11111111112334556778877775543334 4459999999999999995 9999998 9999999999874
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.|.++... +.+.+++|+
T Consensus 167 -~l~~~l~~~~~~----~~tiii~sh 187 (204)
T PRK13538 167 -RLEALLAQHAEQ----GGMVILTTH 187 (204)
T ss_pred -HHHHHHHHHHHC----CCEEEEEec
Confidence 444777766532 456666665
No 111
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.85 E-value=2.2e-21 Score=192.27 Aligned_cols=181 Identities=18% Similarity=0.151 Sum_probs=126.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~l~ 438 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 14 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (222)
T cd03224 14 QILFGVSLTVPEGE--IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91 (222)
T ss_pred eEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence 48999999999999 99999999999999999999999999999999986642 2778887654333221
Q ss_pred c----ceeccCCC-CCHHHHHHHHHHHh-cccC-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 439 V----PIFEKGYE-KDPAIVAKEAIQEA-TRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 439 v----~l~~~~~~-~d~~~ia~~al~~a-~l~~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+ .+....+. ......+.++++.+ .+.. .+..+...||||+|++.|+++|.. +|+++|| ||||+|||+
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEPt~~LD~ 165 (222)
T cd03224 92 VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS-----RPKLLLL-DEPSEGLAP 165 (222)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-CCCcccCCH
Confidence 1 11111111 12233444556655 2333 344445569999999999999994 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
..+ ..|.+.|..+... +.+.|++|+-.. ......-.|.++-.|+-+
T Consensus 166 ~~~-~~l~~~l~~~~~~----~~tiii~sH~~~----------~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 166 KIV-EEIFEAIRELRDE----GVTILLVEQNAR----------FALEIADRAYVLERGRVV 211 (222)
T ss_pred HHH-HHHHHHHHHHHHC----CCEEEEEeCCHH----------HHHHhccEEEEeeCCeEE
Confidence 876 4555777776542 567777776221 111223466777777654
No 112
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.4e-21 Score=209.19 Aligned_cols=162 Identities=20% Similarity=0.243 Sum_probs=121.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~ 434 (589)
..+|++++|++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+.
T Consensus 41 ~~~L~~isl~i~~Ge--i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 347999999999999 99999999999999999999999999999999987752 378888865433
Q ss_pred hc------cccceeccCCCC-CHHHHHHHHHHHhcccCCCccc-cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 435 RR------LQVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 435 ~~------l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
.. +.+.....+... +....+.++++.+++..+.... -..||||+||+.|+++|+. +|+++|| ||||
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~-----~P~iLLL-DEPt 192 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAI-----NPDILLM-DEAF 192 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-ECCC
Confidence 22 222111111111 1234566778888876654444 4559999999999999994 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|||+..+. .+.+.|..+... .+.+.|++|+
T Consensus 193 s~LD~~~r~-~l~~~L~~l~~~---~g~TIIivTH 223 (400)
T PRK10070 193 SALDPLIRT-EMQDELVKLQAK---HQRTIVFISH 223 (400)
T ss_pred ccCCHHHHH-HHHHHHHHHHHH---CCCeEEEEEC
Confidence 999999874 444677666532 2667777777
No 113
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.7e-21 Score=190.60 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=116.8
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhh------cccc
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHAR------RLQV 439 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~------~l~v 439 (589)
+++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. +++++.|...... ++.+
T Consensus 16 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGE--ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 8999999999 99999999999999999999999999999999987753 3788888654322 2222
Q ss_pred ceecc-CCCCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHH
Q 007789 440 PIFEK-GYEKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 517 (589)
Q Consensus 440 ~l~~~-~~~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 517 (589)
..... .........+.++++.+++.......+ ..||||+|++.|+++|+. +|+++|| ||||+|||+..+. .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~-----~p~llll-DEP~~~LD~~~~~-~ 166 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVR-----DKPVLLL-DEPFAALDPALRA-E 166 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccCCHHHHH-H
Confidence 11111 001122345667788777765433344 459999999999999995 9999998 9999999999874 4
Q ss_pred HHHHHHHhhcCCCCCCccEEEEcc
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.+.|..+... .+.+.+++|+
T Consensus 167 l~~~l~~~~~~---~~~tii~~sH 187 (211)
T cd03298 167 MLDLVLDLHAE---TKMTVLMVTH 187 (211)
T ss_pred HHHHHHHHHHh---cCCEEEEEec
Confidence 55777766532 2667777776
No 114
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.85 E-value=2.6e-21 Score=192.27 Aligned_cols=161 Identities=19% Similarity=0.161 Sum_probs=115.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHh--hh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--HA 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~--~~ 434 (589)
.+|++++|++++|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|... +.
T Consensus 19 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 58999999999999 99999999999999999999999999999999987642 2677777652 22
Q ss_pred hcc------ccceeccCCCCCHH--HH-HHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 435 RRL------QVPIFEKGYEKDPA--IV-AKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 435 ~~l------~v~l~~~~~~~d~~--~i-a~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
..+ .............. .. +.++++.+++. .+ +..+...||||+|++.|+++|.. +|+++|| |
T Consensus 97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lllL-D 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL-----NPKLLIA-D 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhc-----CCCEEEe-c
Confidence 111 11110111111111 11 23566666663 22 34445569999999999999994 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+|||+..+ ..+.+.|.++.... +.+.|++|+
T Consensus 171 EPt~~LD~~~~-~~l~~~l~~~~~~~---~~tii~~sH 204 (228)
T cd03257 171 EPTSALDVSVQ-AQILDLLKKLQEEL---GLTLLFITH 204 (228)
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHHHc---CCEEEEEeC
Confidence 99999999876 45557777775431 456677776
No 115
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.1e-21 Score=202.62 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=123.0
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHh--h
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~--~ 433 (589)
+.+|++|+|++.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.+.|+. ++++++|... +
T Consensus 28 ~~~l~~vsl~i~~Ge--~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 28 VKALDGVSFTLERGK--TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSL 105 (327)
T ss_pred eeEEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhc
Confidence 568999999999999 99999999999999999999999999999999998762 3788888652 2
Q ss_pred hh------ccccceec-cCCC-CCHHHHHHHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 434 AR------RLQVPIFE-KGYE-KDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 434 ~~------~l~v~l~~-~~~~-~d~~~ia~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
.. ++..++.. .... .+....+.++++.+++.. ++..+...||||+||+.||++|+. +|+++|+ |
T Consensus 106 ~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~-----~P~lLil-D 179 (327)
T PRK11308 106 NPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALML-----DPDVVVA-D 179 (327)
T ss_pred CCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHc-----CCCEEEE-E
Confidence 11 11111111 0111 122345677888877742 355566679999999999999994 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||++||+..+...+ +.|.++... .+.+.+++|+
T Consensus 180 EPts~LD~~~~~~i~-~lL~~l~~~---~g~til~iTH 213 (327)
T PRK11308 180 EPVSALDVSVQAQVL-NLMMDLQQE---LGLSYVFISH 213 (327)
T ss_pred CCCccCCHHHHHHHH-HHHHHHHHH---cCCEEEEEeC
Confidence 999999999886555 677766543 2678888887
No 116
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.85 E-value=1.7e-21 Score=208.10 Aligned_cols=162 Identities=20% Similarity=0.235 Sum_probs=123.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCC--cEEEEcccccC-------ccchhhhhHhhhhcc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK--VSVMMAACDTF-------RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~--GkV~l~~~Dt~-------RigaveQL~~~~~~l-- 437 (589)
.+|++++|++..|+ +++|+|||||||||||++|+|+++|+. |+|.+.+.++. ++|+++|...+...+
T Consensus 19 ~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 19 TVLDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred EEEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH
Confidence 58999999999999 999999999999999999999999999 99999998752 488999876444333
Q ss_pred ----ccceeccCCC-CCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 438 ----QVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 438 ----~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
..++...+.. .+....+.++++.+++.++....+.+ ||||+||++|+|+|+. +|+++|| ||||+|||+
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~-----~P~llLL-DEP~s~LD~ 170 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI-----EPDVLLL-DEPLSALDA 170 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCccccCCH
Confidence 2222111111 11234567788888887655445544 9999999999999994 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+. .+.+.|..+.+.. .+++.|++|+
T Consensus 171 ~~r~-~l~~~l~~l~~~~--~g~til~vTH 197 (362)
T TIGR03258 171 NIRA-NMREEIAALHEEL--PELTILCVTH 197 (362)
T ss_pred HHHH-HHHHHHHHHHHhC--CCCEEEEEeC
Confidence 8764 4446666665421 1578888887
No 117
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.85 E-value=3.8e-21 Score=191.56 Aligned_cols=180 Identities=20% Similarity=0.250 Sum_probs=125.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH-----hhCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-----LQHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll-----~~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|++ +|.+|+|.+.+.++. ++++++|...
T Consensus 14 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 14 HALKDISLDIPKGE--ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 48999999999999 99999999999999999999999 899999999987642 2677777654
Q ss_pred hh-----hccccceeccCCCCC--HHHHHHHHHHHhcccCC-Cccc--cccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 433 HA-----RRLQVPIFEKGYEKD--PAIVAKEAIQEATRNGS-DVVL--VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 433 ~~-----~~l~v~l~~~~~~~d--~~~ia~~al~~a~l~~~-d~vl--iDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+. +++.......+.... ....+.++++.+++... +..+ ...||||+|++.|+++|+. +|+++||
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~llll- 165 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN-----EPEVLLL- 165 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 32 222111111111111 23455677777777543 3332 4559999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||||+|||+..+. .+.+.|.++... .+.|++|+ |.- ......-.|..+..|+-+
T Consensus 166 DEPt~~LD~~~~~-~l~~~l~~~~~~-----~tii~~sH-~~~---------~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 166 DEPTSALDPISTA-KIEELIAELKKE-----YTIVIVTH-NMQ---------QAARVADRTAFLLNGRLV 219 (227)
T ss_pred eCCCccCCHHHHH-HHHHHHHHHhhC-----cEEEEEec-cHH---------HHHHhCCEEEEEeCCEEE
Confidence 9999999999875 444777666532 45566665 321 111223356677666644
No 118
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=2.7e-21 Score=194.71 Aligned_cols=200 Identities=22% Similarity=0.208 Sum_probs=136.8
Q ss_pred HHHHHHHHhcCccc-ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc--------
Q 007789 353 AMEEALVRILTPRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------- 423 (589)
Q Consensus 353 al~~~l~~il~p~~-~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R-------- 423 (589)
.+..++..++.|+. .++++.||||.+++|+ +++|+|+|||||||||++|+|++.|++|+|.+.|.|+||
T Consensus 21 gl~g~l~~~~~~k~~~~~AVqdisf~IP~G~--ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~ 98 (325)
T COG4586 21 GLKGSLNHFFHRKERSIEAVQDISFEIPKGE--IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS 98 (325)
T ss_pred hhHHHHHhhcCchhhhhhhhheeeeecCCCc--EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHH
Confidence 45556666666665 5788999999999999 999999999999999999999999999999999999987
Q ss_pred cchhhhhHh--hhhcc---ccceeccCCCCCHH---HHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhc
Q 007789 424 SGAVEQLRT--HARRL---QVPIFEKGYEKDPA---IVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLN 494 (589)
Q Consensus 424 igaveQL~~--~~~~l---~v~l~~~~~~~d~~---~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~ 494 (589)
+++|.-.++ +.... .+.+....|..... +......+.+++.++-..++.+ |-|++.|+.|+.+|. +
T Consensus 99 ~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLL-----h 173 (325)
T COG4586 99 IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALL-----H 173 (325)
T ss_pred HHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhc-----C
Confidence 333321110 00000 01111122333332 3444556666777776777776 999999999999999 4
Q ss_pred CCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCccc
Q 007789 495 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 574 (589)
Q Consensus 495 ~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~D 574 (589)
+|++++| ||||.|||...|... .+.++++.... +.|++.-|+ +-.| .....-.|.-|-.||-+.|
T Consensus 174 ~p~VLfL-DEpTvgLDV~aq~~i-r~Flke~n~~~---~aTVllTTH-~~~d---------i~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 174 PPKVLFL-DEPTVGLDVNAQANI-REFLKEYNEER---QATVLLTTH-IFDD---------IATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred CCcEEEe-cCCccCcchhHHHHH-HHHHHHHHHhh---CceEEEEec-chhh---------HHHhhhheEEeeCCcEeec
Confidence 7777776 999999999987533 35666665443 555444443 3321 1233446777888887753
No 119
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=5.4e-21 Score=182.43 Aligned_cols=182 Identities=20% Similarity=0.228 Sum_probs=137.6
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc----------------------Ccc
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------------------FRS 424 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt----------------------~Ri 424 (589)
..++|++||+....|. +|.|||-+|+||||+|+||..+-.|+.|+|.+.+..+ .|.
T Consensus 18 ~~eVLKGvSL~A~~Gd--VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L 95 (256)
T COG4598 18 EHEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRL 95 (256)
T ss_pred cchhhcceeeecCCCC--EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHh
Confidence 4689999999999999 9999999999999999999999999999999988765 247
Q ss_pred chhhhhHhhhhcc-------ccceeccCCCC-CHHHHHHHHHHHhcccC-CCccccccCccccccHHHHHHHHhhhhhcC
Q 007789 425 GAVEQLRTHARRL-------QVPIFEKGYEK-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNN 495 (589)
Q Consensus 425 gaveQL~~~~~~l-------~v~l~~~~~~~-d~~~ia~~al~~a~l~~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~ 495 (589)
|+|+|...+...+ ..|+.--+..+ ++.+.+...+..+++.. .+.++...|||+|||++|||+|+ ++
T Consensus 96 ~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLa-----me 170 (256)
T COG4598 96 GMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALA-----ME 170 (256)
T ss_pred hHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHh-----cC
Confidence 7888865443333 23333222222 33455666666666643 45778888999999999999999 69
Q ss_pred CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCC
Q 007789 496 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 571 (589)
Q Consensus 496 PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~ 571 (589)
|+++|| ||||+.|||.-.-..+ +.+.++++. +-|.+++|+--. .+ ....--|+|+-.|.-
T Consensus 171 P~vmLF-DEPTSALDPElVgEVL-kv~~~LAeE----grTMv~VTHEM~------FA----R~Vss~v~fLh~G~i 230 (256)
T COG4598 171 PEVMLF-DEPTSALDPELVGEVL-KVMQDLAEE----GRTMVVVTHEMG------FA----RDVSSHVIFLHQGKI 230 (256)
T ss_pred CceEee-cCCcccCCHHHHHHHH-HHHHHHHHh----CCeEEEEeeehh------HH----HhhhhheEEeeccee
Confidence 999999 9999999998776666 788888887 556778887222 22 222335788877653
No 120
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.85 E-value=2.5e-21 Score=193.99 Aligned_cols=159 Identities=19% Similarity=0.232 Sum_probs=115.8
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----ccchhhhhHhhhh------ccccc
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----RSGAVEQLRTHAR------RLQVP 440 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----RigaveQL~~~~~------~l~v~ 440 (589)
|++++|++.+|+ +++|+|+||+|||||+++|+|+++|++|+|.+.+.++. +.+++.|...+.. ++...
T Consensus 1 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGE--FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence 468999999999 99999999999999999999999999999999987753 2467777543322 22221
Q ss_pred eec--cCCCC-CHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 441 IFE--KGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 441 l~~--~~~~~-d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
... ..... .....+.++++.+++... +..+...||||+||+.|+++|.. +|+++|| ||||+|||+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~lllL-DEPt~gLD~~~~~- 151 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSI-----RPKVLLL-DEPFGALDALTRG- 151 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-cCCCcCCCHHHHH-
Confidence 100 01111 112345667777777543 33444559999999999999995 9999998 9999999999864
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.|..+.... +.+.|++|+
T Consensus 152 ~l~~~l~~~~~~~---~~tii~~sH 173 (230)
T TIGR01184 152 NLQEELMQIWEEH---RVTVLMVTH 173 (230)
T ss_pred HHHHHHHHHHHhc---CCEEEEEeC
Confidence 4557777665432 567777776
No 121
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.84 E-value=2.5e-21 Score=198.47 Aligned_cols=161 Identities=17% Similarity=0.282 Sum_probs=117.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhh--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHA-- 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~-- 434 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 21 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 98 (269)
T PRK11831 21 CIFDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD 98 (269)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC
Confidence 48999999999999 99999999999999999999999999999999987642 267777764332
Q ss_pred ----hccccceecc-CCCC-CHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 435 ----RRLQVPIFEK-GYEK-DPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 435 ----~~l~v~l~~~-~~~~-d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
+++.+.+... .... .....+.++++.+++.+.....+ ..||||+|++.||++|+. +|+++|| ||||+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~-----~p~lllL-DEPt~ 172 (269)
T PRK11831 99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL-----EPDLIMF-DEPFV 172 (269)
T ss_pred CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCCc
Confidence 2222211110 0111 11234556677777765433334 459999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+. .+.+.|..+... .+.+.|++|+
T Consensus 173 ~LD~~~~~-~l~~~l~~~~~~---~g~tiiivsH 202 (269)
T PRK11831 173 GQDPITMG-VLVKLISELNSA---LGVTCVVVSH 202 (269)
T ss_pred cCCHHHHH-HHHHHHHHHHHh---cCcEEEEEec
Confidence 99999864 444777776543 2567777776
No 122
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3e-21 Score=199.43 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=119.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------ccchhhhhHh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRT----- 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------RigaveQL~~----- 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.|.++. ++|+++|...
T Consensus 20 ~~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 20 HALKGININIKKGE--VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 48999999999999 99999999999999999999999999999999997752 3788888541
Q ss_pred --hhhccccceeccCCCC-CHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 433 --HARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 433 --~~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
..+++.......+... .....+.++++.+++..+....+ ..||||+|++.|+++|+. +|+++|| ||||+|
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~-----~p~lLil-DEPt~g 171 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM-----EPKVLVL-DEPTAG 171 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCccC
Confidence 1222211111111111 12244667778777765444444 459999999999999994 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+. .|.+.|..+... .+.+.+++|+
T Consensus 172 LD~~~~~-~l~~~l~~l~~~---~g~tillvsH 200 (283)
T PRK13636 172 LDPMGVS-EIMKLLVEMQKE---LGLTIIIATH 200 (283)
T ss_pred CCHHHHH-HHHHHHHHHHHh---CCCEEEEEec
Confidence 9999874 444777777543 2567777766
No 123
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.1e-21 Score=201.69 Aligned_cols=160 Identities=21% Similarity=0.242 Sum_probs=118.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc---------------------------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------------------------- 421 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt--------------------------- 421 (589)
.+|++++|++.+|+ +++|+|+||||||||++.|+|+++|+.|+|.+.+.+.
T Consensus 21 ~~l~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (305)
T PRK13651 21 KALDNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIK 98 (305)
T ss_pred cceeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccc
Confidence 48999999999999 9999999999999999999999999999999975432
Q ss_pred ------CccchhhhhH-------hhhhccccceeccCCCC-CHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHH
Q 007789 422 ------FRSGAVEQLR-------THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMR 485 (589)
Q Consensus 422 ------~RigaveQL~-------~~~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~Lar 485 (589)
.++|+++|.. +..+++.+.....+... +....+.++++.+++. .+ +..+...||||+|++.||+
T Consensus 99 ~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~ 178 (305)
T PRK13651 99 KIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAG 178 (305)
T ss_pred hHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 1368888853 11222222111111111 1234567778888775 33 4445556999999999999
Q ss_pred HHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 486 ALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 486 aL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|+. +|+++|| ||||+|||+..+. .+.+.|..+... +.++|++|+
T Consensus 179 aL~~-----~P~lLlL-DEPt~~LD~~~~~-~l~~~l~~l~~~----g~tiiivtH 223 (305)
T PRK13651 179 ILAM-----EPDFLVF-DEPTAGLDPQGVK-EILEIFDNLNKQ----GKTIILVTH 223 (305)
T ss_pred HHHh-----CCCEEEE-eCCCCCCCHHHHH-HHHHHHHHHHHC----CCEEEEEee
Confidence 9995 9999998 9999999998764 455777777532 677788877
No 124
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.84 E-value=4.3e-21 Score=202.80 Aligned_cols=162 Identities=16% Similarity=0.108 Sum_probs=122.6
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhH--hh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLR--TH 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~--~~ 433 (589)
..+|++|+|++.+|+ +++|+|+||+|||||++.|+|++.|++|+|.+.|.++. ++++++|.. .+
T Consensus 34 ~~~l~~vsl~i~~Ge--~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l 111 (331)
T PRK15079 34 LKAVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASL 111 (331)
T ss_pred eEEEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhc
Confidence 568999999999999 99999999999999999999999999999999998762 378888864 22
Q ss_pred hhcc------ccceecc--CCC-CCHHHHHHHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 434 ARRL------QVPIFEK--GYE-KDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 434 ~~~l------~v~l~~~--~~~-~d~~~ia~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
...+ ..++... ... .+....+.++++.+++.. .+..+...||||+||+.||++|+ .+|+++|+
T Consensus 112 ~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~-----~~P~llil- 185 (331)
T PRK15079 112 NPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI-----LEPKLIIC- 185 (331)
T ss_pred CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 2222 1111111 111 112345567788777732 34555667999999999999999 49999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+...+ +.|..+... .+.+.+++|+
T Consensus 186 DEPts~LD~~~~~~i~-~lL~~l~~~---~~~til~iTH 220 (331)
T PRK15079 186 DEPVSALDVSIQAQVV-NLLQQLQRE---MGLSLIFIAH 220 (331)
T ss_pred eCCCccCCHHHHHHHH-HHHHHHHHH---cCCEEEEEeC
Confidence 9999999999886555 677776543 2678888877
No 125
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.5e-21 Score=201.59 Aligned_cols=162 Identities=19% Similarity=0.159 Sum_probs=122.2
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh----CCcEEEEcccccC-------------ccchhhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTF-------------RSGAVEQL 430 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~----~~GkV~l~~~Dt~-------------RigaveQL 430 (589)
..+|++|+|++.+|+ +++|+|+||||||||++.|+|++.+ ++|+|.+.|.|+. ++++++|.
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~ 97 (326)
T PRK11022 20 FRAVDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQD 97 (326)
T ss_pred EEEEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 468999999999999 9999999999999999999999873 7899999998862 27888886
Q ss_pred Hh--hhhccccc------e--eccCCCCCHHHHHHHHHHHhcccC----CCccccccCccccccHHHHHHHHhhhhhcCC
Q 007789 431 RT--HARRLQVP------I--FEKGYEKDPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP 496 (589)
Q Consensus 431 ~~--~~~~l~v~------l--~~~~~~~d~~~ia~~al~~a~l~~----~d~vliDTSGg~qqr~~LaraL~kl~~~~~P 496 (589)
.. +...+.+. + .......+..+.+.++++.+++.. .+..+...||||+||+.||++|+. +|
T Consensus 98 ~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~-----~P 172 (326)
T PRK11022 98 PMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC-----RP 172 (326)
T ss_pred chhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHh-----CC
Confidence 52 22222111 1 000111223355677888877753 234555669999999999999994 99
Q ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 497 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 497 dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+++|+ ||||+|||+..+...+ +.|.++... .+.+.|++|+
T Consensus 173 ~llil-DEPts~LD~~~~~~il-~lL~~l~~~---~g~til~iTH 212 (326)
T PRK11022 173 KLLIA-DEPTTALDVTIQAQII-ELLLELQQK---ENMALVLITH 212 (326)
T ss_pred CEEEE-eCCCCCCCHHHHHHHH-HHHHHHHHh---cCCEEEEEeC
Confidence 99998 9999999999886555 677776543 2678888887
No 126
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.3e-21 Score=198.83 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=118.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhH--h-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR--T- 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~--~- 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|++|+|.+.+.++. ++|+++|.. .
T Consensus 20 ~~l~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 20 RALFDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 48999999999999 99999999999999999999999999999999997742 378888853 1
Q ss_pred ----hhhccccceeccCCCCC---HHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 433 ----HARRLQVPIFEKGYEKD---PAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 433 ----~~~~l~v~l~~~~~~~d---~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
..+++. +....++.. ....+.++++.+++. .+ +..+-..||||+|++.||++|+ .+|+++|| |
T Consensus 98 ~~~tv~~~l~--~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~-----~~p~illL-D 169 (288)
T PRK13643 98 FEETVLKDVA--FGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA-----MEPEVLVL-D 169 (288)
T ss_pred ccchHHHHHH--hHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH-----hCCCEEEE-E
Confidence 122221 111111211 224456677777774 34 3444455999999999999999 49999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+|||+..+. .+.+.|..+... +.+++++|+
T Consensus 170 EPt~gLD~~~~~-~l~~~l~~l~~~----g~til~vtH 202 (288)
T PRK13643 170 EPTAGLDPKARI-EMMQLFESIHQS----GQTVVLVTH 202 (288)
T ss_pred CCccCCCHHHHH-HHHHHHHHHHHC----CCEEEEEec
Confidence 999999998764 444777776542 677778777
No 127
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=4.4e-21 Score=193.19 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=118.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhccc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l~- 438 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|+++|++|+|.+.+.++. ++++++|...+...+.
T Consensus 15 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 15 KAVNNLNLEIAKGE--FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred eEeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 48999999999999 99999999999999999999999999999999987652 3677777653332221
Q ss_pred ---cceeccCCCCC---HHHHHHHHHHHhcccC--C-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 439 ---VPIFEKGYEKD---PAIVAKEAIQEATRNG--S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 439 ---v~l~~~~~~~d---~~~ia~~al~~a~l~~--~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
+.+.....+.+ ....+.++++.+++.. + +..+-..||||+|++.|+++|.. +|+++|| ||||+||
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEPt~~L 166 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA-----DPPLLLM-DEPFGAL 166 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc-----CCCEEEe-cCCcccC
Confidence 11111111111 2234567778777763 3 33344559999999999999995 9999998 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 510 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+..+ ..+.+.|..+... .+.+.|++|+
T Consensus 167 D~~~~-~~l~~~L~~~~~~---~g~tvii~sH 194 (242)
T cd03295 167 DPITR-DQLQEEFKRLQQE---LGKTIVFVTH 194 (242)
T ss_pred CHHHH-HHHHHHHHHHHHH---cCCEEEEEec
Confidence 99876 4555777776542 1566777776
No 128
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.84 E-value=5.6e-21 Score=192.15 Aligned_cols=162 Identities=20% Similarity=0.236 Sum_probs=115.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhh-hhHhhhhccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVE-QLRTHARRLQ 438 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------Rigave-QL~~~~~~l~ 438 (589)
..+|++++|.+++|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.+.. +++++. |...+...+.
T Consensus 34 ~~il~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 34 VEALKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred eeeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 458999999999999 99999999999999999999999999999999887642 366665 4322222111
Q ss_pred ----cceeccCCCCCH---HHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 439 ----VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 439 ----v~l~~~~~~~d~---~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
+.+....++... ...+..+++.+++... +..+-+.||||+|++.|+++|+. +|+++|| ||||+|||
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~llll-DEPt~~LD 185 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLH-----EPEILFL-DEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCCCCCC
Confidence 111111111112 2334556666666543 33444559999999999999995 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+..+. .+.+.|..+.... +.+.|++|+
T Consensus 186 ~~~~~-~l~~~l~~~~~~~---~~tiiivsH 212 (236)
T cd03267 186 VVAQE-NIRNFLKEYNRER---GTTVLLTSH 212 (236)
T ss_pred HHHHH-HHHHHHHHHHhcC---CCEEEEEec
Confidence 99874 4557777765432 556677766
No 129
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.84 E-value=4.6e-21 Score=193.67 Aligned_cols=160 Identities=18% Similarity=0.200 Sum_probs=115.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------------ccchhhhhH
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------------RSGAVEQLR 431 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------------RigaveQL~ 431 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|..
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 17 TVLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 48999999999999 99999999999999999999999999999999876542 256676654
Q ss_pred hhh------hcccccee-ccCCC-CCHHHHHHHHHHHhcccCCCcc-ccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 432 THA------RRLQVPIF-EKGYE-KDPAIVAKEAIQEATRNGSDVV-LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 432 ~~~------~~l~v~l~-~~~~~-~d~~~ia~~al~~a~l~~~d~v-liDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
.+. +++..... ..... ......+.++++.+++...... +-..||||+|++.|+++|+. +|+++||
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~-----~p~lllL- 168 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM-----RPEVILF- 168 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 322 22211100 01111 1122345667777776654333 34459999999999999994 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|.++... +.+.|++|+
T Consensus 169 DEPt~~LD~~~~~-~l~~~l~~~~~~----~~tvi~~tH 202 (250)
T PRK11264 169 DEPTSALDPELVG-EVLNTIRQLAQE----KRTMVIVTH 202 (250)
T ss_pred eCCCccCCHHHHH-HHHHHHHHHHhc----CCEEEEEeC
Confidence 9999999998764 444777776542 567777776
No 130
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.84 E-value=6e-21 Score=184.20 Aligned_cols=134 Identities=22% Similarity=0.242 Sum_probs=105.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc---------cchhhhhHhhhhcccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLRTHARRLQV 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R---------igaveQL~~~~~~l~v 439 (589)
.+|++++|.+.+|+ +++|+||||+||||+++.|+|+++|+.|+|.+.+.++.+ +++++|
T Consensus 13 ~~l~~~~~~i~~G~--~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---------- 80 (180)
T cd03214 13 TVLDDLSLSIEAGE--IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ---------- 80 (180)
T ss_pred eeEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH----------
Confidence 48999999999999 999999999999999999999999999999999877632 233332
Q ss_pred ceeccCCCCCHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHH
Q 007789 440 PIFEKGYEKDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 518 (589)
Q Consensus 440 ~l~~~~~~~d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 518 (589)
+++.+++..+. ..+-..|||++|++.|+++|+. +|+++|| ||||+|||+..+ ..+
T Consensus 81 -----------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~-----~p~llll-DEP~~~LD~~~~-~~~ 136 (180)
T cd03214 81 -----------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQ-----EPPILLL-DEPTSHLDIAHQ-IEL 136 (180)
T ss_pred -----------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCccCCCHHHH-HHH
Confidence 44444444332 2334459999999999999995 9999998 999999999876 455
Q ss_pred HHHHHHhhcCCCCCCccEEEEcc
Q 007789 519 NQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 519 ~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+..+.... +.+.|++|+
T Consensus 137 ~~~l~~~~~~~---~~tiii~sh 156 (180)
T cd03214 137 LELLRRLARER---GKTVVMVLH 156 (180)
T ss_pred HHHHHHHHHhc---CCEEEEEeC
Confidence 57777765431 456677665
No 131
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.84 E-value=5.2e-21 Score=189.13 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=117.9
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhh------hc
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHA------RR 436 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~------~~ 436 (589)
++.+++|++.+|+ +++|+||||+|||||++.|+|+++|++|+|.+.+.++. ++++++|...+. ++
T Consensus 13 ~~~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGE--IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4568999999999 99999999999999999999999999999999988753 277888764332 22
Q ss_pred cccceeccCC-CCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 437 LQVPIFEKGY-EKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 437 l~v~l~~~~~-~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
+...+..... .......+.++++.+++..+....+. .||||+|++.|+++|.. +|+++|| ||||+|+|+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-----~p~llll-DEPt~~LD~~~~ 164 (213)
T TIGR01277 91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVR-----PNPILLL-DEPFSALDPLLR 164 (213)
T ss_pred HHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCCccCCHHHH
Confidence 2222111100 11123445667887777654444444 49999999999999995 9999998 999999999987
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
. .+.+.|..+.... +.+.|++|+
T Consensus 165 ~-~~~~~l~~~~~~~---~~tii~vsh 187 (213)
T TIGR01277 165 E-EMLALVKQLCSER---QRTLLMVTH 187 (213)
T ss_pred H-HHHHHHHHHHHhc---CCEEEEEeC
Confidence 5 4447777765432 566677766
No 132
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=7.3e-21 Score=180.35 Aligned_cols=187 Identities=21% Similarity=0.160 Sum_probs=143.9
Q ss_pred ccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhH
Q 007789 365 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR 431 (589)
Q Consensus 365 ~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~ 431 (589)
...+.||++|++.+..|+ .++||||+|+||||||..|||+-.|++|+|.+.|.+.+ ++|.|+|..
T Consensus 20 ~~~l~IL~~V~L~v~~Ge--~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 20 EGELSILKGVELVVKRGE--TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CcceeEeecceEEecCCc--eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 345789999999999999 99999999999999999999999999999999998873 389999977
Q ss_pred hhhhcc------ccceeccCC-CCCHHHHHHHHHHHhcccC-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 432 THARRL------QVPIFEKGY-EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 432 ~~~~~l------~v~l~~~~~-~~d~~~ia~~al~~a~l~~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
.+..+| .+|+...+. ..++...+.+.++.+++.. ..+++-..|||+|||++|+|+++ ..|++++. |
T Consensus 98 ~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa-----~~P~vLfA-D 171 (228)
T COG4181 98 HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA-----GRPDVLFA-D 171 (228)
T ss_pred eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhc-----CCCCEEec-c
Confidence 655444 566654442 4567788899999998865 45667777999999999999999 49998888 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCccc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 574 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~D 574 (589)
|||-+||...-.+.. ..+- ...+.++.|.+++|+ |.. +... ...+.++-.|+-+.|
T Consensus 172 EPTGNLD~~Tg~~ia-DLlF---~lnre~G~TlVlVTH-D~~---------LA~R-c~R~~r~~~G~l~~~ 227 (228)
T COG4181 172 EPTGNLDRATGDKIA-DLLF---ALNRERGTTLVLVTH-DPQ---------LAAR-CDRQLRLRSGRLVED 227 (228)
T ss_pred CCCCCcchhHHHHHH-HHHH---HHhhhcCceEEEEeC-CHH---------HHHh-hhheeeeecceeccC
Confidence 999999987653322 3332 233456889999998 542 1122 224566777766543
No 133
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.9e-21 Score=197.22 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=118.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh-------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT------- 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~------- 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|++|+|.+.+.++. ++|++.|...
T Consensus 18 ~~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 18 EALNNINFIAPRNS--RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred ceeeEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 48999999999999 99999999999999999999999999999999987652 2677777531
Q ss_pred hhhccccceeccCCCCCH---HHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 433 HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 433 ~~~~l~v~l~~~~~~~d~---~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
..+++.... ...+.++ ...+.++++.+++... +..+...||||+|++.|+++|+. +|+++|| ||||+|
T Consensus 96 v~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~-----~p~llil-DEPt~g 167 (277)
T PRK13652 96 VEQDIAFGP--INLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM-----EPQVLVL-DEPTAG 167 (277)
T ss_pred HHHHHHhHH--HHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCccc
Confidence 122221111 1111222 2345677777777543 34445569999999999999994 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+ ..|.+.+..+.... +.+.+++|+
T Consensus 168 LD~~~~-~~l~~~l~~l~~~~---g~tvli~tH 196 (277)
T PRK13652 168 LDPQGV-KELIDFLNDLPETY---GMTVIFSTH 196 (277)
T ss_pred CCHHHH-HHHHHHHHHHHHhc---CCEEEEEec
Confidence 999876 45557777775432 567777776
No 134
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.9e-21 Score=193.43 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=116.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------------ccchhhhhHhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------------RSGAVEQLRTH 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------------RigaveQL~~~ 433 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.+++ ++++++|...+
T Consensus 16 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 16 QALFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred eeEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 58999999999999 99999999999999999999999999999999987642 36777775433
Q ss_pred hhccccc----e-eccCCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 434 ARRLQVP----I-FEKGYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 434 ~~~l~v~----l-~~~~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
...+.+. . .....+.. ....+.++++.+++..+....+ ..||||+|++.|+++|+. +|+++|| ||
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llil-DE 167 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM-----EPQVLLF-DE 167 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cC
Confidence 2222110 0 00001111 2234566677777654433334 459999999999999995 9999988 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+|||+..+. .+.+.|..+... +.+.+++|+
T Consensus 168 Pt~~LD~~~~~-~l~~~l~~~~~~----~~tii~~sh 199 (242)
T PRK11124 168 PTAALDPEITA-QIVSIIRELAET----GITQVIVTH 199 (242)
T ss_pred CCCcCCHHHHH-HHHHHHHHHHHc----CCEEEEEeC
Confidence 99999998764 444777776532 566777766
No 135
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=6.5e-21 Score=188.84 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=118.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------ccchhhhhHhhhhcccc---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLRTHARRLQV--- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------RigaveQL~~~~~~l~v--- 439 (589)
.+|++++|.+.+|+ +++|+|+||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...+.+
T Consensus 25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~ 102 (214)
T PRK13543 25 PVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLEN 102 (214)
T ss_pred eeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHH
Confidence 48999999999999 99999999999999999999999999999999987653 26777775433222111
Q ss_pred -ceeccCCCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHH
Q 007789 440 -PIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 517 (589)
Q Consensus 440 -~l~~~~~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 517 (589)
.+....++......+.++++.+++... +..+...|||++|++.|+++|+. +|+++|| ||||+|||+..+ +.
T Consensus 103 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEPt~~LD~~~~-~~ 175 (214)
T PRK13543 103 LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS-----PAPLWLL-DEPYANLDLEGI-TL 175 (214)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHHHH-HH
Confidence 111111122233455667777776543 44444569999999999999995 9999988 999999999976 45
Q ss_pred HHHHHHHhhcCCCCCCccEEEEcc
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.+.+..+... +.+.|++|+
T Consensus 176 l~~~l~~~~~~----~~tiii~sH 195 (214)
T PRK13543 176 VNRMISAHLRG----GGAALVTTH 195 (214)
T ss_pred HHHHHHHHHhC----CCEEEEEec
Confidence 55777776543 456677766
No 136
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=5.1e-21 Score=188.65 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=114.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------ccchhhhhHhhhhccc----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLRTHARRLQ---- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------RigaveQL~~~~~~l~---- 438 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.+.++. +++++.|...+...+.
T Consensus 16 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 16 VLFSGLSFTLAAGE--ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAEN 93 (207)
T ss_pred EEEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHH
Confidence 47999999999999 99999999999999999999999999999999987642 2566655332211111
Q ss_pred cceeccCCCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHH
Q 007789 439 VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 517 (589)
Q Consensus 439 v~l~~~~~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 517 (589)
+.+....++... ..+.++++.+++..+ +..+-..||||+|++.|+++|+. +|+++|| ||||+|||+..+. .
T Consensus 94 l~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~llll-DEPt~~LD~~~~~-~ 165 (207)
T PRK13539 94 LEFWAAFLGGEE-LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS-----NRPIWIL-DEPTAALDAAAVA-L 165 (207)
T ss_pred HHHHHHhcCCcH-HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHHHHH-H
Confidence 111111112222 335677777776543 23333459999999999999995 9999998 9999999999874 4
Q ss_pred HHHHHHHhhcCCCCCCccEEEEcc
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.+.|.++... +.+.+++|+
T Consensus 166 l~~~l~~~~~~----~~tiii~sH 185 (207)
T PRK13539 166 FAELIRAHLAQ----GGIVIAATH 185 (207)
T ss_pred HHHHHHHHHHC----CCEEEEEeC
Confidence 44777666543 556666665
No 137
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.84 E-value=9.4e-21 Score=203.46 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=132.3
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccc----cc-------------Cccchhhh
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC----DT-------------FRSGAVEQ 429 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~----Dt-------------~RigaveQ 429 (589)
...+|++++|++.+|+ +++|+|+||||||||+++|+|++.|+.|+|.+.+. |+ .++++++|
T Consensus 36 ~~~~l~~vsf~i~~Ge--i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 36 LVVGVANASLDIEEGE--ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred CEEEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 3557999999999999 99999999999999999999999999999999874 32 13788888
Q ss_pred hHhhhhcc------ccceeccCCC-CCHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 430 LRTHARRL------QVPIFEKGYE-KDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 430 L~~~~~~l------~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
...+...+ .+.+...+.. ......+.++++.+++.++. ..+...||||+|++.|+|+|+. +|+++||
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~-----~P~ILLl 188 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAM-----DADILLM 188 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE
Confidence 65443322 2211111111 11234567788888886654 4444569999999999999994 9999998
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||||+|||+..+...+ +.|..+... .+.+.+++|+ |. ..+....--|.++..|+-+
T Consensus 189 -DEPts~LD~~~r~~l~-~~L~~l~~~---~~~TII~iTH-dl---------~e~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 189 -DEPFSALDPLIRTQLQ-DELLELQAK---LNKTIIFVSH-DL---------DEALKIGNRIAIMEGGRII 244 (382)
T ss_pred -ECCCccCCHHHHHHHH-HHHHHHHHh---cCCEEEEEeC-CH---------HHHHHhCCEEEEEECCEEE
Confidence 9999999999875444 666666543 2678888877 22 1112334466667666654
No 138
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.1e-21 Score=191.85 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=117.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA----- 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~----- 434 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 17 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (241)
T PRK14250 17 EILKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94 (241)
T ss_pred eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHH
Confidence 48999999999999 99999999999999999999999999999999998752 267777764332
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
+++.+... ... .....+.++++.+++. ++ +..+-..||||+|++.|+++|+. +|+++|| ||||+|||+.
T Consensus 95 e~l~~~~~--~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~llll-DEPt~~LD~~ 165 (241)
T PRK14250 95 DNIEYGPM--LKG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN-----NPEVLLL-DEPTSALDPT 165 (241)
T ss_pred HHHhcchh--hcC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHH
Confidence 22211111 111 1234456677777774 33 33334459999999999999995 9999998 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+. .+.+.|..+... .+.+.|++|+
T Consensus 166 ~~~-~l~~~l~~~~~~---~g~tii~~sH 190 (241)
T PRK14250 166 STE-IIEELIVKLKNK---MNLTVIWITH 190 (241)
T ss_pred HHH-HHHHHHHHHHHh---CCCEEEEEec
Confidence 764 444777776542 2567777776
No 139
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.9e-21 Score=196.96 Aligned_cols=160 Identities=17% Similarity=0.115 Sum_probs=117.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhh-hhcc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH-ARRL 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~-~~~l 437 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. ++|++.|.... ....
T Consensus 16 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 16 PALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred ceeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 48999999999999 99999999999999999999999999999999987652 26777775421 1111
Q ss_pred ----ccceeccCCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 438 ----QVPIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 438 ----~v~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
++.+.....+.+ ....+.++++.+++..+....+ ..||||+|++.|+++|+. +|+++|| ||||+||
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lllL-DEPt~gL 167 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM-----EPECLIF-DEVTSML 167 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccC
Confidence 111111111112 2244566777777765444444 459999999999999995 9999998 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 510 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+..+. .+.+.|.++... +.+.+++|+
T Consensus 168 D~~~~~-~l~~~l~~l~~~----g~til~~tH 194 (274)
T PRK13644 168 DPDSGI-AVLERIKKLHEK----GKTIVYITH 194 (274)
T ss_pred CHHHHH-HHHHHHHHHHhC----CCEEEEEec
Confidence 998864 455777776542 667777776
No 140
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.9e-21 Score=192.60 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=117.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~l~ 438 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|++|+|.+.+.++. +++++.|.......+.
T Consensus 17 ~~l~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T PRK10895 17 RVVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94 (241)
T ss_pred EEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCc
Confidence 58999999999999 99999999999999999999999999999999987641 3677777653322211
Q ss_pred ----cceeccCC----CCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 439 ----VPIFEKGY----EKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 439 ----v~l~~~~~----~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
+.+..... .......+.++++.+++.......+ ..||||+|++.|+++|.. +|+++|| ||||+||
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEPt~~L 168 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA-----NPKFILL-DEPFAGV 168 (241)
T ss_pred HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccC
Confidence 11111111 1112234566677766654433334 459999999999999995 9999998 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 510 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+..+. .+.+.+..+... +.+.+++|+
T Consensus 169 D~~~~~-~l~~~l~~~~~~----g~tiii~sH 195 (241)
T PRK10895 169 DPISVI-DIKRIIEHLRDS----GLGVLITDH 195 (241)
T ss_pred CHHHHH-HHHHHHHHHHhc----CCEEEEEEc
Confidence 998764 444677766542 567777776
No 141
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.6e-21 Score=198.42 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=116.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------------ccchhhhhH---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------------RSGAVEQLR--- 431 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------------RigaveQL~--- 431 (589)
.+|++++|.+.+|+ +++|+|+||||||||+++|+|+++|+.|+|.+.+.++. +++++.|..
T Consensus 25 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 48999999999999 99999999999999999999999999999999886531 367777753
Q ss_pred ----hhhhccccceeccCCCC-CHHHHHHHHHHHhccc-CCCcc-ccccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 432 ----THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRN-GSDVV-LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 432 ----~~~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~-~~d~v-liDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
+..+++.+.....+... .....+.++++.+++. ++... +-..||||+|++.|+++|+. +|+++|| ||
T Consensus 103 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~-----~p~lLlL-DE 176 (289)
T PRK13645 103 LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM-----DGNTLVL-DE 176 (289)
T ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh-----CCCEEEE-eC
Confidence 12222221111011111 1123455667777763 33333 34459999999999999995 9999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+|||+..+. .+.+.|..+.... +.++|++|+
T Consensus 177 Pt~~LD~~~~~-~l~~~l~~~~~~~---~~tiiiisH 209 (289)
T PRK13645 177 PTGGLDPKGEE-DFINLFERLNKEY---KKRIIMVTH 209 (289)
T ss_pred CcccCCHHHHH-HHHHHHHHHHHhc---CCEEEEEec
Confidence 99999999874 4557777765422 567777776
No 142
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.84 E-value=4e-21 Score=196.71 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=117.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh--hhh--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT--HAR-- 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~--~~~-- 435 (589)
.+|++++|.+++|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|... +..
T Consensus 27 ~~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 27 EAVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred ceeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence 58999999999999 99999999999999999999999999999999987652 3677777542 111
Q ss_pred ----ccccceecc-CCC-CCHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 436 ----RLQVPIFEK-GYE-KDPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 436 ----~l~v~l~~~-~~~-~d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
.+....... ... .+....+.++++.+++. .. +..+-..||||+|++.|+++|+. +|+++|| ||||+
T Consensus 105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lllL-DEPt~ 178 (267)
T PRK15112 105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL-----RPKVIIA-DEALA 178 (267)
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh-----CCCEEEE-cCCcc
Confidence 111111100 111 11223456677777763 33 23334459999999999999995 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+ ..+.+.|.++.... +.+.|++|+
T Consensus 179 ~LD~~~~-~~l~~~l~~~~~~~---g~tviivsH 208 (267)
T PRK15112 179 SLDMSMR-SQLINLMLELQEKQ---GISYIYVTQ 208 (267)
T ss_pred cCCHHHH-HHHHHHHHHHHHHc---CcEEEEEeC
Confidence 9999876 45557777775432 567777776
No 143
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.5e-21 Score=197.14 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=119.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHh--h---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRT--H--- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~--~--- 433 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.+.++. ++|+++|... +
T Consensus 24 ~vl~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 24 LALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 58999999999999 99999999999999999999999999999999987652 3677777542 1
Q ss_pred --hhccccceeccCCCC-CHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 434 --ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 434 --~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
.+++.......+... +....+.++++.+++..+....+ ..||||+|++.|+++|+. +|+++|| ||||+||
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEPt~gL 175 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM-----RPECIIF-DEPTAML 175 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccC
Confidence 111111111011111 12345667788877766544444 459999999999999994 9999998 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 510 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+..+. .+.+.|..+... .+.+.+++|+
T Consensus 176 D~~~~~-~l~~~l~~l~~~---~g~tillvtH 203 (280)
T PRK13633 176 DPSGRR-EVVNTIKELNKK---YGITIILITH 203 (280)
T ss_pred CHHHHH-HHHHHHHHHHHh---cCCEEEEEec
Confidence 999875 445777777542 2677777776
No 144
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.7e-21 Score=185.26 Aligned_cols=183 Identities=19% Similarity=0.225 Sum_probs=138.0
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ 438 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l~ 438 (589)
..+|+++|+.+++|+ +.+|||||||||||||..++.+++.+.|+|.+.|.++- ++....|...+.-++.
T Consensus 14 ~~vl~~isl~i~~g~--iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 14 KVVLDDVSLDIPKGG--ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred EEeeccceeeecCCc--eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 358899999999999 99999999999999999999999999999999998873 2444444433333332
Q ss_pred c---------ceeccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 439 V---------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 439 v---------~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
| |+-......+...++.++++++.+.++....+|. |||++||.-+|..|++ +.|.+|| |||+.+
T Consensus 92 V~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQ-----dTdyvlL-DEPLNN 165 (252)
T COG4604 92 VRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQ-----DTDYVLL-DEPLNN 165 (252)
T ss_pred HHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeec-----cCcEEEe-cCcccc
Confidence 2 2222223456678889999999999998888887 9999999999999996 8899998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||..+..+.+ +.|+.++++. +-+.+++-+ | ++.+....--|+-+-.|+-+
T Consensus 166 LDmkHsv~iM-k~Lrrla~el---~KtiviVlH-D---------INfAS~YsD~IVAlK~G~vv 215 (252)
T COG4604 166 LDMKHSVQIM-KILRRLADEL---GKTIVVVLH-D---------INFASCYSDHIVALKNGKVV 215 (252)
T ss_pred cchHHHHHHH-HHHHHHHHHh---CCeEEEEEe-c---------ccHHHhhhhheeeecCCEEE
Confidence 9998876555 8888887765 555544433 2 22333334456666666654
No 145
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=4.6e-21 Score=192.66 Aligned_cols=160 Identities=21% Similarity=0.242 Sum_probs=117.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------ccchhhhhHhhhhc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTHARR- 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------RigaveQL~~~~~~- 436 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++|++|+|.+.+.++. +++++.|...+...
T Consensus 15 ~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 15 QVLHNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred EEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 58999999999999 99999999999999999999999999999999987753 25677765433222
Q ss_pred -----cccceec-cCCCC-CHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 437 -----LQVPIFE-KGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 437 -----l~v~l~~-~~~~~-d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
+...... ..... .....+.++++.+++... +..+-..||||+|++.|+++|+. +|+++|| ||||+|
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~llll-DEP~~~ 166 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV-----KPKLMLF-DEPTSA 166 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc-----CCCEEEE-cCCccc
Confidence 2111100 01111 122345667777766543 33444559999999999999995 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|+..+. .+.+.|..+... +.+.|++|+
T Consensus 167 LD~~~~~-~l~~~l~~~~~~----~~tiii~sH 194 (240)
T PRK09493 167 LDPELRH-EVLKVMQDLAEE----GMTMVIVTH 194 (240)
T ss_pred CCHHHHH-HHHHHHHHHHHc----CCEEEEEeC
Confidence 9998764 555777776532 566777776
No 146
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.1e-21 Score=197.02 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=116.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhH--hh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR--TH 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~--~~ 433 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. ++++++|.. .+
T Consensus 21 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 21 RALFDVNLTIEDGS--YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred ceeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 48999999999999 99999999999999999999999999999999986542 367888764 11
Q ss_pred -----hhccccceeccCCCC-CHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 434 -----ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 434 -----~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
.+++.+.....+... +....+.++++.+++. .. +..+-..||||+|++.|+++|+. +|+++|| |||
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~lllL-DEP 172 (280)
T PRK13649 99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAM-----EPKILVL-DEP 172 (280)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCC
Confidence 122211110011111 1223455667777775 22 34444559999999999999995 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+|||+..+. .+.+.|.++... +.++|++|+
T Consensus 173 t~~LD~~~~~-~l~~~l~~~~~~----~~tiiivsH 203 (280)
T PRK13649 173 TAGLDPKGRK-ELMTLFKKLHQS----GMTIVLVTH 203 (280)
T ss_pred cccCCHHHHH-HHHHHHHHHHHC----CCEEEEEec
Confidence 9999998764 555777766532 567777776
No 147
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.84 E-value=3.7e-21 Score=194.91 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=116.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------------------ccch
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------------------RSGA 426 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------------------Riga 426 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. ++++
T Consensus 14 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 14 TVLDGLNFSVAAGE--KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred eEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 58999999999999 99999999999999999999999999999999987653 2566
Q ss_pred hhhhHhhhhcccc----ce--e-ccCCC-CCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCC
Q 007789 427 VEQLRTHARRLQV----PI--F-EKGYE-KDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPD 497 (589)
Q Consensus 427 veQL~~~~~~l~v----~l--~-~~~~~-~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~Pd 497 (589)
++|...+...+.+ .+ . ..+.. ......+.++++.+++..... .+...|||++|++.|+++|+. +|+
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~-----~p~ 166 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAM-----RPK 166 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHc-----CCC
Confidence 6665433222111 11 0 00111 112234566777776654433 334459999999999999995 999
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 498 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 498 lILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
++|| ||||+|||+..+. .+.+.|.++... .+.+.|++|+
T Consensus 167 llll-DEP~~~LD~~~~~-~l~~~l~~~~~~---~~~tiiivsH 205 (252)
T TIGR03005 167 VMLF-DEVTSALDPELVG-EVLNVIRRLASE---HDLTMLLVTH 205 (252)
T ss_pred EEEE-eCCcccCCHHHHH-HHHHHHHHHHHh---cCcEEEEEeC
Confidence 9998 9999999998864 444777776543 2667788776
No 148
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.9e-21 Score=195.52 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=118.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------ccchhhhhHhh--------h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLRTH--------A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------RigaveQL~~~--------~ 434 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. ++++++|...+ .
T Consensus 21 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 21 TALRDASFTVPGGS--IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred EEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchh
Confidence 48999999999999 99999999999999999999999999999999987652 37888886432 1
Q ss_pred hccccceecc-C----CCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 435 RRLQVPIFEK-G----YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 435 ~~l~v~l~~~-~----~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
+++.+..+.. + ........+.++++.+++..+ +..+.+.||||+|++.|+++|.. +|+++|| ||||+|
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~-----~p~llll-DEPt~~ 172 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ-----QGQVILL-DEPFTG 172 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCcc
Confidence 1111111100 0 011123445667777777544 33444559999999999999994 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+. .+.+.|..+... +.+.|++|+
T Consensus 173 LD~~~~~-~l~~~L~~~~~~----g~tviivsH 200 (272)
T PRK15056 173 VDVKTEA-RIISLLRELRDE----GKTMLVSTH 200 (272)
T ss_pred CCHHHHH-HHHHHHHHHHhC----CCEEEEEeC
Confidence 9999874 445777776542 566777776
No 149
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.84 E-value=5.5e-21 Score=194.39 Aligned_cols=159 Identities=20% Similarity=0.185 Sum_probs=116.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhcc--ccceeccCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--QVPIFEKGY 446 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l--~v~l~~~~~ 446 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+. .++++++|...+...+ .+.-+...+
T Consensus 18 ~vl~~vs~~i~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~--~~i~~v~q~~~~~~~l~~~~~~~~~~~ 93 (251)
T PRK09544 18 RVLSDVSLELKPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--LRIGYVPQKLYLDTTLPLTVNRFLRLR 93 (251)
T ss_pred eEEEeEEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc--cCEEEeccccccccccChhHHHHHhcc
Confidence 48999999999999 99999999999999999999999999999998763 3588888865432221 111000001
Q ss_pred CCCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHh
Q 007789 447 EKDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 525 (589)
Q Consensus 447 ~~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l 525 (589)
.......+.++++.+++..... .+...||||+|++.|+++|+. +|+++|| ||||+|||+..+. .+.+.|..+
T Consensus 94 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~-----~p~lllL-DEPt~~LD~~~~~-~l~~~L~~~ 166 (251)
T PRK09544 94 PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLN-----RPQLLVL-DEPTQGVDVNGQV-ALYDLIDQL 166 (251)
T ss_pred ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCcCCCHHHHH-HHHHHHHHH
Confidence 1111234566777777765433 344459999999999999994 9999998 9999999998864 444777766
Q ss_pred hcCCCCCCccEEEEcc
Q 007789 526 SSSPNPQLIDGILLTK 541 (589)
Q Consensus 526 ~~~~~~~~it~IIlTK 541 (589)
.... +.+.|++|+
T Consensus 167 ~~~~---g~tiiivsH 179 (251)
T PRK09544 167 RREL---DCAVLMVSH 179 (251)
T ss_pred HHhc---CCEEEEEec
Confidence 5432 566677665
No 150
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6e-21 Score=195.85 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=117.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh-------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT------- 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~------- 432 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. +++++.|...
T Consensus 23 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 23 NALKNVSFEINEGE--YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 48999999999999 99999999999999999999999999999999987652 2678887642
Q ss_pred hhhccccceeccCCCC-CHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 433 HARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 433 ~~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
..+++........... .....+.++++.+++..+. ..+-..||||+|++.|+++|+. +|+++|| ||||+|||
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-----~p~lllL-DEP~~gLD 174 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL-----NPEIIIF-DESTSMLD 174 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccCC
Confidence 1222221111111111 1223456677777775543 3334459999999999999995 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+..+. .+.+.|..+.... +.+.|++|+
T Consensus 175 ~~~~~-~l~~~l~~~~~~~---~~tiii~sH 201 (271)
T PRK13632 175 PKGKR-EIKKIMVDLRKTR---KKTLISITH 201 (271)
T ss_pred HHHHH-HHHHHHHHHHHhc---CcEEEEEEe
Confidence 98764 4447777775432 356677766
No 151
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.84 E-value=7.3e-21 Score=194.50 Aligned_cols=162 Identities=20% Similarity=0.181 Sum_probs=118.9
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHh--h
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~--~ 433 (589)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|++|+|.+.+.++. ++++++|... +
T Consensus 24 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 24 APVLTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred eEEeeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 358999999999999 99999999999999999999999999999999987652 2677777642 2
Q ss_pred hhcc------cccee-ccCCCC-CHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 434 ARRL------QVPIF-EKGYEK-DPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 434 ~~~l------~v~l~-~~~~~~-d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
...+ ..+.. ...... .....+.++++.+++. .+ +..+...||||+|++.|+++|+. +|+++|| |
T Consensus 102 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~-----~p~illL-D 175 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAV-----KPKLIVL-D 175 (265)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-e
Confidence 2211 11110 001111 1234566778877774 33 34444559999999999999994 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+|||+..+. .+.+.|.++.... +.+.|++|+
T Consensus 176 EPt~~LD~~~~~-~l~~~l~~~~~~~---g~tiiivsH 209 (265)
T TIGR02769 176 EAVSNLDMVLQA-VILELLRKLQQAF---GTAYLFITH 209 (265)
T ss_pred CCcccCCHHHHH-HHHHHHHHHHHhc---CcEEEEEeC
Confidence 999999998764 4457777765432 567777776
No 152
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.8e-21 Score=204.53 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=122.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcc----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL---- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l---- 437 (589)
.+|++++|++.+|+ +++|+|||||||||||++|||+++|+.|+|.+.+.++. ++|+++|...+...+
T Consensus 33 ~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e 110 (377)
T PRK11607 33 HAVDDVSLTIYKGE--IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQ 110 (377)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHH
Confidence 47899999999999 99999999999999999999999999999999998752 389999976554443
Q ss_pred --ccceeccCCC-CCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 438 --QVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 438 --~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
...+...... .+....+.++++.+++.++....+ ..||||+||++|+|+|+. +|+++|| |||+++||+..
T Consensus 111 Ni~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~-----~P~lLLL-DEP~s~LD~~~ 184 (377)
T PRK11607 111 NIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK-----RPKLLLL-DEPMGALDKKL 184 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHHH
Confidence 2222111111 112345667778777776544444 459999999999999994 9999998 99999999987
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. .+.+.|..+... .+++.|++|+
T Consensus 185 r~-~l~~~l~~l~~~---~g~tii~vTH 208 (377)
T PRK11607 185 RD-RMQLEVVDILER---VGVTCVMVTH 208 (377)
T ss_pred HH-HHHHHHHHHHHh---cCCEEEEEcC
Confidence 64 444555555443 3688888887
No 153
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=7.5e-21 Score=200.07 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=117.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------------------c
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------------------R 423 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------------------R 423 (589)
.+|++++|++.+|+ +++|+|+||||||||++.|+|+++|+.|+|.+.|.++. +
T Consensus 40 ~~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 40 VALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 48999999999999 99999999999999999999999999999999875531 2
Q ss_pred cchhhhhH-------hhhhccccceeccCCC-CCHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhh
Q 007789 424 SGAVEQLR-------THARRLQVPIFEKGYE-KDPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYL 493 (589)
Q Consensus 424 igaveQL~-------~~~~~l~v~l~~~~~~-~d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~ 493 (589)
+|+++|.. +..+++.+........ .+....+.++++.+++. ++ +..+...||||+||+.|+++|+.
T Consensus 118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~---- 193 (320)
T PRK13631 118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI---- 193 (320)
T ss_pred EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHc----
Confidence 56777753 1122221111111111 11234566677777774 33 34445669999999999999994
Q ss_pred cCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 494 NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 494 ~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|+++|| ||||+|||+..+... .+.|..+... +.+.|++|+
T Consensus 194 -~p~iLLL-DEPtsgLD~~~~~~l-~~~L~~l~~~----g~TiiivtH 234 (320)
T PRK13631 194 -QPEILIF-DEPTAGLDPKGEHEM-MQLILDAKAN----NKTVFVITH 234 (320)
T ss_pred -CCCEEEE-ECCccCCCHHHHHHH-HHHHHHHHHC----CCEEEEEec
Confidence 9999998 999999999987544 4777666532 667777776
No 154
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.84 E-value=9.6e-21 Score=181.13 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=129.4
Q ss_pred cccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------c-cchhhhhHhhhhcc------ccc
Q 007789 374 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------R-SGAVEQLRTHARRL------QVP 440 (589)
Q Consensus 374 Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------R-igaveQL~~~~~~l------~v~ 440 (589)
.++.++.|+ +++|+||+|+||||+|+.|||+..|.+|.|.|++.|.. | +.+++|...+...+ ++.
T Consensus 18 fdl~v~~ge--~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 18 FDLTVPAGE--IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEeecCCc--EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence 445678999 99999999999999999999999999999999999863 2 67888866544444 332
Q ss_pred eeccC-CCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHH
Q 007789 441 IFEKG-YEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 518 (589)
Q Consensus 441 l~~~~-~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 518 (589)
+.... ......+.+..++..+++.++...+..+ |||++||++|||+|.+ +.+++| +|||++.|||.-+.+..
T Consensus 96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR-----~~PilL-LDEPFsALdP~LR~eMl 169 (231)
T COG3840 96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR-----EQPILL-LDEPFSALDPALRAEML 169 (231)
T ss_pred CCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhc-----cCCeEE-ecCchhhcCHHHHHHHH
Confidence 21110 1122345667788889999998888776 9999999999999994 444444 49999999998776444
Q ss_pred HHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 519 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 519 ~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
..+.++..+ ++.|.+++|+.=. +-.. ....++|+..|.-.
T Consensus 170 -~Lv~~l~~E---~~~TllmVTH~~~--Da~~--------ia~~~~fl~~Gri~ 209 (231)
T COG3840 170 -ALVSQLCDE---RKMTLLMVTHHPE--DAAR--------IADRVVFLDNGRIA 209 (231)
T ss_pred -HHHHHHHHh---hCCEEEEEeCCHH--HHHH--------hhhceEEEeCCEEE
Confidence 566666544 4899999998543 2222 23356666666543
No 155
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.1e-21 Score=193.30 Aligned_cols=182 Identities=14% Similarity=0.154 Sum_probs=125.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------c--cchhhhhHhhhhc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------R--SGAVEQLRTHARR-- 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------R--igaveQL~~~~~~-- 436 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.++. | +++++|...+...
T Consensus 19 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 19 LAVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred EEEEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 58999999999999 99999999999999999999999999999999998753 1 4556665432222
Q ss_pred ----ccccee--------ccCC-----C---CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcC
Q 007789 437 ----LQVPIF--------EKGY-----E---KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNN 495 (589)
Q Consensus 437 ----l~v~l~--------~~~~-----~---~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~ 495 (589)
+..... ...+ . ......+.++++.+++... +..+-..||||+|++.|+++|+. +
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~-----~ 171 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVT-----Q 171 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhc-----C
Confidence 211100 0000 0 0112345566777766543 33444559999999999999994 9
Q ss_pred CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 496 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 496 PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
|+++|| ||||+|||+..+. .+.+.|..+... .+.+.|++|+-... + ....--|.++..|+-+
T Consensus 172 p~llll-DEPt~~LD~~~~~-~l~~~L~~~~~~---~~~tii~~sH~~~~------~----~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 172 PEILML-DEPAAGLNPKETK-ELDELIAELRNE---HNVTVLLIEHDMKL------V----MGISDRIYVVNQGTPL 233 (255)
T ss_pred CCEEEE-cCCccCCCHHHHH-HHHHHHHHHHhh---cCCEEEEEeCCHHH------H----HHhCCEEEEEECCeEE
Confidence 999998 9999999999874 444777766543 25677777773221 1 1222356666666654
No 156
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.1e-21 Score=195.63 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=119.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH------ 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~------ 433 (589)
.+|++++|.+.+|+ +++|+|+||+|||||+++|+|+++|++|+|.+.+.++. ++++++|...+
T Consensus 25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (265)
T PRK10575 25 TLLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTV 102 (265)
T ss_pred EEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccH
Confidence 58999999999999 99999999999999999999999999999999997752 27788775422
Q ss_pred hhccccceecc-C----CCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 434 ARRLQVPIFEK-G----YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 434 ~~~l~v~l~~~-~----~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
.+++....+.. . ........+.++++.+++... +..+.+.||||+|++.|+++|+. +|+++|| ||||+
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~-----~p~lllL-DEPt~ 176 (265)
T PRK10575 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ-----DSRCLLL-DEPTS 176 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcc
Confidence 22222111100 0 011123445667777776543 44445569999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+ ..|.+.|.++.... +.+.|++|+
T Consensus 177 ~LD~~~~-~~~~~~l~~l~~~~---~~tiii~sH 206 (265)
T PRK10575 177 ALDIAHQ-VDVLALVHRLSQER---GLTVIAVLH 206 (265)
T ss_pred cCCHHHH-HHHHHHHHHHHHhc---CCEEEEEeC
Confidence 9999976 45557777765432 566777776
No 157
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.83 E-value=6.9e-21 Score=192.38 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=125.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-----CcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-----~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++++|+ +++|+|+||||||||++.|+|+++|+ +|+|.+.+.++. ++++++|...
T Consensus 15 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 15 EALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred eeecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 48999999999999 99999999999999999999999988 999999987652 2677777643
Q ss_pred hh-----hccccceeccC-CC-CCHHHHHHHHHHHhccc----CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 HA-----RRLQVPIFEKG-YE-KDPAIVAKEAIQEATRN----GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~~-----~~l~v~l~~~~-~~-~d~~~ia~~al~~a~l~----~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+. +++.+.....+ .. ......+.++++.+++. .. +..+...||||+|++.|+++|+. +|+++|
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~-----~p~lll 167 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV-----EPEVLL 167 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 22 22221111111 01 11223456677777764 22 33444569999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
| ||||+|||+..+.. +.+.|..+.. ..+.|++|+ |.. ......--|.++..|+-+
T Consensus 168 l-DEPt~~LD~~~~~~-l~~~l~~~~~-----~~tiiivsH-~~~---------~~~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 168 L-DEPTSALDPIATGK-IEELIQELKK-----KYTIVIVTH-NMQ---------QAARISDRTAFFYDGELV 222 (247)
T ss_pred E-eCCcccCCHHHHHH-HHHHHHHHHh-----cCeEEEEec-CHH---------HHHHhCCEEEEEECCEEE
Confidence 8 99999999998754 4477777654 246666666 321 111223356667666654
No 158
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=8.2e-21 Score=195.32 Aligned_cols=160 Identities=21% Similarity=0.245 Sum_probs=119.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------ccchhhhhH--hh--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLR--TH-- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------RigaveQL~--~~-- 433 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. +++++.|.. .+
T Consensus 16 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 16 EALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 48999999999999 99999999999999999999999999999999987641 267888864 11
Q ss_pred ---hhccccceeccCCCC-CHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 434 ---ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 434 ---~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
.+++.......+... .....+.++++.+++.++....+. .||||+|++.|+++|+. +|+++|| ||||+|
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~-----~p~llll-DEPt~g 167 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM-----KPEIIVL-DEPTSG 167 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCcC
Confidence 122211110001111 122456678888887765444454 49999999999999994 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+. .+.+.|..+... +.+.+++|+
T Consensus 168 LD~~~~~-~l~~~l~~l~~~----~~til~vtH 195 (275)
T PRK13639 168 LDPMGAS-QIMKLLYDLNKE----GITIIISTH 195 (275)
T ss_pred CCHHHHH-HHHHHHHHHHHC----CCEEEEEec
Confidence 9999875 444777766532 667777776
No 159
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=7.1e-21 Score=187.57 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=115.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhcc---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRL--- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l--- 437 (589)
.+|++++|++.+| +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...+
T Consensus 14 ~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 14 RALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred EEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence 4899999999885 79999999999999999999999999999999987653 267777765332222
Q ss_pred ---ccceeccCCC-CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 438 ---QVPIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 438 ---~v~l~~~~~~-~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.+........ .+....+.++++.+++..+ +..+-..||||+|++.|+++|+. +|+++|| ||||+|||+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~llll-DEPt~~LD~~ 164 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG-----DPSILIV-DEPTAGLDPE 164 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccCCHH
Confidence 1111111111 1123445667777776543 33444459999999999999995 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+. .+.+.|..+.. ..+.+++|+
T Consensus 165 ~~~-~l~~~l~~~~~-----~~tii~vsH 187 (211)
T cd03264 165 ERI-RFRNLLSELGE-----DRIVILSTH 187 (211)
T ss_pred HHH-HHHHHHHHHhC-----CCEEEEEcC
Confidence 875 44477776653 356677765
No 160
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.83 E-value=1.4e-20 Score=187.83 Aligned_cols=160 Identities=17% Similarity=0.201 Sum_probs=117.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+ .
T Consensus 21 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 98 (225)
T PRK10247 21 KILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY 98 (225)
T ss_pred eeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHH
Confidence 48999999999999 99999999999999999999999999999999987652 36777775432 2
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
+++.+...... .......+.++++.+++.. .+..+...|||++|++.|+++|+. +|+++|| ||||+|||+.
T Consensus 99 enl~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEPt~~LD~~ 171 (225)
T PRK10247 99 DNLIFPWQIRN-QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF-----MPKVLLL-DEITSALDES 171 (225)
T ss_pred HHHHhHHhhcC-CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHH
Confidence 22221110011 1112344566777777642 244445569999999999999995 9999998 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+ ..+.+.|.++.... +.+.+++|+
T Consensus 172 ~~-~~l~~~l~~~~~~~---~~tvii~sh 196 (225)
T PRK10247 172 NK-HNVNEIIHRYVREQ---NIAVLWVTH 196 (225)
T ss_pred HH-HHHHHHHHHHHHhc---CCEEEEEEC
Confidence 76 45557777765432 566677765
No 161
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=9.2e-21 Score=190.58 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=116.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhh---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR--- 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~--- 435 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|++|+|.+.+.++. ++++++|...+..
T Consensus 16 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 16 KALNDLSLYVDPGE--LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred EEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 48999999999999 99999999999999999999999999999999987652 2677777543322
Q ss_pred ---ccccceecc------CCC---CCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 436 ---RLQVPIFEK------GYE---KDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 436 ---~l~v~l~~~------~~~---~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
++....... .++ ......+.++++.+++..... .+...|||++|++.|+++|+. +|+++||
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~-----~p~~lll- 167 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ-----DPKLLLL- 167 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEe-
Confidence 221111000 001 112345567777777765433 334459999999999999994 9999988
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 168 DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sH 200 (242)
T TIGR03411 168 DEPVAGMTDEETE-KTAELLKSLAG-----KHSVVVVEH 200 (242)
T ss_pred cCCccCCCHHHHH-HHHHHHHHHhc-----CCEEEEEEC
Confidence 9999999999874 55577777753 346666666
No 162
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.7e-20 Score=193.76 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=129.4
Q ss_pred ccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-h----CCcEEEEcccccC-------------ccch
Q 007789 365 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-Q----HKVSVMMAACDTF-------------RSGA 426 (589)
Q Consensus 365 ~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-~----~~GkV~l~~~Dt~-------------Riga 426 (589)
...+.++++|||.+.+|+ +++|||.+|||||||...|.+++. + .+|+|.+.|.|++ ++++
T Consensus 15 ~g~v~av~~vs~~i~~GE--~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m 92 (316)
T COG0444 15 AGVVKAVDGVSFELKKGE--ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92 (316)
T ss_pred CccEEEEeceeEEEcCCc--EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEE
Confidence 345789999999999999 999999999999999999999997 3 4689999999773 3788
Q ss_pred hhhhHh--------hhhccccceeccC---CCCCHHHHHHHHHHHhcccCC----CccccccCccccccHHHHHHHHhhh
Q 007789 427 VEQLRT--------HARRLQVPIFEKG---YEKDPAIVAKEAIQEATRNGS----DVVLVDTAGRMQDNEPLMRALSKLI 491 (589)
Q Consensus 427 veQL~~--------~~~~l~v~l~~~~---~~~d~~~ia~~al~~a~l~~~----d~vliDTSGg~qqr~~LaraL~kl~ 491 (589)
++|... ...++.-.+.... ..++..+.+.++++.+++.+. +..+...||||+||+.||.+|+
T Consensus 93 IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala--- 169 (316)
T COG0444 93 IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA--- 169 (316)
T ss_pred EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh---
Confidence 888642 2222211111111 122345667788888887754 5677888999999999999999
Q ss_pred hhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 492 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 492 ~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
++|+++|. ||||++||...|++.+ +.|+++.+. .+.+.++||+
T Consensus 170 --~~P~LlIA-DEPTTALDvt~QaqIl-~Ll~~l~~e---~~~aiilITH 212 (316)
T COG0444 170 --LNPKLLIA-DEPTTALDVTVQAQIL-DLLKELQRE---KGTALILITH 212 (316)
T ss_pred --CCCCEEEe-CCCcchhhHHHHHHHH-HHHHHHHHh---cCCEEEEEeC
Confidence 69999999 9999999999998777 777777763 4888899988
No 163
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=1.3e-20 Score=184.63 Aligned_cols=158 Identities=17% Similarity=0.108 Sum_probs=114.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~-- 438 (589)
.+|++++|++.+|+ +++|+||||+||||+++.|+|+++|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 15 ~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 15 PLLQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLR 92 (200)
T ss_pred eEEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHH
Confidence 48999999999999 99999999999999999999999999999999987652 2555555432211111
Q ss_pred --cceeccCCCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 439 --VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 439 --v~l~~~~~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
+.+... ...+ ...+.++++.+++... +..+...|||++|++.|+++|+. +|+++|| ||||+|+|+..+.
T Consensus 93 ~~~~~~~~-~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~-----~p~~lil-DEP~~~LD~~~~~ 164 (200)
T PRK13540 93 ENCLYDIH-FSPG-AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS-----KAKLWLL-DEPLVALDELSLL 164 (200)
T ss_pred HHHHHHHh-cCcc-hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCcccCHHHHH
Confidence 111000 1111 2345667777666443 33334569999999999999995 9999998 9999999999864
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.|.++... +.+.|++|+
T Consensus 165 -~l~~~l~~~~~~----~~tiii~sh 185 (200)
T PRK13540 165 -TIITKIQEHRAK----GGAVLLTSH 185 (200)
T ss_pred -HHHHHHHHHHHc----CCEEEEEeC
Confidence 555777776432 556666665
No 164
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=7.7e-21 Score=193.01 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=117.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhc---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARR--- 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~--- 436 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.++. ++++++|...+...
T Consensus 16 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 16 RILNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV 93 (255)
T ss_pred EEEeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence 48999999999999 99999999999999999999999999999999987642 27777776533222
Q ss_pred ---cccceec--cCC---CCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 437 ---LQVPIFE--KGY---EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 437 ---l~v~l~~--~~~---~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
+...... ... .......+.++++.+++..+ +..+-+.||||+|++.|+++|+. +|+++|| ||||+
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEP~~ 167 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ-----DTPVVLL-DEPTT 167 (255)
T ss_pred HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcc
Confidence 2111000 001 11123345667777766543 33444559999999999999995 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+. .+.+.|..+... +.+.+++|+
T Consensus 168 ~LD~~~~~-~l~~~l~~l~~~----~~tiii~tH 196 (255)
T PRK11231 168 YLDINHQV-ELMRLMRELNTQ----GKTVVTVLH 196 (255)
T ss_pred cCCHHHHH-HHHHHHHHHHHC----CCEEEEEEC
Confidence 99998764 555777766532 567777776
No 165
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.1e-20 Score=199.60 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=121.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh----hCCcEEEEcccccC-------------ccchhhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL----QHKVSVMMAACDTF-------------RSGAVEQL 430 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~----~~~GkV~l~~~Dt~-------------RigaveQL 430 (589)
..+|++|+|++.+|+ +++|+|+||+|||||++.|+|++. ++.|+|.+.+.++. ++++++|.
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~ 97 (330)
T PRK15093 20 VKAVDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred EEEEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 468999999999999 999999999999999999999986 57899999998752 37888886
Q ss_pred Hhh--------hhccccceec---cC--C-C-CCHHHHHHHHHHHhcccCC----CccccccCccccccHHHHHHHHhhh
Q 007789 431 RTH--------ARRLQVPIFE---KG--Y-E-KDPAIVAKEAIQEATRNGS----DVVLVDTAGRMQDNEPLMRALSKLI 491 (589)
Q Consensus 431 ~~~--------~~~l~v~l~~---~~--~-~-~d~~~ia~~al~~a~l~~~----d~vliDTSGg~qqr~~LaraL~kl~ 491 (589)
... .+++...+.. .+ + . ......+.++++.+++... +..+...||||+||+.||++|+
T Consensus 98 ~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~--- 174 (330)
T PRK15093 98 PQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALA--- 174 (330)
T ss_pred cchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH---
Confidence 531 1111111100 00 0 0 1123456778888877642 3455667999999999999999
Q ss_pred hhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 492 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 492 ~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+|+++|+ ||||+|||+..+...+ +.|.++.+. .+++.|++|+
T Consensus 175 --~~P~llil-DEPts~LD~~~~~~i~-~lL~~l~~~---~g~tii~itH 217 (330)
T PRK15093 175 --NQPRLLIA-DEPTNAMEPTTQAQIF-RLLTRLNQN---NNTTILLISH 217 (330)
T ss_pred --CCCCEEEE-eCCCCcCCHHHHHHHH-HHHHHHHHh---cCCEEEEEEC
Confidence 49999998 9999999999875444 777777643 2678888887
No 166
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.83 E-value=9.2e-21 Score=188.48 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=118.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-----CccchhhhhHhhhhccc----c
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQ----V 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-----~RigaveQL~~~~~~l~----v 439 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++ .++++++|...+...+. +
T Consensus 14 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 14 TAVNNISLTVPKNS--VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENL 91 (223)
T ss_pred EEEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHH
Confidence 48999999999999 9999999999999999999999999999999988654 24677777543322211 1
Q ss_pred ceeccCCCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHH
Q 007789 440 PIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 518 (589)
Q Consensus 440 ~l~~~~~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 518 (589)
.++....+.+ ...+.++++.+++... +..+...|||++|++.|+++|+. +|+++|| ||||+|||+..+ ..|
T Consensus 92 ~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~-----~p~llll-DEP~~~LD~~~~-~~l 163 (223)
T TIGR03740 92 KVHTTLLGLP-DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLN-----HPKLLIL-DEPTNGLDPIGI-QEL 163 (223)
T ss_pred HHHHHHcCCC-HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhc-----CCCEEEE-CCCccCCCHHHH-HHH
Confidence 1111111222 2345667777777653 33444569999999999999995 9999998 999999999976 455
Q ss_pred HHHHHHhhcCCCCCCccEEEEcc
Q 007789 519 NQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 519 ~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.|.++... +.+.+++|+
T Consensus 164 ~~~L~~~~~~----~~tiii~sH 182 (223)
T TIGR03740 164 RELIRSFPEQ----GITVILSSH 182 (223)
T ss_pred HHHHHHHHHC----CCEEEEEcC
Confidence 6777777542 556677766
No 167
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.83 E-value=1.2e-20 Score=192.39 Aligned_cols=166 Identities=19% Similarity=0.176 Sum_probs=117.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH------ 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~------ 433 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.++. +++++.|...+
T Consensus 16 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 16 TLLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 48999999999999 99999999999999999999999999999999987642 26777775433
Q ss_pred hhccccceeccCCC-CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhh-hhcCCCEEEEEecCCCCCC
Q 007789 434 ARRLQVPIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLI-YLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 434 ~~~l~v~l~~~~~~-~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~-~~~~PdlILLVDEPt~GlD 510 (589)
.+++.......... ......+.++++.+++... +..+...|||++|++.|+++|+... ...+|+++|| ||||+|||
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllL-DEPt~~LD 172 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLL-DEPTSALD 172 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE-eCCcccCC
Confidence 22211111111111 1123445677777777543 4445566999999999999998100 0017888888 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+..+. .+.+.|.++... .+.++|++|+
T Consensus 173 ~~~~~-~l~~~l~~~~~~---~~~tiii~sH 199 (258)
T PRK13548 173 LAHQH-HVLRLARQLAHE---RGLAVIVVLH 199 (258)
T ss_pred HHHHH-HHHHHHHHHHHh---cCCEEEEEEC
Confidence 99764 555777776522 2567777776
No 168
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.83 E-value=8.9e-21 Score=189.74 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=116.3
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh----CCcEEEEcccccC-------ccchhhhhHh--hhhc
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTF-------RSGAVEQLRT--HARR 436 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~----~~GkV~l~~~Dt~-------RigaveQL~~--~~~~ 436 (589)
+|++++|++.+|+ +++|+||||+|||||+++|+|+++| ++|+|.+.+.++. +++++.|... +...
T Consensus 1 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGE--VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcc
Confidence 4789999999999 9999999999999999999999998 8999999997752 3778887653 2222
Q ss_pred ccc------ceeccC-CCCCHHHHHHHHHHHhcccC---C-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 437 LQV------PIFEKG-YEKDPAIVAKEAIQEATRNG---S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 437 l~v------~l~~~~-~~~d~~~ia~~al~~a~l~~---~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+.+ .....+ ........+.++++.+++.. . +..+...|||++|++.|+++|+. +|+++|| |||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~vllL-DEP 152 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL-----EPPFLIA-DEP 152 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc-----CCCEEEE-cCC
Confidence 211 110011 11112344567777777652 2 33444559999999999999994 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+|||+..+. .+.+.|.++.... +.+.|++|+
T Consensus 153 t~~LD~~~~~-~l~~~l~~~~~~~---~~tiii~sH 184 (230)
T TIGR02770 153 TTDLDVVNQA-RVLKLLRELRQLF---GTGILLITH 184 (230)
T ss_pred ccccCHHHHH-HHHHHHHHHHHhc---CCEEEEEeC
Confidence 9999998764 5557777765432 556677766
No 169
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.83 E-value=1.1e-20 Score=187.57 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=119.6
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 435 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~~ 435 (589)
..+|++++|.+.+|+ +++|+|+||+|||||++.|+|+++|++|+|.+.+.++. ++++++|...+..
T Consensus 18 ~~il~~vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGE--IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 458999999999999 99999999999999999999999999999999887652 2677777654433
Q ss_pred cccc----ceeccCC-CCC---HHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 436 RLQV----PIFEKGY-EKD---PAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 436 ~l~v----~l~~~~~-~~d---~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
.+.+ .+....+ ... ....+.++++.+++..... .+...||||+|++.|+++|+. +|+++|| ||||
T Consensus 96 ~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~-----~p~illl-DEP~ 169 (220)
T TIGR02982 96 FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH-----RPKLVLA-DEPT 169 (220)
T ss_pred CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCC
Confidence 2211 1111111 111 2234667777777755433 444459999999999999995 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|||+..+. .+...|..+... .+.+.+++|+
T Consensus 170 ~~LD~~~~~-~l~~~l~~~~~~---~~~tii~~sh 200 (220)
T TIGR02982 170 AALDSKSGR-DVVELMQKLARE---QGCTILIVTH 200 (220)
T ss_pred CcCCHHHHH-HHHHHHHHHHHH---cCCEEEEEeC
Confidence 999998864 444677766542 2577777777
No 170
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.7e-21 Score=193.92 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=118.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA----- 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~----- 434 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 21 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 98 (265)
T PRK10253 21 TVAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV 98 (265)
T ss_pred EEeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcH
Confidence 48999999999999 99999999999999999999999999999999987652 377888764332
Q ss_pred -hccccceecc-----CCCCCHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 435 -RRLQVPIFEK-----GYEKDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 435 -~~l~v~l~~~-----~~~~d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
+++....+.. .........+.++++.+++..+. ..+-..|||++|++.|+++|+. +|+++|| ||||+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~-----~p~llll-DEPt~ 172 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ-----ETAIMLL-DEPTT 172 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc-----CCCEEEE-eCccc
Confidence 2221111100 01111223456677777765443 3334459999999999999995 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+. .+.+.|..+... .+.+.|++|+
T Consensus 173 gLD~~~~~-~l~~~L~~l~~~---~~~tiii~tH 202 (265)
T PRK10253 173 WLDISHQI-DLLELLSELNRE---KGYTLAAVLH 202 (265)
T ss_pred cCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 99999874 444777776542 2567777765
No 171
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.8e-20 Score=205.82 Aligned_cols=181 Identities=13% Similarity=0.127 Sum_probs=128.5
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhH--------
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLR-------- 431 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~-------- 431 (589)
+|++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|..
T Consensus 278 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 7999999999999 99999999999999999999999999999999987641 378888852
Q ss_pred -hhhhccccceec--cCC----C----CCHHHHHHHHHHHhccc-CCCccc-cccCccccccHHHHHHHHhhhhhcCCCE
Q 007789 432 -THARRLQVPIFE--KGY----E----KDPAIVAKEAIQEATRN-GSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDL 498 (589)
Q Consensus 432 -~~~~~l~v~l~~--~~~----~----~d~~~ia~~al~~a~l~-~~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~Pdl 498 (589)
+..+++.+.... ..+ + ......+.++++.+++. ...... -+.||||+||+.||++|+. +|++
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~-----~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCC-----CPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhc-----CCCE
Confidence 122222222110 000 1 11223466788888875 443444 4559999999999999994 9999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 499 ILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
+|| ||||+|||+..+. .+.+.|..++.. +.+.|++|+ |.- .+....--|.++..|+-+.
T Consensus 431 LlL-DEPt~~LD~~~~~-~l~~~l~~l~~~----g~tvi~vsH-d~~---------~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 431 IIF-DEPTRGIDVGAKA-EIYKVMRQLADD----GKVILMVSS-ELP---------EIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred EEE-CCCCCCcCHHHHH-HHHHHHHHHHHC----CCEEEEEcC-CHH---------HHHhhCCEEEEEECCEEEE
Confidence 998 9999999999874 444777777542 667788877 321 1122233566666666543
No 172
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.83 E-value=1.1e-20 Score=192.11 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=116.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------------------ccch
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------------------RSGA 426 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------------------Riga 426 (589)
.+|++++|.+.+|+ +++|+|+||+|||||++.|+|+++|+.|+|.+.+.++. ++++
T Consensus 19 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (257)
T PRK10619 19 EVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96 (257)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence 48999999999999 99999999999999999999999999999999987642 2566
Q ss_pred hhhhHhhhhcccc----ceec-cCCCC---CHHHHHHHHHHHhcccCC--CccccccCccccccHHHHHHHHhhhhhcCC
Q 007789 427 VEQLRTHARRLQV----PIFE-KGYEK---DPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNP 496 (589)
Q Consensus 427 veQL~~~~~~l~v----~l~~-~~~~~---d~~~ia~~al~~a~l~~~--d~vliDTSGg~qqr~~LaraL~kl~~~~~P 496 (589)
+.|...+...+.+ .+.. ..... .....+.++++.+++... +..+-..|||++|++.|+++|.. +|
T Consensus 97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~-----~p 171 (257)
T PRK10619 97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM-----EP 171 (257)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhc-----CC
Confidence 6665432222111 1100 00111 123445667777777553 23334459999999999999995 99
Q ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 497 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 497 dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+++|| ||||+|||+..+.. +.+.|..+... +.+.+++|+
T Consensus 172 ~llll-DEPt~~LD~~~~~~-l~~~l~~l~~~----g~tiiivsH 210 (257)
T PRK10619 172 EVLLF-DEPTSALDPELVGE-VLRIMQQLAEE----GKTMVVVTH 210 (257)
T ss_pred CEEEE-eCCcccCCHHHHHH-HHHHHHHHHhc----CCEEEEEeC
Confidence 99998 99999999998754 44777766532 677788877
No 173
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.1e-20 Score=201.22 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=116.7
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhhhcccc
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHARRLQV 439 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~~~l~v 439 (589)
+++|++++|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|...+...+.+
T Consensus 16 ~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQG--ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999 99999999999999999999999999999999886642 37788886544333221
Q ss_pred c-eeccCCCCCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHH
Q 007789 440 P-IFEKGYEKDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 517 (589)
Q Consensus 440 ~-l~~~~~~~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 517 (589)
. ....+........+.++++.+++..+.. .+-..||||+||+.|+++|+. +|+++|| ||||+|||+..+. .
T Consensus 94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~-----~p~llLL-DEPts~LD~~~~~-~ 166 (352)
T PRK11144 94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT-----APELLLM-DEPLASLDLPRKR-E 166 (352)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-cCCcccCCHHHHH-H
Confidence 1 0000011122345677788887765433 444459999999999999995 9999998 9999999998764 4
Q ss_pred HHHHHHHhhcCCCCCCccEEEEcc
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.+.|..+.... +.+.|++|+
T Consensus 167 l~~~L~~l~~~~---g~tii~vTH 187 (352)
T PRK11144 167 LLPYLERLAREI---NIPILYVSH 187 (352)
T ss_pred HHHHHHHHHHhc---CCeEEEEec
Confidence 447777665432 567778776
No 174
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.83 E-value=1.2e-20 Score=199.41 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=121.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC---CcEEEEcccccC-------------ccchhhhhH
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTF-------------RSGAVEQLR 431 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~---~GkV~l~~~Dt~-------------RigaveQL~ 431 (589)
..+|++|+|++.+|+ +++|+|+||+|||||++.|+|++.|. +|+|.+.|.|+. ++++++|..
T Consensus 29 ~~~l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 29 VTAVNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 568999999999999 99999999999999999999999985 999999998862 378888875
Q ss_pred h--hhhcccc------ceecc-CCC-CCHHHHHHHHHHHhcccCC----CccccccCccccccHHHHHHHHhhhhhcCCC
Q 007789 432 T--HARRLQV------PIFEK-GYE-KDPAIVAKEAIQEATRNGS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 497 (589)
Q Consensus 432 ~--~~~~l~v------~l~~~-~~~-~d~~~ia~~al~~a~l~~~----d~vliDTSGg~qqr~~LaraL~kl~~~~~Pd 497 (589)
. +...+.+ .+... ... .+....+.++++.+++.+. +..+...||||+||+.||++|+ .+|+
T Consensus 107 ~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~-----~~P~ 181 (330)
T PRK09473 107 MTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALL-----CRPK 181 (330)
T ss_pred hhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHH-----cCCC
Confidence 2 2222211 11111 111 1223456667777766431 2345566999999999999999 4999
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 498 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 498 lILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
++|+ ||||+|||+..+...+ +.|.++.+. .+.+.+++|+
T Consensus 182 llil-DEPts~LD~~~~~~i~-~lL~~l~~~---~g~til~iTH 220 (330)
T PRK09473 182 LLIA-DEPTTALDVTVQAQIM-TLLNELKRE---FNTAIIMITH 220 (330)
T ss_pred EEEE-eCCCccCCHHHHHHHH-HHHHHHHHH---cCCEEEEEEC
Confidence 9999 9999999999886554 677777653 2678888887
No 175
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.83 E-value=1.1e-20 Score=192.33 Aligned_cols=161 Identities=22% Similarity=0.228 Sum_probs=116.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc-----cC-------------ccchhhhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-----TF-------------RSGAVEQL 430 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D-----t~-------------RigaveQL 430 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++|+.|+|.+.+.+ +. ++++++|.
T Consensus 20 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 20 KGCRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred eeeeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 48999999999999 999999999999999999999999999999999977 42 26677776
Q ss_pred Hhh--------hhccccceeccCC-C-CCHHHHHHHHHHHhcccC-C-CccccccCccccccHHHHHHHHhhhhhcCCCE
Q 007789 431 RTH--------ARRLQVPIFEKGY-E-KDPAIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 498 (589)
Q Consensus 431 ~~~--------~~~l~v~l~~~~~-~-~d~~~ia~~al~~a~l~~-~-d~vliDTSGg~qqr~~LaraL~kl~~~~~Pdl 498 (589)
... .+++...+..... . ......+.++++.+++.. . +..+-..||||+|++.|+++|+. +|++
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~-----~p~l 172 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVT-----HPRL 172 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhc-----CCCE
Confidence 421 1111111100000 0 112334566777776642 2 34444559999999999999994 9999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 499 ILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|| ||||+|||+..+. .+.+.|..+.... +.+.|++|+
T Consensus 173 lll-DEPt~~LD~~~~~-~l~~~l~~~~~~~---~~tii~isH 210 (258)
T PRK11701 173 VFM-DEPTGGLDVSVQA-RLLDLLRGLVREL---GLAVVIVTH 210 (258)
T ss_pred EEE-cCCcccCCHHHHH-HHHHHHHHHHHhc---CcEEEEEeC
Confidence 998 9999999998764 4446776665432 667778777
No 176
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.5e-20 Score=188.26 Aligned_cols=158 Identities=13% Similarity=0.126 Sum_probs=116.2
Q ss_pred cccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhh------hccc
Q 007789 372 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHA------RRLQ 438 (589)
Q Consensus 372 ~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~------~~l~ 438 (589)
.+++|++.+|+ +++|+||||+|||||++.|+|++.|++|+|.+.+.++. ++++++|...+. +++.
T Consensus 16 ~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 16 MRFDLTVERGE--RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred ceeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 37999999999 99999999999999999999999999999999987652 377888765332 2222
Q ss_pred cceecc-CCCCCHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 439 VPIFEK-GYEKDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 439 v~l~~~-~~~~d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
.++... .........+.++++.+++..+. ..+...||||+|++.|+++|+. +|+++|| ||||+|||+..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lllL-DEP~~gLD~~~~~- 166 (232)
T PRK10771 94 LGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVR-----EQPILLL-DEPFSALDPALRQ- 166 (232)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHHHHH-
Confidence 222111 01112234566777777765443 3444559999999999999995 9999998 9999999999864
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.|.++.... +.+.|++|+
T Consensus 167 ~~~~~l~~~~~~~---~~tiii~sH 188 (232)
T PRK10771 167 EMLTLVSQVCQER---QLTLLMVSH 188 (232)
T ss_pred HHHHHHHHHHHhc---CCEEEEEEC
Confidence 4447777765422 556677766
No 177
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.4e-20 Score=193.80 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=118.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh--h----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT--H---- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~--~---- 433 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.|.++. ++|+++|... +
T Consensus 21 ~~l~~v~l~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (277)
T PRK13642 21 NQLNGVSFSITKGE--WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT 98 (277)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCC
Confidence 48999999999999 99999999999999999999999999999999987752 2688888642 1
Q ss_pred -hhccccceeccCCCC-CHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 434 -ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 434 -~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
.+++........... .....+.++++.+++.++....+ ..||||+|++.|+++|+. +|+++|| ||||+|||
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~-----~p~llll-DEPt~~LD 172 (277)
T PRK13642 99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL-----RPEIIIL-DESTSMLD 172 (277)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccCC
Confidence 222211111111111 11234566777777655433344 459999999999999995 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+..+. .|.+.|..+... .+.+.+++|+
T Consensus 173 ~~~~~-~l~~~l~~l~~~---~g~tiil~sH 199 (277)
T PRK13642 173 PTGRQ-EIMRVIHEIKEK---YQLTVLSITH 199 (277)
T ss_pred HHHHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 99874 555777777543 2667777776
No 178
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.1e-20 Score=205.20 Aligned_cols=193 Identities=14% Similarity=0.130 Sum_probs=133.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHh---h--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRT---H-- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~---~-- 433 (589)
.++++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++++++|.+. +
T Consensus 267 ~~l~~isl~i~~Ge--~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGE--IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCc--EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 37899999999999 99999999999999999999999999999999886642 3678888652 2
Q ss_pred ----hhccccceecc----C--CCC-CHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 434 ----ARRLQVPIFEK----G--YEK-DPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 434 ----~~~l~v~l~~~----~--~~~-d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
.+++....... + +.. .....+.++++.+++. .. +..+-+.||||+||+.||++|+. +|+++|
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~-----~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE-----DMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc-----CCCEEE
Confidence 22222211110 0 011 1123466778887773 33 34444559999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc--cccCC
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--DLKKL 578 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~--DL~~~ 578 (589)
| ||||+|||+..+...+ +.|.++... +.+.|++|+ |.- .+....--|.++..|+-+. +.+.+
T Consensus 420 L-DEPt~~LD~~~~~~l~-~~l~~l~~~----g~tviivsH-d~~---------~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 L-DEPTRGIDVGAKHEIY-NVIYELAAQ----GVAVLFVSS-DLP---------EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred E-cCCCCCCCHhHHHHHH-HHHHHHHhC----CCEEEEECC-CHH---------HHHhhCCEEEEEECCEEEEEEccccC
Confidence 8 9999999999875444 777777643 667788887 321 1112233455666665443 34455
Q ss_pred CHHHHH
Q 007789 579 NVKSIV 584 (589)
Q Consensus 579 ~~~~~v 584 (589)
....++
T Consensus 484 ~~~~~~ 489 (501)
T PRK11288 484 TERQAL 489 (501)
T ss_pred CHHHHH
Confidence 555554
No 179
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=1.5e-20 Score=209.26 Aligned_cols=159 Identities=12% Similarity=0.093 Sum_probs=120.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~l~ 438 (589)
.+|++++|.+.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|...+...+.
T Consensus 25 ~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 102 (510)
T PRK15439 25 EVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLS 102 (510)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCc
Confidence 48999999999999 99999999999999999999999999999999987652 2678888653332221
Q ss_pred c----ceeccCCCCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 439 V----PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 439 v----~l~~~~~~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
+ .+... ........+.++++.+++..+....+ ..||||+||+.|+++|+. +|+++|| ||||+|||+..
T Consensus 103 v~e~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~-----~p~lllL-DEPt~~LD~~~ 175 (510)
T PRK15439 103 VKENILFGLP-KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR-----DSRILIL-DEPTASLTPAE 175 (510)
T ss_pred HHHHhhcccc-cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-ECCCCCCCHHH
Confidence 1 11111 11122345667788888765544444 459999999999999994 9999998 99999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. .+.+.|.++... +.+.|++|+
T Consensus 176 ~~-~l~~~l~~~~~~----g~tiiivtH 198 (510)
T PRK15439 176 TE-RLFSRIRELLAQ----GVGIVFISH 198 (510)
T ss_pred HH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 74 444777777543 567777777
No 180
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.83 E-value=2e-20 Score=186.04 Aligned_cols=162 Identities=19% Similarity=0.215 Sum_probs=117.6
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc--cc--cc-------------Cccchhhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--AC--DT-------------FRSGAVEQL 430 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~--~~--Dt-------------~RigaveQL 430 (589)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+. +. ++ .++++++|.
T Consensus 21 ~~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 458999999999999 999999999999999999999999999999997 32 32 136788876
Q ss_pred Hhhhhcc------ccceeccCCCC-CHHHHHHHHHHHhcccC-C-CccccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 431 RTHARRL------QVPIFEKGYEK-DPAIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 431 ~~~~~~l------~v~l~~~~~~~-d~~~ia~~al~~a~l~~-~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
..+...+ ...+...+... .....+.++++.+++.. + +..+...|||++|++.|+++|.. +|+++||
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~-----~p~llll 173 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIA-----DYPILLL 173 (224)
T ss_pred cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE
Confidence 5433222 11111111111 12345566777777654 2 33444559999999999999995 9999998
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
||||+|||+..+. .+.+.|..+... +.+.+++|+-
T Consensus 174 -DEPt~~LD~~~~~-~l~~~l~~~~~~----g~tii~vsH~ 208 (224)
T TIGR02324 174 -DEPTASLDAANRQ-VVVELIAEAKAR----GAALIGIFHD 208 (224)
T ss_pred -cCCcccCCHHHHH-HHHHHHHHHHhc----CCEEEEEeCC
Confidence 9999999998764 455777766532 5677777763
No 181
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.83 E-value=1.3e-20 Score=200.69 Aligned_cols=157 Identities=20% Similarity=0.152 Sum_probs=116.5
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhhhcccc
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHARRLQV 439 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~~~l~v 439 (589)
+++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++++++|...+...+.+
T Consensus 15 ~isl~i~~Ge--i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQG--VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999 99999999999999999999999999999999887642 26788876533332211
Q ss_pred ----ceeccCCC-CCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 440 ----PIFEKGYE-KDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 440 ----~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
.+...... .+....+.++++.+++..+....+ ..||||+||+.|+++|+. +|+++|| ||||+|||+..
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~-----~p~lllL-DEPts~LD~~~ 166 (354)
T TIGR02142 93 RGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLS-----SPRLLLM-DEPLAALDDPR 166 (354)
T ss_pred HHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-cCCCcCCCHHH
Confidence 11111111 122334677788877765444444 459999999999999994 9999998 99999999997
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. .+.+.|.++.... +.+.|++|+
T Consensus 167 ~~-~l~~~L~~l~~~~---g~tiiivtH 190 (354)
T TIGR02142 167 KY-EILPYLERLHAEF---GIPILYVSH 190 (354)
T ss_pred HH-HHHHHHHHHHHhc---CCEEEEEec
Confidence 64 4447777765432 567777776
No 182
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.7e-20 Score=190.96 Aligned_cols=159 Identities=20% Similarity=0.284 Sum_probs=113.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++ |+.|+|.+.+.++. ++++++|...
T Consensus 27 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 27 EAVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred EEEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 48999999999999 999999999999999999999987 58999999987642 3778877543
Q ss_pred h-----hhccccceeccCCCCCHHHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 433 H-----ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+ .+++.+.....+........+.++++.+++. . .+..+-..||||+|++.|+++|.. +|+++||
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~-----~p~lllL- 178 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI-----EPEVILM- 178 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 2 2222211111111111223445566666542 1 233334459999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|.++.. +.+.|++|+
T Consensus 179 DEPt~gLD~~~~~-~l~~~l~~~~~-----~~tiiivtH 211 (269)
T PRK14259 179 DEPCSALDPISTL-KIEETMHELKK-----NFTIVIVTH 211 (269)
T ss_pred cCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 9999999998764 44477776642 356677766
No 183
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.4e-20 Score=194.29 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=118.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCC---cEEEEcccccC---------ccchhhhhHh----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK---VSVMMAACDTF---------RSGAVEQLRT---- 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~---GkV~l~~~Dt~---------RigaveQL~~---- 432 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+. |+|.+.+.++. ++|+++|...
T Consensus 21 ~~l~~v~l~i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~ 98 (282)
T PRK13640 21 PALNDISFSIPRGS--WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFV 98 (282)
T ss_pred cceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhc
Confidence 48999999999999 999999999999999999999999987 89999987752 3678777642
Q ss_pred ---hhhccccceeccCCCCCH---HHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 433 ---HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 433 ---~~~~l~v~l~~~~~~~d~---~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
..+++... ...++... ...+.++++.+++..+.. .+...||||+|++.|+++|+. +|+++|| |||
T Consensus 99 ~~tv~enl~~~--~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~-----~P~llll-DEP 170 (282)
T PRK13640 99 GATVGDDVAFG--LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV-----EPKIIIL-DES 170 (282)
T ss_pred cCCHHHHHHhh--HHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-ECC
Confidence 12222111 11112222 234566777777765433 444559999999999999995 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+|||+..+. .+.+.|..+... .+.+.+++|+
T Consensus 171 t~gLD~~~~~-~l~~~l~~l~~~---~g~tvli~tH 202 (282)
T PRK13640 171 TSMLDPAGKE-QILKLIRKLKKK---NNLTVISITH 202 (282)
T ss_pred cccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEec
Confidence 9999999875 444777766542 2667777776
No 184
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.9e-20 Score=204.81 Aligned_cols=161 Identities=14% Similarity=0.194 Sum_probs=119.4
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-hCCcEEEEcccccC----------ccchhhhhHh---h
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTF----------RSGAVEQLRT---H 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-~~~GkV~l~~~Dt~----------RigaveQL~~---~ 433 (589)
..+|++++|++++|+ +++|+||||||||||+++|+|+++ |++|+|.+.+.++. ++++++|... +
T Consensus 275 ~~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 352 (506)
T PRK13549 275 IKRVDDVSFSLRRGE--ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGI 352 (506)
T ss_pred cccccceeeEEcCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCC
Confidence 358999999999999 999999999999999999999998 59999999887642 2788888642 1
Q ss_pred ------hhccccceeccCC-----CC-CHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 434 ------ARRLQVPIFEKGY-----EK-DPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 434 ------~~~l~v~l~~~~~-----~~-d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
.+++.+..+.... .. .....+.++++.+++. .. +..+-+.||||+||+.||++|+. +|+++
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~-----~p~ll 427 (506)
T PRK13549 353 VPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLL-----NPKIL 427 (506)
T ss_pred cCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhh-----CCCEE
Confidence 2222221111000 11 1224567788888875 33 44444559999999999999994 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|| ||||+|||+..+... .+.|..+... +.++|++|+
T Consensus 428 lL-DEPt~~LD~~~~~~l-~~~l~~l~~~----g~tvi~~sH 463 (506)
T PRK13549 428 IL-DEPTRGIDVGAKYEI-YKLINQLVQQ----GVAIIVISS 463 (506)
T ss_pred EE-cCCCCCcCHhHHHHH-HHHHHHHHHC----CCEEEEECC
Confidence 98 999999999987544 4777777643 677788887
No 185
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=9.1e-21 Score=187.34 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=113.3
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhhhcccc
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHARRLQV 439 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~~~l~v 439 (589)
+++|++.+ + +++|+||||+|||||++.|+|+++|++|+|.+.+.++. +++++.|...+...+.+
T Consensus 16 ~vsl~i~~-e--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-E--VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-e--eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 89999999 9 99999999999999999999999999999999887642 36777776433222111
Q ss_pred ----ceeccCCC-CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 440 ----PIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 440 ----~l~~~~~~-~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
.+....+. ......+.++++.+++... +..+...||||+|++.|+++|+. +|+++|| ||||+|||+..
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~llll-DEPt~~LD~~~ 166 (214)
T cd03297 93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA-----QPELLLL-DEPFSALDRAL 166 (214)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccCCHHH
Confidence 11111111 1122345667777776543 33344559999999999999994 9999998 99999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. .+.+.+.++.... +.+.+++|+
T Consensus 167 ~~-~l~~~l~~~~~~~---~~tiii~sH 190 (214)
T cd03297 167 RL-QLLPELKQIKKNL---NIPVIFVTH 190 (214)
T ss_pred HH-HHHHHHHHHHHHc---CcEEEEEec
Confidence 64 4557777775432 567777776
No 186
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=1.3e-19 Score=170.52 Aligned_cols=197 Identities=19% Similarity=0.220 Sum_probs=147.6
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc---------------CccchhhhhHh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------------FRSGAVEQLRT 432 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt---------------~RigaveQL~~ 432 (589)
..+|-||++..+.|+ .+.++||+|+||||+++.|.-+-.|.+|...|++... ..+|+|+|...
T Consensus 15 ~q~lfdi~l~~~~ge--tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~ 92 (242)
T COG4161 15 HQALFDITLDCPEGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92 (242)
T ss_pred chheeeeeecCCCCC--EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence 357889999999999 9999999999999999999999999999999987543 12677777554
Q ss_pred hhhcc-------ccceeccCCCCC-HHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 433 HARRL-------QVPIFEKGYEKD-PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 433 ~~~~l-------~v~l~~~~~~~d-~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
+...+ ..|..-.+..++ +...+.+.++++.+..+ |..+...|||+|||++|+|+|+ ++|+++|| |
T Consensus 93 lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm-----mkpqvllf-d 166 (242)
T COG4161 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM-----MEPQVLLF-D 166 (242)
T ss_pred cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh-----cCCcEEee-c
Confidence 44433 223222233332 34567778888888765 6677888999999999999999 69999999 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc--c---ccCC
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--D---LKKL 578 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~--D---L~~~ 578 (589)
|||+.|||.-.++.. .++++++.. ||+-+|+|+-=++ ...+.-.|+|+-.|.-++ | +...
T Consensus 167 eptaaldpeitaqvv-~iikel~~t----gitqvivthev~v----------a~k~as~vvyme~g~ive~g~a~~ft~p 231 (242)
T COG4161 167 EPTAALDPEITAQIV-SIIKELAET----GITQVIVTHEVEV----------ARKTASRVVYMENGHIVEQGDASCFTEP 231 (242)
T ss_pred CcccccCHHHHHHHH-HHHHHHHhc----CceEEEEEeehhH----------HHhhhhheEeeecCeeEeecchhhccCc
Confidence 999999998766555 777777654 8999999872222 233445788999888875 3 4444
Q ss_pred CHHHHHHHh
Q 007789 579 NVKSIVKTL 587 (589)
Q Consensus 579 ~~~~~v~~L 587 (589)
..+.|.+.|
T Consensus 232 ~te~f~~yl 240 (242)
T COG4161 232 QTEAFKNYL 240 (242)
T ss_pred cHHHHHHHh
Confidence 455666554
No 187
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=1.2e-20 Score=186.91 Aligned_cols=154 Identities=22% Similarity=0.160 Sum_probs=110.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA----- 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~----- 434 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. +++++.|...+.
T Consensus 18 ~~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 95 (220)
T cd03245 18 PALDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLR 95 (220)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHH
Confidence 48999999999999 99999999999999999999999999999999887641 367777764322
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcccCCCc------------cccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDV------------VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~------------vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.. ... ... ...+.++++.+++.+... .....||||+||+.|+++|+. +|+++||
T Consensus 96 e~l~~--~~~--~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~-----~p~llll- 164 (220)
T cd03245 96 DNITL--GAP--LAD-DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN-----DPPILLL- 164 (220)
T ss_pred HHhhc--CCC--CCC-HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 22111 100 111 223344555544432211 123569999999999999994 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|.++.. ..+.|++|+
T Consensus 165 DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sH 197 (220)
T cd03245 165 DEPTSAMDMNSEE-RLKERLRQLLG-----DKTLIIITH 197 (220)
T ss_pred eCccccCCHHHHH-HHHHHHHHhcC-----CCEEEEEeC
Confidence 9999999999874 44477766643 246666665
No 188
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.9e-20 Score=204.15 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=119.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh--CCcEEEEcccccC----------ccchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTF----------RSGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~--~~GkV~l~~~Dt~----------RigaveQL~~~~~~ 436 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++| +.|+|.+.+.++. ++|+++|...+...
T Consensus 19 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 19 KALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred EeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 58999999999999 9999999999999999999999986 7999999987651 37888886543322
Q ss_pred c------ccceecc--C-CCC-CHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 437 L------QVPIFEK--G-YEK-DPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 437 l------~v~l~~~--~-~~~-d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+ .+..... . ... .....+.++++.+++.......+ ..||||+||+.||++|+. +|+++|| |||
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~-----~p~lllL-DEP 170 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK-----QARLLIL-DEP 170 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCC
Confidence 2 2211111 0 111 12245677888888765444444 449999999999999994 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+|||+..+...+ +.|.++... +.+.|++|+
T Consensus 171 t~~LD~~~~~~l~-~~l~~l~~~----~~tvi~~tH 201 (506)
T PRK13549 171 TASLTESETAVLL-DIIRDLKAH----GIACIYISH 201 (506)
T ss_pred CCCCCHHHHHHHH-HHHHHHHHC----CCEEEEEeC
Confidence 9999999875444 777777532 567777776
No 189
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.4e-20 Score=188.80 Aligned_cols=159 Identities=19% Similarity=0.139 Sum_probs=113.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARR-- 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~-- 436 (589)
.+|++++|.+.+|+ +++|+||||+|||||++.|+|+++|++|+|.+.+.++. +++++.|...+...
T Consensus 19 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 19 QALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 48999999999999 99999999999999999999999999999999987652 26677775433222
Q ss_pred ----cccceeccCCCCCHHHHHHHHHHHh-cccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 437 ----LQVPIFEKGYEKDPAIVAKEAIQEA-TRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 437 ----l~v~l~~~~~~~d~~~ia~~al~~a-~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
+....+.. ........+.++++.+ .+... +..+-..||||+|++.|+++|+. +|+++|| ||||+|||
T Consensus 97 v~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~illl-DEPt~~LD 169 (237)
T PRK11614 97 VEENLAMGGFFA-ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS-----QPRLLLL-DEPSLGLA 169 (237)
T ss_pred HHHHHHHhhhcc-ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh-----CCCEEEE-cCccccCC
Confidence 21111100 0111123344455554 23322 23333459999999999999995 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+..+. .+.+.|.++.+. +.+.|++|+
T Consensus 170 ~~~~~-~l~~~l~~~~~~----~~tiii~sH 195 (237)
T PRK11614 170 PIIIQ-QIFDTIEQLREQ----GMTIFLVEQ 195 (237)
T ss_pred HHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 98764 555777777543 567777776
No 190
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.82 E-value=1.6e-20 Score=208.51 Aligned_cols=160 Identities=16% Similarity=0.105 Sum_probs=119.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhcc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~l- 437 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|...+...+
T Consensus 18 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 18 KALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred EEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 58999999999999 99999999999999999999999999999999987652 378888865333222
Q ss_pred -----ccceec-cCCC-CC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 438 -----QVPIFE-KGYE-KD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 438 -----~v~l~~-~~~~-~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
...... ..+. .+ ....+.++++.+++.......+ +.||||+|++.||++|+. +|+++|| ||||
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~lllL-DEPt 169 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF-----ESKVIIM-DEPT 169 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCc
Confidence 211110 0011 11 1245667788887765544444 459999999999999994 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|||+..+. .+.+.|..+... +.+.|++|+
T Consensus 170 ~~LD~~~~~-~l~~~l~~l~~~----~~tvii~sH 199 (501)
T PRK10762 170 DALTDTETE-SLFRVIRELKSQ----GRGIVYISH 199 (501)
T ss_pred CCCCHHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 999999875 444677777542 566777776
No 191
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.82 E-value=1.9e-20 Score=187.03 Aligned_cols=158 Identities=21% Similarity=0.138 Sum_probs=112.7
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCcc----chhhhhHhhhhccccceec
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----GAVEQLRTHARRLQVPIFE 443 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Ri----gaveQL~~~~~~l~v~l~~ 443 (589)
..+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.+.+.. +..+. .+..+++.....
T Consensus 35 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~-~tv~enl~~~~~- 110 (224)
T cd03220 35 FWALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPE-LTGRENIYLNGR- 110 (224)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCC-CcHHHHHHHHHH-
Confidence 358999999999999 9999999999999999999999999999999998875421 11111 122222221111
Q ss_pred cCCCCCH---HHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHH
Q 007789 444 KGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 519 (589)
Q Consensus 444 ~~~~~d~---~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 519 (589)
.++... ...+.++++.+++... +..+-..|||++|++.|+++|.. +|+++|| ||||+|||+..+. .+.
T Consensus 111 -~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~-----~p~llll-DEP~~gLD~~~~~-~~~ 182 (224)
T cd03220 111 -LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATAL-----EPDILLI-DEVLAVGDAAFQE-KCQ 182 (224)
T ss_pred -HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHHHHH-HHH
Confidence 011111 2345566777666544 33344559999999999999995 9999998 9999999998864 444
Q ss_pred HHHHHhhcCCCCCCccEEEEcc
Q 007789 520 QKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 520 ~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.|..+... +.+.|++|+
T Consensus 183 ~~l~~~~~~----~~tiii~sH 200 (224)
T cd03220 183 RRLRELLKQ----GKTVILVSH 200 (224)
T ss_pred HHHHHHHhC----CCEEEEEeC
Confidence 677766532 556677766
No 192
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.3e-20 Score=191.27 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=117.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh-hh----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-HA---- 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~-~~---- 434 (589)
.+|++++|.+.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|... +.
T Consensus 23 ~~l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 100 (269)
T PRK13648 23 FTLKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100 (269)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc
Confidence 48999999999999 99999999999999999999999999999999987752 3677777642 11
Q ss_pred --hccccceeccCCCC-CHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 435 --RRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 435 --~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
+++........... .....+.++++.+++..+ +..+...|||++|++.|+++|.. +|+++|| ||||+|||
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-----~p~lllL-DEPt~~LD 174 (269)
T PRK13648 101 VKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL-----NPSVIIL-DEATSMLD 174 (269)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccCC
Confidence 11111110011111 112345567777776543 34445569999999999999994 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+..+. .+.+.|.++... .+.+.|++|+
T Consensus 175 ~~~~~-~l~~~L~~~~~~---~~~tiiivtH 201 (269)
T PRK13648 175 PDARQ-NLLDLVRKVKSE---HNITIISITH 201 (269)
T ss_pred HHHHH-HHHHHHHHHHHh---cCCEEEEEec
Confidence 99874 444777766542 2567777776
No 193
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.3e-20 Score=186.95 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=119.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcc----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL---- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l---- 437 (589)
.+|+++++++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.++. +++++.|.......+
T Consensus 14 ~il~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 14 VALDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred eeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH
Confidence 48999999999999 99999999999999999999999999999999987653 367777764332222
Q ss_pred --ccceeccCCC-CCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 438 --QVPIFEKGYE-KDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 438 --~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
.......+.. ......+.++++.+++..+.. .+...|||++|++.|+++|.. +|+++|| ||||+|||+..
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~-----~p~llll-DEP~~gLD~~~ 165 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN-----EPKVLLL-DEPLGALDLKL 165 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccCCHHH
Confidence 1111111111 112234556777777765433 444559999999999999995 9999998 99999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+ ..|.+.|.++.... +.+.+++|+
T Consensus 166 ~-~~l~~~l~~~~~~~---~~tiii~sh 189 (232)
T cd03300 166 R-KDMQLELKRLQKEL---GITFVFVTH 189 (232)
T ss_pred H-HHHHHHHHHHHHHc---CCEEEEEeC
Confidence 6 45667787776432 567777776
No 194
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.9e-20 Score=208.27 Aligned_cols=160 Identities=11% Similarity=0.046 Sum_probs=120.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhh----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHA---- 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~---- 434 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+.
T Consensus 19 ~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (510)
T PRK09700 19 HALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELT 96 (510)
T ss_pred EEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCc
Confidence 48999999999999 99999999999999999999999999999999987652 378888865332
Q ss_pred --hccccceecc--CCC------CCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 435 --RRLQVPIFEK--GYE------KDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 435 --~~l~v~l~~~--~~~------~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
+++.+..+.. .++ .+....+.++++.+++.......+. .||||+||+.||++|+. +|+++|| |
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~-----~p~lllL-D 170 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML-----DAKVIIM-D 170 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-e
Confidence 2222211100 011 1123456677888877655444454 49999999999999995 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+|||+..+.. +.+.|.++... +.+.|++|+
T Consensus 171 EPt~~LD~~~~~~-l~~~l~~l~~~----g~tiiivsH 203 (510)
T PRK09700 171 EPTSSLTNKEVDY-LFLIMNQLRKE----GTAIVYISH 203 (510)
T ss_pred CCCCCCCHHHHHH-HHHHHHHHHhC----CCEEEEEeC
Confidence 9999999998754 44777777543 567777776
No 195
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.82 E-value=2.4e-20 Score=189.01 Aligned_cols=163 Identities=20% Similarity=0.167 Sum_probs=113.8
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh------h
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH------A 434 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~------~ 434 (589)
+|++++|++.+|+ +++|+|+||+|||||+++|+|+++ ..|+|.+.+.++. ++++++|...+ .
T Consensus 11 ~l~~vsl~i~~Ge--i~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGE--ILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6899999999999 999999999999999999999985 5899999998763 25677775422 2
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhh--hcCCCEEEEEecCCCCCCH
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIY--LNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~--~~~PdlILLVDEPt~GlD~ 511 (589)
+++.+..............+.++++.+++... +..+-..||||+|++.|+++|+.-.. ..+|+++|| ||||+|||+
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll-DEPt~~LD~ 166 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL-DEPMNSLDV 166 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE-cCCcccCCH
Confidence 22221111001111123456677887777544 33344559999999999999982000 004588887 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+. .+.+.|..+... +.+.|++|+
T Consensus 167 ~~~~-~l~~~L~~~~~~----~~tvi~~sH 191 (248)
T PRK03695 167 AQQA-ALDRLLSELCQQ----GIAVVMSSH 191 (248)
T ss_pred HHHH-HHHHHHHHHHhC----CCEEEEEec
Confidence 9764 555777776532 567777776
No 196
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.3e-20 Score=188.74 Aligned_cols=159 Identities=20% Similarity=0.212 Sum_probs=115.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC---------ccchhhhhHhhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF---------RSGAVEQLRTHA 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~---------RigaveQL~~~~ 434 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++| +.|+|.+.+.++. ++|+++|...+.
T Consensus 17 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 17 EVLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 48999999999999 9999999999999999999999874 6999999998753 367888765322
Q ss_pred ------hccccceeccCCC---CCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 435 ------RRLQVPIFEKGYE---KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 435 ------~~l~v~l~~~~~~---~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+++.+........ .+....+.++++.+++.. .+..+...||||+|++.|+++|+. +|+++|
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~-----~p~lll 169 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF-----QPEVLL 169 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 2221111111110 111234566777766532 234445569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. +.+.+++|+
T Consensus 170 L-DEP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sH 203 (250)
T PRK14247 170 A-DEPTANLDPENTA-KIESLFLELKK-----DMTIVLVTH 203 (250)
T ss_pred E-cCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 8 9999999999864 44466766642 456677766
No 197
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.5e-20 Score=188.73 Aligned_cols=159 Identities=20% Similarity=0.243 Sum_probs=113.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|++. |+.|+|.+.+.++. +++++.|...
T Consensus 20 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 20 QALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred eeecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 48999999999999 999999999999999999999864 57999999987652 2677777542
Q ss_pred h-----hhccccceeccCCCC--CHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGYEK--DPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~--d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
. .+++.+.....+... .....+.++++.+++.. .+..+...||||+|++.|+++|+. +|+++|
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~-----~p~lll 172 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV-----EPEVLL 172 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 2 222221111111111 11234555666666532 133344569999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|.++.. +.+.+++|+
T Consensus 173 l-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tvii~tH 206 (253)
T PRK14242 173 M-DEPASALDPIATQ-KIEELIHELKA-----RYTIIIVTH 206 (253)
T ss_pred E-eCCcccCCHHHHH-HHHHHHHHHhc-----CCeEEEEEe
Confidence 8 9999999998764 44477777642 356667665
No 198
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.82 E-value=2.4e-20 Score=187.37 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=115.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH--hhCCcEEEEcccccC--------c--cchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF--------R--SGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll--~~~~GkV~l~~~Dt~--------R--igaveQL~~~~~~ 436 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|++ +|+.|+|.+.+.++. + ++++.|.......
T Consensus 14 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 14 EILKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred EEEeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 48999999999999 99999999999999999999995 689999999987652 1 5667776433222
Q ss_pred ccc------ceec-cC------CC-CCHHHHHHHHHHHhccc-CC-Ccccc-ccCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 437 LQV------PIFE-KG------YE-KDPAIVAKEAIQEATRN-GS-DVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 437 l~v------~l~~-~~------~~-~d~~~ia~~al~~a~l~-~~-d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
+.+ .... .. .. .+....+.++++.+++. .+ +..+. ..||||+|++.|+++|+. +|+++
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~ll 166 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL-----EPKLA 166 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc-----CCCEE
Confidence 111 1000 00 00 11123456677777775 33 33333 379999999999999995 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|| ||||+|||+..+. .+.+.|..+... +.+.|++|+
T Consensus 167 ll-DEPt~~LD~~~~~-~l~~~l~~~~~~----~~tvi~vsH 202 (243)
T TIGR01978 167 IL-DEIDSGLDIDALK-IVAEGINRLREP----DRSFLIITH 202 (243)
T ss_pred Ee-cCCcccCCHHHHH-HHHHHHHHHHHC----CcEEEEEEe
Confidence 98 9999999998764 555777777542 567777776
No 199
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.82 E-value=2.1e-20 Score=190.55 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=117.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC---CcEEEEcccccC--------------ccchhhhhH
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTF--------------RSGAVEQLR 431 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~---~GkV~l~~~Dt~--------------RigaveQL~ 431 (589)
.+|++++|.+.+|+ +++|+||||+|||||++.|+|+++|+ +|+|.+.|.++. ++++++|..
T Consensus 18 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 18 QALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred EEEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 58999999999999 99999999999999999999999876 499999987652 257777754
Q ss_pred hhhh------ccccceecc---------CCCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcC
Q 007789 432 THAR------RLQVPIFEK---------GYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNN 495 (589)
Q Consensus 432 ~~~~------~l~v~l~~~---------~~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~ 495 (589)
.+.. ++....... .........+.++++.+++... +..+...||||+||+.|+++|.. +
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~ 170 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQ-----Q 170 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhc-----C
Confidence 3222 221111000 0011123456677877777543 34444569999999999999994 9
Q ss_pred CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 496 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 496 PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+++|| ||||+|||+..+ ..+.+.|..+.... +.+.|++|+
T Consensus 171 p~llll-DEPt~~LD~~~~-~~l~~~l~~~~~~~---g~tvii~tH 211 (262)
T PRK09984 171 AKVILA-DEPIASLDPESA-RIVMDTLRDINQND---GITVVVTLH 211 (262)
T ss_pred CCEEEe-cCccccCCHHHH-HHHHHHHHHHHHhc---CCEEEEEeC
Confidence 999998 999999999976 45557787776432 567777776
No 200
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.82 E-value=3.2e-20 Score=188.52 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=118.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh----CCcEEEEccccc-------CccchhhhhHh--hhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDT-------FRSGAVEQLRT--HAR 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~----~~GkV~l~~~Dt-------~RigaveQL~~--~~~ 435 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++| ++|+|.+.+.++ .+++++.|... +..
T Consensus 17 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 17 PLVHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred ceecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 47999999999999 9999999999999999999999998 899999988765 13788888642 221
Q ss_pred cccc----ceeccCCCC-CHHHHHHHHHHHhcccCC----CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 436 RLQV----PIFEKGYEK-DPAIVAKEAIQEATRNGS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 436 ~l~v----~l~~~~~~~-d~~~ia~~al~~a~l~~~----d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
.+.+ .......+. .....+.++++.+++... +..+-+.|||++|++.|+++|+. +|+++|| ||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~-----~p~lLlL-DEPt 168 (254)
T PRK10418 95 LHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC-----EAPFIIA-DEPT 168 (254)
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc-----CCCEEEE-eCCC
Confidence 1111 000001111 123456677887777542 33444559999999999999994 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|||+..+ ..+.+.|..+... .+.+.+++|+
T Consensus 169 ~~LD~~~~-~~l~~~L~~~~~~---~g~til~~sH 199 (254)
T PRK10418 169 TDLDVVAQ-ARILDLLESIVQK---RALGMLLVTH 199 (254)
T ss_pred cccCHHHH-HHHHHHHHHHHHh---cCcEEEEEec
Confidence 99999876 4555777776543 2567778776
No 201
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.2e-20 Score=186.39 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=117.9
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcc-----
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL----- 437 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l----- 437 (589)
+|++++|++.+|+ +++|+|+||+||||+++.|+|+++|+.|+|.+.+.++. ++++++|...+...+
T Consensus 14 ~l~~is~~i~~Ge--~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGD--YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 6999999999999 99999999999999999999999999999999998764 367777754333222
Q ss_pred -ccceeccCCC-CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 438 -QVPIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 438 -~v~l~~~~~~-~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
.+.+...+.. ......+.++++.+++... +..+-..||||+|++.|+++|.. +|++++| ||||+|+|+..+
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-----~p~llll-DEPt~gLD~~~~ 165 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV-----NPKILLL-DEPFSALDVRTK 165 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-CCCcccCCHHHH
Confidence 1111111101 1122345667777776544 33334559999999999999995 9999998 999999999987
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
. .+.+.+.++... .+.+.+++|+
T Consensus 166 ~-~l~~~l~~~~~~---~~~tili~tH 188 (235)
T cd03299 166 E-KLREELKKIRKE---FGVTVLHVTH 188 (235)
T ss_pred H-HHHHHHHHHHHh---cCCEEEEEec
Confidence 4 444777766542 2567777776
No 202
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=9.4e-20 Score=202.08 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=133.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-CCcEEEEcccccC----------ccchhhhhHh---hh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTF----------RSGAVEQLRT---HA 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-~~GkV~l~~~Dt~----------RigaveQL~~---~~ 434 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++| ++|+|.+.+.++. ++|++.|... +.
T Consensus 274 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 274 KRVDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred cccccceeEEeCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 48999999999999 9999999999999999999999985 8999999887652 3788888742 22
Q ss_pred ------hccccceeccC---CCCC---HHHHHHHHHHHhcccC-C-CccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 435 ------RRLQVPIFEKG---YEKD---PAIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 435 ------~~l~v~l~~~~---~~~d---~~~ia~~al~~a~l~~-~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+++.+..+... +... ....+.++++.+++.. . +..+-+.||||+||+.||++|+. +|+++|
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~-----~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLT-----NPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhh-----CCCEEE
Confidence 22222111000 1111 2244667888887753 2 44444559999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCccc--ccCC
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD--LKKL 578 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~D--L~~~ 578 (589)
| ||||+|||+..+. .+.+.+..+... +.+.|++|+ |.- .+....--|.++..|+-+.+ ...+
T Consensus 427 L-DEPt~~LD~~~~~-~l~~~l~~l~~~----g~tviivsH-d~~---------~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 427 L-DEPTRGVDVGAKY-EIYKLINQLAQE----GVAIIVVSS-ELA---------EVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred E-cCCCCCcCHhHHH-HHHHHHHHHHhC----CCEEEEECC-CHH---------HHHHhCCEEEEEECCEEEEEEccccC
Confidence 8 9999999999874 444677777543 667777777 321 11122334555666665542 2345
Q ss_pred CHHHHHHH
Q 007789 579 NVKSIVKT 586 (589)
Q Consensus 579 ~~~~~v~~ 586 (589)
..+.++..
T Consensus 491 ~~~~~~~~ 498 (500)
T TIGR02633 491 TQEQVLAA 498 (500)
T ss_pred CHHHHHHh
Confidence 55555543
No 203
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.82 E-value=9.8e-20 Score=202.15 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=119.1
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhH--------
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLR-------- 431 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~-------- 431 (589)
+|++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|..
T Consensus 267 ~l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGE--ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCc--EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 6899999999999 99999999999999999999999999999999987641 378888864
Q ss_pred -hhhhccccceec---c--C-CC-CCHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 432 -THARRLQVPIFE---K--G-YE-KDPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 432 -~~~~~l~v~l~~---~--~-~~-~d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
+..+++.+.... . + .. .+....+.++++.+++. .. +..+-+.||||+||+.||++|+. +|+++||
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~-----~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMT-----RPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhh-----CCCEEEE
Confidence 122222221110 0 0 01 11234567788888774 33 34444559999999999999994 9999998
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|..+... +.+.|++|+
T Consensus 420 -DEPt~~LD~~~~~-~l~~~l~~~~~~----g~tviivtH 453 (501)
T PRK10762 420 -DEPTRGVDVGAKK-EIYQLINQFKAE----GLSIILVSS 453 (501)
T ss_pred -cCCCCCCCHhHHH-HHHHHHHHHHHC----CCEEEEEcC
Confidence 9999999999874 444778777543 667788886
No 204
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.9e-20 Score=188.35 Aligned_cols=159 Identities=21% Similarity=0.233 Sum_probs=113.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-----CcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-----~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+ .|+|.+.+.++. ++++++|...
T Consensus 18 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 18 HVIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 48999999999999 99999999999999999999999874 899999987652 3677777543
Q ss_pred hhh------ccccceeccCCCCC---HHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCE
Q 007789 433 HAR------RLQVPIFEKGYEKD---PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 498 (589)
Q Consensus 433 ~~~------~l~v~l~~~~~~~d---~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~Pdl 498 (589)
+.. ++............ ....+.++++.+++.. .+..+...|||++|++.|+++|.. +|++
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~l 170 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM-----KPKI 170 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc-----CCCE
Confidence 322 22111111111011 1234456666665421 233444569999999999999995 9999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 499 ILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 171 lll-DEP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sH 206 (253)
T PRK14267 171 LLM-DEPTANIDPVGTA-KIEELLFELKK-----EYTIVLVTH 206 (253)
T ss_pred EEE-cCCCccCCHHHHH-HHHHHHHHHhh-----CCEEEEEEC
Confidence 998 9999999998764 44477776642 356677766
No 205
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.7e-20 Score=185.56 Aligned_cols=156 Identities=18% Similarity=0.206 Sum_probs=109.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhc-c-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARR-L- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~-l- 437 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|..|+|.+.+.++. ++++++|...+... +
T Consensus 17 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (229)
T cd03254 17 PVLKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM 94 (229)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHH
Confidence 48999999999999 99999999999999999999999999999999886642 37787776543221 0
Q ss_pred -ccceeccCCCCCHHHHHHHHHHHhccc--------CC----CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 438 -QVPIFEKGYEKDPAIVAKEAIQEATRN--------GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 438 -~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~----d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
++.++... ... ..+..+++.+++. ++ +..+...||||+|++.|+++|+. +|+++|| ||
T Consensus 95 ~~~~~~~~~--~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~-----~p~llll-DE 165 (229)
T cd03254 95 ENIRLGRPN--ATD-EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR-----DPKILIL-DE 165 (229)
T ss_pred HHHhccCCC--CCH-HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-eC
Confidence 11111111 111 1222223222211 11 12234559999999999999995 9999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+|||+..+. .+.+.|..+.. +.+.+++|+
T Consensus 166 P~~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sh 196 (229)
T cd03254 166 ATSNIDTETEK-LIQEALEKLMK-----GRTSIIIAH 196 (229)
T ss_pred ccccCCHHHHH-HHHHHHHHhcC-----CCEEEEEec
Confidence 99999999864 44466666531 567777776
No 206
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.4e-20 Score=178.30 Aligned_cols=162 Identities=22% Similarity=0.255 Sum_probs=125.6
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----ccchhhhhHhhhhcc----cc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----RSGAVEQLRTHARRL----QV 439 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----RigaveQL~~~~~~l----~v 439 (589)
..+|+++++.+.+|+ .++++||+||||||+|+.+||+..|..|+|.+++..+. +-|.|+|...+..-+ ++
T Consensus 18 ~~~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNv 95 (259)
T COG4525 18 RSALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNV 95 (259)
T ss_pred hhhhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHH
Confidence 458999999999999 99999999999999999999999999999999988663 356788865443332 23
Q ss_pred ceeccCCCCCH---HHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 440 PIFEKGYEKDP---AIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 440 ~l~~~~~~~d~---~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
.+-.+..+.+. ..++.+.+..+++.+++. .+...||||+||+.|||||+ ++|+++|| |||+..+|+..+
T Consensus 96 afgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa-----~eP~~LlL-DEPfgAlDa~tR- 168 (259)
T COG4525 96 AFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALA-----VEPQLLLL-DEPFGALDALTR- 168 (259)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhh-----cCcceEee-cCchhhHHHHHH-
Confidence 32222223333 356677788888888865 44567999999999999999 69999998 999999999876
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.+.+.|-++... .+...+++|+
T Consensus 169 e~mQelLldlw~~---tgk~~lliTH 191 (259)
T COG4525 169 EQMQELLLDLWQE---TGKQVLLITH 191 (259)
T ss_pred HHHHHHHHHHHHH---hCCeEEEEec
Confidence 4555666666543 3666778877
No 207
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.82 E-value=3.3e-20 Score=188.53 Aligned_cols=181 Identities=20% Similarity=0.180 Sum_probs=127.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH------ 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~------ 433 (589)
.+|++++|.+.+|+ +++|+|+||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+
T Consensus 15 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 15 LIVDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 58999999999999 99999999999999999999999999999999987652 26777775422
Q ss_pred hhccccceec--cCCC---CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 434 ARRLQVPIFE--KGYE---KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 434 ~~~l~v~l~~--~~~~---~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
.+++...... .... ......+.++++.+++... +..+...||||+|++.|+++|+. +|+++|| ||||+
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-----~p~llll-DEPt~ 166 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ-----EPKLLLL-DEPTN 166 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-cCccc
Confidence 2222111100 0011 1122356677777776543 34445569999999999999994 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
|||+... ..+.+.|..+... +.+.+++|+ |.. ......-.|.++..|+-+
T Consensus 167 ~LD~~~~-~~l~~~l~~~~~~----~~tiii~sH-~~~---------~~~~~~d~i~~l~~G~i~ 216 (256)
T TIGR03873 167 HLDVRAQ-LETLALVRELAAT----GVTVVAALH-DLN---------LAASYCDHVVVLDGGRVV 216 (256)
T ss_pred cCCHHHH-HHHHHHHHHHHhc----CCEEEEEeC-CHH---------HHHHhCCEEEEEeCCCEE
Confidence 9999876 4555777777532 556677766 321 112223356666666654
No 208
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.81 E-value=5.6e-20 Score=183.34 Aligned_cols=162 Identities=16% Similarity=0.152 Sum_probs=116.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh---hCCcEEEEcccccC------ccchhhhhHhhhh---
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTF------RSGAVEQLRTHAR--- 435 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~---~~~GkV~l~~~Dt~------RigaveQL~~~~~--- 435 (589)
..+|++++|++.+|+ +++|+||||+|||||++.|+|+++ |+.|+|.+.+.++. +++++.|...+..
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 97 (226)
T cd03234 20 ARILNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLT 97 (226)
T ss_pred cccccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCc
Confidence 468999999999999 999999999999999999999999 89999999987752 3778887643322
Q ss_pred ---ccccceeccCCC-CC---HHHHHHH-HHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 436 ---RLQVPIFEKGYE-KD---PAIVAKE-AIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 436 ---~l~v~l~~~~~~-~d---~~~ia~~-al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
++.+........ .. ....+.+ .++.+++..+. ..+...|||++|++.|+++|+. +|+++|| ||||
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-----~p~illl-DEP~ 171 (226)
T cd03234 98 VRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW-----DPKVLIL-DEPT 171 (226)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh-----CCCEEEE-eCCC
Confidence 222111101111 11 1112233 55555554433 3344569999999999999995 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
+|||+..+. .|.+.+.++... +.+.+++|+-
T Consensus 172 ~gLD~~~~~-~~~~~l~~~~~~----~~tiii~sh~ 202 (226)
T cd03234 172 SGLDSFTAL-NLVSTLSQLARR----NRIVILTIHQ 202 (226)
T ss_pred cCCCHHHHH-HHHHHHHHHHHC----CCEEEEEecC
Confidence 999999864 555777776542 5677777663
No 209
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.2e-20 Score=212.67 Aligned_cols=162 Identities=17% Similarity=0.113 Sum_probs=122.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHh--h
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~--~ 433 (589)
..+|++|+|.+.+|+ +++|+|+||||||||++.|+|+++|+.|+|.+.+.++. ++++++|... +
T Consensus 337 ~~~l~~vs~~i~~Ge--~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l 414 (623)
T PRK10261 337 VHAVEKVSFDLWPGE--TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414 (623)
T ss_pred eEEEeeeEeEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc
Confidence 358999999999999 99999999999999999999999999999999987652 3788888642 2
Q ss_pred hhcccc------ceeccCC--CCCHHHHHHHHHHHhccc-C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 434 ARRLQV------PIFEKGY--EKDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 434 ~~~l~v------~l~~~~~--~~d~~~ia~~al~~a~l~-~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
...+.+ ++...+. .......+.++++.+++. . .+..+-..||||+||+.||++|+. +|+++|| |
T Consensus 415 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~-----~p~llll-D 488 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALAL-----NPKVIIA-D 488 (623)
T ss_pred CCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-e
Confidence 222211 1111111 111234566778887774 2 344445569999999999999994 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+|||+..+...+ +.|.++.... +.+.|++|+
T Consensus 489 EPts~LD~~~~~~i~-~ll~~l~~~~---g~tvi~isH 522 (623)
T PRK10261 489 EAVSALDVSIRGQII-NLLLDLQRDF---GIAYLFISH 522 (623)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHhc---CCEEEEEeC
Confidence 999999999886555 7777776532 678888887
No 210
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.81 E-value=3.7e-20 Score=187.52 Aligned_cols=161 Identities=23% Similarity=0.206 Sum_probs=114.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc-----cC-------------ccchhhhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-----TF-------------RSGAVEQL 430 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D-----t~-------------RigaveQL 430 (589)
.+|++++|++++|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.+ +. +++++.|.
T Consensus 17 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (253)
T TIGR02323 17 KGCRDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQN 94 (253)
T ss_pred eEeecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeC
Confidence 47899999999999 999999999999999999999999999999998765 31 25666665
Q ss_pred Hhhh--------hccccceeccC-C-CCCHHHHHHHHHHHhcccC-C-CccccccCccccccHHHHHHHHhhhhhcCCCE
Q 007789 431 RTHA--------RRLQVPIFEKG-Y-EKDPAIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 498 (589)
Q Consensus 431 ~~~~--------~~l~v~l~~~~-~-~~d~~~ia~~al~~a~l~~-~-d~vliDTSGg~qqr~~LaraL~kl~~~~~Pdl 498 (589)
.... +++...+.... . .......+.++++.+++.. . +..+-..||||+|++.|+++|+. +|++
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~-----~p~v 169 (253)
T TIGR02323 95 PRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVT-----RPRL 169 (253)
T ss_pred cccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhc-----CCCE
Confidence 3210 11100000000 0 0012244566777777642 2 33444559999999999999995 9999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 499 ILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|| ||||+|||+..+. .+.+.|..+... .+.+.|++|+
T Consensus 170 lll-DEP~~~LD~~~~~-~l~~~l~~~~~~---~~~tii~vsH 207 (253)
T TIGR02323 170 VFM-DEPTGGLDVSVQA-RLLDLLRGLVRD---LGLAVIIVTH 207 (253)
T ss_pred EEE-cCCCccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 998 9999999999874 444677666432 2677788776
No 211
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.1e-20 Score=204.58 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=119.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH----- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~----- 433 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++++++|...+
T Consensus 12 ~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 12 KALDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred EeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 58999999999999 99999999999999999999999999999999987652 37888886532
Q ss_pred -hhccccceec-cCC--C-CCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 434 -ARRLQVPIFE-KGY--E-KDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 434 -~~~l~v~l~~-~~~--~-~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
.+++....+. .+. . ......+.++++.+++.......+ ..||||+|++.||++|+. +|+++|| ||||+
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~-----~p~lllL-DEPt~ 163 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY-----NAKIVIM-DEPTS 163 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh-----CCCEEEE-eCCCC
Confidence 2222221111 010 1 111234566777777754433334 459999999999999995 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+...+ +.|.++... +.+.|++|+
T Consensus 164 ~LD~~~~~~l~-~~l~~l~~~----g~tvii~tH 192 (491)
T PRK10982 164 SLTEKEVNHLF-TIIRKLKER----GCGIVYISH 192 (491)
T ss_pred CCCHHHHHHHH-HHHHHHHhC----CCEEEEEec
Confidence 99999875444 677776542 567777776
No 212
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.9e-20 Score=188.15 Aligned_cols=159 Identities=22% Similarity=0.257 Sum_probs=113.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|++.| ++|+|.+.+.++. .+++++|...
T Consensus 18 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 18 HAVEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred eeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 58999999999999 9999999999999999999999874 6999999987652 2677777543
Q ss_pred hh------hccccceeccCC-CC-CHHHHHHHHHHHhccc-----CCCccccccCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 433 HA------RRLQVPIFEKGY-EK-DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 433 ~~------~~l~v~l~~~~~-~~-d~~~ia~~al~~a~l~-----~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
+. +++......... .. .....+.++++.+++. ..+..+...|||++|++.|+++|.. +|+++
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~ll 170 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV-----EPDVL 170 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc-----CCCEE
Confidence 22 222111111111 11 1123455666666552 1234445569999999999999995 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 171 ll-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tviivsH 205 (258)
T PRK14241 171 LM-DEPCSALDPISTL-AIEDLINELKQ-----DYTIVIVTH 205 (258)
T ss_pred EE-cCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEec
Confidence 98 9999999999864 44477777642 346677766
No 213
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.81 E-value=4.4e-20 Score=185.10 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=119.7
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhh----
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~---- 434 (589)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|+++|++|+|.+.+.++. ++++++|...+.
T Consensus 15 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 92 (237)
T cd03252 15 PVILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSI 92 (237)
T ss_pred ccceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchH
Confidence 348999999999999 99999999999999999999999999999999987642 377777764332
Q ss_pred -hccccceeccCCCCCHHHHHHHHHHHhc-----------ccC-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 435 -RRLQVPIFEKGYEKDPAIVAKEAIQEAT-----------RNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 435 -~~l~v~l~~~~~~~d~~~ia~~al~~a~-----------l~~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
+++.+ ... ..... .+.++++..+ +.. .+..+...||||+|++.|+++|+. +|+++||
T Consensus 93 ~~nl~~--~~~--~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~-----~p~llll 162 (237)
T cd03252 93 RDNIAL--ADP--GMSME-RVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH-----NPRILIF 162 (237)
T ss_pred HHHhhc--cCC--CCCHH-HHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh-----CCCEEEE
Confidence 22211 111 11111 1112222111 111 122334559999999999999995 9999998
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||||+|||+..+. .+.+.|..+.. +.+.+++|+ |.- .... .-.|.++..|+-+.
T Consensus 163 -DEP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sH-~~~---------~~~~-~d~v~~l~~G~i~~ 216 (237)
T cd03252 163 -DEATSALDYESEH-AIMRNMHDICA-----GRTVIIIAH-RLS---------TVKN-ADRIIVMEKGRIVE 216 (237)
T ss_pred -eCCcccCCHHHHH-HHHHHHHHhcC-----CCEEEEEeC-CHH---------HHHh-CCEEEEEECCEEEE
Confidence 9999999999874 44466666542 566677766 321 1112 34677777777653
No 214
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.2e-20 Score=187.95 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=113.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++| ++|+|.+.+.++. +++++.|...
T Consensus 33 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 33 QALFDVDLDIPEKT--VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred EEEEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 48999999999999 9999999999999999999999875 8999999987652 2677777542
Q ss_pred h-----hhccccceeccCC--C-CCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 433 H-----ARRLQVPIFEKGY--E-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~--~-~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
. .+++.+.....+. . .+....+.++++.+++.. .+..+...||||+||+.|+++|+. +|+++
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~-----~p~ll 185 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV-----SPEVI 185 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc-----CCCEE
Confidence 2 2222211100111 1 112234566677666632 123344559999999999999994 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 186 lL-DEPt~~LD~~~~~-~l~~~L~~l~~-----~~tiiivtH 220 (267)
T PRK14235 186 LM-DEPCSALDPIATA-KVEELIDELRQ-----NYTIVIVTH 220 (267)
T ss_pred EE-eCCCcCCCHHHHH-HHHHHHHHHhc-----CCeEEEEEc
Confidence 98 9999999999864 44477776643 346667666
No 215
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=5.6e-20 Score=179.50 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=110.1
Q ss_pred cccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----ccchhhhhHhhhhcc----cccee
Q 007789 372 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----RSGAVEQLRTHARRL----QVPIF 442 (589)
Q Consensus 372 ~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----RigaveQL~~~~~~l----~v~l~ 442 (589)
.+++|++++|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.++. +++++.|...+...+ ++.+.
T Consensus 17 ~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~ 94 (195)
T PRK13541 17 FDLSITFLPSA--ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFW 94 (195)
T ss_pred EEEEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHH
Confidence 34999999999 99999999999999999999999999999999998753 256666543211111 11111
Q ss_pred ccCCCCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHH
Q 007789 443 EKGYEKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 521 (589)
Q Consensus 443 ~~~~~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 521 (589)
...+. ....+.++++.+++.......+ +.|||++|++.|+++|+. +|+++|| ||||+|+|+..+ ..+.+.
T Consensus 95 ~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~-----~p~~lll-DEP~~~LD~~~~-~~l~~~ 165 (195)
T PRK13541 95 SEIYN--SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIAC-----QSDLWLL-DEVETNLSKENR-DLLNNL 165 (195)
T ss_pred HHhcc--cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHHHH-HHHHHH
Confidence 11111 1234455667766654333344 459999999999999995 9999998 999999999986 455466
Q ss_pred HHHhhcCCCCCCccEEEEcc
Q 007789 522 LADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 522 l~~l~~~~~~~~it~IIlTK 541 (589)
+..+... +.+.+++|+
T Consensus 166 l~~~~~~----~~tiii~sh 181 (195)
T PRK13541 166 IVMKANS----GGIVLLSSH 181 (195)
T ss_pred HHHHHhC----CCEEEEEeC
Confidence 6544322 566777766
No 216
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.81 E-value=7.6e-20 Score=179.48 Aligned_cols=152 Identities=21% Similarity=0.177 Sum_probs=107.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhh-----hccccceec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA-----RRLQVPIFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~-----~~l~v~l~~ 443 (589)
.+|++++|++++|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+ +++++.|...+. +++....
T Consensus 19 ~il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~i~~~~q~~~l~~~t~~enl~~~~-- 90 (204)
T cd03250 19 FTLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSQEPWIQNGTIRENILFGK-- 90 (204)
T ss_pred ceeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----EEEEEecCchhccCcHHHHhccCC--
Confidence 48999999999999 9999999999999999999999999999999987 788888875433 2221110
Q ss_pred cCCCCCHHHHHHHHHHHhccc--------C----CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 444 KGYEKDPAIVAKEAIQEATRN--------G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~a~l~--------~----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
..... ...++++.+++. + .+......|||++|++.|+++|+. +|+++|| ||||+|||+
T Consensus 91 ---~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~-----~p~llll-DEP~~~LD~ 160 (204)
T cd03250 91 ---PFDEE-RYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS-----DADIYLL-DDPLSAVDA 160 (204)
T ss_pred ---CcCHH-HHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-eCccccCCH
Confidence 11111 112222221110 1 122334559999999999999995 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
..+...+...+..+... +.+.|++|+-
T Consensus 161 ~~~~~l~~~ll~~~~~~----~~tvi~~sh~ 187 (204)
T cd03250 161 HVGRHIFENCILGLLLN----NKTRILVTHQ 187 (204)
T ss_pred HHHHHHHHHHHHHhccC----CCEEEEEeCC
Confidence 87654443344444321 5677777763
No 217
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.5e-20 Score=204.16 Aligned_cols=160 Identities=15% Similarity=0.085 Sum_probs=119.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhh---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR--- 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~--- 435 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|...+..
T Consensus 18 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK11288 18 KALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT 95 (501)
T ss_pred EEEeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence 48999999999999 99999999999999999999999999999999987652 3788888653322
Q ss_pred ---ccccceeccCCC----CCHHHHHHHHHHHhcccCCCcc-ccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 436 ---RLQVPIFEKGYE----KDPAIVAKEAIQEATRNGSDVV-LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 436 ---~l~v~l~~~~~~----~d~~~ia~~al~~a~l~~~d~v-liDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
++.+.......+ .+....+.++++.+++...... +-..||||+||+.|+++|+. +|+++|| ||||+
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~-----~p~lllL-DEPt~ 169 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR-----NARVIAF-DEPTS 169 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh-----CCCEEEE-cCCCC
Confidence 222211100011 1123456677888777644333 44459999999999999995 9999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+..+... .+.|.++... +.+.|++|+
T Consensus 170 ~LD~~~~~~l-~~~l~~~~~~----g~tiiiitH 198 (501)
T PRK11288 170 SLSAREIEQL-FRVIRELRAE----GRVILYVSH 198 (501)
T ss_pred CCCHHHHHHH-HHHHHHHHhC----CCEEEEEeC
Confidence 9999987544 4677766542 667788877
No 218
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.81 E-value=6.2e-20 Score=188.88 Aligned_cols=166 Identities=19% Similarity=0.178 Sum_probs=116.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC--------CcEEEEcccccC---------ccchhhhhH
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--------KVSVMMAACDTF---------RSGAVEQLR 431 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~--------~GkV~l~~~Dt~---------RigaveQL~ 431 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+ .|+|.+.+.++. ++++++|..
T Consensus 15 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 15 AILRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 48999999999999 99999999999999999999999997 899999987652 256777753
Q ss_pred h------hhhccccceecc----C-CCCCHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhh----hcC
Q 007789 432 T------HARRLQVPIFEK----G-YEKDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIY----LNN 495 (589)
Q Consensus 432 ~------~~~~l~v~l~~~----~-~~~d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~----~~~ 495 (589)
. ..+++....+.. . ........+.++++.+++..+. ..+...||||+|++.|+++|+..+. ..+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 2 222222211110 0 1111234566777777765433 3344559999999999999981000 017
Q ss_pred CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 496 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 496 PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+++|| ||||+|||+..+. .+.+.|..+.... +.+.|++|+
T Consensus 173 p~lllL-DEPt~~LD~~~~~-~l~~~l~~~~~~~---~~tviiisH 213 (272)
T PRK13547 173 PRYLLL-DEPTAALDLAHQH-RLLDTVRRLARDW---NLGVLAIVH 213 (272)
T ss_pred CCEEEE-cCccccCCHHHHH-HHHHHHHHHHHhc---CCEEEEEEC
Confidence 999888 9999999999875 4447777665432 566777766
No 219
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=8.4e-20 Score=172.69 Aligned_cols=162 Identities=19% Similarity=0.235 Sum_probs=129.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-------Cc--cchhhhhH-----hh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FR--SGAVEQLR-----TH 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-------~R--igaveQL~-----~~ 433 (589)
-.+|+++||++.+|+ .++|+||+||||||+++.+|.+..|+.|.+++.|.|+ || ++|+-|-. ++
T Consensus 16 a~il~~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 16 AKILNNISLSVRAGE--FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CeeecceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 458999999999999 9999999999999999999999999999999999887 33 67777755 34
Q ss_pred hhccccceeccCCCCCHHHHHHHHHHHhcccCC--CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 434 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 434 ~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~--d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
.++|-+|+..+....|+ ..+.+.++++.+... +..+-+.|||++|+.+|+|.|. .-|+++|| ||||+.||+
T Consensus 94 eDNlifP~~~r~rr~dr-~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq-----~~P~ILLL-DE~TsALD~ 166 (223)
T COG4619 94 EDNLIFPWQIRNRRPDR-AAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ-----FMPKILLL-DEITSALDE 166 (223)
T ss_pred hhccccchHHhccCCCh-HHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh-----cCCceEEe-cCchhhcCh
Confidence 66667776655544444 456677888776543 4455567999999999999999 48999888 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
.+. +..++.|..+.. +..+..+.+|+=
T Consensus 167 ~nk-r~ie~mi~~~v~---~q~vAv~WiTHd 193 (223)
T COG4619 167 SNK-RNIEEMIHRYVR---EQNVAVLWITHD 193 (223)
T ss_pred hhH-HHHHHHHHHHhh---hhceEEEEEecC
Confidence 874 666666665543 347888889883
No 220
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.81 E-value=6.7e-20 Score=184.31 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=118.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhccc---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ--- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~--- 438 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 14 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 14 QALDDVNLEVPTGS--LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 58999999999999 99999999999999999999999999999999887752 3677777654433221
Q ss_pred -cceeccCCCCC---HHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 439 -VPIFEKGYEKD---PAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 439 -v~l~~~~~~~d---~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
+.+....++.+ ....+.++++.+++..+.. .+...||||+|++.|+++|+. +|+++|| ||||+|||+..
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~-----~p~llll-DEP~~~LD~~~ 165 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAV-----EPQVLLL-DEPFGALDAKV 165 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCcccCCHHH
Confidence 11111111111 1234566777776654333 334559999999999999995 9999998 99999999997
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+ ..|.+.|.++... .+.+.+++|+
T Consensus 166 ~-~~~~~~l~~~~~~---~~~tvli~sH 189 (237)
T TIGR00968 166 R-KELRSWLRKLHDE---VHVTTVFVTH 189 (237)
T ss_pred H-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 6 4555777766542 2567777776
No 221
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.81 E-value=6.2e-20 Score=174.76 Aligned_cols=127 Identities=14% Similarity=0.218 Sum_probs=99.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|++|+|.+.+.++.+....+ ...+. +.+
T Consensus 14 ~vl~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~---~~~~~--i~~------- 79 (163)
T cd03216 14 KALDGVSLSVRRGE--VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD---ARRAG--IAM------- 79 (163)
T ss_pred EEEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHH---HHhcC--eEE-------
Confidence 48999999999999 99999999999999999999999999999999887653321100 00011 111
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
+.+.||||+|++.|+++|.. +|+++|| ||||+|||+..+ +.+.+.+.++...
T Consensus 80 ---------------------~~qLS~G~~qrl~laral~~-----~p~illl-DEP~~~LD~~~~-~~l~~~l~~~~~~ 131 (163)
T cd03216 80 ---------------------VYQLSVGERQMVEIARALAR-----NARLLIL-DEPTAALTPAEV-ERLFKVIRRLRAQ 131 (163)
T ss_pred ---------------------EEecCHHHHHHHHHHHHHhc-----CCCEEEE-ECCCcCCCHHHH-HHHHHHHHHHHHC
Confidence 11189999999999999995 9999998 999999999876 4555777777532
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
+.+.+++|+
T Consensus 132 ----~~tiii~sh 140 (163)
T cd03216 132 ----GVAVIFISH 140 (163)
T ss_pred ----CCEEEEEeC
Confidence 567777766
No 222
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.7e-20 Score=186.25 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=112.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|++. |+.|+|.+.+.++. +++++.|...
T Consensus 24 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 24 LAVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred EEeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 58999999999999 999999999999999999999886 37899999886641 2677777532
Q ss_pred -----hhhccccceeccCCCCCHHHHHHHHHHHhccc-----CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 433 -----HARRLQVPIFEKGYEKDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 433 -----~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~-----~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
..+++................+.++++.+++. ..+..+...||||+|++.|+++|+. +|+++||
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~-----~p~lllL- 175 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV-----QPEVILM- 175 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 22332222111111112223444555555442 1233445569999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|..+.. ..+.|++|+
T Consensus 176 DEPt~~LD~~~~~-~l~~~L~~~~~-----~~tvi~vtH 208 (264)
T PRK14243 176 DEPCSALDPISTL-RIEELMHELKE-----QYTIIIVTH 208 (264)
T ss_pred eCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEec
Confidence 9999999999875 45577777653 246677665
No 223
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.81 E-value=7.3e-20 Score=175.54 Aligned_cols=139 Identities=20% Similarity=0.231 Sum_probs=100.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
.+++++++.+.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++..... . .+...+. +......-
T Consensus 16 ~~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~---~~~~~i~--~~~q~~~~ 87 (173)
T cd03246 16 PVLRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP-N---ELGDHVG--YLPQDDEL 87 (173)
T ss_pred cceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH-H---HHHhheE--EECCCCcc
Confidence 48999999999999 999999999999999999999999999999999877632211 0 0111111 11100000
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
.+..+ .+.+ .||||+|++.|+++|+. +|+++|| ||||+|||+..+. .+.+.+..+...
T Consensus 88 ~~~tv----~~~l-----------LS~G~~qrv~la~al~~-----~p~~lll-DEPt~~LD~~~~~-~l~~~l~~~~~~ 145 (173)
T cd03246 88 FSGSI----AENI-----------LSGGQRQRLGLARALYG-----NPRILVL-DEPNSHLDVEGER-ALNQAIAALKAA 145 (173)
T ss_pred ccCcH----HHHC-----------cCHHHHHHHHHHHHHhc-----CCCEEEE-ECCccccCHHHHH-HHHHHHHHHHhC
Confidence 00011 1110 89999999999999994 9999998 9999999999875 444777766542
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
+.+.+++|+
T Consensus 146 ----~~tii~~sh 154 (173)
T cd03246 146 ----GATRIVIAH 154 (173)
T ss_pred ----CCEEEEEeC
Confidence 567777776
No 224
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.9e-20 Score=190.16 Aligned_cols=159 Identities=21% Similarity=0.274 Sum_probs=114.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|.+.+|+ +++|+|+||+|||||++.|+|++. |+.|+|.+.+.++. ++++++|...
T Consensus 53 ~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 53 QALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred eeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 48999999999999 999999999999999999999987 58999999887652 3677777542
Q ss_pred h-----hhccccceeccCCCCCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 433 H-----ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+ .+++.......+...+....+.++++.+++.. .+..+...||||+|++.|+++|+. +|+++||
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~-----~p~lLLL- 204 (285)
T PRK14254 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP-----DPEVILM- 204 (285)
T ss_pred cCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 2 22222111111111122344566676665531 234445569999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|..+.. ..+.|++|+
T Consensus 205 DEPts~LD~~~~~-~l~~~L~~~~~-----~~tiii~tH 237 (285)
T PRK14254 205 DEPASALDPVATS-KIEDLIEELAE-----EYTVVIVTH 237 (285)
T ss_pred eCCCCCCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 9999999998764 45577777753 245666666
No 225
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.81 E-value=9.8e-20 Score=202.95 Aligned_cols=194 Identities=15% Similarity=0.118 Sum_probs=133.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc-ccc---c------------CccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA-ACD---T------------FRSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~-~~D---t------------~RigaveQL~~ 432 (589)
.+|++++|.+.+|+ +++|+||||||||||+++|+|+++|+.|+|.+. +.+ + .++|+++|...
T Consensus 298 ~il~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 298 KAVDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred eEEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 58999999999999 999999999999999999999999999999995 421 1 13788888643
Q ss_pred hhhcccc----ce-eccCCCCC-HHHHHHHHHHHhcccC------CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 HARRLQV----PI-FEKGYEKD-PAIVAKEAIQEATRNG------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~~~~l~v----~l-~~~~~~~d-~~~ia~~al~~a~l~~------~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+...+.+ .+ +....... ....+.++++.+++.. .+..+-..||||+||+.|+++|+. +|+++|
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~-----~p~lLl 450 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK-----EPRIVI 450 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 3222211 11 00011111 2234566777777754 233444559999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCH
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNV 580 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~ 580 (589)
| ||||+|||+..+. .+.+.|.++.... +.+.|++|+ |. ..+....-.|.++..|+-+.+ -.+
T Consensus 451 l-DEPt~~LD~~~~~-~l~~~l~~l~~~~---g~tvi~vsH-d~---------~~~~~~~d~i~~l~~G~i~~~---g~~ 512 (520)
T TIGR03269 451 L-DEPTGTMDPITKV-DVTHSILKAREEM---EQTFIIVSH-DM---------DFVLDVCDRAALMRDGKIVKI---GDP 512 (520)
T ss_pred E-eCCcccCCHHHHH-HHHHHHHHHHHHc---CcEEEEEeC-CH---------HHHHHhCCEEEEEECCEEEEE---CCH
Confidence 8 9999999999864 4447777765432 677788887 32 111223446778888875432 245
Q ss_pred HHHHHHh
Q 007789 581 KSIVKTL 587 (589)
Q Consensus 581 ~~~v~~L 587 (589)
+.+.+.|
T Consensus 513 ~~~~~~~ 519 (520)
T TIGR03269 513 EEIVEEL 519 (520)
T ss_pred HHHHhhc
Confidence 5555443
No 226
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=5e-20 Score=176.70 Aligned_cols=132 Identities=21% Similarity=0.314 Sum_probs=100.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc--------cchhhhhHhhhhccccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------SGAVEQLRTHARRLQVP 440 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R--------igaveQL~~~~~~l~v~ 440 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++|..|+|.+.+.++.. +++++|...
T Consensus 14 ~~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~-------- 83 (173)
T cd03230 14 TALDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS-------- 83 (173)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCc--------
Confidence 48999999999999 999999999999999999999999999999999876532 222222210
Q ss_pred eeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHH
Q 007789 441 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 520 (589)
Q Consensus 441 l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~ 520 (589)
++ ... .+ .+.+. .||||+|++.|+++|+. +|+++|+ ||||+|||+..+. .+.+
T Consensus 84 ~~---~~~---tv-~~~~~-------------LS~G~~qrv~laral~~-----~p~illl-DEPt~~LD~~~~~-~l~~ 136 (173)
T cd03230 84 LY---ENL---TV-RENLK-------------LSGGMKQRLALAQALLH-----DPELLIL-DEPTSGLDPESRR-EFWE 136 (173)
T ss_pred cc---cCC---cH-HHHhh-------------cCHHHHHHHHHHHHHHc-----CCCEEEE-eCCccCCCHHHHH-HHHH
Confidence 00 000 11 11110 89999999999999995 9999998 9999999999874 4447
Q ss_pred HHHHhhcCCCCCCccEEEEcc
Q 007789 521 KLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 521 ~l~~l~~~~~~~~it~IIlTK 541 (589)
.|..+... +.+.+++|+
T Consensus 137 ~l~~~~~~----g~tiii~th 153 (173)
T cd03230 137 LLRELKKE----GKTILLSSH 153 (173)
T ss_pred HHHHHHHC----CCEEEEECC
Confidence 77776543 456677776
No 227
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.81 E-value=7.8e-20 Score=202.24 Aligned_cols=160 Identities=19% Similarity=0.064 Sum_probs=116.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhh---h-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---R- 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~---~- 435 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.+.. ++|++.|..... .
T Consensus 17 ~il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 17 KTLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPG 94 (490)
T ss_pred eecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccc
Confidence 48999999999999 99999999999999999999999999999998776542 156666643210 0
Q ss_pred --ccccceeccC-CCCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 436 --RLQVPIFEKG-YEKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 436 --~l~v~l~~~~-~~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
..+..+.... ........+.++++.+++..+....+ +.||||+||+.|+++|+. +|+++|| ||||+|||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~lllL-DEPt~~LD~ 168 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS-----EPDLLIL-DEPFDGLDV 168 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-cCCcccCCH
Confidence 0011111100 01122345667888887765444444 459999999999999994 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+. .+.+.|..+... +.+.|++|+
T Consensus 169 ~~~~-~l~~~l~~~~~~----g~tvii~tH 193 (490)
T PRK10938 169 ASRQ-QLAELLASLHQS----GITLVLVLN 193 (490)
T ss_pred HHHH-HHHHHHHHHHhc----CCeEEEEeC
Confidence 9864 444777777543 567777776
No 228
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.81 E-value=6.4e-20 Score=184.95 Aligned_cols=160 Identities=19% Similarity=0.111 Sum_probs=112.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH--hhCCcEEEEcccccC----------ccchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF----------RSGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll--~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~ 436 (589)
.+|++++|.+.+|+ +++|+|+||+|||||+++|+|++ +|+.|+|.+.+.++. +++++.|.......
T Consensus 15 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 15 AILRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 48999999999999 99999999999999999999995 689999999987652 26666665432111
Q ss_pred cc-----------cceeccCCCCC---HHHHHHHHHHHhccc-CCCcccc--ccCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 437 LQ-----------VPIFEKGYEKD---PAIVAKEAIQEATRN-GSDVVLV--DTAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 437 l~-----------v~l~~~~~~~d---~~~ia~~al~~a~l~-~~d~vli--DTSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
+. +..+......+ ....+.+.++.+++. ++....+ ..||||+|++.||++|+. +|+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~il 167 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL-----EPELC 167 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc-----CCCEE
Confidence 10 00000000001 123345556665553 2333333 469999999999999995 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|| ||||+|||+..+. .+.+.|..+... +.+.|++|+
T Consensus 168 lL-DEPt~~LD~~~~~-~l~~~l~~l~~~----~~tiii~sH 203 (248)
T PRK09580 168 IL-DESDSGLDIDALK-IVADGVNSLRDG----KRSFIIVTH 203 (248)
T ss_pred EE-eCCCccCCHHHHH-HHHHHHHHHHhC----CCEEEEEeC
Confidence 98 9999999998764 555777766543 567777776
No 229
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.81 E-value=5.8e-20 Score=182.14 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=109.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l-- 437 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. ++++++|...+...-
T Consensus 18 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 95 (221)
T cd03244 18 PVLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIR 95 (221)
T ss_pred ccccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHH
Confidence 48999999999999 99999999999999999999999999999999987652 267777765332210
Q ss_pred -ccceeccCCCCCHHHHHHHHHHHhcccC--------C----CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 438 -QVPIFEKGYEKDPAIVAKEAIQEATRNG--------S----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 438 -~v~l~~~~~~~d~~~ia~~al~~a~l~~--------~----d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
++.++.. ... ..+.++++.+++.. + +......||||+|++.|+++|+. +|+++|| ||
T Consensus 96 enl~~~~~---~~~-~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~-----~p~llll-DE 165 (221)
T cd03244 96 SNLDPFGE---YSD-EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR-----KSKILVL-DE 165 (221)
T ss_pred HHhCcCCC---CCH-HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-eC
Confidence 1111111 111 22333444333221 1 12334459999999999999995 9999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+|||+..+. .+.+.|.++.. +.+.|++|+
T Consensus 166 P~~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sh 196 (221)
T cd03244 166 ATASVDPETDA-LIQKTIREAFK-----DCTVLTIAH 196 (221)
T ss_pred ccccCCHHHHH-HHHHHHHHhcC-----CCEEEEEeC
Confidence 99999999864 44577766532 346666665
No 230
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.1e-20 Score=210.44 Aligned_cols=162 Identities=18% Similarity=0.161 Sum_probs=119.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-----------------------Ccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------------------FRS 424 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-----------------------~Ri 424 (589)
..+|++|+|++.+|+ +++|||+||||||||+++|+|++.|++|+|.+.+.++ .++
T Consensus 29 ~~~l~~is~~v~~Ge--~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i 106 (623)
T PRK10261 29 IAAVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM 106 (623)
T ss_pred eeEEEeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE
Confidence 468999999999999 9999999999999999999999999999998876411 137
Q ss_pred chhhhhH--hh------hhccccceec-cCCCC-CHHHHHHHHHHHhcccC----CCccccccCccccccHHHHHHHHhh
Q 007789 425 GAVEQLR--TH------ARRLQVPIFE-KGYEK-DPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKL 490 (589)
Q Consensus 425 gaveQL~--~~------~~~l~v~l~~-~~~~~-d~~~ia~~al~~a~l~~----~d~vliDTSGg~qqr~~LaraL~kl 490 (589)
|+++|.. .+ .+++...+.. .+... +....+.++++.+++.. .+..+...||||+||+.||++|+
T Consensus 107 g~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~-- 184 (623)
T PRK10261 107 AMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS-- 184 (623)
T ss_pred EEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh--
Confidence 8888854 12 2222221111 11111 12245667787777743 23444455999999999999999
Q ss_pred hhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 491 IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 491 ~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+|+++|| ||||++||+..+...+ +.+..+.... +.++|++|+
T Consensus 185 ---~~P~lLll-DEPt~~LD~~~~~~l~-~ll~~l~~~~---g~tvi~itH 227 (623)
T PRK10261 185 ---CRPAVLIA-DEPTTALDVTIQAQIL-QLIKVLQKEM---SMGVIFITH 227 (623)
T ss_pred ---CCCCEEEE-eCCCCccCHHHHHHHH-HHHHHHHHhc---CCEEEEEcC
Confidence 59999998 9999999999875444 7777776432 677788877
No 231
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.81 E-value=5.7e-20 Score=186.52 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=109.8
Q ss_pred cccccccccc-----cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhcccc----c
Q 007789 370 ILRDVHAAKE-----QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV----P 440 (589)
Q Consensus 370 iL~~Is~~i~-----~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v----~ 440 (589)
.+.++++.+. +|+ +++|+||||||||||+++|+|+++|+.|+|.+.+. ++++++|.......+.+ .
T Consensus 9 ~~~~~~l~~~~~~i~~Ge--~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---~i~~~~q~~~~~~~~tv~e~l~ 83 (246)
T cd03237 9 TLGEFTLEVEGGSISESE--VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---TVSYKPQYIKADYEGTVRDLLS 83 (246)
T ss_pred ccCcEEEEEecCCcCCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---eEEEecccccCCCCCCHHHHHH
Confidence 4556666654 688 99999999999999999999999999999998875 57777775422111111 1
Q ss_pred eeccCCCCCHHHHHHHHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHH
Q 007789 441 IFEKGYEKDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 519 (589)
Q Consensus 441 l~~~~~~~d~~~ia~~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 519 (589)
.+..... .....+.++++.+++.... ..+-..||||+|++.|+++|+. +|+++|| ||||++||+..+. .+.
T Consensus 84 ~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~-----~p~llll-DEPt~~LD~~~~~-~l~ 155 (246)
T cd03237 84 SITKDFY-THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK-----DADIYLL-DEPSAYLDVEQRL-MAS 155 (246)
T ss_pred HHhhhcc-ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHHHHH-HHH
Confidence 1111111 1122345667777665433 3334459999999999999995 9999998 9999999999864 444
Q ss_pred HHHHHhhcCCCCCCccEEEEcc
Q 007789 520 QKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 520 ~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.|..+.... +.+.|++|+
T Consensus 156 ~~l~~~~~~~---~~tiiivsH 174 (246)
T cd03237 156 KVIRRFAENN---EKTAFVVEH 174 (246)
T ss_pred HHHHHHHHhc---CCEEEEEeC
Confidence 7777765432 567777776
No 232
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.81 E-value=9.4e-20 Score=181.79 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=111.3
Q ss_pred cccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc----CccchhhhhHhhh--------hccccceec
Q 007789 376 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHA--------RRLQVPIFE 443 (589)
Q Consensus 376 ~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt----~RigaveQL~~~~--------~~l~v~l~~ 443 (589)
|.+++|+ +++|+|+||+|||||+++|+|+++|++|+|.+.+.++ .++++++|...+. +++......
T Consensus 1 l~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGE--LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 3567899 9999999999999999999999999999999999875 2488888865331 111111000
Q ss_pred --cCC--C-CCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHH
Q 007789 444 --KGY--E-KDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 517 (589)
Q Consensus 444 --~~~--~-~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 517 (589)
... . ......+.++++.+++..+.. .+.+.||||+|++.|+++|+. +|+++|| ||||+|||+..+. .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llil-DEP~~~LD~~~~~-~ 151 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALAT-----RPSVLLL-DEPFTGLDMPTQE-L 151 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCcccCCHHHHH-H
Confidence 000 1 112234667788777765433 344559999999999999995 9999998 9999999999874 4
Q ss_pred HHHHHHHhhcCCCCCCccEEEEcc
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.+.+.++... +.+.|++|+
T Consensus 152 l~~~l~~~~~~----~~tvii~sH 171 (223)
T TIGR03771 152 LTELFIELAGA----GTAILMTTH 171 (223)
T ss_pred HHHHHHHHHHc----CCEEEEEeC
Confidence 44777766532 667788776
No 233
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.4e-20 Score=186.04 Aligned_cols=159 Identities=16% Similarity=0.216 Sum_probs=113.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||||||||+++|+|++.| +.|+|.+.+.++. +++++.|...
T Consensus 21 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (254)
T PRK14273 21 KALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98 (254)
T ss_pred eeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence 48999999999999 9999999999999999999999987 4899999886642 2677777543
Q ss_pred h-----hhccccceeccC-CCC-CHHHHHHHHHHHhccc-----CCCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKG-YEK-DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~-~~~-d~~~ia~~al~~a~l~-----~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
. .+++.......+ ... .....+.++++.+++. ..+..+-..||||+|++.|+++|.. +|+++|
T Consensus 99 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~-----~p~lll 173 (254)
T PRK14273 99 PFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI-----EPNVIL 173 (254)
T ss_pred cccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc-----CCCEEE
Confidence 2 222211110011 111 1123455566665541 1344445569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 174 L-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tvii~sH 207 (254)
T PRK14273 174 M-DEPTSALDPISTG-KIEELIINLKE-----SYTIIIVTH 207 (254)
T ss_pred E-eCCCcccCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 8 9999999999875 44477777642 456677666
No 234
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.9e-20 Score=186.68 Aligned_cols=180 Identities=15% Similarity=0.180 Sum_probs=123.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++. |+.|+|.+.+.++. ++++++|...
T Consensus 27 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 27 HALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred EEeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 48999999999999 999999999999999999999986 47899999987652 3777777643
Q ss_pred hh-----hccccceec-cCCCC-CHHHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 HA-----RRLQVPIFE-KGYEK-DPAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~~-----~~l~v~l~~-~~~~~-d~~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+. +++...... ..... +....+.++++.+++. . .+..+...||||+|++.|+++|+. +|+++|
T Consensus 105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~-----~p~lll 179 (260)
T PRK10744 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI-----RPEVLL 179 (260)
T ss_pred cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC-----CCCEEE
Confidence 22 222111100 01111 1123456677776642 1 233444559999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
| ||||+|||+..+. .|.+.|.++.. +.+.|++|+--. ......--|.++..|+-+
T Consensus 180 L-DEPt~~LD~~~~~-~l~~~L~~~~~-----~~tiii~sH~~~----------~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 180 L-DEPCSALDPISTG-RIEELITELKQ-----DYTVVIVTHNMQ----------QAARCSDYTAFMYLGELI 234 (260)
T ss_pred E-cCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEeCCHH----------HHHHhCCEEEEEECCEEE
Confidence 8 9999999998764 45577777642 356777776221 111223356666666654
No 235
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=5.8e-20 Score=177.02 Aligned_cols=146 Identities=25% Similarity=0.301 Sum_probs=100.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++..... ....+...+ .+.......
T Consensus 14 ~~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~~~~i--~~~~q~~~~ 87 (178)
T cd03229 14 TVLNDVSLNIEAGE--IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED--ELPPLRRRI--GMVFQDFAL 87 (178)
T ss_pred EEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccch--hHHHHhhcE--EEEecCCcc
Confidence 48999999999999 999999999999999999999999999999999876543210 000111111 111100000
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
.+...+.+.+. . -.||||+|++.|+++|+. +|++++| ||||+|+|+..+...+ +.+..+...
T Consensus 88 ~~~~t~~~~l~---~--------~lS~G~~qr~~la~al~~-----~p~llil-DEP~~~LD~~~~~~l~-~~l~~~~~~ 149 (178)
T cd03229 88 FPHLTVLENIA---L--------GLSGGQQQRVALARALAM-----DPDVLLL-DEPTSALDPITRREVR-ALLKSLQAQ 149 (178)
T ss_pred CCCCCHHHhee---e--------cCCHHHHHHHHHHHHHHC-----CCCEEEE-eCCcccCCHHHHHHHH-HHHHHHHHh
Confidence 00000011100 0 189999999999999995 9999998 9999999999875444 777766543
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
. +.+.+++|+
T Consensus 150 ~---~~tiii~sH 159 (178)
T cd03229 150 L---GITVVLVTH 159 (178)
T ss_pred c---CCEEEEEeC
Confidence 1 456667666
No 236
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.7e-19 Score=197.08 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=153.0
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhcc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~l 437 (589)
+.+|++|+|++.+|+ +++|+|.||||||||++.|+|.++|++|+|.+.|..+. -++.|.|...++.+|
T Consensus 21 V~AL~~v~l~v~~GE--V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~L 98 (500)
T COG1129 21 VKALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNL 98 (500)
T ss_pred ceeeccceeEEeCce--EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCc
Confidence 679999999999999 99999999999999999999999999999999987652 277888877666666
Q ss_pred ccc--eeccC------CC---CCHHHHHHHHHHHhccc-CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 438 QVP--IFEKG------YE---KDPAIVAKEAIQEATRN-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 438 ~v~--l~~~~------~~---~d~~~ia~~al~~a~l~-~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
.|. +|... .- +.....+.++++.++.. +.+...-+.|+++||-++|||||.. ++.+++| |||
T Consensus 99 sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~-----~arllIl-DEP 172 (500)
T COG1129 99 SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF-----DARVLIL-DEP 172 (500)
T ss_pred cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCC
Confidence 432 11110 01 12235566777776653 3344445569999999999999995 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccchhhhhHhHHHhCCCEEEEecCCCcc--c-ccCCCHH
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--D-LKKLNVK 581 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k~G~als~~~~~g~PI~fig~Gq~v~--D-L~~~~~~ 581 (589)
|+.|+..+....| +.++++... |+.+|++|+ +|++ +...--|.-+-.|+.+. + +..++.+
T Consensus 173 TaaLt~~E~~~Lf-~~ir~Lk~~----Gv~ii~ISHrl~Ei-----------~~i~DritVlRDG~~v~~~~~~~~~~~~ 236 (500)
T COG1129 173 TAALTVKETERLF-DLIRRLKAQ----GVAIIYISHRLDEV-----------FEIADRITVLRDGRVVGTRPTAAETSED 236 (500)
T ss_pred cccCCHHHHHHHH-HHHHHHHhC----CCEEEEEcCcHHHH-----------HHhcCEEEEEeCCEEeeecccccCCCHH
Confidence 9999999887777 788888755 788887776 6665 34455788888999886 4 5689999
Q ss_pred HHHHHhh
Q 007789 582 SIVKTLL 588 (589)
Q Consensus 582 ~~v~~Ll 588 (589)
.+++.+.
T Consensus 237 ~lv~~Mv 243 (500)
T COG1129 237 ELVRLMV 243 (500)
T ss_pred HHHHHhh
Confidence 9998764
No 237
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.81 E-value=1e-19 Score=202.53 Aligned_cols=159 Identities=12% Similarity=0.158 Sum_probs=117.3
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHh-------
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRT------- 432 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~------- 432 (589)
+|++++|.+.+|+ +++|+||||||||||++.|+|+++|++|+|.+.+.++. ++++++|.+.
T Consensus 278 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGE--ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5899999999999 99999999999999999999999999999999887642 3788888531
Q ss_pred --hhhccccceec-cCC---CCCHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 433 --HARRLQVPIFE-KGY---EKDPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 433 --~~~~l~v~l~~-~~~---~~d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
..+++....+. ... .......+.++++.+++. .. +..+-..||||+||+.||++|+. +|+++|| ||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~-----~p~lLlL-DE 429 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA-----SPQLLIV-DE 429 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh-----CCCEEEE-CC
Confidence 11221110000 000 111223466778888775 33 33444559999999999999994 9999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+|||+..+. .+.+.|.++... +.+.|++|+
T Consensus 430 Pt~gLD~~~~~-~l~~~l~~l~~~----g~tiIivsH 461 (510)
T PRK15439 430 PTRGVDVSARN-DIYQLIRSIAAQ----NVAVLFISS 461 (510)
T ss_pred CCcCcChhHHH-HHHHHHHHHHhC----CCEEEEECC
Confidence 99999999874 444777777653 567777776
No 238
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.81 E-value=9e-20 Score=182.96 Aligned_cols=174 Identities=19% Similarity=0.210 Sum_probs=117.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA----- 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~----- 434 (589)
.+|++++|++++|+ +++|+|+||+|||||++.|+|+++|.+|+|.+.+.++. ++++++|...+.
T Consensus 17 ~~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (238)
T cd03249 17 PILKGLSLTIPPGK--TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94 (238)
T ss_pred cceeceEEEecCCC--EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence 48999999999999 99999999999999999999999999999999987652 367777765332
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhc-----------ccC-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEAT-----------RNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~-----------l~~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.+.. ... ... ...+.++..+ +.. .+..+...||||+|++.|+++|+. +|+++||
T Consensus 95 e~l~~~~--~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~llll- 163 (238)
T cd03249 95 ENIRYGK--PDA--TDE-EVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR-----NPKILLL- 163 (238)
T ss_pred HHhhccC--CCC--CHH-HHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 2221111 111 111 1112222111 111 122334569999999999999994 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||||+|||+..+. .|.+.|..+. .+.+.+++|+ |.-. + . ..--|..+..|+-+
T Consensus 164 DEP~~gLD~~~~~-~l~~~l~~~~-----~g~~vi~~sh-~~~~------~---~-~~d~v~~l~~G~i~ 216 (238)
T cd03249 164 DEATSALDAESEK-LVQEALDRAM-----KGRTTIVIAH-RLST------I---R-NADLIAVLQNGQVV 216 (238)
T ss_pred eCccccCCHHHHH-HHHHHHHHhc-----CCCEEEEEeC-CHHH------H---h-hCCEEEEEECCEEE
Confidence 9999999999874 4557776653 2566677665 3210 1 1 12356777777654
No 239
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.6e-19 Score=198.26 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=118.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc----------cchhhhhHhh---hh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----------SGAVEQLRTH---AR 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R----------igaveQL~~~---~~ 435 (589)
.+|++++|.+..|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++.+ +|+++|.+.. ..
T Consensus 262 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKGE--ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred cccceeeEEEeCCc--EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 47999999999999 999999999999999999999999999999999877632 6778776531 11
Q ss_pred ccc---------cceeccCCC----CCHHHHHHHHHHHhccc-C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 436 RLQ---------VPIFEKGYE----KDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 436 ~l~---------v~l~~~~~~----~d~~~ia~~al~~a~l~-~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
.+. +..+...++ ......+.++++.+++. . .+..+-..||||+||+.||++|+. +|+++|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~-----~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLT-----QPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhc-----CCCEEE
Confidence 111 111111011 11223456677777663 2 345555669999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+...+ +.+..+... +.+.|++|+
T Consensus 415 L-DEPt~gLD~~~~~~~~-~~l~~l~~~----~~tvi~vsH 449 (491)
T PRK10982 415 L-DEPTRGIDVGAKFEIY-QLIAELAKK----DKGIIIISS 449 (491)
T ss_pred E-cCCCcccChhHHHHHH-HHHHHHHHC----CCEEEEECC
Confidence 8 9999999999875444 677776543 678888887
No 240
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.80 E-value=8.4e-20 Score=202.46 Aligned_cols=160 Identities=17% Similarity=0.128 Sum_probs=118.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh--CCcEEEEcccccC----------ccchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTF----------RSGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~--~~GkV~l~~~Dt~----------RigaveQL~~~~~~ 436 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++| +.|+|.+.+.++. ++|+++|...+...
T Consensus 15 ~il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 15 KALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred EeecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 48999999999999 9999999999999999999999986 7999999987652 37888886543222
Q ss_pred c------ccceecc--C--CC-CCHHHHHHHHHHHhcccCC-Ccccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 437 L------QVPIFEK--G--YE-KDPAIVAKEAIQEATRNGS-DVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 437 l------~v~l~~~--~--~~-~d~~~ia~~al~~a~l~~~-d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
+ .+..... . .. .+....+.++++.+++... ....+ +.||||+||+.||++|+. +|+++|| |
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~-----~p~lllL-D 166 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK-----QARLLIL-D 166 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh-----CCCEEEE-e
Confidence 2 2111100 0 11 1122445677888777643 23434 559999999999999995 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+|||+..+... .+.|.++... +.+.|++|+
T Consensus 167 EPt~~LD~~~~~~l-~~~l~~l~~~----g~tviiitH 199 (500)
T TIGR02633 167 EPSSSLTEKETEIL-LDIIRDLKAH----GVACVYISH 199 (500)
T ss_pred CCCCCCCHHHHHHH-HHHHHHHHhC----CCEEEEEeC
Confidence 99999999987544 4677777542 667788776
No 241
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.80 E-value=1.1e-19 Score=199.58 Aligned_cols=186 Identities=19% Similarity=0.186 Sum_probs=139.2
Q ss_pred cccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC----CcEEEEccccc-------------Cccchhh
Q 007789 366 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----KVSVMMAACDT-------------FRSGAVE 428 (589)
Q Consensus 366 ~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~----~GkV~l~~~Dt-------------~Rigave 428 (589)
..+.++++|||++.+|+ +++|||.+||||||++..|.|++.+. +|+|.+.|.|. .++++++
T Consensus 20 ~~~~~v~~vsf~v~~GE--~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~ 97 (539)
T COG1123 20 GRVPAVRDVSFEVEPGE--ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIF 97 (539)
T ss_pred cceeeeecceEEecCCc--EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEe
Confidence 33579999999999999 99999999999999999999999887 79999999876 2488999
Q ss_pred hhHh--------hhhccccceecc--CCCCCHHHHHHHHHHHhcccCCC---ccccccCccccccHHHHHHHHhhhhhcC
Q 007789 429 QLRT--------HARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSD---VVLVDTAGRMQDNEPLMRALSKLIYLNN 495 (589)
Q Consensus 429 QL~~--------~~~~l~v~l~~~--~~~~d~~~ia~~al~~a~l~~~d---~vliDTSGg~qqr~~LaraL~kl~~~~~ 495 (589)
|... +.+.+.-.+... ....+....+.++++.+++.+.. .++-..||||+||+.||++|+ ++
T Consensus 98 Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa-----~~ 172 (539)
T COG1123 98 QDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALA-----LK 172 (539)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHh-----CC
Confidence 8642 222221111111 11233446667777777775543 366777999999999999999 59
Q ss_pred CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 496 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 496 PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
|+++|+ ||||++||+..|.+.. ++|+++... .+++.+++|+ |. .++....--|..+-.|+-++
T Consensus 173 P~LLIa-DEPTTaLDvt~q~qIL-~llk~l~~e---~g~a~l~ITH-Dl---------~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 173 PKLLIA-DEPTTALDVTTQAQIL-DLLKDLQRE---LGMAVLFITH-DL---------GVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CCEEEE-CCCccccCHHHHHHHH-HHHHHHHHH---cCcEEEEEcC-CH---------HHHHHhcCeEEEEECCEEEE
Confidence 999999 9999999999997666 777777754 4899999988 32 23333444566666676653
No 242
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.80 E-value=7.3e-20 Score=176.95 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=100.6
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccC-CCC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKG-YEK 448 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~-~~~ 448 (589)
+|++++|++.+|+ +++|+|+||+|||||++.|+|+++|+.|+|.+.+.++.+...... +.+.+.+-+-... ..-
T Consensus 15 ~l~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q~~~~~~~ 89 (182)
T cd03215 15 AVRDVSFEVRAGE--IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA---IRAGIAYVPEDRKREGL 89 (182)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHH---HhCCeEEecCCcccCcc
Confidence 7899999999999 999999999999999999999999999999999987643211000 0111111000000 000
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
.+..-+.+.+.... ..||||+|++.|+++|.. +|+++|| ||||+|||+..+. .+.+.+..+...
T Consensus 90 ~~~~t~~e~l~~~~---------~LS~G~~qrl~la~al~~-----~p~llll-DEP~~~LD~~~~~-~l~~~l~~~~~~ 153 (182)
T cd03215 90 VLDLSVAENIALSS---------LLSGGNQQKVVLARWLAR-----DPRVLIL-DEPTRGVDVGAKA-EIYRLIRELADA 153 (182)
T ss_pred cCCCcHHHHHHHHh---------hcCHHHHHHHHHHHHHcc-----CCCEEEE-CCCCcCCCHHHHH-HHHHHHHHHHHC
Confidence 00001111111110 089999999999999994 9999998 9999999999864 455777776542
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
+.+.+++|+
T Consensus 154 ----~~tiii~sh 162 (182)
T cd03215 154 ----GKAVLLISS 162 (182)
T ss_pred ----CCEEEEEeC
Confidence 566677766
No 243
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=7.1e-20 Score=204.54 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=119.2
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-------------ccchhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-------------RSGAVEQ 429 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-------------RigaveQ 429 (589)
..+|++++|++.+|+ +++|+||||||||||++.|+|+++| +.|+|.+.+.++. ++|+++|
T Consensus 22 ~~~l~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q 99 (529)
T PRK15134 22 RTVVNDVSLQIEAGE--TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQ 99 (529)
T ss_pred eeeeeceEEEEeCCC--EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEec
Confidence 358999999999999 9999999999999999999999986 6899999887641 3788888
Q ss_pred hHh--hhhccc----c--cee-ccCCCC-CHHHHHHHHHHHhcccCC----CccccccCccccccHHHHHHHHhhhhhcC
Q 007789 430 LRT--HARRLQ----V--PIF-EKGYEK-DPAIVAKEAIQEATRNGS----DVVLVDTAGRMQDNEPLMRALSKLIYLNN 495 (589)
Q Consensus 430 L~~--~~~~l~----v--~l~-~~~~~~-d~~~ia~~al~~a~l~~~----d~vliDTSGg~qqr~~LaraL~kl~~~~~ 495 (589)
... +...+. + ... ..+... .....+.++++.+++.+. +..+-..||||+||+.||++|+ .+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~-----~~ 174 (529)
T PRK15134 100 EPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL-----TR 174 (529)
T ss_pred CchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHh-----cC
Confidence 642 111111 1 110 011111 223456778888877542 3344455999999999999999 49
Q ss_pred CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 496 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 496 PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+++|| ||||+|||+..+. .+.+.|.++... .+.+.|++|+
T Consensus 175 p~llll-DEPt~~LD~~~~~-~l~~~l~~l~~~---~g~tvi~vtH 215 (529)
T PRK15134 175 PELLIA-DEPTTALDVSVQA-QILQLLRELQQE---LNMGLLFITH 215 (529)
T ss_pred CCEEEE-cCCCCccCHHHHH-HHHHHHHHHHHh---cCCeEEEEcC
Confidence 999998 9999999999875 444777777543 2677788877
No 244
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.80 E-value=8.9e-20 Score=187.00 Aligned_cols=162 Identities=20% Similarity=0.132 Sum_probs=117.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHh--h
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~--~ 433 (589)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|++|+|.+.+.++. +++++.|... +
T Consensus 25 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 358999999999999 99999999999999999999999999999999987652 3677777542 2
Q ss_pred hhccccc----e-eccCCCCC---HHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 434 ARRLQVP----I-FEKGYEKD---PAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 434 ~~~l~v~----l-~~~~~~~d---~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
.....+. + .......+ ....+.++++.+++. .. +..+...||||+|++.|+++|+. +|+++|| |
T Consensus 103 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~-----~p~lllL-D 176 (268)
T PRK10419 103 NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAV-----EPKLLIL-D 176 (268)
T ss_pred CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhc-----CCCEEEE-e
Confidence 1111110 0 00001111 123456777777664 22 34444559999999999999994 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+|||+..+. .+.+.|..+.... +.+.|++|+
T Consensus 177 EPt~~LD~~~~~-~~~~~l~~~~~~~---~~tiiivsH 210 (268)
T PRK10419 177 EAVSNLDLVLQA-GVIRLLKKLQQQF---GTACLFITH 210 (268)
T ss_pred CCCcccCHHHHH-HHHHHHHHHHHHc---CcEEEEEEC
Confidence 999999998764 4447777765432 567777776
No 245
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-19 Score=183.82 Aligned_cols=159 Identities=18% Similarity=0.259 Sum_probs=113.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh--h---CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~--~---~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||||||||++.|+|++. | ++|+|.+.+.++. ++++++|...
T Consensus 18 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 18 HAVKDVSMDFPENS--VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 48999999999999 999999999999999999999986 4 5899999987652 2677777543
Q ss_pred hhh------ccccceeccC-CC-CCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 433 HAR------RLQVPIFEKG-YE-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 433 ~~~------~l~v~l~~~~-~~-~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
... ++.+.+...+ .. .+....+.++++.+++.. .+..+-+.||||+|++.|+++|.. +|+++
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~-----~p~ll 170 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV-----KPEVI 170 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc-----CCCEE
Confidence 222 2221111111 11 112244566666666532 123344559999999999999994 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 171 ll-DEP~~gLD~~~~~-~l~~~l~~~~~-----~~tiiivsH 205 (252)
T PRK14256 171 LM-DEPASALDPISTL-KIEELIEELKE-----KYTIIIVTH 205 (252)
T ss_pred EE-cCCcccCCHHHHH-HHHHHHHHHHh-----CCcEEEEEC
Confidence 98 9999999998864 44477777753 346677766
No 246
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=1.4e-19 Score=179.46 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=108.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~ 434 (589)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. .++++.|...+.
T Consensus 14 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQ--LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 458999999999999 99999999999999999999999999999999886531 267777765322
Q ss_pred -----hccccceeccCCCCCHHHHHHHHHHHhcccC------------CCccccccCccccccHHHHHHHHhhhhhcCCC
Q 007789 435 -----RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG------------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 497 (589)
Q Consensus 435 -----~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~------------~d~vliDTSGg~qqr~~LaraL~kl~~~~~Pd 497 (589)
+++... . .... ....++++.+++.. .+..+...||||+|++.|+++|+. +|+
T Consensus 92 ~~t~~~nl~~~--~---~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~ 160 (218)
T cd03290 92 NATVEENITFG--S---PFNK-QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ-----NTN 160 (218)
T ss_pred cccHHHHHhhc--C---cCCH-HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh-----CCC
Confidence 111111 0 1111 11223333333211 112334559999999999999995 999
Q ss_pred EEEEEecCCCCCCHHHHHHHHHH-HHHHhhcCCCCCCccEEEEcc
Q 007789 498 LVLFVGEALVGNDAVDQLSKFNQ-KLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 498 lILLVDEPt~GlD~~~q~~~f~~-~l~~l~~~~~~~~it~IIlTK 541 (589)
++|| ||||+|||+..+...++. .+..+.. .+.+.|++|+
T Consensus 161 illl-DEPt~~LD~~~~~~l~~~~ll~~~~~----~~~tii~~sH 200 (218)
T cd03290 161 IVFL-DDPFSALDIHLSDHLMQEGILKFLQD----DKRTLVLVTH 200 (218)
T ss_pred EEEE-eCCccccCHHHHHHHHHHHHHHHHhc----CCCEEEEEeC
Confidence 9998 999999999877544421 4444433 2567777776
No 247
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.80 E-value=9.2e-20 Score=203.31 Aligned_cols=154 Identities=20% Similarity=0.147 Sum_probs=115.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhh-----hh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTH-----AR 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~-----~~ 435 (589)
.+|+++|+++++|+ .++||||+||||||+++.|+|++.|++|+|.++|.|+. ++++|+|...+ .+
T Consensus 349 ~vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~e 426 (529)
T TIGR02868 349 PVLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRD 426 (529)
T ss_pred ceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHH
Confidence 38999999999999 99999999999999999999999999999999998875 47888887643 34
Q ss_pred ccccceeccCCCCCHHHHHHHHHHHhccc--------CCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 436 RLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 436 ~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
++.. .. ...++ +.+.++++.+++. +++..+-+ .||||+||++|||+|.+ +|++++| |
T Consensus 427 NI~~--g~--~~~~~-e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~-----~~~iliL-D 495 (529)
T TIGR02868 427 NLRL--GR--PDATD-EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA-----DAPILLL-D 495 (529)
T ss_pred HHhc--cC--CCCCH-HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc-----CCCEEEE-e
Confidence 3322 11 11122 3345566655432 34544332 49999999999999996 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||++||+...... .+.+..+. .+.|.|++|+
T Consensus 496 E~TSaLD~~te~~I-~~~l~~~~-----~~~TvIiItH 527 (529)
T TIGR02868 496 EPTEHLDAGTESEL-LEDLLAAL-----SGKTVVVITH 527 (529)
T ss_pred CCcccCCHHHHHHH-HHHHHHhc-----CCCEEEEEec
Confidence 99999999876433 35554432 2578888876
No 248
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=186.21 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=110.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|.+.+|+ +++|+|+||+|||||+++|+|++.+ ..|+|.+.+.++. ++++++|...
T Consensus 34 ~~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 34 LALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred EEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 48999999999999 9999999999999999999999863 5899999987652 3677777542
Q ss_pred h-----hhccccceeccCCCCCHHHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 433 H-----ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+ .+++........+.......+.++++.+++. . .+..+-..||||+|++.|+++|+. +|+++||
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~-----~p~lllL- 185 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM-----KPDVLLM- 185 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh-----CCCEEEE-
Confidence 2 2222111111111111123334455555432 1 223334459999999999999995 9999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 186 DEPt~~LD~~~~~-~l~~~L~~~~~-----~~tiii~sH 218 (274)
T PRK14265 186 DEPCSALDPISTR-QVEELCLELKE-----QYTIIMVTH 218 (274)
T ss_pred eCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 9999999999874 44477776643 345666665
No 249
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.7e-19 Score=182.57 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=111.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHh---Hhh--CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW---LLQ--HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl---l~~--~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+ +++ +.|+|.+.+.++. ++++++|...
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 17 HALKGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred eEEeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 48999999999999 9999999999999999999997 344 4899999987753 2677777543
Q ss_pred h-----hhccccceeccCCCCC--HHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~d--~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+ .+++...+...+.... ....+.++++.+++.. .+..+-..||||+|++.|+++|+. +|+++|
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lll 169 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV-----SPSVLL 169 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 2 2222111101111111 1234556677666532 123334559999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 170 L-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiiivtH 203 (250)
T PRK14245 170 M-DEPASALDPISTA-KVEELIHELKK-----DYTIVIVTH 203 (250)
T ss_pred E-eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEeC
Confidence 8 9999999999874 44577776642 456666665
No 250
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6.1e-20 Score=183.79 Aligned_cols=176 Identities=21% Similarity=0.207 Sum_probs=117.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l-- 437 (589)
.+|++++|.+.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. .+++++|...+...-
T Consensus 15 ~~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 15 PVLKDVSFTIPAGK--KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 48999999999999 99999999999999999999999999999999887652 267777765332210
Q ss_pred -ccceeccCCCCCHHHHHHHHHHHhccc--------CC----CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 438 -QVPIFEKGYEKDPAIVAKEAIQEATRN--------GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 438 -~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~----d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
++.+... ...... ...++..+++. ++ ...+...|||++|++.|+++|+. +|+++|| ||
T Consensus 93 ~nl~~~~~--~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~-----~p~llll-DE 163 (236)
T cd03253 93 YNIRYGRP--DATDEE-VIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK-----NPPILLL-DE 163 (236)
T ss_pred HHHhhcCC--CCCHHH-HHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-eC
Confidence 1111100 111111 12222221111 11 11233559999999999999995 9999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||+|||+..+. .+.+.|..+.. +.+.|++|+-... +. . .--+.++..|+-+
T Consensus 164 P~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sh~~~~-------~~---~-~d~~~~l~~g~i~ 214 (236)
T cd03253 164 ATSALDTHTER-EIQAALRDVSK-----GRTTIVIAHRLST-------IV---N-ADKIIVLKDGRIV 214 (236)
T ss_pred CcccCCHHHHH-HHHHHHHHhcC-----CCEEEEEcCCHHH-------HH---h-CCEEEEEECCEEE
Confidence 99999998864 44466655532 5667777762221 11 1 2356777777654
No 251
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=182.98 Aligned_cols=180 Identities=20% Similarity=0.183 Sum_probs=123.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh---hCCcEEEEcccccC---------ccchhhhhHhh---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTF---------RSGAVEQLRTH--- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~---~~~GkV~l~~~Dt~---------RigaveQL~~~--- 433 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|++. |+.|+|.+.+.++. ++++++|...+
T Consensus 16 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~ 93 (246)
T PRK14269 16 QALFDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93 (246)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccc
Confidence 58999999999999 999999999999999999999874 68999999998763 26777776432
Q ss_pred --hhccccceeccCC--C-CCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 434 --ARRLQVPIFEKGY--E-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 434 --~~~l~v~l~~~~~--~-~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
.+++.+.....+. . ......+.++++.+++.. .+......|||++|++.|+++|.. +|+++|| |
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lllL-D 167 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI-----KPKLLLL-D 167 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-c
Confidence 2222111100011 0 112233456677766632 233344569999999999999995 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
|||+|+|+..+. .|.+.|..+.. +.+.+++|+ |.- ......--|..+..|+-+
T Consensus 168 EP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~tH-~~~---------~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 168 EPTSALDPISSG-VIEELLKELSH-----NLSMIMVTH-NMQ---------QGKRVADYTAFFHLGELI 220 (246)
T ss_pred CCcccCCHHHHH-HHHHHHHHHhC-----CCEEEEEec-CHH---------HHHhhCcEEEEEECCEEE
Confidence 999999998764 44467766642 557777776 221 112223356666666654
No 252
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.4e-19 Score=181.00 Aligned_cols=175 Identities=20% Similarity=0.206 Sum_probs=117.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|++|+|.+.+.++. ++++++|...+ .
T Consensus 16 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (234)
T cd03251 16 PVLRDISLDIPAGE--TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVA 93 (234)
T ss_pred cceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHH
Confidence 48999999999999 99999999999999999999999999999999886642 26777765432 2
Q ss_pred hccccceeccCCCCCHHHH--------HHHHHHHh--cccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 435 RRLQVPIFEKGYEKDPAIV--------AKEAIQEA--TRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~i--------a~~al~~a--~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
+++. +....+ ..... +.+.++.+ ++... +..+...|||++|++.|+++|+. +|+++|| |
T Consensus 94 enl~--~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-----~p~lllL-D 163 (234)
T cd03251 94 ENIA--YGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK-----DPPILIL-D 163 (234)
T ss_pred HHhh--ccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-e
Confidence 2221 111111 11111 11122211 11111 22334559999999999999994 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
|||+|||+..+. .|.+.|..+.. +.+.|++|+ |.. .... .-.|.++..|+-+
T Consensus 164 EP~~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sh-~~~---------~~~~-~d~v~~l~~G~i~ 215 (234)
T cd03251 164 EATSALDTESER-LVQAALERLMK-----NRTTFVIAH-RLS---------TIEN-ADRIVVLEDGKIV 215 (234)
T ss_pred CccccCCHHHHH-HHHHHHHHhcC-----CCEEEEEec-CHH---------HHhh-CCEEEEecCCeEe
Confidence 999999999864 44567766642 456666665 321 0111 3456777777654
No 253
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.80 E-value=1.9e-19 Score=179.23 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=111.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA----- 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~----- 434 (589)
.+|+++++.+.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 28 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 105 (226)
T cd03248 28 LVLQDVSFTLHPGE--VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQ 105 (226)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHH
Confidence 48999999999999 99999999999999999999999999999999987642 267777765332
Q ss_pred hccccceeccCCCCCH-HH-----HHHHHHHHh--cccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 435 RRLQVPIFEKGYEKDP-AI-----VAKEAIQEA--TRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~-~~-----ia~~al~~a--~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+++..... ...... .. .+.+.++.+ ++... +..+...||||+|++.|+++|.. +|+++|| |||
T Consensus 106 ~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~-----~p~llll-DEP 177 (226)
T cd03248 106 DNIAYGLQ--SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR-----NPQVLIL-DEA 177 (226)
T ss_pred HHhccccC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-eCC
Confidence 22221111 000000 01 123344544 33332 33344459999999999999995 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+|||+..+ ..+.+.+..+.. +.+.+++|+
T Consensus 178 t~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sh 207 (226)
T cd03248 178 TSALDAESE-QQVQQALYDWPE-----RRTVLVIAH 207 (226)
T ss_pred cccCCHHHH-HHHHHHHHHHcC-----CCEEEEEEC
Confidence 999999986 455577766643 356667665
No 254
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=184.24 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=113.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++| +.|+|.+.+.++. .+|+++|...
T Consensus 26 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 26 QALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 48999999999999 9999999999999999999999875 7999999886642 2677777543
Q ss_pred h-----hhccccceeccCCC-CCHHHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 433 H-----ARRLQVPIFEKGYE-KDPAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~-~d~~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
. .+++.+.....+.. .+....+.++++.+++. . .+......||||+|++.|+++|+. +|+++||
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~-----~p~llll 178 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV-----KPKIILF 178 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE
Confidence 2 22222111001111 11123455677766552 1 233334559999999999999994 9999998
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 179 -DEPt~~LD~~~~~-~l~~~l~~l~~-----~~tiiivsH 211 (258)
T PRK14268 179 -DEPTSALDPISTA-RIEDLIMNLKK-----DYTIVIVTH 211 (258)
T ss_pred -eCCCcccCHHHHH-HHHHHHHHHhh-----CCEEEEEEC
Confidence 9999999999875 44477776642 456777776
No 255
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-19 Score=185.82 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=111.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|++. |+.|+|.+.+.++. ++++++|...
T Consensus 35 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 35 RAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred eeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 48999999999999 999999999999999999999864 68999999887642 3677777643
Q ss_pred h-----hhccccceeccCCCCC--HHHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~d--~~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+ .+++...+........ ....+.+++..+++. . .+..+-..||||+|++.|+++|+. +|+++|
T Consensus 113 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~-----~p~lll 187 (268)
T PRK14248 113 PFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM-----KPAVLL 187 (268)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC-----CCCEEE
Confidence 2 2222211100000011 123344556555542 1 123344459999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|.++.. +.+.|++|+
T Consensus 188 L-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiii~tH 221 (268)
T PRK14248 188 L-DEPASALDPISNA-KIEELITELKE-----EYSIIIVTH 221 (268)
T ss_pred E-cCCCcccCHHHHH-HHHHHHHHHhc-----CCEEEEEEe
Confidence 8 9999999999864 44577777643 346667666
No 256
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.7e-19 Score=182.57 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=112.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++ |..|+|.+.+.++. .++++.|...
T Consensus 18 ~~l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 18 EALHGISLDFEEKE--LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 58999999999999 999999999999999999999987 47999999987652 2667766542
Q ss_pred h-----hhccccceeccCCC-CC-HHHHHHHHHHHhccc-----CCCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGYE-KD-PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~-~d-~~~ia~~al~~a~l~-----~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+ .+++.......+.. .+ ....+.++++.+++. ..+..+...||||+|++.|+++|.. +|+++|
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~-----~p~lll 170 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV-----RPKVVL 170 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 2 22221111000111 11 123345566666552 1234445569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+ ..+.+.|..+.. +.+.|++|+
T Consensus 171 l-DEP~~~LD~~~~-~~l~~~l~~~~~-----~~tiiiisH 204 (251)
T PRK14251 171 L-DEPTSALDPISS-SEIEETLMELKH-----QYTFIMVTH 204 (251)
T ss_pred e-cCCCccCCHHHH-HHHHHHHHHHHc-----CCeEEEEEC
Confidence 8 999999999876 455577776642 356777776
No 257
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=7.2e-20 Score=204.50 Aligned_cols=182 Identities=14% Similarity=0.138 Sum_probs=128.8
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHh--h
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~--~ 433 (589)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++ ++|+|.+.+.++. ++|+++|... +
T Consensus 299 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGE--TLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 358999999999999 999999999999999999999984 8999999986642 2788888642 2
Q ss_pred h------hccccceeccC--CC-CCHHHHHHHHHHHhccc-C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 434 A------RRLQVPIFEKG--YE-KDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 434 ~------~~l~v~l~~~~--~~-~d~~~ia~~al~~a~l~-~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
. +++...+.... .. .+....+.++++.+++. . .+..+-..||||+||+.||++|+. +|+++||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~llll- 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALIL-----KPSLIIL- 449 (529)
T ss_pred CCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhC-----CCCEEEe-
Confidence 2 22221111010 11 11234566778887774 2 234444559999999999999994 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||||+|||+..+...+ +.|.+++... +.++|++|+ |.. .+....-.|.++-.|+-+
T Consensus 450 DEPt~~LD~~~~~~l~-~~l~~~~~~~---~~tvi~vsH-d~~---------~~~~~~d~i~~l~~G~i~ 505 (529)
T PRK15134 450 DEPTSSLDKTVQAQIL-ALLKSLQQKH---QLAYLFISH-DLH---------VVRALCHQVIVLRQGEVV 505 (529)
T ss_pred eCCccccCHHHHHHHH-HHHHHHHHhh---CCEEEEEeC-CHH---------HHHHhcCeEEEEECCEEE
Confidence 9999999999875444 7777776432 677788877 321 112223467777777654
No 258
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.80 E-value=9.9e-20 Score=202.91 Aligned_cols=161 Identities=19% Similarity=0.145 Sum_probs=115.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH--hhCCcEEEEc-----------------------ccc---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMA-----------------------ACD--- 420 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll--~~~~GkV~l~-----------------------~~D--- 420 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|++ .|+.|+|.+. +.+
T Consensus 14 ~~l~~is~~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 14 EVLKNISFTIEEGE--VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred EeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 58999999999999 99999999999999999999997 6999999986 111
Q ss_pred ----c------------Cccchhhhh-Hhh------hhccccceeccCCCC-CHHHHHHHHHHHhcccCCCcc-ccccCc
Q 007789 421 ----T------------FRSGAVEQL-RTH------ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVV-LVDTAG 475 (589)
Q Consensus 421 ----t------------~RigaveQL-~~~------~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~v-liDTSG 475 (589)
. .++++++|. ..+ .+++..++...+... +....+.++++.+++..+... +-..||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 1 126777774 222 222221111111111 123456677888777654333 444599
Q ss_pred cccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 476 RMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 476 g~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+||+.||++|+. +|+++|| ||||+|||+..+... .+.|.++.... +.++|++|+
T Consensus 172 Gq~qrv~iA~al~~-----~p~lllL-DEPt~~LD~~~~~~l-~~~l~~l~~~~---g~tviivtH 227 (520)
T TIGR03269 172 GEKQRVVLARQLAK-----EPFLFLA-DEPTGTLDPQTAKLV-HNALEEAVKAS---GISMVLTSH 227 (520)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEe-eCCcccCCHHHHHHH-HHHHHHHHHhc---CcEEEEEeC
Confidence 99999999999994 9999998 999999999987544 46777775432 667788777
No 259
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.8e-19 Score=184.18 Aligned_cols=159 Identities=21% Similarity=0.228 Sum_probs=112.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|.+.+|+ +++|+|+||+|||||++.|+|++.| ..|+|.+.+.++. ++++++|...
T Consensus 22 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 22 MAVRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 58999999999999 9999999999999999999999986 6899999987752 2677777643
Q ss_pred hh-----hccccceeccCCCCCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 433 HA-----RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 433 ~~-----~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+. +++.+.........+....+.++++.+++.. .+......||||+|++.|+++|.. +|+++||
T Consensus 100 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll- 173 (261)
T PRK14263 100 PFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT-----EPEVLLL- 173 (261)
T ss_pred cccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 22 2221111101111122234566677665532 122233459999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+.. +.+.|.++.. +.+.|++|+
T Consensus 174 DEPtsgLD~~~~~~-l~~~l~~~~~-----~~tii~isH 206 (261)
T PRK14263 174 DEPCSALDPIATRR-VEELMVELKK-----DYTIALVTH 206 (261)
T ss_pred eCCCccCCHHHHHH-HHHHHHHHhc-----CCeEEEEeC
Confidence 99999999998754 4477776642 345566655
No 260
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.80 E-value=2.7e-19 Score=196.68 Aligned_cols=186 Identities=20% Similarity=0.169 Sum_probs=139.2
Q ss_pred cccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-----------CccchhhhhHh--
Q 007789 366 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRT-- 432 (589)
Q Consensus 366 ~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-----------~RigaveQL~~-- 432 (589)
..+.++++|||.+.+|+ +++|||++||||||+.+.|+|++.|++|.|.+.+.|+ .++-+++|.+.
T Consensus 302 ~~~~Av~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 302 GEVKAVDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred cceeeeeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 34688999999999999 9999999999999999999999999999999999872 12455556442
Q ss_pred ------hhhccccceeccCC--CCCHHHHHHHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 433 ------HARRLQVPIFEKGY--EKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 433 ------~~~~l~v~l~~~~~--~~d~~~ia~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
..+.+.-|+..... .....+.+.++++..++.. .+.++-..|||++||++|||+|+ .+|.+|++
T Consensus 380 LnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa-----~~P~lli~- 453 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA-----LEPKLLIL- 453 (539)
T ss_pred cCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHh-----cCCCEEEe-
Confidence 22222222221111 1223345677788877764 45666677999999999999999 49999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
|||++.||+..|++.+ +.|.++.+.. +++.++||+ |. +++....--|+.+-.|+-++
T Consensus 454 DEp~SaLDvsvqa~Vl-nLl~~lq~e~---g~t~lfISH-Dl---------~vV~~i~drv~vm~~G~iVE 510 (539)
T COG1123 454 DEPVSALDVSVQAQVL-NLLKDLQEEL---GLTYLFISH-DL---------AVVRYIADRVAVMYDGRIVE 510 (539)
T ss_pred cCCccccCHHHHHHHH-HHHHHHHHHh---CCEEEEEeC-CH---------HHHHhhCceEEEEECCeEEE
Confidence 9999999999998777 6777777654 999999998 42 23344444677777777664
No 261
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2e-19 Score=176.86 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=105.1
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh---hCCcEEEEcccccCc--------cchhhhhHhhhh
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTFR--------SGAVEQLRTHAR 435 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~---~~~GkV~l~~~Dt~R--------igaveQL~~~~~ 435 (589)
...+|++++|.+.+|+ +++|+||||||||||+++|+|+++ |++|+|.+.+.++.+ ++++.|...+..
T Consensus 19 ~~~il~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (202)
T cd03233 19 KIPILKDFSGVVKPGE--MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFP 96 (202)
T ss_pred CceeeeeEEEEECCCc--EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCC
Confidence 3468999999999999 999999999999999999999999 889999999987643 333333211111
Q ss_pred ccccceeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 436 RLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 436 ~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
.+ .. .+.+........+..+.+.||||+|++.|+++|+. +|+++|| ||||+|+|+..+.
T Consensus 97 ~~-----------tv----~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~-----~p~llll-DEPt~~LD~~~~~ 155 (202)
T cd03233 97 TL-----------TV----RETLDFALRCKGNEFVRGISGGERKRVSIAEALVS-----RASVLCW-DNSTRGLDSSTAL 155 (202)
T ss_pred CC-----------cH----HHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhh-----CCCEEEE-cCCCccCCHHHHH
Confidence 10 11 11111110001344455669999999999999995 9999888 9999999999764
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.+.++.... +.+.+|++.
T Consensus 156 -~~~~~l~~~~~~~---~~t~ii~~~ 177 (202)
T cd03233 156 -EILKCIRTMADVL---KTTTFVSLY 177 (202)
T ss_pred -HHHHHHHHHHHhC---CCEEEEEEc
Confidence 4557777775432 445555544
No 262
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=2.2e-19 Score=176.55 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=109.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l-- 437 (589)
.+|+++++.+.+|+ +++|+|+||+|||||++.|+|+++|..|+|.+.+.++. ++++++|...+...-
T Consensus 22 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 99 (207)
T cd03369 22 PVLKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR 99 (207)
T ss_pred ccccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHH
Confidence 48999999999999 99999999999999999999999999999999987651 377777765332110
Q ss_pred -ccceeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 438 -QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 438 -~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
++.++. .... ..+.++++ .+..+...|||++|++.|+++|.. +|+++|| ||||+|||+..+.
T Consensus 100 ~~l~~~~---~~~~-~~~~~~l~------~~~~~~~LS~G~~qrv~laral~~-----~p~llll-DEP~~~LD~~~~~- 162 (207)
T cd03369 100 SNLDPFD---EYSD-EEIYGALR------VSEGGLNLSQGQRQLLCLARALLK-----RPRVLVL-DEATASIDYATDA- 162 (207)
T ss_pred HHhcccC---CCCH-HHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhh-----CCCEEEE-eCCcccCCHHHHH-
Confidence 111111 1111 12223332 233445569999999999999995 9999998 9999999998864
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.|.++.. +.+.|++|+
T Consensus 163 ~l~~~l~~~~~-----~~tiii~th 182 (207)
T cd03369 163 LIQKTIREEFT-----NSTILTIAH 182 (207)
T ss_pred HHHHHHHHhcC-----CCEEEEEeC
Confidence 44466665531 567777776
No 263
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.5e-19 Score=173.09 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=98.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|.+|+|.+.+.++.+.... .+...+++ .......
T Consensus 16 ~~l~~i~~~i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~----~~~~~i~~--~~~~~~~ 87 (171)
T cd03228 16 PVLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE----SLRKNIAY--VPQDPFL 87 (171)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHH----HHHhhEEE--EcCCchh
Confidence 48999999999999 9999999999999999999999999999999998776332110 01111111 1100000
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
.+..+ .+. . .|||++|++.|+++|+. +|+++|| ||||+|||+..+. .+.+.+..+..
T Consensus 88 ~~~t~----~e~--------l---LS~G~~~rl~la~al~~-----~p~llll-DEP~~gLD~~~~~-~l~~~l~~~~~- 144 (171)
T cd03228 88 FSGTI----REN--------I---LSGGQRQRIAIARALLR-----DPPILIL-DEATSALDPETEA-LILEALRALAK- 144 (171)
T ss_pred ccchH----HHH--------h---hCHHHHHHHHHHHHHhc-----CCCEEEE-ECCCcCCCHHHHH-HHHHHHHHhcC-
Confidence 00011 010 0 89999999999999994 9999998 9999999998764 44466666532
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
+.+.+++|+
T Consensus 145 ----~~tii~~sh 153 (171)
T cd03228 145 ----GKTVIVIAH 153 (171)
T ss_pred ----CCEEEEEec
Confidence 356666665
No 264
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=4.6e-19 Score=179.69 Aligned_cols=142 Identities=16% Similarity=0.151 Sum_probs=118.6
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCC
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 446 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~ 446 (589)
.+.++++|||.+.+|+ +++|||.+||||||+-+.|.+++.|++|+|.+.|.|+....
T Consensus 25 ~v~avd~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------------------- 81 (268)
T COG4608 25 YVKAVDGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------------------- 81 (268)
T ss_pred ceEEecceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---------------------
Confidence 4688999999999999 99999999999999999999999999999999999964433
Q ss_pred CCCHHHHHHHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 007789 447 EKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 524 (589)
Q Consensus 447 ~~d~~~ia~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~ 524 (589)
.....+.+.+.++.+++.. +...+...||||+||+.|||||+ .+|+++++ |||++.||...|++.. ..|.+
T Consensus 82 ~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALa-----l~P~liV~-DEpvSaLDvSiqaqIl-nLL~d 154 (268)
T COG4608 82 KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA-----LNPKLIVA-DEPVSALDVSVQAQIL-NLLKD 154 (268)
T ss_pred hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHh-----hCCcEEEe-cCchhhcchhHHHHHH-HHHHH
Confidence 1123345666777766543 34566667999999999999999 59999999 9999999999888776 66777
Q ss_pred hhcCCCCCCccEEEEcc
Q 007789 525 LSSSPNPQLIDGILLTK 541 (589)
Q Consensus 525 l~~~~~~~~it~IIlTK 541 (589)
+.... +++.+.+|+
T Consensus 155 lq~~~---~lt~lFIsH 168 (268)
T COG4608 155 LQEEL---GLTYLFISH 168 (268)
T ss_pred HHHHh---CCeEEEEEE
Confidence 77654 899999988
No 265
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.7e-19 Score=182.39 Aligned_cols=180 Identities=18% Similarity=0.219 Sum_probs=120.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-----CcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-----~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|.+.+|+ +++|+|+||+|||||+++|+|++.|+ .|+|.+.+.++. ++++++|...
T Consensus 18 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 18 QAVKNVNLDVQRGT--VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred EeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 58999999999999 99999999999999999999999864 799999886642 3677777643
Q ss_pred hhh------ccccceeccCCCCC--HHHHHHHHHHHhccc-----CCCccccccCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 433 HAR------RLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 433 ~~~------~l~v~l~~~~~~~d--~~~ia~~al~~a~l~-----~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
+.. ++............ ..+.+.+.++.+++. ..+..+...||||+|++.|+++|.. +|+++
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~ll 170 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV-----EPEIL 170 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc-----CCCEE
Confidence 322 22111110110011 112333444444321 1233444569999999999999995 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
|| ||||+|||+..+. .+.+.|..+.. +.+.+++|+ |. .......-.|.++..|+-+
T Consensus 171 ll-DEP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sH-~~---------~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 171 LM-DEPTSALDPASTA-RIEDLMTDLKK-----VTTIIIVTH-NM---------HQAARVSDTTSFFLVGDLV 226 (252)
T ss_pred EE-eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEeC-CH---------HHHHHhCCEEEEEECCEEE
Confidence 98 9999999998764 44477776642 356677666 32 1122223456777666654
No 266
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.3e-19 Score=181.65 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=113.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++| ..|+|.+.+.++. ++++++|...
T Consensus 18 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 18 QALNDINLPIYENK--ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred eeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 48999999999999 9999999999999999999999875 7899999987752 2677777653
Q ss_pred hh-----hccccceeccCCCC----CHHHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHHhhhhhcCCCE
Q 007789 433 HA-----RRLQVPIFEKGYEK----DPAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 498 (589)
Q Consensus 433 ~~-----~~l~v~l~~~~~~~----d~~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~Pdl 498 (589)
+. +++... ...++. .....+.++++.+++. . .+..+.+.||||+|++.|+++|+. +|++
T Consensus 96 ~~~~tv~enl~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~l 168 (251)
T PRK14270 96 PFPMSIYDNVAYG--PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV-----KPDV 168 (251)
T ss_pred cCCCcHHHHHHhH--HHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc-----CCCE
Confidence 22 222111 111111 1123455667776542 1 233445669999999999999995 9999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 499 ILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 169 lll-DEP~~~LD~~~~~-~l~~~L~~~~~-----~~tiiivsH 204 (251)
T PRK14270 169 ILM-DEPTSALDPISTL-KIEDLMVELKK-----EYTIVIVTH 204 (251)
T ss_pred EEE-eCCcccCCHHHHH-HHHHHHHHHHh-----CCeEEEEEc
Confidence 988 9999999998764 44577776653 245677765
No 267
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2e-19 Score=181.83 Aligned_cols=159 Identities=20% Similarity=0.266 Sum_probs=111.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|++++ +.|+|.+.+.++. +++++.|...
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 17 QALKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 48999999999999 9999999999999999999998763 6899999987653 2677777543
Q ss_pred hhh-----ccccceeccCC-CC-CHHHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 HAR-----RLQVPIFEKGY-EK-DPAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~~~-----~l~v~l~~~~~-~~-d~~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+.. ++.+.....+. .. .....+.++++.+++. . .+......||||+|++.|+++|.. +|+++|
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lll 169 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV-----EPEVLL 169 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 221 11111000111 11 1223445556665542 1 123334559999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. +.+.+++|+
T Consensus 170 l-DEP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sH 203 (250)
T PRK14240 170 M-DEPTSALDPISTL-KIEELIQELKK-----DYTIVIVTH 203 (250)
T ss_pred E-eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEEe
Confidence 8 9999999999875 44477766642 456677666
No 268
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.79 E-value=2.4e-19 Score=171.17 Aligned_cols=132 Identities=19% Similarity=0.106 Sum_probs=100.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++|+.|+|.+.+. .++++++|...+. ..
T Consensus 15 ~~l~~i~l~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q~~~~~------------~~ 78 (166)
T cd03223 15 VLLKDLSFEIKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQRPYLP------------LG 78 (166)
T ss_pred eeeecCeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECCCCccc------------cc
Confidence 48999999999999 99999999999999999999999999999998764 4577877753210 00
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
. +.+-+... .....|||++|++.|+++|+. +|+++|| ||||+|||+..+.. +.+.+..+
T Consensus 79 ---t-v~~nl~~~-------~~~~LS~G~~~rv~laral~~-----~p~~lll-DEPt~~LD~~~~~~-l~~~l~~~--- 137 (166)
T cd03223 79 ---T-LREQLIYP-------WDDVLSGGEQQRLAFARLLLH-----KPKFVFL-DEATSALDEESEDR-LYQLLKEL--- 137 (166)
T ss_pred ---c-HHHHhhcc-------CCCCCCHHHHHHHHHHHHHHc-----CCCEEEE-ECCccccCHHHHHH-HHHHHHHh---
Confidence 0 11111110 234569999999999999995 9999998 99999999988643 33555443
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
+.+.+++|+
T Consensus 138 ----~~tiiivsh 146 (166)
T cd03223 138 ----GITVISVGH 146 (166)
T ss_pred ----CCEEEEEeC
Confidence 356677776
No 269
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.4e-19 Score=180.46 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=122.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-----CcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-----~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+ .|+|.+.+.++. ++++++|...
T Consensus 18 ~il~~~s~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 18 QVLKNINMDFPERQ--ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred eEecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 48999999999999 99999999999999999999999987 599999886642 2777777643
Q ss_pred h-----hhccccceeccCCC--CCHHHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGYE--KDPAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~--~d~~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+ .+++.+.....+.. ......+..+++.+++. . .+..+...||||+|++.|+++|+. +|+++|
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~-----~p~lll 170 (251)
T PRK14249 96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI-----EPEVIL 170 (251)
T ss_pred cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 2 22222111111111 11123344455555432 1 233444569999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
| ||||+|||+..+. .+.+.|.++.. +.+.+++|+ |. .......--|.++..|+.+
T Consensus 171 L-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tilivsh-~~---------~~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14249 171 M-DEPCSALDPVSTM-RIEELMQELKQ-----NYTIAIVTH-NM---------QQAARASDWTGFLLTGDLV 225 (251)
T ss_pred E-eCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC-CH---------HHHHhhCCEEEEEeCCeEE
Confidence 8 9999999999864 45577776631 467777776 22 1112223456677777654
No 270
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.7e-19 Score=182.11 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=112.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh--h---CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~--~---~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++. | +.|+|.+.+.++. ++|+++|...
T Consensus 26 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 26 HALKNINLSIPENE--VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred eeEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 58999999999999 999999999999999999999987 3 5899999987652 2677777543
Q ss_pred h-----hhccccceeccCCC-CCH---HHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCE
Q 007789 433 H-----ARRLQVPIFEKGYE-KDP---AIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 498 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~-~d~---~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~Pdl 498 (589)
+ .+++. +.....+ ... ...+.++++.+++.. .+......||||+|++.|+++|+. +|++
T Consensus 104 ~~~~tv~enl~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~-----~p~l 176 (259)
T PRK14274 104 PFPQSIFDNVA--YGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT-----NPDV 176 (259)
T ss_pred ccccCHHHHHH--hHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc-----CCCE
Confidence 2 22221 1111111 111 233455666665532 233344559999999999999995 9999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 499 ILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 177 lll-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiiivtH 212 (259)
T PRK14274 177 LLM-DEPTSALDPVSTR-KIEELILKLKE-----KYTIVIVTH 212 (259)
T ss_pred EEE-cCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEEc
Confidence 988 9999999998764 55577777642 356677766
No 271
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.79 E-value=2.1e-19 Score=181.85 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=113.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHh--HhhCCcEEEEcccccCc----------cchhhhhHhhhh-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTFR----------SGAVEQLRTHAR- 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl--l~~~~GkV~l~~~Dt~R----------igaveQL~~~~~- 435 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+ +.|++|+|.+.+.++.+ ++++.|......
T Consensus 21 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 98 (252)
T CHL00131 21 EILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPG 98 (252)
T ss_pred EeeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccc
Confidence 48999999999999 9999999999999999999997 57899999998876522 344555432211
Q ss_pred -----ccccceecc----CCC-CCH---HHHHHHHHHHhccc-C-CCccccc-cCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 436 -----RLQVPIFEK----GYE-KDP---AIVAKEAIQEATRN-G-SDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 436 -----~l~v~l~~~----~~~-~d~---~~ia~~al~~a~l~-~-~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
.+....... ... .+. ...+.++++.+++. . .+..+.. .||||+|++.|+++|+. +|+++
T Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~ll 173 (252)
T CHL00131 99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL-----DSELA 173 (252)
T ss_pred ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc-----CCCEE
Confidence 111100000 000 111 23345667776664 2 2444444 79999999999999994 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|| ||||+|||+..+. .|.+.|..+... +.+.|++|+
T Consensus 174 ll-DEPt~~LD~~~~~-~l~~~l~~~~~~----g~tii~~tH 209 (252)
T CHL00131 174 IL-DETDSGLDIDALK-IIAEGINKLMTS----ENSIILITH 209 (252)
T ss_pred EE-cCCcccCCHHHHH-HHHHHHHHHHhC----CCEEEEEec
Confidence 98 9999999999864 444777776532 567777777
No 272
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3e-19 Score=180.59 Aligned_cols=159 Identities=18% Similarity=0.227 Sum_probs=112.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|++.| +.|+|.+.+.++. ++++++|...
T Consensus 17 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 17 KAVKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred eeEeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 47999999999999 9999999999999999999999874 7899999987642 3677777543
Q ss_pred hh-----hccccceeccCCCCC--HHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 HA-----RRLQVPIFEKGYEKD--PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~~-----~~l~v~l~~~~~~~d--~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+. +++.+.....+.... ....+.++++.+++.. .+..+...||||+|++.|+++|+. +|+++|
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~-----~p~lll 169 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV-----EPEVIL 169 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC-----CCCEEE
Confidence 22 222111111011111 1223455566555432 233445569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. +.+.+++|+
T Consensus 170 l-DEP~~~LD~~~~~-~l~~~l~~~~~-----~~tili~sH 203 (250)
T PRK14262 170 L-DEPTSALDPIATQ-RIEKLLEELSE-----NYTIVIVTH 203 (250)
T ss_pred E-eCCccccCHHHHH-HHHHHHHHHhc-----CcEEEEEeC
Confidence 8 9999999999864 45577776642 346667666
No 273
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.5e-19 Score=182.51 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=112.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++++ ..|+|.+.+.++. +++++.|...
T Consensus 21 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 21 KAIEGISMDIYRNK--VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred EeecceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 48999999999999 9999999999999999999999885 4799999987652 2677777543
Q ss_pred hh-----hccccceeccC-CC-CCHHHHHHHHHHHhccc-----CCCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 HA-----RRLQVPIFEKG-YE-KDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~~-----~~l~v~l~~~~-~~-~d~~~ia~~al~~a~l~-----~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+. +++........ +. ......+.++++.+++. ..+......|||++|++.|+++|+. +|+++|
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lll 173 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI-----KPKVLL 173 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 22 22111110011 11 11223455666666542 1233444569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. ..+.+++|+
T Consensus 174 L-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiii~tH 207 (259)
T PRK14260 174 M-DEPCSALDPIATM-KVEELIHSLRS-----ELTIAIVTH 207 (259)
T ss_pred E-cCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 8 9999999998864 44477766643 356677665
No 274
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.7e-19 Score=185.25 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=111.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++. |+.|+|.+.+.++. ++++++|...
T Consensus 53 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 53 EAVKKVNADILSKY--VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 48999999999999 999999999999999999999864 48999999886641 3677777542
Q ss_pred h-----hhccccceeccCCCC--CHHHHHHHHHHHhccc-----CCCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGYEK--DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~--d~~~ia~~al~~a~l~-----~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+ .+++.+.....+... .....+.++++.+++. ..+..+...||||+|++.|+++|+. +|+++|
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~-----~p~lll 205 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV-----EPEILL 205 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 2 222221110011111 1123445566665542 1234445569999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|.++.. +.+.|++|+
T Consensus 206 L-DEPt~gLD~~~~~-~l~~~L~~~~~-----~~tvIivsH 239 (286)
T PRK14275 206 L-DEPTSALDPKATA-KIEDLIQELRG-----SYTIMIVTH 239 (286)
T ss_pred E-eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEeC
Confidence 8 9999999998864 44477776643 346667665
No 275
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.6e-19 Score=179.88 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=111.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC----------ccchhhhhHhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF----------RSGAVEQLRTH 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~----------RigaveQL~~~ 433 (589)
.+|++++|++.+|+ +++|+||||+|||||+++|+|+++| ..|+|.+.+.++. +++++.|...+
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 17 QALKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred eeeecceEEecCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 48999999999999 9999999999999999999999886 4899999987652 26777775432
Q ss_pred h-----hccccceeccCCCCC--HHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 434 A-----RRLQVPIFEKGYEKD--PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 434 ~-----~~l~v~l~~~~~~~d--~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
. +++.+.....+.... ....+.++++.+++.. .+..+...|||++|++.|+++|.. +|+++||
T Consensus 95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~llll 169 (249)
T PRK14253 95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM-----EPDVILM 169 (249)
T ss_pred CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc-----CCCEEEE
Confidence 2 222111100010111 1123444555554321 223334559999999999999994 9999998
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|.++.. ..+.|++|+
T Consensus 170 -DEP~~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sh 202 (249)
T PRK14253 170 -DEPTSALDPIATH-KIEELMEELKK-----NYTIVIVTH 202 (249)
T ss_pred -eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEec
Confidence 9999999998764 55577777753 356677766
No 276
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.6e-19 Score=181.53 Aligned_cols=159 Identities=17% Similarity=0.249 Sum_probs=113.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||||||||++.|+|++. |++|+|.+.+.++. ++++++|...
T Consensus 34 ~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 34 EAIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred eeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 48999999999999 999999999999999999999986 47999999987652 2677777543
Q ss_pred h-----hhccccceeccCCCC--CHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGYEK--DPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~--d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+ .+++.......+... .....+.++++.+++.. .+..+...|||++|++.|+++|+. +|+++|
T Consensus 112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~-----~p~lll 186 (267)
T PRK14237 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV-----KPDILL 186 (267)
T ss_pred cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 2 222222111111111 11233455666665531 234445569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|.++.. +.+.|++|+
T Consensus 187 L-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiii~tH 220 (267)
T PRK14237 187 M-DEPASALDPISTM-QLEETMFELKK-----NYTIIIVTH 220 (267)
T ss_pred E-eCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEec
Confidence 8 9999999998764 44477776642 356677765
No 277
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.79 E-value=2.7e-19 Score=197.33 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=112.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc---cchhhhhHhhhhccccceeccC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAVEQLRTHARRLQVPIFEKG 445 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R---igaveQL~~~~~~l~v~l~~~~ 445 (589)
.+|++++|.+.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.+.+. .+...++ +..+++.+.....+
T Consensus 38 ~IL~nVSfsI~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~l-TV~EnL~l~~~~~~ 114 (549)
T PRK13545 38 YALNNISFEVPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQL-TGIENIELKGLMMG 114 (549)
T ss_pred eEEeeeEEEEeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCC-cHHHHHHhhhhhcC
Confidence 48999999999999 999999999999999999999999999999998866321 1111221 22333222110011
Q ss_pred CC-CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHH
Q 007789 446 YE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 523 (589)
Q Consensus 446 ~~-~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~ 523 (589)
.. ......+.++++.+++..+ +..+...||||+||+.||++|+. +|+++|| ||||+|||+..+. .+.+.|.
T Consensus 115 ~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~-----~P~LLLL-DEPTsgLD~~sr~-~LlelL~ 187 (549)
T PRK13545 115 LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHI-----NPDILVI-DEALSVGDQTFTK-KCLDKMN 187 (549)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHh-----CCCEEEE-ECCcccCCHHHHH-HHHHHHH
Confidence 11 1112344567777776544 33444559999999999999995 9999998 9999999998764 4447777
Q ss_pred HhhcCCCCCCccEEEEcc
Q 007789 524 DLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 524 ~l~~~~~~~~it~IIlTK 541 (589)
.+... +.+.|++|+
T Consensus 188 el~~~----G~TIIIVSH 201 (549)
T PRK13545 188 EFKEQ----GKTIFFISH 201 (549)
T ss_pred HHHhC----CCEEEEEEC
Confidence 66532 567777776
No 278
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.9e-19 Score=180.93 Aligned_cols=159 Identities=20% Similarity=0.216 Sum_probs=113.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++. |..|+|.+.+.++. ++++++|...
T Consensus 19 ~~l~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 19 QILFDINLDIYKRE--VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 58999999999999 999999999999999999999986 46899999886541 2677777543
Q ss_pred h-----hhccccceeccCCCCC---HHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 433 H-----ARRLQVPIFEKGYEKD---PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~d---~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
+ .+++.+.......... ....+.++++.+++.. .+..+...||||+|++.|+++|.. +|+++
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~-----~p~ll 171 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV-----KPTML 171 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc-----CCCEE
Confidence 2 2222111000111111 1233456667666542 123344569999999999999995 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 172 ll-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiiiisH 206 (251)
T PRK14244 172 LM-DEPCSALDPVATN-VIENLIQELKK-----NFTIIVVTH 206 (251)
T ss_pred EE-eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEeC
Confidence 98 9999999998764 44477776642 567777776
No 279
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.4e-19 Score=181.79 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=113.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-----CcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-----~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++|. .|+|.+.+.++. .+++++|...
T Consensus 21 ~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 21 KILEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred eEeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 48999999999999 99999999999999999999999985 799999887741 1566666532
Q ss_pred h-----hhccccceeccCC-C-CCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGY-E-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~-~-~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+ .+++.......+. . .+....+.++++.+++.+ .+......||||+|++.|+++|+. +|+++|
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~-----~p~vll 173 (261)
T PRK14258 99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV-----KPKVLL 173 (261)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 2 2222111101111 1 112234556666665532 133344569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|+|+..+. .+.+.|..+.... +.+.|++|+
T Consensus 174 L-DEP~~~LD~~~~~-~l~~~l~~l~~~~---~~tiiivsH 209 (261)
T PRK14258 174 M-DEPCFGLDPIASM-KVESLIQSLRLRS---ELTMVIVSH 209 (261)
T ss_pred E-eCCCccCCHHHHH-HHHHHHHHHHHhC---CCEEEEEEC
Confidence 8 9999999998764 4447777665321 567777776
No 280
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.78 E-value=2.6e-19 Score=172.31 Aligned_cols=140 Identities=17% Similarity=0.203 Sum_probs=99.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++.|..|+|.+.+.++.+. . ..+.+.+++ ......-
T Consensus 16 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~---~--~~~~~~i~~--~~q~~~~ 86 (178)
T cd03247 16 QVLKNLSLELKQGE--KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL---E--KALSSLISV--LNQRPYL 86 (178)
T ss_pred cceEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH---H--HHHHhhEEE--EccCCee
Confidence 48999999999999 9999999999999999999999999999999998765321 0 011111111 1000000
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
.+..+ .+ .++...||||+|++.|+++|+. +|+++|| ||||+|||+..+ ..+.+.+..+..
T Consensus 87 ~~~tv-~~-----------~i~~~LS~G~~qrv~laral~~-----~p~~lll-DEP~~~LD~~~~-~~l~~~l~~~~~- 146 (178)
T cd03247 87 FDTTL-RN-----------NLGRRFSGGERQRLALARILLQ-----DAPIVLL-DEPTVGLDPITE-RQLLSLIFEVLK- 146 (178)
T ss_pred ecccH-HH-----------hhcccCCHHHHHHHHHHHHHhc-----CCCEEEE-ECCcccCCHHHH-HHHHHHHHHHcC-
Confidence 00011 11 1144569999999999999995 9999998 999999999876 455577766531
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
+.+.+++|+
T Consensus 147 ----~~tii~~sh 155 (178)
T cd03247 147 ----DKTLIWITH 155 (178)
T ss_pred ----CCEEEEEec
Confidence 456677665
No 281
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.78 E-value=2.5e-19 Score=198.23 Aligned_cols=161 Identities=20% Similarity=0.171 Sum_probs=116.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-CCcEEEEccccc----------CccchhhhhHhhhhcc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDT----------FRSGAVEQLRTHARRL 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-~~GkV~l~~~Dt----------~RigaveQL~~~~~~l 437 (589)
.+|++++|.+.+|+ +++|+||||||||||+++|+|++++ +.|+|.+.+.++ .++|++.|.......+
T Consensus 274 ~il~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 274 PILHNLSWQVNPGE--HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred eEEeeceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 48999999999999 9999999999999999999998765 689999988653 1378888754321110
Q ss_pred -----cc---ceec--cCC---CCCHHHHHHHHHHHhcccC-CCccc-cccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 438 -----QV---PIFE--KGY---EKDPAIVAKEAIQEATRNG-SDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 438 -----~v---~l~~--~~~---~~d~~~ia~~al~~a~l~~-~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
.+ .++. ..+ .......+.++++.+++.. +.... -..||||+||+.|+++|+. +|+++||
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~-----~p~lllL- 425 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVK-----HPTLLIL- 425 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 00 1110 001 1112345677888888765 43344 4559999999999999994 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|.+++..+ ..+.|++|+
T Consensus 426 DEPt~gLD~~~~~-~l~~~L~~l~~~~---~~tviivsH 460 (490)
T PRK10938 426 DEPLQGLDPLNRQ-LVRRFVDVLISEG---ETQLLFVSH 460 (490)
T ss_pred cCccccCCHHHHH-HHHHHHHHHHhcC---CcEEEEEec
Confidence 9999999999864 4457787776532 345667666
No 282
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.9e-19 Score=179.85 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=111.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH--hh---CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQ---HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll--~~---~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++ .| ++|+|.+.+.++. .+++++|...
T Consensus 19 ~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 19 KALNSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred eeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 48999999999999 99999999999999999999985 36 4899999987651 2777777643
Q ss_pred hh-----hccccceeccCCCC-C-HHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 HA-----RRLQVPIFEKGYEK-D-PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~~-----~~l~v~l~~~~~~~-d-~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+. +++.......+... . ....+.++++.+++.. .+..+...|||++|++.|+++|+. +|+++|
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lll 171 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT-----SPKIIL 171 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 22 22211110011111 1 1233445566554421 233445569999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 172 l-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sH 205 (252)
T PRK14239 172 L-DEPTSALDPISAG-KIEETLLGLKD-----DYTMLLVTR 205 (252)
T ss_pred E-cCCccccCHHHHH-HHHHHHHHHhh-----CCeEEEEEC
Confidence 8 9999999999865 44477776642 346677666
No 283
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.1e-19 Score=183.33 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=110.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|+++ |+.|+|.+.+.++. ++|+++|...
T Consensus 38 ~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 38 HALKNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 47899999999999 999999999999999999999987 58999999987652 2677777643
Q ss_pred h-----hhccccceeccCCCCC--HHHHHHHHHHHhcc----cC-CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATR----NG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~d--~~~ia~~al~~a~l----~~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+ .+++.+.......... ....+.++++.+++ .. .+..+...|||++|++.|+++|+. +|+++|
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~-----~p~lll 190 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI-----EPDVIL 190 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc-----CCCEEE
Confidence 2 2222211100111110 11223444444322 11 233444569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 191 L-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiiivsH 224 (271)
T PRK14238 191 M-DEPTSALDPISTL-KVEELVQELKK-----DYSIIIVTH 224 (271)
T ss_pred E-eCCCCcCCHHHHH-HHHHHHHHHHc-----CCEEEEEEc
Confidence 8 9999999999874 44477777643 346666665
No 284
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.9e-19 Score=169.28 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=116.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc--cchhhhhHhhhhcc--------
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--SGAVEQLRTHARRL-------- 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R--igaveQL~~~~~~l-------- 437 (589)
..++.+++|++..|+ ++.|.||||+||||||++|||++.|..|+|.+.++.+-. -.+.+-+-.++.+.
T Consensus 15 ~~lf~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 15 RTLFSDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred ceeecceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 357899999999999 999999999999999999999999999999999876532 11212222222222
Q ss_pred --ccceeccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 438 --QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 438 --~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
++.|+...++.-....+.+|++++++.++..+++.. |-|||+|++|||-+. ..+++.|| |||++++|....
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~l-----s~~pLWiL-DEP~taLDk~g~ 166 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWL-----SPAPLWIL-DEPFTALDKEGV 166 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHc-----CCCCceee-cCcccccCHHHH
Confidence 233444433332345567899999999998888877 999999999999887 47778777 999999999764
Q ss_pred HHHHHHHHHHhhcCC
Q 007789 515 LSKFNQKLADLSSSP 529 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~ 529 (589)
..|+..+...+..+
T Consensus 167 -a~l~~l~~~H~~~G 180 (209)
T COG4133 167 -ALLTALMAAHAAQG 180 (209)
T ss_pred -HHHHHHHHHHhcCC
Confidence 56767776655543
No 285
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.6e-19 Score=182.00 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=112.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|.+.+|+ +++|+|+||+|||||+++|+|++.+ ..|+|.+.+.++. ++++++|...
T Consensus 39 ~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 39 QALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred eEeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 47999999999999 9999999999999999999999873 7999999987753 2667776542
Q ss_pred h-----hhccccceeccCC-CC-CHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGY-EK-DPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~-~~-d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
. .+++.+.....+. .. .....+.++++.+++.. .+......|||++|++.|+++|+. +|+++|
T Consensus 117 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~-----~p~lll 191 (272)
T PRK14236 117 PFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI-----EPEVLL 191 (272)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC-----CCCEEE
Confidence 2 2222211100110 11 11233555666655431 233344559999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 192 L-DEPt~gLD~~~~~-~l~~~L~~~~~-----~~tiiivtH 225 (272)
T PRK14236 192 L-DEPTSALDPISTL-KIEELITELKS-----KYTIVIVTH 225 (272)
T ss_pred E-eCCcccCCHHHHH-HHHHHHHHHHh-----CCeEEEEeC
Confidence 8 9999999999764 55577777653 346677766
No 286
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=4.3e-19 Score=200.39 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=115.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++++|++++|+ .++|||++|+||||+++.|+|++ |+.|+|.++|.|+. ++++|+|...+ .
T Consensus 364 ~vL~~i~l~i~~G~--~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 364 TLAGPLNFTLPAGQ--RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 47999999999999 99999999999999999999999 99999999998863 38899997643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. +.. ...+. +...++++.+++ .+++..+-+ .||||+||++|||+|.+ +|+++||
T Consensus 441 eNI~--~g~--~~~~~-eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~-----~~~IliL- 509 (588)
T PRK11174 441 DNVL--LGN--PDASD-EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ-----PCQLLLL- 509 (588)
T ss_pred HHhh--cCC--CCCCH-HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 3332 211 11222 233445554433 245544432 49999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||++||+......+ +.|..+.. +.|.|++|+
T Consensus 510 DE~TSaLD~~te~~i~-~~l~~~~~-----~~TvIiItH 542 (588)
T PRK11174 510 DEPTASLDAHSEQLVM-QALNAASR-----RQTTLMVTH 542 (588)
T ss_pred eCCccCCCHHHHHHHH-HHHHHHhC-----CCEEEEEec
Confidence 9999999999875444 66665532 567788887
No 287
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.78 E-value=4.7e-19 Score=181.68 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=109.0
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---ccchhhhhHhhhhccccceecc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---RSGAVEQLRTHARRLQVPIFEK 444 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---RigaveQL~~~~~~l~v~l~~~ 444 (589)
..+|++++|.+.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+...+ ..+...++ +..+++.......
T Consensus 37 ~~il~~is~~i~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~-tv~enl~~~~~~~ 113 (264)
T PRK13546 37 FFALDDISLKAYEGD--VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQL-TGIENIEFKMLCM 113 (264)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCC-cHHHHHHHHHHHc
Confidence 468999999999999 99999999999999999999999999999998874211 11111111 2222222111111
Q ss_pred CCC-CCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHH
Q 007789 445 GYE-KDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 522 (589)
Q Consensus 445 ~~~-~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l 522 (589)
+.. ......+..+++.+++...-...+ ..||||+|++.|+++|+. +|+++|| ||||+|||+..+. .+.+.+
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~-----~p~iLlL-DEPt~gLD~~~~~-~l~~~L 186 (264)
T PRK13546 114 GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITV-----NPDILVI-DEALSVGDQTFAQ-KCLDKI 186 (264)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhh-----CCCEEEE-eCccccCCHHHHH-HHHHHH
Confidence 111 111122344555555544333334 459999999999999995 9999998 9999999998764 444677
Q ss_pred HHhhcCCCCCCccEEEEcc
Q 007789 523 ADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 523 ~~l~~~~~~~~it~IIlTK 541 (589)
.++... +.+.|++|+
T Consensus 187 ~~~~~~----g~tiIiisH 201 (264)
T PRK13546 187 YEFKEQ----NKTIFFVSH 201 (264)
T ss_pred HHHHHC----CCEEEEEcC
Confidence 666432 667778776
No 288
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.78 E-value=1.3e-18 Score=187.21 Aligned_cols=198 Identities=17% Similarity=0.166 Sum_probs=148.3
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhc
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARR 436 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~ 436 (589)
.+.++++|+|++.+|+ |.+|+|.||||||||+++|.|+++|+.|+|.+.|..+. .||+|.|...+.++
T Consensus 16 ~~~And~V~l~v~~Ge--IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~ 93 (501)
T COG3845 16 GVVANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93 (501)
T ss_pred CEEecCceeeeecCCc--EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccc
Confidence 4678899999999999 99999999999999999999999999999999998762 38999999877777
Q ss_pred cccc----eec---cCCCC---CHHHHHHHHHHHhccc-CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 437 LQVP----IFE---KGYEK---DPAIVAKEAIQEATRN-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 437 l~v~----l~~---~~~~~---d~~~ia~~al~~a~l~-~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+.+. +-. .+... .....+.++.+..++. +.+.+.-|.|=|+|||++|.++|.+ +|++++| |||
T Consensus 94 lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr-----~a~iLIL-DEP 167 (501)
T COG3845 94 LTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR-----GARLLIL-DEP 167 (501)
T ss_pred cchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc-----CCCEEEE-cCC
Confidence 6331 111 11111 2334555666666654 3456667889999999999999996 9999999 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEc-cccccccchhhhhHhHHHhCCCEEEEecCCCcc---cccCCCHH
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT-KFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT---DLKKLNVK 581 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlT-KlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~---DL~~~~~~ 581 (589)
|+-|-|....+.| +.++.+... |.++|++| |++++ ..+ .-.|..+-.|.-+. +....+.+
T Consensus 168 TaVLTP~E~~~lf-~~l~~l~~~----G~tIi~ITHKL~Ev-------~~i----aDrvTVLR~Gkvvgt~~~~~~~t~~ 231 (501)
T COG3845 168 TAVLTPQEADELF-EILRRLAAE----GKTIIFITHKLKEV-------MAI----ADRVTVLRRGKVVGTVDPVAETTEE 231 (501)
T ss_pred cccCCHHHHHHHH-HHHHHHHHC----CCEEEEEeccHHHH-------HHh----hCeeEEEeCCeEEeeecCCCCCCHH
Confidence 9999999877666 888888776 56666655 57775 222 22455555555442 25566788
Q ss_pred HHHHHhh
Q 007789 582 SIVKTLL 588 (589)
Q Consensus 582 ~~v~~Ll 588 (589)
.++++++
T Consensus 232 ela~lMv 238 (501)
T COG3845 232 ELAELMV 238 (501)
T ss_pred HHHHHhc
Confidence 8877654
No 289
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.78 E-value=4.6e-19 Score=173.96 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=101.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHh--HhhCCcEEEEcccccCc----------cchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTFR----------SGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl--l~~~~GkV~l~~~Dt~R----------igaveQL~~~~~~ 436 (589)
.+|++++|.+.+|+ +++|+|+||+|||||++.|+|+ +.|+.|+|.+.+.++.+ +++++|......
T Consensus 14 ~~l~~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~- 90 (200)
T cd03217 14 EILKGVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP- 90 (200)
T ss_pred EeeeccceEECCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhcc-
Confidence 48999999999999 9999999999999999999999 47899999999987643 333333221100
Q ss_pred cccceeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 437 LQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 437 l~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
. ..+.+.+ +...-..||||+|++.|+++|+. +|+++|| ||||+|||+..+.
T Consensus 91 ----------~----~~~~~~l--------~~~~~~LS~G~~qrv~laral~~-----~p~illl-DEPt~~LD~~~~~- 141 (200)
T cd03217 91 ----------G----VKNADFL--------RYVNEGFSGGEKKRNEILQLLLL-----EPDLAIL-DEPDSGLDIDALR- 141 (200)
T ss_pred ----------C----ccHHHHH--------hhccccCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCccCCHHHHH-
Confidence 0 0111111 11112569999999999999995 9999998 9999999998764
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.|.+.|.++.+. +.+.+++|+
T Consensus 142 ~l~~~L~~~~~~----~~tiii~sh 162 (200)
T cd03217 142 LVAEVINKLREE----GKSVLIITH 162 (200)
T ss_pred HHHHHHHHHHHC----CCEEEEEec
Confidence 555777777542 566677766
No 290
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.78 E-value=5.2e-19 Score=171.25 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=93.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
.++.++ +.+++|+ +++|+||||+|||||+++|+|+++|++|+|.+.+.+ ++++.|..
T Consensus 14 ~~l~~~-~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---i~~~~q~~----------------- 70 (177)
T cd03222 14 FLLVEL-GVVKEGE--VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PVYKPQYI----------------- 70 (177)
T ss_pred EEEccC-cEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---EEEEcccC-----------------
Confidence 466764 8899999 999999999999999999999999999999998753 33333311
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
..||||+|++.|+++|+. +|+++|| ||||+|+|+..+. .+.+.+..+...
T Consensus 71 -----------------------~LSgGq~qrv~laral~~-----~p~lllL-DEPts~LD~~~~~-~l~~~l~~~~~~ 120 (177)
T cd03222 71 -----------------------DLSGGELQRVAIAAALLR-----NATFYLF-DEPSAYLDIEQRL-NAARAIRRLSEE 120 (177)
T ss_pred -----------------------CCCHHHHHHHHHHHHHhc-----CCCEEEE-ECCcccCCHHHHH-HHHHHHHHHHHc
Confidence 089999999999999994 9999998 9999999999864 444667666543
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
. +.+.+++|+
T Consensus 121 ~---~~tiiivsH 130 (177)
T cd03222 121 G---KKTALVVEH 130 (177)
T ss_pred C---CCEEEEEEC
Confidence 1 366777776
No 291
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=4.6e-19 Score=180.48 Aligned_cols=177 Identities=14% Similarity=0.058 Sum_probs=117.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQV 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l~v 439 (589)
.+|++++|.+.+|+ +++|+|+||+|||||+++|+|+++|..|+|.+.+.++. ++++++|...+... .+
T Consensus 35 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv 111 (257)
T cd03288 35 PVLKHVKAYIKPGQ--KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SI 111 (257)
T ss_pred cceeEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HH
Confidence 48999999999999 99999999999999999999999999999999987652 26777776533211 11
Q ss_pred c-eeccCCCCCHHHHHHHHHHHhccc--------CCC----ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 440 P-IFEKGYEKDPAIVAKEAIQEATRN--------GSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 440 ~-l~~~~~~~d~~~ia~~al~~a~l~--------~~d----~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
. .......... ..+.+++..+++. +++ ......|||++|++.|+++|+. +|+++|| ||||
T Consensus 112 ~~nl~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-----~p~llll-DEPt 184 (257)
T cd03288 112 RFNLDPECKCTD-DRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR-----KSSILIM-DEAT 184 (257)
T ss_pred HHhcCcCCCCCH-HHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCc
Confidence 0 0000000111 1122232222111 122 1223459999999999999995 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
+|+|+..+. .|.+.+..+.. +.+.|++|+-... + .. .--|.++..|+-+
T Consensus 185 ~gLD~~~~~-~l~~~l~~~~~-----~~tiii~sh~~~~-------~---~~-~dri~~l~~G~i~ 233 (257)
T cd03288 185 ASIDMATEN-ILQKVVMTAFA-----DRTVVTIAHRVST-------I---LD-ADLVLVLSRGILV 233 (257)
T ss_pred cCCCHHHHH-HHHHHHHHhcC-----CCEEEEEecChHH-------H---Hh-CCEEEEEECCEEE
Confidence 999998764 44466655421 5677777763321 1 11 3456777777654
No 292
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.7e-19 Score=178.28 Aligned_cols=180 Identities=17% Similarity=0.193 Sum_probs=120.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh--h---CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~--~---~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++. | +.|+|.+.+.++. +++++.|...
T Consensus 19 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 19 EALKGIDLDFNQNE--ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 48999999999999 999999999999999999999865 4 4899999887652 3677777543
Q ss_pred h-----hhccccceeccCCCC-CH-HHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGYEK-DP-AIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~~~-d~-~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
. .+++...+...+... +. ...+.++++.+++. . .+..+-..||||+|++.|+++|+. +|+++|
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~-----~p~lll 171 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV-----KPDVIL 171 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 2 222221111111111 11 12334445555432 1 223334559999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
| ||||+|||+..+. .+.+.|..+.. ..+.|++|+--. ......-.|..+..|.-+
T Consensus 172 l-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tii~vsH~~~----------~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14255 172 L-DEPTSALDPISST-QIENMLLELRD-----QYTIILVTHSMH----------QASRISDKTAFFLTGNLI 226 (252)
T ss_pred E-cCCCccCCHHHHH-HHHHHHHHHHh-----CCEEEEEECCHH----------HHHHhCCEEEEEECCEEE
Confidence 8 9999999998864 44477776643 246677766211 112223466667666654
No 293
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.78 E-value=5.7e-19 Score=165.00 Aligned_cols=112 Identities=26% Similarity=0.269 Sum_probs=93.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
.+|++++|.+.+|+ +++|+|+||+||||++++|+|+++|+.|+|.+.+. .++++++|
T Consensus 14 ~~l~~~~~~~~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~------------------- 70 (144)
T cd03221 14 LLLKDISLTINPGD--RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ------------------- 70 (144)
T ss_pred eEEEeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc-------------------
Confidence 48899999999999 99999999999999999999999999999999773 23444444
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
.|+|++|++.|+++|+. +|++++| |||++|+|+..+. .+.+.+..+
T Consensus 71 ------------------------lS~G~~~rv~laral~~-----~p~illl-DEP~~~LD~~~~~-~l~~~l~~~--- 116 (144)
T cd03221 71 ------------------------LSGGEKMRLALAKLLLE-----NPNLLLL-DEPTNHLDLESIE-ALEEALKEY--- 116 (144)
T ss_pred ------------------------CCHHHHHHHHHHHHHhc-----CCCEEEE-eCCccCCCHHHHH-HHHHHHHHc---
Confidence 89999999999999995 9999998 9999999998864 333555543
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
..+.+++|+
T Consensus 117 ----~~til~~th 125 (144)
T cd03221 117 ----PGTVILVSH 125 (144)
T ss_pred ----CCEEEEEEC
Confidence 235666665
No 294
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=9.6e-19 Score=170.66 Aligned_cols=139 Identities=16% Similarity=0.149 Sum_probs=101.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH--hhCCcEEEEcccccC-----ccchhhhhHhhhhccccce
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF-----RSGAVEQLRTHARRLQVPI 441 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll--~~~~GkV~l~~~Dt~-----RigaveQL~~~~~~l~v~l 441 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++ .|+.|+|.+.+.++. +++++.|...+...
T Consensus 21 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~----- 93 (192)
T cd03232 21 QLLNNISGYVKPGT--LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPN----- 93 (192)
T ss_pred EeEEccEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccC-----
Confidence 58999999999999 99999999999999999999975 478999999987752 24444442211110
Q ss_pred eccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHH
Q 007789 442 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 521 (589)
Q Consensus 442 ~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 521 (589)
....+ .+..... .. ..|||++|++.|+++|+. +|+++|+ |||++|+|+..+. .+.+.
T Consensus 94 ------~tv~~----~l~~~~~--~~----~LSgGe~qrv~la~al~~-----~p~vlll-DEP~~~LD~~~~~-~l~~~ 150 (192)
T cd03232 94 ------LTVRE----ALRFSAL--LR----GLSVEQRKRLTIGVELAA-----KPSILFL-DEPTSGLDSQAAY-NIVRF 150 (192)
T ss_pred ------CcHHH----HHHHHHH--Hh----cCCHHHhHHHHHHHHHhc-----CCcEEEE-eCCCcCCCHHHHH-HHHHH
Confidence 01111 1111000 00 569999999999999995 9999988 9999999999875 44477
Q ss_pred HHHhhcCCCCCCccEEEEcc
Q 007789 522 LADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 522 l~~l~~~~~~~~it~IIlTK 541 (589)
+..+... +.+.+++|+
T Consensus 151 l~~~~~~----~~tiiivtH 166 (192)
T cd03232 151 LKKLADS----GQAILCTIH 166 (192)
T ss_pred HHHHHHc----CCEEEEEEc
Confidence 7776542 567777776
No 295
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.78 E-value=4.4e-19 Score=173.43 Aligned_cols=140 Identities=21% Similarity=0.209 Sum_probs=102.7
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH--hhCCcEEEEcccccCc------cchhhhhHhhhhcccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTFR------SGAVEQLRTHARRLQV 439 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll--~~~~GkV~l~~~Dt~R------igaveQL~~~~~~l~v 439 (589)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++ +|..|+|.+.+.++.. ++++.|...+
T Consensus 22 ~~~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~------ 93 (194)
T cd03213 22 KQLLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDIL------ 93 (194)
T ss_pred ccceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccC------
Confidence 358999999999999 99999999999999999999999 9999999999987632 3333332110
Q ss_pred ceeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHH
Q 007789 440 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 519 (589)
Q Consensus 440 ~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 519 (589)
+. .... .+.+..... . -..|||++|++.|+++|+. +|+++|| ||||+|||+..+. .+.
T Consensus 94 --~~---~~t~----~~~i~~~~~--~----~~LS~G~~qrv~laral~~-----~p~illl-DEP~~~LD~~~~~-~l~ 151 (194)
T cd03213 94 --HP---TLTV----RETLMFAAK--L----RGLSGGERKRVSIALELVS-----NPSLLFL-DEPTSGLDSSSAL-QVM 151 (194)
T ss_pred --CC---CCcH----HHHHHHHHH--h----ccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCCcCCCHHHHH-HHH
Confidence 00 0011 111111100 0 0669999999999999995 9999988 9999999998874 444
Q ss_pred HHHHHhhcCCCCCCccEEEEcc
Q 007789 520 QKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 520 ~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.|..+... +.+.|++|+
T Consensus 152 ~~l~~~~~~----~~tiii~sh 169 (194)
T cd03213 152 SLLRRLADT----GRTIICSIH 169 (194)
T ss_pred HHHHHHHhC----CCEEEEEec
Confidence 777766532 567777776
No 296
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.78 E-value=5.6e-19 Score=175.33 Aligned_cols=176 Identities=14% Similarity=0.026 Sum_probs=111.1
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEE-EcccccCccchhhhh---HhhhhccccceeccC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-MAACDTFRSGAVEQL---RTHARRLQVPIFEKG 445 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~-l~~~Dt~RigaveQL---~~~~~~l~v~l~~~~ 445 (589)
+|++|+|.+++|+ +++|+||||||||||+++|+|+++|+.|+|. +.+... .++...++ .+..+++.+. ...
T Consensus 2 vl~~vs~~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~~~~~~~l~~~ltv~enl~~~--~~~ 76 (213)
T PRK15177 2 VLDKTDFVMGYHE--HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-PLGANSFILPGLTGEENARMM--ASL 76 (213)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-ccccccccCCcCcHHHHHHHH--HHH
Confidence 6899999999999 9999999999999999999999999999997 655432 12211111 1122222221 111
Q ss_pred CCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 007789 446 YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 524 (589)
Q Consensus 446 ~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~ 524 (589)
++.+.......+....++... +..+-+.||||+|++.|+++|+. +|+++|| |||++++|+..+...+ +.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~-----~p~llll-DEP~~~lD~~~~~~~~-~~l~~ 149 (213)
T PRK15177 77 YGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLL-----PCRLYIA-DGKLYTGDNATQLRMQ-AALAC 149 (213)
T ss_pred cCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhc-----CCCEEEE-CCCCccCCHHHHHHHH-HHHHH
Confidence 223333333333333444433 33334559999999999999994 9999988 9999999998865433 44432
Q ss_pred hhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 525 LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 525 l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
... ..+.+++|+ |.. ......--|..+..|+-+
T Consensus 150 ~~~-----~~~ii~vsH-~~~---------~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 150 QLQ-----QKGLIVLTH-NPR---------LIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred Hhh-----CCcEEEEEC-CHH---------HHHHhcCeeEEEECCeEE
Confidence 221 123455554 321 122223356677777755
No 297
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.6e-19 Score=181.47 Aligned_cols=159 Identities=20% Similarity=0.210 Sum_probs=111.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC----------ccchhhhhHhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF----------RSGAVEQLRTH 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~----------RigaveQL~~~ 433 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|+++| ..|+|.+.+.++. ++++++|...+
T Consensus 35 ~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 35 TVLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred EEeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 47999999999999 9999999999999999999999985 6899999886642 36777775432
Q ss_pred -----hhccccceeccC-CCC-CHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 434 -----ARRLQVPIFEKG-YEK-DPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 434 -----~~~l~v~l~~~~-~~~-d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
.+++.+...... ... +....+.++++.+++.. .+..+...||||+|++.||++|+. +|+++||
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~-----~p~lllL 187 (276)
T PRK14271 113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV-----NPEVLLL 187 (276)
T ss_pred CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE
Confidence 222221111000 111 11123445566665542 122334559999999999999994 9999988
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|..+.. ..+.|++|+
T Consensus 188 -DEPt~~LD~~~~~-~l~~~L~~~~~-----~~tiiivsH 220 (276)
T PRK14271 188 -DEPTSALDPTTTE-KIEEFIRSLAD-----RLTVIIVTH 220 (276)
T ss_pred -cCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 9999999998864 44467776653 246677766
No 298
>PRK13409 putative ATPase RIL; Provisional
Probab=99.77 E-value=4.2e-19 Score=200.68 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=115.3
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccc----eeccC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP----IFEKG 445 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~----l~~~~ 445 (589)
.|+++++++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+. .+++++.|.......+.+. +....
T Consensus 354 ~l~~~s~~i~~Ge--iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----~~i~y~~Q~~~~~~~~tv~e~l~~~~~~ 427 (590)
T PRK13409 354 SLEVEGGEIYEGE--VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQYIKPDYDGTVEDLLRSITDD 427 (590)
T ss_pred EEEecceEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----eeEEEecccccCCCCCcHHHHHHHHhhh
Confidence 3788899999999 999999999999999999999999999999885 3688888864322222111 11111
Q ss_pred CCCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 007789 446 YEKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 524 (589)
Q Consensus 446 ~~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~ 524 (589)
+. ....+.++++.+++.......+. .||||+||+.||++|+. +|+++|| ||||+|||+..+. .+.+.|.+
T Consensus 428 ~~--~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~-----~p~llLL-DEPt~~LD~~~~~-~l~~~l~~ 498 (590)
T PRK13409 428 LG--SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR-----DADLYLL-DEPSAHLDVEQRL-AVAKAIRR 498 (590)
T ss_pred cC--hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCccCCCHHHHH-HHHHHHHH
Confidence 11 12345677888777654344454 49999999999999995 9999998 9999999999775 44477777
Q ss_pred hhcCCCCCCccEEEEcc
Q 007789 525 LSSSPNPQLIDGILLTK 541 (589)
Q Consensus 525 l~~~~~~~~it~IIlTK 541 (589)
++... +.+.+++|+
T Consensus 499 l~~~~---g~tviivsH 512 (590)
T PRK13409 499 IAEER---EATALVVDH 512 (590)
T ss_pred HHHhC---CCEEEEEeC
Confidence 76532 667788877
No 299
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.5e-19 Score=183.60 Aligned_cols=159 Identities=19% Similarity=0.239 Sum_probs=112.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++. |+.|+|.+.+.++. ++++++|...
T Consensus 59 ~iL~~is~~i~~Ge--~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 59 HALKGVSMDIPEKS--VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence 47899999999999 999999999999999999999986 58999999987653 2677777543
Q ss_pred h-----hhccccceecc----------CCCC---C-HHHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHH
Q 007789 433 H-----ARRLQVPIFEK----------GYEK---D-PAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALS 488 (589)
Q Consensus 433 ~-----~~~l~v~l~~~----------~~~~---d-~~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~ 488 (589)
+ .+++.+..... .+.. + ....+.++++.+++. . .+..+...||||+|++.|+++|+
T Consensus 137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~ 216 (305)
T PRK14264 137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216 (305)
T ss_pred cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence 2 22222111000 0011 1 123455566665542 1 23344556999999999999999
Q ss_pred hhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 489 KLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 489 kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
. +|+++|| ||||+|||+..+. .+.+.|..+.. ..+.|++|+
T Consensus 217 ~-----~p~lLLL-DEPtsgLD~~~~~-~l~~~L~~~~~-----~~tiiivtH 257 (305)
T PRK14264 217 V-----DPEVILM-DEPASALDPIATS-KIEDLIEELAE-----EYTVVVVTH 257 (305)
T ss_pred c-----CCCEEEE-eCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEEc
Confidence 4 9999998 9999999998874 44577777654 245666665
No 300
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.77 E-value=1.8e-18 Score=167.35 Aligned_cols=134 Identities=17% Similarity=0.141 Sum_probs=101.3
Q ss_pred cccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-C---ccchhhhhHhhhhccccce
Q 007789 366 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-F---RSGAVEQLRTHARRLQVPI 441 (589)
Q Consensus 366 ~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-~---RigaveQL~~~~~~l~v~l 441 (589)
..+.+|++++|++.+|+ +++|+|||||||||||+.|. +..|+|.+.+... + +++++.|
T Consensus 6 ~~~~~l~~isl~i~~G~--~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNV--LVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeeecceEEEEcCCC--EEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH------------
Confidence 34678999999999999 99999999999999999884 3688998865422 1 1222222
Q ss_pred eccCCCCCHHHHHHHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcC--CCEEEEEecCCCCCCHHHHHHH
Q 007789 442 FEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNN--PDLVLFVGEALVGNDAVDQLSK 517 (589)
Q Consensus 442 ~~~~~~~d~~~ia~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~--PdlILLVDEPt~GlD~~~q~~~ 517 (589)
.++++.+++.. .+..+...||||+|++.|+++|.. + |+++|| ||||+|+|+.... .
T Consensus 68 -------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~-----~~~p~llLl-DEPt~~LD~~~~~-~ 127 (176)
T cd03238 68 -------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFS-----EPPGTLFIL-DEPSTGLHQQDIN-Q 127 (176)
T ss_pred -------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhh-----CCCCCEEEE-eCCcccCCHHHHH-H
Confidence 34566666543 344445569999999999999995 8 999888 9999999998764 4
Q ss_pred HHHHHHHhhcCCCCCCccEEEEcc
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.+.+.++.+ .+.+.|++|+
T Consensus 128 l~~~l~~~~~----~g~tvIivSH 147 (176)
T cd03238 128 LLEVIKGLID----LGNTVILIEH 147 (176)
T ss_pred HHHHHHHHHh----CCCEEEEEeC
Confidence 4467776643 2677888887
No 301
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=8.9e-19 Score=185.07 Aligned_cols=159 Identities=21% Similarity=0.269 Sum_probs=114.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||||||||++.|+|++. |..|+|.+.|.++. ++++++|.+.
T Consensus 96 ~~L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 96 HVLHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 47999999999999 999999999999999999999885 46899999998863 3788888654
Q ss_pred hh-----hccccceeccCCCCCH--HHHHHHHHHHhccc-----CCCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 HA-----RRLQVPIFEKGYEKDP--AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~~-----~~l~v~l~~~~~~~d~--~~ia~~al~~a~l~-----~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+. +++.+.....++.... ...+..+++.+.+. ..+......|||++||+.|||+|.. +|+++|
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~-----~p~IlL 248 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL-----EPEVLL 248 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh-----CCCEEE
Confidence 32 2222111001111111 12245556655542 1234445569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|+|+.... .+.+.|..+.. +.+.|++|+
T Consensus 249 L-DEPts~LD~~~~~-~i~~~i~~l~~-----~~Tii~iTH 282 (329)
T PRK14257 249 M-DEPTSALDPIATA-KIEELILELKK-----KYSIIIVTH 282 (329)
T ss_pred E-eCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 8 9999999998764 47677776653 357777776
No 302
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.8e-18 Score=172.69 Aligned_cols=166 Identities=20% Similarity=0.216 Sum_probs=122.0
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhh-h-Hhhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQ-L-RTHAR 435 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQ-L-~~~~~ 435 (589)
-.+|++|++++++|+ -.+|+|||||||||||+.|++.+.|..|.|.+.|...- ++|+|.- + ..+..
T Consensus 44 k~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~ 121 (257)
T COG1119 44 KKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV 121 (257)
T ss_pred EeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc
Confidence 368999999999999 99999999999999999999999999999999886542 2444321 0 01111
Q ss_pred cc---c---------cceeccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 436 RL---Q---------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 436 ~l---~---------v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+. . +.+|...+.......+..+++.+++.......+.+ |-|+++++-|||||++ +|.++||
T Consensus 122 ~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~-----~P~LLiL- 195 (257)
T COG1119 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK-----DPELLIL- 195 (257)
T ss_pred ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc-----CCCEEEe-
Confidence 11 1 11111122223346677788888888777777776 9999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
|||+.|||...+. .+.+.|.+++.. .-..+.+++|+..+
T Consensus 196 DEP~~GLDl~~re-~ll~~l~~~~~~--~~~~~ll~VtHh~e 234 (257)
T COG1119 196 DEPAQGLDLIARE-QLLNRLEELAAS--PGAPALLFVTHHAE 234 (257)
T ss_pred cCccccCChHHHH-HHHHHHHHHhcC--CCCceEEEEEcchh
Confidence 9999999999864 444666666543 23567788888665
No 303
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=8.5e-19 Score=177.75 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=111.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh--h---CCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~--~---~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++. | +.|+|.+.+.++. +++++.|...
T Consensus 20 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 20 HALYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred eeeeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 48999999999999 999999999999999999999875 3 4799999987642 2567777543
Q ss_pred hh-----hccccceeccCC-C-CCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 HA-----RRLQVPIFEKGY-E-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~~-----~~l~v~l~~~~~-~-~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+. +++.+....... . ......+.++++.+++.. .+......|||++|++.|+++|+. +|+++|
T Consensus 98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~lll 172 (253)
T PRK14261 98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV-----NPEVIL 172 (253)
T ss_pred cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc-----CCCEEE
Confidence 22 221111100010 0 111233455566554421 234445569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. ..+.+++|+
T Consensus 173 L-DEP~~gLD~~~~~-~l~~~l~~~~~-----~~tvii~sh 206 (253)
T PRK14261 173 M-DEPCSALDPIATA-KIEDLIEDLKK-----EYTVIIVTH 206 (253)
T ss_pred E-eCCcccCCHHHHH-HHHHHHHHHhh-----CceEEEEEc
Confidence 8 9999999999874 44577776653 346677766
No 304
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.77 E-value=6.2e-19 Score=181.87 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=111.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA----- 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~----- 434 (589)
.+|++++|.+.+|+ +++|+|+||+|||||++.|+|++. ..|+|.|.+.++. ++++++|...+.
T Consensus 18 ~~l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~ 94 (275)
T cd03289 18 AVLENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFR 94 (275)
T ss_pred cceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHH
Confidence 48999999999999 999999999999999999999997 7899999998763 378888866432
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcccCCCccccc------------cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVD------------TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliD------------TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. .+ .......+.++++.+++..+-..+.+ .||||+|++.|+|+|+. +|+++||
T Consensus 95 ~nl~--~~----~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~-----~p~illl- 162 (275)
T cd03289 95 KNLD--PY----GKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS-----KAKILLL- 162 (275)
T ss_pred HHhh--hc----cCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 2221 11 11112334555666555432222222 69999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+++|+... ..+.+.|..+. .+.+.|++|+
T Consensus 163 DEpts~LD~~~~-~~l~~~l~~~~-----~~~tii~isH 195 (275)
T cd03289 163 DEPSAHLDPITY-QVIRKTLKQAF-----ADCTVILSEH 195 (275)
T ss_pred ECccccCCHHHH-HHHHHHHHHhc-----CCCEEEEEEC
Confidence 999999999876 45556666542 1566677766
No 305
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.1e-18 Score=178.00 Aligned_cols=159 Identities=19% Similarity=0.272 Sum_probs=112.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcc------cccC---------ccchhhhhHhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA------CDTF---------RSGAVEQLRTH 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~------~Dt~---------RigaveQL~~~ 433 (589)
.+|++++|.+.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.| .++. ++++++|...+
T Consensus 24 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 101 (257)
T PRK14246 24 AILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNP 101 (257)
T ss_pred eeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCcc
Confidence 58999999999999 9999999999999999999999999986665554 4431 36777776433
Q ss_pred hh------ccccceeccCCC-C-CHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 434 AR------RLQVPIFEKGYE-K-DPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 434 ~~------~l~v~l~~~~~~-~-d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
.. ++.+.....+.. . +....+.++++.+++.. .+..+.+.|||++|++.|+++|.. +|+++|
T Consensus 102 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~-----~P~lll 176 (257)
T PRK14246 102 FPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL-----KPKVLL 176 (257)
T ss_pred CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc-----CCCEEE
Confidence 22 222211111111 1 11234556677666532 234445569999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+ +.+.+.|..+.. +.+.|++|+
T Consensus 177 l-DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tiilvsh 210 (257)
T PRK14246 177 M-DEPTSMIDIVNS-QAIEKLITELKN-----EIAIVIVSH 210 (257)
T ss_pred E-cCCCccCCHHHH-HHHHHHHHHHhc-----CcEEEEEEC
Confidence 8 999999999976 455577766642 356677666
No 306
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1e-18 Score=176.68 Aligned_cols=159 Identities=18% Similarity=0.250 Sum_probs=111.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-----hCCcEEEEcccccC-----------ccchhhhhHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-----~~~GkV~l~~~Dt~-----------RigaveQL~~ 432 (589)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|++. |+.|+|.+.+.++. ++++++|...
T Consensus 17 ~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 17 HILKNVNLDIPKNS--VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 48999999999999 999999999999999999999874 37899999997652 2677776543
Q ss_pred h-----hhccccceeccCC-C-CCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 433 H-----ARRLQVPIFEKGY-E-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 433 ~-----~~~l~v~l~~~~~-~-~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+ .+++...+..... . ......+.++++.+++.. .+......|||++|++.|+++|+. +|+++|
T Consensus 95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~-----~p~lll 169 (250)
T PRK14266 95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV-----SPEVIL 169 (250)
T ss_pred cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc-----CCCEEE
Confidence 2 2222111100010 1 112234455566655421 133334559999999999999995 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+. .+.+.|..+.. +.+.+++|+
T Consensus 170 l-DEP~~gLD~~~~~-~l~~~l~~~~~-----~~tiii~sh 203 (250)
T PRK14266 170 M-DEPCSALDPISTT-KIEDLIHKLKE-----DYTIVIVTH 203 (250)
T ss_pred E-cCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEEC
Confidence 8 9999999998764 44477766642 456677766
No 307
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=178.05 Aligned_cols=159 Identities=18% Similarity=0.237 Sum_probs=111.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-----CCcEEEEcccccC-------------ccchhhhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-------------RSGAVEQL 430 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-----~~GkV~l~~~Dt~-------------RigaveQL 430 (589)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++.| +.|+|.+.+.+.. +++++.|.
T Consensus 30 ~vl~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 30 QALKNINMMVHEKQ--VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 48999999999999 9999999999999999999999875 6899999764421 26777775
Q ss_pred Hh-----hhhccccceeccCCCC--CHHHHHHHHHHHhccc----C-CCccccccCccccccHHHHHHHHhhhhhcCCCE
Q 007789 431 RT-----HARRLQVPIFEKGYEK--DPAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 498 (589)
Q Consensus 431 ~~-----~~~~l~v~l~~~~~~~--d~~~ia~~al~~a~l~----~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~Pdl 498 (589)
.. ..+++.+.+...+... ...+.+.++++.+++. . .+......|||++|++.|+++|.. +|++
T Consensus 108 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~-----~p~l 182 (265)
T PRK14252 108 PNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT-----DPEI 182 (265)
T ss_pred CcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc-----CCCE
Confidence 32 2232222111011111 1123445566655542 1 123344569999999999999995 9999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 499 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 499 ILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|| ||||+|||+..+. .|.+.|..+.. +.+.+++|+
T Consensus 183 lll-DEPt~gLD~~~~~-~l~~~l~~l~~-----~~tiiivth 218 (265)
T PRK14252 183 LLF-DEPTSALDPIATA-SIEELISDLKN-----KVTILIVTH 218 (265)
T ss_pred EEE-eCCCccCCHHHHH-HHHHHHHHHHh-----CCEEEEEec
Confidence 998 9999999998764 55577776643 356677665
No 308
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.77 E-value=9.6e-19 Score=200.25 Aligned_cols=160 Identities=22% Similarity=0.183 Sum_probs=118.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l-- 437 (589)
.+|+++++++++|+ .++|||+|||||||+++.|+|++.|+.|+|.++|.|.- .+|+|.|...+...-
T Consensus 487 ~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 487 PVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564 (709)
T ss_pred chhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence 58999999999999 99999999999999999999999999999999999872 388888866442221
Q ss_pred -ccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 438 -QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 438 -~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
++.+... ..+ .+.+.+|+..++. .+|+..+-+ .||||+||++|||+|.. +|.++|| ||
T Consensus 565 eNi~l~~p--~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~-----~P~ILlL-DE 635 (709)
T COG2274 565 ENIALGNP--EAT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS-----KPKILLL-DE 635 (709)
T ss_pred HHHhcCCC--CCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc-----CCCEEEE-eC
Confidence 2222111 111 1223334433322 245555543 39999999999999995 9999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
||++||+....... +.|..+.. +.|.|++|+=+.+
T Consensus 636 aTSaLD~~sE~~I~-~~L~~~~~-----~~T~I~IaHRl~t 670 (709)
T COG2274 636 ATSALDPETEAIIL-QNLLQILQ-----GRTVIIIAHRLST 670 (709)
T ss_pred cccccCHhHHHHHH-HHHHHHhc-----CCeEEEEEccchH
Confidence 99999999876555 55555443 5788998886654
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.77 E-value=1.5e-19 Score=223.87 Aligned_cols=160 Identities=18% Similarity=0.133 Sum_probs=122.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~-- 438 (589)
.+|++|+|.+.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+...+.
T Consensus 1953 ~aL~~ISf~I~~GE--i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1953 PAVDRLCVGVRPGE--CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred eEEEeeEEEEcCCc--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHH
Confidence 48999999999999 99999999999999999999999999999999998762 3788888654433331
Q ss_pred --cceeccCCCC---CHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 439 --VPIFEKGYEK---DPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 439 --v~l~~~~~~~---d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
+.++...++. +....+.++++.+++..+....+.+ ||||+||+.+|+||+. +|+++|| ||||+|+|+.
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~-----~P~VLLL-DEPTsGLDp~ 2104 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG-----CPPLVLL-DEPTTGMDPQ 2104 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-ECCCCCCCHH
Confidence 1122221221 1234556778888876655555555 9999999999999994 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+. .+.+.|..+... +.++|++|+
T Consensus 2105 sr~-~l~~lL~~l~~~----g~TIILtTH 2128 (2272)
T TIGR01257 2105 ARR-MLWNTIVSIIRE----GRAVVLTSH 2128 (2272)
T ss_pred HHH-HHHHHHHHHHhC----CCEEEEEeC
Confidence 874 555777777543 556666666
No 310
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.77 E-value=1.1e-18 Score=196.73 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=124.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh-----hh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-----HA 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~-----~~ 434 (589)
.+|+++++++++|+ .++|+|+||+||||+++.|+|++.|++|+|.++|.|+- ++++++|... +.
T Consensus 357 ~il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 357 PALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434 (582)
T ss_pred ccccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence 48999999999999 99999999999999999999999999999999998762 4889998753 34
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.+.. ....++ +...++++.+++ .+++..+-+ .|||++||+.|||+|.+ +|++++|
T Consensus 435 ~Ni~~~~---~~~~~~-~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~-----~~~ilil- 504 (582)
T PRK11176 435 NNIAYAR---TEQYSR-EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR-----DSPILIL- 504 (582)
T ss_pred HHHhcCC---CCCCCH-HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh-----CCCEEEE-
Confidence 4432211 011122 233445554432 234443322 49999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||||++||+......+ +.+..+.. +.+.|++|+--. ... .---|..+..|+-+
T Consensus 505 DEptsaLD~~t~~~i~-~~l~~~~~-----~~tvI~VtHr~~----------~~~-~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 505 DEATSALDTESERAIQ-AALDELQK-----NRTSLVIAHRLS----------TIE-KADEILVVEDGEIV 557 (582)
T ss_pred ECccccCCHHHHHHHH-HHHHHHhC-----CCEEEEEecchH----------HHH-hCCEEEEEECCEEE
Confidence 9999999999875444 66655532 567888887221 111 12346677777655
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.3e-19 Score=196.01 Aligned_cols=155 Identities=17% Similarity=0.109 Sum_probs=110.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhh------hccccce-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA------RRLQVPI- 441 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~------~~l~v~l- 441 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+. .++|++.|..... +++..+.
T Consensus 15 ~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~~~~q~~~~~~~~tv~e~l~~~~~ 90 (530)
T PRK15064 15 PLFENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--ERLGKLRQDQFAFEEFTVLDTVIMGHT 90 (530)
T ss_pred EeEeCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCcCCCCcHHHHHHHhhH
Confidence 48999999999999 99999999999999999999999999999998763 3577777743221 1111100
Q ss_pred --e------------------------------ccCCCCCHHHHHHHHHHHhcccCC-Cccccc-cCccccccHHHHHHH
Q 007789 442 --F------------------------------EKGYEKDPAIVAKEAIQEATRNGS-DVVLVD-TAGRMQDNEPLMRAL 487 (589)
Q Consensus 442 --~------------------------------~~~~~~d~~~ia~~al~~a~l~~~-d~vliD-TSGg~qqr~~LaraL 487 (589)
+ ....+.+....+.++++.+++... ....+. .||||+||+.||++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL 170 (530)
T PRK15064 91 ELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQAL 170 (530)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHH
Confidence 0 000011122345667777777542 223444 499999999999999
Q ss_pred HhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 488 SKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 488 ~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. +|+++|| ||||+|||+..+. .+.+.|. + .+.++|++|+
T Consensus 171 ~~-----~p~lLlL-DEPt~~LD~~~~~-~l~~~l~---~----~~~tiiivsH 210 (530)
T PRK15064 171 FS-----NPDILLL-DEPTNNLDINTIR-WLEDVLN---E----RNSTMIIISH 210 (530)
T ss_pred hc-----CCCEEEE-cCCCcccCHHHHH-HHHHHHH---h----CCCeEEEEeC
Confidence 94 9999998 9999999999874 3334443 1 2567777776
No 312
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.76 E-value=1.5e-18 Score=177.24 Aligned_cols=159 Identities=17% Similarity=0.098 Sum_probs=108.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEE-----------EcccccCc-----------cch
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTFR-----------SGA 426 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~-----------l~~~Dt~R-----------iga 426 (589)
.+|+++++ +.+|+ +++|+||||+|||||++.|+|+++|+.|+|. +.+.++.+ +++
T Consensus 15 ~~l~~i~~-i~~Ge--~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLPV-PREGQ--VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCCC-CCCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 47899984 89999 9999999999999999999999999999996 55655421 122
Q ss_pred hhhhHhhhhcc-ccceeccCCCCCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 427 VEQLRTHARRL-QVPIFEKGYEKDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 427 veQL~~~~~~l-~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
+.|........ .-.+............+.++++.+++..+.. .....|||++|++.|+++|+. +|+++|| ||
T Consensus 92 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~-----~p~illl-DE 165 (255)
T cd03236 92 KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR-----DADFYFF-DE 165 (255)
T ss_pred ecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh-----CCCEEEE-EC
Confidence 22221111000 0000000011223355667788777755433 334459999999999999995 9999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+|+|+..+. .|.+.+.++... +.+.|++|+
T Consensus 166 Pts~LD~~~~~-~l~~~l~~l~~~----~~tIIiiSH 197 (255)
T cd03236 166 PSSYLDIKQRL-NAARLIRELAED----DNYVLVVEH 197 (255)
T ss_pred CCCCCCHHHHH-HHHHHHHHHHhc----CCEEEEEEC
Confidence 99999998764 444777777543 456666665
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.76 E-value=1.7e-18 Score=179.17 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=113.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhh-----ccccceec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR-----RLQVPIFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~-----~l~v~l~~ 443 (589)
.+|++++|.+.+|+ +++|+|+||+|||||+++|+|+++|..|+|.+.+ ++++++|...+.. ++....
T Consensus 51 ~vL~~vs~~i~~Ge--~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----~i~yv~q~~~l~~~tv~enl~~~~-- 122 (282)
T cd03291 51 PVLKNINLKIEKGE--MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----RISFSSQFSWIMPGTIKENIIFGV-- 122 (282)
T ss_pred cceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----EEEEEeCcccccccCHHHHhhccc--
Confidence 47899999999999 9999999999999999999999999999999876 5788888654322 221110
Q ss_pred cCCCCCHHHHHHHHHHHhcccC--------C----CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 444 KGYEKDPAIVAKEAIQEATRNG--------S----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~a~l~~--------~----d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
.+ .. ..+.+++..+++.. . +......|||++|++.|+++|+. +|+++|| ||||+|||+
T Consensus 123 -~~--~~-~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~-----~p~iLiL-DEPt~gLD~ 192 (282)
T cd03291 123 -SY--DE-YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK-----DADLYLL-DSPFGYLDV 192 (282)
T ss_pred -cc--CH-HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-ECCCccCCH
Confidence 01 11 11122222222110 0 11123559999999999999995 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
..+...+...+..+.. +.+.+++|+ |... +.. .-.|.++..|+-+
T Consensus 193 ~~~~~l~~~ll~~~~~-----~~tIiiisH-~~~~------~~~----~d~i~~l~~G~i~ 237 (282)
T cd03291 193 FTEKEIFESCVCKLMA-----NKTRILVTS-KMEH------LKK----ADKILILHEGSSY 237 (282)
T ss_pred HHHHHHHHHHHHHhhC-----CCEEEEEeC-ChHH------HHh----CCEEEEEECCEEE
Confidence 8764333223333331 456677776 3210 111 2357777777643
No 314
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.6e-18 Score=193.73 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=113.9
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc-
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l- 437 (589)
+.+|+|++|++++|+ ++++|||+|+||||.++.|-.+|.|++|+|+++|.|+- .+|.|.|.+++...-
T Consensus 481 ~~Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI 558 (716)
T KOG0058|consen 481 VPVLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSI 558 (716)
T ss_pred chhhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccH
Confidence 359999999999999 99999999999999999999999999999999999982 389999987543221
Q ss_pred --ccceeccCCCCCHHHHHHHHHHHhcc--------cCCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 438 --QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 438 --~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
+|.+-.. ..+. +.+..+.+.++. .+|+-..- ..||||+||++|||||.+ +|.++|| |
T Consensus 559 ~eNI~YG~~--~~t~-e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr-----~P~VLIL-D 629 (716)
T KOG0058|consen 559 RENIAYGLD--NATD-EEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR-----NPRVLIL-D 629 (716)
T ss_pred HHHHhcCCC--CCCH-HHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc-----CCCEEEE-e
Confidence 2211111 1112 222333333221 24554432 239999999999999997 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+|+.||+... ...+++|..+.. +-|+++|.+
T Consensus 630 EATSALDaeSE-~lVq~aL~~~~~-----~rTVlvIAH 661 (716)
T KOG0058|consen 630 EATSALDAESE-YLVQEALDRLMQ-----GRTVLVIAH 661 (716)
T ss_pred chhhhcchhhH-HHHHHHHHHhhc-----CCeEEEEeh
Confidence 99999999875 344566665544 355565544
No 315
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=1.7e-18 Score=202.77 Aligned_cols=177 Identities=24% Similarity=0.325 Sum_probs=129.3
Q ss_pred cccc-cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh
Q 007789 364 PRRS-IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH 433 (589)
Q Consensus 364 p~~~-i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~ 433 (589)
|.+. +.+|++++|.+++|+ .++|||++||||||++..|.+++.|+.|+|+|.|.|+. ++|.|.|.+.+
T Consensus 361 PsRpdv~Il~g~sl~i~~G~--~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl 438 (1228)
T KOG0055|consen 361 PSRPDVKILKGVSLKIPSGQ--TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL 438 (1228)
T ss_pred CCCCcchhhCCeEEEeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh
Confidence 4443 689999999999999 99999999999999999999999999999999999983 48999998744
Q ss_pred -----hhccccceeccCCCCCH--HHHHHHHHHHhcc--------cCCCccccc----cCccccccHHHHHHHHhhhhhc
Q 007789 434 -----ARRLQVPIFEKGYEKDP--AIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLN 494 (589)
Q Consensus 434 -----~~~l~v~l~~~~~~~d~--~~ia~~al~~a~l--------~~~d~vliD----TSGg~qqr~~LaraL~kl~~~~ 494 (589)
.+++. |+++. .+...++.+.++. .+++....+ .||||+||++|||+|.+
T Consensus 439 F~~tI~eNI~-------~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~----- 506 (1228)
T KOG0055|consen 439 FATTIRENIR-------YGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVR----- 506 (1228)
T ss_pred hcccHHHHHh-------cCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHh-----
Confidence 33322 23211 1223333333221 234444433 49999999999999997
Q ss_pred CCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 495 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 495 ~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
+|+++|| ||||++||+.+. +..+++|...+. +-|.||+++ +-++ ..---|.++-.|+-++
T Consensus 507 ~P~ILLL-DEaTSaLD~~se-~~Vq~ALd~~~~-----grTTivVaHRLStI------------rnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 507 NPKILLL-DEATSALDAESE-RVVQEALDKASK-----GRTTIVVAHRLSTI------------RNADKIAVMEEGKIVE 567 (1228)
T ss_pred CCCEEEe-cCcccccCHHHH-HHHHHHHHHhhc-----CCeEEEEeeehhhh------------hccCEEEEEECCEEEE
Confidence 9999998 999999999976 455577765543 446777766 2222 1133578888888764
No 316
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.76 E-value=1.3e-18 Score=194.01 Aligned_cols=154 Identities=22% Similarity=0.232 Sum_probs=115.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ .++|+|+||+||||+++.|+|+++|++|+|.+.+.|+. +++++.|...+ .
T Consensus 336 ~il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 336 PALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413 (529)
T ss_pred ccccceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence 37999999999999 99999999999999999999999999999999998762 37888887643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.+. .. ..+ .+...++++.+++. ++|..+ ...|||++||+.|||+|.+ +|++++|
T Consensus 414 ~Ni~~~--~~--~~~-~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~-----~~~ilil- 482 (529)
T TIGR02857 414 ENIRLA--RP--DAS-DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR-----DAPLLLL- 482 (529)
T ss_pred HHHhcc--CC--CCC-HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 333221 11 111 23344555555432 344433 2349999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+++|+......+ +.+..+. .+.+.|++|+
T Consensus 483 DE~ts~lD~~~~~~i~-~~l~~~~-----~~~t~i~itH 515 (529)
T TIGR02857 483 DEPTAHLDAETEALVT-EALRALA-----QGRTVLLVTH 515 (529)
T ss_pred eCcccccCHHHHHHHH-HHHHHhc-----CCCEEEEEec
Confidence 9999999999875444 5665543 2578888887
No 317
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.76 E-value=1.4e-18 Score=200.38 Aligned_cols=172 Identities=17% Similarity=0.178 Sum_probs=123.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ .++|||+|||||||+++.|+|++.|++|+|.++|.|+. ++|+++|...+ .
T Consensus 493 ~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~ 570 (710)
T TIGR03796 493 PLIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570 (710)
T ss_pred CcccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH
Confidence 48999999999999 99999999999999999999999999999999998862 38899997643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. +.. ...+. +...++++.+++. +++..+-+ .||||+||++|||+|.+ +|+++||
T Consensus 571 eNi~--l~~--~~~~~-~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~-----~p~iliL- 639 (710)
T TIGR03796 571 DNLT--LWD--PTIPD-ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR-----NPSILIL- 639 (710)
T ss_pred HHhh--CCC--CCCCH-HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh-----CCCEEEE-
Confidence 3332 221 11222 3334455554332 34444432 49999999999999996 9999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||||++||+....+.+ +.+.. .+.|.|++|+=-.+ ... ---|..+..|+-+
T Consensus 640 DEptS~LD~~te~~i~-~~l~~-------~~~T~IiitHrl~~----------i~~-~D~Iivl~~G~i~ 690 (710)
T TIGR03796 640 DEATSALDPETEKIID-DNLRR-------RGCTCIIVAHRLST----------IRD-CDEIIVLERGKVV 690 (710)
T ss_pred ECccccCCHHHHHHHH-HHHHh-------cCCEEEEEecCHHH----------HHh-CCEEEEEeCCEEE
Confidence 9999999998765443 44432 26788888873221 111 2246667777665
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1e-18 Score=195.22 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=122.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHh--hhhcccc----cee
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT--HARRLQV----PIF 442 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~--~~~~l~v----~l~ 442 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+. .++|++.|... +...+.+ .++
T Consensus 333 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~~~q~~~~~~~~~~t~~~~~~~~ 408 (530)
T PRK15064 333 PLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--ANIGYYAQDHAYDFENDLTLFDWMSQW 408 (530)
T ss_pred eeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEcccccccCCCCCcHHHHHHHh
Confidence 47999999999999 99999999999999999999999999999998764 36888888642 2221211 111
Q ss_pred ccCCCCCHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHH
Q 007789 443 EKGYEKDPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 520 (589)
Q Consensus 443 ~~~~~~d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~ 520 (589)
. . .......+.++++.+++. .. +..+-..||||+||+.|+++|+. +|+++|| ||||+|||+..+. .+.+
T Consensus 409 ~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~-----~p~lllL-DEPt~~LD~~~~~-~l~~ 479 (530)
T PRK15064 409 R-Q-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ-----KPNVLVM-DEPTNHMDMESIE-SLNM 479 (530)
T ss_pred c-c-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhc-----CCCEEEE-cCCCCCCCHHHHH-HHHH
Confidence 1 1 112234566778877763 23 33444559999999999999994 9999998 9999999999864 3335
Q ss_pred HHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 521 KLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 521 ~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
.|..+ +.+.|++|+ |.- .+....--|.++..|+-+
T Consensus 480 ~l~~~-------~~tvi~vsH-d~~---------~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 480 ALEKY-------EGTLIFVSH-DRE---------FVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHC-------CCEEEEEeC-CHH---------HHHHhCCEEEEEECCeEE
Confidence 55433 236677776 321 112223466777777653
No 319
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=1.1e-18 Score=196.25 Aligned_cols=156 Identities=21% Similarity=0.152 Sum_probs=111.2
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhh------hccccce
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA------RRLQVPI 441 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~------~~l~v~l 441 (589)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+... .++|+++|...+. +++...+
T Consensus 20 ~~il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~~~~~tv~e~l~~~~ 95 (556)
T PRK11819 20 KQILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--IKVGYLPQEPQLDPEKTVRENVEEGV 95 (556)
T ss_pred CeeeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCCCCCCcHHHHHHHhh
Confidence 348999999999999 99999999999999999999999999999998642 4688888864332 2221111
Q ss_pred ec---------c-----CCC-----------------------CCHHHHHHHHHHHhcccCCCccccccCccccccHHHH
Q 007789 442 FE---------K-----GYE-----------------------KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM 484 (589)
Q Consensus 442 ~~---------~-----~~~-----------------------~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~La 484 (589)
.. . ... .+....+..+++.+++...+..+-+.||||+||+.|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la 175 (556)
T PRK11819 96 AEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALC 175 (556)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHH
Confidence 00 0 000 0112334556666666433444445599999999999
Q ss_pred HHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 485 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 485 raL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
++|.. +|+++|| ||||+|||+..+. .+.+.|..+ ..+.|++|+
T Consensus 176 ~al~~-----~p~vlLL-DEPt~~LD~~~~~-~l~~~L~~~-------~~tviiisH 218 (556)
T PRK11819 176 RLLLE-----KPDMLLL-DEPTNHLDAESVA-WLEQFLHDY-------PGTVVAVTH 218 (556)
T ss_pred HHHhC-----CCCEEEE-cCCCCcCChHHHH-HHHHHHHhC-------CCeEEEEeC
Confidence 99994 9999998 9999999999874 333555443 136667666
No 320
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.76 E-value=1.8e-18 Score=198.95 Aligned_cols=151 Identities=26% Similarity=0.222 Sum_probs=114.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ .++|||+|||||||+++.|+|++.|++|+|.++|.|+. ++|+++|...+ .
T Consensus 467 ~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 544 (686)
T TIGR03797 467 LILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIF 544 (686)
T ss_pred cceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHH
Confidence 48999999999999 99999999999999999999999999999999998873 38899987644 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.+ ... .+. +.+.++++.+++. +++..+- ..||||+||++|||+|.+ +|++++|
T Consensus 545 eNi~~--~~~---~~~-e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~-----~p~iLiL- 612 (686)
T TIGR03797 545 ENIAG--GAP---LTL-DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR-----KPRILLF- 612 (686)
T ss_pred HHHhc--CCC---CCH-HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 33322 111 222 3344555555432 3444432 249999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||++||+....+.+ +.+..+ +.|.|++|+
T Consensus 613 DEpTS~LD~~te~~i~-~~L~~~-------~~T~IiItH 643 (686)
T TIGR03797 613 DEATSALDNRTQAIVS-ESLERL-------KVTRIVIAH 643 (686)
T ss_pred eCCccCCCHHHHHHHH-HHHHHh-------CCeEEEEec
Confidence 9999999998865433 555443 347788887
No 321
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.76 E-value=6.9e-19 Score=161.05 Aligned_cols=123 Identities=27% Similarity=0.243 Sum_probs=95.6
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc---------cchhhhhHhhhhccccce
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLRTHARRLQVPI 441 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R---------igaveQL~~~~~~l~v~l 441 (589)
|+++++.+.+|+ +++|+|+||+||||+++.|+|.+.+..|.|.+.+.++.. +++++|...+...+.+.-
T Consensus 1 L~~v~~~i~~g~--~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGE--IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTS--EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCC--EEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 678999999999 999999999999999999999999999999999988743 455555544333332211
Q ss_pred eccCCCCCHHHHHHHHHHHhcccCCCccc-----cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 442 FEKGYEKDPAIVAKEAIQEATRNGSDVVL-----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 442 ~~~~~~~d~~~ia~~al~~a~l~~~d~vl-----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
. .....+.++++.+++..+.... -..|||++|++.|+++|.+ +|+++|| ||||+
T Consensus 79 ~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~-----~~~llll-DEPt~ 137 (137)
T PF00005_consen 79 N------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLK-----NPKLLLL-DEPTN 137 (137)
T ss_dssp H------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT-----TSSEEEE-ESTTT
T ss_pred c------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHc-----CCCEEEE-eCCCC
Confidence 0 2334567778877776643333 4459999999999999995 9999998 99985
No 322
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1e-18 Score=199.40 Aligned_cols=155 Identities=21% Similarity=0.098 Sum_probs=106.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhh---------------hHhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ---------------LRTH 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQ---------------L~~~ 433 (589)
.+|++|+|.+.+|+ +++|||||||||||||++|+|.+.|+.|+|.+.+.. +++++.| ....
T Consensus 15 ~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~--~i~~~~q~~~~~~~~~~~~v~~~~~~ 90 (638)
T PRK10636 15 VLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW--QLAWVNQETPALPQPALEYVIDGDRE 90 (638)
T ss_pred eeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--EEEEEecCCCCCCCCHHHHHHHhhHH
Confidence 48999999999999 999999999999999999999999999999987642 2333333 1111
Q ss_pred hhcccc-----------cee----c---cCCCCCHHHHHHHHHHHhccc-C-CCccccccCccccccHHHHHHHHhhhhh
Q 007789 434 ARRLQV-----------PIF----E---KGYEKDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYL 493 (589)
Q Consensus 434 ~~~l~v-----------~l~----~---~~~~~d~~~ia~~al~~a~l~-~-~d~vliDTSGg~qqr~~LaraL~kl~~~ 493 (589)
...+.. ..+ . ...+.+....+..+++.+++. . .+..+-..|||+++|+.||++|+.
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~---- 166 (638)
T PRK10636 91 YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALIC---- 166 (638)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHcc----
Confidence 100000 000 0 000112334567778888774 2 233334449999999999999994
Q ss_pred cCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 494 NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 494 ~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|+++|| ||||++||+..+. .+.+.|..+ +.++|++|+
T Consensus 167 -~P~lLLL-DEPtn~LD~~~~~-~L~~~L~~~-------~~tviivsH 204 (638)
T PRK10636 167 -RSDLLLL-DEPTNHLDLDAVI-WLEKWLKSY-------QGTLILISH 204 (638)
T ss_pred -CCCEEEE-cCCCCcCCHHHHH-HHHHHHHhC-------CCeEEEEeC
Confidence 9999998 9999999998764 333444332 346677766
No 323
>PLN03211 ABC transporter G-25; Provisional
Probab=99.76 E-value=2.2e-18 Score=197.16 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=118.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC--CcEEEEccccc-----CccchhhhhHhhhhccccc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDT-----FRSGAVEQLRTHARRLQVP- 440 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~--~GkV~l~~~Dt-----~RigaveQL~~~~~~l~v~- 440 (589)
.+|+++++.+++|+ +++|+||||+|||||++.|+|.++|. .|+|.++|.+. .++|++.|...+...+.+.
T Consensus 82 ~iL~~vs~~i~~Ge--~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 82 TILNGVTGMASPGE--ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred eeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 58999999999999 99999999999999999999999885 89999999875 2489999876544333211
Q ss_pred ---eec--cCC-CCC---HHHHHHHHHHHhcccCCCc------cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 441 ---IFE--KGY-EKD---PAIVAKEAIQEATRNGSDV------VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 441 ---l~~--~~~-~~d---~~~ia~~al~~a~l~~~d~------vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+.. +.. ... ....+.++++.+++.+... ..-..||||+||+.|+++|.. +|++++| |||
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~-----~P~iLlL-DEP 233 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI-----NPSLLIL-DEP 233 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh-----CCCEEEE-eCC
Confidence 111 101 111 2244667788777765422 122359999999999999995 9999888 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+|||+..+. .+.+.|..+++. +.+.|++|+
T Consensus 234 tsgLD~~~~~-~l~~~L~~l~~~----g~TvI~~sH 264 (659)
T PLN03211 234 TSGLDATAAY-RLVLTLGSLAQK----GKTIVTSMH 264 (659)
T ss_pred CCCcCHHHHH-HHHHHHHHHHhC----CCEEEEEec
Confidence 9999999875 444777777653 556666666
No 324
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.75 E-value=2.7e-18 Score=197.70 Aligned_cols=187 Identities=19% Similarity=0.183 Sum_probs=130.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ .++|||+||+||||+++.|+|++.|++|+|.++|.|+. .++++.|...+ .
T Consensus 479 ~vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 479 PALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556 (694)
T ss_pred cceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence 37999999999999 99999999999999999999999999999999998862 38889887643 4
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.+ ... ..+. +.+.++++.+++. +++..+- ..||||+||++|||+|.+ +|++++|
T Consensus 557 eNi~~--~~~--~~~~-~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~-----~p~iliL- 625 (694)
T TIGR03375 557 DNIAL--GAP--YADD-EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR-----DPPILLL- 625 (694)
T ss_pred HHHhC--CCC--CCCH-HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 44322 111 1222 2334455544332 3444432 349999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHH
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKS 582 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~ 582 (589)
||||++||+..... +.+.+..+.. +.|.|++|+=-.+ .. .---|..+..|+-++ .=+.+.
T Consensus 626 DE~Ts~LD~~te~~-i~~~l~~~~~-----~~T~iiItHrl~~----------~~-~~D~iivl~~G~i~e---~G~~~e 685 (694)
T TIGR03375 626 DEPTSAMDNRSEER-FKDRLKRWLA-----GKTLVLVTHRTSL----------LD-LVDRIIVMDNGRIVA---DGPKDQ 685 (694)
T ss_pred eCCCCCCCHHHHHH-HHHHHHHHhC-----CCEEEEEecCHHH----------HH-hCCEEEEEeCCEEEe---eCCHHH
Confidence 99999999987644 4466665542 5677888872211 11 123567777777653 223455
Q ss_pred HHHHhh
Q 007789 583 IVKTLL 588 (589)
Q Consensus 583 ~v~~Ll 588 (589)
+...++
T Consensus 686 Ll~~~~ 691 (694)
T TIGR03375 686 VLEALR 691 (694)
T ss_pred HHHHhh
Confidence 555443
No 325
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.75 E-value=2.3e-18 Score=193.46 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=110.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHh-hhhcc------ccce
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-HARRL------QVPI 441 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~-~~~~l------~v~l 441 (589)
.+|++++|.+.+|+ +++|+||||||||||+++|+|+++|+.|+|.+ +.+ .++|++.|... +...+ ....
T Consensus 336 ~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~-~~i~~v~q~~~~~~~~~tv~e~l~~~~ 411 (552)
T TIGR03719 336 LLIDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GET-VKLAYVDQSRDALDPNKTVWEEISGGL 411 (552)
T ss_pred eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCc-eEEEEEeCCccccCCCCcHHHHHHhhc
Confidence 48999999999999 99999999999999999999999999999998 333 37899998642 22222 1111
Q ss_pred eccCCCCCHHHHHHHHHHHhcccC-C-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHH
Q 007789 442 FEKGYEKDPAIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 519 (589)
Q Consensus 442 ~~~~~~~d~~~ia~~al~~a~l~~-~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 519 (589)
........ ...+.++++.+++.. . +..+-..||||+||+.|+++|+. +|+++|| ||||+|||+..+. .+.
T Consensus 412 ~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~-----~p~lllL-DEPt~~LD~~~~~-~l~ 483 (552)
T TIGR03719 412 DIIQLGKR-EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS-----GGNVLLL-DEPTNDLDVETLR-ALE 483 (552)
T ss_pred cccccCcc-hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh-----CCCEEEE-eCCCCCCCHHHHH-HHH
Confidence 00011111 223456777777753 2 33344459999999999999994 9999998 9999999999864 333
Q ss_pred HHHHHhhcCCCCCCccEEEEcc
Q 007789 520 QKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 520 ~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.|..+. + +.|++|+
T Consensus 484 ~~l~~~~------~-~viivsH 498 (552)
T TIGR03719 484 EALLEFA------G-CAVVISH 498 (552)
T ss_pred HHHHHCC------C-eEEEEeC
Confidence 5555441 2 5666666
No 326
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.75 E-value=2.4e-18 Score=213.17 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=121.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~-- 438 (589)
.+|+++++.+.+|+ +++|+||||||||||+++|+|+++|++|+|.+.|.|+. ++|+++|...+...+.
T Consensus 944 ~aL~~lsl~I~~Ge--i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 944 PAVDRLNITFYENQ--ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred eEEEeeEEEEcCCc--EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 48999999999999 99999999999999999999999999999999998762 2678888654433331
Q ss_pred --cceeccCCCC---CHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 439 --VPIFEKGYEK---DPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 439 --v~l~~~~~~~---d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
+.++...++. +....+.++++.+++.+.....+. .||||+||+.||++|+. +|+++|| ||||+|||+.
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~-----~PkVLLL-DEPTSGLDp~ 1095 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG-----DAKVVVL-DEPTSGVDPY 1095 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-ECCCcCCCHH
Confidence 1122221221 123456678888888765444554 49999999999999994 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+. .+.+.|.++.. +.++|++|+
T Consensus 1096 sr~-~l~~lL~~l~~-----g~TIIltTH 1118 (2272)
T TIGR01257 1096 SRR-SIWDLLLKYRS-----GRTIIMSTH 1118 (2272)
T ss_pred HHH-HHHHHHHHHhC-----CCEEEEEEC
Confidence 874 44477777631 566777776
No 327
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=2.3e-18 Score=194.70 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=115.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ .++|+|+||+||||+++.|+|++.|++|+|.++|.|.. ++++++|...+ .
T Consensus 355 ~il~~i~l~i~~Ge--~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~ 432 (592)
T PRK10790 355 LVLQNINLSVPSRG--FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL 432 (592)
T ss_pred ceeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHH
Confidence 48999999999999 99999999999999999999999999999999998762 38899997644 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. +.. ..+. +.+.++++.+++. +++..+ ...|||++||++|||+|.+ +|+++||
T Consensus 433 ~NI~--~~~---~~~d-~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~-----~~~illl- 500 (592)
T PRK10790 433 ANVT--LGR---DISE-EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ-----TPQILIL- 500 (592)
T ss_pred HHHH--hCC---CCCH-HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh-----CCCEEEE-
Confidence 3332 221 1222 2345555555432 344433 2349999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+++|+.... .+.+.+..+.. ..+.|++|+
T Consensus 501 DEpts~LD~~t~~-~i~~~l~~~~~-----~~tvIivtH 533 (592)
T PRK10790 501 DEATANIDSGTEQ-AIQQALAAVRE-----HTTLVVIAH 533 (592)
T ss_pred eCCcccCCHHHHH-HHHHHHHHHhC-----CCEEEEEec
Confidence 9999999998764 44466665542 467788877
No 328
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=2.6e-18 Score=193.22 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=111.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhH-hhhhcc------ccce
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR-THARRL------QVPI 441 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~-~~~~~l------~v~l 441 (589)
.+|++|+|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+ +.+ .++|+++|.. .+...+ ....
T Consensus 338 ~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~-~~i~~v~q~~~~~~~~~tv~e~l~~~~ 413 (556)
T PRK11819 338 LLIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GET-VKLAYVDQSRDALDPNKTVWEEISGGL 413 (556)
T ss_pred eeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc-eEEEEEeCchhhcCCCCCHHHHHHhhc
Confidence 48999999999999 99999999999999999999999999999998 333 4789999864 222222 1111
Q ss_pred eccCCCCCHHHHHHHHHHHhcccC-C-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHH
Q 007789 442 FEKGYEKDPAIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 519 (589)
Q Consensus 442 ~~~~~~~d~~~ia~~al~~a~l~~-~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 519 (589)
........ ...+..+++.+++.+ . +..+-..||||+||+.|+++|+. +|+++|| ||||+|||+..+. .+.
T Consensus 414 ~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~-----~p~lllL-DEPt~~LD~~~~~-~l~ 485 (556)
T PRK11819 414 DIIKVGNR-EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ-----GGNVLLL-DEPTNDLDVETLR-ALE 485 (556)
T ss_pred cccccccc-HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCCCCCCHHHHH-HHH
Confidence 00111111 223446777777753 2 33444559999999999999994 9999998 9999999999874 333
Q ss_pred HHHHHhhcCCCCCCccEEEEcc
Q 007789 520 QKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 520 ~~l~~l~~~~~~~~it~IIlTK 541 (589)
+.|..+. + +.|++|+
T Consensus 486 ~~l~~~~------~-tvi~vtH 500 (556)
T PRK11819 486 EALLEFP------G-CAVVISH 500 (556)
T ss_pred HHHHhCC------C-eEEEEEC
Confidence 5555431 2 5666666
No 329
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.75 E-value=2.6e-18 Score=193.90 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=116.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ .++|+||||+||||+++.|+|++.|++|+|.+.+.|+. .+++++|...+ .
T Consensus 354 ~il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 431 (574)
T PRK11160 354 PVLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431 (574)
T ss_pred cceecceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence 38999999999999 99999999999999999999999999999999998862 27888887643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc-------CCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN-------GSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~-------~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
+++. +.. ...+. +.+.++++.+++. ++|..+- ..|||++||++|||+|.+ +|++++| |
T Consensus 432 ~Ni~--~~~--~~~~~-~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~-----~~~ilil-D 500 (574)
T PRK11160 432 DNLL--LAA--PNASD-EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH-----DAPLLLL-D 500 (574)
T ss_pred HHhh--cCC--CccCH-HHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-e
Confidence 3322 211 11122 3345566665543 2343332 249999999999999996 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
|||+++|+.... .+.+.+..+.. +.+.|++|+-
T Consensus 501 E~ts~lD~~t~~-~i~~~l~~~~~-----~~tviiitHr 533 (574)
T PRK11160 501 EPTEGLDAETER-QILELLAEHAQ-----NKTVLMITHR 533 (574)
T ss_pred CCcccCCHHHHH-HHHHHHHHHcC-----CCEEEEEecC
Confidence 999999999864 44466665532 5677888773
No 330
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.75 E-value=5.6e-18 Score=190.46 Aligned_cols=181 Identities=18% Similarity=0.126 Sum_probs=126.2
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhccccc
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQVP 440 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l~v~ 440 (589)
+|+++++++++|+ +++|+||||+||||+++.|+|++.|++|+|.+.|.|+. .++++.|...+....-.+
T Consensus 357 ~l~~vs~~i~~G~--~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 434 (555)
T TIGR01194 357 ALGPIDLRIAQGD--IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP 434 (555)
T ss_pred eeccceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhc
Confidence 7899999999999 99999999999999999999999999999999998863 266777755432221000
Q ss_pred eeccCCCCCHHHHHHHHHHHhcccCCCc-------cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 441 IFEKGYEKDPAIVAKEAIQEATRNGSDV-------VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 441 l~~~~~~~d~~~ia~~al~~a~l~~~d~-------vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
........+.+.++++.+++..+-. .....||||+||++|+|+|.+ +|+++|| ||||++||+..
T Consensus 435 ---n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~-----~~~ilil-DE~ts~LD~~~ 505 (555)
T TIGR01194 435 ---DEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE-----DRPILLF-DEWAADQDPAF 505 (555)
T ss_pred ---ccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCccCCCHHH
Confidence 0011112334556677665543211 123459999999999999996 9999998 99999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCccccc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 576 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~ 576 (589)
....++..+..+.. .+.+.|++|+-..+ + ..--.|..+..|+-++++.
T Consensus 506 ~~~i~~~l~~~~~~----~~~tiiiisH~~~~-------~----~~~d~i~~l~~G~i~~~~~ 553 (555)
T TIGR01194 506 KRFFYEELLPDLKR----QGKTIIIISHDDQY-------F----ELADQIIKLAAGCIVKDTE 553 (555)
T ss_pred HHHHHHHHHHHHHh----CCCEEEEEeccHHH-------H----HhCCEEEEEECCEEEEecC
Confidence 75444333333322 25788888873211 1 1234577778887766653
No 331
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.75 E-value=2.2e-18 Score=181.71 Aligned_cols=144 Identities=21% Similarity=0.143 Sum_probs=104.6
Q ss_pred EEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcccc----ceeccCCCCC---HHHH
Q 007789 388 FVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV----PIFEKGYEKD---PAIV 453 (589)
Q Consensus 388 LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~v----~l~~~~~~~d---~~~i 453 (589)
|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|...+...+.+ .+....++.. ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999999999999999997763 37888886543332211 1111111111 2244
Q ss_pred HHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007789 454 AKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 532 (589)
Q Consensus 454 a~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~ 532 (589)
+.++++.+++..+....+ ..||||+||+.|+++|+. +|+++|| ||||+|||+..+. .+.+.|.++... .
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~-----~p~lllL-DEP~s~LD~~~~~-~l~~~l~~l~~~---~ 150 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF-----KPKILLL-DEPLSALDKKLRD-QMQLELKTIQEQ---L 150 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHh-----CCCEEEE-eCCCccCCHHHHH-HHHHHHHHHHHh---c
Confidence 567788777766544444 459999999999999995 9999998 9999999999864 444667666543 2
Q ss_pred CccEEEEcc
Q 007789 533 LIDGILLTK 541 (589)
Q Consensus 533 ~it~IIlTK 541 (589)
+.+.|++|+
T Consensus 151 g~tiiivTH 159 (325)
T TIGR01187 151 GITFVFVTH 159 (325)
T ss_pred CCEEEEEeC
Confidence 677788877
No 332
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.75 E-value=2.9e-18 Score=193.84 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=114.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ .++|+|+||+|||||++.|+|++.|+.|.|.+.+.|+. ++++++|...+ .
T Consensus 349 ~iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~ 426 (588)
T PRK13657 349 QGVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE 426 (588)
T ss_pred ceecceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHH
Confidence 47999999999999 99999999999999999999999999999999998762 48888887633 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. +.. ...+. +.+..+++.+++ .+++..+-+ .|||++||++|||+|.+ +|++++|
T Consensus 427 ~Ni~--~~~--~~~~d-~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~-----~~~iliL- 495 (588)
T PRK13657 427 DNIR--VGR--PDATD-EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK-----DPPILIL- 495 (588)
T ss_pred HHHh--cCC--CCCCH-HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 3332 211 11122 223444444432 244544433 59999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||++||+......+ +.+..+.. +.+.|++|+
T Consensus 496 DEpts~LD~~t~~~i~-~~l~~~~~-----~~tvIiitH 528 (588)
T PRK13657 496 DEATSALDVETEAKVK-AALDELMK-----GRTTFIIAH 528 (588)
T ss_pred eCCccCCCHHHHHHHH-HHHHHHhc-----CCEEEEEEe
Confidence 9999999998765443 55554432 577888887
No 333
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.75 E-value=4.3e-18 Score=191.32 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=116.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++.+++|+ .++|+|+||+||||+++.|+|++.|++|+|.+.+.|+- .+++++|...+ .
T Consensus 346 ~il~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 346 PALDSISLVIEPGE--TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred ccccCeeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 37899999999999 99999999999999999999999999999999997752 37888887643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. ++.. ...+ .+...++++.+++ .++|..+-+ .|||++||++|||+|.+ +|++++|
T Consensus 424 ~Ni~--~~~~-~~~~-~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~-----~~~illL- 493 (571)
T TIGR02203 424 NNIA--YGRT-EQAD-RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK-----DAPILIL- 493 (571)
T ss_pred HHHh--cCCC-CCCC-HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 3332 2210 0112 2334455555443 234544432 39999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
||||++||+...... .+.|..+.. +.+.|++|+-.
T Consensus 494 DEpts~LD~~~~~~i-~~~L~~~~~-----~~tiIiitH~~ 528 (571)
T TIGR02203 494 DEATSALDNESERLV-QAALERLMQ-----GRTTLVIAHRL 528 (571)
T ss_pred eCccccCCHHHHHHH-HHHHHHHhC-----CCEEEEEehhh
Confidence 999999999987544 366655532 56788888843
No 334
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.74 E-value=6.4e-18 Score=189.59 Aligned_cols=178 Identities=14% Similarity=0.074 Sum_probs=124.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQV 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l~v 439 (589)
.+|+++++++++|+ .++|+||||+||||+++.|+|++.|+.|+|.+.|.|+. ++++++|...+.+..-.
T Consensus 337 ~~l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 414 (547)
T PRK10522 337 FSVGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLG 414 (547)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhc
Confidence 37999999999999 99999999999999999999999999999999998863 37777776654332110
Q ss_pred ceeccCCCCCHHHHHHHHHHHhcccCCCcc------ccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 440 PIFEKGYEKDPAIVAKEAIQEATRNGSDVV------LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 440 ~l~~~~~~~d~~~ia~~al~~a~l~~~d~v------liDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
..+. ....+.+.++++.+++...-.. -...||||+||++|||+|.+ +|+++|| ||||++||+..
T Consensus 415 ---~n~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~-----~~~ilil-DE~ts~LD~~~ 484 (547)
T PRK10522 415 ---PEGK-PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE-----ERDILLL-DEWAADQDPHF 484 (547)
T ss_pred ---cccC-chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-ECCCCCCCHHH
Confidence 0111 1122345566666654322111 12459999999999999996 9999999 99999999987
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
.. .+.+.+...... .+.+.|++|+--. .... ---|..+..|+-++
T Consensus 485 ~~-~i~~~l~~~~~~---~~~tvi~itH~~~----------~~~~-~d~i~~l~~G~i~e 529 (547)
T PRK10522 485 RR-EFYQVLLPLLQE---MGKTIFAISHDDH----------YFIH-ADRLLEMRNGQLSE 529 (547)
T ss_pred HH-HHHHHHHHHHHh---CCCEEEEEEechH----------HHHh-CCEEEEEECCEEEE
Confidence 64 333555433211 2567888887321 1111 23567777777653
No 335
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.6e-18 Score=196.17 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=111.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHh--hhhcccc-ceeccC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT--HARRLQV-PIFEKG 445 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~--~~~~l~v-~l~~~~ 445 (589)
.+|++++|.+.+|+ +++|+|||||||||||++|+|+++|++|+|.+... .++|++.|... +.....+ ..+...
T Consensus 326 ~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~igy~~Q~~~~~l~~~~~~~~~~~~~ 401 (638)
T PRK10636 326 IILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--IKLGYFAQHQLEFLRADESPLQHLARL 401 (638)
T ss_pred eeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--EEEEEecCcchhhCCccchHHHHHHHh
Confidence 48999999999999 99999999999999999999999999999998632 36899988531 1111111 111111
Q ss_pred CCCCHHHHHHHHHHHhcccC-CCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHH
Q 007789 446 YEKDPAIVAKEAIQEATRNG-SDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 523 (589)
Q Consensus 446 ~~~d~~~ia~~al~~a~l~~-~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~ 523 (589)
........+..++..+++.+ .....+ ..|||++||+.|+++|.. +|+++|| ||||+|||+.... .+.+.|.
T Consensus 402 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~-----~p~lLlL-DEPt~~LD~~~~~-~l~~~L~ 474 (638)
T PRK10636 402 APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ-----RPNLLLL-DEPTNHLDLDMRQ-ALTEALI 474 (638)
T ss_pred CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCCCCCCHHHHH-HHHHHHH
Confidence 11122345567777777642 223344 459999999999999995 9999998 9999999999764 4445555
Q ss_pred HhhcCCCCCCccEEEEcc
Q 007789 524 DLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 524 ~l~~~~~~~~it~IIlTK 541 (589)
.+ ..++|++|+
T Consensus 475 ~~-------~gtvi~vSH 485 (638)
T PRK10636 475 DF-------EGALVVVSH 485 (638)
T ss_pred Hc-------CCeEEEEeC
Confidence 44 226777776
No 336
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.74 E-value=4.1e-18 Score=196.61 Aligned_cols=154 Identities=19% Similarity=0.177 Sum_probs=114.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh-----hh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-----HA 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~-----~~ 434 (589)
.+|+++++++++|+ .++|+|+|||||||+++.|+|++.|++|+|.++|.|+. ++|+++|... +.
T Consensus 488 ~iL~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 565 (708)
T TIGR01193 488 NILSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL 565 (708)
T ss_pred cceeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHH
Confidence 47999999999999 99999999999999999999999999999999998862 4889998753 34
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.+. .. ...+. +.+.++++.+++ .+++..+- ..||||+||+.|||+|.+ +|+++||
T Consensus 566 eNi~l~--~~-~~~~~-~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~-----~p~iliL- 635 (708)
T TIGR01193 566 ENLLLG--AK-ENVSQ-DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT-----DSKVLIL- 635 (708)
T ss_pred HHHhcc--CC-CCCCH-HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh-----CCCEEEE-
Confidence 443321 10 11222 223445554433 23454443 249999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||++||+.... .+.+.|..+ .+.|.|++|+
T Consensus 636 DE~Ts~LD~~te~-~i~~~L~~~------~~~T~IiitH 667 (708)
T TIGR01193 636 DESTSNLDTITEK-KIVNNLLNL------QDKTIIFVAH 667 (708)
T ss_pred eCccccCCHHHHH-HHHHHHHHh------cCCEEEEEec
Confidence 9999999998764 343555443 1457788877
No 337
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=9.1e-18 Score=159.74 Aligned_cols=205 Identities=24% Similarity=0.265 Sum_probs=139.7
Q ss_pred HHHhcCcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcc-----cccCc---------
Q 007789 358 LVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA-----CDTFR--------- 423 (589)
Q Consensus 358 l~~il~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~-----~Dt~R--------- 423 (589)
+++.+.|.. -.++|+|.+.+|+ +++|||.+|+||||+|++|++-+.|+.|.|.... .|+|+
T Consensus 12 lsk~Yg~~~---gc~~vsF~l~PGe--VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L 86 (258)
T COG4107 12 LSKLYGPGK---GCRDVSFDLYPGE--VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRL 86 (258)
T ss_pred hhhhhCCCc---CccccceeecCCc--EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHH
Confidence 455565544 3579999999999 9999999999999999999999999999999876 34443
Q ss_pred ----cchhhhhHhhhhccccc--------e---eccCCCCCHHHHHHHHHHHhccc--CCCccccccCccccccHHHHHH
Q 007789 424 ----SGAVEQLRTHARRLQVP--------I---FEKGYEKDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRA 486 (589)
Q Consensus 424 ----igaveQL~~~~~~l~v~--------l---~~~~~~~d~~~ia~~al~~a~l~--~~d~vliDTSGg~qqr~~Lara 486 (589)
.|.|.|.+.-+-++.+. + -.+.|+ +....+.+.++.+.+. ..|..+-.-|||||||..|||-
T Consensus 87 ~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG-~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARn 165 (258)
T COG4107 87 LRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG-NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARN 165 (258)
T ss_pred hhhccceeecCccccceeeeccCCccchhHHhhhhhhhh-hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHH
Confidence 56666655332222211 1 112333 2344556667766543 2344444449999999999999
Q ss_pred HHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEE
Q 007789 487 LSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFV 566 (589)
Q Consensus 487 L~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fi 566 (589)
|. ..|.++++ ||||-|||..-|++.+ ..+..+.. ..++..+|+|+ |.. +.-++ ......+
T Consensus 166 LV-----t~PrLvfM-DEPTGGLDVSVQARLL-DllrgLv~---~l~la~viVTH-Dl~---VarLl------a~rlmvm 225 (258)
T COG4107 166 LV-----TRPRLVFM-DEPTGGLDVSVQARLL-DLLRGLVR---ELGLAVVIVTH-DLA---VARLL------ADRLMVM 225 (258)
T ss_pred hc-----cCCceEEe-cCCCCCcchhhHHHHH-HHHHHHHH---hcCceEEEEec-hhH---HHHHh------hhcceee
Confidence 99 59999998 9999999999888666 56655554 44899999998 432 11111 1223333
Q ss_pred ecCCCc---------ccccCCCHHHHHHHhh
Q 007789 567 GCGQSY---------TDLKKLNVKSIVKTLL 588 (589)
Q Consensus 567 g~Gq~v---------~DL~~~~~~~~v~~Ll 588 (589)
-.|+-+ +|-+..+.+-+|+.+|
T Consensus 226 k~g~vve~GLTDrvLDDP~hPYTQLLVSsvL 256 (258)
T COG4107 226 KQGQVVESGLTDRVLDDPHHPYTQLLVSSVL 256 (258)
T ss_pred cCCCEeccccccccccCCCCchHHHHHHHhc
Confidence 333333 4666677777777765
No 338
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.74 E-value=4.1e-18 Score=196.79 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=112.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++|+++++|+ .++||||||+||||+++.|+|++.|++|+|.++|.|+. ++++++|...+ .
T Consensus 495 ~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIr 572 (711)
T TIGR00958 495 PVLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572 (711)
T ss_pred ccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHH
Confidence 47999999999999 99999999999999999999999999999999998862 48899887643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++... .. ..+ .+...++++.+++. +++..+-+ .||||+||++|||+|.+ +|+++||
T Consensus 573 eNI~~g--~~--~~~-~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~-----~p~ILIL- 641 (711)
T TIGR00958 573 ENIAYG--LT--DTP-DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR-----KPRVLIL- 641 (711)
T ss_pred HHHhcC--CC--CCC-HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 333221 11 111 23344555554432 34544432 49999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+++|+......+ + .. ...+.|.|++|+
T Consensus 642 DEpTSaLD~~te~~i~-~----~~---~~~~~TvIiItH 672 (711)
T TIGR00958 642 DEATSALDAECEQLLQ-E----SR---SRASRTVLLIAH 672 (711)
T ss_pred EccccccCHHHHHHHH-H----hh---ccCCCeEEEEec
Confidence 9999999997653222 2 11 123678888887
No 339
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.74 E-value=4.3e-18 Score=194.28 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=110.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHh-h------hhccccce
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-H------ARRLQVPI 441 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~-~------~~~l~v~l 441 (589)
.+|++++|.+.+|+ +++|+|||||||||||++|+|+++|+.|+|.+ +.+ .++|++.|... + .+++....
T Consensus 333 ~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~-~~i~y~~q~~~~l~~~~tv~e~l~~~~ 408 (635)
T PRK11147 333 QLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK-LEVAYFDQHRAELDPEKTVMDNLAEGK 408 (635)
T ss_pred EEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC-cEEEEEeCcccccCCCCCHHHHHHhhc
Confidence 48999999999999 99999999999999999999999999999988 544 47899988531 2 22221111
Q ss_pred eccCCC-CCHHHHHHHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHH
Q 007789 442 FEKGYE-KDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 518 (589)
Q Consensus 442 ~~~~~~-~d~~~ia~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 518 (589)
. ... ......+..++..+++.. .+..+-..||||+||+.|+++|.. +|+++|| ||||+|||+... ..+
T Consensus 409 ~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~-----~p~lLlL-DEPt~~LD~~~~-~~l 479 (635)
T PRK11147 409 Q--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK-----PSNLLIL-DEPTNDLDVETL-ELL 479 (635)
T ss_pred c--cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCCCCCCHHHH-HHH
Confidence 1 111 111234455666665532 233334459999999999999994 9999998 999999999875 344
Q ss_pred HHHHHHhhcCCCCCCccEEEEcc
Q 007789 519 NQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 519 ~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.++ +.++|++|+
T Consensus 480 ~~~l~~~-------~~tvi~vSH 495 (635)
T PRK11147 480 EELLDSY-------QGTVLLVSH 495 (635)
T ss_pred HHHHHhC-------CCeEEEEEC
Confidence 4555433 336777776
No 340
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=9.9e-18 Score=182.08 Aligned_cols=160 Identities=21% Similarity=0.259 Sum_probs=113.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------c--cchhhhhHhhhhcccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------R--SGAVEQLRTHARRLQV 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------R--igaveQL~~~~~~l~v 439 (589)
.+|+++||+++.|+ -++|||+|||||||.|+.|.+++. .+|+|+|+|.|+. | +|+|+|...+.+.--+
T Consensus 366 ~iL~gvsf~I~kGe--kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl 442 (591)
T KOG0057|consen 366 KVLKGVSFTIPKGE--KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTIL 442 (591)
T ss_pred ceecceeEEecCCC--EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHH
Confidence 48999999999999 999999999999999999999998 8999999999983 3 8999997654433200
Q ss_pred ceeccCCCCC--HHHHHHHHHHHhccc--------CCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 440 PIFEKGYEKD--PAIVAKEAIQEATRN--------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 440 ~l~~~~~~~d--~~~ia~~al~~a~l~--------~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+...|+.. ..+.+.++.+++++. +|.... .-.|||++|++.|||++.| +|++++| |||
T Consensus 443 --~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK-----da~Il~~-DEa 514 (591)
T KOG0057|consen 443 --YNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK-----DAPILLL-DEA 514 (591)
T ss_pred --HHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc-----CCCeEEe-cCc
Confidence 01112211 113334455555442 222222 2239999999999999998 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccE-EEEcccccc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDG-ILLTKFDTI 545 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~-IIlTKlD~~ 545 (589)
|+.||.......+ +.+.+.. .+.|+ +|+..+|++
T Consensus 515 TS~LD~~TE~~i~-~~i~~~~-----~~rTvI~IvH~l~ll 549 (591)
T KOG0057|consen 515 TSALDSETEREIL-DMIMDVM-----SGRTVIMIVHRLDLL 549 (591)
T ss_pred ccccchhhHHHHH-HHHHHhc-----CCCeEEEEEecchhH
Confidence 9999998876555 3333321 13333 455556654
No 341
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.74 E-value=4.5e-18 Score=191.72 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=112.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ .++|+||||+||||+++.|+|++.|++|+|.+.+.++. +++++.|...+ .
T Consensus 329 ~~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 329 PALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred ccccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence 47999999999999 99999999999999999999999999999999988752 37888886533 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. +... .... +...++++.+++ .+++..+ ...|||++||+.|||+|.+ +|+++||
T Consensus 407 ~Ni~--~~~~--~~~~-~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~-----~~~illl- 475 (569)
T PRK10789 407 NNIA--LGRP--DATQ-QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL-----NAEILIL- 475 (569)
T ss_pred HHHh--cCCC--CCCH-HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 3332 2111 1112 223344444332 1233322 2359999999999999996 9999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
||||++||+...... .+.|..+.. +.+.|++|+-
T Consensus 476 DEpts~LD~~~~~~i-~~~l~~~~~-----~~tii~itH~ 509 (569)
T PRK10789 476 DDALSAVDGRTEHQI-LHNLRQWGE-----GRTVIISAHR 509 (569)
T ss_pred ECccccCCHHHHHHH-HHHHHHHhC-----CCEEEEEecc
Confidence 999999999886544 366665532 5677888773
No 342
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.73 E-value=7e-18 Score=194.32 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=114.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHh-----hh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-----HA 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~-----~~ 434 (589)
.+|+++++.+++|+ .++|+|+||+||||+++.|+|++.|++|+|.++|.|+. ++++++|... +.
T Consensus 471 ~il~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 471 EVLSNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548 (694)
T ss_pred cccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence 37999999999999 99999999999999999999999999999999998862 3788888653 33
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.+ .. ...+. +...++++.+++ .+++..+- ..||||+||+.|||+|.+ +|+++||
T Consensus 549 eNi~~--~~--~~~~~-~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~-----~~~ilil- 617 (694)
T TIGR01846 549 DNIAL--CN--PGAPF-EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG-----NPRILIF- 617 (694)
T ss_pred HHHhc--CC--CCCCH-HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh-----CCCEEEE-
Confidence 33322 11 11122 233344444332 13444332 349999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||++||+.... .+.+.|..+.. +.+.|++|+
T Consensus 618 DEpts~LD~~~~~-~i~~~l~~~~~-----~~t~i~itH 650 (694)
T TIGR01846 618 DEATSALDYESEA-LIMRNMREICR-----GRTVIIIAH 650 (694)
T ss_pred ECCCcCCCHHHHH-HHHHHHHHHhC-----CCEEEEEeC
Confidence 9999999999864 44466665532 567788887
No 343
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.73 E-value=7.6e-18 Score=188.81 Aligned_cols=157 Identities=22% Similarity=0.252 Sum_probs=111.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l-- 437 (589)
.+|+++++++++|+ .++|+|+||+||||+++.|+|++.|+.|+|.+.|.++. ++++++|...+...-
T Consensus 332 ~~l~~~~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~ 409 (544)
T TIGR01842 332 PTLRGISFRLQAGE--ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVA 409 (544)
T ss_pred cccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHH
Confidence 47999999999999 99999999999999999999999999999999998762 378888865432211
Q ss_pred -ccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 438 -QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 438 -~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
++.++.. ..+.. ...++++.+++ .+++..+ ...||||+||+.|||+|.+ +|+++|| ||
T Consensus 410 ~Ni~~~~~--~~~~~-~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~-----~~~ilil-DE 480 (544)
T TIGR01842 410 ENIARFGE--NADPE-KIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG-----DPKLVVL-DE 480 (544)
T ss_pred HHHhccCC--CCCHH-HHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc-----CCCEEEE-eC
Confidence 1111111 11222 22233333221 1333322 3349999999999999995 9999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+++|+.... .+.+.+..+.. .+.+.|++|+
T Consensus 481 pts~LD~~~~~-~i~~~l~~~~~----~~~tvi~ith 512 (544)
T TIGR01842 481 PNSNLDEEGEQ-ALANAIKALKA----RGITVVVITH 512 (544)
T ss_pred CccccCHHHHH-HHHHHHHHHhh----CCCEEEEEeC
Confidence 99999998764 44466665542 2567788777
No 344
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.73 E-value=5.6e-18 Score=190.35 Aligned_cols=155 Identities=21% Similarity=0.161 Sum_probs=108.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhc------ccccee
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARR------LQVPIF 442 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~------l~v~l~ 442 (589)
.+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+. .++|+++|...+... +...+.
T Consensus 19 ~il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~~~~~tv~e~i~~~~~ 94 (552)
T TIGR03719 19 EILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--IKVGYLPQEPQLDPTKTVRENVEEGVA 94 (552)
T ss_pred eeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCCCCCCcHHHHHHHhhH
Confidence 48999999999999 99999999999999999999999999999988642 358888886533222 211110
Q ss_pred c-c-------------CCCCCH-----------------------HHHHHHHHHHhcccCCCccccccCccccccHHHHH
Q 007789 443 E-K-------------GYEKDP-----------------------AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMR 485 (589)
Q Consensus 443 ~-~-------------~~~~d~-----------------------~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~Lar 485 (589)
. . ....+. ...+.++++.+++...+..+-..||||+||+.|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~ 174 (552)
T TIGR03719 95 EIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCR 174 (552)
T ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHH
Confidence 0 0 000010 12233445555553333344455999999999999
Q ss_pred HHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 486 ALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 486 aL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|+. +|+++|| ||||++||+..+.. +.+.|.++ ..+.|++|+
T Consensus 175 al~~-----~p~lLLL-DEPt~~LD~~~~~~-l~~~L~~~-------~~tvIiisH 216 (552)
T TIGR03719 175 LLLS-----KPDMLLL-DEPTNHLDAESVAW-LEQHLQEY-------PGTVVAVTH 216 (552)
T ss_pred HHhc-----CCCEEEE-cCCCCCCChHHHHH-HHHHHHhC-------CCeEEEEeC
Confidence 9994 9999998 99999999998743 33455433 236667666
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=99.73 E-value=4.3e-18 Score=192.51 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=108.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEE-----------EcccccCc-----------cch
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTFR-----------SGA 426 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~-----------l~~~Dt~R-----------iga 426 (589)
.+|++++ .+.+|+ +++|+||||+||||+++.|+|+++|+.|+|. +.|.++.. +++
T Consensus 88 ~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 88 FKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred eeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 4789998 899999 9999999999999999999999999999997 66665421 122
Q ss_pred hhhhHhhhhcc-ccceeccCCCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 427 VEQLRTHARRL-QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 427 veQL~~~~~~l-~v~l~~~~~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
..|.......+ ...+.......+....+.++++.+++... +..+-+.||||+|++.||++|+. +|+++|| ||
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~-----~p~lllL-DE 238 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR-----DADFYFF-DE 238 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-EC
Confidence 22211111000 00000000011223456677777777654 33444559999999999999995 9999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||++||+..+...+ +.|..+.. +.+.|++|+
T Consensus 239 Pts~LD~~~~~~l~-~~i~~l~~-----g~tvIivsH 269 (590)
T PRK13409 239 PTSYLDIRQRLNVA-RLIRELAE-----GKYVLVVEH 269 (590)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHC-----CCEEEEEeC
Confidence 99999998765444 67776653 456666666
No 346
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.73 E-value=8.7e-18 Score=189.14 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=114.8
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----hh
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----AR 435 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~~ 435 (589)
+|+++++++++|+ .++|+|+||+||||+++.|+|++.|..|+|.+++.++. .+++++|...+ .+
T Consensus 355 iL~~inl~i~~Ge--~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~ 432 (576)
T TIGR02204 355 ALDGLNLTVRPGE--TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVME 432 (576)
T ss_pred cccceeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHH
Confidence 7999999999999 99999999999999999999999999999999997752 37888887643 33
Q ss_pred ccccceeccCCCCCHHHHHHHHHHHhccc--------CCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 436 RLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 436 ~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
++... . ...+ .+.+.++++.+++. +++..+. ..|||++||+.|||+|.+ +|++++| |
T Consensus 433 Ni~~~--~--~~~~-~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~-----~~~ilil-D 501 (576)
T TIGR02204 433 NIRYG--R--PDAT-DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK-----DAPILLL-D 501 (576)
T ss_pred HHhcC--C--CCCC-HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh-----CCCeEEE-e
Confidence 33221 1 1112 23344455544321 3343332 249999999999999996 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
|||+++|+.... .+.+.+..+.. +.+.|++|+-.
T Consensus 502 Epts~lD~~~~~-~i~~~l~~~~~-----~~t~IiitH~~ 535 (576)
T TIGR02204 502 EATSALDAESEQ-LVQQALETLMK-----GRTTLIIAHRL 535 (576)
T ss_pred CcccccCHHHHH-HHHHHHHHHhC-----CCEEEEEecch
Confidence 999999999764 44466665532 56788888844
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.1e-17 Score=157.71 Aligned_cols=126 Identities=27% Similarity=0.344 Sum_probs=96.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
.+|+++++.+.+|+ +++|+|+||+||||+++.|+|++.+..|+|.+.+.+....... .+... +.+
T Consensus 13 ~~l~~~~~~i~~g~--~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~----~~~~~--i~~------- 77 (157)
T cd00267 13 TALDNVSLTLKAGE--IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE----ELRRR--IGY------- 77 (157)
T ss_pred eeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHH----HHHhc--eEE-------
Confidence 58999999999999 9999999999999999999999999999999998765321000 00001 110
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
+.+.||||++++.|+++|+. +|+++++ ||||+|+|...+ ..+.+.+..+...
T Consensus 78 ---------------------~~qlS~G~~~r~~l~~~l~~-----~~~i~il-DEp~~~lD~~~~-~~l~~~l~~~~~~ 129 (157)
T cd00267 78 ---------------------VPQLSGGQRQRVALARALLL-----NPDLLLL-DEPTSGLDPASR-ERLLELLRELAEE 129 (157)
T ss_pred ---------------------EeeCCHHHHHHHHHHHHHhc-----CCCEEEE-eCCCcCCCHHHH-HHHHHHHHHHHHC
Confidence 01189999999999999994 9999998 999999999876 4555777666542
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
+.+.+++|+
T Consensus 130 ----~~tii~~sh 138 (157)
T cd00267 130 ----GRTVIIVTH 138 (157)
T ss_pred ----CCEEEEEeC
Confidence 345566655
No 348
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=1.7e-17 Score=154.59 Aligned_cols=164 Identities=21% Similarity=0.196 Sum_probs=125.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC---CcEEEEccccc-------CccchhhhhHhhhhccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDT-------FRSGAVEQLRTHARRLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~---~GkV~l~~~Dt-------~RigaveQL~~~~~~l~ 438 (589)
.+|-++++++.+|+ |+.|.||+||||||+++-++|.+.+. .|++.+.+.++ ..+|..+|..-+...+.
T Consensus 16 cLLa~~n~Tia~Ge--ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 16 CLLANVNFTIAKGE--IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred eEEEeeeEEecCCc--EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 46889999999999 99999999999999999999999875 69999998876 24888888776666554
Q ss_pred cc------eeccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 439 VP------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 439 v~------l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
|- +-....+......+..++++.++.++-..-.+| |||++-|++|+|+|.. +|..+|| |||++.||.
T Consensus 94 Vg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla-----~Pk~lLL-DEPFS~LD~ 167 (213)
T COG4136 94 VGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA-----QPKALLL-DEPFSRLDV 167 (213)
T ss_pred cccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh-----Ccceeee-CCchhHHHH
Confidence 32 111222333446677889998888876777777 9999999999999994 9999998 999999998
Q ss_pred HHHHHHHHHHH-HHhhcCCCCCCccEEEEccccccc
Q 007789 512 VDQLSKFNQKL-ADLSSSPNPQLIDGILLTKFDTID 546 (589)
Q Consensus 512 ~~q~~~f~~~l-~~l~~~~~~~~it~IIlTKlD~~d 546 (589)
.-+ ..|.+-+ .++ +..+|-.+.+|+ |.-|
T Consensus 168 ALR-~qfR~wVFs~~----r~agiPtv~VTH-D~~D 197 (213)
T COG4136 168 ALR-DQFRQWVFSEV----RAAGIPTVQVTH-DLQD 197 (213)
T ss_pred HHH-HHHHHHHHHHH----HhcCCCeEEEec-cccc
Confidence 754 4444332 222 234777788887 5543
No 349
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=2.6e-17 Score=164.41 Aligned_cols=183 Identities=21% Similarity=0.144 Sum_probs=132.1
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc--C--ccchhhhhHhhhhcccccee
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--F--RSGAVEQLRTHARRLQVPIF 442 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt--~--RigaveQL~~~~~~l~v~l~ 442 (589)
.+.+|+||+|++.+|+ .++|||+|||||||||+.|||.++|+.|+|.+.|.=. + -.|..+++--..+..-..++
T Consensus 39 ~~~aL~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~ 116 (249)
T COG1134 39 EFWALKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLI 116 (249)
T ss_pred eEEEecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHH
Confidence 3679999999999999 9999999999999999999999999999999887432 2 23443433221111111111
Q ss_pred ccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHH
Q 007789 443 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 521 (589)
Q Consensus 443 ~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 521 (589)
.....++..+.+.++++.+.+.+|-..++.| |-||+-|++++-+.. .+||++|+ ||.++--|+.-+.+-. +.
T Consensus 117 ~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~-----~~pdILll-DEvlavGD~~F~~K~~-~r 189 (249)
T COG1134 117 LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATH-----VEPDILLL-DEVLAVGDAAFQEKCL-ER 189 (249)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhh-----cCCCEEEE-ehhhhcCCHHHHHHHH-HH
Confidence 1111334557788899999999999999999 999999999988888 59999998 9999999987664333 45
Q ss_pred HHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 522 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 522 l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
+.++.+. +.+.+++|+ |. +.+ ....-.+.++-.||-.
T Consensus 190 l~e~~~~----~~tiv~VSH-d~-----~~I----~~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 190 LNELVEK----NKTIVLVSH-DL-----GAI----KQYCDRAIWLEHGQIR 226 (249)
T ss_pred HHHHHHc----CCEEEEEEC-CH-----HHH----HHhcCeeEEEeCCEEE
Confidence 5555433 466677776 21 223 3344467888888764
No 350
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.72 E-value=1.4e-17 Score=189.58 Aligned_cols=161 Identities=19% Similarity=0.174 Sum_probs=120.3
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC---CcEEEEcccccC------ccchhhhhHhhhhccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTF------RSGAVEQLRTHARRLQ 438 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~---~GkV~l~~~Dt~------RigaveQL~~~~~~l~ 438 (589)
..+|+++++.+++|+ +++|+||||+||||||+.|+|...+. .|+|.++|.+.. ++|+++|...+...+.
T Consensus 38 ~~iL~~vs~~i~~Ge--~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 38 KHLLKNVSGVAKPGE--LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred cccccCCEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 458999999999999 99999999999999999999988774 699999998752 4799999765544432
Q ss_pred cc----ee--ccCC----CCCHHHHHHHHHHHhcccCCCccccc-------cCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 439 VP----IF--EKGY----EKDPAIVAKEAIQEATRNGSDVVLVD-------TAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 439 v~----l~--~~~~----~~d~~~ia~~al~~a~l~~~d~vliD-------TSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
|. +. .+.. ..+....+.++++.+++.+.....+. .|||++||+.|+++|.. +|+++++
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~-----~p~vlll 190 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT-----DPPLLFC 190 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc-----CCCEEEe
Confidence 21 11 0111 11223456778888877655444432 59999999999999995 9999888
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+...+ +.++.++.. +.+.|+.++
T Consensus 191 -DEPtsgLD~~~~~~l~-~~L~~l~~~----g~tvi~~~h 224 (617)
T TIGR00955 191 -DEPTSGLDSFMAYSVV-QVLKGLAQK----GKTIICTIH 224 (617)
T ss_pred -eCCCcchhHHHHHHHH-HHHHHHHhC----CCEEEEEeC
Confidence 9999999999875444 777777643 556555555
No 351
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.72 E-value=1e-17 Score=188.52 Aligned_cols=172 Identities=20% Similarity=0.264 Sum_probs=120.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++++|.+++|+ .++||||+||||||+++.|++++.|+.|+|.++|.|+. ++++|+|...+ .
T Consensus 343 ~vl~~is~~i~~Ge--~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~ 420 (567)
T COG1132 343 PVLKDISFSIEPGE--KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR 420 (567)
T ss_pred ccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHH
Confidence 48999999999999 99999999999999999999999999999999998872 48888886643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhc-------c-cCCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEAT-------R-NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~-------l-~~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. +.... ... +.+.++++.+. + .+++..+- ..||||+||++|||+|.+ +|++++|
T Consensus 421 ~NI~--~g~~~--at~-eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~-----~~~ILIL- 489 (567)
T COG1132 421 ENIA--LGRPD--ATD-EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR-----NPPILIL- 489 (567)
T ss_pred HHHh--cCCCC--CCH-HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 3332 21111 111 22333433332 1 24665554 349999999999999996 9999988
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccchhhhhHhHHHhCCCEEEEecCCC
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQS 571 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k~G~als~~~~~g~PI~fig~Gq~ 571 (589)
||||+++|+...... .+.+..+.+ +-|.+++++ +.++ .. --.|..+..|+-
T Consensus 490 DEaTSalD~~tE~~I-~~~l~~l~~-----~rT~iiIaHRlsti-----------~~-aD~IiVl~~G~i 541 (567)
T COG1132 490 DEATSALDTETEALI-QDALKKLLK-----GRTTLIIAHRLSTI-----------KN-ADRIIVLDNGRI 541 (567)
T ss_pred eccccccCHHhHHHH-HHHHHHHhc-----CCEEEEEeccHhHH-----------Hh-CCEEEEEECCEE
Confidence 999999999976433 366655542 225555554 4332 11 335677777763
No 352
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.2e-17 Score=183.28 Aligned_cols=177 Identities=20% Similarity=0.190 Sum_probs=127.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l-- 437 (589)
.+++++++++++|+ .++|||+|||||||+++.|+|+++|+.|+|.+++.+.- ++++|.|.+.+...-
T Consensus 335 ~~l~~l~~t~~~g~--~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTir 412 (559)
T COG4988 335 PALSDLNLTIKAGQ--LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412 (559)
T ss_pred cccCCceeEecCCc--EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHH
Confidence 47899999999999 99999999999999999999999999999999988762 377888866442211
Q ss_pred -ccceeccCCCCCHHHHHHHHHHHhcc-------cCCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 438 -QVPIFEKGYEKDPAIVAKEAIQEATR-------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 438 -~v~l~~~~~~~d~~~ia~~al~~a~l-------~~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
++.++. ... ..+.+.++++.+++ .+.|..+-+ .|||+.||+.|||+|.. +++++|| |||
T Consensus 413 eNi~l~~--~~~-s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~-----~~~l~ll-DEp 483 (559)
T COG4988 413 ENILLAR--PDA-SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS-----PASLLLL-DEP 483 (559)
T ss_pred HHhhccC--CcC-CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC-----CCCEEEe-cCC
Confidence 232221 111 12334455555543 245666666 49999999999999994 8888888 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
|++||+.+.. ...+.|.++++ .-+.+++|+=... + ..---|.++-.|+-++
T Consensus 484 TA~LD~etE~-~i~~~l~~l~~-----~ktvl~itHrl~~------~-----~~~D~I~vld~G~l~~ 534 (559)
T COG4988 484 TAHLDAETEQ-IILQALQELAK-----QKTVLVITHRLED------A-----ADADRIVVLDNGRLVE 534 (559)
T ss_pred ccCCCHhHHH-HHHHHHHHHHh-----CCeEEEEEcChHH------H-----hcCCEEEEecCCceec
Confidence 9999998754 44466666665 4577888873332 1 1223577777777664
No 353
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.72 E-value=1e-17 Score=191.61 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=120.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~ 434 (589)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 21 ~~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~ 98 (648)
T PRK10535 21 VEVLKGISLDIYAGE--MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLL 98 (648)
T ss_pred eeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccC
Confidence 358999999999999 99999999999999999999999999999999998753 267777765433
Q ss_pred hccc------cceeccC-CCCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 435 RRLQ------VPIFEKG-YEKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 435 ~~l~------v~l~~~~-~~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
..+. ......+ ...+....+.++++.+++.......+. .||||+|++.|+++|+. +|+++|| ||||
T Consensus 99 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~-----~P~lLll-DEP~ 172 (648)
T PRK10535 99 SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN-----GGQVILA-DEPT 172 (648)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-ECCC
Confidence 2221 1111111 111223455667777776654444444 49999999999999994 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
.|||+..+. .+.+.+.++.+. +.+.+++|+-
T Consensus 173 ~gLD~~s~~-~l~~ll~~l~~~----g~tilivsH~ 203 (648)
T PRK10535 173 GALDSHSGE-EVMAILHQLRDR----GHTVIIVTHD 203 (648)
T ss_pred CCCCHHHHH-HHHHHHHHHHhc----CCEEEEECCC
Confidence 999999874 444777766532 6677787773
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=1.1e-17 Score=190.99 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=105.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc---------C-ccchhhhhHh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------F-RSGAVEQLRT-----H 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt---------~-RigaveQL~~-----~ 433 (589)
.+|++|+|.+.+|+ +++|+|||||||||||++|+|++.|++|+|.+.+... . ..+.+.|... +
T Consensus 17 ~il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~ 94 (635)
T PRK11147 17 PLLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQ 94 (635)
T ss_pred eeEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHH
Confidence 58999999999999 9999999999999999999999999999999875210 0 1122332110 0
Q ss_pred ------hhccc-----------ccee-------ccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHh
Q 007789 434 ------ARRLQ-----------VPIF-------EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 489 (589)
Q Consensus 434 ------~~~l~-----------v~l~-------~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~k 489 (589)
...+. +..+ ....+.+....+.++++.+++. .+..+-..|||++||+.||++|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekqRv~LAraL~~ 173 (635)
T PRK11147 95 AEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLRKAALGRALVS 173 (635)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHHHHHHHHHHhc
Confidence 00000 0000 0001112334566777777764 244444459999999999999994
Q ss_pred hhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 490 LIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 490 l~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|+++|| ||||++||+..+. .+.+.|..+ ..++|++|+
T Consensus 174 -----~P~lLLL-DEPt~~LD~~~~~-~L~~~L~~~-------~~tvlivsH 211 (635)
T PRK11147 174 -----NPDVLLL-DEPTNHLDIETIE-WLEGFLKTF-------QGSIIFISH 211 (635)
T ss_pred -----CCCEEEE-cCCCCccCHHHHH-HHHHHHHhC-------CCEEEEEeC
Confidence 9999998 9999999998763 333555433 236667665
No 355
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.72 E-value=8.8e-18 Score=190.02 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=110.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l-- 437 (589)
.+|+++++++++|+ .++|+||||+||||+++.|+|+++|++|+|.+.+.|.. .+++++|...+...-
T Consensus 349 ~~l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 349 QGVFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426 (585)
T ss_pred ccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHH
Confidence 37899999999999 99999999999999999999999999999999998752 377888865432210
Q ss_pred -ccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 438 -QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 438 -~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
++.+... ..+..+ ..++++.+++ .+++..+ ...|||++||+.|||+|.+ +|+++|| ||
T Consensus 427 ~Ni~~~~~--~~~~~~-~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~-----~p~ilil-DE 497 (585)
T TIGR01192 427 ENIRLGRE--GATDEE-VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK-----NAPILVL-DE 497 (585)
T ss_pred HHHhcCCC--CCCHHH-HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-EC
Confidence 1111111 111222 2233332211 1233222 2349999999999999996 9999999 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||++||+... +.+.+.|..+.. +.+.|++|+
T Consensus 498 pts~LD~~~~-~~i~~~l~~~~~-----~~tvI~isH 528 (585)
T TIGR01192 498 ATSALDVETE-ARVKNAIDALRK-----NRTTFIIAH 528 (585)
T ss_pred CccCCCHHHH-HHHHHHHHHHhC-----CCEEEEEEc
Confidence 9999999876 444466665532 567788777
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=99.72 E-value=1.2e-17 Score=192.46 Aligned_cols=174 Identities=17% Similarity=0.184 Sum_probs=119.2
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhcc--ccc-eeccCC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--QVP-IFEKGY 446 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l--~v~-l~~~~~ 446 (589)
+|++++|.+.+|+ +++|+|||||||||||++|+|+++|+.|+|.+.+. .++|+++|.....-.+ ... .+...+
T Consensus 524 il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--~~igyv~Q~~~~~l~~~~~~~~~~~~~~ 599 (718)
T PLN03073 524 LFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VRMAVFSQHHVDGLDLSSNPLLYMMRCF 599 (718)
T ss_pred eEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--eeEEEEeccccccCCcchhHHHHHHHhc
Confidence 7899999999999 99999999999999999999999999999988643 3688888854111001 000 000111
Q ss_pred CCCHHHHHHHHHHHhcccC-CCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 007789 447 EKDPAIVAKEAIQEATRNG-SDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 524 (589)
Q Consensus 447 ~~d~~~ia~~al~~a~l~~-~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~ 524 (589)
.......+..+++.+++.+ .....+ ..||||+||+.|+++|.. +|+++|| ||||+|||+..... +.+.+..
T Consensus 600 ~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~-----~p~lLLL-DEPT~~LD~~s~~~-l~~~L~~ 672 (718)
T PLN03073 600 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-----KPHILLL-DEPSNHLDLDAVEA-LIQGLVL 672 (718)
T ss_pred CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc-----CCCEEEE-cCCCCCCCHHHHHH-HHHHHHH
Confidence 1112345667788877753 323344 459999999999999994 9999998 99999999987643 3344432
Q ss_pred hhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCC
Q 007789 525 LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 571 (589)
Q Consensus 525 l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~ 571 (589)
+ .+ +.|++|+ |.- ......--|.++..|+-
T Consensus 673 ~------~g-tvIivSH-d~~---------~i~~~~drv~~l~~G~i 702 (718)
T PLN03073 673 F------QG-GVLMVSH-DEH---------LISGSVDELWVVSEGKV 702 (718)
T ss_pred c------CC-EEEEEEC-CHH---------HHHHhCCEEEEEECCEE
Confidence 2 13 6677776 431 12222345677777764
No 357
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.6e-17 Score=168.12 Aligned_cols=160 Identities=18% Similarity=0.117 Sum_probs=117.6
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-------------CccchhhhhHhhhhcccc
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHARRLQV 439 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-------------~RigaveQL~~~~~~l~v 439 (589)
+++|..+... +.+|.|++|+||||++++|+|+++|+.|.|.+++.-. .|+|||+|...+..++.|
T Consensus 16 ~a~~~~p~~G--vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARG--ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCc--eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 4566655434 9999999999999999999999999999999987422 369999998887777755
Q ss_pred ceeccCCCCCH--HHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 440 PIFEKGYEKDP--AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 440 ~l~~~~~~~d~--~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
.-- -.|+... .....+++..+++.++ +..+...|||++||++|.|||. ..|+++|+ |||++.||..-..+
T Consensus 94 rgN-L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALL-----t~P~LLLm-DEPLaSLD~~RK~E 166 (352)
T COG4148 94 RGN-LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALL-----TAPELLLM-DEPLASLDLPRKRE 166 (352)
T ss_pred ecc-hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHh-----cCCCeeee-cCchhhcccchhhH
Confidence 311 0122221 2234556777777765 4566666999999999999999 59999998 99999999765443
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc-cccc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK-FDTI 545 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK-lD~~ 545 (589)
.+ -.+..+.+.. .|-.+.+|+ +|++
T Consensus 167 il-pylERL~~e~---~IPIlYVSHS~~Ev 192 (352)
T COG4148 167 IL-PYLERLRDEI---NIPILYVSHSLDEV 192 (352)
T ss_pred HH-HHHHHHHHhc---CCCEEEEecCHHHH
Confidence 33 5566665543 666677776 5554
No 358
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.71 E-value=4.2e-17 Score=171.68 Aligned_cols=189 Identities=19% Similarity=0.203 Sum_probs=145.1
Q ss_pred CcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-----CcEEEEccccc-------------Ccc
Q 007789 363 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDT-------------FRS 424 (589)
Q Consensus 363 ~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-----~GkV~l~~~Dt-------------~Ri 424 (589)
++...++++++|+|.+..|+ +++|||.+|||||-+...|.++|... +|+|.+.|.|+ .++
T Consensus 18 ~~~~~~~aVk~isf~i~~GE--tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I 95 (534)
T COG4172 18 QEGGTVEAVKGISFDIEAGE--TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKI 95 (534)
T ss_pred cCCcceEeeccceeeecCCC--EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccce
Confidence 34455789999999999999 99999999999999999999998752 58999999997 258
Q ss_pred chhhhhH--------hhhhccc--cceeccCCCCCHHHHHHHHHHHhcccC----CCccccccCccccccHHHHHHHHhh
Q 007789 425 GAVEQLR--------THARRLQ--VPIFEKGYEKDPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKL 490 (589)
Q Consensus 425 gaveQL~--------~~~~~l~--v~l~~~~~~~d~~~ia~~al~~a~l~~----~d~vliDTSGg~qqr~~LaraL~kl 490 (589)
++++|.+ ++.+.+. +.+........+...+.+.++.+++.. ++..+-..|||++||+.||.||+
T Consensus 96 ~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa-- 173 (534)
T COG4172 96 GMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA-- 173 (534)
T ss_pred EEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc--
Confidence 8999855 3333331 122222233445566667777777654 35666777999999999999999
Q ss_pred hhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCC
Q 007789 491 IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570 (589)
Q Consensus 491 ~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq 570 (589)
++|++++. ||||+.||..-|++.+ +.|+++... .+...++||+ | ++++....--|..+..|+
T Consensus 174 ---n~P~lLIA-DEPTTALDVtvQaQIL-~Ll~~Lq~~---~gMa~lfITH-D---------L~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 174 ---NEPDLLIA-DEPTTALDVTVQAQIL-DLLKELQAE---LGMAILFITH-D---------LGIVRKFADRVYVMQHGE 235 (534)
T ss_pred ---CCCCeEee-cCCcchhhhhhHHHHH-HHHHHHHHH---hCcEEEEEec-c---------HHHHHHhhhhEEEEeccE
Confidence 69999999 9999999999998776 677777654 4888899987 4 345555555777788888
Q ss_pred Ccc
Q 007789 571 SYT 573 (589)
Q Consensus 571 ~v~ 573 (589)
-++
T Consensus 236 ivE 238 (534)
T COG4172 236 IVE 238 (534)
T ss_pred Eee
Confidence 764
No 359
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.70 E-value=6.1e-17 Score=155.24 Aligned_cols=184 Identities=19% Similarity=0.215 Sum_probs=133.6
Q ss_pred cccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc------C---ccchhhhhHh----
Q 007789 366 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------F---RSGAVEQLRT---- 432 (589)
Q Consensus 366 ~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt------~---RigaveQL~~---- 432 (589)
..+++++.|||+++.|+ .++|||.||+|||||.++|+|.+.|++|+|++++... | ++-+++|.+.
T Consensus 24 ~~~~AV~~vSFtL~~~Q--TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~N 101 (267)
T COG4167 24 QTVEAVKPVSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101 (267)
T ss_pred hhhhcccceEEEecCCc--EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccC
Confidence 34678899999999999 9999999999999999999999999999999998765 2 4777888652
Q ss_pred ----hhhccccceeccCCCCCH---HHHHHHHHHHhccc-CCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 433 ----HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-GSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 433 ----~~~~l~v~l~~~~~~~d~---~~ia~~al~~a~l~-~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
++..+..|+... ..-++ ...+.+.+..+++. +.....+.+ |-|++||++|||||. .+|.+|+. |
T Consensus 102 PRl~iGqiLd~PL~l~-T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALI-----L~P~iIIa-D 174 (267)
T COG4167 102 PRLRIGQILDFPLRLN-TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI-----LRPKIIIA-D 174 (267)
T ss_pred hhhhhhhHhcchhhhc-ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHh-----cCCcEEEe-h
Confidence 233444444221 22223 35566777777764 344455555 999999999999999 59999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
|++.+||..-+.+..| .+-++.+. .||+-|.++. +.|++--|. -.|..+-.|+-+
T Consensus 175 eAl~~LD~smrsQl~N-L~LeLQek---~GiSyiYV~Q------hlG~iKHi~----D~viVM~EG~vv 229 (267)
T COG4167 175 EALASLDMSMRSQLIN-LMLELQEK---QGISYIYVTQ------HIGMIKHIS----DQVLVMHEGEVV 229 (267)
T ss_pred hhhhhccHHHHHHHHH-HHHHHHHH---hCceEEEEec------hhhHhhhhc----ccEEEEecCcee
Confidence 9999999988776663 34455543 4898888765 344443332 245555555544
No 360
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.70 E-value=3.4e-17 Score=187.70 Aligned_cols=155 Identities=10% Similarity=-0.017 Sum_probs=110.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhh-----hhccccceec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~-----~~~l~v~l~~ 443 (589)
.+|++++|++++|+ +++|+|||||||||+++.|+|++++.+|+|.+.+. .++++++|...+ .+++..+...
T Consensus 466 ~il~~isl~i~~Ge--~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~--~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 466 VLIESLSFEVPSGN--HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK--GKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred eeeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC--CcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 48999999999999 99999999999999999999999999999987542 358888887532 2333222110
Q ss_pred cC--CCCCHHHHHHHHHHHhcccCCCccc----------cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 444 KG--YEKDPAIVAKEAIQEATRNGSDVVL----------VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 444 ~~--~~~d~~~ia~~al~~a~l~~~d~vl----------iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
.. ......+.+.++++.+++.++-... ...||||+||+.|||+|.. +|+++|| ||||++||+
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~-----~p~illL-DEpts~LD~ 615 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH-----KPQFAIL-DECTSAVSV 615 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCccCCCH
Confidence 00 0111123445667766654321111 2349999999999999995 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..... +.+.+.+ .+.+.|++|+
T Consensus 616 ~~~~~-l~~~l~~-------~~~tvI~isH 637 (659)
T TIGR00954 616 DVEGY-MYRLCRE-------FGITLFSVSH 637 (659)
T ss_pred HHHHH-HHHHHHH-------cCCEEEEEeC
Confidence 87643 3344432 2677888877
No 361
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.70 E-value=4.5e-17 Score=200.03 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=116.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh---------------------------------------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--------------------------------------- 409 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~--------------------------------------- 409 (589)
.+|++++|++++|+ .++|||++||||||+++.|++++.|
T Consensus 1182 ~vL~~lsl~i~~G~--~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKK--TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred ccccCeeEEEcCCC--EEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 48999999999999 9999999999999999999999998
Q ss_pred ---------------CCcEEEEcccccC---------ccchhhhhHhh-----hhccccceeccCCCCCHHHHHHHHHHH
Q 007789 410 ---------------HKVSVMMAACDTF---------RSGAVEQLRTH-----ARRLQVPIFEKGYEKDPAIVAKEAIQE 460 (589)
Q Consensus 410 ---------------~~GkV~l~~~Dt~---------RigaveQL~~~-----~~~l~v~l~~~~~~~d~~~ia~~al~~ 460 (589)
+.|+|+++|.|+. ++|+|.|...+ .+++. +... .... +.+.+|++.
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~--~g~~--~at~-eeI~~A~k~ 1334 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK--FGKE--DATR-EDVKRACKF 1334 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHh--cCCC--CCCH-HHHHHHHHH
Confidence 5899999999872 38999997644 33332 2111 1122 334555555
Q ss_pred hcc--------cCCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 461 ATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 461 a~l--------~~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
+++ .++|..+- ..||||+||++|||||.+ +|+++|| ||||++||+... +.+.+.|..+..
T Consensus 1335 A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr-----~p~ILLL-DEaTSaLD~~sE-~~I~~~L~~~~~- 1406 (1466)
T PTZ00265 1335 AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLR-----EPKILLL-DEATSSLDSNSE-KLIEKTIVDIKD- 1406 (1466)
T ss_pred cCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-eCcccccCHHHH-HHHHHHHHHHhc-
Confidence 543 24454443 249999999999999996 9999998 999999999875 444567766532
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
..+.|.|++|+
T Consensus 1407 --~~~~TvIiIaH 1417 (1466)
T PTZ00265 1407 --KADKTIITIAH 1417 (1466)
T ss_pred --cCCCEEEEEec
Confidence 12567888877
No 362
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=6.7e-17 Score=189.56 Aligned_cols=178 Identities=19% Similarity=0.202 Sum_probs=129.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc-
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l- 437 (589)
+.||+|++++++.|+ .++||||+||||||.+..|-.+|.|..|.|.|++.|+. .+|-|.|.+++...-
T Consensus 1003 ~~Il~~l~l~i~~Gq--TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TI 1080 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAGQ--TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTI 1080 (1228)
T ss_pred chhhcCCcEEecCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccH
Confidence 368999999999999 99999999999999999999999999999999999983 388888887653332
Q ss_pred --ccceeccCCCCCHHHHHHHHHHHhcc--------cCCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 438 --QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 438 --~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
++.+- .... +.+.+.+|.+.++. ++||-.+- ..||||+||++|||||.+ +|.++|| |
T Consensus 1081 rENI~YG--~~~v-s~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR-----nPkILLL-D 1151 (1228)
T KOG0055|consen 1081 RENIAYG--SEEV-SEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR-----NPKILLL-D 1151 (1228)
T ss_pred HHHHhcc--CCCC-CHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc-----CCCeeee-e
Confidence 22211 0111 23334455555543 34665554 349999999999999997 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
|+|+.||.... +..+++|..... +.|.|++.+== |... ----|+++-.|.-++
T Consensus 1152 EATSALDseSE-rvVQeALd~a~~-----gRT~IvIAHRL----------STIq-naD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1152 EATSALDSESE-RVVQEALDRAME-----GRTTIVIAHRL----------STIQ-NADVIAVLKNGKVVE 1204 (1228)
T ss_pred ccchhhhhhhH-HHHHHHHHHhhc-----CCcEEEEecch----------hhhh-cCCEEEEEECCEEEe
Confidence 99999999864 666777776654 56667766511 1111 123466777776553
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.69 E-value=4.7e-17 Score=199.44 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=118.9
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh---hCCcEEEEccccc---C--ccchhhhhHhhhhcc--
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDT---F--RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~---~~~GkV~l~~~Dt---~--RigaveQL~~~~~~l-- 437 (589)
..+|++|++.+.+|+ +++|+|||||||||||+.|+|++. +++|+|.++|.++ + ++|+++|...+...+
T Consensus 776 ~~iL~~vs~~i~~Ge--~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 776 RVILNNVDGWVKPGT--LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred cEeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCH
Confidence 358999999999999 999999999999999999999987 6789999999875 2 379999865433322
Q ss_pred ----ccceeccCC-CC---CHHHHHHHHHHHhcccCCCcccc-----ccCccccccHHHHHHHHhhhhhcCCC-EEEEEe
Q 007789 438 ----QVPIFEKGY-EK---DPAIVAKEAIQEATRNGSDVVLV-----DTAGRMQDNEPLMRALSKLIYLNNPD-LVLFVG 503 (589)
Q Consensus 438 ----~v~l~~~~~-~~---d~~~ia~~al~~a~l~~~d~vli-----DTSGg~qqr~~LaraL~kl~~~~~Pd-lILLVD 503 (589)
......+.. .. +..+.+.++++.+++.++....+ ..||||+||+.|+++|+. +|+ ++|| |
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~-----~P~~iLlL-D 927 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA-----KPKLLLFL-D 927 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc-----CCCeEEEE-c
Confidence 211111111 11 12345677888888876555455 369999999999999994 997 5555 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+|||+.... .+.+.|++++.. +.+.|++++
T Consensus 928 EPTsgLD~~~~~-~i~~~L~~la~~----g~tvI~t~H 960 (1394)
T TIGR00956 928 EPTSGLDSQTAW-SICKLMRKLADH----GQAILCTIH 960 (1394)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHHHc----CCEEEEEec
Confidence 999999998764 444778777653 455566555
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=4.6e-17 Score=184.78 Aligned_cols=189 Identities=20% Similarity=0.249 Sum_probs=139.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh---CCcEEEEccccc----C--ccchhhhhHhhhhccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ---HKVSVMMAACDT----F--RSGAVEQLRTHARRLQ 438 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~---~~GkV~l~~~Dt----~--RigaveQL~~~~~~l~ 438 (589)
..+|++|+....+|+ +.+|+||+||||||||++|||.... .+|+|+++|... + ..|+|.|.-.+...+.
T Consensus 43 k~iL~~vsg~~~~Ge--l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT 120 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGE--LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT 120 (613)
T ss_pred ceeeeCcEEEEecCe--EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence 468999999999999 9999999999999999999998864 589999999332 2 3899999876655554
Q ss_pred cc----eec--cC----CCCCHHHHHHHHHHHhcccCCCccccc------cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 439 VP----IFE--KG----YEKDPAIVAKEAIQEATRNGSDVVLVD------TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 439 v~----l~~--~~----~~~d~~~ia~~al~~a~l~~~d~vliD------TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
|. +.. +. .......++++.+..+++......+|. -|||+++|+.+|.+|. ++|.++++
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell-----~~P~iLfl- 194 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL-----TDPSILFL- 194 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH-----cCCCEEEe-
Confidence 32 111 11 123345778889999999888777775 5999999999999999 59999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccch-hhhhHhHHHhCCCEEEEecCCC
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKV-GAALSMVYVSGAPVMFVGCGQS 571 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~-G~als~~~~~g~PI~fig~Gq~ 571 (589)
||||+|||.....+.. +.|++++..+++ ||.|=..-. .++ +..-.+.....--++|.|..+.
T Consensus 195 DEPTSGLDS~sA~~vv-~~Lk~lA~~grt-----Vi~tIHQPs-s~lf~lFD~l~lLs~G~~vy~G~~~~ 257 (613)
T KOG0061|consen 195 DEPTSGLDSFSALQVV-QLLKRLARSGRT-----VICTIHQPS-SELFELFDKLLLLSEGEVVYSGSPRE 257 (613)
T ss_pred cCCCCCcchhhHHHHH-HHHHHHHhCCCE-----EEEEEeCCc-HHHHHHHhHhhhhcCCcEEEecCHHH
Confidence 9999999999876665 888888876543 333332222 222 2222223334457888886554
No 365
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.69 E-value=8.3e-17 Score=173.61 Aligned_cols=161 Identities=23% Similarity=0.256 Sum_probs=121.0
Q ss_pred CcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhH--
Q 007789 363 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLR-- 431 (589)
Q Consensus 363 ~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~-- 431 (589)
.|.....+|++|+|.+..|+ .++||||+|+|||||.+.|.|..+|..|.|.+++.|.+ ++||.+|.-
T Consensus 344 PPg~~~pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL 421 (580)
T COG4618 344 PPGQKKPILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL 421 (580)
T ss_pred CCCCCCcceecceeEecCCc--eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccccee
Confidence 35555689999999999999 99999999999999999999999999999999999984 388888854
Q ss_pred ---hhhhccccceeccCCCCCHHHHHHHH--------HHHhcccCCCcccccc----CccccccHHHHHHHHhhhhhcCC
Q 007789 432 ---THARRLQVPIFEKGYEKDPAIVAKEA--------IQEATRNGSDVVLVDT----AGRMQDNEPLMRALSKLIYLNNP 496 (589)
Q Consensus 432 ---~~~~~l~v~l~~~~~~~d~~~ia~~a--------l~~a~l~~~d~vliDT----SGg~qqr~~LaraL~kl~~~~~P 496 (589)
++++++ .-| ....|+..++..+ +-++ -.+||..+-+. ||||+||+.|+|+|- .+|
T Consensus 422 F~GTIaeNI--aRf--~~~~d~~kIieAA~lAgvHelIl~l-P~GYdT~iG~~G~~LSgGQRQRIaLARAlY-----G~P 491 (580)
T COG4618 422 FDGTIAENI--ARF--GEEADPEKVIEAARLAGVHELILRL-PQGYDTRIGEGGATLSGGQRQRIALARALY-----GDP 491 (580)
T ss_pred cCCcHHHHH--Hhc--cccCCHHHHHHHHHHcChHHHHHhC-cCCccCccCCCCCCCCchHHHHHHHHHHHc-----CCC
Confidence 233332 111 1133444443322 2211 24688777654 999999999999999 499
Q ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 497 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 497 dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+++| |||-++||.... ....++|..+.. ++.+.|++|+
T Consensus 492 ~lvVL-DEPNsNLD~~GE-~AL~~Ai~~~k~----rG~~vvviaH 530 (580)
T COG4618 492 FLVVL-DEPNSNLDSEGE-AALAAAILAAKA----RGGTVVVIAH 530 (580)
T ss_pred cEEEe-cCCCCCcchhHH-HHHHHHHHHHHH----cCCEEEEEec
Confidence 99998 999999998865 334466665554 4777888776
No 366
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.69 E-value=5.7e-17 Score=199.17 Aligned_cols=161 Identities=17% Similarity=0.279 Sum_probs=114.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc-cccc-------C--ccchhhhhHhh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA-ACDT-------F--RSGAVEQLRTH----- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~-~~Dt-------~--RigaveQL~~~----- 433 (589)
.+|++++|.+++|+ +++|||||||||||+++.|+|++.|+.|+|.+. +.|+ + ++|+|.|...+
T Consensus 399 ~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI 476 (1466)
T PTZ00265 399 EIYKDLNFTLTEGK--TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSI 476 (1466)
T ss_pred ceeccceEEEcCCC--EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccH
Confidence 48999999999999 999999999999999999999999999999994 4554 1 38889886533
Q ss_pred hhccccceec-cC-------C--------------------------------------------CCCHHHHHHHHHHHh
Q 007789 434 ARRLQVPIFE-KG-------Y--------------------------------------------EKDPAIVAKEAIQEA 461 (589)
Q Consensus 434 ~~~l~v~l~~-~~-------~--------------------------------------------~~d~~~ia~~al~~a 461 (589)
.+++.+..+. .. + .....+.+.++++.+
T Consensus 477 ~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~ 556 (1466)
T PTZ00265 477 KNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKV 556 (1466)
T ss_pred HHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHh
Confidence 3333221110 00 0 000112344555555
Q ss_pred cccC--------CC----ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 462 TRNG--------SD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 462 ~l~~--------~d----~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
++.+ ++ ......||||+||++|||+|.+ +|+++|| ||||++||+.... .+.+.|..+...
T Consensus 557 ~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~-----~P~ILlL-DEpTSaLD~~se~-~i~~~L~~~~~~- 628 (1466)
T PTZ00265 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIR-----NPKILIL-DEATSSLDNKSEY-LVQKTINNLKGN- 628 (1466)
T ss_pred CcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-eCcccccCHHHHH-HHHHHHHHHhhc-
Confidence 4322 22 2223459999999999999995 9999998 9999999998764 444777766431
Q ss_pred CCCCccEEEEcc
Q 007789 530 NPQLIDGILLTK 541 (589)
Q Consensus 530 ~~~~it~IIlTK 541 (589)
.+.+.|++|+
T Consensus 629 --~g~TvIiIsH 638 (1466)
T PTZ00265 629 --ENRITIIIAH 638 (1466)
T ss_pred --CCCEEEEEeC
Confidence 2567788876
No 367
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.68 E-value=2.6e-16 Score=165.78 Aligned_cols=183 Identities=18% Similarity=0.186 Sum_probs=135.7
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHh--h
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~--~ 433 (589)
+.++++|++++..|+ .++|||.+||||||+-..|.+++.+. |+|.+.|.|+. |+-.|+|.+. +
T Consensus 300 ~~AVd~isl~L~~gq--TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTLRRGQ--TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEecCCC--eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 568899999999999 99999999999999999999999876 99999999872 3566666552 2
Q ss_pred hhcccc--------ceecc-CCCCCHHHHHHHHHHHhcccCC--CccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 434 ARRLQV--------PIFEK-GYEKDPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 434 ~~~l~v--------~l~~~-~~~~d~~~ia~~al~~a~l~~~--d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
..++.| .+... ....+....+.+++..+++..- ..++-.-|||++||++|||+|. .+|.+|+|
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAli-----LkP~~i~L- 450 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI-----LKPELILL- 450 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHh-----cCCcEEEe-
Confidence 333322 22221 1122233556667777776532 3455666999999999999999 59999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||||+.||..-|++.. +.|+++... .+++-++|++ |.. ++-+++ --|..+-.|+-|+
T Consensus 451 DEPTSALD~SVQaQvv-~LLr~LQ~k---~~LsYLFISH-DL~-----VvrAl~----~~viVm~~GkiVE 507 (534)
T COG4172 451 DEPTSALDRSVQAQVL-DLLRDLQQK---HGLSYLFISH-DLA-----VVRALC----HRVIVMRDGKIVE 507 (534)
T ss_pred cCCchHhhHHHHHHHH-HHHHHHHHH---hCCeEEEEec-cHH-----HHHHhh----ceEEEEeCCEEee
Confidence 9999999999888766 777777654 4899999987 542 233333 3577777777764
No 368
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-16 Score=173.68 Aligned_cols=180 Identities=18% Similarity=0.166 Sum_probs=123.7
Q ss_pred cccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc---------cchhhhhH---
Q 007789 364 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLR--- 431 (589)
Q Consensus 364 p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R---------igaveQL~--- 431 (589)
|.++..+|++++|.+.+|+ -|+|+|++||||||++..|+|.+.|++|+|.++|.++.. ++.+.|-.
T Consensus 347 ~~~~~~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF 424 (573)
T COG4987 347 PGQQTKALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424 (573)
T ss_pred CCCccchhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH
Confidence 3444579999999999999 999999999999999999999999999999999988742 34444433
Q ss_pred --hhhhccccceeccCCCCCHHHHHHHHHHHhcccC--------CCcccccc----CccccccHHHHHHHHhhhhhcCCC
Q 007789 432 --THARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--------SDVVLVDT----AGRMQDNEPLMRALSKLIYLNNPD 497 (589)
Q Consensus 432 --~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~--------~d~vliDT----SGg~qqr~~LaraL~kl~~~~~Pd 497 (589)
++.+|+... . ....+ +...++++.+++.+ ++..+-+. |||++||.+|+|+|.+ +.+
T Consensus 425 ~~Tlr~NL~lA---~-~~AsD-Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~-----dap 494 (573)
T COG4987 425 SGTLRDNLRLA---N-PDASD-EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH-----DAP 494 (573)
T ss_pred HHHHHHHHhhc---C-CCCCH-HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc-----CCC
Confidence 223333221 1 11112 23345666655433 22233332 9999999999999995 888
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 498 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 498 lILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
++|| ||||.|||+....+.+ +.+.+.. .+.|.+++|+- .+. . ..--.|.++-.|+.++
T Consensus 495 l~lL-DEPTegLD~~TE~~vL-~ll~~~~-----~~kTll~vTHr-L~~---------l-e~~drIivl~~Gkiie 552 (573)
T COG4987 495 LWLL-DEPTEGLDPITERQVL-ALLFEHA-----EGKTLLMVTHR-LRG---------L-ERMDRIIVLDNGKIIE 552 (573)
T ss_pred eEEe-cCCcccCChhhHHHHH-HHHHHHh-----cCCeEEEEecc-ccc---------H-hhcCEEEEEECCeeee
Confidence 8888 9999999999876544 3332222 26788888872 221 0 1122577888887664
No 369
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=157.06 Aligned_cols=184 Identities=17% Similarity=0.169 Sum_probs=122.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc---------cchhhhhH--------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLR-------- 431 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R---------igaveQL~-------- 431 (589)
.+|+++++++..|+ ++.++|.|||||||+++.|||.+.|++|+|.|.+.|+.+ ++-|+|.+
T Consensus 20 ~~l~~~sL~I~~g~--FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 20 RALNGLSLEIAEGD--FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHhcCceeecCCc--eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 58999999999999 999999999999999999999999999999999999854 55667755
Q ss_pred hhhhcccccee---ccCCCC--C--HHHHHHHHHHHhc--ccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 432 THARRLQVPIF---EKGYEK--D--PAIVAKEAIQEAT--RNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 432 ~~~~~l~v~l~---~~~~~~--d--~~~ia~~al~~a~--l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
++.+++-+.-. .++++. . ......+-++.++ +.+.-.-.++. |||++|-+.|+.+... .|+++||
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~-----~pkiLLL 172 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH-----PPKILLL 172 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcC-----CCcEEEe
Confidence 23333322111 011211 1 1122223333332 22333344565 9999999999888873 6666666
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCccc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 574 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~D 574 (589)
||-|++|||....-.+ +.-..+.+ ...+|.+++|+-=+-.-+ +|....-+-.|+-+-|
T Consensus 173 -DEHTAALDPkta~~vm-~lT~kiV~---~~klTtlMVTHnm~~Al~----------yG~RlImLh~G~IvlD 230 (263)
T COG1101 173 -DEHTAALDPKTAEFVM-ELTAKIVE---EHKLTTLMVTHNMEDALD----------YGNRLIMLHSGKIVLD 230 (263)
T ss_pred -cchhhcCCcchHHHHH-HHHHHHHH---hcCCceEEEeccHHHHHh----------hCCeEEEEeCCeEEEE
Confidence 9999999998754333 44444444 348999999985442223 3555555555555533
No 370
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.68 E-value=3.5e-17 Score=192.82 Aligned_cols=175 Identities=15% Similarity=0.198 Sum_probs=135.0
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc----------cchhhhhHhhhhcc--
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----------SGAVEQLRTHARRL-- 437 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R----------igaveQL~~~~~~l-- 437 (589)
+++++++.+++|+ ++++.|||||||||++++|+|..+|++|++.+.|.|.-. +|+-+|--.+.+.+
T Consensus 580 Av~~ls~~V~~ge--cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGE--CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCc--eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 7899999999999 999999999999999999999999999999998887631 88888876554444
Q ss_pred --ccceecc--C-CCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 438 --QVPIFEK--G-YEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 438 --~v~l~~~--~-~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
.+.+|.+ + ...|....+...++.+++..+....+.+ |||++++..++.+|. .+|.+|+| |||++|+||
T Consensus 658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali-----g~p~vi~L-DEPstGmDP 731 (885)
T KOG0059|consen 658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI-----GDPSVILL-DEPSTGLDP 731 (885)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHh-----cCCCEEEe-cCCCCCCCH
Confidence 2223332 3 2346667788888989998888888888 999999999999999 49999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhh
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAAL 553 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~al 553 (589)
..+ +..+.++..+.+.++...+|.|-.+.++-.+++.|.++
T Consensus 732 ~ar-r~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv 772 (885)
T KOG0059|consen 732 KAR-RHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMV 772 (885)
T ss_pred HHH-HHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheee
Confidence 876 56668888887754332333333333444444444443
No 371
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.5e-16 Score=157.52 Aligned_cols=165 Identities=17% Similarity=0.153 Sum_probs=116.3
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHh--HhhCCcEEEEcccccC--------c--cchhhhhHhhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF--------R--SGAVEQLRTHAR 435 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl--l~~~~GkV~l~~~Dt~--------R--igaveQL~~~~~ 435 (589)
.+||++|++++..|+ +.+|.||||||||||...|+|. |..++|+|++.|.|+. | +...+|-+.-.+
T Consensus 17 keILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~ 94 (251)
T COG0396 17 KEILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP 94 (251)
T ss_pred hhhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC
Confidence 368999999999999 9999999999999999999994 4778999999999983 2 222334332111
Q ss_pred ccccceec-----cCCC-----CCHHHHHHHHHHHhcccC-CCcccccc--CccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 436 RLQVPIFE-----KGYE-----KDPAIVAKEAIQEATRNG-SDVVLVDT--AGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 436 ~l~v~l~~-----~~~~-----~d~~~ia~~al~~a~l~~-~d~vliDT--SGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
-+.+..|. ...+ .+....++++++.+++.. +..+-++. |||++.|..|.+.+. .+|++++|
T Consensus 95 GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~-----lePkl~IL- 168 (251)
T COG0396 95 GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL-----LEPKLAIL- 168 (251)
T ss_pred CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh-----cCCCEEEe-
Confidence 11111110 0011 123345566666666654 33344443 999999999999888 59999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
|||-+|||..+ .+...+.+..+.+. +...+|+|+...+
T Consensus 169 DE~DSGLDIda-lk~V~~~i~~lr~~----~~~~liITHy~rl 206 (251)
T COG0396 169 DEPDSGLDIDA-LKIVAEGINALREE----GRGVLIITHYQRL 206 (251)
T ss_pred cCCCcCccHHH-HHHHHHHHHHHhcC----CCeEEEEecHHHH
Confidence 99999999875 44555666666554 7778999986654
No 372
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.67 E-value=1.5e-16 Score=195.07 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=118.8
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH----hhCCcEEEEccccc------Cc--cchhhhhHhhh
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL----LQHKVSVMMAACDT------FR--SGAVEQLRTHA 434 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll----~~~~GkV~l~~~Dt------~R--igaveQL~~~~ 434 (589)
...+|+++++.+++|+ +++|+|||||||||||+.|+|.+ .+..|+|.+.|.+. +| ++++.|...+.
T Consensus 73 ~~~iL~~vs~~i~~Ge--~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGE--LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred cceeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 3568999999999999 99999999999999999999986 46899999998764 33 78999876554
Q ss_pred hcccc------ceeccCC-----CCCHH----HHHHHHHHHhcccCCCccc------cccCccccccHHHHHHHHhhhhh
Q 007789 435 RRLQV------PIFEKGY-----EKDPA----IVAKEAIQEATRNGSDVVL------VDTAGRMQDNEPLMRALSKLIYL 493 (589)
Q Consensus 435 ~~l~v------~l~~~~~-----~~d~~----~ia~~al~~a~l~~~d~vl------iDTSGg~qqr~~LaraL~kl~~~ 493 (589)
..+.+ ....+.. +.... .++..+++.+++.+..... -..||||+||+.|+++|+.
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~---- 226 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG---- 226 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh----
Confidence 44322 1111100 11111 2234567777776653322 2359999999999999995
Q ss_pred cCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 494 NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 494 ~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|+++++ ||||+|||+..+... .+.|+.+++.. +.+.|++++
T Consensus 227 -~p~vlll-DEPTsgLD~~~~~~i-~~~L~~la~~~---g~tvii~~H 268 (1394)
T TIGR00956 227 -GAKIQCW-DNATRGLDSATALEF-IRALKTSANIL---DTTPLVAIY 268 (1394)
T ss_pred -CCCEEEE-eCCCCCcCHHHHHHH-HHHHHHHHHhc---CCEEEEEec
Confidence 9998888 999999999987544 47888877532 556566554
No 373
>PLN03140 ABC transporter G family member; Provisional
Probab=99.67 E-value=8.4e-17 Score=197.22 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=119.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh--CCcEEEEccccc----C--ccchhhhhHhhhhcc--
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDT----F--RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~--~~GkV~l~~~Dt----~--RigaveQL~~~~~~l-- 437 (589)
..+|++|++.+.+|+ +++|+|||||||||||+.|+|...+ ..|+|.+.|.+. + ++|+++|...+...+
T Consensus 893 ~~iL~~vs~~i~~Ge--l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 893 LQLLREVTGAFRPGV--LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred ceEeeCcEEEEECCe--EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 368999999999999 9999999999999999999998753 579999998664 2 279999975443333
Q ss_pred ----ccceeccCC-CCC---HHHHHHHHHHHhcccCCCcccc------ccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 438 ----QVPIFEKGY-EKD---PAIVAKEAIQEATRNGSDVVLV------DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 438 ----~v~l~~~~~-~~d---~~~ia~~al~~a~l~~~d~vli------DTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
......+.. ..+ ....+.++++.+++.++....+ ..||||+||+.|+++|+. +|+++|| |
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~-----~P~lL~L-D 1044 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA-----NPSIIFM-D 1044 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh-----CCCEEEE-e
Confidence 211111111 111 2234677888888776544443 359999999999999994 9999887 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|||+|||+..+. .+.+.|+.+++. +.++|++++
T Consensus 1045 EPTsgLD~~~a~-~v~~~L~~l~~~----g~tVI~t~H 1077 (1470)
T PLN03140 1045 EPTSGLDARAAA-IVMRTVRNTVDT----GRTVVCTIH 1077 (1470)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 999999999865 444788877654 456566655
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.67 E-value=9.4e-17 Score=178.68 Aligned_cols=154 Identities=24% Similarity=0.172 Sum_probs=108.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccc--------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP-------- 440 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~-------- 440 (589)
.+|.++++.+.+|+ .|+|||+||+||||||++|+|.+.|+.|+|.+... .|+|++.|.........+-
T Consensus 17 ~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--~~v~~l~Q~~~~~~~~tv~~~v~~~~~ 92 (530)
T COG0488 17 PLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--LRVGYLSQEPPLDPEKTVLDYVIEGFG 92 (530)
T ss_pred eeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--ceEEEeCCCCCcCCCccHHHHHHhhhH
Confidence 57899999999999 99999999999999999999999999999987653 5788888865433221000
Q ss_pred -e----------------------------eccCCCCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhh
Q 007789 441 -I----------------------------FEKGYEKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKL 490 (589)
Q Consensus 441 -l----------------------------~~~~~~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl 490 (589)
+ +....+-+....+..++.-++.... ...+. .|||++.|+.||++|..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~- 170 (530)
T COG0488 93 ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLE- 170 (530)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhc-
Confidence 0 0000001112334445554555444 34454 49999999999999994
Q ss_pred hhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 491 IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 491 ~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+||++|| ||||+.||.... .-|.++...+ .+ +.||||+
T Consensus 171 ----~pDlLLL-DEPTNHLD~~~i-----~WLe~~L~~~--~g-tviiVSH 208 (530)
T COG0488 171 ----EPDLLLL-DEPTNHLDLESI-----EWLEDYLKRY--PG-TVIVVSH 208 (530)
T ss_pred ----CCCEEEE-cCCCcccCHHHH-----HHHHHHHHhC--CC-cEEEEeC
Confidence 9999998 999999998764 2233333222 25 7888887
No 375
>PLN03232 ABC transporter C family member; Provisional
Probab=99.67 E-value=1.2e-16 Score=197.40 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=124.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+|+++++++|+ .++|||++||||||+++.|.+++.|++|+|.|+|.|+. ++++|+|...+ .
T Consensus 1250 ~vL~~isl~I~~Ge--kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232 1250 PVLHGLSFFVSPSE--KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred cccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHH
Confidence 48999999999999 99999999999999999999999999999999999973 47888887643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. .+. ..+. +.+.++++.+++ .+++..+- ..||||+|+++|||||.+ +|+++||
T Consensus 1328 ~NL~--~~~---~~sd-eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr-----~~~ILIL- 1395 (1495)
T PLN03232 1328 FNID--PFS---EHND-ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR-----RSKILVL- 1395 (1495)
T ss_pred HHcC--CCC---CCCH-HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh-----CCCEEEE-
Confidence 3332 221 1122 334556665543 24454432 249999999999999996 9999988
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||||+++|+... +.+.+.|..... +.|.|++++ +.++ .. ---|..+..|+-+
T Consensus 1396 DEATSaLD~~Te-~~Iq~~L~~~~~-----~~TvI~IAHRl~ti-----------~~-~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1396 DEATASVDVRTD-SLIQRTIREEFK-----SCTMLVIAHRLNTI-----------ID-CDKILVLSSGQVL 1448 (1495)
T ss_pred ECCcccCCHHHH-HHHHHHHHHHcC-----CCEEEEEeCCHHHH-----------Hh-CCEEEEEECCEEE
Confidence 999999999865 455566654432 567777766 2222 11 2356666666655
No 376
>PLN03130 ABC transporter C family member; Provisional
Probab=99.67 E-value=1.4e-16 Score=197.34 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=116.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++++|++++|+ .|+|||++||||||+++.|.+++.|++|+|.|+|.|+. ++++|+|...+ .
T Consensus 1253 ~VL~~is~~I~~Ge--kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130 1253 PVLHGLSFEISPSE--KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred ceecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence 38999999999999 99999999999999999999999999999999999973 48888887643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. .+. ..++ +.+.++++.+++ .++|..+- ..||||+|+++|||||.+ +|++++|
T Consensus 1331 eNLd--~~~---~~td-eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr-----~p~ILIL- 1398 (1622)
T PLN03130 1331 FNLD--PFN---EHND-ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR-----RSKILVL- 1398 (1622)
T ss_pred HHhC--cCC---CCCH-HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 3332 221 1122 334556665543 24554443 249999999999999996 9999888
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+++|.... +.+.+.|..... +.|.|++++
T Consensus 1399 DEATSaLD~~Te-~~Iq~~I~~~~~-----~~TvI~IAH 1431 (1622)
T PLN03130 1399 DEATAAVDVRTD-ALIQKTIREEFK-----SCTMLIIAH 1431 (1622)
T ss_pred ECCCCCCCHHHH-HHHHHHHHHHCC-----CCEEEEEeC
Confidence 999999999875 455566665432 456777666
No 377
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.66 E-value=1.9e-16 Score=195.87 Aligned_cols=173 Identities=15% Similarity=0.102 Sum_probs=126.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++|+|++++|+ .|+|||++||||||+++.|.+++.|++|+|.|+|.|+. ++++++|...+ .
T Consensus 1300 ~vL~~is~~I~~Ge--kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957 1300 LVLRHINVTIHGGE--KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred ccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHH
Confidence 48999999999999 99999999999999999999999999999999999973 48888887643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. .+. ..+. +.+.++++.+++ .++|..+-+ .||||+|+++|||+|.+ +|+++||
T Consensus 1378 ~NLd--p~~---~~sd-eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr-----~~~ILiL- 1445 (1522)
T TIGR00957 1378 MNLD--PFS---QYSD-EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR-----KTKILVL- 1445 (1522)
T ss_pred HHcC--ccc---CCCH-HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 3332 121 1222 334556666544 345655543 39999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||||+++|+... ..+.+.|+.... +.|.|++++ ++++ .. ---|..+..|+-++
T Consensus 1446 DEaTSalD~~Te-~~Iq~~l~~~~~-----~~TvI~IAHRl~ti-----------~~-~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1446 DEATAAVDLETD-NLIQSTIRTQFE-----DCTVLTIAHRLNTI-----------MD-YTRVIVLDKGEVAE 1499 (1522)
T ss_pred ECCcccCCHHHH-HHHHHHHHHHcC-----CCEEEEEecCHHHH-----------Hh-CCEEEEEECCEEEE
Confidence 999999999875 445566654432 456777766 2222 11 23567777777653
No 378
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.4e-16 Score=149.65 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=112.1
Q ss_pred cccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-----------------Cccch
Q 007789 364 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------------FRSGA 426 (589)
Q Consensus 364 p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-----------------~Riga 426 (589)
.+..+.+|++++|++..|+ ++++-||+|+||||+|++|-+-|.|++|+|.+.-.+- ..+||
T Consensus 20 ~Gi~LpV~~~vslsV~aGE--CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGy 97 (235)
T COG4778 20 GGVRLPVLRNVSLSVNAGE--CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGY 97 (235)
T ss_pred CCEEeeeeeceeEEecCcc--EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHH
Confidence 3444689999999999999 9999999999999999999999999999999864332 12899
Q ss_pred hhhhHhhhhcc------ccceeccCCCCC-HHHHHHHHHHHhcccCCC-cccccc-CccccccHHHHHHHHhhhhhcCCC
Q 007789 427 VEQLRTHARRL------QVPIFEKGYEKD-PAIVAKEAIQEATRNGSD-VVLVDT-AGRMQDNEPLMRALSKLIYLNNPD 497 (589)
Q Consensus 427 veQL~~~~~~l------~v~l~~~~~~~d-~~~ia~~al~~a~l~~~d-~vliDT-SGg~qqr~~LaraL~kl~~~~~Pd 497 (589)
|.|.-....++ .-|+...+...+ ....+.+.+.++++.... .....| |||+|||++|+|.+. .+-+
T Consensus 98 VSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfi-----vd~p 172 (235)
T COG4778 98 VSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFI-----VDYP 172 (235)
T ss_pred HHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhh-----ccCc
Confidence 99854433333 223444444433 345667777777665422 233445 999999999999998 3666
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHh
Q 007789 498 LVLFVGEALVGNDAVDQLSKFNQKLADL 525 (589)
Q Consensus 498 lILLVDEPt~GlD~~~q~~~f~~~l~~l 525 (589)
++|| ||||+.||+.+..... +.|.+-
T Consensus 173 ILLL-DEPTasLDa~Nr~vVv-eli~e~ 198 (235)
T COG4778 173 ILLL-DEPTASLDATNRAVVV-ELIREA 198 (235)
T ss_pred eEEe-cCCcccccccchHHHH-HHHHHH
Confidence 6666 9999999999875444 444433
No 379
>PLN03140 ABC transporter G family member; Provisional
Probab=99.65 E-value=2.6e-16 Score=192.87 Aligned_cols=163 Identities=12% Similarity=0.126 Sum_probs=118.9
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC---CcEEEEccccc------CccchhhhhHhhhhcc
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDT------FRSGAVEQLRTHARRL 437 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~---~GkV~l~~~Dt------~RigaveQL~~~~~~l 437 (589)
...+|+++++.+++|+ +++|+|||||||||||+.|+|.+.++ .|+|.++|.+. .+++++.|...|...+
T Consensus 177 ~~~IL~~vs~~i~~Ge--~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSR--MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCe--EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcC
Confidence 4679999999999999 99999999999999999999999988 89999999765 2389999976444333
Q ss_pred cc------ceeccCCC-----------C--------CH----------------HHHHHHHHHHhcccCCCc------cc
Q 007789 438 QV------PIFEKGYE-----------K--------DP----------------AIVAKEAIQEATRNGSDV------VL 470 (589)
Q Consensus 438 ~v------~l~~~~~~-----------~--------d~----------------~~ia~~al~~a~l~~~d~------vl 470 (589)
.+ .....+.+ . +. ..++..+++.+++.++.. .+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 21 11001000 0 00 012355777777765432 22
Q ss_pred cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 471 VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 471 iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
-..||||+||+.|+++|.. +|+++++ ||||+|||+....+.. +.|+.++... +.+.++.+.
T Consensus 335 rglSGGerkRVsia~aL~~-----~p~vlll-DEPTsGLDs~t~~~i~-~~Lr~la~~~---g~Tviis~H 395 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVG-----PTKTLFM-DEISTGLDSSTTYQIV-KCLQQIVHLT---EATVLMSLL 395 (1470)
T ss_pred cCCCcccceeeeehhhhcC-----CCcEEEE-eCCCcCccHHHHHHHH-HHHHHHHHhc---CCEEEEEec
Confidence 2459999999999999994 8988888 9999999999875444 7777776432 566666665
No 380
>PTZ00243 ABC transporter; Provisional
Probab=99.64 E-value=4.6e-16 Score=192.42 Aligned_cols=152 Identities=19% Similarity=0.146 Sum_probs=114.4
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----hh
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----AR 435 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~~ 435 (589)
+|++|+|++++|+ .|+|||++||||||+++.|.+++.|++|+|.|+|.|+. ++++|+|...+ .+
T Consensus 1325 vL~~vsf~I~~Ge--kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIre 1402 (1560)
T PTZ00243 1325 VLRGVSFRIAPRE--KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ 1402 (1560)
T ss_pred eeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHH
Confidence 8999999999999 99999999999999999999999999999999999973 37888887643 33
Q ss_pred ccccceeccCCCCCHHHHHHHHHHHhccc--------CCCccccc----cCccccccHHHHHHHHhhhhhcC-CCEEEEE
Q 007789 436 RLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVLVD----TAGRMQDNEPLMRALSKLIYLNN-PDLVLFV 502 (589)
Q Consensus 436 ~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~-PdlILLV 502 (589)
++. .+. ..++ +.+.++++.+++. ++|..+-+ .||||+|+++|||+|.+ + |+++||
T Consensus 1403 NId--p~~---~~sd-eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~-----~~~~ILlL- 1470 (1560)
T PTZ00243 1403 NVD--PFL---EASS-AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK-----KGSGFILM- 1470 (1560)
T ss_pred HhC--ccc---CCCH-HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc-----CCCCEEEE-
Confidence 332 221 1122 3345666665542 34544433 49999999999999995 5 788887
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+++|+.... .+.+.|..... +.|.|++++
T Consensus 1471 DEATSaLD~~te~-~Iq~~L~~~~~-----~~TvI~IAH 1503 (1560)
T PTZ00243 1471 DEATANIDPALDR-QIQATVMSAFS-----AYTVITIAH 1503 (1560)
T ss_pred eCCCccCCHHHHH-HHHHHHHHHCC-----CCEEEEEec
Confidence 9999999998753 44466654422 567777776
No 381
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.64 E-value=8.8e-16 Score=153.90 Aligned_cols=156 Identities=15% Similarity=0.080 Sum_probs=93.6
Q ss_pred cccccccccccccccccCCceEEEEEecCCCcHHHHH-HHHHHhH--------------------hhCCcEE-------E
Q 007789 364 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL-AKVAYWL--------------------LQHKVSV-------M 415 (589)
Q Consensus 364 p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlL-akLAgll--------------------~~~~GkV-------~ 415 (589)
+...+.+|++|+|++++|+ +++|+|+||||||||+ ..|...- .|..+++ .
T Consensus 4 ~~~~~~~l~~vsl~i~~Ge--~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 4 RGAREHNLKNVDVDIPRNK--LVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred ccchhhccccceeecCCCc--EEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 3445678999999999999 9999999999999996 3333100 0000000 0
Q ss_pred Eccccc-----CccchhhhhHhhhhccccceeccCCCC-CHHHHHHHHHHHhcccC--CCccccccCccccccHHHHHHH
Q 007789 416 MAACDT-----FRSGAVEQLRTHARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRAL 487 (589)
Q Consensus 416 l~~~Dt-----~RigaveQL~~~~~~l~v~l~~~~~~~-d~~~ia~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL 487 (589)
+..... .+++.+.|...+. ...+.. +.... .+.++.+++.. .+..+...||||+|++.|+++|
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYL--------RLLFARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHH--------HHHhhhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHH
Confidence 000000 0011111111000 001111 12222 45667666653 3445556699999999999999
Q ss_pred HhhhhhcCC--CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 488 SKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 488 ~kl~~~~~P--dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+. +| +++|| ||||+|+|+..+.. +.+.|..+... +.+.|++|+
T Consensus 153 ~~-----~p~~~llll-DEPt~gLD~~~~~~-l~~~l~~~~~~----g~tii~itH 197 (226)
T cd03270 153 GS-----GLTGVLYVL-DEPSIGLHPRDNDR-LIETLKRLRDL----GNTVLVVEH 197 (226)
T ss_pred Hh-----CCCCCEEEE-eCCccCCCHHHHHH-HHHHHHHHHhC----CCEEEEEEe
Confidence 95 77 47776 99999999998654 44667766532 667788777
No 382
>PLN03073 ABC transporter F family; Provisional
Probab=99.64 E-value=5.3e-16 Score=178.97 Aligned_cols=156 Identities=21% Similarity=0.194 Sum_probs=100.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH---hhCCcEEEEcccccC----------------c------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL---LQHKVSVMMAACDTF----------------R------ 423 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll---~~~~GkV~l~~~Dt~----------------R------ 423 (589)
.+|++++|++..|+ +++|||+|||||||||++|+|.. .|.+|+|.+...+.. +
T Consensus 191 ~ll~~isl~i~~Ge--~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~ 268 (718)
T PLN03073 191 DLIVDASVTLAFGR--HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEE 268 (718)
T ss_pred EEEECCEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 38999999999999 99999999999999999999853 578899987654321 0
Q ss_pred -cchhhhhHhhhh-----ccccceeccCCCC--------------------CHHHHHHHHHHHhccc-CCCccccc-cCc
Q 007789 424 -SGAVEQLRTHAR-----RLQVPIFEKGYEK--------------------DPAIVAKEAIQEATRN-GSDVVLVD-TAG 475 (589)
Q Consensus 424 -igaveQL~~~~~-----~l~v~l~~~~~~~--------------------d~~~ia~~al~~a~l~-~~d~vliD-TSG 475 (589)
+++++|...... ....+.. .+... .....+..++..+++. ......+. .||
T Consensus 269 ~~~~~~q~~~l~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSg 347 (718)
T PLN03073 269 EAQLVAQQRELEFETETGKGKGANK-DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSG 347 (718)
T ss_pred HHHHHHHHHHhhhcccccccccccc-cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCH
Confidence 222333221100 0000000 00011 1122333444444442 11223344 499
Q ss_pred cccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 476 RMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 476 g~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+++|+.|+++|.. +|+++|| ||||++||+.... .+.+.|..+ +.+.||+|+
T Consensus 348 G~k~rv~LA~aL~~-----~p~lLlL-DEPt~~LD~~~~~-~l~~~L~~~-------~~tviivsH 399 (718)
T PLN03073 348 GWRMRIALARALFI-----EPDLLLL-DEPTNHLDLHAVL-WLETYLLKW-------PKTFIVVSH 399 (718)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEE-ECCCCCCCHHHHH-HHHHHHHHc-------CCEEEEEEC
Confidence 99999999999994 9999998 9999999999764 333555433 456777776
No 383
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=1.8e-16 Score=153.39 Aligned_cols=181 Identities=17% Similarity=0.205 Sum_probs=131.7
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcc-cccCc----------cchhhhhHhhhhc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA-CDTFR----------SGAVEQLRTHARR 436 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~-~Dt~R----------igaveQL~~~~~~ 436 (589)
..+|+++||.+..|+ .-+||||||+||||++-.|+|..+|+.|+|++.+ .|+.+ +|--+|-++..+.
T Consensus 18 F~Aln~ls~~v~~Ge--lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ 95 (249)
T COG4674 18 FKALNDLSFSVDPGE--LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN 95 (249)
T ss_pred eeeeeeeEEEecCCe--EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh
Confidence 468999999999999 9999999999999999999999999999999998 77632 5666776655444
Q ss_pred ccc------c------eec---cCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 437 LQV------P------IFE---KGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 437 l~v------~------l~~---~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
+.| . ++. .....+.+..+.++++..++.+...++..+ |.|++|..+|..-|++ +|+++|
T Consensus 96 ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q-----~P~lLL 170 (249)
T COG4674 96 LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQ-----DPKLLL 170 (249)
T ss_pred ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeecc-----CCcEEE
Confidence 421 1 111 122334556788899988888777777777 9999999999998886 899888
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
+ |||++|+-....... -+.|..++.. -+.+++ ..| .|.+-. ...+|..+..|+-.
T Consensus 171 l-DEPvAGMTd~Et~~t-aeLl~~la~~-----hsilVV-EHD-----M~Fvr~----~A~~VTVlh~G~VL 225 (249)
T COG4674 171 L-DEPVAGMTDAETEKT-AELLKSLAGK-----HSILVV-EHD-----MGFVRE----IADKVTVLHEGSVL 225 (249)
T ss_pred e-cCccCCCcHHHHHHH-HHHHHHHhcC-----ceEEEE-ecc-----HHHHHH----hhheeEEEecccee
Confidence 7 999999976654333 3666666642 233443 334 233333 34567777777665
No 384
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.1e-15 Score=163.83 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=110.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL-- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l-- 437 (589)
.+|+||||.+.+|+ ++++|||+|+||||.++.|-.++.-++|.|.|+|+|+. .+|.|+|..++.+.-
T Consensus 552 ~vl~disF~v~pGk--tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~ 629 (790)
T KOG0056|consen 552 PVLSDISFTVQPGK--TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTIL 629 (790)
T ss_pred ceeecceEEecCCc--EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceee
Confidence 68999999999999 99999999999999999999999999999999999983 389999987765543
Q ss_pred -ccceeccCCCCCHHHHHHHHHHHhcc--------cCCCcc----ccccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 438 -QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 438 -~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~v----liDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
++.+-....+.+. +.+|.+.+.+ .++... =...|||++||+++||++.| .|.+||| ||
T Consensus 630 yNIryak~~Asnee---vyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK-----~P~iIlL-DE 700 (790)
T KOG0056|consen 630 YNIRYAKPSASNEE---VYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK-----APSIILL-DE 700 (790)
T ss_pred eheeecCCCCChHH---HHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc-----CCcEEEE-cc
Confidence 3332211111111 1111111111 123222 23459999999999999997 8988888 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
+|+.||... .+.++.++..++..
T Consensus 701 ATSALDT~t-ER~IQaaL~rlca~ 723 (790)
T KOG0056|consen 701 ATSALDTNT-ERAIQAALARLCAN 723 (790)
T ss_pred hhhhcCCcc-HHHHHHHHHHHhcC
Confidence 999999765 46677888887753
No 385
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.61 E-value=1.3e-15 Score=188.12 Aligned_cols=152 Identities=21% Similarity=0.182 Sum_probs=114.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++|+|++++|+ .|+|||++||||||+++.|++++. .+|+|.|+|.|+. ++++++|...+ .
T Consensus 1233 ~vL~~is~~I~~Ge--kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR 1309 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQ--RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR 1309 (1490)
T ss_pred ceeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHH
Confidence 48999999999999 999999999999999999999986 7999999999973 47888887643 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++ ..+. ..+ .+.+.++++.+++ .+++..+-+ .|||++|+++|||+|.+ +|+++||
T Consensus 1310 ~NL--dp~~---~~t-deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr-----~~~ILlL- 1377 (1490)
T TIGR01271 1310 KNL--DPYE---QWS-DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS-----KAKILLL- 1377 (1490)
T ss_pred HHh--Cccc---CCC-HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC-----CCCEEEE-
Confidence 333 2111 112 2344566666554 244544432 39999999999999996 8998888
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+++|+.... .+.+.|..... +.|.|++++
T Consensus 1378 DEaTS~lD~~Te~-~I~~~L~~~~~-----~~TvI~IaH 1410 (1490)
T TIGR01271 1378 DEPSAHLDPVTLQ-IIRKTLKQSFS-----NCTVILSEH 1410 (1490)
T ss_pred eCCcccCCHHHHH-HHHHHHHHHcC-----CCEEEEEec
Confidence 9999999998753 44456654422 567778776
No 386
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.61 E-value=9.7e-16 Score=189.15 Aligned_cols=150 Identities=21% Similarity=0.213 Sum_probs=108.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhh-----hhccccceec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~-----~~~l~v~l~~ 443 (589)
.+|+++++++++|+ +++|+|||||||||||+.|+|+++|..|+|.+.+ +++++.|...+ .+++.+.
T Consensus 440 ~~l~~i~l~i~~G~--~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----~iayv~Q~~~l~~~Ti~eNI~~g--- 510 (1490)
T TIGR01271 440 PVLKNISFKLEKGQ--LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----RISFSPQTSWIMPGTIKDNIIFG--- 510 (1490)
T ss_pred cceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----EEEEEeCCCccCCccHHHHHHhc---
Confidence 37999999999999 9999999999999999999999999999999877 68899886533 2322211
Q ss_pred cCCCCCHHHHHHHHHHHhcc-------cCCC-----ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 444 KGYEKDPAIVAKEAIQEATR-------NGSD-----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~a~l-------~~~d-----~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
..+. . ....++++.+++ ...+ ......||||+||+.|||+|.. +|+++|| |||+++||+
T Consensus 511 ~~~~--~-~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~-----~~~illL-Dep~saLD~ 581 (1490)
T TIGR01271 511 LSYD--E-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYK-----DADLYLL-DSPFTHLDV 581 (1490)
T ss_pred cccc--h-HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccCCH
Confidence 1111 1 111112221111 1111 1234559999999999999995 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
......|...+..+.. +.+.|++|+
T Consensus 582 ~~~~~i~~~~l~~~~~-----~~tvilvtH 606 (1490)
T TIGR01271 582 VTEKEIFESCLCKLMS-----NKTRILVTS 606 (1490)
T ss_pred HHHHHHHHHHHHHHhc-----CCeEEEEeC
Confidence 9987777555554432 567777775
No 387
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.61 E-value=9.1e-16 Score=150.89 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=94.9
Q ss_pred cccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCC---------cEEEEccccc------CccchhhhhHhhhhc
Q 007789 372 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK---------VSVMMAACDT------FRSGAVEQLRTHARR 436 (589)
Q Consensus 372 ~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~---------GkV~l~~~Dt------~RigaveQL~~~~~~ 436 (589)
+++++.+.+| +++|+||||+||||+++.|++++.+.. +.+.+.+.+. .++++++|.....
T Consensus 14 ~~~~l~~~~g---~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 14 DKTTIPFPPG---LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred CCeeeecCCC---cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc--
Confidence 3456666654 899999999999999999999886542 2455555553 3466666654332
Q ss_pred cccceeccCCCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 437 LQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 437 l~v~l~~~~~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
+... ....+.++++. .+. +..+-+.||||+|++.|+++|+... ...|+++|| |||++|+|+..+.
T Consensus 89 -----~~~~----~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~-~~~~~illl-DEP~~~LD~~~~~ 154 (197)
T cd03278 89 -----YSII----SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFR-VRPSPFCVL-DEVDAALDDANVE 154 (197)
T ss_pred -----eeEE----ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhc-cCCCCEEEE-eCCcccCCHHHHH
Confidence 1100 12344556665 233 3344455999999999999986200 124577777 9999999999864
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.+.++.. +.+.|++|+
T Consensus 155 -~l~~~l~~~~~-----~~tiIiitH 174 (197)
T cd03278 155 -RFARLLKEFSK-----ETQFIVITH 174 (197)
T ss_pred -HHHHHHHHhcc-----CCEEEEEEC
Confidence 34366666543 356677776
No 388
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.60 E-value=1.7e-15 Score=168.75 Aligned_cols=155 Identities=21% Similarity=0.229 Sum_probs=113.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhh-ccc-cceeccCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR-RLQ-VPIFEKGY 446 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~-~l~-v~l~~~~~ 446 (589)
.++++++|.+..|+ .|+||||||+||||||+.|+|.+.|..|.|.+... -++|+++|...... ... +.+....+
T Consensus 336 ~l~~~~s~~i~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--v~igyf~Q~~~~l~~~~t~~d~l~~~~ 411 (530)
T COG0488 336 LLLKDLSFRIDRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--VKIGYFDQHRDELDPDKTVLEELSEGF 411 (530)
T ss_pred eeecCceEEecCCC--EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--eEEEEEEehhhhcCccCcHHHHHHhhC
Confidence 47889999999999 99999999999999999999999999999987543 68999999773321 111 11222222
Q ss_pred CCCHHHHHHHHHHHhcccCCC-cccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 007789 447 EKDPAIVAKEAIQEATRNGSD-VVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 524 (589)
Q Consensus 447 ~~d~~~ia~~al~~a~l~~~d-~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~ 524 (589)
.......+...+..+...+-+ ...|.+ |||++.|+.||+.|.. +|.++|| ||||+.||.... ....++|.+
T Consensus 412 ~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~-----~pNvLiL-DEPTNhLDi~s~-~aLe~aL~~ 484 (530)
T COG0488 412 PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ-----PPNLLLL-DEPTNHLDIESL-EALEEALLD 484 (530)
T ss_pred ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc-----CCCEEEE-cCCCccCCHHHH-HHHHHHHHh
Confidence 111245556677777665433 355655 9999999999998884 8888888 999999998865 444455543
Q ss_pred hhcCCCCCCccEEEEcc
Q 007789 525 LSSSPNPQLIDGILLTK 541 (589)
Q Consensus 525 l~~~~~~~~it~IIlTK 541 (589)
+ .=++|++|+
T Consensus 485 f-------~Gtvl~VSH 494 (530)
T COG0488 485 F-------EGTVLLVSH 494 (530)
T ss_pred C-------CCeEEEEeC
Confidence 3 345677776
No 389
>PLN03130 ABC transporter C family member; Provisional
Probab=99.59 E-value=4.3e-15 Score=184.30 Aligned_cols=149 Identities=20% Similarity=0.240 Sum_probs=111.5
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCC-cEEEEcccccCccchhhhhHhh-----hhccccceec
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK-VSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 443 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~-GkV~l~~~Dt~RigaveQL~~~-----~~~l~v~l~~ 443 (589)
+|+++++.+++|+ .++||||+||||||+++.|+|++.|.+ |+|.+.+ +++++.|...+ .+++- +.
T Consensus 632 vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~----~Iayv~Q~p~LfngTIreNI~--fg- 702 (1622)
T PLN03130 632 TLSNINLDVPVGS--LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG----TVAYVPQVSWIFNATVRDNIL--FG- 702 (1622)
T ss_pred eeeceeEEecCCC--EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC----eEEEEcCccccCCCCHHHHHh--CC-
Confidence 7999999999999 999999999999999999999999999 8998643 58999997643 33332 21
Q ss_pred cCCCCCHHHHHHHHHHHhccc--------CCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 444 KGYEKDPAIVAKEAIQEATRN--------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~a~l~--------~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
..+ + .+...++++.+.+. +.+..+ +..||||+||++|||||.+ +|+++|| ||||+++|+
T Consensus 703 ~~~--d-~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~-----~~~IlLL-DEptSALD~ 773 (1622)
T PLN03130 703 SPF--D-PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS-----NSDVYIF-DDPLSALDA 773 (1622)
T ss_pred Ccc--c-HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC-----CCCEEEE-CCCccccCH
Confidence 111 2 23344555554331 222222 2249999999999999995 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
......|++.+..+. .+.|.|++|+
T Consensus 774 ~~~~~I~~~~l~~~l-----~~kTvIlVTH 798 (1622)
T PLN03130 774 HVGRQVFDKCIKDEL-----RGKTRVLVTN 798 (1622)
T ss_pred HHHHHHHHHHhhHHh-----cCCEEEEEEC
Confidence 877777777765442 2567788876
No 390
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.58 E-value=3.4e-15 Score=184.84 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=107.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhh-----hhccccceec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~-----~~~l~v~l~~ 443 (589)
.+|+++++.+++|+ +++|+|||||||||+++.|+|++.|+.|+|.+.+ ++|++.|...+ .+++...
T Consensus 652 ~~l~~isl~i~~G~--~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----~i~yv~Q~~~l~~~Ti~eNI~~g--- 722 (1522)
T TIGR00957 652 PTLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----SVAYVPQQAWIQNDSLRENILFG--- 722 (1522)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----EEEEEcCCccccCCcHHHHhhcC---
Confidence 37999999999999 9999999999999999999999999999999876 68999987533 2222211
Q ss_pred cCCCCCHHHHHHHHHHHhc------c-c-CC----CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 444 KGYEKDPAIVAKEAIQEAT------R-N-GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~a~------l-~-~~----d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
..+ ++. ...++++.+. . . +. .......||||+||++|||+|.. +|+++|| ||||++||+
T Consensus 723 ~~~--~~~-~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~-----~~~illL-DEp~saLD~ 793 (1522)
T TIGR00957 723 KAL--NEK-YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS-----NADIYLF-DDPLSAVDA 793 (1522)
T ss_pred Ccc--CHH-HHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCccccCH
Confidence 111 221 1222232221 1 1 11 12334569999999999999995 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
......|+..+. ... ...+.+.|++|+
T Consensus 794 ~~~~~i~~~l~~-~~~--~~~~~tvIlvTH 820 (1522)
T TIGR00957 794 HVGKHIFEHVIG-PEG--VLKNKTRILVTH 820 (1522)
T ss_pred HHHHHHHHHHhh-hhh--hhcCCEEEEEeC
Confidence 988766644332 111 012467788876
No 391
>PTZ00243 ABC transporter; Provisional
Probab=99.58 E-value=3.5e-15 Score=184.74 Aligned_cols=150 Identities=22% Similarity=0.180 Sum_probs=107.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhh-----hhccccceec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~-----~~~l~v~l~~ 443 (589)
.+|+++++.+++|+ +++|+|||||||||||+.|+|++.|+.|+|.+. .++|+++|...+ .+++ .+..
T Consensus 674 ~iL~~isl~i~~G~--~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----~~i~yv~Q~~~l~~~Tv~enI--~~~~ 745 (1560)
T PTZ00243 674 VLLRDVSVSVPRGK--LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----RSIAYVPQQAWIMNATVRGNI--LFFD 745 (1560)
T ss_pred eeEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----CeEEEEeCCCccCCCcHHHHH--HcCC
Confidence 47999999999999 999999999999999999999999999999874 368999986533 2222 1111
Q ss_pred cCCCCCHHHHHHHHHHH---------h--ccc-CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 444 KGYEKDPAIVAKEAIQE---------A--TRN-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~---------a--~l~-~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
..+. ....++++. + ++. ..+......||||+||+.|||+|.. +|+++|| ||||++||+
T Consensus 746 ---~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~-----~p~illL-DEP~saLD~ 815 (1560)
T PTZ00243 746 ---EEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA-----NRDVYLL-DDPLSALDA 815 (1560)
T ss_pred ---hhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-cCccccCCH
Confidence 1111 112222222 1 111 1123345569999999999999995 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
......++..+.... .+.+.|++|+
T Consensus 816 ~~~~~i~~~~~~~~~-----~~~TvIlvTH 840 (1560)
T PTZ00243 816 HVGERVVEECFLGAL-----AGKTRVLATH 840 (1560)
T ss_pred HHHHHHHHHHHHHhh-----CCCEEEEEeC
Confidence 877666655443221 2567788886
No 392
>PLN03232 ABC transporter C family member; Provisional
Probab=99.56 E-value=7e-15 Score=181.80 Aligned_cols=151 Identities=18% Similarity=0.171 Sum_probs=109.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhh-----hhccccceec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~-----~~~l~v~l~~ 443 (589)
.+|+++++++++|+ .++||||+||||||+++.|+|++.|.+|.+... .-+++++.|...+ .+++. +.
T Consensus 631 ~vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~---~~~Iayv~Q~p~Lf~gTIreNI~--fg- 702 (1495)
T PLN03232 631 PTLSDINLEIPVGS--LVAIVGGTGEGKTSLISAMLGELSHAETSSVVI---RGSVAYVPQVSWIFNATVRENIL--FG- 702 (1495)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEe---cCcEEEEcCccccccccHHHHhh--cC-
Confidence 37999999999999 999999999999999999999999998765321 1258999997643 34332 21
Q ss_pred cCCCCCHHHHHHHHHHHhcc-------c-CCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 444 KGYEKDPAIVAKEAIQEATR-------N-GSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~a~l-------~-~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
..+ ++ +...++++.+.+ . +++..+- ..||||+||++|||||.+ +|+++|| ||||+++|+
T Consensus 703 ~~~--~~-e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~-----~~~IlLL-DEptSaLD~ 773 (1495)
T PLN03232 703 SDF--ES-ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS-----NSDIYIF-DDPLSALDA 773 (1495)
T ss_pred Ccc--CH-HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc-----CCCEEEE-cCCccccCH
Confidence 111 22 334445554432 1 2232222 249999999999999996 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
......|++.+..+. .+.|.|++|+
T Consensus 774 ~t~~~I~~~~l~~~l-----~~kT~IlvTH 798 (1495)
T PLN03232 774 HVAHQVFDSCMKDEL-----KGKTRVLVTN 798 (1495)
T ss_pred HHHHHHHHHHhhhhh-----cCCEEEEEEC
Confidence 887777766665432 2567788886
No 393
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.1e-14 Score=150.11 Aligned_cols=148 Identities=23% Similarity=0.268 Sum_probs=107.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------c-cchhhhhHhhhhcccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------R-SGAVEQLRTHARRLQV 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------R-igaveQL~~~~~~l~v 439 (589)
.+|++++|.++.|+ .+++||++|+||||+++.|-.++.++.|.|.+.+.|+. | +|.|+|...+.+.--
T Consensus 277 ~iL~~isf~i~~g~--tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti- 353 (497)
T COG5265 277 PILNGISFTIPLGK--TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTI- 353 (497)
T ss_pred hhhcCccccccCcc--EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhH-
Confidence 68999999999999 99999999999999999999999999999999999983 2 888888765433321
Q ss_pred ceeccCCCCCH--HHHHHHHHHHhcc--------cCCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 440 PIFEKGYEKDP--AIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 440 ~l~~~~~~~d~--~~ia~~al~~a~l--------~~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
++...|+... .+....+.+.+.+ .+++... .-.|||++||++++|.|.+ +|.+++| ||+
T Consensus 354 -~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk-----~p~il~~-dea 426 (497)
T COG5265 354 -AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK-----NPPILIL-DEA 426 (497)
T ss_pred -HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc-----CCCEEEE-ehh
Confidence 1111222211 1112222222222 2333222 2349999999999999997 9999998 999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSS 527 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~ 527 (589)
|+.||.... +.+...|.+++.
T Consensus 427 tsaldt~te-~~iq~~l~~~~~ 447 (497)
T COG5265 427 TSALDTHTE-QAIQAALREVSA 447 (497)
T ss_pred hhHhhhhHH-HHHHHHHHHHhC
Confidence 999998753 556677776664
No 394
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.50 E-value=2e-14 Score=137.29 Aligned_cols=164 Identities=18% Similarity=0.180 Sum_probs=104.8
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhh--hhHhh-hhc----cccceec
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE--QLRTH-ARR----LQVPIFE 443 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Rigave--QL~~~-~~~----l~v~l~~ 443 (589)
|..++..+..|+ ++-+|||||+||||+|+.+||++. -+|+|.+.|.+.-.....+ +.+.| +.+ ..+|+|.
T Consensus 15 L~plS~qv~aGe--~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGE--ILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccce--EEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 345667788999 999999999999999999999874 6899999999874322221 11211 111 1233321
Q ss_pred --cCCCCCHHHHHHH---HHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCC-EEEEEecCCCCCCHHHHHH
Q 007789 444 --KGYEKDPAIVAKE---AIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPD-LVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 444 --~~~~~d~~~ia~~---al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~Pd-lILLVDEPt~GlD~~~q~~ 516 (589)
..+.. +..++.. +...+++.+.-...+ ..|||+.||+.|+....++....+|+ -+|++|||.++||.. |..
T Consensus 92 YL~L~qP-~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvA-Q~~ 169 (248)
T COG4138 92 YLTLHQP-DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA-QQS 169 (248)
T ss_pred hhhhcCc-hHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHH-HHH
Confidence 12222 2233322 233334433323333 34999999999998888877777775 334449999999986 445
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
.+...+..++.. |+++|+ +-.|.
T Consensus 170 aLdrll~~~c~~----G~~vim-s~HDL 192 (248)
T COG4138 170 ALDRLLSALCQQ----GLAIVM-SSHDL 192 (248)
T ss_pred HHHHHHHHHHhC----CcEEEE-eccch
Confidence 666777777765 555444 44465
No 395
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.49 E-value=3.5e-14 Score=144.16 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=97.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhC-CcEEEEccc-cc-----------CccchhhhhHh---------------hh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAAC-DT-----------FRSGAVEQLRT---------------HA 434 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~-~GkV~l~~~-Dt-----------~RigaveQL~~---------------~~ 434 (589)
|.+.+|||||||||||++..|++++.+. ++++.+.+. |. .+++++.|... ..
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4499999999999999999999999875 456666544 21 14556666421 11
Q ss_pred hccccce---eccCCCCCHHHHHHHHHHHhccc--CC-------------------CccccccCccccccHHHHHHHHhh
Q 007789 435 RRLQVPI---FEKGYEKDPAIVAKEAIQEATRN--GS-------------------DVVLVDTAGRMQDNEPLMRALSKL 490 (589)
Q Consensus 435 ~~l~v~l---~~~~~~~d~~~ia~~al~~a~l~--~~-------------------d~vliDTSGg~qqr~~LaraL~kl 490 (589)
+++.... +...........+.++++.+++. +. +..+-+.|||++|++.++++|+.+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 1111110 00000112235566777777664 11 133445699999999999998721
Q ss_pred hhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 491 IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 491 ~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
. ..+|+++|+ ||||+|+|+..+...+ +.|..+.. +.+.|++|+-+++
T Consensus 185 ~-~~~~~illl-DEPt~~ld~~~~~~~~-~~l~~~~~-----g~~ii~iSH~~~~ 231 (251)
T cd03273 185 L-FKPAPMYIL-DEVDAALDLSHTQNIG-RMIKTHFK-----GSQFIVVSLKEGM 231 (251)
T ss_pred h-ccCCCEEEE-eCCCcCCCHHHHHHHH-HHHHHHcC-----CCEEEEEECCHHH
Confidence 1 015687777 9999999998875443 56655532 5678888886554
No 396
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=9.8e-15 Score=171.74 Aligned_cols=164 Identities=22% Similarity=0.212 Sum_probs=125.4
Q ss_pred cccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh--CCcEEEEcccc----cC--ccchhhhhHhhhhcc
Q 007789 366 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACD----TF--RSGAVEQLRTHARRL 437 (589)
Q Consensus 366 ~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~--~~GkV~l~~~D----t~--RigaveQL~~~~~~l 437 (589)
....+|++|+-.+.+|. ..+|+|++||||||||+.|||-..- -.|.|+|.|.. +| ++|+++|.-.|...+
T Consensus 802 ~~~qLL~~V~G~~kPG~--LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGV--LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred cceEhhhcCceEecCCc--eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCccc
Confidence 33578999999898998 9999999999999999999985321 25789998854 34 499999988887766
Q ss_pred ccc------eeccC-CC---CCHHHHHHHHHHHhcccCCCcccccc-----CccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 438 QVP------IFEKG-YE---KDPAIVAKEAIQEATRNGSDVVLVDT-----AGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 438 ~v~------l~~~~-~~---~d~~~ia~~al~~a~l~~~d~vliDT-----SGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
.|. -+.+. .. .+..+.+++.++.+++..+..-+|.. +..|++|+.|+-+|+ .+|+.|||+
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv-----A~P~~ilFL 954 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV-----ANPSSILFL 954 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe-----cCCceeEEe
Confidence 443 11111 11 12225678899999998877666654 667888999999998 599888888
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEE
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 537 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~I 537 (589)
||||+|||+.+..... +.++.+++.++++..|+|
T Consensus 955 DEPTSGLDsqaA~~i~-~~lrkla~tGqtIlCTIH 988 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVM-RFLRKLADTGQTILCTIH 988 (1391)
T ss_pred cCCCCCccHHHHHHHH-HHHHHHHhcCCeEEEEec
Confidence 9999999999876665 899999998876555543
No 397
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=149.38 Aligned_cols=135 Identities=18% Similarity=0.148 Sum_probs=97.4
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhcc---ccceeccCC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL---QVPIFEKGY 446 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l---~v~l~~~~~ 446 (589)
++++++|-+..+. .+++||||||||||+|+.+.|.+.|+.|.|.-.... +++...|.....--+ -+.++...+
T Consensus 405 iy~~l~fgid~~s--rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~--~~~~y~Qh~~e~ldl~~s~le~~~~~~ 480 (614)
T KOG0927|consen 405 IYKKLNFGIDLDS--RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN--KLPRYNQHLAEQLDLDKSSLEFMMPKF 480 (614)
T ss_pred hhhhhhcccCccc--ceeEecCCCCchhhhHHHHhhccccccccccccccc--cchhhhhhhHhhcCcchhHHHHHHHhc
Confidence 4555556666777 899999999999999999999999999988654322 233344432111111 111222222
Q ss_pred C-CCHHHHHHHHHHHhccc-CCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 447 E-KDPAIVAKEAIQEATRN-GSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 447 ~-~d~~~ia~~al~~a~l~-~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
. ....+....++.++++. +.+++++.+ |+|+|.|+.+++.+.+ +|.++|| ||||+|||....
T Consensus 481 ~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~k-----qP~lLlL-DEPtnhLDi~ti 545 (614)
T KOG0927|consen 481 PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVK-----QPHLLLL-DEPTNHLDIETI 545 (614)
T ss_pred cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhc-----CCcEEEe-cCCCcCCCchhH
Confidence 3 34556677889999987 457888887 9999999999999986 8998888 999999997653
No 398
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.45 E-value=3.6e-13 Score=139.64 Aligned_cols=87 Identities=41% Similarity=0.610 Sum_probs=72.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhC-C-cEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQH-K-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 460 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~-~-GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~ 460 (589)
+.+++|+||+|||||||+.+||.++... + .+|.+..+|+||+++++|+..+++.++++++.. .++.. ...+++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~---~~~~~-l~~~l~~ 269 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA---RDPKE-LRKALDR 269 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceecc---CCHHH-HHHHHHH
Confidence 4499999999999999999999988776 4 699999999999999999999999999988542 23333 3456665
Q ss_pred hcccCCCccccccCc
Q 007789 461 ATRNGSDVVLVDTAG 475 (589)
Q Consensus 461 a~l~~~d~vliDTSG 475 (589)
+ .++|+++|||+|
T Consensus 270 ~--~~~d~vliDt~G 282 (282)
T TIGR03499 270 L--RDKDLILIDTAG 282 (282)
T ss_pred c--cCCCEEEEeCCC
Confidence 4 468999999987
No 399
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.40 E-value=1.2e-12 Score=134.25 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=55.5
Q ss_pred HHHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007789 454 AKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 531 (589)
Q Consensus 454 a~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~ 531 (589)
+.++++.+++.. .+......|||++||+.|+++|.. +..+|+++|| ||||+|||+.+... +.+.|..+.+.
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~--~~~~p~lllL-DEPtsgLD~~~~~~-l~~~L~~l~~~--- 221 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSK--RSTGKTLYIL-DEPTTGLHFHDVKK-LLEVLQRLVDK--- 221 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhc--CCCCCcEEEE-ECCCCCCCHHHHHH-HHHHHHHHHhC---
Confidence 344566666654 233344459999999999999994 0002678877 99999999998754 44677776643
Q ss_pred CCccEEEEcc
Q 007789 532 QLIDGILLTK 541 (589)
Q Consensus 532 ~~it~IIlTK 541 (589)
+.+.|++|+
T Consensus 222 -g~tvIiitH 230 (261)
T cd03271 222 -GNTVVVIEH 230 (261)
T ss_pred -CCEEEEEeC
Confidence 567777776
No 400
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.40 E-value=1e-11 Score=131.32 Aligned_cols=184 Identities=23% Similarity=0.304 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcCcccc-----cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcE
Q 007789 339 LKALKDRLMTKNVAAMEEALVRILTPRRS-----IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS 413 (589)
Q Consensus 339 l~~l~~~Ll~~~V~al~~~l~~il~p~~~-----i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~Gk 413 (589)
+.++-+.+++.|..++.+.|+.+-..... ..+++.+.- ..|.|++|+|+|++||||||++..|...+...+.+
T Consensus 9 ~~~l~~~~~~g~~~a~a~~it~~e~~~~~~~~~~~~l~~~~~~--~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~ 86 (332)
T PRK09435 9 VDELVEGVLAGDRAALARAITLVESTRPDHRALAQELLDALLP--HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHK 86 (332)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCchhhHHHHHHHHHHhh--cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 44566677888888888888877654331 234444321 25778999999999999999999999999988889
Q ss_pred EEEccccc---CccchhhhhHhhhhcc----cc---ceeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHH
Q 007789 414 VMMAACDT---FRSGAVEQLRTHARRL----QV---PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPL 483 (589)
Q Consensus 414 V~l~~~Dt---~RigaveQL~~~~~~l----~v---~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~L 483 (589)
|.+.+.|+ +.-|++-..+...+.+ ++ .....+.....+..+.+++..+...++|+++|||+|..+....+
T Consensus 87 v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i 166 (332)
T PRK09435 87 VAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETAV 166 (332)
T ss_pred EEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhHH
Confidence 99999998 3334443222222211 11 11112333345677788888888899999999999998766654
Q ss_pred HHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 484 MRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 484 araL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+ ...|++++|..|-+|.|..... .-+.+ ..+.+++||.|..
T Consensus 167 ~---------~~aD~vlvv~~p~~gd~iq~~k----~gi~E--------~aDIiVVNKaDl~ 207 (332)
T PRK09435 167 A---------GMVDFFLLLQLPGAGDELQGIK----KGIME--------LADLIVINKADGD 207 (332)
T ss_pred H---------HhCCEEEEEecCCchHHHHHHH----hhhhh--------hhheEEeehhccc
Confidence 2 2678888877787887654321 11212 2257999999986
No 401
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.39 E-value=2.6e-13 Score=135.06 Aligned_cols=157 Identities=14% Similarity=0.075 Sum_probs=87.7
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccc---c-ceec
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ---V-PIFE 443 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~---v-~l~~ 443 (589)
..++.++++ + +++|+|||||||||++++|+.++-. .+ .....-+++++.|.....+.+. + .++.
T Consensus 17 ~~~l~~~~~-----~--i~~ivGpNGaGKSTll~~i~~~~G~---~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T cd03274 17 EQVIGPFHK-----S--FSAIVGPNGSGKSNVIDSMLFVFGF---RA--SKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQ 84 (212)
T ss_pred CeeeccCCC-----C--eEEEECCCCCCHHHHHHHHHHHhcc---CH--HHhhhhhHHHHhcCCCCCCCCceEEEEEEEE
Confidence 346666655 4 9999999999999999999843211 11 0111112444444333222221 1 1111
Q ss_pred cC--------CCCCHH--H-H--HHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 444 KG--------YEKDPA--I-V--AKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 444 ~~--------~~~d~~--~-i--a~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
.. ++.... . . ..++++.+++.+. +..+-..|+||++++.|+++++. .....|+++++ ||||+|+
T Consensus 85 ~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~-~~~~~p~ilil-DEPt~gL 162 (212)
T cd03274 85 EIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFAL-HHYKPTPLYVM-DEIDAAL 162 (212)
T ss_pred eCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHh-cccCCCCEEEE-cCCCcCC
Confidence 11 111000 0 0 1223333444332 33334559999999999999862 00014677777 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 510 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
|+..+ ..+.+.+..+.. +.+.|++|..++
T Consensus 163 D~~~~-~~l~~~l~~~~~-----~~~~iivs~~~~ 191 (212)
T cd03274 163 DFRNV-SIVANYIKERTK-----NAQFIVISLRNN 191 (212)
T ss_pred CHHHH-HHHHHHHHHHcC-----CCEEEEEECcHH
Confidence 99876 455577766542 456788886543
No 402
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=6.3e-13 Score=143.99 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=91.9
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEE--EEcccccCccchhhhhHhhhhccccceeccC--
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV--MMAACDTFRSGAVEQLRTHARRLQVPIFEKG-- 445 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV--~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~-- 445 (589)
+|.+-++++..|+ .++|||+||+||||||+.|+. -.-+..-| .+.|+||... .| -..++.-...+....
T Consensus 95 LL~~a~L~L~~Gr--RYGLvGrNG~GKsTLLRaia~-~~v~~f~veqE~~g~~t~~~---~~-~l~~D~~~~dfl~~e~~ 167 (582)
T KOG0062|consen 95 LLNKANLTLSRGR--RYGLVGRNGIGKSTLLRAIAN-GQVSGFHVEQEVRGDDTEAL---QS-VLESDTERLDFLAEEKE 167 (582)
T ss_pred hhcCCceeeeccc--ccceeCCCCCcHHHHHHHHHh-cCcCccCchhheeccchHHH---hh-hhhccHHHHHHHHhhhh
Confidence 5666777788999 899999999999999999997 11111122 1344554221 11 000111001111000
Q ss_pred --CCCCHHHHHHHHHHHhcccC-CCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHH
Q 007789 446 --YEKDPAIVAKEAIQEATRNG-SDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 521 (589)
Q Consensus 446 --~~~d~~~ia~~al~~a~l~~-~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 521 (589)
.+....++...++.-++... ....++.+ |||-+-|++|||||.. +||++|| ||||+.||..+.+ -
T Consensus 168 l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~-----~pDlLLL-DEPTNhLDv~av~-----W 236 (582)
T KOG0062|consen 168 LLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFA-----KPDLLLL-DEPTNHLDVVAVA-----W 236 (582)
T ss_pred hhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhc-----CCCEEee-cCCcccchhHHHH-----H
Confidence 00022333333554443321 23556666 9999999999999995 9999998 9999999987652 2
Q ss_pred HHHhhcCCCCCCccEEEEcc
Q 007789 522 LADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 522 l~~l~~~~~~~~it~IIlTK 541 (589)
|..+.. +..+|++|+++
T Consensus 237 Le~yL~---t~~~T~liVSH 253 (582)
T KOG0062|consen 237 LENYLQ---TWKITSLIVSH 253 (582)
T ss_pred HHHHHh---hCCceEEEEec
Confidence 333332 34789999988
No 403
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.7e-12 Score=136.99 Aligned_cols=174 Identities=14% Similarity=0.111 Sum_probs=121.1
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-------Cc--cchhhhhHhhhhccccce
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FR--SGAVEQLRTHARRLQVPI 441 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-------~R--igaveQL~~~~~~l~v~l 441 (589)
+..||+++.+|+ ++.|+|.|||||||++..|.|+++|++|+|+++|..+ || ..+|+-...+...+
T Consensus 339 vgPiNl~ikrGe--lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l---- 412 (546)
T COG4615 339 VGPINLTIKRGE--LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL---- 412 (546)
T ss_pred ecceeeEEecCc--EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh----
Confidence 456788889999 9999999999999999999999999999999999765 33 33333222222211
Q ss_pred eccCCC-CCHHHHHHHHHHHhcc------cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 442 FEKGYE-KDPAIVAKEAIQEATR------NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 442 ~~~~~~-~d~~~ia~~al~~a~l------~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
....+ ..+.. +...++++.+ .+-.....+.|-||++|+++.-||.. +.|+++| ||=-+-+||.-+
T Consensus 413 -l~~e~~as~q~-i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE-----eR~Ilv~-DEWAADQDPaFR 484 (546)
T COG4615 413 -LGPEGKASPQL-IEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE-----ERDILVL-DEWAADQDPAFR 484 (546)
T ss_pred -hCCccCCChHH-HHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh-----hCCeEEe-ehhhccCChHHH
Confidence 01111 22332 3334444332 33345566779999999999999996 8888888 999999999977
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEE
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMF 565 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~f 565 (589)
...+...+-.+.+. |.|++.+|+ |. .-.+.+-.+.+..+..++-
T Consensus 485 R~FY~~lLp~LK~q----GKTI~aIsH-Dd--~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 485 REFYQVLLPLLKEQ----GKTIFAISH-DD--HYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred HHHHHHHhHHHHHh----CCeEEEEec-Cc--hhhhhHHHHHHHhcCceee
Confidence 66665666666554 778899998 42 3556666666655544443
No 404
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.38 E-value=2.7e-12 Score=129.09 Aligned_cols=84 Identities=15% Similarity=0.031 Sum_probs=53.2
Q ss_pred cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchh
Q 007789 471 VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVG 550 (589)
Q Consensus 471 iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G 550 (589)
-..||||+|++.|+++|+.. ...+|+++|| ||||+|+|+.... .+.+.+..+.. +.+.+++|..+++
T Consensus 157 ~~lS~G~~~r~~la~~l~~~-~~~~~~illl-DEp~~~ld~~~~~-~~~~~l~~~~~-----~~~ii~~~h~~~~----- 223 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQ-KCDPAPFYLF-DEIDAALDAQYRT-AVANMIKELSD-----GAQFITTTFRPEL----- 223 (243)
T ss_pred cccCHHHHHHHHHHHHHHHh-ccCCCCEEEE-ECCccCCCHHHHH-HHHHHHHHHhC-----CCEEEEEecCHHH-----
Confidence 34499999999999999620 0014788887 9999999999864 44466666543 3444555553322
Q ss_pred hhhHhHHHhCCCEEEEecCCCcc
Q 007789 551 AALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 551 ~als~~~~~g~PI~fig~Gq~v~ 573 (589)
. ...-.|..+.+-|++.
T Consensus 224 --~----~~~d~i~~l~~~~~~~ 240 (243)
T cd03272 224 --L----EVADKFYGVKFRNKVS 240 (243)
T ss_pred --H----hhCCEEEEEEEECCEE
Confidence 1 2233566666655543
No 405
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.37 E-value=1.5e-12 Score=156.39 Aligned_cols=149 Identities=21% Similarity=0.240 Sum_probs=114.7
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHh-----hhhccccceecc
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-----HARRLQVPIFEK 444 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~-----~~~~l~v~l~~~ 444 (589)
.|+||+|.+++|+ .+++||+.|+|||+||..|.|.+...+|+|.+.|. ++|+.|..- +.+++ +|..
T Consensus 536 tL~dIn~~i~~G~--lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----iaYv~Q~pWI~ngTvreNI---LFG~ 606 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQ--LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----VAYVPQQPWIQNGTVRENI---LFGS 606 (1381)
T ss_pred cccceeEEecCCC--EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----EEEeccccHhhCCcHHHhh---hcCc
Confidence 7999999999999 99999999999999999999999999999999886 889998663 33332 1111
Q ss_pred CCCCCHHHHHHHHHHHhccc-------CCCccc-----cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 445 GYEKDPAIVAKEAIQEATRN-------GSDVVL-----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 445 ~~~~d~~~ia~~al~~a~l~-------~~d~vl-----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.| ..++.+++++.+.+. .-|... +..||||+||+.||||+-+ +.|+.|| |+|++.+|+.
T Consensus 607 ~~---d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~-----~adIYLL-DDplSAVDah 677 (1381)
T KOG0054|consen 607 PY---DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ-----DADIYLL-DDPLSAVDAH 677 (1381)
T ss_pred cc---cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc-----cCCEEEE-cCcchhhhHh
Confidence 12 123344455544332 123222 3449999999999999996 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
-....|++.+..+.. +.|.|++|+
T Consensus 678 vg~~if~~ci~~~L~-----~KT~ILVTH 701 (1381)
T KOG0054|consen 678 VGKHIFEECIRGLLR-----GKTVILVTH 701 (1381)
T ss_pred hhHHHHHHHHHhhhc-----CCEEEEEeC
Confidence 888899888854433 567788887
No 406
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.3e-12 Score=138.73 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=102.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhcc-----ccceeccCCCCCHHHHHHHHHH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-----QVPIFEKGYEKDPAIVAKEAIQ 459 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l-----~v~l~~~~~~~d~~~ia~~al~ 459 (589)
.|+|||||||||||+|..|.|-+.|+.|...- ....|+|+..|... +.+ -+.+..+.... +...+...+-
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK--nhrL~iG~FdQh~~--E~L~~Eetp~EyLqr~FNl-pyq~ARK~LG 689 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK--NHRLRIGWFDQHAN--EALNGEETPVEYLQRKFNL-PYQEARKQLG 689 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcCCCCCcchhhc--cceeeeechhhhhH--HhhccccCHHHHHHHhcCC-ChHHHHHHhh
Confidence 79999999999999999999999999997643 23467888877531 222 11121121111 2233445555
Q ss_pred HhcccCC--CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEE
Q 007789 460 EATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 537 (589)
Q Consensus 460 ~a~l~~~--d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~I 537 (589)
.+++... -+.+.|.|||++-|+.|+.--. ..||++|| ||||.+||.... ..+.++|.++ .-.+|
T Consensus 690 ~fGL~sHAHTikikdLSGGQKaRValaeLal-----~~PDvlIL-DEPTNNLDIESI-DALaEAIney-------~GgVi 755 (807)
T KOG0066|consen 690 TFGLASHAHTIKIKDLSGGQKARVALAELAL-----GGPDVLIL-DEPTNNLDIESI-DALAEAINEY-------NGGVI 755 (807)
T ss_pred hhhhhhccceEeeeecCCcchHHHHHHHHhc-----CCCCEEEe-cCCCCCcchhhH-HHHHHHHHhc-------cCcEE
Confidence 5555433 3556788999999999986444 49999998 999999998764 3334454433 22346
Q ss_pred EEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 538 LLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 538 IlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
|+|+ |+- +...|+.. +||-.-|.+.
T Consensus 756 ~VsH-DeR---------Li~eT~C~-LwVvE~Q~i~ 780 (807)
T KOG0066|consen 756 MVSH-DER---------LIVETDCN-LWVVENQGID 780 (807)
T ss_pred EEec-ccc---------eeeecCce-EEEEccCChh
Confidence 6665 542 22345554 4555556664
No 407
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.37 E-value=1.7e-12 Score=126.84 Aligned_cols=180 Identities=18% Similarity=0.169 Sum_probs=125.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhh------hhH-hhhhcc----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE------QLR-THARRL---- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Rigave------QL~-~~~~~l---- 437 (589)
.++-++++.++.|. ...+||.||+||||+|+.|+|-...-+|.|.+.+.+.|+--.++ -|- .|.+..
T Consensus 28 P~~~Dfnldlp~gs--RcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag 105 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGS--RCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG 105 (291)
T ss_pred ceEEEEeeccCCCc--eEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccc
Confidence 46778999999998 89999999999999999999976666799999999998721111 111 111111
Q ss_pred cccee---------ccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 438 QVPIF---------EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 438 ~v~l~---------~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
.+|+. ....+.++ .+-...+..+.+ +..-.+-..|-|+++|+.|+..|. .|-.+||+||-|+-
T Consensus 106 evplq~D~sae~mifgV~g~dp-~Rre~LI~iLDI-dl~WRmHkvSDGqrRRVQicMGLL------~PfkVLLLDEVTVD 177 (291)
T KOG2355|consen 106 EVPLQGDISAEHMIFGVGGDDP-ERREKLIDILDI-DLRWRMHKVSDGQRRRVQICMGLL------KPFKVLLLDEVTVD 177 (291)
T ss_pred cccccccccHHHHHhhccCCCh-hHhhhhhhheec-cceEEEeeccccchhhhHHHHhcc------cceeEEEeeeeEee
Confidence 12211 11123344 444555555433 233445556999999999999998 78778888999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||.++++ ..|.-+..+...++.+++..|+ ||+. ....--++|+..|+-+.
T Consensus 178 LDVlARa----dLLeFlkeEce~RgatIVYATHIFDGL-----------e~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 178 LDVLARA----DLLEFLKEECEQRGATIVYATHIFDGL-----------ETWPTHLVYIKSGKLVD 228 (291)
T ss_pred hHHHHHH----HHHHHHHHHHhhcCcEEEEEeeeccch-----------hhcchhEEEecCCeeee
Confidence 9999887 4444444555567889999888 6775 23455688999988764
No 408
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.37 E-value=1.2e-12 Score=146.28 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=103.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhh-----hhccccceec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~-----~~~l~v~l~~ 443 (589)
..|++.++.+++|+ .+.|.|+|||||||+++.|||+-+--.|+|.+-... +.-+++|.+.+ .+.+- |.
T Consensus 407 ~ll~~l~~~v~~G~--~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~--~~lflpQ~PY~p~GtLre~l~---YP 479 (604)
T COG4178 407 TLLSELNFEVRPGE--RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADS--ALLFLPQRPYLPQGTLREALC---YP 479 (604)
T ss_pred eeeccceeeeCCCC--EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCC--ceEEecCCCCCCCccHHHHHh---CC
Confidence 56889999999999 999999999999999999999888778888776221 23345554432 22222 22
Q ss_pred cCCCCCHHHHHHHHHHHhcccCCCccc-----cc--cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 444 KGYEKDPAIVAKEAIQEATRNGSDVVL-----VD--TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~a~l~~~d~vl-----iD--TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
.....-+.+...+++..+++.++-..+ -| .|+|+|||+++||.|. ++|+.++| ||+|++||+..+.+
T Consensus 480 ~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL-----~kP~~v~L-DEATsALDe~~e~~ 553 (604)
T COG4178 480 NAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL-----HKPKWVFL-DEATSALDEETEDR 553 (604)
T ss_pred CCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH-----cCCCEEEE-ecchhccChHHHHH
Confidence 211111223344566666554431111 12 3999999999999999 59999998 99999999998765
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+ +.+++-. .+++.|-+.+
T Consensus 554 l~-q~l~~~l-----p~~tvISV~H 572 (604)
T COG4178 554 LY-QLLKEEL-----PDATVISVGH 572 (604)
T ss_pred HH-HHHHhhC-----CCCEEEEecc
Confidence 55 4543211 2455555544
No 409
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.37 E-value=1.1e-12 Score=130.17 Aligned_cols=156 Identities=14% Similarity=0.040 Sum_probs=87.5
Q ss_pred ccccccc-cCCceEEEEEecCCCcHHHHHHHHHHhH-hhCCcEEEEc-cccc-------CccchhhhhHhhhhcccccee
Q 007789 373 DVHAAKE-QRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQHKVSVMMA-ACDT-------FRSGAVEQLRTHARRLQVPIF 442 (589)
Q Consensus 373 ~Is~~i~-~Gep~iI~LVGpNGvGKTTlLakLAgll-~~~~GkV~l~-~~Dt-------~RigaveQL~~~~~~l~v~l~ 442 (589)
+|.|... .|+ +++|+||||+||||++..|++.+ -+..+..... -.+. .+++.++|... ....+
T Consensus 19 ~i~~~~~~~~~--~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~--~~~~~--- 91 (213)
T cd03279 19 VIDFTGLDNNG--LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGG--KKYRV--- 91 (213)
T ss_pred EEeCCCCCccC--EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECC--eEEEE---
Confidence 3455433 366 99999999999999999999633 2332222221 0011 12333333220 00000
Q ss_pred ccCCCCCHHHHHHHH-HHHhcccCC-CccccccCccccccHHHHHHHHh---hh--hhcCCCEEEEEecCCCCCCHHHHH
Q 007789 443 EKGYEKDPAIVAKEA-IQEATRNGS-DVVLVDTAGRMQDNEPLMRALSK---LI--YLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 443 ~~~~~~d~~~ia~~a-l~~a~l~~~-d~vliDTSGg~qqr~~LaraL~k---l~--~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
.+..+.+.......+ +.......+ +..+...|||+++++.|+++|+. +. ...+|+++|| |||++++|+....
T Consensus 92 ~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll-DEp~~~lD~~~~~ 170 (213)
T cd03279 92 ERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI-DEGFGTLDPEALE 170 (213)
T ss_pred EEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE-eCCcccCCHHHHH
Confidence 011133333322211 222222222 33334459999999999999973 00 0125678887 9999999998764
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+.+..+... +.+.+++|+
T Consensus 171 -~~~~~l~~~~~~----~~tii~itH 191 (213)
T cd03279 171 -AVATALELIRTE----NRMVGVISH 191 (213)
T ss_pred -HHHHHHHHHHhC----CCEEEEEEC
Confidence 444677666532 667888887
No 410
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.34 E-value=3e-12 Score=126.09 Aligned_cols=139 Identities=19% Similarity=0.113 Sum_probs=78.0
Q ss_pred cccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhh---hccccceec-----
Q 007789 372 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA---RRLQVPIFE----- 443 (589)
Q Consensus 372 ~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~---~~l~v~l~~----- 443 (589)
+++.+.+.+| +.+|+||||+||||++..|...+..... . .+|...+.++.... ..+.+.+-.
T Consensus 13 ~~~~l~f~~g---l~~i~G~NGsGKStll~ai~~~l~~~~~---~----~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~ 82 (198)
T cd03276 13 RHLQIEFGPR---VNFIVGNNGSGKSAILTALTIGLGGKAS---D----TNRGSSLKDLIKDGESSAKITVTLKNQGLDA 82 (198)
T ss_pred eeeEEecCCC---eEEEECCCCCcHHHHHHHHHHHhcCCcc---c----ccccccHHHHhhCCCCeEEEEEEEEcCCccC
Confidence 3444554444 8899999999999999999865433211 0 11111111111111 111111100
Q ss_pred cCCCCCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHH
Q 007789 444 KGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 522 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l 522 (589)
..........+.++++. ... +..+-..||||++++.|+++|+. ....+|+++|| |||++|+|+..+...+ +.|
T Consensus 83 ~~~~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~-~~~~~p~illl-DEP~~glD~~~~~~~~-~~l 156 (198)
T cd03276 83 NPLCVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSL-WEVMESPFRCL-DEFDVFMDMVNRKIST-DLL 156 (198)
T ss_pred CcCCHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHH-hcccCCCEEEe-cCcccccCHHHHHHHH-HHH
Confidence 00001122445555554 333 33344459999999999999841 11149999998 9999999998764444 666
Q ss_pred HHhh
Q 007789 523 ADLS 526 (589)
Q Consensus 523 ~~l~ 526 (589)
..+.
T Consensus 157 ~~~~ 160 (198)
T cd03276 157 VKEA 160 (198)
T ss_pred HHHH
Confidence 6654
No 411
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.33 E-value=9.4e-12 Score=136.68 Aligned_cols=195 Identities=13% Similarity=0.189 Sum_probs=140.2
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhH--------
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLR-------- 431 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~-------- 431 (589)
.+++++|++.+|+ |++|.|.=|+|+|-++..|.|+.++.+|+|.+.|..+- -++++.-.|
T Consensus 274 ~~~dvSf~vr~GE--IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGE--ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCc--EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 4679999999999 99999999999999999999998899999999998652 155555444
Q ss_pred -hhhhccccceecc------CCCCCHHHHHHHHHHHhcccCCC-cccccc-CccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 432 -THARRLQVPIFEK------GYEKDPAIVAKEAIQEATRNGSD-VVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 432 -~~~~~l~v~l~~~------~~~~d~~~ia~~al~~a~l~~~d-~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
.+.+++.++.... .........+.+.++.+...-.+ ...+.+ |||.||++.|+|.|. .+|+++||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~-----~~p~vLil- 425 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA-----TDPKVLIL- 425 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh-----cCCCEEEE-
Confidence 3355554442211 01112234566667766554332 245555 999999999999999 49999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEE-EccccccccchhhhhHhHHHhCCCEEEEecCCCcccc--cCCC
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL-LTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDL--KKLN 579 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~II-lTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL--~~~~ 579 (589)
||||.|.|.-+....+ +.+.+++.. |...++ .+.++++ +.++ -.|.-+..|+-+..+ +..+
T Consensus 426 DEPTRGIDVGAK~eIy-~li~~lA~~----G~ail~iSSElpEl-------l~~~----DRIlVm~~Gri~~e~~~~~~t 489 (500)
T COG1129 426 DEPTRGIDVGAKAEIY-RLIRELAAE----GKAILMISSELPEL-------LGLS----DRILVMREGRIVGELDREEAT 489 (500)
T ss_pred CCCCcCcccchHHHHH-HHHHHHHHC----CCEEEEEeCChHHH-------HhhC----CEEEEEECCEEEEEeccccCC
Confidence 9999999998876666 888888876 455544 4556664 3333 367778888877633 3377
Q ss_pred HHHHHHHhh
Q 007789 580 VKSIVKTLL 588 (589)
Q Consensus 580 ~~~~v~~Ll 588 (589)
.+.++.+.+
T Consensus 490 ee~im~~a~ 498 (500)
T COG1129 490 EEAIMAAAF 498 (500)
T ss_pred HHHHHHHhh
Confidence 777776543
No 412
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.32 E-value=2.3e-12 Score=127.35 Aligned_cols=138 Identities=13% Similarity=0.066 Sum_probs=82.1
Q ss_pred EEEEEecCCCcHHHHHHHHH----HhHhhCCcEEEEc------ccccCccchhhhhHhhhhcccc----ceeccCCCCCH
Q 007789 385 VVVFVGVNGVGKSTNLAKVA----YWLLQHKVSVMMA------ACDTFRSGAVEQLRTHARRLQV----PIFEKGYEKDP 450 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLA----gll~~~~GkV~l~------~~Dt~RigaveQL~~~~~~l~v----~l~~~~~~~d~ 450 (589)
+++|+||||+||||++..|+ |...++.+.+... +..-.+++.++|... .+.+.+ .++...... +
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~-~~~~~v~r~~~~~~~~~~~-~ 101 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENAN-GKKYTITRSLAILENVIFC-H 101 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCC-CCEEEEEEEhhHhhceeee-c
Confidence 99999999999999999996 5556666544311 111123555555431 111111 111111000 1
Q ss_pred HHHHHHHHHHhcccCCCccccccCcccccc------HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 007789 451 AIVAKEAIQEATRNGSDVVLVDTAGRMQDN------EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 524 (589)
Q Consensus 451 ~~ia~~al~~a~l~~~d~vliDTSGg~qqr------~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~ 524 (589)
.....+.+ +..+-+.|+|++++ ++++++|. .+|++++| |||+++||+......+.+.+.+
T Consensus 102 ~~~~~~~~--------~~~~~~LS~G~~~~~~la~rlala~al~-----~~p~illl-DEP~~~LD~~~~~~~l~~~l~~ 167 (204)
T cd03240 102 QGESNWPL--------LDMRGRCSGGEKVLASLIIRLALAETFG-----SNCGILAL-DEPTTNLDEENIEESLAEIIEE 167 (204)
T ss_pred hHHHHHHH--------hcCccccCccHHHHHHHHHHHHHHHHhc-----cCCCEEEE-cCCccccCHHHHHHHHHHHHHH
Confidence 11112221 33344569999996 56777776 48999998 9999999998764245577766
Q ss_pred hhcCCCCCCccEEEEcc
Q 007789 525 LSSSPNPQLIDGILLTK 541 (589)
Q Consensus 525 l~~~~~~~~it~IIlTK 541 (589)
+.... +.+.+++|+
T Consensus 168 ~~~~~---~~~iiiitH 181 (204)
T cd03240 168 RKSQK---NFQLIVITH 181 (204)
T ss_pred HHhcc---CCEEEEEEe
Confidence 65431 456777777
No 413
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.31 E-value=5.7e-12 Score=127.88 Aligned_cols=149 Identities=12% Similarity=0.065 Sum_probs=86.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc--------------cCccchhh--hhHh---hhhcc--c-ccee
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD--------------TFRSGAVE--QLRT---HARRL--Q-VPIF 442 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D--------------t~Rigave--QL~~---~~~~l--~-v~l~ 442 (589)
+++|+|||||||||++..|++.+.+..+++.....+ ...+.... |... ..+.+ + ..++
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 899999999999999999999887665555432211 01111111 1100 00000 0 1111
Q ss_pred ccCCCCCHHHHHHHHHHHhcccCCC-----------------------ccccccCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 443 EKGYEKDPAIVAKEAIQEATRNGSD-----------------------VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 443 ~~~~~~d~~~ia~~al~~a~l~~~d-----------------------~vliDTSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
..+..... ..+.+.++.+++.-.. ..+.+.|||+++++.|+++|+. -....|+++
T Consensus 104 ingk~~s~-~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~-~~~~~p~~l 181 (247)
T cd03275 104 INGKVVSL-KEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAI-HSYQPAPFF 181 (247)
T ss_pred ECCEEecH-HHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHH-hccCCCCEE
Confidence 11111222 2334566655553110 1114459999999999999983 000137888
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|| ||||+|||+.... .+.+.|..+... +.+.|++|+
T Consensus 182 ll-DEPt~~LD~~~~~-~l~~~i~~~~~~----g~~vi~isH 217 (247)
T cd03275 182 VL-DEVDAALDNTNVG-KVASYIREQAGP----NFQFIVISL 217 (247)
T ss_pred EE-ecccccCCHHHHH-HHHHHHHHhccC----CcEEEEEEC
Confidence 87 9999999998764 344666666432 667788887
No 414
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.31 E-value=7.9e-12 Score=150.24 Aligned_cols=142 Identities=17% Similarity=0.195 Sum_probs=103.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhc---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARR--- 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~--- 436 (589)
.+|++|++.+++|+ -|+|||.+||||||++..|-.+..|.+|+|.|+|+|+. |++.++|.+.+..-
T Consensus 1154 ~VLk~is~~I~p~e--KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGE--KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred chhcCceEEEcCCc--eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence 58999999999999 99999999999999999999999999999999999995 46666666544221
Q ss_pred cccceeccCCCCCHHHHHHHHHHHhcc--------cCCCcccccc----CccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 437 LQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVDT----AGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 437 l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vliDT----SGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
.|+.-+.. | ..+..-+|++.+.+ .++|..+.+- |-||+|-++|||||.+ +..+++| ||
T Consensus 1232 ~NLDPf~e-~---sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr-----~skILvL-DE 1301 (1381)
T KOG0054|consen 1232 FNLDPFDE-Y---SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR-----KSKILVL-DE 1301 (1381)
T ss_pred cccCcccc-c---CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc-----cCCEEEE-ec
Confidence 12221111 1 11223345554432 2355555442 8899999999999996 7777777 99
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 007789 505 ALVGNDAVDQLSKFNQKLA 523 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~ 523 (589)
||++.|+.. ....++.|+
T Consensus 1302 ATAsVD~~T-D~lIQ~tIR 1319 (1381)
T KOG0054|consen 1302 ATASVDPET-DALIQKTIR 1319 (1381)
T ss_pred ccccCChHH-HHHHHHHHH
Confidence 999999875 344555554
No 415
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.30 E-value=3.1e-12 Score=139.38 Aligned_cols=187 Identities=21% Similarity=0.262 Sum_probs=109.6
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEE--cccccC-c----cchh----hhhH----h
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM--AACDTF-R----SGAV----EQLR----T 432 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l--~~~Dt~-R----igav----eQL~----~ 432 (589)
+.+++++.|++..|+ -++|+|+||+||||+|++|++-..|..-.+-+ .....- + +-++ ++.+ .
T Consensus 88 ~~l~kd~~~El~~g~--rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~ 165 (614)
T KOG0927|consen 88 VELIKDVTLELNRGR--RYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEY 165 (614)
T ss_pred ceeeeeeeEEecCCc--eEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHH
Confidence 568899999999999 99999999999999999999977765433322 221110 0 0011 1111 1
Q ss_pred hhhcc-----------ccceeccCCCCCHHHHHHHHHHHhcccC-----CCccccccCccccccHHHHHHHHhhhhhcCC
Q 007789 433 HARRL-----------QVPIFEKGYEKDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP 496 (589)
Q Consensus 433 ~~~~l-----------~v~l~~~~~~~d~~~ia~~al~~a~l~~-----~d~vliDTSGg~qqr~~LaraL~kl~~~~~P 496 (589)
+.+.+ ...++.+....++..+..++...+.-.+ .+....|.|||.+.|++|||+|.. +|
T Consensus 166 ~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~-----kP 240 (614)
T KOG0927|consen 166 LAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQ-----KP 240 (614)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhc-----CC
Confidence 11111 0112222222222222222222211112 245667889999999999999996 99
Q ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccchhhhhHhHHHhCCC-EEEEecCCCc
Q 007789 497 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAP-VMFVGCGQSY 572 (589)
Q Consensus 497 dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k~G~als~~~~~g~P-I~fig~Gq~v 572 (589)
+++|| ||||++||..+.. -+.+.|..+. . + ..+|+++ -|.+ -|..-.|++...+- +.|-|+-+.|
T Consensus 241 ~LLLL-DEPtnhLDleA~~-wLee~L~k~d----~-~-~lVi~sh~QDfl---n~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 241 DLLLL-DEPTNHLDLEAIV-WLEEYLAKYD----R-I-ILVIVSHSQDFL---NGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred CEEEe-cCCccCCCHHHHH-HHHHHHHhcc----C-c-eEEEEecchhhh---hhHhhhhheecccceeeecCCHHHH
Confidence 99998 9999999987642 3323333221 1 1 3344433 3333 45666777776665 7776764444
No 416
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.28 E-value=5.5e-11 Score=122.25 Aligned_cols=184 Identities=26% Similarity=0.330 Sum_probs=133.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcCcccc-----cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcE
Q 007789 339 LKALKDRLMTKNVAAMEEALVRILTPRRS-----IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS 413 (589)
Q Consensus 339 l~~l~~~Ll~~~V~al~~~l~~il~p~~~-----i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~Gk 413 (589)
++.+.+.|++.|.++|.++|+-+-+.... .++|+.+.. ..|.+++|+|.|++||||||++-+|.-.+...+.+
T Consensus 4 ~~~l~e~l~~GdrrAlARaITlvEs~~~~h~~~a~~ll~~l~p--~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~r 81 (323)
T COG1703 4 VDELIERLLAGDRRALARAITLVESRRPDHRALARELLRALYP--RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHR 81 (323)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCchhhhHHHHHHHHHhh--cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcE
Confidence 34566788899999999999866554433 355655443 47889999999999999999999999999988999
Q ss_pred EEEccccc---CccchhhhhHhhhhccc----ccee---ccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHH
Q 007789 414 VMMAACDT---FRSGAVEQLRTHARRLQ----VPIF---EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPL 483 (589)
Q Consensus 414 V~l~~~Dt---~RigaveQL~~~~~~l~----v~l~---~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~L 483 (589)
|.+.+.|+ |.-|++--.++-.+.+. +-+. .+++-........+++..+...+||+++|.|+|--|..+.+
T Consensus 82 VaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I 161 (323)
T COG1703 82 VAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI 161 (323)
T ss_pred EEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH
Confidence 99999997 55666655554444432 2111 22333334566677888888899999999999999999888
Q ss_pred HHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 484 MRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 484 araL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+. -.|.+++|-=|-.|-|. +.++.-+.++. |.++++|+|.-
T Consensus 162 ~~---------~aDt~~~v~~pg~GD~~----Q~iK~GimEia--------Di~vINKaD~~ 202 (323)
T COG1703 162 AN---------MADTFLVVMIPGAGDDL----QGIKAGIMEIA--------DIIVINKADRK 202 (323)
T ss_pred hh---------hcceEEEEecCCCCcHH----HHHHhhhhhhh--------heeeEeccChh
Confidence 75 45677777778777553 33334444443 66999999953
No 417
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.26 E-value=1.2e-11 Score=132.49 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=105.6
Q ss_pred ccccccccc-----cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceec--
Q 007789 371 LRDVHAAKE-----QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE-- 443 (589)
Q Consensus 371 L~~Is~~i~-----~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~-- 443 (589)
+.+..+.+. .|+ +|+++||||-||||+++.|||.++|+.|. ..++ ++++-+|--.---...|.-+.
T Consensus 352 ~g~F~L~V~~G~i~~gE--vigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~-~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 352 YGDFKLEVEEGEIYDGE--VIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL-KVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred cCceEEEecCCeeecce--EEEEECCCCcchHHHHHHHhccccCCCCC----Cccc-eEeecceeecCCCCCcHHHHHHH
Confidence 445555544 567 99999999999999999999999999886 2222 333333311000000000000
Q ss_pred cCCC-CCHHHHHHHHHHHhcccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHH
Q 007789 444 KGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 521 (589)
Q Consensus 444 ~~~~-~d~~~ia~~al~~a~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 521 (589)
.... -...-.-.++++-+.+... +..+-+.|||+.||+++|.+|.+ +.|+.|| |||++-||...+. ...++
T Consensus 425 ~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~r-----eADlYll-DEPSA~LDvEqR~-~vakv 497 (591)
T COG1245 425 AIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSR-----EADLYLL-DEPSAYLDVEQRI-IVAKV 497 (591)
T ss_pred hhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhcc-----ccCEEEe-cCchhhccHHHHH-HHHHH
Confidence 0000 0000111223333344433 34445569999999999999996 9999998 9999999987543 44477
Q ss_pred HHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEec
Q 007789 522 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGC 568 (589)
Q Consensus 522 l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~ 568 (589)
|+.+.... ..+.+|+-+ |- +-+-|.+..-|+|-|.
T Consensus 498 IRR~~e~~---~kta~vVdH-Di--------~~~dyvsDr~ivF~Ge 532 (591)
T COG1245 498 IRRFIENN---EKTALVVDH-DI--------YMIDYVSDRLIVFEGE 532 (591)
T ss_pred HHHHHhhc---CceEEEEec-ce--------ehhhhhhceEEEEecC
Confidence 77777653 556666544 43 2345667778888885
No 418
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.26 E-value=6.2e-12 Score=123.59 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=83.3
Q ss_pred cccccccccCCceEEEEEecCCCcHHHHHHHHH-HhHhhCCc-EEEEcccccCccchhhhhHhhhhccccceeccCCCCC
Q 007789 372 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA-YWLLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 449 (589)
Q Consensus 372 ~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLA-gll~~~~G-kV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d 449 (589)
-++++.+..|+ .+++|+||||+||||+++.|+ ..+.++.| -|-. .....+++.+|... .+ +.
T Consensus 18 ~~~~~~i~~~~-~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~--~~~~~~~~~~~~~~---~l---------g~- 81 (200)
T cd03280 18 VPLDIQLGENK-RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA--AEGSSLPVFENIFA---DI---------GD- 81 (200)
T ss_pred EcceEEECCCc-eEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc--cccccCcCccEEEE---ec---------Cc-
Confidence 46778888872 289999999999999999998 44444444 2221 11112333333211 00 00
Q ss_pred HHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
. . ..+ ..+.+ |++|+++..+++++. +|+++|+ |||+.|+|+..........+..+.+.
T Consensus 82 ~-~------------~l~-~~~s~fs~g~~~~~~i~~~~~------~p~llll-DEp~~glD~~~~~~i~~~~l~~l~~~ 140 (200)
T cd03280 82 E-Q------------SIE-QSLSTFSSHMKNIARILQHAD------PDSLVLL-DELGSGTDPVEGAALAIAILEELLER 140 (200)
T ss_pred h-h------------hhh-cCcchHHHHHHHHHHHHHhCC------CCcEEEE-cCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 0 0 001 11234 999999988887653 8998888 99999999988755444456555432
Q ss_pred CCCCCccEEEEccccc
Q 007789 529 PNPQLIDGILLTKFDT 544 (589)
Q Consensus 529 ~~~~~it~IIlTKlD~ 544 (589)
+.+.+++|+..+
T Consensus 141 ----~~~vi~~tH~~~ 152 (200)
T cd03280 141 ----GALVIATTHYGE 152 (200)
T ss_pred ----CCEEEEECCHHH
Confidence 667889888543
No 419
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.21 E-value=3.2e-11 Score=118.97 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=29.6
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
+++++++. .|+ +++|+||||+||||+++.|++...
T Consensus 16 v~n~i~l~--~g~--~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 16 VANDIDME--KKN--GILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred ecceEEEc--CCc--EEEEECCCCCChHHHHHHHHHHHH
Confidence 56777766 467 999999999999999999998553
No 420
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.17 E-value=3e-10 Score=118.75 Aligned_cols=170 Identities=22% Similarity=0.216 Sum_probs=107.8
Q ss_pred HHHHHHHHhcCccc-ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc---cchhh
Q 007789 353 AMEEALVRILTPRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAVE 428 (589)
Q Consensus 353 al~~~l~~il~p~~-~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R---igave 428 (589)
++.+.++.+-.... ...+|+++++....+. +|+|+|++|||||||+..|+..+...+.+|.+.++|... .|++.
T Consensus 5 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 82 (300)
T TIGR00750 5 ALARAITLVENRHPEAKQLLDRIMPYTGNAH--RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSIL 82 (300)
T ss_pred HHHHHHHHHhCCChHHHHHHHhCCcccCCce--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhc
Confidence 34444444432222 2467888887766665 999999999999999999999999889999999999754 23332
Q ss_pred hhHh----hhhccccceec---cCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 429 QLRT----HARRLQVPIFE---KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 429 QL~~----~~~~l~v~l~~---~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
..+. +...-++.+.. .+..........++++.+...++|++++||+|..+....++. ..|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i~~---------~aD~i~v 153 (300)
T TIGR00750 83 GDRTRMQRLATDPGAFIRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQSEVDIAN---------MADTFVV 153 (300)
T ss_pred ccchhhhhcccCCCceeeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHHHH---------hhceEEE
Confidence 1111 11111211111 111122334456677777778999999999998876665432 5677777
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
|.-|.++.|.... ...+ .. ..+.+++||+|..
T Consensus 154 v~~~~~~~el~~~----~~~l---~~-----~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 154 VTIPGTGDDLQGI----KAGL---ME-----IADIYVVNKADGE 185 (300)
T ss_pred EecCCccHHHHHH----HHHH---hh-----hccEEEEEccccc
Confidence 7667777554322 1222 11 2357999999986
No 421
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.14 E-value=5e-11 Score=127.89 Aligned_cols=149 Identities=22% Similarity=0.226 Sum_probs=96.4
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEE----Ecc-cccCccchhhhhHhhhhcc---------------c
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM----MAA-CDTFRSGAVEQLRTHARRL---------------Q 438 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~----l~~-~Dt~RigaveQL~~~~~~l---------------~ 438 (589)
.+|+ +++|+|+||.||||.++.|||.++|+=|+.- |.. .+-||- -+|..|...+ .
T Consensus 98 r~G~--V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrG---tELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 98 RPGK--VVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRG---TELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCc--EEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhh---hHHHHHHHHHHcCCcceecchHHHHH
Confidence 4777 9999999999999999999999999876532 110 011331 1122222222 1
Q ss_pred cceeccCC------CCCHHHHHHHHHHHhcccCCCc-cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 439 VPIFEKGY------EKDPAIVAKEAIQEATRNGSDV-VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 439 v~l~~~~~------~~d~~~ia~~al~~a~l~~~d~-vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+|-+.++. ..|......+.++.+++.+.-. -+-+.|||+.||++|+.++.+ +.|+.+| |||++-||.
T Consensus 173 iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~r-----dADvY~F-DEpsSyLDi 246 (591)
T COG1245 173 IPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLR-----DADVYFF-DEPSSYLDI 246 (591)
T ss_pred HHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhc-----cCCEEEE-cCCcccccH
Confidence 11111111 1122234556677777766533 334559999999999999997 9999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
..+... .+.++++++. +..++++.+ |.
T Consensus 247 ~qRl~~-ar~Irel~~~----~k~ViVVEH-DL 273 (591)
T COG1245 247 RQRLNA-ARVIRELAED----GKYVIVVEH-DL 273 (591)
T ss_pred HHHHHH-HHHHHHHhcc----CCeEEEEec-hH
Confidence 866544 3777777754 344455444 65
No 422
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.14 E-value=2.5e-10 Score=112.17 Aligned_cols=188 Identities=19% Similarity=0.197 Sum_probs=122.9
Q ss_pred HhcCcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCcc---------------
Q 007789 360 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--------------- 424 (589)
Q Consensus 360 ~il~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Ri--------------- 424 (589)
++.++...+.+++.++++++.|+ +-++||.+|+|||-..+.|+|..+.+ .+...|-||.
T Consensus 12 E~~TsqG~vK~VD~v~ltlnEGE--i~GLVGESGSGKSLiAK~Ic~v~kdn----W~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 12 EFKTSQGWVKAVDRVSMTLNEGE--IRGLVGESGSGKSLIAKAICGVNKDN----WRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred EEecCCCceEeeeeeeeeeccce--eeeeeccCCCchhHHHHHHhcccccc----eEEEhhhcccccchhhcCChHHhhh
Confidence 45567777899999999999999 99999999999999999999977643 2233444443
Q ss_pred ------chhhhhH--------hhhhcc--ccceec-cC--C--CCCHHHHHHHHHHHhcccCCC----ccccccCccccc
Q 007789 425 ------GAVEQLR--------THARRL--QVPIFE-KG--Y--EKDPAIVAKEAIQEATRNGSD----VVLVDTAGRMQD 479 (589)
Q Consensus 425 ------gaveQL~--------~~~~~l--~v~l~~-~~--~--~~d~~~ia~~al~~a~l~~~d----~vliDTSGg~qq 479 (589)
++++|.+ .++..+ ++|.+. .+ . -......|-+.+.++++.+.. -++....-|+-|
T Consensus 86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~Q 165 (330)
T COG4170 86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQ 165 (330)
T ss_pred hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcce
Confidence 3444432 112221 333211 00 0 001224455566666665432 344555778899
Q ss_pred cHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHh
Q 007789 480 NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVS 559 (589)
Q Consensus 480 r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~ 559 (589)
++.+|.|++ ++|.+++. ||||..+++..+++.| ..|..+... .-+.|+++-.|.. +....
T Consensus 166 KVMIA~A~A-----nqPrLLIA-DEPTN~~e~~Tq~Qif-RLLs~mNQn----~~TtILL~s~Dl~---------~is~W 225 (330)
T COG4170 166 KVMIAIALA-----NQPRLLIA-DEPTNSMEPTTQAQIF-RLLSRLNQN----SNTTILLISHDLQ---------MISQW 225 (330)
T ss_pred eeeeehhhc-----cCCceEec-cCCCcccCccHHHHHH-HHHHHhhcc----CCceEEEEcccHH---------HHHHH
Confidence 999999999 59999998 9999999999999888 677666544 3355666666753 22233
Q ss_pred CCCEEEEecCCCcc
Q 007789 560 GAPVMFVGCGQSYT 573 (589)
Q Consensus 560 g~PI~fig~Gq~v~ 573 (589)
.-.|..+=+||+++
T Consensus 226 ~d~i~VlYCGQ~~E 239 (330)
T COG4170 226 ADKINVLYCGQTVE 239 (330)
T ss_pred hhheEEEEeccccc
Confidence 33444444567664
No 423
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.11 E-value=6.5e-10 Score=120.68 Aligned_cols=193 Identities=19% Similarity=0.209 Sum_probs=133.3
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-Cc----------cchhhhhH-----
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-FR----------SGAVEQLR----- 431 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-~R----------igaveQL~----- 431 (589)
.+.+++|||.+..|+ |++|.|+.|-|-+.|+..|+|+.++..|+|.+.|+|. -| +|+|+..+
T Consensus 271 ~~~v~~vs~~Vr~GE--IvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Gl 348 (501)
T COG3845 271 VTAVKDVSFEVRAGE--IVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348 (501)
T ss_pred CceeeeeeeEEecCc--EEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcc
Confidence 356899999999999 9999999999999999999999988889999999995 11 56666555
Q ss_pred ----hhhhccccc------eeccCCCCCH---HHHHHHHHHHhcccCC-Ccccccc-CccccccHHHHHHHHhhhhhcCC
Q 007789 432 ----THARRLQVP------IFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDT-AGRMQDNEPLMRALSKLIYLNNP 496 (589)
Q Consensus 432 ----~~~~~l~v~------l~~~~~~~d~---~~ia~~al~~a~l~~~-d~vliDT-SGg~qqr~~LaraL~kl~~~~~P 496 (589)
++++++-+. ++..+ --+. ...+.++++.+..... ...++.+ |||.+|++-++|+|.. +|
T Consensus 349 v~~~sl~eN~vL~~~~~~~~~~~g-~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~-----~p 422 (501)
T COG3845 349 VLDLSLAENLVLGRHDKKPFSRGG-FLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELAR-----RP 422 (501)
T ss_pred ccCccHHHHhhhhhcccccccccc-ccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhcc-----CC
Confidence 122332111 11111 1222 2445566666555422 2333555 9999999999999995 99
Q ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc--c
Q 007789 497 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--D 574 (589)
Q Consensus 497 dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~--D 574 (589)
+++++ ..||-|||.-+. ..+++.|.+.++.+.. -.+|.+.+|++ ++++. .|.-+-.|.-+. +
T Consensus 423 ~lLI~-~qPTrGLDvgA~-~~I~~~l~e~r~~G~A---VLLiS~dLDEi-------l~lsD----rIaVi~~Gri~~~~~ 486 (501)
T COG3845 423 DLLIA-AQPTRGLDVGAI-EFIHERLLELRDAGKA---VLLISEDLDEI-------LELSD----RIAVIYEGRIVGIVP 486 (501)
T ss_pred CEEEE-cCCCccccHHHH-HHHHHHHHHHHhcCCE---EEEEehhHHHH-------HHhhh----eeeeeeCCceecccc
Confidence 99998 999999998764 5666777777766422 22555667775 44433 455566666554 5
Q ss_pred ccCCCHHHHH
Q 007789 575 LKKLNVKSIV 584 (589)
Q Consensus 575 L~~~~~~~~v 584 (589)
-+.++++.+-
T Consensus 487 ~~~~t~~~iG 496 (501)
T COG3845 487 PEEATREEIG 496 (501)
T ss_pred cccCCHHHHH
Confidence 5556666654
No 424
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.09 E-value=4.1e-10 Score=109.24 Aligned_cols=129 Identities=15% Similarity=0.109 Sum_probs=77.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc-----ccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA-----ACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 459 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~-----~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~ 459 (589)
+.+|+||||+|||+++..|+..+-....+.... ..+..|.+ .....|.+.....
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~f~~~------------- 82 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAG--------INSASVEITFDKS------------- 82 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCC--------CceEEEEEEEECc-------------
Confidence 899999999999999999987543222111100 01111111 1112222211100
Q ss_pred HhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEE
Q 007789 460 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 539 (589)
Q Consensus 460 ~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIl 539 (589)
++-....+...+ .|||+++++.|+++|+. ....+|+++++ |||++++|+..+...+ +.+..+... +.+.+++
T Consensus 83 ~~~~~~~~~~~~-LS~Ge~~r~~Laral~~-~~~~~p~llil-DEp~~~LD~~~~~~i~-~~L~~~~~~----g~tiIii 154 (178)
T cd03239 83 YFLVLQGKVEQI-LSGGEKSLSALALIFAL-QEIKPSPFYVL-DEIDAALDPTNRRRVS-DMIKEMAKH----TSQFIVI 154 (178)
T ss_pred eEEecCCcCccc-CCHHHHHHHHHHHHHHH-hcCCCCCEEEE-ECCCCCCCHHHHHHHH-HHHHHHHhC----CCEEEEE
Confidence 111222333333 79999999999999862 01137899888 9999999999875444 667666532 4667777
Q ss_pred ccc
Q 007789 540 TKF 542 (589)
Q Consensus 540 TKl 542 (589)
|+-
T Consensus 155 SH~ 157 (178)
T cd03239 155 TLK 157 (178)
T ss_pred ECC
Confidence 763
No 425
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.09 E-value=3.3e-10 Score=139.75 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=55.6
Q ss_pred HHHHhcccCC--CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007789 457 AIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 534 (589)
Q Consensus 457 al~~a~l~~~--d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~i 534 (589)
+++.+++..+ +..+...||||+||+.|+++|+. +..+|+++|| ||||+|||+.+....+ +.|..+.+. +.
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~--~~~~P~LLIL-DEPTsGLD~~~~~~Ll-~lL~~L~~~----G~ 863 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLA--PSKKPTLYVL-DEPTTGLHTHDIKALI-YVLQSLTHQ----GH 863 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhh--cCCCCCEEEE-eCCCCCCCHHHHHHHH-HHHHHHHhc----CC
Confidence 4555566543 33334459999999999999972 1138999998 9999999999875444 777777643 66
Q ss_pred cEEEEcc
Q 007789 535 DGILLTK 541 (589)
Q Consensus 535 t~IIlTK 541 (589)
++|++|+
T Consensus 864 TVIiIsH 870 (1809)
T PRK00635 864 TVVIIEH 870 (1809)
T ss_pred EEEEEeC
Confidence 7777776
No 426
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.08 E-value=2.4e-10 Score=121.51 Aligned_cols=177 Identities=21% Similarity=0.270 Sum_probs=118.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHh--------HhhCCcEEEEccccc--CccchhhhhHhhhhccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--------LLQHKVSVMMAACDT--FRSGAVEQLRTHARRLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl--------l~~~~GkV~l~~~Dt--~RigaveQL~~~~~~l~ 438 (589)
-+|+++++.+++|+ +++++|++|+||||++++|+|. ++|++|.|.+-..-+ -++|-.+- .+. +
T Consensus 397 yvlr~vNL~ikpGd--vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep--~f~---~ 469 (593)
T COG2401 397 YVLRNLNLEIKPGD--VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEP--EFG---E 469 (593)
T ss_pred eeeeceeeEecCCC--eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCccccc--ccC---c
Confidence 47999999999999 9999999999999999999984 367888887642211 12222221 111 1
Q ss_pred cceeccCC-CCCHHHHHHHHHHHhcccC---CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 439 VPIFEKGY-EKDPAIVAKEAIQEATRNG---SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 439 v~l~~~~~-~~d~~~ia~~al~~a~l~~---~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
+.+..... ...+...+.+++..+++.+ +...+-+.|-|++.|..||+.|+. .|.+++. ||..+-||....
T Consensus 470 ~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae-----rpn~~~i-DEF~AhLD~~TA 543 (593)
T COG2401 470 VTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE-----RPNVLLI-DEFAAHLDELTA 543 (593)
T ss_pred hhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc-----CCCcEEh-hhhhhhcCHHHH
Confidence 11111100 1112244566788877765 234556779999999999999994 8888887 999999999876
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCC
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 571 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~ 571 (589)
.+.. ..|.+++. ..++|.+++|.--++ +.+|. --.+.|+|.|..
T Consensus 544 ~rVA-rkiselaR---e~giTlivvThrpEv----~~AL~-----PD~li~vgYg~v 587 (593)
T COG2401 544 VRVA-RKISELAR---EAGITLIVVTHRPEV----GNALR-----PDTLILVGYGKV 587 (593)
T ss_pred HHHH-HHHHHHHH---HhCCeEEEEecCHHH----HhccC-----CceeEEeecccc
Confidence 4333 45555554 449999999985543 33331 234777887754
No 427
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.07 E-value=4.1e-10 Score=123.81 Aligned_cols=163 Identities=12% Similarity=0.074 Sum_probs=105.7
Q ss_pred cCcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc-cCccchhhhhH-----hhhh
Q 007789 362 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-TFRSGAVEQLR-----THAR 435 (589)
Q Consensus 362 l~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D-t~RigaveQL~-----~~~~ 435 (589)
.+|....-++++++|.+++|. .+.|+||||+|||.|++.|+|+-+-.+|++..-+.- +..+=+++|-+ ++.+
T Consensus 442 ~tPt~g~~lie~Ls~~V~~g~--~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRd 519 (659)
T KOG0060|consen 442 STPTNGDLLIENLSLEVPSGQ--NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRD 519 (659)
T ss_pred cCCCCCceeeeeeeeEecCCC--eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhh
Confidence 345544456788999999999 999999999999999999999888888888654321 01133556644 3334
Q ss_pred ccccceecc---CCCCCHHHHHHHHHHHhccc-------CCC----cccccc-CccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 436 RLQVPIFEK---GYEKDPAIVAKEAIQEATRN-------GSD----VVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 436 ~l~v~l~~~---~~~~d~~~ia~~al~~a~l~-------~~d----~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
.+-.|.-.. ..+.+. ..+.+.++.+++. ++| .--.|+ |+|++||.++||-+- ++|.+.+
T Consensus 520 QvIYP~~~~~~~~~~~~d-~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy-----~kPk~Ai 593 (659)
T KOG0060|consen 520 QVIYPLKAEDMDSKSASD-EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY-----HKPKFAI 593 (659)
T ss_pred eeeccCccccccccCCCH-HHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh-----cCCceEE
Confidence 433332111 111122 2334455544332 333 223566 999999999999888 5999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||.|++++.......+ +.+ +..+||-|-+.+
T Consensus 594 L-DE~TSAv~~dvE~~~Y-r~~-------r~~giT~iSVgH 625 (659)
T KOG0060|consen 594 L-DECTSAVTEDVEGALY-RKC-------REMGITFISVGH 625 (659)
T ss_pred e-echhhhccHHHHHHHH-HHH-------HHcCCeEEEecc
Confidence 9 9999999876442222 333 234777666544
No 428
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.07 E-value=1.7e-10 Score=113.48 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=72.2
Q ss_pred cccccCCceEEEEEecCCCcHHHHHHHHHH-hHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHH
Q 007789 376 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAY-WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 454 (589)
Q Consensus 376 ~~i~~Gep~iI~LVGpNGvGKTTlLakLAg-ll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia 454 (589)
+.+..|+ +++|+||||+||||+++.|++ .+..+.|... -+...++++.+|+..+.. ..+
T Consensus 24 ~~l~~~~--~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~--~~~~~~i~~~dqi~~~~~-----------~~d----- 83 (202)
T cd03243 24 INLGSGR--LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV--PAESASIPLVDRIFTRIG-----------AED----- 83 (202)
T ss_pred EEEcCCe--EEEEECCCCCccHHHHHHHHHHHHHHHcCCCc--cccccccCCcCEEEEEec-----------Ccc-----
Confidence 4445777 999999999999999999995 4434333221 122233444333211110 000
Q ss_pred HHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007789 455 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 534 (589)
Q Consensus 455 ~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~i 534 (589)
.....+-..++++++ ...+.++. .+|+++|+ |||++|+|+..........+..+... +.
T Consensus 84 ----------~i~~~~s~~~~e~~~-l~~i~~~~-----~~~~llll-DEp~~gld~~~~~~l~~~ll~~l~~~----~~ 142 (202)
T cd03243 84 ----------SISDGRSTFMAELLE-LKEILSLA-----TPRSLVLI-DELGRGTSTAEGLAIAYAVLEHLLEK----GC 142 (202)
T ss_pred ----------cccCCceeHHHHHHH-HHHHHHhc-----cCCeEEEE-ecCCCCCCHHHHHHHHHHHHHHHHhc----CC
Confidence 000001111444444 22222333 37888887 99999999987755444445544432 66
Q ss_pred cEEEEcccccc
Q 007789 535 DGILLTKFDTI 545 (589)
Q Consensus 535 t~IIlTKlD~~ 545 (589)
+++++|+..+.
T Consensus 143 ~vi~~tH~~~~ 153 (202)
T cd03243 143 RTLFATHFHEL 153 (202)
T ss_pred eEEEECChHHH
Confidence 78888886554
No 429
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.03 E-value=7.1e-10 Score=110.54 Aligned_cols=91 Identities=16% Similarity=0.095 Sum_probs=54.9
Q ss_pred cccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccc
Q 007789 469 VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDK 548 (589)
Q Consensus 469 vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k 548 (589)
.+-+.||||+|+..++.+|+. ....+|+++|+ |||++|+|+......+ +.+..+.... ...+.+++|.....
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~-~~~~~p~llll-DEP~~~LD~~~~~~i~-~~l~~~~~~~--g~~~viiith~~~~--- 194 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSL-QELTRCPFRVV-DEINQGMDPTNERKVF-DMLVETACKE--GTSQYFLITPKLLP--- 194 (213)
T ss_pred chhhccccHHHHHHHHHHHHH-HhccCCCEEEE-ecccccCCHHHHHHHH-HHHHHHhhcC--CCceEEEEchhhcc---
Confidence 334559999998776655431 11248998887 9999999999875444 6666664321 12456777753211
Q ss_pred hhhhhHhHHHhCCCEEEEecCCCc
Q 007789 549 VGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 549 ~G~als~~~~~g~PI~fig~Gq~v 572 (589)
.+..+ -..-|.++..|.++
T Consensus 195 ---~~~~~--~~~~v~~l~~g~~~ 213 (213)
T cd03277 195 ---GLNYH--EKMTVLCVYNGPHI 213 (213)
T ss_pred ---CCccc--CceEEEEEecCccC
Confidence 11111 12267777777753
No 430
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.02 E-value=1.5e-09 Score=103.26 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=76.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
.+++|+||||+||||+++.++..+-...+++.- ..+. +.|. .++.....
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~-~~g~-----------~~~~~~~~------------------ 70 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV-KAGC-----------IVAAVSAE------------------ 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc-cCCC-----------cceeeEEE------------------
Confidence 499999999999999999998876665554433 1111 1110 01100000
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
+-...+..|+|++++..++++|.. ....+|+++|+ |||+.|+|+.+..... +.+.++... +.+.+++|+..
T Consensus 71 --~i~~~~~lS~G~~~~~~la~~L~~-~~~~~~~llll-DEp~~gld~~~~~~l~-~~l~~~~~~----~~~vii~TH~~ 141 (162)
T cd03227 71 --LIFTRLQLSGGEKELSALALILAL-ASLKPRPLYIL-DEIDRGLDPRDGQALA-EAILEHLVK----GAQVIVITHLP 141 (162)
T ss_pred --EehheeeccccHHHHHHHHHHHHh-cCCCCCCEEEE-eCCCCCCCHHHHHHHH-HHHHHHHhc----CCEEEEEcCCH
Confidence 001112369999999999999983 11126788887 9999999999875444 555555432 55678888755
Q ss_pred c
Q 007789 544 T 544 (589)
Q Consensus 544 ~ 544 (589)
+
T Consensus 142 ~ 142 (162)
T cd03227 142 E 142 (162)
T ss_pred H
Confidence 4
No 431
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.00 E-value=6e-10 Score=110.48 Aligned_cols=135 Identities=22% Similarity=0.268 Sum_probs=80.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-CCcEEEEcccccCccchhhhhHhhhhccccceeccCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 447 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~ 447 (589)
-+.+++++....|+ +++|+||||+||||+++.|+++..- +-| + |=++ ....++++.
T Consensus 17 ~v~~~~~~~~~~~~--~~~l~G~n~~GKstll~~i~~~~~la~~G------~--~vpa---------~~~~l~~~d---- 73 (204)
T cd03282 17 FIPNDIYLTRGSSR--FHIITGPNMSGKSTYLKQIALLAIMAQIG------C--FVPA---------EYATLPIFN---- 73 (204)
T ss_pred EEEeeeEEeeCCCc--EEEEECCCCCCHHHHHHHHHHHHHHHHcC------C--Ccch---------hhcCccChh----
Confidence 46789999998888 9999999999999999999986411 101 1 0001 111111110
Q ss_pred CCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhh
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 526 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~ 526 (589)
+++..++..+.-.....+ ++++++...+ .+++ .+|+++|+ |||+.|+|+.+....+...+..+.
T Consensus 74 --------~I~~~~~~~d~~~~~~S~fs~e~~~~~~i-l~~~-----~~~~lvll-DE~~~gt~~~~~~~l~~~il~~l~ 138 (204)
T cd03282 74 --------RLLSRLSNDDSMERNLSTFASEMSETAYI-LDYA-----DGDSLVLI-DELGRGTSSADGFAISLAILECLI 138 (204)
T ss_pred --------heeEecCCccccchhhhHHHHHHHHHHHH-HHhc-----CCCcEEEe-ccccCCCCHHHHHHHHHHHHHHHH
Confidence 111111111111122333 6666654322 2233 37777777 999999999887666656666665
Q ss_pred cCCCCCCccEEEEcccccc
Q 007789 527 SSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 527 ~~~~~~~it~IIlTKlD~~ 545 (589)
+. +..+++.|+..+.
T Consensus 139 ~~----~~~~i~~TH~~~l 153 (204)
T cd03282 139 KK----ESTVFFATHFRDI 153 (204)
T ss_pred hc----CCEEEEECChHHH
Confidence 43 6778888886654
No 432
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.00 E-value=1e-09 Score=129.78 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=47.1
Q ss_pred cccCccccccHHHHHHHHhhhhhcCC---CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 471 VDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 471 iDTSGg~qqr~~LaraL~kl~~~~~P---dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
-..||||+|++.|+++|.. +| +++|| ||||+|||+.++. .+.+.|..+.+. +.++|++|+
T Consensus 829 ~tLSgGEkQRl~LAraL~~-----~p~~~~llIL-DEPtsGLD~~~~~-~L~~~L~~l~~~----G~TVIiitH 891 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSK-----RSTGKTLYIL-DEPTTGLHFEDIR-KLLEVLHRLVDK----GNTVVVIEH 891 (943)
T ss_pred ccCCHHHHHHHHHHHHHhc-----CCCCCeEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEec
Confidence 3349999999999999994 77 77776 9999999999875 444777777543 567777777
No 433
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=3.3e-09 Score=125.32 Aligned_cols=64 Identities=20% Similarity=0.164 Sum_probs=48.1
Q ss_pred cccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 470 LVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 470 liDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.+ ||||+||+.|+++|.. +..+|+++|| ||||+|||+.++. .+.+.|..+.+. +.+.|++|+
T Consensus 825 ~~~tLSgGe~QRl~LA~aL~~--~~~~p~llIL-DEPtsgLD~~~~~-~L~~~L~~l~~~----G~TVIvi~H 889 (924)
T TIGR00630 825 PATTLSGGEAQRIKLAKELSK--RSTGRTLYIL-DEPTTGLHFDDIK-KLLEVLQRLVDQ----GNTVVVIEH 889 (924)
T ss_pred ccccCCHHHHHHHHHHHHHhh--cCCCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEeC
Confidence 3444 9999999999999983 0114888887 9999999999874 444777777643 567777776
No 434
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.2e-09 Score=116.47 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=93.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHH--hHhhCCcEEEEccccc----------------Cccchhhhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSVMMAACDT----------------FRSGAVEQL 430 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAg--ll~~~~GkV~l~~~Dt----------------~RigaveQL 430 (589)
.++-+.++.|-.|+ .+++|||||-||||||+.|+. +-.|..-.|++....+ .|...++..
T Consensus 278 ~LFvnA~L~Iv~GR--RYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee 355 (807)
T KOG0066|consen 278 LLFVNASLTIVYGR--RYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEE 355 (807)
T ss_pred eeeeccceEEEecc--eecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHH
Confidence 45667778888899 999999999999999999995 5456566777654432 233222221
Q ss_pred Hh-----------hhhcccccee-ccCCCCC-HHHHHHHHHHHhcccC-CCccccc-cCccccccHHHHHHHHhhhhhcC
Q 007789 431 RT-----------HARRLQVPIF-EKGYEKD-PAIVAKEAIQEATRNG-SDVVLVD-TAGRMQDNEPLMRALSKLIYLNN 495 (589)
Q Consensus 431 ~~-----------~~~~l~v~l~-~~~~~~d-~~~ia~~al~~a~l~~-~d~vliD-TSGg~qqr~~LaraL~kl~~~~~ 495 (589)
.. .+++|.-.+- .+..+.+ +...+.+++.-++... ....+.. -|||-+-|+.|+|+|- +.
T Consensus 356 ~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALf-----lE 430 (807)
T KOG0066|consen 356 AKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALF-----LE 430 (807)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHh-----cC
Confidence 11 1222210000 0111111 2234555555443321 2233433 3999999999999999 69
Q ss_pred CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 496 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 496 PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|.+++| ||||..||.-.. --++..|.-+ ..|.+|+++
T Consensus 431 PTLLML-DEPTNHLDLNAV-IWLdNYLQgW-------kKTLLIVSH 467 (807)
T KOG0066|consen 431 PTLLML-DEPTNHLDLNAV-IWLDNYLQGW-------KKTLLIVSH 467 (807)
T ss_pred ceeeee-cCCcccccccee-eehhhHHhhh-------hheeEEEec
Confidence 998887 999999996432 1222333222 345577776
No 435
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=2.2e-09 Score=116.86 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=97.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhcccc---ceeccCCCCCHHHHHHHHHHHh
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV---PIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v---~l~~~~~~~d~~~ia~~al~~a 461 (589)
.+++||+||.||||+++.+.+-+.|..|-+.+... .|+++..|-..-.-.+++ .+....+...+.+.+.+.+..+
T Consensus 392 Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r--~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~ 469 (582)
T KOG0062|consen 392 RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR--LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSF 469 (582)
T ss_pred hhheeccCchhHHHHHHHHhccCCcccceeeeccc--ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhc
Confidence 68999999999999999999999998887777653 578888775432212222 2222333222445566677777
Q ss_pred cccCC-Cccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEE
Q 007789 462 TRNGS-DVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 539 (589)
Q Consensus 462 ~l~~~-d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIl 539 (589)
++.+- ....+. .||||+-|+.+|.... ++|++++| ||||+.||.... ..+-++|..+. =.+|++
T Consensus 470 Gl~g~la~~si~~LSGGQKsrvafA~~~~-----~~PhlLVL-DEPTNhLD~dsl-~AL~~Al~~F~-------GGVv~V 535 (582)
T KOG0062|consen 470 GLSGELALQSIASLSGGQKSRVAFAACTW-----NNPHLLVL-DEPTNHLDRDSL-GALAKALKNFN-------GGVVLV 535 (582)
T ss_pred CCCchhhhccccccCCcchhHHHHHHHhc-----CCCcEEEe-cCCCccccHHHH-HHHHHHHHhcC-------CcEEEE
Confidence 77642 223344 4999999999998777 59999998 999999997653 44445555442 234666
Q ss_pred cc
Q 007789 540 TK 541 (589)
Q Consensus 540 TK 541 (589)
|+
T Consensus 536 SH 537 (582)
T KOG0062|consen 536 SH 537 (582)
T ss_pred EC
Confidence 66
No 436
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.94 E-value=6.4e-09 Score=98.03 Aligned_cols=138 Identities=25% Similarity=0.272 Sum_probs=83.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc---cchhhhhHhhhhcc----ccce--ecc-CCCCCHHHHH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAVEQLRTHARRL----QVPI--FEK-GYEKDPAIVA 454 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R---igaveQL~~~~~~l----~v~l--~~~-~~~~d~~~ia 454 (589)
+++++|++||||||++..|+.++.+.+++|.+..+|..+ .+.+...+...+.. ++.+ ... ..........
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence 378999999999999999999999999999999999732 23222111111111 1111 111 1111223344
Q ss_pred HHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007789 455 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 534 (589)
Q Consensus 455 ~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~i 534 (589)
.++++.+...++|+++|||+|..+.... .+. ..|.+++|--|. -.|+....+. .. ...-
T Consensus 81 ~~~~~~~~~~~~D~iiIDtaG~~~~~~~---~~~------~Ad~~ivv~tpe-~~D~y~~~k~--~~---------~~~~ 139 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEVD---IAS------MADTTVVVMAPG-AGDDIQAIKA--GI---------MEIA 139 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCccChhhhh---HHH------hCCEEEEEECCC-chhHHHHhhh--hH---------hhhc
Confidence 5566666667899999999887654432 233 667777766665 2344332110 11 1245
Q ss_pred cEEEEcccc
Q 007789 535 DGILLTKFD 543 (589)
Q Consensus 535 t~IIlTKlD 543 (589)
+.++++|.|
T Consensus 140 ~~~~~~k~~ 148 (148)
T cd03114 140 DIVVVNKAD 148 (148)
T ss_pred CEEEEeCCC
Confidence 779999987
No 437
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.90 E-value=4.2e-09 Score=107.10 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=92.3
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc---CccchhhhhHhhhhc----cccceeccCCCC---C
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---FRSGAVEQLRTHARR----LQVPIFEKGYEK---D 449 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt---~RigaveQL~~~~~~----l~v~l~~~~~~~---d 449 (589)
.|+.++|+|.||+|||||||+..|...+...+.+|.+.+.|+ |.-|++--.++-... -++-+....... -
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 466789999999999999999999998888899999999997 445565444432222 233222211111 1
Q ss_pred HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
....+.+++..+...+||+++|.|.|--|..+.++. -.|.+++|--|-.|-+... ++.-+.++
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~---------~aD~~v~v~~Pg~GD~iQ~----~KaGimEi---- 168 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIAD---------MADTVVLVLVPGLGDEIQA----IKAGIMEI---- 168 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHT---------TSSEEEEEEESSTCCCCCT----B-TTHHHH----
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHH---------hcCeEEEEecCCCccHHHH----Hhhhhhhh----
Confidence 335566778888888999999999998888887764 6678888888999977432 22333333
Q ss_pred CCCCccEEEEccccc
Q 007789 530 NPQLIDGILLTKFDT 544 (589)
Q Consensus 530 ~~~~it~IIlTKlD~ 544 (589)
-|.++++|+|.
T Consensus 169 ----aDi~vVNKaD~ 179 (266)
T PF03308_consen 169 ----ADIFVVNKADR 179 (266)
T ss_dssp -----SEEEEE--SH
T ss_pred ----ccEEEEeCCCh
Confidence 36799999995
No 438
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.88 E-value=1.6e-09 Score=105.32 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=72.7
Q ss_pred EEEEEecCCCcHHHHHHHHH-HhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 385 VVVFVGVNGVGKSTNLAKVA-YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLA-gll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
+++|+||||+||||+++.|+ ..+..+.|.... ++.++++.++++... ++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~--a~~~~~~~~d~il~~---~~~------------------------ 51 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVP--AESAELPVFDRIFTR---IGA------------------------ 51 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCee--ehheEecccceEEEE---eCC------------------------
Confidence 46899999999999999999 555555554322 233455554433110 110
Q ss_pred cCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 464 NGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 464 ~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
.+.......+ ++++++ +++++.. ..+|+++|+ |||++|+|+.+....+...+..+.+. .+.+.++.|+.
T Consensus 52 ~d~~~~~~s~fs~~~~~---l~~~l~~---~~~~~llll-DEp~~g~d~~~~~~~~~~~l~~l~~~---~~~~iii~TH~ 121 (185)
T smart00534 52 SDSLAQGLSTFMVEMKE---TANILKN---ATENSLVLL-DELGRGTSTYDGVAIAAAVLEYLLEK---IGALTLFATHY 121 (185)
T ss_pred CCchhccccHHHHHHHH---HHHHHHh---CCCCeEEEE-ecCCCCCCHHHHHHHHHHHHHHHHhc---CCCeEEEEecH
Confidence 0000111223 556554 3433331 137888887 99999999998766665666655532 25677888886
Q ss_pred ccc
Q 007789 543 DTI 545 (589)
Q Consensus 543 D~~ 545 (589)
.+.
T Consensus 122 ~~l 124 (185)
T smart00534 122 HEL 124 (185)
T ss_pred HHH
Confidence 654
No 439
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.88 E-value=5.5e-09 Score=124.12 Aligned_cols=189 Identities=17% Similarity=0.191 Sum_probs=123.0
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC---CcEEEEcccccC------ccchhhhhHhhhhcc
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTF------RSGAVEQLRTHARRL 437 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~---~GkV~l~~~Dt~------RigaveQL~~~~~~l 437 (589)
.+.+|++++.-+++|+ .+.++||+|+||||+|+.|+|-+... .|+|..+|.|.- -+++..|.-.|...|
T Consensus 127 ~~~il~~~sg~~~pg~--m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGE--MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCcceeEcCCc--eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee
Confidence 3679999999999999 99999999999999999999855432 358999998762 267777877776666
Q ss_pred ccc----eec--c----CCC-CCHH----HHHHHHHHHhcccCCCcccc------ccCccccccHHHHHHHHhhhhhcCC
Q 007789 438 QVP----IFE--K----GYE-KDPA----IVAKEAIQEATRNGSDVVLV------DTAGRMQDNEPLMRALSKLIYLNNP 496 (589)
Q Consensus 438 ~v~----l~~--~----~~~-~d~~----~ia~~al~~a~l~~~d~vli------DTSGg~qqr~~LaraL~kl~~~~~P 496 (589)
.|. +.. + .+. .+.. .+.+.+++.+++......++ .-|||+++|+.++..++ .|
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v------~~ 278 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV------GP 278 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee------cC
Confidence 442 110 1 111 1111 14556777788765432222 22999999999999888 45
Q ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEec
Q 007789 497 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGC 568 (589)
Q Consensus 497 dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~ 568 (589)
..+++.||+|.|||.....+.. +.++.++... + +..+++...-..+.+-..--++.....+++|.|.
T Consensus 279 ~~~~~~De~t~GLDSsTal~ii-k~lr~~a~~~---~-~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp 345 (1391)
T KOG0065|consen 279 ASILFWDEITRGLDSSTAFQII-KALRQLAHIT---G-ATALVSILQPSPEIYDLFDDVILLSEGYQIYQGP 345 (1391)
T ss_pred cceeeeecccccccHHHHHHHH-HHHHHHHhhh---c-ceEEEEeccCChHHHHhhhheeeeeccceEEecc
Confidence 4555559999999999876555 6777776543 2 2244444433322222222223334556666664
No 440
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.86 E-value=4.5e-09 Score=114.58 Aligned_cols=188 Identities=16% Similarity=0.155 Sum_probs=115.2
Q ss_pred cCcccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhh-----hc
Q 007789 362 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA-----RR 436 (589)
Q Consensus 362 l~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~-----~~ 436 (589)
.+|...+ ++..++|.+++|- -+.|+||||||||++.+.|+|+-+-..|...+-. ..++=+++|-+... +.
T Consensus 490 ItP~~~v-vv~~Ltf~i~~G~--hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~--~~~mFYIPQRPYms~gtlRDQ 564 (728)
T KOG0064|consen 490 ITPAGDV-LVPKLTFQIEPGM--HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR--PNNIFYIPQRPYMSGGTLRDQ 564 (728)
T ss_pred eccCcce-eecceeEEecCCc--eEEEECCCCccHHHHHHHHhccCcccCCeeecCC--CcceEeccCCCccCcCcccce
Confidence 4455443 5678899999998 9999999999999999999998777666544422 23466777765432 22
Q ss_pred cc-----cceeccCCCCCHHHHHHHH--HHHh-c-ccCCCccc--ccc-CccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 437 LQ-----VPIFEKGYEKDPAIVAKEA--IQEA-T-RNGSDVVL--VDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 437 l~-----v~l~~~~~~~d~~~ia~~a--l~~a-~-l~~~d~vl--iDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
+- ..+..++++......+-.. +++. . ..++|.+. -|. |||++||+.+||.+- +.|...+| ||
T Consensus 565 IIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y-----HrPkyalL-DE 638 (728)
T KOG0064|consen 565 IIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY-----HRPKYALL-DE 638 (728)
T ss_pred eecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHh-----cCcchhhh-hh
Confidence 21 1133344443222111111 1111 1 12344322 244 999999999999888 69999998 99
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCH
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNV 580 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~ 580 (589)
.|+...+.-....| ++.+ ..+|+.+-+|+=-+. +--..+... | .|+.-..++.+++
T Consensus 639 cTsAvsidvE~~i~-~~ak-------~~gi~llsithrpsl----wk~h~~ll~------~--dg~g~~q~~~ln~ 694 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIF-QAAK-------DAGISLLSITHRPSL----WKYHTHLLE------F--DGEGGWQFRALNT 694 (728)
T ss_pred hhcccccchHHHHH-HHHH-------hcCceEEEeecCccH----HHHHHHHHh------c--cCCCCeeeccCCh
Confidence 99998765555556 4443 237887877774332 222233322 3 4444446666666
No 441
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.84 E-value=2.8e-09 Score=106.99 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=81.1
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccc-hhhhhHhhhhccccceeccCCCC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG-AVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Rig-aveQL~~~~~~l~v~l~~~~~~~ 448 (589)
+.+++++....++ +++|+||||+||||+++.|+-..- ..++| +++ ++...++.
T Consensus 19 v~~~~~~~~~~~~--~~~l~G~n~~GKstll~~i~~~~~------------la~~g~~vp-----a~~~~~~~------- 72 (222)
T cd03285 19 IPNDVTLTRGKSR--FLIITGPNMGGKSTYIRQIGVIVL------------MAQIGCFVP-----CDSADIPI------- 72 (222)
T ss_pred EEeeEEEeecCCe--EEEEECCCCCChHHHHHHHHHHHH------------HHHhCCCcC-----cccEEEec-------
Confidence 5788898887788 999999999999999999983100 00111 111 11111111
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC---CCCCCHHHHHHHHHHHHHHh
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA---LVGNDAVDQLSKFNQKLADL 525 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP---t~GlD~~~q~~~f~~~l~~l 525 (589)
+.+++.++++. +...-+.|.+++++..+++.+.. ..+|+++|+ ||| |+++|+..... ..+..+
T Consensus 73 -----~~~il~~~~l~--d~~~~~lS~~~~e~~~~a~il~~---~~~~sLvLL-DEp~~gT~~lD~~~~~~---~il~~l 138 (222)
T cd03285 73 -----VDCILARVGAS--DSQLKGVSTFMAEMLETAAILKS---ATENSLIII-DELGRGTSTYDGFGLAW---AIAEYI 138 (222)
T ss_pred -----cceeEeeeccc--cchhcCcChHHHHHHHHHHHHHh---CCCCeEEEE-ecCcCCCChHHHHHHHH---HHHHHH
Confidence 11222333332 22223448899998888888743 147887777 999 88899876643 233444
Q ss_pred hcCCCCCCccEEEEcccccc
Q 007789 526 SSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 526 ~~~~~~~~it~IIlTKlD~~ 545 (589)
.+. .+.++++.|++.++
T Consensus 139 ~~~---~~~~vlisTH~~el 155 (222)
T cd03285 139 ATQ---IKCFCLFATHFHEL 155 (222)
T ss_pred Hhc---CCCeEEEEechHHH
Confidence 431 25678888986543
No 442
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.81 E-value=1.5e-08 Score=101.16 Aligned_cols=126 Identities=25% Similarity=0.245 Sum_probs=73.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHH--hHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHH
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 457 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAg--ll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~a 457 (589)
.+.+.+++|+||||+||||+|+.|+. ++ ...|.+.. ++..++++.+|+.+.. + .
T Consensus 26 ~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~--a~~~~~~~~d~i~~~l---~--------~---------- 81 (213)
T cd03281 26 GGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP--ADSATIGLVDKIFTRM---S--------S---------- 81 (213)
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE--cCCcEEeeeeeeeeee---C--------C----------
Confidence 34234999999999999999999994 44 45554443 2345666666542111 0 0
Q ss_pred HHHhcccCCCcccc--ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 007789 458 IQEATRNGSDVVLV--DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 535 (589)
Q Consensus 458 l~~a~l~~~d~vli--DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it 535 (589)
.+.+.- .+-..+-+++.++..++ .+|.++|+ |||+.|+|+.+....+...+..+.+.. .....
T Consensus 82 --------~~si~~~~S~f~~el~~l~~~l~~~-----~~~slvll-DE~~~gtd~~~~~~~~~ail~~l~~~~-~~~~~ 146 (213)
T cd03281 82 --------RESVSSGQSAFMIDLYQVSKALRLA-----TRRSLVLI-DEFGKGTDTEDGAGLLIATIEHLLKRG-PECPR 146 (213)
T ss_pred --------ccChhhccchHHHHHHHHHHHHHhC-----CCCcEEEe-ccccCCCCHHHHHHHHHHHHHHHHhcC-CCCcE
Confidence 000000 11112224444454444 37777777 999999999876666656777765421 11345
Q ss_pred EEEEccccc
Q 007789 536 GILLTKFDT 544 (589)
Q Consensus 536 ~IIlTKlD~ 544 (589)
+++.|+.-.
T Consensus 147 vli~TH~~~ 155 (213)
T cd03281 147 VIVSTHFHE 155 (213)
T ss_pred EEEEcChHH
Confidence 677777444
No 443
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.81 E-value=2.7e-08 Score=101.13 Aligned_cols=160 Identities=18% Similarity=0.093 Sum_probs=89.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHh--HhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHH---HHHHHH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIV---AKEAIQ 459 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgl--l~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~i---a~~al~ 459 (589)
.+++||++|+||||+|+.|+|. +....|.|. ..++++....+...++..+.++.. .-.+..++ +.++..
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t---~~p~~i~l~~~~~~~~~~~~~~~~---~~~~~~~v~~~i~~~~~ 101 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT---RRPLILQLINSSTEYAEFLHCKGK---KFTDFDEVRNEIEAETD 101 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCccc---ccceEEEccCCCCcceEEEecCCc---ccCCHHHHHHHHHHHHH
Confidence 7899999999999999999996 444445443 445566666666666555544321 01122222 122222
Q ss_pred Hhc--------------c---cCCCccccccCccccc-----cH---HHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 460 EAT--------------R---NGSDVVLVDTAGRMQD-----NE---PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 460 ~a~--------------l---~~~d~vliDTSGg~qq-----r~---~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
.+. . .-.+..++||+|-.+. .. ..++.+..-.-....++||+|-++.+++...+.
T Consensus 102 ~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~ 181 (240)
T smart00053 102 RVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA 181 (240)
T ss_pred HhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH
Confidence 110 0 1146788999988632 12 233333321111234588888878777654432
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHH
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 558 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~ 558 (589)
. +..+.+.... .-+.+|+||+|.. .++..+++++..
T Consensus 182 l----~ia~~ld~~~---~rti~ViTK~D~~-~~~~~~~~~~~~ 217 (240)
T smart00053 182 L----KLAKEVDPQG---ERTIGVITKLDLM-DEGTDARDILEN 217 (240)
T ss_pred H----HHHHHHHHcC---CcEEEEEECCCCC-CccHHHHHHHhC
Confidence 2 2222332222 3466799999997 566556666543
No 444
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.80 E-value=1.6e-08 Score=99.87 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=33.4
Q ss_pred ccccHHHHHHHHhhhhhcCCCEEEEEecCC-----CCCCHHHHHHHHHHHHHHhhc
Q 007789 477 MQDNEPLMRALSKLIYLNNPDLVLFVGEAL-----VGNDAVDQLSKFNQKLADLSS 527 (589)
Q Consensus 477 ~qqr~~LaraL~kl~~~~~PdlILLVDEPt-----~GlD~~~q~~~f~~~l~~l~~ 527 (589)
+++...|++++.. +|+++++ |||| +|||+.... .+.+.+..++.
T Consensus 157 ~~~f~~ia~~l~~-----~p~~~~l-dEp~~~~~~~~ld~~~~~-~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTN-----DPNLVFV-GAPALAPEEIQIDPELVA-QAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhh-----cccceec-CCcccCCCccccCHHHHH-HHHHHHHHHhh
Confidence 4455788888874 8998888 9999 999999764 44466666643
No 445
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.72 E-value=7.1e-08 Score=96.98 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=83.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHH-hHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY-WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 447 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAg-ll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~ 447 (589)
-+..++++.+..|+ +++|+||||+||||+++.|++ .+.++.|..... ...++++.+|+.+..
T Consensus 19 ~v~n~i~~~~~~g~--~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a--~~~~~~~~~~i~~~~------------- 81 (222)
T cd03287 19 FVPNDIHLSAEGGY--CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA--SSATLSIFDSVLTRM------------- 81 (222)
T ss_pred EEEEeEEEEecCCc--EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc--CceEEeccceEEEEe-------------
Confidence 35788999988898 999999999999999999999 777788875543 234555554432110
Q ss_pred CCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhh-cCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhh
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL-NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 526 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~-~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~ 526 (589)
...|...-+.|--+. =|..+..+++. .+|.++|+ |||..|.++.+........+..+.
T Consensus 82 ----------------~~~d~~~~~~StF~~----e~~~~~~il~~~~~~sLvll-DE~~~gT~~~d~~~i~~~il~~l~ 140 (222)
T cd03287 82 ----------------GASDSIQHGMSTFMV----ELSETSHILSNCTSRSLVIL-DELGRGTSTHDGIAIAYATLHYLL 140 (222)
T ss_pred ----------------cCccccccccchHHH----HHHHHHHHHHhCCCCeEEEE-ccCCCCCChhhHHHHHHHHHHHHH
Confidence 000111111111111 12223333332 35666666 999999988776555556666665
Q ss_pred cCCCCCCccEEEEcccccc
Q 007789 527 SSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 527 ~~~~~~~it~IIlTKlD~~ 545 (589)
+. .+.++++.|+.-+.
T Consensus 141 ~~---~~~~~i~~TH~~~l 156 (222)
T cd03287 141 EE---KKCLVLFVTHYPSL 156 (222)
T ss_pred hc---cCCeEEEEcccHHH
Confidence 43 25678888886554
No 446
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=4e-08 Score=101.56 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=43.8
Q ss_pred cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 473 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 473 TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.|||+++++.|++++.. ....+|+++++ |||++++|+..+. .+.+.+..+.. +.+.+++|+
T Consensus 171 lS~G~~~r~~la~~~~~-~~~~~p~vlll-DEp~~~Ld~~~~~-~l~~~l~~~~~-----~~tii~isH 231 (276)
T cd03241 171 ASGGELSRLMLALKAIL-ARKDAVPTLIF-DEIDTGISGEVAQ-AVGKKLKELSR-----SHQVLCITH 231 (276)
T ss_pred cChhHHHHHHHHHHHHH-hcCCCCCEEEE-ECCccCCCHHHHH-HHHHHHHHHhC-----CCEEEEEec
Confidence 49999999999987652 00128888888 9999999999764 44466666543 456677666
No 447
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.70 E-value=9.6e-08 Score=95.49 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=29.1
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll 407 (589)
+.+++++.... + +++|+||||+||||+++.|++..
T Consensus 20 v~n~~~l~~~~-~--~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-Q--ILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-e--EEEEECCCCCChHHHHHHHHHHH
Confidence 56777777654 5 99999999999999999998743
No 448
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.68 E-value=2e-08 Score=117.24 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=79.4
Q ss_pred cccccccCCceEEEEEecCCCcHHHHHHHHHHh-HhhCCc-EEEEcccccCccchhhhhHhhhhccccceeccCCCCCHH
Q 007789 374 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPA 451 (589)
Q Consensus 374 Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl-l~~~~G-kV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~ 451 (589)
+++.+..+ ..+++|+||||+||||+|+.|++. +.+..| -|-. ....++++++|... .+ + ..
T Consensus 314 ~di~l~~~-~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa--~~~~~~~~~d~i~~-------~i-----~--~~ 376 (771)
T TIGR01069 314 FTLNLKFE-KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPA--NEHSEIPYFEEIFA-------DI-----G--DE 376 (771)
T ss_pred ceeEeCCC-ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccC--Cccccccchhheee-------ec-----C--hH
Confidence 45555555 139999999999999999999997 555555 2221 11123333332210 00 0 10
Q ss_pred HHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCC
Q 007789 452 IVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 530 (589)
Q Consensus 452 ~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~ 530 (589)
.- +. .-+.| |++|++...+++.+ ..|.++|| |||++|+|+.+........+..+..
T Consensus 377 ~s---i~----------~~LStfS~~m~~~~~il~~~------~~~sLvLl-DE~g~GtD~~eg~ala~aiLe~l~~--- 433 (771)
T TIGR01069 377 QS---IE----------QNLSTFSGHMKNISAILSKT------TENSLVLF-DELGAGTDPDEGSALAISILEYLLK--- 433 (771)
T ss_pred hH---Hh----------hhhhHHHHHHHHHHHHHHhc------CCCcEEEe-cCCCCCCCHHHHHHHHHHHHHHHHh---
Confidence 10 10 01334 88888766655543 27788877 9999999999876554556666554
Q ss_pred CCCccEEEEcccccc
Q 007789 531 PQLIDGILLTKFDTI 545 (589)
Q Consensus 531 ~~~it~IIlTKlD~~ 545 (589)
.+..+++.|++.+.
T Consensus 434 -~g~~viitTH~~eL 447 (771)
T TIGR01069 434 -QNAQVLITTHYKEL 447 (771)
T ss_pred -cCCEEEEECChHHH
Confidence 26677888886654
No 449
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.61 E-value=2.5e-07 Score=91.45 Aligned_cols=168 Identities=20% Similarity=0.271 Sum_probs=87.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhh-----hccccceeccCC-----CCCHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA-----RRLQVPIFEKGY-----EKDPAI 452 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~-----~~l~v~l~~~~~-----~~d~~~ 452 (589)
|..++|+|++|+||||+++.|.+.+.+. +.+.+...|.+.....+.+...+ +.+.+. ..+. ..+...
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~ 77 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQEDAEFLVKNSALPPERILGVE--TGGCPHTAIREDASM 77 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCChhHHHHHHHcCCCCcCceehhh--cCCCccceeccCHHH
Confidence 5689999999999999999999988775 44777777875422111111111 011110 0000 112211
Q ss_pred HHHHHHHHh--cccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCC
Q 007789 453 VAKEAIQEA--TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 530 (589)
Q Consensus 453 ia~~al~~a--~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~ 530 (589)
...++..+ ...++|.++|+|+|... ...+.. ... +.++.|-+++.+.+... .... .+
T Consensus 78 -~~~~L~~l~~~~~~~D~iiIEt~G~~l-----~~~~~~---~l~-~~~i~vvD~~~~~~~~~---~~~~---qi----- 136 (199)
T TIGR00101 78 -NLEAVAEMEARFPPLEMVFIESGGDNL-----SATFSP---ELA-DLTIFVIDVAAGDKIPR---KGGP---GI----- 136 (199)
T ss_pred -HHHHHHHHHhcCCCCCEEEEECCCCCc-----ccccch---hhh-CcEEEEEEcchhhhhhh---hhHh---Hh-----
Confidence 12233322 23468999999999422 211111 012 23444456776655321 1001 11
Q ss_pred CCCccEEEEccccccc---cchhhhhHhHH--HhCCCEEEEe--cCCCcccc
Q 007789 531 PQLIDGILLTKFDTID---DKVGAALSMVY--VSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 531 ~~~it~IIlTKlD~~d---~k~G~als~~~--~~g~PI~fig--~Gq~v~DL 575 (589)
..-|.+++||.|..+ +..-.+..... ..+.|+.++. +|++++.+
T Consensus 137 -~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el 187 (199)
T TIGR00101 137 -TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTV 187 (199)
T ss_pred -hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHH
Confidence 134779999999962 12222222222 3456776664 57776544
No 450
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.57 E-value=2.1e-06 Score=84.94 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=86.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCC----CCCHHHHHH
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY----EKDPAIVAK 455 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~----~~d~~~ia~ 455 (589)
.+.+.+|+|+|+.|||||||+..|+..+. ...+|.+...|+......++++.. +.++..... ..... ...
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~~----~~~~~~l~~gcic~~~~~-~~~ 92 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRKY----GAPAIQINTGKECHLDAH-MVA 92 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHHc----CCcEEEEcCCCcccCChH-HHH
Confidence 44578999999999999999999987654 335788877777542233333322 222211111 11111 223
Q ss_pred HHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 007789 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 535 (589)
Q Consensus 456 ~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it 535 (589)
+++..+...++|.++|+|+|.......+ . ......+.|-+++.+.+... .+...+ ...+
T Consensus 93 ~~l~~~~~~~~d~IiIEt~G~l~~~~~~----~-----~~~~~~i~Vvd~~~~d~~~~---~~~~~~---------~~a~ 151 (207)
T TIGR00073 93 HALEDLPLDDIDLLFIENVGNLVCPADF----D-----LGEHMRVVLLSVTEGDDKPL---KYPGMF---------KEAD 151 (207)
T ss_pred HHHHHhccCCCCEEEEecCCCcCCCccc----c-----cccCeEEEEEecCcccchhh---hhHhHH---------hhCC
Confidence 5566555557899999999943222111 1 12333344455555543321 111111 0235
Q ss_pred EEEEccccccccch---hhhhHhHHHh--CCCEEEEec
Q 007789 536 GILLTKFDTIDDKV---GAALSMVYVS--GAPVMFVGC 568 (589)
Q Consensus 536 ~IIlTKlD~~d~k~---G~als~~~~~--g~PI~fig~ 568 (589)
.+++||.|...... -.+....... ..||.++..
T Consensus 152 iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa 189 (207)
T TIGR00073 152 LIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSL 189 (207)
T ss_pred EEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEEC
Confidence 79999999863211 1222222222 367777663
No 451
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.50 E-value=6.8e-07 Score=111.11 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=59.0
Q ss_pred cccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-cccccc
Q 007789 470 LVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDD 547 (589)
Q Consensus 470 liDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~ 547 (589)
...| |||+.||+.||..|.+ ....+.+++| ||||+||++.+..+.. ..|..|.+. +-|.||+.+ +|.+ .
T Consensus 1696 ~~~tLSGGE~qRikLa~~l~~--~~~~~~lyil-DEPt~GLh~~d~~~Ll-~~l~~L~~~----g~tvivieH~~~~i-~ 1766 (1809)
T PRK00635 1696 NLSSLSLSEKIAIKIAKFLYL--PPKHPTLFLL-DEIATSLDNQQKSALL-VQLRTLVSL----GHSVIYIDHDPALL-K 1766 (1809)
T ss_pred cCCccCchHHHHHHHHHHHhc--CCCCCcEEEE-cCCCCCCCHHHHHHHH-HHHHHHHhc----CCeEEEEeCCHHHH-H
Confidence 4555 9999999999999984 1112566666 9999999999875444 777777765 566677766 3332 1
Q ss_pred chhhhhHhHH---HhCCCEEEEecCCCc
Q 007789 548 KVGAALSMVY---VSGAPVMFVGCGQSY 572 (589)
Q Consensus 548 k~G~als~~~---~~g~PI~fig~Gq~v 572 (589)
..-.++-|-- ..|--|+|-|+-+.+
T Consensus 1767 ~aD~iidlgp~gG~~GG~iva~Gtp~~i 1794 (1809)
T PRK00635 1767 QADYLIEMGPGSGKTGGKILFSGPPKDI 1794 (1809)
T ss_pred hCCEEEEcCCCcccCCCEEEEEeCHHHH
Confidence 1111111111 134567777765544
No 452
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.50 E-value=2.1e-07 Score=99.73 Aligned_cols=169 Identities=17% Similarity=0.206 Sum_probs=99.4
Q ss_pred ccccccccccCC---ceEEEEEecCCCcHHHHHHHHHHhHhhCCc-EEEEcccc-------cCccchhhhhH---hhhhc
Q 007789 371 LRDVHAAKEQRK---PYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACD-------TFRSGAVEQLR---THARR 436 (589)
Q Consensus 371 L~~Is~~i~~Ge---p~iI~LVGpNGvGKTTlLakLAgll~~~~G-kV~l~~~D-------t~RigaveQL~---~~~~~ 436 (589)
+.+..+.+..|+ .-++.++|.||.||||++++|||.++|+.| +|-..... .-+-|.|.|+- .+...
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay 431 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAY 431 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhh
Confidence 345555555442 239999999999999999999999999865 44332221 23456666543 11111
Q ss_pred cccceeccCCCCCHHHHHHHHHHHhcccC-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 437 LQVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 437 l~v~l~~~~~~~d~~~ia~~al~~a~l~~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
+.- ..+.+.++-+...+ +|..+-..|||++||++++..|-+ ..++.|. |||.+-||...+.
T Consensus 432 ~~p------------qF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGK-----pAdvYli-DEpsAylDSeQRi 493 (592)
T KOG0063|consen 432 MHP------------QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGK-----PADVYLI-DEPSAYLDSEQRI 493 (592)
T ss_pred cCH------------HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCC-----CCceEEe-cCchhhcChHHHH
Confidence 111 11222333222222 233344459999999999999984 5566665 9999999987654
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCC
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 570 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq 570 (589)
..- ..+..+.-.. ..+..++.+ |. +-..|....-|+|.|.--
T Consensus 494 ~As-kvikRfilha---kktafvVEh-df--------ImaTYladrvivf~G~ps 535 (592)
T KOG0063|consen 494 IAS-KVIKRFILHA---KKTAFVVEH-DF--------IMATYLADRVIVFEGQPS 535 (592)
T ss_pred HHH-HHHHHHHHhc---cchhhhhhh-HH--------HHHHhhcceeEEEecCcc
Confidence 332 3343332211 333444332 43 234577788888887543
No 453
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.47 E-value=8.3e-07 Score=101.49 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=59.9
Q ss_pred ccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccc
Q 007789 471 VDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDK 548 (589)
Q Consensus 471 iDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k 548 (589)
.-| |||+-||+-||.+|.+ +.....+.+| ||||+||-..+..+.+ +.|..|.+.+ -|+|||.+ +|-+ ..
T Consensus 820 atTLSGGEaQRvKLA~EL~k--~~tg~TlYiL-DEPTTGLH~~Di~kLl-~VL~rLvd~G----nTViVIEHNLdVI-k~ 890 (935)
T COG0178 820 ATTLSGGEAQRVKLAKELSK--RSTGKTLYIL-DEPTTGLHFDDIKKLL-EVLHRLVDKG----NTVIVIEHNLDVI-KT 890 (935)
T ss_pred cccccchHHHHHHHHHHHhh--ccCCCeEEEe-CCCCCCCCHHHHHHHH-HHHHHHHhCC----CEEEEEecccceE-ee
Confidence 345 9999999999999996 2234467776 9999999888865444 7777787764 44455443 5543 11
Q ss_pred hhhhhHhHH---HhCCCEEEEecCCCccc
Q 007789 549 VGAALSMVY---VSGAPVMFVGCGQSYTD 574 (589)
Q Consensus 549 ~G~als~~~---~~g~PI~fig~Gq~v~D 574 (589)
.-.++-+== .-|--|++.|+-+.+..
T Consensus 891 AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 891 ADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred cCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 111111100 12556777777666654
No 454
>PRK13768 GTPase; Provisional
Probab=98.42 E-value=2.1e-06 Score=87.89 Aligned_cols=161 Identities=24% Similarity=0.232 Sum_probs=86.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc--cchhh--hhHhh---hh---cccc-ceeccCCCCC-H
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--SGAVE--QLRTH---AR---RLQV-PIFEKGYEKD-P 450 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R--igave--QL~~~---~~---~l~v-~l~~~~~~~d-~ 450 (589)
++++++.|+.||||||++..++.++...+.+|.+...|... .++.. .++.+ .+ ..++ |-....+..+ .
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~ 81 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLL 81 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHH
Confidence 46899999999999999999999988888899998887621 00000 00100 00 1000 0000000000 0
Q ss_pred HHHHHHHHHHhcccCCCccccccCcccccc--HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 451 AIVAKEAIQEATRNGSDVVLVDTAGRMQDN--EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 451 ~~ia~~al~~a~l~~~d~vliDTSGg~qqr--~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
..........+...+.+++++|++|...-- ..+.+.+.+.+....++.+++|-++..+.++.+......-.+......
T Consensus 82 ~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~ 161 (253)
T PRK13768 82 LTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL 161 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc
Confidence 112233444444445689999999976521 223333333222223889999888877776655322211111110111
Q ss_pred CCCCCccEEEEccccccc
Q 007789 529 PNPQLIDGILLTKFDTID 546 (589)
Q Consensus 529 ~~~~~it~IIlTKlD~~d 546 (589)
. ..-.+++||+|...
T Consensus 162 ~---~~~i~v~nK~D~~~ 176 (253)
T PRK13768 162 G---LPQIPVLNKADLLS 176 (253)
T ss_pred C---CCEEEEEEhHhhcC
Confidence 1 23458999999873
No 455
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.41 E-value=2e-06 Score=82.52 Aligned_cols=136 Identities=14% Similarity=0.047 Sum_probs=79.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc-
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR- 463 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l- 463 (589)
++.|.||+|+||||+...++.....++.+|++.+.+.. .+|+...+..+++++ .. +...+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~----~~~~~~~~~~~g~~~---------~~-----l~~~g~l 62 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES----PEELIENAESLGWDL---------ER-----LEDEGLL 62 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC----HHHHHHHHHHcCCCh---------HH-----HHhcCCe
Confidence 46899999999999999998766667788888876542 233333344444332 11 000111
Q ss_pred cCCCccccccCccccc-cHHHHHHHHhhhhhcCCCEEEEEecCCCCCC---HHHHHHHHHHHHHHhhcCCCCCCccEEEE
Q 007789 464 NGSDVVLVDTAGRMQD-NEPLMRALSKLIYLNNPDLVLFVGEALVGND---AVDQLSKFNQKLADLSSSPNPQLIDGILL 539 (589)
Q Consensus 464 ~~~d~vliDTSGg~qq-r~~LaraL~kl~~~~~PdlILLVDEPt~GlD---~~~q~~~f~~~l~~l~~~~~~~~it~IIl 539 (589)
.-.+..+...++++.+ +..++..+...+...+|+++++ |||++.+| ... ...+...+..+.. .+++.+++
T Consensus 63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lvi-D~~~~~~~~~~~~~-~~~i~~l~~~l~~----~g~tvi~v 136 (187)
T cd01124 63 AIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVI-DSVSGLLLMEQSTA-RLEIRRLLFALKR----FGVTTLLT 136 (187)
T ss_pred EEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEE-eCcHHHhhcChHHH-HHHHHHHHHHHHH----CCCEEEEE
Confidence 1112222333666554 2244444544444578998887 99999988 432 2334445555543 27777887
Q ss_pred ccccc
Q 007789 540 TKFDT 544 (589)
Q Consensus 540 TKlD~ 544 (589)
+....
T Consensus 137 ~~~~~ 141 (187)
T cd01124 137 SEQSG 141 (187)
T ss_pred ecccc
Confidence 76443
No 456
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.37 E-value=1.4e-06 Score=90.18 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=36.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
+.++|+||||+||||+++.|++++.+..|+|.+.+.++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 378999999999999999999999999999999988763
No 457
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.37 E-value=1.6e-06 Score=79.90 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=33.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
+++|+|++|+||||++..|++...+.++.|.+..++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 47899999999999999999999888899998887653
No 458
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=98.36 E-value=4.9e-06 Score=83.80 Aligned_cols=134 Identities=23% Similarity=0.339 Sum_probs=92.2
Q ss_pred ecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhcc--------ccceeccCCCCCHHHHHHHHHHHh
Q 007789 390 GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--------QVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 390 GpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l--------~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
.-=|+||||++..||+.+-.++++|.+..+|..|.-+ .|.++- .+.++ ..+....+.++++.+
T Consensus 9 ~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~-----~W~~~a~~~~~~~~~~~V~----~~~e~~~l~~~~e~a 79 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAARGARVALIDADPNQPLA-----KWAENAQRPGAWPDRIEVY----EADELTILEDAYEAA 79 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH-----HHHHhccccCCCCCCeeEE----eccchhhHHHHHHHH
Confidence 4458999999999999999999999999999977322 222221 12222 223345666777777
Q ss_pred cccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC--CHHHHHHHHHHHHHHhhcCCCCCCccEEEE
Q 007789 462 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN--DAVDQLSKFNQKLADLSSSPNPQLIDGILL 539 (589)
Q Consensus 462 ~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl--D~~~q~~~f~~~l~~l~~~~~~~~it~IIl 539 (589)
...+++++++||.|+.......+ +. ..|+||. |+.+. |.....+.|+- +.++....+......+++
T Consensus 80 ~~~~~d~VlvDleG~as~~~~~a--ia------~sDlVlI---P~~~s~lD~~eA~~t~~~-v~~~~~~~~~~ip~~Vl~ 147 (231)
T PF07015_consen 80 EASGFDFVLVDLEGGASELNDYA--IA------RSDLVLI---PMQPSQLDADEAAKTFKW-VRRLEKAERRDIPAAVLF 147 (231)
T ss_pred HhcCCCEEEEeCCCCCchhHHHH--HH------HCCEEEE---CCCCChHHHHHHHHHHHH-HHHHHHhhCCCCCeeEEE
Confidence 76789999999998877654433 33 6789998 87665 88888877744 444433333334557999
Q ss_pred ccccc
Q 007789 540 TKFDT 544 (589)
Q Consensus 540 TKlD~ 544 (589)
|++.-
T Consensus 148 Tr~~~ 152 (231)
T PF07015_consen 148 TRVPA 152 (231)
T ss_pred ecCCc
Confidence 99873
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.34 E-value=4.2e-07 Score=81.31 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=41.7
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
.+|+++++.+..|+ +++|+||+|+|||||++.|+ .|+|.+.+.|+.
T Consensus 3 ~aL~~vsl~i~~ge--~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~ 48 (107)
T cd00820 3 TSLHGVLVDVYGKV--GVLITGDSGIGKTELALELI------KRKHRLVGDDNV 48 (107)
T ss_pred eEEEeeEEEEcCCE--EEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHH
Confidence 47899999999999 99999999999999999986 788999998873
No 460
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.30 E-value=7.2e-07 Score=104.58 Aligned_cols=122 Identities=20% Similarity=0.227 Sum_probs=74.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh-HhhCCc-EEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYW-LLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgl-l~~~~G-kV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
.+++|+|||++||||+|+.++.. +..+.| -|-. ....+++.+++. +... + +.
T Consensus 328 ~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa--~~~~~i~~~~~i-----------~~~i-g-~~----------- 381 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPA--NEPSEIPVFKEI-----------FADI-G-DE----------- 381 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCccc--CCCccccccceE-----------EEec-C-Cc-----------
Confidence 38999999999999999999853 333333 2211 111122222211 1000 0 00
Q ss_pred cccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEc
Q 007789 462 TRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 540 (589)
Q Consensus 462 ~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlT 540 (589)
.... .-+.| |++|++...+++++. .|.++|| |||++|+|+.+........+..+... +..+++.|
T Consensus 382 --~si~-~~lStfS~~m~~~~~Il~~~~------~~sLvLl-DE~~~GtDp~eg~ala~aile~l~~~----~~~vIitT 447 (782)
T PRK00409 382 --QSIE-QSLSTFSGHMTNIVRILEKAD------KNSLVLF-DELGAGTDPDEGAALAISILEYLRKR----GAKIIATT 447 (782)
T ss_pred --cchh-hchhHHHHHHHHHHHHHHhCC------cCcEEEe-cCCCCCCCHHHHHHHHHHHHHHHHHC----CCEEEEEC
Confidence 0011 12344 899999888887663 7888887 99999999998765554455555432 66788888
Q ss_pred ccccc
Q 007789 541 KFDTI 545 (589)
Q Consensus 541 KlD~~ 545 (589)
+..+.
T Consensus 448 H~~el 452 (782)
T PRK00409 448 HYKEL 452 (782)
T ss_pred ChHHH
Confidence 86543
No 461
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.29 E-value=4.3e-07 Score=99.76 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=45.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCc-EEEEcccccCc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDTFR 423 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G-kV~l~~~Dt~R 423 (589)
.+|++|++.+.+|+ +++||||+||||||+|+ +++..|..| +|.+.|.+.+.
T Consensus 20 ~vL~~Vsl~i~~GE--iv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 20 RILVKFNKELPSSS--LLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHhCCceeecCCC--EEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 46789999999999 99999999999999999 677777766 89999999864
No 462
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.29 E-value=3.7e-06 Score=87.80 Aligned_cols=83 Identities=22% Similarity=0.331 Sum_probs=56.6
Q ss_pred CCcCChhhHHHHHHHHHHHHHHhhHH---HHHHHHHHhcCcccccccccccccccccCCceEEEEEecCCCcHHHHHHHH
Q 007789 327 KANLDKADLEPALKALKDRLMTKNVA---AMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 403 (589)
Q Consensus 327 ~~~l~~~~l~~~l~~l~~~Ll~~~V~---al~~~l~~il~p~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakL 403 (589)
+..|+-+++.++.--+. +|+.--|. .+.....+++.. .....|.+|+|+|+|||||||++++|
T Consensus 17 ~~~~~~~~v~~iy~pl~-~~~~~~~~~~~~~~~~~~~f~~~-------------~~~~~p~IIGIaG~~GSGKSTlar~L 82 (290)
T TIGR00554 17 NEDLSLEEVATIYLPLS-RLLNFYISSNLRRQAVLEQFLGT-------------NGAKIPYIISIAGSVAVGKSTTARIL 82 (290)
T ss_pred CCCcCHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHhc-------------ccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 45777777777654443 33333333 222223333211 12346889999999999999999999
Q ss_pred HHhHh--hCCcEEEEcccccCc
Q 007789 404 AYWLL--QHKVSVMMAACDTFR 423 (589)
Q Consensus 404 Agll~--~~~GkV~l~~~Dt~R 423 (589)
++++. +.+|+|.+.+.|-|.
T Consensus 83 ~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 83 QALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred HHHHhhcCCCCceEEEeccccc
Confidence 99997 668899999999865
No 463
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.29 E-value=5.1e-06 Score=82.34 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=40.2
Q ss_pred ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 472 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 472 DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
-.|||++..+.|+--|+ +.+....++++| ||+.++||..++. .+...|..+... .-.||+|.-+
T Consensus 136 ~lSgGEk~~~~Lal~lA-~~~~~~~p~~il-DEvd~~LD~~~~~-~l~~~l~~~~~~-----~Q~ii~Th~~ 199 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLA-LQRYKPSPFLIL-DEVDAALDEQNRK-RLADLLKELSKQ-----SQFIITTHNP 199 (220)
T ss_dssp GS-HHHHHHHHHHHHHH-HHTCS--SEEEE-ESTTTTS-HHHHH-HHHHHHHHHTTT-----SEEEEE-S-H
T ss_pred ccccccccccccccccc-cccccccccccc-ccccccccccccc-cccccccccccc-----cccccccccc
Confidence 34999999998887666 445445556666 9999999999874 444777766532 3346666533
No 464
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.24 E-value=4.8e-06 Score=83.57 Aligned_cols=134 Identities=18% Similarity=0.219 Sum_probs=76.4
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-hCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
+-+++++...+++ +++|+||||+||||+++.|+.... .+-|- ..-++-++++.+.++ +.+
T Consensus 19 v~ndi~l~~~~~~--~~~itG~n~~gKs~~l~~i~~~~~la~~G~--~vpa~~~~i~~~~~i-----------~~~---- 79 (218)
T cd03286 19 VPNDVDLGATSPR--ILVLTGPNMGGKSTLLRTVCLAVIMAQMGM--DVPAKSMRLSLVDRI-----------FTR---- 79 (218)
T ss_pred EEeeeEEeecCCc--EEEEECCCCCchHHHHHHHHHHHHHHHcCC--ccCccccEeccccEE-----------EEe----
Confidence 5678888888888 999999999999999999997432 22221 111222232222211 000
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhh-cCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL-NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~-~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~ 527 (589)
+...|...-+.|--+ .=|+.+..+++. .+|.++|+ |||..|.++.+........+..+.+
T Consensus 80 --------------~~~~d~~~~~~StF~----~e~~~~~~il~~~~~~sLvLl-DE~~~Gt~~~dg~~la~ail~~L~~ 140 (218)
T cd03286 80 --------------IGARDDIMKGESTFM----VELSETANILRHATPDSLVIL-DELGRGTSTHDGYAIAHAVLEYLVK 140 (218)
T ss_pred --------------cCcccccccCcchHH----HHHHHHHHHHHhCCCCeEEEE-ecccCCCCchHHHHHHHHHHHHHHH
Confidence 000111111112111 113334444443 35666666 9999999999877666555666654
Q ss_pred CCCCCCccEEEEccccc
Q 007789 528 SPNPQLIDGILLTKFDT 544 (589)
Q Consensus 528 ~~~~~~it~IIlTKlD~ 544 (589)
. .+..+++.|+.-+
T Consensus 141 ~---~~~~~i~~TH~~e 154 (218)
T cd03286 141 K---VKCLTLFSTHYHS 154 (218)
T ss_pred h---cCCcEEEEeccHH
Confidence 2 2667788888544
No 465
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.21 E-value=2.2e-05 Score=81.84 Aligned_cols=164 Identities=15% Similarity=0.229 Sum_probs=90.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCC----CCCHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY----EKDPAIVAKEAIQ 459 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~----~~d~~~ia~~al~ 459 (589)
.++.|+|++||||||||..|.+.+....+ +.+...|..... +-. ..+..+++...... ..+ +....+++.
T Consensus 105 ~~v~l~G~pGsGKTTLl~~l~~~l~~~~~-~~VI~gD~~t~~--Da~--rI~~~g~pvvqi~tG~~Chl~-a~mv~~Al~ 178 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLMRLKDSVP-CAVIEGDQQTVN--DAA--RIRATGTPAIQVNTGKGCHLD-AQMIADAAP 178 (290)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccCCC-EEEECCCcCcHH--HHH--HHHhcCCcEEEecCCCCCcCc-HHHHHHHHH
Confidence 39999999999999999999998877654 444444543222 111 12233445433221 223 344566777
Q ss_pred HhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEE
Q 007789 460 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 539 (589)
Q Consensus 460 ~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIl 539 (589)
.+...+.++++|++.|..--...+ .|.. ...+++ -..+.|.|-. .++-..+ ..-+.+++
T Consensus 179 ~L~~~~~d~liIEnvGnLvcPa~f--dlge-----~~~v~v--lsV~eg~dkp---lKyp~~f---------~~ADIVVL 237 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPASF--DLGE-----KHKVAV--LSVTEGEDKP---LKYPHMF---------AAASLMLL 237 (290)
T ss_pred HHhhcCCcEEEEECCCCccCCCcc--chhh-----ceeEEE--EECccccccc---hhccchh---------hcCcEEEE
Confidence 777778899999999852211111 1221 223333 3345565511 1221111 25678999
Q ss_pred cccccccc---chhhhhHhHHHh--CCCEEEEe--cCCCccc
Q 007789 540 TKFDTIDD---KVGAALSMVYVS--GAPVMFVG--CGQSYTD 574 (589)
Q Consensus 540 TKlD~~d~---k~G~als~~~~~--g~PI~fig--~Gq~v~D 574 (589)
||+|.... .+-.++.-.... ..||..+. +|+.++.
T Consensus 238 NKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~ 279 (290)
T PRK10463 238 NKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQ 279 (290)
T ss_pred EhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHH
Confidence 99999731 222333333232 45666665 4555443
No 466
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.20 E-value=6.2e-06 Score=79.94 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=76.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 464 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~ 464 (589)
.|+++|+.|+|||||+..|.+........-....... ......+.+...-.+.+...... ....
T Consensus 5 ~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~ti~~~~~~~~---------------~~~~ 68 (188)
T PF00009_consen 5 NIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNA-FLDKHPEERERGITIDLSFISFE---------------KNEN 68 (188)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHC-HHHSSHHHHHCTSSSSSEEEEEE---------------BTES
T ss_pred EEEEECCCCCCcEeechhhhhhccccccccccccccc-cccccchhhhccccccccccccc---------------cccc
Confidence 7999999999999999999976543211000000000 00011111111111111111100 1234
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
+....++||+|...-.....+++. .+|.+++|-++..|...... +.+..+..... . -.+++||+|.
T Consensus 69 ~~~i~~iDtPG~~~f~~~~~~~~~------~~D~ailvVda~~g~~~~~~-----~~l~~~~~~~~--p-~ivvlNK~D~ 134 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIKEMIRGLR------QADIAILVVDANDGIQPQTE-----EHLKILRELGI--P-IIVVLNKMDL 134 (188)
T ss_dssp SEEEEEEEESSSHHHHHHHHHHHT------TSSEEEEEEETTTBSTHHHH-----HHHHHHHHTT---S-EEEEEETCTS
T ss_pred ccceeecccccccceeecccceec------ccccceeeeecccccccccc-----ccccccccccc--c-eEEeeeeccc
Confidence 567889999997554444444443 88999999999999887543 33333333221 2 6799999999
Q ss_pred cccchhhhhH
Q 007789 545 IDDKVGAALS 554 (589)
Q Consensus 545 ~d~k~G~als 554 (589)
...+.-..+.
T Consensus 135 ~~~~~~~~~~ 144 (188)
T PF00009_consen 135 IEKELEEIIE 144 (188)
T ss_dssp SHHHHHHHHH
T ss_pred hhhhHHHHHH
Confidence 8444433333
No 467
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=5.4e-06 Score=85.49 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=36.6
Q ss_pred ccc-CccccccHHHHHHHHh--hhh--hcCCCEEEEEecCCCCCCHHHHHHHHHHHH
Q 007789 471 VDT-AGRMQDNEPLMRALSK--LIY--LNNPDLVLFVGEALVGNDAVDQLSKFNQKL 522 (589)
Q Consensus 471 iDT-SGg~qqr~~LaraL~k--l~~--~~~PdlILLVDEPt~GlD~~~q~~~f~~~l 522 (589)
++. |+|+++++.++++|+. +++ ..+|+++|| |||+++||+..+...+ +.+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illl-DEp~a~LD~~~~~~l~-~~l 235 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLL-DDVLAELDLGRQAALL-DAI 235 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE-cCcchhcCHHHHHHHH-HHh
Confidence 444 9999999999998863 211 247887777 9999999998774333 444
No 468
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.19 E-value=1.1e-05 Score=71.14 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=30.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
.++|+||+|+||||++..|+..+......+.+..++..
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 89999999999999999999988776544555555543
No 469
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.19 E-value=1.6e-05 Score=75.69 Aligned_cols=145 Identities=21% Similarity=0.218 Sum_probs=74.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCC-------CCCHHHHHHHH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY-------EKDPAIVAKEA 457 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~-------~~d~~~ia~~a 457 (589)
++.|+|++|+||||+++.+..... +.++.+...+....+.-.++-. .-+.+++.... ..+......++
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~--~~~~~~i~~~~G~~~~d~~~~~---~~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH--GRKIAVIENEFGEVGIDNQLVV---DTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc--CCcEEEEecCCCccchhHHHHh---CCCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 788999999999999999987642 4456655544333222222111 11222222111 11222222222
Q ss_pred HHHh--cccCCCccccccCccccccHHHHHHHH---hhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007789 458 IQEA--TRNGSDVVLVDTAGRMQDNEPLMRALS---KLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 532 (589)
Q Consensus 458 l~~a--~l~~~d~vliDTSGg~qqr~~LaraL~---kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~ 532 (589)
++.+ ....++.++++|+|-.. ...++..+. .+......+.+++|-+|....+..... +....++.
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~-p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~---~~~~~Qi~------ 146 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLAD-PGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ---TEAQSQIA------ 146 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCC-HHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc---HHHHHHHH------
Confidence 3322 23467899999987654 345555432 111223445555555566555433221 12222222
Q ss_pred CccEEEEccccc
Q 007789 533 LIDGILLTKFDT 544 (589)
Q Consensus 533 ~it~IIlTKlD~ 544 (589)
.-+.||+||.|.
T Consensus 147 ~ad~ivlnk~dl 158 (158)
T cd03112 147 FADRILLNKTDL 158 (158)
T ss_pred HCCEEEEecccC
Confidence 457899999984
No 470
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.19 E-value=1.6e-05 Score=80.33 Aligned_cols=136 Identities=14% Similarity=0.030 Sum_probs=69.8
Q ss_pred cccCCceEEEEEecCCCcHHHHH-HHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHH
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNL-AKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 456 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlL-akLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~ 456 (589)
+++|. +++|+|+||+||||++ +.+++.+++ +.++.+...+-.....+.| ...++..+ ..
T Consensus 21 i~~g~--~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~~~~~~~----~~~~g~~~---------~~---- 80 (230)
T PRK08533 21 IPAGS--LILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTTTEFIKQ----MMSLGYDI---------NK---- 80 (230)
T ss_pred CCCCc--EEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHH----HHHhCCch---------HH----
Confidence 56788 9999999999999995 555666554 4455554444333222222 23333321 00
Q ss_pred HHHHhcccCCCccc--cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC----CHHHHHHHHHHHHHHhhcCCC
Q 007789 457 AIQEATRNGSDVVL--VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN----DAVDQLSKFNQKLADLSSSPN 530 (589)
Q Consensus 457 al~~a~l~~~d~vl--iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl----D~~~q~~~f~~~l~~l~~~~~ 530 (589)
.+.. ..+..+. ...++...++..+. .+...+...+|+++++ |||++++ |+... +.+.+.+..+...
T Consensus 81 ~~~~---~~l~~~~~~~~~~~~~~~~~~l~-~il~~~~~~~~~~lVI-De~t~~l~~~~d~~~~-~~l~~~l~~l~~~-- 152 (230)
T PRK08533 81 KLIS---GKLLYIPVYPLLSGNSEKRKFLK-KLMNTRRFYEKDVIII-DSLSSLISNDASEVAV-NDLMAFFKRISSL-- 152 (230)
T ss_pred Hhhc---CcEEEEEecccccChHHHHHHHH-HHHHHHHhcCCCEEEE-ECccHHhcCCcchHHH-HHHHHHHHHHHhC--
Confidence 0000 0110000 01133333333333 3333334457898887 9999998 65543 3344566655443
Q ss_pred CCCccEEEEcccc
Q 007789 531 PQLIDGILLTKFD 543 (589)
Q Consensus 531 ~~~it~IIlTKlD 543 (589)
+.+.++.+...
T Consensus 153 --g~tvi~t~~~~ 163 (230)
T PRK08533 153 --NKVIILTANPK 163 (230)
T ss_pred --CCEEEEEeccc
Confidence 45555554433
No 471
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.10 E-value=6.1e-06 Score=80.67 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=61.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCcc--chhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--GAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Ri--gaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+|+|+|++||||||++++|++++ .++.+.+.+.|-|.. ...+..... ... +...... ......+.+..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~-~~~~~~~-~~~~~~~~l~~l~ 72 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERK----NNN-YDHPDAF-DFDLLISHLQDLK 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhc----cCC-CCCCCcc-cHHHHHHHHHHHH
Confidence 58999999999999999999988 467788888887642 111211110 100 0000111 1223334454444
Q ss_pred ccC-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 463 RNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 463 l~~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
..+ ......|.+.+++....+ .. ..++++++ +.|+.+.++
T Consensus 73 ~~~~~~~p~~d~~~~~~~~~~~---~i-----~~~~~vI~-eg~~~~~~~ 113 (198)
T cd02023 73 NGKSVEIPVYDFKTHSRLKETV---TV-----YPADVIIL-EGILALYDK 113 (198)
T ss_pred CCCCEeccccccccCcccCCce---ec-----CCCCEEEE-echhhccch
Confidence 332 233344666666544333 12 25666665 888887764
No 472
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.09 E-value=1.6e-05 Score=80.81 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=27.9
Q ss_pred EEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 388 FVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 388 LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
++||.||||||+++.+..|+...+.++.+.+.|+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 6899999999999999999999889999999997
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.07 E-value=4.2e-06 Score=81.44 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=36.4
Q ss_pred cccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccc
Q 007789 376 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 419 (589)
Q Consensus 376 ~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~ 419 (589)
+.+..|+ .++|+|||||||||+++.|+++++++.|.|.+.+.
T Consensus 20 ~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 20 LAVEARK--NILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHhCCC--EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 4456788 99999999999999999999999998888887543
No 474
>PHA02518 ParA-like protein; Provisional
Probab=98.07 E-value=0.00012 Score=71.57 Aligned_cols=162 Identities=17% Similarity=0.192 Sum_probs=89.7
Q ss_pred EEEEEecCC-CcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhcc-ccceeccCCCCCHHHHHHHHHHHhc
Q 007789 385 VVVFVGVNG-VGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-QVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 385 iI~LVGpNG-vGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l-~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+|+|++.-| |||||+...||.++...+.+|++..+|..+..... ........ .++... .. ....+.+..+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~-~~~~~~~~~~i~~~~--~~----~~~~~~l~~~- 73 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDW-AEAREEGEPLIPVVR--MG----KSIRADLPKV- 73 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHH-HHhcccCCCCCchhh--cc----HHHHHHHHHH-
Confidence 678887765 99999999999999988899999999986522111 00000000 112111 01 1122333333
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...||+++|||+|+.. .+++.... ..|.+|++-+|.. .|... ...+.+.+..+.........-++++++.
T Consensus 74 ~~~~d~viiD~p~~~~---~~~~~~l~-----~aD~viip~~ps~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~iv~n~~ 143 (211)
T PHA02518 74 ASGYDYVVVDGAPQDS---ELARAALR-----IADMVLIPVQPSP-FDIWA-APDLVELIKARQEVTDGLPKFAFIISRA 143 (211)
T ss_pred hccCCEEEEeCCCCcc---HHHHHHHH-----HCCEEEEEeCCCh-hhHHH-HHHHHHHHHHHHhhCCCCceEEEEEecc
Confidence 3568999999988753 33333332 7888888777753 22222 2222344444332222334557888887
Q ss_pred cccccchhhhhHhHHHhCCCEE
Q 007789 543 DTIDDKVGAALSMVYVSGAPVM 564 (589)
Q Consensus 543 D~~d~k~G~als~~~~~g~PI~ 564 (589)
+........+.......+.|+.
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~~~ 165 (211)
T PHA02518 144 IKNTQLYREARKALAGYGLPIL 165 (211)
T ss_pred CCcchHHHHHHHHHHHcCchhh
Confidence 6431222244445444455543
No 475
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=1.4e-05 Score=87.53 Aligned_cols=147 Identities=13% Similarity=0.061 Sum_probs=87.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCC
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 447 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~ 447 (589)
+.+++. .+.+..|+ .++|+|++|+||||+++.|++...++.+.|.+.+.....+.
T Consensus 144 iraID~-ll~I~~Gq--ri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~---------------------- 198 (432)
T PRK06793 144 IKSIDS-MLTIGIGQ--KIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVK---------------------- 198 (432)
T ss_pred CEEEec-cceecCCc--EEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHH----------------------
Confidence 446665 48888999 99999999999999999999999888777766655431110
Q ss_pred CCHHHHHHHHHHHhcccCCCccc---cccCccccccHHHHHH-HHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHH
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVL---VDTAGRMQDNEPLMRA-LSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 523 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vl---iDTSGg~qqr~~Lara-L~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~ 523 (589)
+.....+...++. .-+++ -|.|.+++.+.+.+.. +++..+...-+++|++|++|...|+.. .+ .
T Consensus 199 ----e~~~~~l~~~gl~-~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~r---ei----s 266 (432)
T PRK06793 199 ----DFIRKELGEEGMR-KSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARR---SV----D 266 (432)
T ss_pred ----HHHHHHhhhcccc-eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHH---HH----H
Confidence 0000011110111 11222 3447888888877543 444444445566666699999988752 22 2
Q ss_pred HhhcCCCCCCccEEEEccccccccchhh
Q 007789 524 DLSSSPNPQLIDGILLTKFDTIDDKVGA 551 (589)
Q Consensus 524 ~l~~~~~~~~it~IIlTKlD~~d~k~G~ 551 (589)
.+....-..+.+..+.+++-.+..+.|.
T Consensus 267 l~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 267 IAVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred HHhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 2222221125566666665554445554
No 476
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.04 E-value=3.9e-05 Score=74.97 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=30.3
Q ss_pred CCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 495 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 495 ~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..-+.+| |||-++|.+.-|.... ..|.++.+.+ --.||.|+
T Consensus 146 ~~GiYiL-DEPEa~LSp~RQlell-a~l~~la~sG----aQ~IiATH 186 (233)
T COG3910 146 GQGIYIL-DEPEAALSPSRQLELL-AILRDLADSG----AQIIIATH 186 (233)
T ss_pred cCceEEe-cCccccCCHHHHHHHH-HHHHHHHhcC----CeEEEEec
Confidence 5556666 9999999999887665 7777777664 44577776
No 477
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.04 E-value=8.9e-05 Score=70.23 Aligned_cols=127 Identities=19% Similarity=0.138 Sum_probs=67.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcccC
Q 007789 386 VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG 465 (589)
Q Consensus 386 I~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~ 465 (589)
|+|+|..||||||+++.|++...+.............+.. .++.+ ++.... ....+...+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~-------------~~~~~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLK-EERER------GITIKS-------------GVATFEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCH-HHHHc------CCCeec-------------ceEEEeeCC
Confidence 7899999999999999999865544332222221111100 01000 111000 000011124
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
....++||+|-..-+......+. ..+.+++|-++..+...... +.+..+... .....+++||+|..
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~~~------~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~~---~~~i~iv~nK~D~~ 127 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRGLS------VSDGAILVVDANEGVQPQTR-----EHLRIAREG---GLPIIVAINKIDRV 127 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHHH------hcCEEEEEEECCCCCcHHHH-----HHHHHHHHC---CCCeEEEEECCCCc
Confidence 56789999985433222333333 77888888777777654432 122222221 23456999999987
Q ss_pred c
Q 007789 546 D 546 (589)
Q Consensus 546 d 546 (589)
.
T Consensus 128 ~ 128 (189)
T cd00881 128 G 128 (189)
T ss_pred c
Confidence 3
No 478
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.01 E-value=2.8e-05 Score=76.57 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
.|+|+|++|+|||||+..|++..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 479
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.96 E-value=7.9e-06 Score=82.12 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=38.1
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEE-cccccCc
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM-AACDTFR 423 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l-~~~Dt~R 423 (589)
.++|.+++|+|+||||||||++.|++.+.+.+|.+.+ ..+|-|.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 4567899999999999999999999999999998766 6666654
No 480
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.93 E-value=2.4e-05 Score=78.80 Aligned_cols=142 Identities=19% Similarity=0.115 Sum_probs=70.1
Q ss_pred EEEEecCCCcHHHHHHHHH-HhHhhCCcEEEEcccccCccchhhhhHhh-----hhccccceec--cCCCCCHHHHHHHH
Q 007789 386 VVFVGVNGVGKSTNLAKVA-YWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE--KGYEKDPAIVAKEA 457 (589)
Q Consensus 386 I~LVGpNGvGKTTlLakLA-gll~~~~GkV~l~~~Dt~RigaveQL~~~-----~~~l~v~l~~--~~~~~d~~~ia~~a 457 (589)
++++|.+|+|||||+..+. +.+.+..|.... ..+.++ .|+.+-. ...+++.... ..|...... ...
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~-~~~~~~---~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~--~~~ 75 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARL-NLFRHK---HEVESGRTSSVSNEILGFDSDGEVVNYPDNHLS--ESD 75 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEe-ehhhhh---hhhhcCchhhhhhhhcccCCCCceecCCCCccc--ccc
Confidence 6889999999999999998 444443343322 122211 0111000 0011111000 001100000 001
Q ss_pred HHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEE
Q 007789 458 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 537 (589)
Q Consensus 458 l~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~I 537 (589)
.+.+...+..+.++||+|-....-...+++. ...+|.+++|-++..|....+. +.+..+..... . -.+
T Consensus 76 ~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~----~~~~D~~llVvda~~g~~~~d~-----~~l~~l~~~~i--p-~iv 143 (224)
T cd04165 76 IEICEKSSKLVTFIDLAGHERYLKTTLFGLT----GYAPDYAMLVVAANAGIIGMTK-----EHLGLALALNI--P-VFV 143 (224)
T ss_pred ceeeeeCCcEEEEEECCCcHHHHHHHHHhhc----ccCCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCC--C-EEE
Confidence 1223345667889999986443223333332 1368888888777777654432 22332333222 2 368
Q ss_pred EEcccccc
Q 007789 538 LLTKFDTI 545 (589)
Q Consensus 538 IlTKlD~~ 545 (589)
++||+|..
T Consensus 144 vvNK~D~~ 151 (224)
T cd04165 144 VVTKIDLA 151 (224)
T ss_pred EEECcccc
Confidence 99999986
No 481
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.92 E-value=0.00013 Score=68.31 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=17.4
Q ss_pred EEecCCCcHHHHHHHHHHh
Q 007789 388 FVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 388 LVGpNGvGKTTlLakLAgl 406 (589)
|+|++||||||++++|++.
T Consensus 1 iiG~~~~GKStll~~l~~~ 19 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA 19 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC
Confidence 6899999999999999874
No 482
>PRK13695 putative NTPase; Provisional
Probab=97.92 E-value=2e-05 Score=75.59 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCC
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHK 411 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~ 411 (589)
.|+|+|+||+||||+++.|++.+.+.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G 28 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEG 28 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 589999999999999999999887643
No 483
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.91 E-value=5.5e-05 Score=73.16 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=79.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC---CHHHHHHHHHHH-
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK---DPAIVAKEAIQE- 460 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~---d~~~ia~~al~~- 460 (589)
++.|.|.=||||||+|+.+.. ....+.++.+.-+|.-..+.=. .+.+..++++.....+- ....-...++..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~---~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l 77 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDA---ELLQEDGVPVVELNNGCICCTLRDDLVEALRRL 77 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHH---HHHHTTT-EEEEECTTTESS-TTS-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccch---hhhcccceEEEEecCCCcccccHHHHHHHHHHH
Confidence 789999999999999999998 6667889999888764443222 22222233332211110 000111223333
Q ss_pred hccc--CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 007789 461 ATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 538 (589)
Q Consensus 461 a~l~--~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~II 538 (589)
.... ..|.++|.++| +-.-..++..-..+......+.++.|-+|..-.+.......+.. .+. .-|.++
T Consensus 78 ~~~~~~~~d~IiIE~sG-~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~---Qi~------~ADvIv 147 (178)
T PF02492_consen 78 LREYEERPDRIIIETSG-LADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLRE---QIA------FADVIV 147 (178)
T ss_dssp CCCCHGC-SEEEEEEEC-SSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHH---HHC------T-SEEE
T ss_pred HHhcCCCcCEEEECCcc-ccccchhhhccccccccccccceeEEeccccccccccchhhhhh---cch------hcCEEE
Confidence 3334 58999999998 54444443222233344566656655556443222222222222 222 457899
Q ss_pred Eccccccccc
Q 007789 539 LTKFDTIDDK 548 (589)
Q Consensus 539 lTKlD~~d~k 548 (589)
+||.|.++..
T Consensus 148 lnK~D~~~~~ 157 (178)
T PF02492_consen 148 LNKIDLVSDE 157 (178)
T ss_dssp EE-GGGHHHH
T ss_pred EeccccCChh
Confidence 9999998543
No 484
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.87 E-value=2.4e-05 Score=73.74 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgl 406 (589)
...++|+|++||||||+++.|++.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 457999999999999999999875
No 485
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.87 E-value=0.00024 Score=69.00 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=60.6
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
+....++||+|-..-. .++.... .+.+.+++|-+++.+..... . ..+..+.... ..-.++++|+|.
T Consensus 64 ~~~~~l~DtpG~~~~~-~~~~~~~-----~~~d~~ilV~d~~~~~~~~~--~---~~~~~~~~~~---~p~iiv~NK~Dl 129 (194)
T cd01891 64 DTKINIVDTPGHADFG-GEVERVL-----SMVDGVLLLVDASEGPMPQT--R---FVLKKALELG---LKPIVVINKIDR 129 (194)
T ss_pred CEEEEEEECCCcHHHH-HHHHHHH-----HhcCEEEEEEECCCCccHHH--H---HHHHHHHHcC---CCEEEEEECCCC
Confidence 4456789999865432 2333333 27888888877777643321 1 1222222221 234689999998
Q ss_pred cccchhhhhHh-HH----------HhCCCEEEEe--cCCCcccccC--CCHHHHHHHhh
Q 007789 545 IDDKVGAALSM-VY----------VSGAPVMFVG--CGQSYTDLKK--LNVKSIVKTLL 588 (589)
Q Consensus 545 ~d~k~G~als~-~~----------~~g~PI~fig--~Gq~v~DL~~--~~~~~~v~~Ll 588 (589)
.....-..+.. .. ..+.|+.++. +|+++..++. ...+++++.|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~ 188 (194)
T cd01891 130 PDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTII 188 (194)
T ss_pred CCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHH
Confidence 63333222211 11 1266787776 6888876655 34456666553
No 486
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=97.87 E-value=0.00032 Score=74.74 Aligned_cols=168 Identities=21% Similarity=0.306 Sum_probs=92.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccc--hh---hhhHhh----------hhcc---------
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG--AV---EQLRTH----------ARRL--------- 437 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Rig--av---eQL~~~----------~~~l--------- 437 (589)
+.++|+|+|..|+||||+...||..+...+.+|++..+|+.+.. .+ ...++. .+.+
T Consensus 30 ~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~~~ 109 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFKR 109 (329)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEEEe
Confidence 34599999999999999999999999888889999999985411 00 100110 0011
Q ss_pred -ccceec-------cCCCCCHHHHHHHHHHHhcc--cCCCccccccCccccc---cHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 438 -QVPIFE-------KGYEKDPAIVAKEAIQEATR--NGSDVVLVDTAGRMQD---NEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 438 -~v~l~~-------~~~~~d~~~ia~~al~~a~l--~~~d~vliDTSGg~qq---r~~LaraL~kl~~~~~PdlILLVDE 504 (589)
++.+.. ++..........+.++.+.. ..+|++++|+.|+..- ...+++.+ .+.+++|-.
T Consensus 110 ~gv~~~~~g~p~~~~G~~~~~~i~~~~~l~~l~~~~w~~DyVliD~~gdv~~ggf~l~i~~~~--------ad~VIVVt~ 181 (329)
T cd02033 110 DGVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDWDFDYVLLDFLGDVVCGGFGLPIARDM--------AQKVIVVGS 181 (329)
T ss_pred CCEEEecCCCCeecccccchHHHHHHHHHHHccCccccCCEEEEecCCcceeccccchhhhcC--------CceEEEeCC
Confidence 111111 11111111222345554422 2679999999776651 22333322 335666555
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCE
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPV 563 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI 563 (589)
|... .+.-+....+.+..+........+.++|+++.|.. +.+-.+....+.|+
T Consensus 182 pe~~--si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~----~~ie~~ae~lgi~v 234 (329)
T cd02033 182 NDLQ--SLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGT----GEAQAFAAHAGIPI 234 (329)
T ss_pred chHH--HHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCc----chHHHHHHHhCCCE
Confidence 4221 11111122244444443333446789999998863 23555666678885
No 487
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.86 E-value=0.00012 Score=65.99 Aligned_cols=69 Identities=29% Similarity=0.314 Sum_probs=41.3
Q ss_pred CCCccccccCccccc---cH---HHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 007789 465 GSDVVLVDTAGRMQD---NE---PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 538 (589)
Q Consensus 465 ~~d~vliDTSGg~qq---r~---~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~II 538 (589)
.....++||+|-... +. .+++.+. ..++.+++|-.+.......... .+..... ......++
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~-----~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~---~~~~~ivv 110 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVL-----ERADLILFVVDADLRADEEEEK-----LLELLRE---RGKPVLLV 110 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHH-----HhCCEEEEEEeCCCCCCHHHHH-----HHHHHHh---cCCeEEEE
Confidence 457788999874332 21 3444455 3889988887777776655432 1111111 12345799
Q ss_pred Eccccccc
Q 007789 539 LTKFDTID 546 (589)
Q Consensus 539 lTKlD~~d 546 (589)
+||+|...
T Consensus 111 ~nK~D~~~ 118 (163)
T cd00880 111 LNKIDLLP 118 (163)
T ss_pred EEccccCC
Confidence 99999873
No 488
>PRK09866 hypothetical protein; Provisional
Probab=97.85 E-value=0.00049 Score=78.28 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=42.7
Q ss_pred CCccccccCccccc-cHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 466 SDVVLVDTAGRMQD-NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 466 ~d~vliDTSGg~qq-r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
...+++||+|=... ...+-+.|.+ .....|+||||-+++.+....+. ..+..+....+ ...-.+|++|+|.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~e--qL~eADvVLFVVDat~~~s~~De-----eIlk~Lkk~~K-~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQ--QLARASAVLAVLDYTQLKSISDE-----EVREAILAVGQ-SVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHH--HHhhCCEEEEEEeCCCCCChhHH-----HHHHHHHhcCC-CCCEEEEEEcccC
Confidence 46788999987652 2212222222 12378999999999887766553 22333333221 1145689999998
Q ss_pred c
Q 007789 545 I 545 (589)
Q Consensus 545 ~ 545 (589)
.
T Consensus 302 ~ 302 (741)
T PRK09866 302 Q 302 (741)
T ss_pred C
Confidence 6
No 489
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.84 E-value=0.00029 Score=64.47 Aligned_cols=22 Identities=41% Similarity=0.368 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
..|+|+|++||||||+++.|++
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3799999999999999999986
No 490
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.84 E-value=3.3e-05 Score=73.76 Aligned_cols=142 Identities=24% Similarity=0.328 Sum_probs=80.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 464 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~ 464 (589)
.|+|+|.+.|||||+++.|+|... .+.. |. |- +.....+ . +...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~------~v~n---~p-G~-----Tv~~~~g--~-------------------~~~~ 45 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ------KVGN---WP-GT-----TVEKKEG--I-------------------FKLG 45 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE------EEEE---ST-TS-----SSEEEEE--E-------------------EEET
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------eecC---CC-CC-----CeeeeeE--E-------------------EEec
Confidence 489999999999999999998542 1211 10 00 0000000 0 0112
Q ss_pred CCCccccccCc--ccc---ccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEE
Q 007789 465 GSDVVLVDTAG--RMQ---DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 539 (589)
Q Consensus 465 ~~d~vliDTSG--g~q---qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIl 539 (589)
+..+.++|++| ... ....+++... ...+||++++|-+++. ++ +.. ..+.++.+.+ ....+++
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l---~~~~~D~ii~VvDa~~-l~-----r~l-~l~~ql~e~g---~P~vvvl 112 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYL---LSEKPDLIIVVVDATN-LE-----RNL-YLTLQLLELG---IPVVVVL 112 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHH---HHTSSSEEEEEEEGGG-HH-----HHH-HHHHHHHHTT---SSEEEEE
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHH---hhcCCCEEEEECCCCC-HH-----HHH-HHHHHHHHcC---CCEEEEE
Confidence 34556677766 211 2333433322 2358999999988875 21 122 3344455544 4467999
Q ss_pred ccccccccchhhhh---HhHHHhCCCEEEEe--cCCCccccc
Q 007789 540 TKFDTIDDKVGAAL---SMVYVSGAPVMFVG--CGQSYTDLK 576 (589)
Q Consensus 540 TKlD~~d~k~G~al---s~~~~~g~PI~fig--~Gq~v~DL~ 576 (589)
||+|++ .+-|.-+ .+....|.||..+. +|+.+++|.
T Consensus 113 N~~D~a-~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 113 NKMDEA-ERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp ETHHHH-HHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred eCHHHH-HHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 999998 6666543 56667899998886 566666553
No 491
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.83 E-value=8.2e-05 Score=82.01 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=45.3
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
+.+++++ +.+.+|+ +++|+|+||+||||+++.|+++..++.|.|.+.|.+.
T Consensus 146 ~~vid~l-~~i~~Gq--~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg 196 (438)
T PRK07721 146 VRAIDSL-LTVGKGQ--RVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG 196 (438)
T ss_pred hhhhhee-eeecCCc--EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence 4567788 8899999 9999999999999999999999999999888877654
No 492
>PRK15494 era GTPase Era; Provisional
Probab=97.82 E-value=0.00024 Score=75.90 Aligned_cols=132 Identities=24% Similarity=0.287 Sum_probs=70.8
Q ss_pred cccccccccccCC-----ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccc--ccCccchhhhhHhhhhcccccee
Q 007789 370 ILRDVHAAKEQRK-----PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--DTFRSGAVEQLRTHARRLQVPIF 442 (589)
Q Consensus 370 iL~~Is~~i~~Ge-----p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~--Dt~RigaveQL~~~~~~l~v~l~ 442 (589)
.+..+++.+..|+ ...++|+|.+|||||||++.|.+- ++.+... .+.| ....++ +
T Consensus 34 ~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~------k~~ivs~k~~tTr----------~~~~~~--~ 95 (339)
T PRK15494 34 STSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE------KLSIVTPKVQTTR----------SIITGI--I 95 (339)
T ss_pred cccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC------ceeeccCCCCCcc----------CcEEEE--E
Confidence 4555666555444 347899999999999999999752 2322111 0111 000010 0
Q ss_pred ccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHh--hhhhcCCCEEEEEecCCCCCCHHHHHHHHHH
Q 007789 443 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK--LIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 520 (589)
Q Consensus 443 ~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~k--l~~~~~PdlILLVDEPt~GlD~~~q~~~f~~ 520 (589)
...+....++||+|-......+...+.+ +......|.++||-++..+.+.... .
T Consensus 96 -------------------~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~-----~ 151 (339)
T PRK15494 96 -------------------TLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITH-----N 151 (339)
T ss_pred -------------------EeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHH-----H
Confidence 0123346789999864332222222221 0112378888888777666665432 2
Q ss_pred HHHHhhcCCCCCCccEEEEccccccc
Q 007789 521 KLADLSSSPNPQLIDGILLTKFDTID 546 (589)
Q Consensus 521 ~l~~l~~~~~~~~it~IIlTKlD~~d 546 (589)
.+..+.... ....+++||+|..+
T Consensus 152 il~~l~~~~---~p~IlViNKiDl~~ 174 (339)
T PRK15494 152 ILDKLRSLN---IVPIFLLNKIDIES 174 (339)
T ss_pred HHHHHHhcC---CCEEEEEEhhcCcc
Confidence 222232222 23358999999863
No 493
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.82 E-value=0.00016 Score=73.96 Aligned_cols=164 Identities=13% Similarity=0.148 Sum_probs=86.8
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-CcEEEEcccccCccchhhhhH-hh-hhccccceecc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLR-TH-ARRLQVPIFEK 444 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-~GkV~l~~~Dt~RigaveQL~-~~-~~~l~v~l~~~ 444 (589)
+..|+++.--+..|+ ++.|.|++|+||||++..++..+... +.+|++...+.-. +++. .+ ....++++...
T Consensus 17 ~~~Ld~~~gG~~~g~--~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~----~~~~~r~~~~~~~~~~~~~ 90 (271)
T cd01122 17 FPVLNKLTKGLRKGE--LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPV----VRTARRLLGQYAGKRLHLP 90 (271)
T ss_pred cceeeeeeEEEcCCc--EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCH----HHHHHHHHHHHhCCCcccC
Confidence 455666655677888 99999999999999999998766555 7789888765421 1111 11 11112322110
Q ss_pred --CCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC-------HHHHH
Q 007789 445 --GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND-------AVDQL 515 (589)
Q Consensus 445 --~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD-------~~~q~ 515 (589)
....+. .....+++.+...+ ...++|..+.. .-..++..+..++...+|++|++ |..+.-.+ .....
T Consensus 91 ~~~~~~~~-~~~~~~~~~~~~~~-~l~i~d~~~~~-~~~~i~~~i~~~~~~~~~~~vvI-D~l~~l~~~~~~~~~~~~~~ 166 (271)
T cd01122 91 DTVFIYTL-EEFDAAFDEFEGTG-RLFMYDSFGEY-SMDSVLEKVRYMAVSHGIQHIII-DNLSIMVSDERASGDERKAL 166 (271)
T ss_pred CccccccH-HHHHHHHHHhcCCC-cEEEEcCCCcc-CHHHHHHHHHHHHhcCCceEEEE-CCHHHHhccCCCchhHHHHH
Confidence 011111 22233333322111 23445554431 22344444544445567887776 87544222 11112
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
..+...|..++. ..++++++++.+..
T Consensus 167 ~~~~~~L~~la~---~~~vtvll~sq~~~ 192 (271)
T cd01122 167 DEIMTKLRGFAT---EHGIHITLVSHLRR 192 (271)
T ss_pred HHHHHHHHHHHH---HhCCEEEEEecccC
Confidence 223234444444 34888888887654
No 494
>COG1159 Era GTPase [General function prediction only]
Probab=97.82 E-value=0.00024 Score=73.82 Aligned_cols=121 Identities=26% Similarity=0.311 Sum_probs=82.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccc--ccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--DTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~--Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
..++|||.+-||||||++.|.|. +|.|... .|.| ....++-.
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~------KisIvS~k~QTTR----------~~I~GI~t-------------------- 50 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ------KISIVSPKPQTTR----------NRIRGIVT-------------------- 50 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC------ceEeecCCcchhh----------hheeEEEE--------------------
Confidence 48999999999999999999772 4666542 2223 11112211
Q ss_pred cccCCCccccccCccccccHHHHHHHHhhhh--hcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEE
Q 007789 462 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIY--LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 539 (589)
Q Consensus 462 ~l~~~d~vliDTSGg~qqr~~LaraL~kl~~--~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIl 539 (589)
..+...+++||+|=...+-.|.+.|.+... ....|++|||-+++-+..+.+. ..+..+... .....+++
T Consensus 51 -~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~-----~il~~lk~~---~~pvil~i 121 (298)
T COG1159 51 -TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDE-----FILEQLKKT---KTPVILVV 121 (298)
T ss_pred -cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHH-----HHHHHHhhc---CCCeEEEE
Confidence 124678899999999988888888877443 3589999999888888877653 233333331 13456899
Q ss_pred ccccccccch
Q 007789 540 TKFDTIDDKV 549 (589)
Q Consensus 540 TKlD~~d~k~ 549 (589)
+|+|.+..+.
T Consensus 122 NKID~~~~~~ 131 (298)
T COG1159 122 NKIDKVKPKT 131 (298)
T ss_pred EccccCCcHH
Confidence 9999875443
No 495
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.82 E-value=0.00015 Score=67.01 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAg 405 (589)
+|+|+|..||||||+++.|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 789999999999999999975
No 496
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.81 E-value=0.00032 Score=70.47 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=33.5
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
++.|. ++.|.|++|+||||++..++.-...++.+|++.+.+
T Consensus 22 ~~~g~--~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 22 IPFPS--LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CcCCc--EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 45667 999999999999999999975444468899888775
No 497
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.81 E-value=0.00012 Score=71.98 Aligned_cols=169 Identities=21% Similarity=0.271 Sum_probs=103.6
Q ss_pred CCc-eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCC---CCHHHHHHH
Q 007789 381 RKP-YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE---KDPAIVAKE 456 (589)
Q Consensus 381 Gep-~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~---~d~~~ia~~ 456 (589)
.+| ..|.+.||.||||||++-+++..++.. .++.+...|++.----+.++. ..+.+......+ -.++.....
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~---~~g~~i~~v~TG~~CH~da~m~~~ 85 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRK---LPGEPIIGVETGKGCHLDASMNLE 85 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHh---CCCCeeEEeccCCccCCcHHHHHH
Confidence 345 699999999999999999999988765 899999999875322222222 144444332222 235566667
Q ss_pred HHHHhccc--CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007789 457 AIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 534 (589)
Q Consensus 457 al~~a~l~--~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~i 534 (589)
+++.+... ..|.++|.+.| ..-- ...-.|. -.+-++|-+.|.|-|..-. .. -. -..-
T Consensus 86 ai~~l~~~~~~~Dll~iEs~G-NL~~-~~sp~L~-------d~~~v~VidvteGe~~P~K--~g-P~---------i~~a 144 (202)
T COG0378 86 AIEELVLDFPDLDLLFIESVG-NLVC-PFSPDLG-------DHLRVVVIDVTEGEDIPRK--GG-PG---------IFKA 144 (202)
T ss_pred HHHHHhhcCCcCCEEEEecCc-ceec-ccCcchh-------hceEEEEEECCCCCCCccc--CC-Cc---------eeEe
Confidence 77776543 25677776665 2110 0011111 1244555678888775411 00 00 0125
Q ss_pred cEEEEccccccccchhhhhHhHH------HhCCCEEEEe--cCCCcccc
Q 007789 535 DGILLTKFDTIDDKVGAALSMVY------VSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 535 t~IIlTKlD~~d~k~G~als~~~------~~g~PI~fig--~Gq~v~DL 575 (589)
|.++|||.|.+ ..+|+=+.... .-+.||.|+. +||...++
T Consensus 145 DllVInK~DLa-~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 145 DLLVINKTDLA-PYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred eEEEEehHHhH-HHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHH
Confidence 78999999997 78888444432 2478999985 78887765
No 498
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.80 E-value=0.00024 Score=73.03 Aligned_cols=145 Identities=20% Similarity=0.228 Sum_probs=74.8
Q ss_pred EEEEecCCCcHHHHHHHHHHhHh--hCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 386 VVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 386 I~LVGpNGvGKTTlLakLAgll~--~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
|+|+|..|||||||++.|.+..- ...|+|. .+..+.... ++.+ .+...+.. .+..+..
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~-~g~~~~d~~--~~e~--~r~~ti~~---------------~~~~~~~ 61 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGAIDRLGSVE-DGTTVSDYD--PEEI--KRKMSIST---------------SVAPLEW 61 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCccCCeec-CCcccCCCC--HHHH--hhcccccc---------------eeEEEEE
Confidence 78999999999999999976321 1223432 121110000 0000 00000000 0111222
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
.++...++||+|...-.....+++. ..|.+++|-+++.|...... ..+ +.+ .... ..-.+++||+|
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~------~aD~~i~Vvd~~~g~~~~~~-~~~-~~~---~~~~---~p~iivvNK~D 127 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALR------AADAALVVVSAQSGVEVGTE-KLW-EFA---DEAG---IPRIIFINKMD 127 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHH------HCCEEEEEEeCCCCCCHHHH-HHH-HHH---HHcC---CCEEEEEECCc
Confidence 3566788999987532223334443 67888888889888765432 222 222 2221 23558999999
Q ss_pred ccccchhhhh-HhHHHhCCCEE
Q 007789 544 TIDDKVGAAL-SMVYVSGAPVM 564 (589)
Q Consensus 544 ~~d~k~G~al-s~~~~~g~PI~ 564 (589)
......-..+ .+....+.++.
T Consensus 128 ~~~~~~~~~~~~l~~~~~~~~~ 149 (268)
T cd04170 128 RERADFDKTLAALQEAFGRPVV 149 (268)
T ss_pred cCCCCHHHHHHHHHHHhCCCeE
Confidence 8744333333 33344566544
No 499
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.80 E-value=6.8e-05 Score=70.08 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhHh
Q 007789 386 VVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 386 I~LVGpNGvGKTTlLakLAgll~ 408 (589)
|+|+|++|||||||++.|++...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~ 24 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcc
Confidence 78999999999999999987543
No 500
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.79 E-value=0.00021 Score=67.62 Aligned_cols=133 Identities=23% Similarity=0.271 Sum_probs=72.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 464 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~ 464 (589)
.|+|+|.+|||||||+++|+|..... + ....+.+.. .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~------------~-----------~~~~v~~~~----~---------------- 39 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA------------R-----------KTQAVEFND----K---------------- 39 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC------------c-----------cceEEEECC----C----------------
Confidence 68999999999999999998632100 0 000111100 0
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
.++||+|--.-+....+++.. ....+|.+++|-+++.+..... ..+..+. . . ..-.++++|.|.
T Consensus 40 ----~~iDtpG~~~~~~~~~~~~~~--~~~~ad~il~v~d~~~~~s~~~------~~~~~~~-~--~-~~ii~v~nK~Dl 103 (158)
T PRK15467 40 ----GDIDTPGEYFSHPRWYHALIT--TLQDVDMLIYVHGANDPESRLP------AGLLDIG-V--S-KRQIAVISKTDM 103 (158)
T ss_pred ----CcccCCccccCCHHHHHHHHH--HHhcCCEEEEEEeCCCcccccC------HHHHhcc-C--C-CCeEEEEEcccc
Confidence 147888842212222222221 1238899999877776643221 1111111 1 1 224699999998
Q ss_pred cccchhhhhHhHHHhCC--CEEEEe--cCCCccccc
Q 007789 545 IDDKVGAALSMVYVSGA--PVMFVG--CGQSYTDLK 576 (589)
Q Consensus 545 ~d~k~G~als~~~~~g~--PI~fig--~Gq~v~DL~ 576 (589)
.+...=.+.......+. |+.++. +|+++.+|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 104 PDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred CcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 54333333444445554 888886 577776543
Done!