Query 007789
Match_columns 589
No_of_seqs 458 out of 3606
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fh5_A Signal recognition part 100.0 1.8E-43 6.1E-48 338.9 11.4 142 1-151 10-161 (185)
2 3e70_C DPA, signal recognition 100.0 2E-38 6.8E-43 332.5 21.3 251 325-589 42-324 (328)
3 3dm5_A SRP54, signal recogniti 100.0 1.1E-37 3.7E-42 337.8 25.2 265 314-589 7-295 (443)
4 3kl4_A SRP54, signal recogniti 100.0 5.3E-37 1.8E-41 332.1 24.0 263 316-589 5-294 (433)
5 2yhs_A FTSY, cell division pro 100.0 3.7E-37 1.2E-41 336.8 21.1 242 326-589 219-494 (503)
6 3b9q_A Chloroplast SRP recepto 100.0 8.6E-37 2.9E-41 316.6 22.0 249 320-589 17-302 (302)
7 2og2_A Putative signal recogni 100.0 1.2E-36 4E-41 322.5 23.2 238 334-589 85-359 (359)
8 1rj9_A FTSY, signal recognitio 100.0 6.7E-36 2.3E-40 310.2 22.5 261 317-589 11-303 (304)
9 2ffh_A Protein (FFH); SRP54, s 100.0 6.3E-35 2.2E-39 315.3 25.4 259 316-589 8-293 (425)
10 1vma_A Cell division protein F 100.0 7.5E-35 2.6E-39 302.7 22.6 252 318-589 31-305 (306)
11 1j8m_F SRP54, signal recogniti 100.0 1.5E-34 5E-39 299.2 21.8 262 314-589 4-295 (297)
12 1zu4_A FTSY; GTPase, signal re 100.0 2.2E-34 7.4E-39 300.9 20.4 256 317-589 18-310 (320)
13 1ls1_A Signal recognition part 100.0 1E-32 3.5E-37 285.0 24.0 258 317-589 9-293 (295)
14 2xxa_A Signal recognition part 100.0 1.5E-31 5.2E-36 290.0 26.9 264 315-589 7-296 (433)
15 2v3c_C SRP54, signal recogniti 100.0 8.1E-31 2.8E-35 284.2 20.6 263 314-589 5-294 (432)
16 2j37_W Signal recognition part 100.0 3.1E-30 1.1E-34 284.1 22.0 262 316-588 9-295 (504)
17 2px0_A Flagellar biosynthesis 100.0 5.1E-28 1.8E-32 250.0 19.3 189 384-589 106-296 (296)
18 4g1u_C Hemin import ATP-bindin 99.9 1.9E-24 6.3E-29 220.2 12.8 188 368-573 24-228 (266)
19 3tui_C Methionine import ATP-b 99.9 9.6E-25 3.3E-29 231.4 10.6 184 368-573 41-244 (366)
20 3tif_A Uncharacterized ABC tra 99.9 5.5E-25 1.9E-29 220.0 7.5 183 368-573 18-225 (235)
21 3gfo_A Cobalt import ATP-bindi 99.9 6.2E-25 2.1E-29 224.8 7.9 179 369-572 22-223 (275)
22 2pcj_A ABC transporter, lipopr 99.9 6.3E-25 2.2E-29 217.9 7.3 161 368-541 17-198 (224)
23 3fvq_A Fe(3+) IONS import ATP- 99.9 2.3E-24 7.9E-29 228.2 11.0 162 368-541 17-197 (359)
24 1g6h_A High-affinity branched- 99.9 2.8E-24 9.7E-29 217.5 10.8 160 369-541 21-211 (257)
25 2olj_A Amino acid ABC transpor 99.9 2.9E-24 9.9E-29 218.5 9.7 181 369-572 38-238 (263)
26 1b0u_A Histidine permease; ABC 99.9 1.3E-24 4.4E-29 220.7 6.9 181 369-572 20-232 (262)
27 3rlf_A Maltose/maltodextrin im 99.9 2.8E-24 9.5E-29 229.1 9.6 162 368-541 16-192 (381)
28 1ji0_A ABC transporter; ATP bi 99.9 4.2E-24 1.4E-28 214.1 10.2 181 369-572 20-218 (240)
29 1vpl_A ABC transporter, ATP-bi 99.9 2.8E-24 9.7E-29 217.7 8.8 160 369-541 29-204 (256)
30 1v43_A Sugar-binding transport 99.9 1.1E-23 3.6E-28 224.2 11.0 161 369-541 25-200 (372)
31 2yz2_A Putative ABC transporte 99.9 7.9E-24 2.7E-28 215.3 9.5 161 368-541 20-196 (266)
32 3d31_A Sulfate/molybdate ABC t 99.9 3.7E-24 1.3E-28 225.9 7.3 158 370-541 15-186 (348)
33 1z47_A CYSA, putative ABC-tran 99.9 6.8E-24 2.3E-28 224.4 9.3 162 368-541 28-204 (355)
34 1sgw_A Putative ABC transporte 99.9 2E-24 6.9E-29 213.3 4.8 158 369-541 23-191 (214)
35 2onk_A Molybdate/tungstate ABC 99.9 4.7E-24 1.6E-28 214.1 7.5 159 370-541 14-185 (240)
36 2ihy_A ABC transporter, ATP-bi 99.9 8.5E-24 2.9E-28 216.8 9.5 160 369-541 35-221 (279)
37 2yyz_A Sugar ABC transporter, 99.9 7.9E-24 2.7E-28 224.3 9.2 162 368-541 16-192 (359)
38 2it1_A 362AA long hypothetical 99.9 9.3E-24 3.2E-28 224.0 9.0 162 368-541 16-192 (362)
39 1oxx_K GLCV, glucose, ABC tran 99.9 4.4E-24 1.5E-28 225.8 6.3 160 370-541 20-199 (353)
40 1g29_1 MALK, maltose transport 99.9 8.4E-24 2.9E-28 225.1 8.3 162 368-541 16-198 (372)
41 2qi9_C Vitamin B12 import ATP- 99.9 3.9E-23 1.3E-27 208.5 9.6 178 369-572 14-212 (249)
42 2nq2_C Hypothetical ABC transp 99.9 5.3E-23 1.8E-27 207.9 8.9 177 369-572 19-207 (253)
43 2ff7_A Alpha-hemolysin translo 99.9 3.6E-23 1.2E-27 208.4 7.6 155 368-541 22-202 (247)
44 2d2e_A SUFC protein; ABC-ATPas 99.9 6.9E-23 2.4E-27 206.5 8.2 161 368-541 16-201 (250)
45 2pjz_A Hypothetical protein ST 99.9 1E-22 3.5E-27 207.2 9.4 152 369-541 19-183 (263)
46 2ixe_A Antigen peptide transpo 99.9 9.9E-23 3.4E-27 207.9 8.8 180 368-572 32-235 (271)
47 1mv5_A LMRA, multidrug resista 99.9 6.6E-23 2.3E-27 205.7 7.0 177 368-573 15-217 (243)
48 2zu0_C Probable ATP-dependent 99.9 1.3E-22 4.5E-27 206.5 8.5 160 369-541 34-222 (267)
49 3nh6_A ATP-binding cassette SU 99.9 1.7E-22 5.8E-27 209.8 6.8 175 369-573 68-268 (306)
50 2ghi_A Transport protein; mult 99.9 5.6E-22 1.9E-26 201.1 8.8 153 369-541 34-212 (260)
51 2pze_A Cystic fibrosis transme 99.8 6.4E-22 2.2E-26 196.9 7.6 171 368-572 21-208 (229)
52 2cbz_A Multidrug resistance-as 99.8 7.5E-22 2.6E-26 197.5 7.2 156 368-541 18-187 (237)
53 3gd7_A Fusion complex of cysti 99.8 6.4E-22 2.2E-26 211.7 6.3 153 368-541 34-212 (390)
54 2bbs_A Cystic fibrosis transme 99.8 4.4E-21 1.5E-25 197.7 6.3 169 369-572 52-237 (290)
55 3b5x_A Lipid A export ATP-bind 99.8 1.9E-20 6.6E-25 209.7 9.8 175 369-572 357-557 (582)
56 2yl4_A ATP-binding cassette SU 99.8 2.5E-20 8.6E-25 209.3 9.1 157 369-541 358-540 (595)
57 3b60_A Lipid A export ATP-bind 99.8 2E-20 7E-25 209.5 8.0 155 369-541 357-537 (582)
58 4a82_A Cystic fibrosis transme 99.8 1.8E-20 6E-25 209.9 6.8 174 369-572 355-554 (578)
59 3qf4_A ABC transporter, ATP-bi 99.8 4.5E-20 1.5E-24 207.1 7.5 175 369-573 357-557 (587)
60 3qf4_B Uncharacterized ABC tra 99.8 2.3E-20 8E-25 209.7 4.4 175 369-573 369-569 (598)
61 3ozx_A RNAse L inhibitor; ATP 99.8 8.4E-20 2.9E-24 202.9 6.4 154 371-541 284-444 (538)
62 3bk7_A ABC transporter ATP-bin 99.8 8.4E-20 2.9E-24 205.6 4.3 155 371-541 372-530 (607)
63 1yqt_A RNAse L inhibitor; ATP- 99.8 9.7E-20 3.3E-24 202.5 2.3 155 371-541 302-460 (538)
64 1yqt_A RNAse L inhibitor; ATP- 99.8 2.6E-19 8.9E-24 199.0 4.9 159 369-541 36-216 (538)
65 3bk7_A ABC transporter ATP-bin 99.7 5E-19 1.7E-23 199.3 4.6 159 369-541 106-286 (607)
66 3j16_B RLI1P; ribosome recycli 99.7 1.8E-18 6E-23 194.7 7.5 154 369-541 361-526 (608)
67 3ux8_A Excinuclease ABC, A sub 99.7 3.2E-18 1.1E-22 194.6 9.2 162 367-541 30-262 (670)
68 4f4c_A Multidrug resistance pr 99.7 6.1E-18 2.1E-22 205.3 9.3 176 369-573 1093-1295(1321)
69 3j16_B RLI1P; ribosome recycli 99.7 5.9E-18 2E-22 190.5 7.3 156 371-541 94-279 (608)
70 3g5u_A MCG1178, multidrug resi 99.7 1.1E-17 3.8E-22 202.5 8.8 156 369-541 1047-1228(1284)
71 3ozx_A RNAse L inhibitor; ATP 99.7 3.3E-18 1.1E-22 190.2 3.4 146 379-541 23-195 (538)
72 3g5u_A MCG1178, multidrug resi 99.7 6.5E-18 2.2E-22 204.6 5.7 154 369-541 404-583 (1284)
73 4f4c_A Multidrug resistance pr 99.7 1.5E-17 5.1E-22 201.9 8.2 154 369-541 432-611 (1321)
74 2iw3_A Elongation factor 3A; a 99.7 2.5E-17 8.6E-22 192.8 7.3 59 369-431 687-745 (986)
75 2iw3_A Elongation factor 3A; a 99.6 5.6E-16 1.9E-20 181.6 9.7 143 369-541 449-603 (986)
76 3ux8_A Excinuclease ABC, A sub 99.6 3.3E-15 1.1E-19 169.9 11.4 76 455-541 524-604 (670)
77 1tq4_A IIGP1, interferon-induc 99.6 6.5E-17 2.2E-21 174.2 -3.2 135 385-526 71-213 (413)
78 4gp7_A Metallophosphoesterase; 99.6 2E-16 6.7E-21 149.6 0.0 139 373-541 1-157 (171)
79 2npi_A Protein CLP1; CLP1-PCF1 99.6 9.6E-17 3.3E-21 175.2 -3.6 179 373-572 130-329 (460)
80 3b85_A Phosphate starvation-in 99.5 3.1E-16 1.1E-20 154.0 -0.7 138 369-545 14-161 (208)
81 3sop_A Neuronal-specific septi 99.5 2.9E-15 9.9E-20 152.6 2.5 140 384-545 3-153 (270)
82 4aby_A DNA repair protein RECN 99.5 2.2E-14 7.4E-19 152.9 6.9 85 473-580 296-386 (415)
83 2vf7_A UVRA2, excinuclease ABC 99.4 5.1E-14 1.8E-18 163.3 7.2 78 453-541 709-791 (842)
84 1ye8_A Protein THEP1, hypothet 99.4 9.7E-14 3.3E-18 132.8 6.4 121 385-541 2-138 (178)
85 2r6f_A Excinuclease ABC subuni 99.4 1.4E-13 4.8E-18 160.5 8.1 76 455-541 826-906 (972)
86 3pih_A Uvrabc system protein A 99.4 5.9E-13 2E-17 155.6 10.7 77 454-541 785-866 (916)
87 2vx8_A Nucleoporin-like protei 99.4 4.7E-13 1.6E-17 127.5 7.8 113 1-123 44-159 (169)
88 2qm8_A GTPase/ATPase; G protei 99.4 6.5E-12 2.2E-16 131.7 17.1 176 341-545 10-206 (337)
89 2ygr_A Uvrabc system protein A 99.4 3.9E-13 1.3E-17 157.3 8.4 76 455-541 844-924 (993)
90 1z6g_A Guanylate kinase; struc 99.3 5.3E-15 1.8E-19 145.3 -8.4 155 370-541 12-192 (218)
91 3aez_A Pantothenate kinase; tr 99.3 2.3E-13 7.9E-18 141.4 1.4 120 378-511 87-209 (312)
92 2pt7_A CAG-ALFA; ATPase, prote 99.3 1.6E-12 5.4E-17 136.0 5.4 92 370-507 160-251 (330)
93 3qf7_A RAD50; ABC-ATPase, ATPa 99.3 5.4E-12 1.8E-16 133.7 8.1 84 472-572 279-363 (365)
94 1e69_A Chromosome segregation 99.2 1.5E-11 5.1E-16 127.7 9.0 63 472-542 219-281 (322)
95 2eyu_A Twitching motility prot 99.2 3E-11 1E-15 122.3 9.8 98 369-514 15-113 (261)
96 2v9p_A Replication protein E1; 99.2 6.5E-12 2.2E-16 130.2 3.1 115 369-514 114-229 (305)
97 1cr0_A DNA primase/helicase; R 99.2 4.6E-11 1.6E-15 121.7 9.1 53 367-421 21-74 (296)
98 2p67_A LAO/AO transport system 99.1 1.6E-10 5.6E-15 121.0 12.3 182 341-545 11-207 (341)
99 1znw_A Guanylate kinase, GMP k 99.1 8.3E-13 2.8E-17 128.0 -5.1 157 369-541 10-186 (207)
100 1tf7_A KAIC; homohexamer, hexa 99.1 1.2E-10 4E-15 128.8 11.2 143 368-541 25-183 (525)
101 2w0m_A SSO2452; RECA, SSPF, un 99.1 2.2E-10 7.5E-15 110.6 11.7 154 368-543 9-168 (235)
102 3thx_B DNA mismatch repair pro 99.1 1.3E-11 4.5E-16 144.4 2.6 136 369-545 661-798 (918)
103 2ehv_A Hypothetical protein PH 99.1 1.6E-10 5.6E-15 113.2 9.8 142 377-542 26-181 (251)
104 1tf7_A KAIC; homohexamer, hexa 99.0 3E-10 1E-14 125.5 9.7 133 377-542 277-416 (525)
105 2www_A Methylmalonic aciduria 99.0 2.8E-09 9.5E-14 112.1 16.0 138 383-545 74-225 (349)
106 2o8b_B DNA mismatch repair pro 99.0 1.5E-10 5.1E-15 137.2 6.9 130 370-542 771-911 (1022)
107 4a74_A DNA repair and recombin 99.0 3.8E-10 1.3E-14 109.2 8.1 44 377-422 21-71 (231)
108 1ewq_A DNA mismatch repair pro 99.0 1.6E-10 5.5E-15 133.2 6.3 128 370-544 568-699 (765)
109 3thx_A DNA mismatch repair pro 99.0 2.6E-10 8.9E-15 133.8 7.9 136 370-545 651-787 (934)
110 3p32_A Probable GTPase RV1496/ 99.0 9.9E-10 3.4E-14 115.5 10.9 175 380-576 76-275 (355)
111 1nlf_A Regulatory protein REPA 99.0 2.1E-09 7.1E-14 108.7 12.2 141 377-543 26-181 (279)
112 2i3b_A HCR-ntpase, human cance 99.0 1.4E-10 4.7E-15 112.0 2.2 35 385-421 3-37 (189)
113 1pzn_A RAD51, DNA repair and r 98.9 5.5E-10 1.9E-14 117.6 6.4 51 370-422 119-177 (349)
114 2jeo_A Uridine-cytidine kinase 98.9 2.7E-10 9.4E-15 113.2 3.6 130 368-511 12-148 (245)
115 2qnr_A Septin-2, protein NEDD5 98.9 1.1E-10 3.6E-15 120.5 -0.5 167 369-566 12-194 (301)
116 3qkt_A DNA double-strand break 98.9 3.4E-09 1.2E-13 110.7 10.4 66 471-542 247-313 (339)
117 1wb9_A DNA mismatch repair pro 98.9 9.4E-10 3.2E-14 127.4 5.6 133 370-544 597-731 (800)
118 3jvv_A Twitching mobility prot 98.8 3.7E-09 1.3E-13 111.7 8.2 38 378-417 120-158 (356)
119 1htw_A HI0065; nucleotide-bind 98.8 8.6E-10 3E-14 103.5 2.2 49 370-421 22-70 (158)
120 2obl_A ESCN; ATPase, hydrolase 98.8 1.3E-09 4.5E-14 114.7 3.8 51 368-421 59-109 (347)
121 1pui_A ENGB, probable GTP-bind 98.8 6.7E-10 2.3E-14 106.0 1.4 145 369-527 16-198 (210)
122 1lw7_A Transcriptional regulat 98.8 2.4E-09 8.3E-14 112.8 5.1 45 370-416 157-207 (365)
123 3ec2_A DNA replication protein 98.8 2.8E-08 9.5E-13 93.4 11.7 34 377-412 34-67 (180)
124 2cvh_A DNA repair and recombin 98.8 3.1E-08 1E-12 95.1 11.0 139 369-543 7-156 (220)
125 3asz_A Uridine kinase; cytidin 98.7 2E-10 6.7E-15 110.7 -5.0 128 380-523 5-144 (211)
126 2dpy_A FLII, flagellum-specifi 98.7 3.4E-09 1.2E-13 114.9 3.7 49 368-419 145-193 (438)
127 2ewv_A Twitching motility prot 98.7 2E-08 6.9E-13 106.5 8.6 47 370-420 127-174 (372)
128 2o5v_A DNA replication and rep 98.7 3.2E-08 1.1E-12 104.7 8.9 61 473-542 266-330 (359)
129 2qag_C Septin-7; cell cycle, c 98.7 4E-09 1.4E-13 113.7 2.0 146 369-546 25-181 (418)
130 1n0w_A DNA repair protein RAD5 98.7 2E-08 6.9E-13 97.9 6.7 135 377-542 20-173 (243)
131 3szr_A Interferon-induced GTP- 98.7 3.8E-09 1.3E-13 118.9 1.3 37 385-421 47-84 (608)
132 2f1r_A Molybdopterin-guanine d 98.6 2.9E-09 9.9E-14 101.3 -0.8 101 385-489 4-120 (171)
133 2qag_B Septin-6, protein NEDD5 98.6 2.8E-08 9.4E-13 107.4 5.2 179 371-568 30-240 (427)
134 1s96_A Guanylate kinase, GMP k 98.6 6.4E-08 2.2E-12 95.3 6.7 42 377-420 12-55 (219)
135 2kjq_A DNAA-related protein; s 98.5 1.5E-07 5.2E-12 87.0 7.8 30 380-411 35-64 (149)
136 1odf_A YGR205W, hypothetical 3 98.5 2.2E-08 7.5E-13 102.8 2.0 125 381-512 29-168 (290)
137 3euj_A Chromosome partition pr 98.5 3.3E-08 1.1E-12 108.3 3.0 52 368-422 17-68 (483)
138 2rcn_A Probable GTPase ENGC; Y 98.4 2.4E-08 8.3E-13 105.6 -0.4 112 371-487 206-328 (358)
139 2bbw_A Adenylate kinase 4, AK4 98.4 4.1E-08 1.4E-12 97.3 0.3 38 383-420 27-67 (246)
140 1sxj_E Activator 1 40 kDa subu 98.4 6.1E-07 2.1E-11 92.7 8.6 38 383-421 37-75 (354)
141 2gza_A Type IV secretion syste 98.4 1.1E-07 3.8E-12 100.3 3.1 49 370-420 164-212 (361)
142 3lda_A DNA repair protein RAD5 98.4 4.1E-07 1.4E-11 97.5 7.2 136 377-542 174-327 (400)
143 1sq5_A Pantothenate kinase; P- 98.3 1.8E-07 6.2E-12 96.4 3.8 42 379-422 78-121 (308)
144 2dr3_A UPF0273 protein PH0284; 98.3 4.3E-06 1.5E-10 81.3 13.1 50 370-421 11-61 (247)
145 2e87_A Hypothetical protein PH 98.3 5.5E-07 1.9E-11 94.5 7.1 150 383-576 167-327 (357)
146 3tqc_A Pantothenate kinase; bi 98.3 3.2E-07 1.1E-11 95.6 5.0 45 380-424 89-135 (321)
147 4dzz_A Plasmid partitioning pr 98.3 9E-06 3.1E-10 77.0 14.5 159 385-564 3-162 (206)
148 1yrb_A ATP(GTP)binding protein 98.3 1.3E-06 4.3E-11 86.5 8.6 155 383-545 14-184 (262)
149 2yv5_A YJEQ protein; hydrolase 98.3 7.9E-08 2.7E-12 99.0 -0.4 105 378-485 162-300 (302)
150 3tr0_A Guanylate kinase, GMP k 98.3 3.8E-07 1.3E-11 86.7 4.1 52 376-433 2-62 (205)
151 3vaa_A Shikimate kinase, SK; s 98.3 6.4E-07 2.2E-11 85.7 5.2 41 365-407 9-49 (199)
152 1oix_A RAS-related protein RAB 98.2 1.2E-06 3.9E-11 83.1 6.2 126 383-522 29-187 (191)
153 3lnc_A Guanylate kinase, GMP k 98.2 3.4E-07 1.2E-11 89.6 2.1 37 370-408 16-53 (231)
154 2wsm_A Hydrogenase expression/ 98.2 3.8E-06 1.3E-10 80.7 9.1 164 383-575 30-204 (221)
155 3t34_A Dynamin-related protein 98.2 2.1E-06 7.2E-11 90.0 7.4 41 369-414 25-67 (360)
156 3pih_A Uvrabc system protein A 98.2 4E-07 1.4E-11 106.7 2.1 133 398-541 383-524 (916)
157 1zp6_A Hypothetical protein AT 98.1 1.6E-06 5.5E-11 81.5 4.4 40 378-421 6-45 (191)
158 2dy1_A Elongation factor G; tr 98.1 4.8E-06 1.6E-10 94.7 8.7 133 377-545 5-139 (665)
159 2oap_1 GSPE-2, type II secreti 98.1 9.2E-07 3.1E-11 97.7 2.6 50 370-421 249-298 (511)
160 1udx_A The GTP-binding protein 98.1 1.1E-07 3.7E-12 102.5 -5.1 33 372-406 148-180 (416)
161 2zr9_A Protein RECA, recombina 98.0 5.9E-06 2E-10 86.9 7.8 41 378-420 58-98 (349)
162 1f2t_B RAD50 ABC-ATPase; DNA d 98.0 4.2E-06 1.4E-10 77.6 5.7 61 471-542 56-122 (148)
163 1p9r_A General secretion pathw 98.0 2.1E-06 7.2E-11 92.5 3.9 41 379-421 165-205 (418)
164 3c8u_A Fructokinase; YP_612366 98.0 2.4E-06 8.3E-11 82.3 3.8 39 379-419 20-61 (208)
165 2f9l_A RAB11B, member RAS onco 98.0 7.7E-06 2.6E-10 77.5 7.0 37 384-420 6-53 (199)
166 1rz3_A Hypothetical protein rb 98.0 4.4E-06 1.5E-10 80.2 5.1 41 383-423 22-62 (201)
167 2r6a_A DNAB helicase, replicat 98.0 1.5E-05 5.2E-10 86.3 10.0 161 368-543 190-364 (454)
168 1u0l_A Probable GTPase ENGC; p 98.0 1.7E-06 5.9E-11 88.8 2.2 45 377-423 165-212 (301)
169 1lvg_A Guanylate kinase, GMP k 98.0 2.7E-06 9.3E-11 81.8 3.3 27 380-408 3-29 (198)
170 1hyq_A MIND, cell division inh 98.0 8.7E-05 3E-09 73.4 14.4 163 385-564 4-193 (263)
171 3a00_A Guanylate kinase, GMP k 98.0 2.4E-06 8.1E-11 81.0 2.7 28 385-412 3-30 (186)
172 4eun_A Thermoresistant glucoki 97.9 6.4E-06 2.2E-10 78.8 5.1 39 378-422 26-64 (200)
173 2wji_A Ferrous iron transport 97.9 2.5E-05 8.6E-10 71.6 8.7 142 384-574 4-154 (165)
174 2wjg_A FEOB, ferrous iron tran 97.9 3E-05 1E-09 71.9 8.7 143 383-574 7-158 (188)
175 3ea0_A ATPase, para family; al 97.9 0.00013 4.4E-09 71.0 13.5 165 384-564 5-202 (245)
176 2hf9_A Probable hydrogenase ni 97.9 3.8E-05 1.3E-09 73.9 9.4 169 383-575 38-214 (226)
177 3lxx_A GTPase IMAP family memb 97.9 3.5E-05 1.2E-09 75.4 9.3 27 382-408 28-54 (239)
178 2x8a_A Nuclear valosin-contain 97.9 6.4E-06 2.2E-10 83.5 3.7 50 367-422 32-81 (274)
179 1qhl_A Protein (cell division 97.9 6E-07 2.1E-11 89.1 -3.8 37 385-421 29-65 (227)
180 1z0f_A RAB14, member RAS oncog 97.8 4.3E-05 1.5E-09 69.7 8.8 148 383-574 15-167 (179)
181 1t9h_A YLOQ, probable GTPase E 97.8 3E-06 1E-10 87.8 0.8 46 376-423 168-216 (307)
182 3uie_A Adenylyl-sulfate kinase 97.8 4.5E-06 1.6E-10 79.8 1.9 49 370-421 14-64 (200)
183 3iev_A GTP-binding protein ERA 97.8 0.00014 4.8E-09 74.7 13.1 124 380-545 7-135 (308)
184 1mky_A Probable GTP-binding pr 97.8 7.5E-05 2.6E-09 80.4 11.3 26 382-407 179-204 (439)
185 2bdt_A BH3686; alpha-beta prot 97.8 8.7E-06 3E-10 76.7 3.4 34 385-421 4-37 (189)
186 1u8z_A RAS-related protein RAL 97.8 0.00012 4.1E-09 65.7 10.9 148 383-574 4-156 (168)
187 2hxs_A RAB-26, RAS-related pro 97.8 5.1E-05 1.7E-09 69.4 8.5 152 383-574 6-162 (178)
188 1g3q_A MIND ATPase, cell divis 97.8 0.00049 1.7E-08 66.6 16.0 163 384-564 3-194 (237)
189 2bov_A RAla, RAS-related prote 97.8 0.00016 5.3E-09 67.9 11.9 149 383-575 14-167 (206)
190 3tkl_A RAS-related protein RAB 97.8 0.00028 9.7E-09 65.5 13.5 149 383-575 16-169 (196)
191 1m2o_B GTP-binding protein SAR 97.8 2.1E-05 7.2E-10 74.1 5.8 33 370-405 13-45 (190)
192 2dyk_A GTP-binding protein; GT 97.8 2E-05 6.9E-10 70.8 5.3 89 467-567 50-142 (161)
193 2ged_A SR-beta, signal recogni 97.8 4.3E-05 1.5E-09 71.3 7.7 24 383-406 48-71 (193)
194 2ce2_X GTPase HRAS; signaling 97.8 0.00011 3.9E-09 65.5 10.2 147 384-574 4-154 (166)
195 2a9k_A RAS-related protein RAL 97.8 0.00033 1.1E-08 64.1 13.6 149 383-575 18-171 (187)
196 3clv_A RAB5 protein, putative; 97.8 6.2E-05 2.1E-09 69.8 8.3 98 466-575 93-194 (208)
197 1cp2_A CP2, nitrogenase iron p 97.7 0.00052 1.8E-08 67.9 15.6 172 384-564 2-205 (269)
198 2j41_A Guanylate kinase; GMP, 97.7 1.2E-05 4.1E-10 76.3 3.4 33 378-412 3-35 (207)
199 3kta_B Chromosome segregation 97.7 5.1E-05 1.8E-09 72.0 7.4 64 472-543 64-127 (173)
200 2oil_A CATX-8, RAS-related pro 97.7 5.2E-05 1.8E-09 70.8 7.3 149 383-575 25-178 (193)
201 3iby_A Ferrous iron transport 97.7 5E-05 1.7E-09 76.1 7.6 140 385-574 3-156 (256)
202 1nrj_B SR-beta, signal recogni 97.7 0.00012 4.2E-09 69.8 9.9 124 382-547 11-135 (218)
203 2ius_A DNA translocase FTSK; n 97.7 1.1E-05 3.8E-10 89.0 2.9 152 374-543 160-342 (512)
204 2fn4_A P23, RAS-related protei 97.7 0.0003 1E-08 64.1 12.1 24 383-406 9-32 (181)
205 1ega_A Protein (GTP-binding pr 97.7 4.3E-05 1.5E-09 78.4 7.1 23 384-406 9-31 (301)
206 3kta_A Chromosome segregation 97.7 2.1E-05 7.2E-10 73.5 4.4 39 372-413 18-56 (182)
207 1nrj_A Signal recognition part 97.7 4.9E-05 1.7E-09 69.1 6.5 77 1-77 1-93 (158)
208 2erx_A GTP-binding protein DI- 97.7 0.0004 1.4E-08 62.6 12.7 22 384-405 4-25 (172)
209 1r2q_A RAS-related protein RAB 97.7 0.00012 4E-09 66.0 9.0 23 383-405 6-28 (170)
210 4dcu_A GTP-binding protein ENG 97.7 6.1E-05 2.1E-09 81.5 8.3 114 384-545 24-144 (456)
211 2ygr_A Uvrabc system protein A 97.7 3.8E-05 1.3E-09 90.3 7.0 73 458-541 505-581 (993)
212 1f6b_A SAR1; gtpases, N-termin 97.7 2.2E-05 7.6E-10 74.5 4.2 34 369-405 14-47 (198)
213 3la6_A Tyrosine-protein kinase 97.7 0.00019 6.5E-09 73.2 11.4 148 383-545 92-267 (286)
214 1kgd_A CASK, peripheral plasma 97.7 1.5E-05 5.3E-10 75.0 3.0 35 380-416 4-39 (180)
215 2r6f_A Excinuclease ABC subuni 97.7 3.5E-05 1.2E-09 90.4 6.5 73 458-541 488-564 (972)
216 1kao_A RAP2A; GTP-binding prot 97.7 0.00044 1.5E-08 61.9 12.4 22 384-405 4-25 (167)
217 2ph1_A Nucleotide-binding prot 97.7 0.00046 1.6E-08 68.6 13.8 168 384-564 19-223 (262)
218 4dsu_A GTPase KRAS, isoform 2B 97.7 0.00019 6.4E-09 66.1 10.2 149 383-575 4-156 (189)
219 3kkq_A RAS-related protein M-R 97.7 0.00023 7.8E-09 65.6 10.6 98 468-574 68-171 (183)
220 3end_A Light-independent proto 97.7 0.00043 1.5E-08 70.3 13.6 169 383-565 41-242 (307)
221 1z0j_A RAB-22, RAS-related pro 97.6 0.00023 7.9E-09 64.2 10.3 23 384-406 7-29 (170)
222 3bfv_A CAPA1, CAPB2, membrane 97.6 0.00036 1.2E-08 70.5 12.6 148 383-545 82-257 (271)
223 2vp4_A Deoxynucleoside kinase; 97.6 1.9E-05 6.6E-10 77.3 3.1 40 376-421 15-54 (230)
224 1ky3_A GTP-binding protein YPT 97.6 0.00018 6.3E-09 65.6 9.5 23 383-405 8-30 (182)
225 3hr8_A Protein RECA; alpha and 97.6 0.00021 7E-09 75.4 11.0 39 378-418 58-96 (356)
226 1ek0_A Protein (GTP-binding pr 97.6 0.00037 1.3E-08 62.7 11.2 22 384-405 4-25 (170)
227 2orw_A Thymidine kinase; TMTK, 97.6 4.9E-06 1.7E-10 79.5 -1.5 161 381-573 3-170 (184)
228 1z06_A RAS-related protein RAB 97.6 0.00018 6E-09 67.1 9.3 143 383-567 20-165 (189)
229 1z2a_A RAS-related protein RAB 97.6 8.4E-05 2.9E-09 67.0 6.9 147 383-574 5-156 (168)
230 3t1o_A Gliding protein MGLA; G 97.6 0.00031 1.1E-08 65.0 10.9 160 384-575 15-182 (198)
231 2bcg_Y Protein YP2, GTP-bindin 97.6 3.2E-05 1.1E-09 73.2 4.0 149 383-575 8-161 (206)
232 3a1s_A Iron(II) transport prot 97.6 8.5E-05 2.9E-09 74.4 7.1 142 383-574 5-156 (258)
233 1jwy_B Dynamin A GTPase domain 97.6 0.00017 5.8E-09 73.2 9.3 22 385-406 26-47 (315)
234 2efe_B Small GTP-binding prote 97.6 0.0002 6.7E-09 65.6 8.8 141 383-567 12-155 (181)
235 3b1v_A Ferrous iron uptake tra 97.6 0.00017 5.8E-09 73.0 9.1 141 383-574 3-153 (272)
236 2fg5_A RAB-22B, RAS-related pr 97.6 0.00022 7.6E-09 66.8 9.3 147 383-573 23-174 (192)
237 3q9l_A Septum site-determining 97.6 0.00081 2.8E-08 65.9 13.8 168 384-564 3-208 (260)
238 3k9g_A PF-32 protein; ssgcid, 97.6 0.00075 2.6E-08 66.9 13.7 145 383-544 27-209 (267)
239 2g6b_A RAS-related protein RAB 97.6 9.9E-05 3.4E-09 67.6 6.7 149 383-574 10-163 (180)
240 2vf7_A UVRA2, excinuclease ABC 97.6 5.2E-05 1.8E-09 88.2 5.9 74 457-541 362-439 (842)
241 1g16_A RAS-related protein SEC 97.6 9.8E-05 3.4E-09 66.7 6.6 148 384-575 4-155 (170)
242 1c1y_A RAS-related protein RAP 97.6 0.00036 1.2E-08 62.7 10.3 22 384-405 4-25 (167)
243 3cio_A ETK, tyrosine-protein k 97.6 0.00026 8.9E-09 72.5 10.5 147 383-545 104-279 (299)
244 2gf0_A GTP-binding protein DI- 97.6 0.00029 1E-08 65.6 10.0 149 383-574 8-160 (199)
245 1ixz_A ATP-dependent metallopr 97.6 2.8E-05 9.7E-10 76.7 3.1 47 369-421 39-85 (254)
246 2afh_E Nitrogenase iron protei 97.6 0.0015 5.2E-08 65.6 15.9 172 384-564 3-208 (289)
247 3izq_1 HBS1P, elongation facto 97.6 7.8E-05 2.7E-09 84.0 6.9 23 383-405 167-189 (611)
248 2y8e_A RAB-protein 6, GH09086P 97.5 0.00027 9.2E-09 64.3 9.3 22 384-405 15-36 (179)
249 3q85_A GTP-binding protein REM 97.5 0.00011 3.6E-09 66.7 6.5 22 384-405 3-24 (169)
250 1iy2_A ATP-dependent metallopr 97.5 3.2E-05 1.1E-09 77.7 3.1 47 369-421 63-109 (278)
251 2h5e_A Peptide chain release f 97.5 0.00028 9.7E-09 78.1 10.8 150 384-563 14-166 (529)
252 3cph_A RAS-related protein SEC 97.5 0.00014 4.9E-09 68.7 7.3 149 383-575 20-172 (213)
253 2gf9_A RAS-related protein RAB 97.5 2.7E-05 9.1E-10 72.7 2.1 148 383-574 22-174 (189)
254 1knq_A Gluconate kinase; ALFA/ 97.5 6.6E-05 2.3E-09 69.6 4.8 37 380-422 7-43 (175)
255 1svi_A GTP-binding protein YSX 97.5 0.00024 8.2E-09 66.1 8.7 24 382-405 22-45 (195)
256 3k53_A Ferrous iron transport 97.5 4.4E-05 1.5E-09 76.5 3.9 141 384-573 4-154 (271)
257 3dz8_A RAS-related protein RAB 97.5 0.0007 2.4E-08 63.2 11.9 147 384-574 24-175 (191)
258 2oze_A ORF delta'; para, walke 97.5 0.0005 1.7E-08 69.3 11.6 150 385-545 36-225 (298)
259 3tau_A Guanylate kinase, GMP k 97.5 4.9E-05 1.7E-09 73.3 3.7 29 379-409 6-34 (208)
260 4ad8_A DNA repair protein RECN 97.5 0.00012 4E-09 80.6 7.0 89 470-581 394-489 (517)
261 1zbd_A Rabphilin-3A; G protein 97.5 0.00028 9.6E-09 66.3 8.6 100 466-575 57-161 (203)
262 2a5j_A RAS-related protein RAB 97.5 0.00017 5.7E-09 67.5 6.9 149 383-575 21-174 (191)
263 3kjh_A CO dehydrogenase/acetyl 97.5 0.0005 1.7E-08 66.5 10.5 36 386-421 3-38 (254)
264 4dcu_A GTP-binding protein ENG 97.5 0.00042 1.4E-08 74.9 10.9 148 382-575 194-359 (456)
265 4e22_A Cytidylate kinase; P-lo 97.5 1.8E-05 6.2E-10 78.9 0.1 35 379-415 25-62 (252)
266 3lxw_A GTPase IMAP family memb 97.5 0.00038 1.3E-08 69.0 9.8 147 382-567 20-183 (247)
267 1wcv_1 SOJ, segregation protei 97.5 0.00036 1.2E-08 69.1 9.6 149 384-545 7-182 (257)
268 1fzq_A ADP-ribosylation factor 97.5 0.00018 6E-09 67.1 6.9 23 383-405 16-38 (181)
269 2lkc_A Translation initiation 97.4 0.00019 6.6E-09 65.5 6.9 23 383-405 8-30 (178)
270 1wf3_A GTP-binding protein; GT 97.4 0.00037 1.3E-08 71.5 9.8 119 385-546 9-131 (301)
271 4dhe_A Probable GTP-binding pr 97.4 0.00042 1.4E-08 66.1 9.6 23 383-405 29-51 (223)
272 2p5s_A RAS and EF-hand domain 97.4 0.00066 2.3E-08 63.9 10.7 24 382-405 27-50 (199)
273 3con_A GTPase NRAS; structural 97.4 0.00024 8.1E-09 66.0 7.5 148 383-574 21-172 (190)
274 3cwq_A Para family chromosome 97.4 0.0021 7.1E-08 62.0 14.4 149 385-563 2-152 (209)
275 3tw8_B RAS-related protein RAB 97.4 0.00024 8.2E-09 64.8 7.4 99 466-575 58-161 (181)
276 1zj6_A ADP-ribosylation factor 97.4 0.00026 9E-09 65.7 7.8 115 382-545 15-130 (187)
277 1nij_A Hypothetical protein YJ 97.4 3.6E-05 1.2E-09 79.6 1.9 37 385-421 6-50 (318)
278 1svm_A Large T antigen; AAA+ f 97.4 6.8E-05 2.3E-09 79.7 4.1 44 368-416 156-199 (377)
279 3nwj_A ATSK2; P loop, shikimat 97.4 3.9E-05 1.3E-09 77.0 2.1 39 368-408 32-73 (250)
280 3cr8_A Sulfate adenylyltranfer 97.4 9.2E-05 3.2E-09 82.4 5.2 39 378-418 366-406 (552)
281 3p26_A Elongation factor 1 alp 97.4 0.00071 2.4E-08 73.8 12.2 24 383-406 33-56 (483)
282 1in4_A RUVB, holliday junction 97.4 1E-05 3.5E-10 83.9 -2.4 35 384-418 52-90 (334)
283 1z08_A RAS-related protein RAB 97.4 0.0002 6.9E-09 64.7 6.6 23 383-405 6-28 (170)
284 1r8s_A ADP-ribosylation factor 97.4 0.00043 1.5E-08 62.3 8.6 113 385-546 2-115 (164)
285 2yvu_A Probable adenylyl-sulfa 97.4 7.6E-05 2.6E-09 70.1 3.7 42 380-423 12-53 (186)
286 2gj8_A MNME, tRNA modification 97.4 7.3E-05 2.5E-09 69.3 3.5 23 384-406 5-27 (172)
287 3reg_A RHO-like small GTPase; 97.4 0.0002 6.9E-09 67.0 6.5 23 383-405 23-45 (194)
288 3bc1_A RAS-related protein RAB 97.4 0.00046 1.6E-08 63.5 8.8 100 466-574 70-174 (195)
289 2hup_A RAS-related protein RAB 97.4 0.00037 1.3E-08 66.1 8.3 99 466-574 78-182 (201)
290 2ew1_A RAS-related protein RAB 97.4 0.00019 6.6E-09 68.5 6.4 149 383-575 26-179 (201)
291 2nzj_A GTP-binding protein REM 97.4 0.00021 7.1E-09 65.0 6.3 23 383-405 4-26 (175)
292 2fv8_A H6, RHO-related GTP-bin 97.4 0.00025 8.6E-09 67.3 7.1 23 383-405 25-47 (207)
293 1x3s_A RAS-related protein RAB 97.4 0.00054 1.8E-08 63.5 9.0 147 383-573 15-166 (195)
294 1upt_A ARL1, ADP-ribosylation 97.4 0.0002 6.9E-09 64.8 6.0 115 383-546 7-122 (171)
295 3ney_A 55 kDa erythrocyte memb 97.4 8.6E-05 2.9E-09 72.1 3.6 27 380-408 18-44 (197)
296 2hjg_A GTP-binding protein ENG 97.4 0.00035 1.2E-08 75.1 8.7 118 385-545 5-124 (436)
297 3bh0_A DNAB-like replicative h 97.4 0.0014 4.8E-08 67.5 12.8 52 368-421 55-106 (315)
298 2bme_A RAB4A, RAS-related prot 97.3 0.00026 9E-09 65.2 6.5 149 383-575 10-163 (186)
299 3q72_A GTP-binding protein RAD 97.3 0.00043 1.5E-08 62.4 7.8 22 384-405 3-24 (166)
300 2f7s_A C25KG, RAS-related prot 97.3 0.00029 9.9E-09 67.1 6.9 158 384-575 26-189 (217)
301 1zd9_A ADP-ribosylation factor 97.3 0.00029 1E-08 65.7 6.7 23 383-405 22-44 (188)
302 2o52_A RAS-related protein RAB 97.3 0.00022 7.6E-09 67.4 6.0 23 383-405 25-47 (200)
303 1h65_A Chloroplast outer envel 97.3 0.0003 1E-08 70.4 7.1 125 383-545 39-167 (270)
304 3sjy_A Translation initiation 97.3 0.00047 1.6E-08 73.3 8.8 68 466-546 75-143 (403)
305 2j1l_A RHO-related GTP-binding 97.3 0.00051 1.7E-08 65.8 8.2 23 383-405 34-56 (214)
306 2z43_A DNA repair and recombin 97.3 0.00038 1.3E-08 71.9 7.7 57 377-438 103-166 (324)
307 3i8s_A Ferrous iron transport 97.3 0.00032 1.1E-08 70.8 6.9 139 384-572 4-156 (274)
308 3bwd_D RAC-like GTP-binding pr 97.3 0.00031 1.1E-08 64.4 6.3 23 383-405 8-30 (182)
309 1mh1_A RAC1; GTP-binding, GTPa 97.3 0.00029 9.8E-09 64.7 6.1 22 384-405 6-27 (186)
310 4djt_A GTP-binding nuclear pro 97.3 0.00016 5.5E-09 68.9 4.5 100 466-575 61-165 (218)
311 1v5w_A DMC1, meiotic recombina 97.3 0.00029 9.9E-09 73.5 6.8 57 377-438 118-181 (343)
312 3t61_A Gluconokinase; PSI-biol 97.3 0.00044 1.5E-08 65.7 7.5 25 383-407 18-42 (202)
313 2h17_A ADP-ribosylation factor 97.3 0.00025 8.7E-09 65.6 5.7 115 383-546 21-136 (181)
314 3def_A T7I23.11 protein; chlor 97.3 0.00036 1.2E-08 69.6 7.1 125 383-545 36-164 (262)
315 4bas_A ADP-ribosylation factor 97.3 0.0013 4.5E-08 61.1 10.4 23 383-405 17-39 (199)
316 4eaq_A DTMP kinase, thymidylat 97.3 0.00018 6E-09 70.9 4.6 44 371-417 13-59 (229)
317 2p5t_B PEZT; postsegregational 97.3 0.00049 1.7E-08 68.3 7.8 40 382-424 31-70 (253)
318 4a1f_A DNAB helicase, replicat 97.3 0.0013 4.4E-08 68.9 11.3 51 368-420 33-83 (338)
319 3gee_A MNME, tRNA modification 97.3 0.00021 7.3E-09 78.1 5.6 149 385-575 235-388 (476)
320 2xtp_A GTPase IMAP family memb 97.2 0.0006 2.1E-08 67.3 8.3 23 383-405 22-44 (260)
321 3pqc_A Probable GTP-binding pr 97.2 0.00043 1.5E-08 64.0 6.7 22 384-405 24-45 (195)
322 2il1_A RAB12; G-protein, GDP, 97.2 0.0003 1E-08 66.0 5.6 22 384-405 27-48 (192)
323 1fnn_A CDC6P, cell division co 97.2 0.0025 8.4E-08 65.8 13.2 34 385-418 46-80 (389)
324 2fh5_B SR-beta, signal recogni 97.2 0.00033 1.1E-08 66.5 6.0 24 383-406 7-30 (214)
325 1kag_A SKI, shikimate kinase I 97.2 0.00014 4.6E-09 67.1 3.1 25 385-409 6-30 (173)
326 2hjg_A GTP-binding protein ENG 97.2 0.00068 2.3E-08 72.9 9.0 147 383-575 175-339 (436)
327 1xzp_A Probable tRNA modificat 97.2 0.00035 1.2E-08 76.5 6.8 141 384-576 244-396 (482)
328 2b6h_A ADP-ribosylation factor 97.2 0.00063 2.2E-08 63.9 7.6 117 381-546 27-144 (192)
329 1mky_A Probable GTP-binding pr 97.2 0.00075 2.6E-08 72.6 9.1 117 385-545 3-123 (439)
330 2aka_B Dynamin-1; fusion prote 97.2 0.0018 6E-08 64.9 11.3 23 384-406 27-49 (299)
331 1vg8_A RAS-related protein RAB 97.2 0.00031 1E-08 66.0 5.2 24 383-406 8-31 (207)
332 1byi_A Dethiobiotin synthase; 97.2 0.0034 1.2E-07 60.1 12.7 33 385-417 3-36 (224)
333 2qu8_A Putative nucleolar GTP- 97.2 0.0015 5.2E-08 63.0 10.1 23 383-405 29-51 (228)
334 1ni3_A YCHF GTPase, YCHF GTP-b 97.2 0.00022 7.5E-09 76.2 4.4 40 377-418 16-67 (392)
335 1xjc_A MOBB protein homolog; s 97.2 0.00032 1.1E-08 66.4 4.9 38 383-420 4-41 (169)
336 1wms_A RAB-9, RAB9, RAS-relate 97.2 0.001 3.5E-08 60.5 8.2 23 383-405 7-29 (177)
337 2gco_A H9, RHO-related GTP-bin 97.1 0.00043 1.5E-08 65.4 5.6 23 383-405 25-47 (201)
338 2atx_A Small GTP binding prote 97.1 0.00084 2.9E-08 62.5 7.6 22 384-405 19-40 (194)
339 2pez_A Bifunctional 3'-phospho 97.1 0.00024 8.1E-09 66.3 3.8 37 380-418 4-41 (179)
340 2h57_A ADP-ribosylation factor 97.1 0.0003 1E-08 65.5 4.4 24 383-406 21-44 (190)
341 2qtf_A Protein HFLX, GTP-bindi 97.1 0.0009 3.1E-08 70.6 8.4 35 385-419 181-226 (364)
342 3cbq_A GTP-binding protein REM 97.1 0.0027 9.4E-08 59.8 11.0 23 383-405 23-45 (195)
343 2yc2_C IFT27, small RAB-relate 97.1 0.00036 1.2E-08 65.3 4.8 103 466-575 73-182 (208)
344 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.0007 2.4E-08 67.5 7.0 41 383-423 4-44 (260)
345 2atv_A RERG, RAS-like estrogen 97.1 0.0054 1.8E-07 57.3 12.7 23 383-405 28-50 (196)
346 3t5d_A Septin-7; GTP-binding p 97.1 0.0019 6.4E-08 64.8 10.1 25 381-405 6-30 (274)
347 2fu5_C RAS-related protein RAB 97.1 0.00071 2.4E-08 62.2 6.5 99 466-574 57-160 (183)
348 2ce7_A Cell division protein F 97.1 0.00091 3.1E-08 73.2 8.3 33 371-407 41-73 (476)
349 3j2k_7 ERF3, eukaryotic polype 97.1 0.0014 4.9E-08 70.6 9.8 23 384-406 18-40 (439)
350 1np6_A Molybdopterin-guanine d 97.1 0.00042 1.4E-08 65.7 4.9 37 384-420 7-43 (174)
351 2x2e_A Dynamin-1; nitration, h 97.1 0.00069 2.4E-08 70.7 7.0 22 385-406 33-54 (353)
352 1cke_A CK, MSSA, protein (cyti 97.1 0.00013 4.6E-09 70.2 1.3 24 384-407 6-29 (227)
353 1moz_A ARL1, ADP-ribosylation 97.1 0.00029 9.8E-09 64.8 3.5 23 382-404 17-39 (183)
354 3o47_A ADP-ribosylation factor 97.1 0.00052 1.8E-08 71.1 5.9 117 382-547 164-281 (329)
355 1lnz_A SPO0B-associated GTP-bi 97.1 0.00059 2E-08 71.5 6.3 150 385-574 160-319 (342)
356 3oes_A GTPase rhebl1; small GT 97.1 0.00075 2.6E-08 63.6 6.5 23 383-405 24-46 (201)
357 4afi_A AP-3 complex subunit de 97.0 0.0071 2.4E-07 57.4 13.1 103 4-120 57-166 (173)
358 3tr5_A RF-3, peptide chain rel 97.0 0.00068 2.3E-08 75.1 6.9 84 465-562 81-165 (528)
359 2xau_A PRE-mRNA-splicing facto 97.0 0.00018 6.1E-09 83.2 2.3 116 379-514 107-227 (773)
360 2xex_A Elongation factor G; GT 97.0 0.0024 8.1E-08 72.9 11.5 131 383-548 10-143 (693)
361 3t5g_A GTP-binding protein RHE 97.0 0.00085 2.9E-08 61.6 6.3 23 383-405 6-28 (181)
362 2qt1_A Nicotinamide riboside k 97.0 0.00035 1.2E-08 66.6 3.8 39 377-421 17-55 (207)
363 3gj0_A GTP-binding nuclear pro 97.0 0.00041 1.4E-08 66.4 4.2 99 466-575 64-165 (221)
364 1wb1_A Translation elongation 97.0 0.0013 4.4E-08 71.9 8.6 150 383-575 19-179 (482)
365 1gvn_B Zeta; postsegregational 97.0 0.0004 1.4E-08 70.7 4.2 39 382-423 32-70 (287)
366 3m6a_A ATP-dependent protease 97.0 0.00025 8.5E-09 78.7 2.8 43 373-418 101-143 (543)
367 1m7b_A RND3/RHOE small GTP-bin 97.0 0.00078 2.7E-08 62.4 5.8 24 383-406 7-30 (184)
368 1m7g_A Adenylylsulfate kinase; 97.0 0.00036 1.2E-08 67.0 3.6 42 379-423 23-66 (211)
369 2xj4_A MIPZ; replication, cell 97.0 0.0035 1.2E-07 63.2 11.0 114 384-506 5-136 (286)
370 3cpj_B GTP-binding protein YPT 97.0 0.0012 4.1E-08 63.4 7.3 23 383-405 13-35 (223)
371 4gzl_A RAS-related C3 botulinu 97.0 0.00058 2E-08 64.8 4.9 25 381-405 28-52 (204)
372 1zun_B Sulfate adenylate trans 97.0 0.0015 5.1E-08 70.2 8.6 69 465-546 103-171 (434)
373 2q3h_A RAS homolog gene family 96.9 0.0027 9.2E-08 59.4 9.3 23 383-405 20-42 (201)
374 1ksh_A ARF-like protein 2; sma 96.9 0.00038 1.3E-08 64.4 3.2 24 382-405 17-40 (186)
375 3ez2_A Plasmid partition prote 96.9 0.0044 1.5E-07 65.4 11.9 41 382-422 107-154 (398)
376 1sxj_C Activator 1 40 kDa subu 96.9 0.0002 6.8E-09 74.0 1.3 39 376-414 39-77 (340)
377 2j0v_A RAC-like GTP-binding pr 96.9 0.0019 6.5E-08 61.1 8.1 23 383-405 9-31 (212)
378 2r8r_A Sensor protein; KDPD, P 96.9 0.00097 3.3E-08 66.1 6.1 42 380-422 4-45 (228)
379 3geh_A MNME, tRNA modification 96.9 0.0014 4.8E-08 71.4 7.7 117 384-546 225-344 (462)
380 1dar_A EF-G, elongation factor 96.9 0.0036 1.2E-07 71.4 11.4 70 465-548 76-145 (691)
381 1jjv_A Dephospho-COA kinase; P 96.9 0.00046 1.6E-08 65.6 3.4 33 384-421 3-35 (206)
382 3ez9_A Para; DNA binding, wing 96.9 0.0032 1.1E-07 66.7 10.2 41 382-422 110-157 (403)
383 1w1w_A Structural maintenance 96.9 0.00049 1.7E-08 73.7 3.9 63 473-542 334-396 (430)
384 3k1j_A LON protease, ATP-depen 96.9 0.00035 1.2E-08 78.3 2.8 45 373-419 52-97 (604)
385 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00062 2.1E-08 62.6 4.0 25 383-407 23-47 (149)
386 2x77_A ADP-ribosylation factor 96.9 0.00035 1.2E-08 64.9 2.2 23 382-404 21-43 (189)
387 1gwn_A RHO-related GTP-binding 96.8 0.0011 3.9E-08 63.2 5.8 24 383-406 28-51 (205)
388 3bgw_A DNAB-like replicative h 96.8 0.01 3.5E-07 64.1 14.0 159 370-543 186-360 (444)
389 2q6t_A DNAB replication FORK h 96.8 0.0038 1.3E-07 67.2 10.3 160 369-542 188-362 (444)
390 2j69_A Bacterial dynamin-like 96.8 0.0027 9.2E-08 72.5 9.1 68 466-546 174-244 (695)
391 1gtv_A TMK, thymidylate kinase 96.8 0.0005 1.7E-08 65.4 2.6 33 385-417 2-34 (214)
392 2c78_A Elongation factor TU-A; 96.7 0.0034 1.2E-07 66.6 9.1 127 384-545 12-141 (405)
393 2qpt_A EH domain-containing pr 96.7 0.0027 9.2E-08 70.6 8.4 24 383-406 65-88 (550)
394 3q3j_B RHO-related GTP-binding 96.7 0.0033 1.1E-07 60.2 7.7 22 384-405 28-49 (214)
395 2iwr_A Centaurin gamma 1; ANK 96.7 0.0041 1.4E-07 56.7 8.0 23 383-405 7-29 (178)
396 3llm_A ATP-dependent RNA helic 96.7 0.012 4E-07 57.4 11.7 27 377-405 72-98 (235)
397 2if2_A Dephospho-COA kinase; a 96.7 0.00089 3.1E-08 63.4 3.5 22 384-405 2-23 (204)
398 1ukz_A Uridylate kinase; trans 96.7 0.0021 7.2E-08 60.8 6.1 28 380-407 12-39 (203)
399 3ug7_A Arsenical pump-driving 96.7 0.044 1.5E-06 57.1 16.7 38 384-421 27-64 (349)
400 1w1w_A Structural maintenance 96.6 0.0018 6.1E-08 69.3 6.1 11 464-474 354-364 (430)
401 3llu_A RAS-related GTP-binding 96.6 0.0071 2.4E-07 56.6 9.5 71 466-545 69-142 (196)
402 2rdo_7 EF-G, elongation factor 96.6 0.0094 3.2E-07 68.1 12.2 72 465-550 81-152 (704)
403 2qor_A Guanylate kinase; phosp 96.6 0.00092 3.2E-08 63.8 3.2 28 379-408 10-37 (204)
404 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0014 4.9E-08 72.0 5.0 47 369-421 54-100 (499)
405 3zq6_A Putative arsenical pump 96.6 0.014 4.9E-07 60.1 12.3 38 384-421 15-52 (324)
406 3iqw_A Tail-anchored protein t 96.6 0.012 4.1E-07 61.3 11.7 39 383-421 16-54 (334)
407 2w58_A DNAI, primosome compone 96.6 0.0015 5.2E-08 61.7 4.6 35 384-418 55-89 (202)
408 3zvr_A Dynamin-1; hydrolase, D 96.6 0.0041 1.4E-07 71.6 8.9 76 467-551 151-235 (772)
409 1y63_A LMAJ004144AAA protein; 96.6 0.0012 4.2E-08 62.0 3.8 32 373-406 2-33 (184)
410 1q57_A DNA primase/helicase; d 96.6 0.0087 3E-07 65.3 11.0 157 371-543 232-404 (503)
411 3dpu_A RAB family protein; roc 96.6 0.0065 2.2E-07 66.9 10.0 97 465-575 97-198 (535)
412 2z4s_A Chromosomal replication 96.6 0.0042 1.4E-07 66.9 8.3 32 385-416 132-165 (440)
413 3qks_A DNA double-strand break 96.5 0.0014 4.8E-08 63.1 4.0 26 383-408 23-48 (203)
414 3umf_A Adenylate kinase; rossm 96.5 0.0025 8.5E-08 62.5 5.7 39 382-424 28-66 (217)
415 2v1u_A Cell division control p 96.5 0.031 1.1E-06 57.2 14.3 27 383-409 44-70 (387)
416 1u94_A RECA protein, recombina 96.5 0.011 3.8E-07 62.1 11.1 40 378-419 60-99 (356)
417 1xp8_A RECA protein, recombina 96.5 0.014 4.8E-07 61.6 11.7 41 378-420 71-111 (366)
418 3auy_A DNA double-strand break 96.5 0.0023 7.9E-08 67.2 5.7 58 473-542 281-345 (371)
419 1ly1_A Polynucleotide kinase; 96.5 0.0015 5.2E-08 59.9 3.6 37 383-423 2-38 (181)
420 3io3_A DEHA2D07832P; chaperone 96.5 0.014 4.8E-07 61.1 11.4 38 384-421 19-58 (348)
421 1ihu_A Arsenical pump-driving 96.5 0.018 6.1E-07 64.0 12.9 38 384-421 9-46 (589)
422 3pg5_A Uncharacterized protein 96.5 0.0086 2.9E-07 62.7 9.7 38 385-422 3-41 (361)
423 2i1q_A DNA repair and recombin 96.5 0.0038 1.3E-07 63.9 6.9 81 323-406 37-121 (322)
424 2qag_A Septin-2, protein NEDD5 96.4 0.0036 1.2E-07 65.7 6.8 24 384-407 38-61 (361)
425 3fkq_A NTRC-like two-domain pr 96.4 0.014 5E-07 61.1 11.2 40 381-420 141-181 (373)
426 1zd8_A GTP:AMP phosphotransfer 96.4 0.0059 2E-07 59.0 7.6 25 383-407 7-31 (227)
427 4dkx_A RAS-related protein RAB 96.4 0.013 4.5E-07 56.9 10.0 99 466-574 62-165 (216)
428 1d2e_A Elongation factor TU (E 96.4 0.0034 1.2E-07 66.6 6.2 127 384-546 4-133 (397)
429 2zts_A Putative uncharacterize 96.4 0.013 4.6E-07 56.3 10.0 42 378-421 27-69 (251)
430 3kb2_A SPBC2 prophage-derived 96.4 0.002 6.7E-08 58.8 3.7 23 385-407 3-25 (173)
431 2b8t_A Thymidine kinase; deoxy 96.4 0.0082 2.8E-07 59.1 8.3 88 380-476 11-100 (223)
432 4fcw_A Chaperone protein CLPB; 96.4 0.0026 9E-08 63.9 4.9 39 384-422 48-86 (311)
433 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0017 5.7E-08 68.5 3.5 39 370-408 11-49 (359)
434 3l0i_B RAS-related protein RAB 96.4 0.00028 9.6E-09 66.5 -2.2 92 466-567 82-176 (199)
435 3lvq_E ARF-GAP with SH3 domain 96.4 0.0037 1.3E-07 67.8 6.4 113 384-545 323-436 (497)
436 2elf_A Protein translation elo 96.3 0.0073 2.5E-07 63.7 8.4 102 385-544 23-125 (370)
437 3cmu_A Protein RECA, recombina 96.3 0.0084 2.9E-07 75.3 10.1 41 378-420 1424-1464(2050)
438 1nks_A Adenylate kinase; therm 96.3 0.0031 1.1E-07 58.4 4.8 33 385-417 3-35 (194)
439 3r7w_A Gtpase1, GTP-binding pr 96.3 0.0095 3.3E-07 60.8 8.8 122 384-546 4-129 (307)
440 3bos_A Putative DNA replicatio 96.3 0.0037 1.3E-07 59.7 5.3 37 385-421 54-90 (242)
441 1uf9_A TT1252 protein; P-loop, 96.3 0.0018 6E-08 60.9 2.8 26 381-406 6-31 (203)
442 2rhm_A Putative kinase; P-loop 96.3 0.0027 9.3E-08 59.1 4.0 25 383-407 5-29 (193)
443 3th5_A RAS-related C3 botulinu 95.2 0.00073 2.5E-08 63.7 0.0 24 382-405 29-52 (204)
444 3cm0_A Adenylate kinase; ATP-b 96.2 0.0026 8.9E-08 59.0 3.7 23 385-407 6-28 (186)
445 1xx6_A Thymidine kinase; NESG, 96.2 0.013 4.4E-07 56.3 8.5 85 380-477 7-93 (191)
446 1kht_A Adenylate kinase; phosp 96.2 0.003 1E-07 58.5 3.7 27 385-411 5-31 (192)
447 3of5_A Dethiobiotin synthetase 96.2 0.013 4.6E-07 57.5 8.6 165 384-564 5-202 (228)
448 1tev_A UMP-CMP kinase; ploop, 96.1 0.0033 1.1E-07 58.3 4.0 25 383-407 3-27 (196)
449 1qhx_A CPT, protein (chloramph 96.1 0.0029 9.9E-08 58.3 3.4 25 384-408 4-28 (178)
450 2plr_A DTMP kinase, probable t 96.1 0.0049 1.7E-07 58.1 4.9 31 384-415 5-35 (213)
451 2jaq_A Deoxyguanosine kinase; 96.1 0.0033 1.1E-07 58.8 3.7 24 385-408 2-25 (205)
452 2z0h_A DTMP kinase, thymidylat 96.1 0.0049 1.7E-07 57.5 4.8 32 385-416 2-33 (197)
453 3h4m_A Proteasome-activating n 96.0 0.045 1.5E-06 54.2 12.1 23 385-407 53-75 (285)
454 1uj2_A Uridine-cytidine kinase 96.0 0.0049 1.7E-07 60.8 4.5 44 380-423 19-68 (252)
455 1nn5_A Similar to deoxythymidy 96.0 0.0058 2E-07 57.8 4.9 31 384-414 10-40 (215)
456 1vht_A Dephospho-COA kinase; s 95.9 0.0041 1.4E-07 59.6 3.7 23 383-405 4-26 (218)
457 3lw7_A Adenylate kinase relate 95.9 0.0036 1.2E-07 56.6 3.1 19 385-403 3-21 (179)
458 1jbk_A CLPB protein; beta barr 95.9 0.0053 1.8E-07 55.8 4.3 27 383-409 43-69 (195)
459 2c95_A Adenylate kinase 1; tra 95.9 0.0046 1.6E-07 57.7 3.8 24 384-407 10-33 (196)
460 1qf9_A UMP/CMP kinase, protein 95.9 0.005 1.7E-07 57.0 4.0 25 383-407 6-30 (194)
461 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0051 1.8E-07 64.7 4.6 33 385-417 37-69 (392)
462 2bwj_A Adenylate kinase 5; pho 95.9 0.0048 1.6E-07 57.7 3.8 24 384-407 13-36 (199)
463 3qq5_A Small GTP-binding prote 95.9 0.0034 1.2E-07 67.6 3.2 94 467-575 84-186 (423)
464 2dby_A GTP-binding protein; GD 95.9 0.028 9.7E-07 59.3 10.2 23 385-407 3-25 (368)
465 2ze6_A Isopentenyl transferase 95.8 0.0048 1.6E-07 61.3 3.8 23 385-407 3-25 (253)
466 4ad8_A DNA repair protein RECN 95.8 0.0022 7.5E-08 70.5 1.4 35 369-406 49-83 (517)
467 3cb4_D GTP-binding protein LEP 95.8 0.034 1.2E-06 62.4 11.0 94 466-573 71-170 (599)
468 2wwf_A Thymidilate kinase, put 95.8 0.0074 2.5E-07 57.1 4.9 31 384-414 11-41 (212)
469 3trf_A Shikimate kinase, SK; a 95.8 0.0052 1.8E-07 57.0 3.7 23 385-407 7-29 (185)
470 1q3t_A Cytidylate kinase; nucl 95.8 0.0057 2E-07 59.7 4.1 25 383-407 16-40 (236)
471 1via_A Shikimate kinase; struc 95.8 0.0043 1.5E-07 57.4 3.1 23 385-407 6-28 (175)
472 3vqt_A RF-3, peptide chain rel 95.8 0.024 8.3E-07 62.9 9.6 141 385-563 33-184 (548)
473 3ice_A Transcription terminati 95.8 0.0077 2.6E-07 64.3 5.3 46 373-420 166-213 (422)
474 2zej_A Dardarin, leucine-rich 95.8 0.0035 1.2E-07 58.2 2.3 24 384-407 3-26 (184)
475 2qby_A CDC6 homolog 1, cell di 95.8 0.0064 2.2E-07 62.3 4.5 28 383-410 45-72 (386)
476 2pbr_A DTMP kinase, thymidylat 95.8 0.0072 2.5E-07 56.0 4.5 31 385-415 2-32 (195)
477 3r20_A Cytidylate kinase; stru 95.7 0.0054 1.9E-07 60.8 3.7 25 383-407 9-33 (233)
478 1g7s_A Translation initiation 95.7 0.012 4E-07 66.1 6.8 65 467-545 71-135 (594)
479 1a7j_A Phosphoribulokinase; tr 95.7 0.0031 1.1E-07 64.3 1.9 40 383-422 5-44 (290)
480 1jny_A EF-1-alpha, elongation 95.7 0.012 4.2E-07 63.1 6.6 23 384-406 7-29 (435)
481 2cdn_A Adenylate kinase; phosp 95.7 0.007 2.4E-07 57.2 4.2 28 380-407 17-44 (201)
482 3mca_A HBS1, elongation factor 95.7 0.0022 7.6E-08 71.9 0.6 25 383-407 177-201 (592)
483 3cmw_A Protein RECA, recombina 95.7 0.03 1E-06 69.6 10.5 41 378-420 729-769 (1706)
484 3iij_A Coilin-interacting nucl 95.6 0.0065 2.2E-07 56.3 3.7 23 385-407 13-35 (180)
485 1l8q_A Chromosomal replication 95.6 0.0059 2E-07 62.3 3.6 36 385-420 39-74 (324)
486 2ywe_A GTP-binding protein LEP 95.6 0.026 8.9E-07 63.3 9.1 69 466-548 73-141 (600)
487 3syl_A Protein CBBX; photosynt 95.6 0.055 1.9E-06 54.1 10.7 26 385-410 69-94 (309)
488 3izy_P Translation initiation 95.6 0.0046 1.6E-07 68.6 2.8 115 383-546 4-118 (537)
489 1lv7_A FTSH; alpha/beta domain 95.6 0.0068 2.3E-07 59.6 3.7 35 385-421 47-81 (257)
490 2axn_A 6-phosphofructo-2-kinas 95.6 0.016 5.3E-07 64.0 6.9 43 381-423 33-75 (520)
491 2v54_A DTMP kinase, thymidylat 95.5 0.0071 2.4E-07 56.8 3.6 23 385-407 6-28 (204)
492 1zak_A Adenylate kinase; ATP:A 95.5 0.0066 2.3E-07 58.4 3.3 26 383-408 5-30 (222)
493 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.046 1.6E-06 56.9 9.7 27 378-406 120-146 (331)
494 4edh_A DTMP kinase, thymidylat 95.5 0.011 3.7E-07 57.6 4.7 36 380-417 5-40 (213)
495 2vli_A Antibiotic resistance p 95.5 0.0049 1.7E-07 56.9 2.1 25 383-407 5-29 (183)
496 1ex7_A Guanylate kinase; subst 95.5 0.0066 2.3E-07 58.1 3.0 23 385-407 3-25 (186)
497 1f60_A Elongation factor EEF1A 95.5 0.015 5.1E-07 62.9 6.2 23 384-406 8-30 (458)
498 4tmk_A Protein (thymidylate ki 95.4 0.014 4.6E-07 57.0 5.2 34 381-416 3-37 (213)
499 1aky_A Adenylate kinase; ATP:A 95.4 0.009 3.1E-07 57.4 3.9 25 383-407 4-28 (220)
500 2ohf_A Protein OLA1, GTP-bindi 95.4 0.0063 2.1E-07 65.0 3.0 25 380-406 21-45 (396)
No 1
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=100.00 E-value=1.8e-43 Score=338.89 Aligned_cols=142 Identities=32% Similarity=0.527 Sum_probs=103.7
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHhhhhccccCCCceeecCCCCceeeEEEEecccceEEEEEeccccc
Q 007789 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (589)
Q Consensus 1 Mld~~~i~t~gG~vLW~~~~~~~~~~~~~in~li~~v~leer~~~~~~~~~~~~~~~~lkw~~~ne~~lvfv~vyq~~l~ 80 (589)
|.|+|+|||||||||||++ ++++++++|||+||++||||||+++++|.+| +|+|||+|+||||||||||||+|||
T Consensus 10 ~~D~~~IfTkGGvVLWs~~-~~~~~~~~~IN~LIr~VlLEER~~~~~y~~d----~ytlkW~l~NEl~LVFVvVYQ~iL~ 84 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQ-GVSDSCTGPVNALIRSVLLQERGGNNSFTHE----ALTLKYKLDNQFELVFVVGFQKILT 84 (185)
T ss_dssp SCSEEEEEETTSBEEEEEB-TTTBSCCCHHHHHHHHTGGGC-------CCC----CCEEEEEEETTTTEEEEEEESCGGG
T ss_pred ceeEEEEEeCCeEEEEeec-CCcccccchHHHHHHHhhhccccCCCceeEc----CeEEEEEEeccCCEEEEEEEccccc
Confidence 8999999999999999953 4456899999999999999999999999999 9999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcCC---------CccchHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCC-cCC
Q 007789 81 LLYVDDLLAMMKQSFSEIYDPKRT---------DYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQL-QKG 150 (589)
Q Consensus 81 l~yvd~ll~~v~~~F~~~y~~~~~---------~~~~f~~~f~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 150 (589)
|+|||+||++|++.|+++|++.+. .+.+||++|+++|+++|..++.++ ++.|+ +|++++++++ ..+
T Consensus 85 L~YiD~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~-~k~mr---~fees~ks~k~~~~ 160 (185)
T 2fh5_A 85 LTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRA-PTTMK---KFEDSEKAKKPVRS 160 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC--------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhh-HHhhc---cHhhhhhhhhhhhh
Confidence 999999999999999999977632 233799999999999999876544 55554 6899988876 443
Q ss_pred C
Q 007789 151 G 151 (589)
Q Consensus 151 ~ 151 (589)
+
T Consensus 161 ~ 161 (185)
T 2fh5_A 161 M 161 (185)
T ss_dssp -
T ss_pred h
Confidence 3
No 2
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=2e-38 Score=332.49 Aligned_cols=251 Identities=45% Similarity=0.756 Sum_probs=215.6
Q ss_pred cCCCcCChhhHHHHHHHHHHHHHHhhHH--------------------------------HHHHHHHHhcCccccccccc
Q 007789 325 AGKANLDKADLEPALKALKDRLMTKNVA--------------------------------AMEEALVRILTPRRSIDILR 372 (589)
Q Consensus 325 ~~~~~l~~~~l~~~l~~l~~~Ll~~~V~--------------------------------al~~~l~~il~p~~~i~iL~ 372 (589)
.+...|+++++++++++|+.+|+++||+ ++.+.|.+++.+...++++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 121 (328)
T 3e70_C 42 ILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIE 121 (328)
T ss_dssp CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHHSCCSSCCCHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 4577899999999999999999999997 13333344444332222110
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHH
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI 452 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ 452 (589)
+.....+|.+++|+||||||||||+++|+++++|++|+|.+.++|+||.++.+|++.++++++++++...++.++..
T Consensus 122 ---~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~ 198 (328)
T 3e70_C 122 ---EIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA 198 (328)
T ss_dssp ---HHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH
T ss_pred ---hcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHH
Confidence 00112334599999999999999999999999999999999999999999999999999999999888888888988
Q ss_pred HHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007789 453 VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 532 (589)
Q Consensus 453 ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~ 532 (589)
.+.+.+..+...+++.+++||+|+.+++..++.+|..+.+...|+..++|.++++|+|..++.+.|++.+
T Consensus 199 ~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~---------- 268 (328)
T 3e70_C 199 VAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAV---------- 268 (328)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHS----------
T ss_pred HHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhc----------
Confidence 8888888776678899999999999999999999999888889999988888999999999888876554
Q ss_pred CccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 533 LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 533 ~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|++ .++|.++++.+.++.||.|+|+||.++||++|+|++|+++||+
T Consensus 269 ~it~iilTKlD~~-a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~llg 324 (328)
T 3e70_C 269 KIDGIILTKLDAD-ARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFG 324 (328)
T ss_dssp CCCEEEEECGGGC-SCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred CCCEEEEeCcCCc-cchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHHhC
Confidence 8999999999996 8999999999999999999999999999999999999999984
No 3
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-37 Score=337.84 Aligned_cols=265 Identities=28% Similarity=0.490 Sum_probs=225.5
Q ss_pred cchHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHH-h--------cCcccc-c--------cc
Q 007789 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVR-I--------LTPRRS-I--------DI 370 (589)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~-i--------l~p~~~-i--------~i 370 (589)
+..+++.|+++.|...||++++++++++++.+|+++||+ .+.+.+.+ . ++|... + .+
T Consensus 7 ~~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~ 86 (443)
T 3dm5_A 7 GKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKF 86 (443)
T ss_dssp HHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHH
Confidence 344778999999999999999999999999999999988 11111111 1 111111 0 11
Q ss_pred ccccc-cccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCC
Q 007789 371 LRDVH-AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 449 (589)
Q Consensus 371 L~~Is-~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d 449 (589)
|..-. .....+.|.+|+|+|++||||||++.+||.++...+.+|++.++|+||+++++|++.|++..+++++......+
T Consensus 87 L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~d 166 (443)
T 3dm5_A 87 LGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKD 166 (443)
T ss_dssp TTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCC
T ss_pred hcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCC
Confidence 11100 00112458899999999999999999999999998999999999999999999999999999999998777889
Q ss_pred HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
+..++.++++.+...++|+++|||+|+.+.+..++.+|.++.....|+.++||.+++.|+++.++++.|++.+
T Consensus 167 p~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~------- 239 (443)
T 3dm5_A 167 AIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEAT------- 239 (443)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSC-------
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhC-------
Confidence 9999999999988888999999999999999999999999998999999999999999999998887776543
Q ss_pred CCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 530 NPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 530 ~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|++ .++|+++++.+.++.||.|+|+||+++||++|+|++|+++||+
T Consensus 240 ---~i~gVIlTKlD~~-~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg 295 (443)
T 3dm5_A 240 ---PIGSIIVTKLDGS-AKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG 295 (443)
T ss_dssp ---TTEEEEEECCSSC-SSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT
T ss_pred ---CCeEEEEECCCCc-ccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC
Confidence 8999999999997 8999999999999999999999999999999999999999984
No 4
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=5.3e-37 Score=332.10 Aligned_cols=263 Identities=26% Similarity=0.459 Sum_probs=224.5
Q ss_pred hHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHHh---------cCcccc-c--------cccc
Q 007789 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVRI---------LTPRRS-I--------DILR 372 (589)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~i---------l~p~~~-i--------~iL~ 372 (589)
.|++.|+++.|...||++++++++++++.+|+++||+ .+.+.+.+. ++|... + .+|.
T Consensus 5 ~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~ 84 (433)
T 3kl4_A 5 NIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFG 84 (433)
T ss_dssp THHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcC
Confidence 3778999999999999999999999999999999997 111111111 111111 0 1111
Q ss_pred cc--ccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCH
Q 007789 373 DV--HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDP 450 (589)
Q Consensus 373 ~I--s~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~ 450 (589)
.- ......+.|.+|+|+|+|||||||++++||+++.+.+++|++.++|+||+++++|+..+++.++++++......++
T Consensus 85 ~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp 164 (433)
T 3kl4_A 85 GDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNP 164 (433)
T ss_dssp SSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCH
T ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCH
Confidence 10 0111123577999999999999999999999999999999999999999999999999999999999887777889
Q ss_pred HHHHHHHHHHhcccCCCccccccCcccc--ccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 451 AIVAKEAIQEATRNGSDVVLVDTAGRMQ--DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 451 ~~ia~~al~~a~l~~~d~vliDTSGg~q--qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
..++..++..+...++|++++||+|+.+ .+..++.+|..+....+|+.++||.+++.|.++.++++.|++.+
T Consensus 165 ~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~------ 238 (433)
T 3kl4_A 165 IEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS------ 238 (433)
T ss_dssp HHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc------
Confidence 9999999999887889999999999999 99999999999999899999999999999999999988887655
Q ss_pred CCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 529 PNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 529 ~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|+. +++|+++++.+.++.||.|+|+||+++||+.|+|++++++||+
T Consensus 239 ----~~~gVIlTKlD~~-a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg 294 (433)
T 3kl4_A 239 ----PIGSVIITKMDGT-AKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILG 294 (433)
T ss_dssp ----SSEEEEEECGGGC-SCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHC
T ss_pred ----CCcEEEEeccccc-ccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcC
Confidence 8899999999996 8999999999999999999999999999999999999999874
No 5
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=3.7e-37 Score=336.77 Aligned_cols=242 Identities=33% Similarity=0.516 Sum_probs=207.0
Q ss_pred CCCcCChhhHHHHHHHHHHHHHHhhHH----------------------------HHHHHHHHhcCcccccccccccccc
Q 007789 326 GKANLDKADLEPALKALKDRLMTKNVA----------------------------AMEEALVRILTPRRSIDILRDVHAA 377 (589)
Q Consensus 326 ~~~~l~~~~l~~~l~~l~~~Ll~~~V~----------------------------al~~~l~~il~p~~~i~iL~~Is~~ 377 (589)
+++.|++ +++++|+.+|+++||+ .|.+.|.+++.+ ..++++|.
T Consensus 219 ~~~~ide----~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~Isl~ 289 (503)
T 2yhs_A 219 RGKKIDD----DLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAK-----VDEPLNVE 289 (503)
T ss_dssp TTCBCSH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCBGGGHHHHHHHHHHHHHHT-----TBCCCCCC
T ss_pred ccCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCC-----CCCCceee
Confidence 3456775 4678999999999988 122222222221 12477888
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHH
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 457 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~a 457 (589)
+..|+ +++|||+||||||||+++|+|++.+++|+|.|.++|+||.++++|++.+..+.+++++......++...+.+.
T Consensus 290 i~~Ge--VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~ 367 (503)
T 2yhs_A 290 GKAPF--VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA 367 (503)
T ss_dssp SCTTE--EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHH
T ss_pred ccCCe--EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHH
Confidence 88887 9999999999999999999999999999999999999999999999998777788877666666788788888
Q ss_pred HHHhcccCCCccccccCccccccHHHHHHHHhhhhhc------CCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007789 458 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLN------NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 531 (589)
Q Consensus 458 l~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~------~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~ 531 (589)
+.++...++|++++||+|+.+.+..+|..|.+++.+. .|+.+|||.+|++|++++.+++.|++.+
T Consensus 368 l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~--------- 438 (503)
T 2yhs_A 368 IQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--------- 438 (503)
T ss_dssp HHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHT---------
T ss_pred HHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhc---------
Confidence 8887778899999999999999999999988876643 4888888899999999999988887665
Q ss_pred CCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 532 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 532 ~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|++ .++|.++++.+.+++||+|+|+||++.||+.|++++|+++||+
T Consensus 439 -~itgvIlTKLD~t-akgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg 494 (503)
T 2yhs_A 439 -GLTGITLTKLDGT-AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFA 494 (503)
T ss_dssp -CCSEEEEECGGGC-SCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred -CCCEEEEEcCCCc-ccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhc
Confidence 8999999999997 8999999999999999999999999999999999999999984
No 6
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=8.6e-37 Score=316.62 Aligned_cols=249 Identities=29% Similarity=0.453 Sum_probs=199.8
Q ss_pred HHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH----------------------------HHHHHHHHhcCcccccccc
Q 007789 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVA----------------------------AMEEALVRILTPRRSIDIL 371 (589)
Q Consensus 320 ~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~----------------------------al~~~l~~il~p~~~i~iL 371 (589)
+.+.+.|.+.++ +++.+++++++|+++||+ .+.+.|.+++.+.. .+
T Consensus 17 ~~~~~~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~ 90 (302)
T 3b9q_A 17 IDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKN---SK 90 (302)
T ss_dssp HHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcc---cc
Confidence 333344566676 678899999999999988 22333334443322 12
Q ss_pred cccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCC-CCH
Q 007789 372 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE-KDP 450 (589)
Q Consensus 372 ~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~-~d~ 450 (589)
..+++.+.+|+ +++|+||||||||||+++|||+++|++|+|.+.++|+||+++++|++.++++.+++++..... .++
T Consensus 91 ~~l~~~~~~g~--vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKPA--VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSCE--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCCc--EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 45777777887 999999999999999999999999999999999999999999999999988778887766555 677
Q ss_pred HHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhh------cCCC--EEEEEecCCCCCCHHHHHHHHHHHH
Q 007789 451 AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPD--LVLFVGEALVGNDAVDQLSKFNQKL 522 (589)
Q Consensus 451 ~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~------~~Pd--lILLVDEPt~GlD~~~q~~~f~~~l 522 (589)
...+.+.+.++...+++..++||+|+.+....++.+|.+.... .+|+ ++++ | ||+|+|+..+.+.|++..
T Consensus 169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvL-D-ptsglD~~~~~~~~~~~~ 246 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVL-D-GNTGLNMLPQAREFNEVV 246 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEE-E-GGGGGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEE-e-CCCCcCHHHHHHHHHHhc
Confidence 7777777776555567888999999998777777777643221 4688 5555 8 999999998876664433
Q ss_pred HHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 523 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 523 ~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|++ .++|.++++++.++.||.|+|+||.++||++|+|++|+++||+
T Consensus 247 ----------g~t~iiiThlD~~-~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 247 ----------GITGLILTKLDGS-ARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp ----------CCCEEEEECCSSC-SCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred ----------CCCEEEEeCCCCC-CccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 8999999999997 8999999999999999999999999999999999999999984
No 7
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-36 Score=322.51 Aligned_cols=238 Identities=31% Similarity=0.499 Sum_probs=196.7
Q ss_pred hHHHHHHHHHHHHHHhhHH----------------------------HHHHHHHHhcCcccccccccccccccccCCceE
Q 007789 334 DLEPALKALKDRLMTKNVA----------------------------AMEEALVRILTPRRSIDILRDVHAAKEQRKPYV 385 (589)
Q Consensus 334 ~l~~~l~~l~~~Ll~~~V~----------------------------al~~~l~~il~p~~~i~iL~~Is~~i~~Gep~i 385 (589)
++++.+++++++|+++||+ ++.+.|.+++.+... ...+++.+.+|+ +
T Consensus 85 ~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~---~~~l~l~~~~g~--v 159 (359)
T 2og2_A 85 ETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS---KTELQLGFRKPA--V 159 (359)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCCC------CSCCCCSSSSE--E
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCccc---CCCcceecCCCe--E
Confidence 4789999999999999998 233334444443321 135677777777 9
Q ss_pred EEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCC-CCHHHHHHHHHHHhccc
Q 007789 386 VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE-KDPAIVAKEAIQEATRN 464 (589)
Q Consensus 386 I~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~-~d~~~ia~~al~~a~l~ 464 (589)
++||||||||||||+++|||++++++|+|.+.++|+||+++++|++.++++.+++++..... .++...+.+.+.++...
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~ 239 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEE 239 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988888888776666 67887788888766555
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhh------cCCC--EEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccE
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG 536 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~------~~Pd--lILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~ 536 (589)
+++.+++||+|+.+....++.+|.+.... .+|+ +++| | ||+|+|+..+.+.|++.+ ++++
T Consensus 240 ~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvL-D-pttglD~~~~~~~~~~~~----------g~t~ 307 (359)
T 2og2_A 240 GYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVL-D-GNTGLNMLPQAREFNEVV----------GITG 307 (359)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEE-E-GGGGGGGHHHHHHHHHHT----------CCCE
T ss_pred CCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEE-c-CCCCCCHHHHHHHHHHhc----------CCeE
Confidence 67888999999988777777666643221 4788 5555 8 999999999887765443 8999
Q ss_pred EEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 537 ILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 537 IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+|+||+|++ .++|+++++.+.++.||.|+|+||.++||++|+|++|+++||.
T Consensus 308 iiiThlD~~-~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 308 LILTKLDGS-ARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp EEEESCTTC-SCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred EEEecCccc-ccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 999999997 8999999999999999999999999999999999999999984
No 8
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=6.7e-36 Score=310.23 Aligned_cols=261 Identities=31% Similarity=0.497 Sum_probs=197.3
Q ss_pred HHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH---------------------HHHHHHHHhcCcccccccccccc
Q 007789 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA---------------------AMEEALVRILTPRRSIDILRDVH 375 (589)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~---------------------al~~~l~~il~p~~~i~iL~~Is 375 (589)
+++.++++.++..+++ ++++.+++++++|+++||+ ++.+.|.+++.+....+.+..+.
T Consensus 11 l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 89 (304)
T 1rj9_A 11 LAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGRKDLKEAVKEKLVGMLEPDERRATLRKLG 89 (304)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCSSTTHHHHHHHTTTTCTTCHHHHHHHTT
T ss_pred HHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccc
Confidence 4455666666666888 8899999999999999998 12223333333322100000111
Q ss_pred ccc-----ccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCH
Q 007789 376 AAK-----EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDP 450 (589)
Q Consensus 376 ~~i-----~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~ 450 (589)
+.- ..+++.+++|+||||||||||+++|++++.|++|+|.+.++|+||.++++|+..+.++.+++++...++.++
T Consensus 90 ~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p 169 (304)
T 1rj9_A 90 FNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDS 169 (304)
T ss_dssp CCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCH
T ss_pred cccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCH
Confidence 110 112344999999999999999999999999999999999999999999999999988888888777777788
Q ss_pred HHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhh------cCCCEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 007789 451 AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 524 (589)
Q Consensus 451 ~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~------~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~ 524 (589)
...+.+.+..+...+++.+++||+|+.+.+..++.+|.+.... .+|++++|+.+|+++.+..++...|++..
T Consensus 170 ~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~-- 247 (304)
T 1rj9_A 170 AALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-- 247 (304)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHc--
Confidence 8777777776655678888999999998888777777654322 47997777888999999998888776655
Q ss_pred hhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 525 LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 525 l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||.|++ .++|.++++.+.++.||.|+|+||+++||++|+|++|+++||+
T Consensus 248 --------~~t~iivTh~d~~-a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 248 --------GLTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp --------CCSEEEEECTTSS-CCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred --------CCcEEEEECCccc-ccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 8899999999997 8999999999999999999999999999999999999999984
No 9
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=6.3e-35 Score=315.33 Aligned_cols=259 Identities=31% Similarity=0.474 Sum_probs=220.3
Q ss_pred hHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHH---------hcCccccc---------ccc-
Q 007789 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVR---------ILTPRRSI---------DIL- 371 (589)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~---------il~p~~~i---------~iL- 371 (589)
.|++.|+++.|.+.|+++++++++++++.+|+++||+ .+.+.+.+ .++|...+ ..+
T Consensus 8 ~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~ 87 (425)
T 2ffh_A 8 RLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEALG 87 (425)
T ss_dssp HHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999998 11111111 01221110 011
Q ss_pred ---cccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 372 ---RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 372 ---~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
.++++. .|.+++|+|+|||||||++.+||+++.+.+++|++.++|++|+++++|+..+++..+++++..+...
T Consensus 88 ~~~~~i~l~----~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~ 163 (425)
T 2ffh_A 88 GEARLPVLK----DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGE 163 (425)
T ss_dssp SSCCCCCCC----SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTC
T ss_pred CCcccccCC----CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCC
Confidence 244554 3459999999999999999999999999999999999999999999999999999999998876667
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
++..++.++++.+...++|+++|||+|+.+.+..++.+|..+.....|+.++||.++++|+|++.+++.|+..+
T Consensus 164 ~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l------ 237 (425)
T 2ffh_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV------ 237 (425)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHT------
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcC------
Confidence 88888888888876678999999999999999899999988888889999999988999999998887776543
Q ss_pred CCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 529 PNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 529 ~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++++|+||+|+. .++|.++++.+.++.||.|+|+||.++||++|+|++++++|++
T Consensus 238 ----~i~GVIlTKlD~~-~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg 293 (425)
T 2ffh_A 238 ----GVTGLVLTKLDGD-ARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG 293 (425)
T ss_dssp ----CCCEEEEESGGGC-SSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHT
T ss_pred ----CceEEEEeCcCCc-ccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhc
Confidence 7899999999996 8999999999999999999999999999999999999999874
No 10
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=7.5e-35 Score=302.67 Aligned_cols=252 Identities=33% Similarity=0.527 Sum_probs=203.9
Q ss_pred HHHHHHhc-CCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHHhcCccccc--------cccc---cccccccc
Q 007789 318 SSMFQSIA-GKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVRILTPRRSI--------DILR---DVHAAKEQ 380 (589)
Q Consensus 318 ~~~~~~~~-~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~il~p~~~i--------~iL~---~Is~~i~~ 380 (589)
++.++++. |. .+++ +.+++++++|+++||+ .+-+.+.+ .+|. -. ++|. .+++....
T Consensus 31 ~~~~~~~~~~~-~~~~----~~~~~l~~~L~~~dv~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~ 103 (306)
T 1vma_A 31 FGRVVKLLKGK-KLDD----ETREELEELLIQADVGVETTEYILERLEE-KDGD-ALESLKEIILEILNFDTKLNVPPEP 103 (306)
T ss_dssp HHHHHHHHTTC-CCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHTT-CCSC-HHHHHHHHHHHHTCSCCCCCCCSSS
T ss_pred HHHHHHHhcCC-CCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHh-cCHH-HHHHHHHHHHHHhCCCCCCcccCCC
Confidence 34445554 45 8887 4688999999999988 11122221 1221 10 1111 12333333
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHH
Q 007789 381 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 460 (589)
Q Consensus 381 Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~ 460 (589)
|.+|+|+|||||||||++++||+++.+++++|.+.++|+||.++++|+..+.+.++++++....+.++..++.+++..
T Consensus 104 --~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 104 --PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred --CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999999999987766677888887778877
Q ss_pred hcccCCCccccccCccccccHHHHHHHHhhhhhc------CCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007789 461 ATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLN------NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 534 (589)
Q Consensus 461 a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~------~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~i 534 (589)
+...+++++++||+|+.+.+..+|.+|.++.++. .|+.++||.+++++.+.+.+.+.|++.+ ++
T Consensus 182 a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~~~~~----------~i 251 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV----------NV 251 (306)
T ss_dssp HHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS----------CC
T ss_pred HHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHHHhcC----------CC
Confidence 7677899999999999998889998888776653 5898888888999988887776665432 89
Q ss_pred cEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 535 DGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 535 t~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+++|+||+|++ .++|.++++.+.+++||.|+|+||+++||++|+|++|+++||+
T Consensus 252 ~gvVlTk~D~~-~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~ 305 (306)
T 1vma_A 252 TGIILTKLDGT-AKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS 305 (306)
T ss_dssp CEEEEECGGGC-SCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTC
T ss_pred CEEEEeCCCCc-cchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99999999997 8999999999999999999999999999999999999999984
No 11
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=1.5e-34 Score=299.22 Aligned_cols=262 Identities=29% Similarity=0.469 Sum_probs=217.3
Q ss_pred cchHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHHh---------cCccccc---------cc
Q 007789 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVRI---------LTPRRSI---------DI 370 (589)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~i---------l~p~~~i---------~i 370 (589)
+..|++.|+++.|.+.|+++++++.+++++++|+++||+ .+-+.+.+- ++|...+ ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (297)
T 1j8m_F 4 LDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNL 83 (297)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Confidence 445788999999999999999999999999999999998 111122111 1111100 11
Q ss_pred c----cc-cccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccC
Q 007789 371 L----RD-VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKG 445 (589)
Q Consensus 371 L----~~-Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~ 445 (589)
+ .+ +++... +.+++|+|+||+||||++++||+++.+.+++|++.++|++|+++.+|++.+++..+++++...
T Consensus 84 ~~~~~~~~i~~~~~---~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~ 160 (297)
T 1j8m_F 84 FGGDKEPKVIPDKI---PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP 160 (297)
T ss_dssp TTCSCCCCCSCSSS---SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCT
T ss_pred hccccccccccCCC---CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecC
Confidence 1 23 555432 459999999999999999999999999999999999999999999999999999999988755
Q ss_pred CCCCHHHHHHHHHHHhcccCCCccccccCcccc--ccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHH
Q 007789 446 YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ--DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 523 (589)
Q Consensus 446 ~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~q--qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~ 523 (589)
...++..++.++++.+...++|+++|||+|+.+ ....++.+|.++.....|+.++||-++++|.+...+.+.|++.
T Consensus 161 ~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~-- 238 (297)
T 1j8m_F 161 GEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA-- 238 (297)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhh--
Confidence 567888888888888766789999999999999 7778888887776777999999999999998888776555432
Q ss_pred HhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 524 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 524 ~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
..++++|+||+|.. .++|.++++.+.++.||.|+|+||+++||++|+|++|+++||+
T Consensus 239 --------~~i~gvVlnk~D~~-~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~ 295 (297)
T 1j8m_F 239 --------SKIGTIIITKMDGT-AKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHH 295 (297)
T ss_dssp --------CTTEEEEEECGGGC-TTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCT
T ss_pred --------CCCCEEEEeCCCCC-cchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 37899999999997 7999999999999999999999999999999999999999984
No 12
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=2.2e-34 Score=300.91 Aligned_cols=256 Identities=30% Similarity=0.472 Sum_probs=207.5
Q ss_pred HHHHHHHhcC-CCcCChhhHHHHHHHHHHHHHHhhHH--------------------------HHHHHHHHhcCcccccc
Q 007789 317 FSSMFQSIAG-KANLDKADLEPALKALKDRLMTKNVA--------------------------AMEEALVRILTPRRSID 369 (589)
Q Consensus 317 ~~~~~~~~~~-~~~l~~~~l~~~l~~l~~~Ll~~~V~--------------------------al~~~l~~il~p~~~i~ 369 (589)
|++.++++.+ .+.++++ .+++++++|+++||+ ++.++|.+++.+....+
T Consensus 18 ~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (320)
T 1zu4_A 18 FSKDIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTN 93 (320)
T ss_dssp HHHHHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSCC--
T ss_pred HHHHHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCcccccc
Confidence 4455665555 4788875 578999999999988 23445556665544333
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhh---cccccee-ccC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR---RLQVPIF-EKG 445 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~---~l~v~l~-~~~ 445 (589)
++.+++|...+++ +|+|+|+||+||||++++||+++.+.+++|++.++|++|.++++|+..+.+ ..+++++ ...
T Consensus 94 ~~~~l~~~~~~~~--vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLN--IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCE--EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCe--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 4467888766666 999999999999999999999999999999999999999999999998877 6677777 444
Q ss_pred CCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhc------CCCEEEEEecCCCCCCHHHHHHHHH
Q 007789 446 YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLN------NPDLVLFVGEALVGNDAVDQLSKFN 519 (589)
Q Consensus 446 ~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~------~PdlILLVDEPt~GlD~~~q~~~f~ 519 (589)
.+.++...+.+.+..+...++|+++|||+|+.+....+|.+|.++..+. .|+.++||.+++.+.+.+.+.+.|+
T Consensus 172 ~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~~~~~ 251 (320)
T 1zu4_A 172 LNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFS 251 (320)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHHHHHh
Confidence 5667877777777766567899999999999998888888887665543 4899888889998887776654442
Q ss_pred HHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 520 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 520 ~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
+ ...++++|+||+|.. .++|.++++.+.++.||.|+|+||+++||++|+|++|+++||+
T Consensus 252 ~----------~~~i~GvVltk~d~~-~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~ 310 (320)
T 1zu4_A 252 K----------VADVSGIILTKMDST-SKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS 310 (320)
T ss_dssp T----------TSCCCEEEEECGGGC-SCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG
T ss_pred h----------cCCCcEEEEeCCCCC-CchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC
Confidence 2 247899999999996 8999999999999999999999999999999999999999984
No 13
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=1e-32 Score=284.97 Aligned_cols=258 Identities=31% Similarity=0.485 Sum_probs=208.8
Q ss_pred HHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHH-----hc----Cccccc---------ccc--
Q 007789 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVR-----IL----TPRRSI---------DIL-- 371 (589)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~-----il----~p~~~i---------~iL-- 371 (589)
|++.++++.+.+.|+++++.+.+++++..|+..|+. .+.+.+.. +. ++...+ ..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (295)
T 1ls1_A 9 LQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGG 88 (295)
T ss_dssp HHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHHCC
Confidence 677899999999999999999999999999999987 11122211 11 110000 001
Q ss_pred --cccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCC
Q 007789 372 --RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 449 (589)
Q Consensus 372 --~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d 449 (589)
+++++. +|+ +++|+|+||+||||++++||+++.+.+|+|++.++|++|.++++|+..+.+..+++++..+...+
T Consensus 89 ~~~~i~~~--~~~--~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~ 164 (295)
T 1ls1_A 89 EARLPVLK--DRN--LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGES 164 (295)
T ss_dssp SCCCCCCC--SSE--EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCC
T ss_pred CCceeecC--CCe--EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCC
Confidence 345555 455 99999999999999999999999999999999999999999999999888888888876555667
Q ss_pred HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
+......+++.+...++|++++||+|+...+..+|.++..+.....|+.++||.+++++.+.+.+.+.|+..+
T Consensus 165 p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~------- 237 (295)
T 1ls1_A 165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV------- 237 (295)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcC-------
Confidence 8777777888776578999999999999988889999988888889999999888998888877766665432
Q ss_pred CCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 530 NPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 530 ~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
.++++|+||+|.. .++|.++++.+.++.||.|+|+||+++||++|+|++|+++||.
T Consensus 238 ---~i~givlnk~d~~-~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~ 293 (295)
T 1ls1_A 238 ---GVTGLVLTKLDGD-ARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG 293 (295)
T ss_dssp ---CCCEEEEECGGGC-SSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTT
T ss_pred ---CCCEEEEECCCCC-ccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhc
Confidence 6889999999997 8999999999999999999999999999999999999999984
No 14
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=1.5e-31 Score=289.95 Aligned_cols=264 Identities=29% Similarity=0.497 Sum_probs=220.4
Q ss_pred chHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHH---------hcCccccc---------ccc
Q 007789 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVR---------ILTPRRSI---------DIL 371 (589)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~---------il~p~~~i---------~iL 371 (589)
..|++.|+++.|.+.|+++++++.+++++.+|+++||+ .+.+.+.+ .++|...+ .+|
T Consensus 7 ~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (433)
T 2xxa_A 7 DRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAM 86 (433)
T ss_dssp HHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHh
Confidence 34778999999999999999999999999999999998 22222221 11222211 122
Q ss_pred ccc--ccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-CcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 372 RDV--HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 372 ~~I--s~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
..- .+....+.|.+|+|+|++||||||++.+||.++... +.+|++..+|+||.++++|+.++.+..+++++..+.+.
T Consensus 87 ~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~ 166 (433)
T 2xxa_A 87 GEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQ 166 (433)
T ss_dssp CSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSS
T ss_pred ccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCC
Confidence 111 122234567899999999999999999999999988 88999999999999999999999999999988776667
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
++..++.+++..+...++|+++|||+|+.+....++.+|..+.....|+.++||.++++|+|++.+.+.|+..+
T Consensus 167 dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l------ 240 (433)
T 2xxa_A 167 KPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL------ 240 (433)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHS------
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccC------
Confidence 88888888888876678999999999999988889999988777789999999988999999988877775433
Q ss_pred CCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 529 PNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 529 ~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
.++++|+||+|.. .++|.++++...++.||.|+|+||.+.||..|+|++++++|+.
T Consensus 241 ----~i~gvVlnK~D~~-~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g 296 (433)
T 2xxa_A 241 ----PLTGVVLTKVDGD-ARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILG 296 (433)
T ss_dssp ----CCCCEEEECTTSS-SCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHC
T ss_pred ----CCeEEEEecCCCC-ccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhC
Confidence 6788999999996 8899999999999999999999999999999999999998863
No 15
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.97 E-value=8.1e-31 Score=284.17 Aligned_cols=263 Identities=28% Similarity=0.485 Sum_probs=213.8
Q ss_pred cchHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHHhc---------Cccccc---------cc
Q 007789 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVRIL---------TPRRSI---------DI 370 (589)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~il---------~p~~~i---------~i 370 (589)
+..|++.|+++.|.+.|+++++++.+++++.+|+++||+ .+...+.+-. ++...+ ++
T Consensus 5 ~~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 84 (432)
T 2v3c_C 5 GENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKL 84 (432)
T ss_dssp HHHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999998 2222222211 111100 11
Q ss_pred cccc--ccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccC-CC
Q 007789 371 LRDV--HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKG-YE 447 (589)
Q Consensus 371 L~~I--s~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~-~~ 447 (589)
+..- .+.+..++|.+|+|+|++||||||++++||+++...+.+|++.++|+||+++++|++.+++..+++++... ..
T Consensus 85 l~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~ 164 (432)
T 2v3c_C 85 LGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRT 164 (432)
T ss_dssp HCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSC
T ss_pred hCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCC
Confidence 2111 13334466779999999999999999999999998889999999999999999999999999999988755 55
Q ss_pred CCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~ 527 (589)
.++..++.+++..+ .++|+++|||+|+.+.+..++.+|..+.....|+.++||.+++.|+|+..+.+.|+.
T Consensus 165 ~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~------- 235 (432)
T 2v3c_C 165 KSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKE------- 235 (432)
T ss_dssp CSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHT-------
T ss_pred CCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhh-------
Confidence 56655666777766 678999999999999888899998887777789999999999999988766544421
Q ss_pred CCCCC-CccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhhC
Q 007789 528 SPNPQ-LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 528 ~~~~~-~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll~ 589 (589)
.. +++++|+||+|.. .++|.++++.+.++.||.|+|+||.+.||..|+|..++++|++
T Consensus 236 ---~~~~i~gvVlnK~D~~-~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g 294 (432)
T 2v3c_C 236 ---AVGEIGSIIVTKLDGS-AKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLG 294 (432)
T ss_dssp ---TSCSCEEEEEECSSSC-STTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTC
T ss_pred ---cccCCeEEEEeCCCCc-cchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcC
Confidence 23 5789999999996 7899999999999999999999999999999999999999874
No 16
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.97 E-value=3.1e-30 Score=284.12 Aligned_cols=262 Identities=26% Similarity=0.492 Sum_probs=214.0
Q ss_pred hHHHHHHHhcCCCcCChhhHHHHHHHHHHHHHHhhHH-----HHHHHHHH-hc--------Cccccc---------cccc
Q 007789 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA-----AMEEALVR-IL--------TPRRSI---------DILR 372 (589)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~-----al~~~l~~-il--------~p~~~i---------~iL~ 372 (589)
.|++.|+++.+.+.|+++++++++++++.+|+++||+ .+.+.+.+ .. +|...+ .+|.
T Consensus 9 ~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~ 88 (504)
T 2j37_W 9 KITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVD 88 (504)
T ss_dssp TTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHHhc
Confidence 3556788889999999999999999999999999998 22222222 11 111111 1222
Q ss_pred cc--ccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCH
Q 007789 373 DV--HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDP 450 (589)
Q Consensus 373 ~I--s~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~ 450 (589)
.- .+....++|.+|+|+|++||||||++++|+.++...+.+|++.++|+||+++++|+..+..+.+++++......++
T Consensus 89 ~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp 168 (504)
T 2j37_W 89 PGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDP 168 (504)
T ss_dssp CCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCH
T ss_pred cccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCH
Confidence 11 1222235678999999999999999999999998888899999999999999999999999889998876667788
Q ss_pred HHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCC
Q 007789 451 AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 530 (589)
Q Consensus 451 ~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~ 530 (589)
..++.+++..+...++++++|||+|+.+....++.++..+.....|+.++||-+++.|.+...++..|++.+
T Consensus 169 ~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~-------- 240 (504)
T 2j37_W 169 VIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV-------- 240 (504)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhc--------
Confidence 888888888876678999999999999988888888877666669999999999999999887776665543
Q ss_pred CCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcccccCCCHHHHHHHhh
Q 007789 531 PQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 588 (589)
Q Consensus 531 ~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~DL~~~~~~~~v~~Ll 588 (589)
.++++|+||+|.. .++|.++++.+.++.||.|+|+||.+.||..|++..++++++
T Consensus 241 --~i~gvVlNK~D~~-~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~ 295 (504)
T 2j37_W 241 --DVASVIVTKLDGH-AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295 (504)
T ss_dssp --CCCCEEEECTTSC-CCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCC
T ss_pred --CceEEEEeCCccc-cchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhc
Confidence 6788999999997 899999999999999999999999999999999999998765
No 17
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.95 E-value=5.1e-28 Score=250.04 Aligned_cols=189 Identities=26% Similarity=0.324 Sum_probs=155.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCc-EEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~G-kV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
.+++|+|||||||||++++||+++.++.| +|.+.++|+||.++.+|+..+++.++++++.. .++.. ...++..+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~~-l~~al~~~- 180 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKEE-FQQAKELF- 180 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHHH-HHHHHHHG-
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHHH-HHHHHHHh-
Confidence 39999999999999999999999998555 99999999999999999999999988887542 23333 34556554
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
.+++++++||+|+.+....++.+|.+++....|+.+++|-+++.+++... .+.+......++++|+||+
T Consensus 181 -~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~----------~~~~~~~~l~~~giVltk~ 249 (296)
T 2px0_A 181 -SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMK----------HIVKRFSSVPVNQYIFTKI 249 (296)
T ss_dssp -GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHH----------HHTTTTSSSCCCEEEEECT
T ss_pred -cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHH----------HHHHHHhcCCCCEEEEeCC
Confidence 67899999999999998888888887765556877777777777643222 2222233457899999999
Q ss_pred cccccchhhhhHhHHHhCCCEEEEecCCCc-ccccCCCHHHHHHHhhC
Q 007789 543 DTIDDKVGAALSMVYVSGAPVMFVGCGQSY-TDLKKLNVKSIVKTLLK 589 (589)
Q Consensus 543 D~~d~k~G~als~~~~~g~PI~fig~Gq~v-~DL~~~~~~~~v~~Ll~ 589 (589)
|.. .++|.++++.+.++.||.|+|+||++ +||++|++++|+++||+
T Consensus 250 D~~-~~~g~~~~~~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 250 DET-TSLGSVFNILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp TTC-SCCHHHHHHHHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred Ccc-cchhHHHHHHHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 997 89999999999999999999999999 59999999999999984
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=1.9e-24 Score=220.20 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=136.4
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc---------cchhhhhHhh-----
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLRTH----- 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R---------igaveQL~~~----- 433 (589)
..+|++|+|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.|.++.. +|+++|...+
T Consensus 24 ~~vL~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (266)
T 4g1u_C 24 QALINDVSLHIASGE--MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFS 101 (266)
T ss_dssp EEEEEEEEEEEETTC--EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCB
T ss_pred eeEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCC
Confidence 358999999999999 999999999999999999999999999999999988732 6777775432
Q ss_pred -hhccccceeccCCCCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhh-hcCCCEEEEEecCCCCCC
Q 007789 434 -ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIY-LNNPDLVLFVGEALVGND 510 (589)
Q Consensus 434 -~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~-~~~PdlILLVDEPt~GlD 510 (589)
.+++.+.... .........+.++++.+++.++....+. .||||+||+.||++|+.++. ..+|+++|| ||||+|||
T Consensus 102 v~e~l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLll-DEPts~LD 179 (266)
T 4g1u_C 102 VSEVIQMGRAP-YGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFL-DEPTSALD 179 (266)
T ss_dssp HHHHHHGGGTT-SCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEE-CCCCSSCC
T ss_pred HHHHHHhhhhh-cCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE-eCccccCC
Confidence 2222211111 1123455677888999888776555555 49999999999999992110 018999888 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
+..+...+ +.|..+.... +.+.|++|+ |. ..+....--|.++..|+-+.
T Consensus 180 ~~~~~~i~-~~l~~l~~~~---~~tvi~vtH-dl---------~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 180 LYHQQHTL-RLLRQLTRQE---PLAVCCVLH-DL---------NLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHHH-HHHHHHHHHS---SEEEEEECS-CH---------HHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHH-HHHHHHHHcC---CCEEEEEEc-CH---------HHHHHhCCEEEEEECCEEEE
Confidence 99875444 7777776432 578888887 32 12223344677777777653
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.91 E-value=9.6e-25 Score=231.45 Aligned_cols=184 Identities=18% Similarity=0.192 Sum_probs=138.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 435 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~~ 435 (589)
..+|++|||++++|+ +++|+||||||||||+++|+|+++|++|+|.+.|.|+. ++|+++|...+..
T Consensus 41 ~~aL~~vsl~i~~Ge--i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~ 118 (366)
T 3tui_C 41 IQALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118 (366)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCT
T ss_pred eEEEEeeEEEEcCCC--EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCC
Confidence 568999999999999 99999999999999999999999999999999998863 3888988654332
Q ss_pred ------ccccceeccCCC-CCHHHHHHHHHHHhcccCCCccc-cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 436 ------RLQVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 436 ------~l~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
++.++....+.. .+....+.++++.+++.++.... -..||||+||+.|||+|+ .+|+++|| ||||+
T Consensus 119 ~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~-----~~P~lLLl-DEPTs 192 (366)
T 3tui_C 119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA-----SNPKVLLC-DQATS 192 (366)
T ss_dssp TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT-----TCCSEEEE-ESTTT
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCc
Confidence 322222111111 12235677888888887654444 455999999999999999 49999998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
|||+..+...+ +.|.++... .+++.+++|+ |. ..+....--|.++..|+-+.
T Consensus 193 ~LD~~~~~~i~-~lL~~l~~~---~g~Tii~vTH-dl---------~~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 193 ALDPATTRSIL-ELLKDINRR---LGLTILLITH-EM---------DVVKRICDCVAVISNGELIE 244 (366)
T ss_dssp TSCHHHHHHHH-HHHHHHHHH---SCCEEEEEES-CH---------HHHHHHCSEEEEEETTEEEE
T ss_pred cCCHHHHHHHH-HHHHHHHHh---CCCEEEEEec-CH---------HHHHHhCCEEEEEECCEEEE
Confidence 99999876555 777777643 2788899888 32 12223344577777776653
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.91 E-value=5.5e-25 Score=220.01 Aligned_cols=183 Identities=20% Similarity=0.200 Sum_probs=134.2
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~ 434 (589)
..+|++|+|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.|.++. ++|+++|...+.
T Consensus 18 ~~~L~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGE--FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 358999999999999 99999999999999999999999999999999998762 278888865433
Q ss_pred hc------cccceeccC-CCCC---HHHHHHHHHHHhcccCC--CccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RR------LQVPIFEKG-YEKD---PAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~------l~v~l~~~~-~~~d---~~~ia~~al~~a~l~~~--d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
.. +.++..... .... ....+.++++.+++.+. +..+-..||||+||+.||++|+. +|+++||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~-----~p~llll- 169 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN-----NPPIILA- 169 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT-----CCSEEEE-
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 32 222211110 1112 23445667777776542 34455569999999999999994 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||||+|||+..+...+ +.+.++... .+.+.|++|+ |. .+. ...-.|.++..|+-+.
T Consensus 170 DEPts~LD~~~~~~i~-~~l~~l~~~---~g~tvi~vtH-d~---------~~~-~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 170 DQPTWALDSKTGEKIM-QLLKKLNEE---DGKTVVVVTH-DI---------NVA-RFGERIIYLKDGEVER 225 (235)
T ss_dssp ESTTTTSCHHHHHHHH-HHHHHHHHH---HCCEEEEECS-CH---------HHH-TTSSEEEEEETTEEEE
T ss_pred eCCcccCCHHHHHHHH-HHHHHHHHH---cCCEEEEEcC-CH---------HHH-HhCCEEEEEECCEEEE
Confidence 9999999999875544 777777542 2678888887 32 111 2345688888887764
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.91 E-value=6.2e-25 Score=224.85 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=132.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------ccchhhhhHh-----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRT----- 432 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------RigaveQL~~----- 432 (589)
.+|++|+|++++|+ +++|+||||||||||+++|+|+++|++|+|.+.|.++. ++|+++|...
T Consensus 22 ~~L~~isl~i~~Ge--~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 22 HALKGINMNIKRGE--VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99 (275)
T ss_dssp EEEEEEEEEEETTS--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS
T ss_pred eEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc
Confidence 48999999999999 99999999999999999999999999999999998862 3788888642
Q ss_pred --hhhccccceeccCCCCC---HHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 433 --HARRLQVPIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 433 --~~~~l~v~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
..+++.+.. ..++.. ....+.++++.+++..+....+. .||||+||++||++|+ .+|+++|| ||||
T Consensus 100 ~tv~e~l~~~~--~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~-----~~P~lLlL-DEPt 171 (275)
T 3gfo_A 100 ASVYQDVSFGA--VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV-----MEPKVLIL-DEPT 171 (275)
T ss_dssp SBHHHHHHHHH--HTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ECTT
T ss_pred CcHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-ECcc
Confidence 122222111 112222 23557778888888765444454 5999999999999999 49999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc-cccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF-DTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl-D~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
+|||+..+...+ +.|.++... .+.++|++|+- +.+ ....--|.++..|+-+
T Consensus 172 s~LD~~~~~~i~-~~l~~l~~~---~g~tvi~vtHdl~~~-----------~~~~drv~~l~~G~i~ 223 (275)
T 3gfo_A 172 AGLDPMGVSEIM-KLLVEMQKE---LGITIIIATHDIDIV-----------PLYCDNVFVMKEGRVI 223 (275)
T ss_dssp TTCCHHHHHHHH-HHHHHHHHH---HCCEEEEEESCCSSG-----------GGGCSEEEEEETTEEE
T ss_pred ccCCHHHHHHHH-HHHHHHHhh---CCCEEEEEecCHHHH-----------HHhCCEEEEEECCEEE
Confidence 999999875544 777777521 16788888872 222 1223356666666655
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.91 E-value=6.3e-25 Score=217.91 Aligned_cols=161 Identities=18% Similarity=0.202 Sum_probs=121.9
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~ 434 (589)
..+|++++|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|...+.
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 17 YEILKGISLSVKKGE--FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94 (224)
T ss_dssp EEEEEEEEEEEETTC--EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC
T ss_pred EeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC
Confidence 358999999999999 99999999999999999999999999999999998752 267777754332
Q ss_pred hc------cccceeccCCC-CCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 435 RR------LQVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 435 ~~------l~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
.. +.+.....+.. .+....+.++++.+++.++....+. .||||+||+.||++|+. +|+++|| ||||
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~-----~p~lllL-DEPt 168 (224)
T 2pcj_A 95 PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN-----EPILLFA-DEPT 168 (224)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT-----CCSEEEE-ESTT
T ss_pred CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCC
Confidence 22 22111111111 1123456778888888766444454 59999999999999994 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+|||+..+...+ +.|..+... +.+.|++|+
T Consensus 169 ~~LD~~~~~~~~-~~l~~l~~~----g~tvi~vtH 198 (224)
T 2pcj_A 169 GNLDSANTKRVM-DIFLKINEG----GTSIVMVTH 198 (224)
T ss_dssp TTCCHHHHHHHH-HHHHHHHHT----TCEEEEECS
T ss_pred CCCCHHHHHHHH-HHHHHHHHC----CCEEEEEcC
Confidence 999999875444 777777543 667788887
No 23
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.90 E-value=2.3e-24 Score=228.18 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=125.3
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-----------CccchhhhhHhhhhc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRTHARR 436 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-----------~RigaveQL~~~~~~ 436 (589)
..+|++|+|++++|+ +++|+|||||||||||++|+|+++|++|+|.+.|.|+ .++|+++|...+...
T Consensus 17 ~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ 94 (359)
T 3fvq_A 17 TPVLNDISLSLDPGE--ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94 (359)
T ss_dssp EEEEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTT
T ss_pred EEEEEeeEEEEcCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCC
Confidence 468999999999999 9999999999999999999999999999999999876 238999997644433
Q ss_pred c------ccceeccCCC-CCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 437 L------QVPIFEKGYE-KDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 437 l------~v~l~~~~~~-~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
+ ..++...... .+....+.++++.+++.++....+ ..||||+||++|||+|+. +|+++|| ||||+|
T Consensus 95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~-----~P~lLLL-DEPts~ 168 (359)
T 3fvq_A 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP-----DPELILL-DEPFSA 168 (359)
T ss_dssp SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-----CCSEEEE-ESTTTT
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCccc
Confidence 3 2222111111 123456778889888877654444 459999999999999994 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||+..+...+ ..+..+... .+++.|++|+
T Consensus 169 LD~~~r~~l~-~~l~~~~~~---~g~tvi~vTH 197 (359)
T 3fvq_A 169 LDEQLRRQIR-EDMIAALRA---NGKSAVFVSH 197 (359)
T ss_dssp SCHHHHHHHH-HHHHHHHHH---TTCEEEEECC
T ss_pred CCHHHHHHHH-HHHHHHHHh---CCCEEEEEeC
Confidence 9999875544 444444322 3788899888
No 24
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.90 E-value=2.8e-24 Score=217.45 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=122.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhhcc-
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL- 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~l- 437 (589)
.+|++|+|++++|+ +++|+||||||||||+++|+|+++|++|+|.+.|.++. ++|+++|...+...+
T Consensus 21 ~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 98 (257)
T 1g6h_A 21 KALDGVSISVNKGD--VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT 98 (257)
T ss_dssp EEEEEECCEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSB
T ss_pred eeEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCc
Confidence 58999999999999 99999999999999999999999999999999998752 278888865443332
Q ss_pred -----ccceec--cC-----------CCC-CHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCC
Q 007789 438 -----QVPIFE--KG-----------YEK-DPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPD 497 (589)
Q Consensus 438 -----~v~l~~--~~-----------~~~-d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~Pd 497 (589)
.+.... .+ ... +....+.++++.+++..+....+ ..||||+||+.||++|+. +|+
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~-----~p~ 173 (257)
T 1g6h_A 99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT-----NPK 173 (257)
T ss_dssp HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT-----CCS
T ss_pred HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHc-----CCC
Confidence 221111 01 111 12345677888888766544444 459999999999999994 999
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 498 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 498 lILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
++|| ||||+|||+..+...+ +.|..+... +.+.|++|+
T Consensus 174 lllL-DEPts~LD~~~~~~l~-~~l~~l~~~----g~tvi~vtH 211 (257)
T 1g6h_A 174 MIVM-DEPIAGVAPGLAHDIF-NHVLELKAK----GITFLIIEH 211 (257)
T ss_dssp EEEE-ESTTTTCCHHHHHHHH-HHHHHHHHT----TCEEEEECS
T ss_pred EEEE-eCCccCCCHHHHHHHH-HHHHHHHHC----CCEEEEEec
Confidence 9998 9999999999875444 777777543 677888887
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.90 E-value=2.9e-24 Score=218.55 Aligned_cols=181 Identities=18% Similarity=0.208 Sum_probs=132.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------ccchhhhhHhhhhcc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTHARRL 437 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------RigaveQL~~~~~~l 437 (589)
.+|++|+|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.|.++. ++|+++|...+...+
T Consensus 38 ~vL~~vsl~i~~Ge--i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 115 (263)
T 2olj_A 38 EVLKGINVHIREGE--VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM 115 (263)
T ss_dssp EEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTS
T ss_pred EEEEeeEEEEcCCC--EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCC
Confidence 58999999999999 99999999999999999999999999999999997752 278888864332222
Q ss_pred c----cceec-cCCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC
Q 007789 438 Q----VPIFE-KGYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 508 (589)
Q Consensus 438 ~----v~l~~-~~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G 508 (589)
. +.+.. ..++.. ....+.++++.+++.++....+ ..||||+||+.||++|+. +|+++|| ||||+|
T Consensus 116 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~-----~p~lllL-DEPts~ 189 (263)
T 2olj_A 116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM-----EPKIMLF-DEPTSA 189 (263)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-----CCSEEEE-ESTTTT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC-----CCCEEEE-eCCccc
Confidence 1 11111 111212 2345677888888766544444 459999999999999994 9999998 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 509 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 509 lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||+..+.. +.+.|.++... +.+.|++|+ |. ..+....--|.++..|+-+
T Consensus 190 LD~~~~~~-~~~~l~~l~~~----g~tvi~vtH-d~---------~~~~~~~d~v~~l~~G~i~ 238 (263)
T 2olj_A 190 LDPEMVGE-VLSVMKQLANE----GMTMVVVTH-EM---------GFAREVGDRVLFMDGGYII 238 (263)
T ss_dssp SCHHHHHH-HHHHHHHHHHT----TCEEEEECS-CH---------HHHHHHCSEEEEEETTEEE
T ss_pred CCHHHHHH-HHHHHHHHHhC----CCEEEEEcC-CH---------HHHHHhCCEEEEEECCEEE
Confidence 99998754 44777777543 677788887 32 1122233456777777654
No 26
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.90 E-value=1.3e-24 Score=220.75 Aligned_cols=181 Identities=18% Similarity=0.171 Sum_probs=131.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------------------ccch
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------------------RSGA 426 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------------------Riga 426 (589)
.+|++|+|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.|.++. ++|+
T Consensus 20 ~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (262)
T 1b0u_A 20 EVLKGVSLQARAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTM 97 (262)
T ss_dssp EEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEE
T ss_pred EEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEE
Confidence 58999999999999 99999999999999999999999999999999997753 2678
Q ss_pred hhhhHhhhhccc----cceec-cCCCCC---HHHHHHHHHHHhcccCC--CccccccCccccccHHHHHHHHhhhhhcCC
Q 007789 427 VEQLRTHARRLQ----VPIFE-KGYEKD---PAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNP 496 (589)
Q Consensus 427 veQL~~~~~~l~----v~l~~-~~~~~d---~~~ia~~al~~a~l~~~--d~vliDTSGg~qqr~~LaraL~kl~~~~~P 496 (589)
++|...+...+. +.+.. ..++.. ....+.++++.+++.++ +..+-..||||+||+.||++|+. +|
T Consensus 98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~-----~p 172 (262)
T 1b0u_A 98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM-----EP 172 (262)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHT-----CC
T ss_pred EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhc-----CC
Confidence 887543322221 11111 111222 23456778888887654 34444559999999999999994 99
Q ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 497 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 497 dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
+++|| ||||+|||+..+... .+.|.++... +.++|++|+ |. ..+....--|.++..|+-+
T Consensus 173 ~lllL-DEPts~LD~~~~~~~-~~~l~~l~~~----g~tvi~vtH-d~---------~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 173 DVLLF-DEPTSALDPELVGEV-LRIMQQLAEE----GKTMVVVTH-EM---------GFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp SEEEE-ESTTTTSCHHHHHHH-HHHHHHHHHT----TCCEEEECS-CH---------HHHHHHCSEEEEEETTEEE
T ss_pred CEEEE-eCCCccCCHHHHHHH-HHHHHHHHhC----CCEEEEEeC-CH---------HHHHHhCCEEEEEECCEEE
Confidence 99998 999999999987544 4777777543 677888887 32 1112223456777777654
No 27
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.90 E-value=2.8e-24 Score=229.11 Aligned_cols=162 Identities=19% Similarity=0.117 Sum_probs=126.6
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcccc-
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV- 439 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~v- 439 (589)
..+|++|+|++++|+ +++|+|||||||||||++|+|+++|++|+|.+.|.++. ++|+++|...+...+.+
T Consensus 16 ~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 16 VVVSKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 93 (381)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHH
T ss_pred EEEEeeeEEEECCCC--EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHH
Confidence 468999999999999 99999999999999999999999999999999998863 48999997644433321
Q ss_pred ---ceeccCCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 440 ---PIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 440 ---~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.+.....+.. ....+.++++.+++.++....+ ..||||+||++|||+|+. +|+++|| ||||++||+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~-----~P~lLLL-DEPts~LD~~ 167 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA-----EPSVFLL-DEPLSNLDAA 167 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH-----CCSEEEE-ESTTTTSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc-----CCCEEEE-ECCCcCCCHH
Confidence 1111112222 2356777888888876544444 559999999999999995 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+...+ +.|..+... .+++.|++|+
T Consensus 168 ~~~~l~-~~l~~l~~~---~g~tii~vTH 192 (381)
T 3rlf_A 168 LRVQMR-IEISRLHKR---LGRTMIYVTH 192 (381)
T ss_dssp HHHHHH-HHHHHHHHH---HCCEEEEECS
T ss_pred HHHHHH-HHHHHHHHh---CCCEEEEEEC
Confidence 875544 667766543 2788899888
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=4.2e-24 Score=214.12 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=130.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC----------ccchhhhhHhhhh---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR--- 435 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~----------RigaveQL~~~~~--- 435 (589)
.+|++++|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.|.++. ++|+++|...+..
T Consensus 20 ~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~lt 97 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELT 97 (240)
T ss_dssp EEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSB
T ss_pred eEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCc
Confidence 58999999999999 99999999999999999999999999999999997752 2788888653322
Q ss_pred ---ccccceeccCCCCCHHHHHHHHHHHhc-ccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 436 ---RLQVPIFEKGYEKDPAIVAKEAIQEAT-RNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 436 ---~l~v~l~~~~~~~d~~~ia~~al~~a~-l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
++.+..+...........+.++++.++ +..+....+ ..||||+||+.||++|+. +|+++|| ||||+|||
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-----~p~lllL-DEPts~LD 171 (240)
T 1ji0_A 98 VYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS-----RPKLLMM-DEPSLGLA 171 (240)
T ss_dssp HHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT-----CCSEEEE-ECTTTTCC
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-cCCcccCC
Confidence 222211111111122345667777774 665544444 459999999999999994 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
+..+.. +.+.|..+... +.+.|++|+ |. .......--|.++..|+-+
T Consensus 172 ~~~~~~-l~~~l~~~~~~----g~tvi~vtH-d~---------~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 172 PILVSE-VFEVIQKINQE----GTTILLVEQ-NA---------LGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp HHHHHH-HHHHHHHHHHT----TCCEEEEES-CH---------HHHHHHCSEEEEEETTEEE
T ss_pred HHHHHH-HHHHHHHHHHC----CCEEEEEec-CH---------HHHHHhCCEEEEEECCEEE
Confidence 998754 44777777542 677888887 32 1112223356677777654
No 29
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=2.8e-24 Score=217.73 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=122.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~-- 438 (589)
.+|++|+|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|...+...+.
T Consensus 29 ~vl~~vsl~i~~Ge--i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 106 (256)
T 1vpl_A 29 EILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGI 106 (256)
T ss_dssp EEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHH
T ss_pred EEEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHH
Confidence 58999999999999 99999999999999999999999999999999998753 3788888653332221
Q ss_pred --cceeccCCCCCH---HHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 439 --VPIFEKGYEKDP---AIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 439 --v~l~~~~~~~d~---~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
+.++...++... ...+.++++.+++.++....+ ..||||+||+.||++|+. +|+++|| ||||+|||+.
T Consensus 107 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~-----~p~lllL-DEPts~LD~~ 180 (256)
T 1vpl_A 107 EYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV-----NPRLAIL-DEPTSGLDVL 180 (256)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT-----CCSEEEE-ESTTTTCCHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCccccCHH
Confidence 111111112222 245677888888766544444 459999999999999995 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.. +.+.|..+... +.++|++|+
T Consensus 181 ~~~~-l~~~l~~l~~~----g~tiiivtH 204 (256)
T 1vpl_A 181 NARE-VRKILKQASQE----GLTILVSSH 204 (256)
T ss_dssp HHHH-HHHHHHHHHHT----TCEEEEEEC
T ss_pred HHHH-HHHHHHHHHhC----CCEEEEEcC
Confidence 8754 44777777542 667788887
No 30
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.89 E-value=1.1e-23 Score=224.25 Aligned_cols=161 Identities=17% Similarity=0.138 Sum_probs=121.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcccc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV-- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~v-- 439 (589)
.+|++++|++++|+ +++|+|||||||||||++|+|+++|++|+|.+.+.++. ++|+++|...+...+.+
T Consensus 25 ~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 102 (372)
T 1v43_A 25 TAVNKLNLTIKDGE--FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYE 102 (372)
T ss_dssp EEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHH
T ss_pred EEEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHH
Confidence 58999999999999 99999999999999999999999999999999998763 38999997655444322
Q ss_pred --ceeccCCCCCH---HHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 440 --PIFEKGYEKDP---AIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 440 --~l~~~~~~~d~---~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
.+....++... ...+.++++.+++.++....+ ..||||+||++|||+|+. +|+++|| ||||++||+..
T Consensus 103 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~-----~P~lLLL-DEP~s~LD~~~ 176 (372)
T 1v43_A 103 NIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV-----EPDVLLM-DEPLSNLDAKL 176 (372)
T ss_dssp HHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT-----CCSEEEE-ESTTTTSCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-cCCCccCCHHH
Confidence 11111112222 345677888888876654445 459999999999999994 9999998 99999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+... .+.|..+... .+++.|++|+
T Consensus 177 r~~l-~~~l~~l~~~---~g~tvi~vTH 200 (372)
T 1v43_A 177 RVAM-RAEIKKLQQK---LKVTTIYVTH 200 (372)
T ss_dssp HHHH-HHHHHHHHHH---HTCEEEEEES
T ss_pred HHHH-HHHHHHHHHh---CCCEEEEEeC
Confidence 7544 4667666542 2678888887
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.89 E-value=7.9e-24 Score=215.30 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=122.4
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------ccchhhhhH-hh------h
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLR-TH------A 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------RigaveQL~-~~------~ 434 (589)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|.. .. .
T Consensus 20 ~~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGE--CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 358999999999999 99999999999999999999999999999999998752 378888863 11 2
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--CCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--GSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+++.+.........+....+.++++.+++. ++....+ ..||||+||+.||++|+. +|+++|| ||||+|||+
T Consensus 98 enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~-----~p~lllL-DEPts~LD~ 171 (266)
T 2yz2_A 98 DEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH-----EPDILIL-DEPLVGLDR 171 (266)
T ss_dssp HHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT-----CCSEEEE-ESTTTTCCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-cCccccCCH
Confidence 222211100011122345567888888876 5434444 559999999999999994 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+... .+.|..+... +.+.|++|+
T Consensus 172 ~~~~~l-~~~l~~l~~~----g~tii~vtH 196 (266)
T 2yz2_A 172 EGKTDL-LRIVEKWKTL----GKTVILISH 196 (266)
T ss_dssp HHHHHH-HHHHHHHHHT----TCEEEEECS
T ss_pred HHHHHH-HHHHHHHHHc----CCEEEEEeC
Confidence 987544 4777777542 667788887
No 32
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.89 E-value=3.7e-24 Score=225.94 Aligned_cols=158 Identities=19% Similarity=0.174 Sum_probs=125.1
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcc-----
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL----- 437 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l----- 437 (589)
+|++++|++++|+ +++|+|||||||||||++|+|+++|++|+|.+.+.++. ++|+++|...+...+
T Consensus 15 ~l~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGE--YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTC--EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCC--EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHH
Confidence 8999999999999 99999999999999999999999999999999998863 388999865443333
Q ss_pred -ccceeccCCCCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 438 -QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 438 -~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
.+.+...+... . ..+.++++.+++.++....+. .||||+||++|||+|+. +|+++|| ||||+|||+..+.
T Consensus 93 l~~~~~~~~~~~-~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~-----~P~lLLL-DEP~s~LD~~~~~ 164 (348)
T 3d31_A 93 LEFGMRMKKIKD-P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT-----NPKILLL-DEPLSALDPRTQE 164 (348)
T ss_dssp HHHHHHHHCCCC-H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS-----CCSEEEE-ESSSTTSCHHHHH
T ss_pred HHHHHHHcCCCH-H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-ECccccCCHHHHH
Confidence 22211111122 2 667788999988776555554 59999999999999994 9999998 9999999999875
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
. +.+.|..+... .+++.|++|+
T Consensus 165 ~-l~~~l~~l~~~---~g~tii~vTH 186 (348)
T 3d31_A 165 N-AREMLSVLHKK---NKLTVLHITH 186 (348)
T ss_dssp H-HHHHHHHHHHH---TTCEEEEEES
T ss_pred H-HHHHHHHHHHh---cCCEEEEEeC
Confidence 4 44677776543 2788888887
No 33
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=6.8e-24 Score=224.41 Aligned_cols=162 Identities=18% Similarity=0.164 Sum_probs=125.2
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcccc-
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV- 439 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~v- 439 (589)
..+|++++|++++|+ +++|+|||||||||||++|+|+++|++|+|.+.+.++. ++|+++|...+...+.+
T Consensus 28 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 28 ARSVRGVSFQIREGE--MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TTCEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred CEEEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 358999999999999 99999999999999999999999999999999998762 48999997644333321
Q ss_pred ---ceeccCCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 440 ---PIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 440 ---~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.+....++.. ....+.++++.+++.++....+ ..||||+||++|||+|+. +|+++|| ||||+|||+.
T Consensus 106 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~-----~P~lLLL-DEP~s~LD~~ 179 (355)
T 1z47_A 106 DNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP-----RPQVLLF-DEPFAAIDTQ 179 (355)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-----CCSEEEE-ESTTCCSSHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccCCHH
Confidence 1111111212 2355678888888876644445 459999999999999994 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+... .+.|..+... .+++.|++|+
T Consensus 180 ~r~~l-~~~l~~l~~~---~g~tvi~vTH 204 (355)
T 1z47_A 180 IRREL-RTFVRQVHDE---MGVTSVFVTH 204 (355)
T ss_dssp HHHHH-HHHHHHHHHH---HTCEEEEECS
T ss_pred HHHHH-HHHHHHHHHh---cCCEEEEECC
Confidence 87544 4667666542 2678888887
No 34
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.89 E-value=2e-24 Score=213.35 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=121.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc----CccchhhhhHhhhhccc----cc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHARRLQ----VP 440 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt----~RigaveQL~~~~~~l~----v~ 440 (589)
.+|++++|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++ .++|+++|...+...+. +.
T Consensus 23 ~il~~vsl~i~~Ge--~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 100 (214)
T 1sgw_A 23 PVLERITMTIEKGN--VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLK 100 (214)
T ss_dssp EEEEEEEEEEETTC--CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred eEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHH
Confidence 58999999999999 9999999999999999999999999999999999775 24788888654322221 11
Q ss_pred eecc--CCCCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHH
Q 007789 441 IFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 517 (589)
Q Consensus 441 l~~~--~~~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 517 (589)
+... +...+ ...+.++++.+++..+ ...+. .||||+||+.||++|+. +|+++|| ||||+|||+..+...
T Consensus 101 ~~~~~~~~~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~-----~p~lllL-DEPts~LD~~~~~~l 172 (214)
T 1sgw_A 101 AVASLYGVKVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV-----NAEIYVL-DDPVVAIDEDSKHKV 172 (214)
T ss_dssp HHHHHTTCCCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS-----CCSEEEE-ESTTTTSCTTTHHHH
T ss_pred HHHHhcCCchH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHh-----CCCEEEE-ECCCcCCCHHHHHHH
Confidence 1111 11223 4567788888888766 44454 49999999999999994 9999998 999999999887544
Q ss_pred HHHHHHHhhcCCCCCCccEEEEcc
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.|..+.+. +.+.|++|.
T Consensus 173 -~~~l~~~~~~----g~tiiivtH 191 (214)
T 1sgw_A 173 -LKSILEILKE----KGIVIISSR 191 (214)
T ss_dssp -HHHHHHHHHH----HSEEEEEES
T ss_pred -HHHHHHHHhC----CCEEEEEeC
Confidence 4677766532 567777776
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.89 E-value=4.7e-24 Score=214.13 Aligned_cols=159 Identities=19% Similarity=0.126 Sum_probs=120.7
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcccc---
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV--- 439 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~v--- 439 (589)
+|++++|++++ + +++|+||||||||||+++|+|+++|++|+|.+.|.++. ++|+++|...+...+.+
T Consensus 14 ~l~~isl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-D--YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-S--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-E--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 48999999999 9 99999999999999999999999999999999997752 38899886533332211
Q ss_pred -ceeccCCCC-CHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 440 -PIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 440 -~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
.+....++. .....+.++++.+++.++....+. .||||+||+.||++|+. +|+++|| ||||+|||+..+..
T Consensus 91 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-----~p~lllL-DEPts~LD~~~~~~ 164 (240)
T 2onk_A 91 IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI-----QPRLLLL-DEPLSAVDLKTKGV 164 (240)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-----CCSSBEE-ESTTSSCCHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccCCHHHHHH
Confidence 111111111 123456778888888766444454 49999999999999994 9999998 99999999998754
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
. .+.|..+... .+.+.|++|+
T Consensus 165 ~-~~~l~~l~~~---~g~tvi~vtH 185 (240)
T 2onk_A 165 L-MEELRFVQRE---FDVPILHVTH 185 (240)
T ss_dssp H-HHHHHHHHHH---HTCCEEEEES
T ss_pred H-HHHHHHHHHh---cCCEEEEEeC
Confidence 4 4777776532 1567788887
No 36
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.89 E-value=8.5e-24 Score=216.77 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=120.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-----------ccchhhhhHhh----
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTH---- 433 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-----------RigaveQL~~~---- 433 (589)
.+|++|+|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|....
T Consensus 35 ~vL~~isl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (279)
T 2ihy_A 35 TILKKISWQIAKGD--KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQE 112 (279)
T ss_dssp EEEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCT
T ss_pred EEEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCC
Confidence 58999999999999 99999999999999999999999999999999997753 37888886532
Q ss_pred ----hhccccceec--cCC---CCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 434 ----ARRLQVPIFE--KGY---EKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 434 ----~~~l~v~l~~--~~~---~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
.+++.+.... ..+ ..+....+.++++.+++..+....+ ..||||+||+.||++|+. +|+++|| |
T Consensus 113 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~-----~p~lLlL-D 186 (279)
T 2ihy_A 113 GERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG-----QPQVLIL-D 186 (279)
T ss_dssp TSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT-----CCSEEEE-E
T ss_pred CCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhC-----CCCEEEE-e
Confidence 2222221110 001 1112345677888888765544444 459999999999999995 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccE--EEEcc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG--ILLTK 541 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~--IIlTK 541 (589)
|||+|||+..+... .+.|..+... +.+. |++|+
T Consensus 187 EPts~LD~~~~~~l-~~~l~~l~~~----g~tv~~iivtH 221 (279)
T 2ihy_A 187 EPAAGLDFIARESL-LSILDSLSDS----YPTLAMIYVTH 221 (279)
T ss_dssp STTTTCCHHHHHHH-HHHHHHHHHH----CTTCEEEEEES
T ss_pred CCccccCHHHHHHH-HHHHHHHHHC----CCEEEEEEEec
Confidence 99999999987544 4777777543 4566 77776
No 37
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.89 E-value=7.9e-24 Score=224.27 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=124.7
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhccc--
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l~-- 438 (589)
..+|++++|++++|+ +++|+|||||||||||++|+|+++|++|+|.+.+.++. ++|+++|...+...+.
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGE--FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVF 93 (359)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHH
T ss_pred EEEEeeeEEEEcCCC--EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 358999999999999 99999999999999999999999999999999998762 4889999654433332
Q ss_pred --cceeccCCCCCH---HHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 439 --VPIFEKGYEKDP---AIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 439 --v~l~~~~~~~d~---~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
+.+....++... ...+.++++.+++.++....+ ..||||+||++|||+|+. +|+++|| ||||+|||+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~-----~P~lLLL-DEP~s~LD~~ 167 (359)
T 2yyz_A 94 ENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK-----QPKVLLF-DEPLSNLDAN 167 (359)
T ss_dssp HHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-----CCSEEEE-ESTTTTSCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-ECCcccCCHH
Confidence 112111112111 245677888888876654444 459999999999999995 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+.. +.+.|..+... .+++.|++|+
T Consensus 168 ~r~~-l~~~l~~l~~~---~g~tvi~vTH 192 (359)
T 2yyz_A 168 LRMI-MRAEIKHLQQE---LGITSVYVTH 192 (359)
T ss_dssp HHHH-HHHHHHHHHHH---HCCEEEEEES
T ss_pred HHHH-HHHHHHHHHHh---cCCEEEEEcC
Confidence 8754 44667666542 2678888887
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.89 E-value=9.3e-24 Score=223.95 Aligned_cols=162 Identities=20% Similarity=0.199 Sum_probs=125.4
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------ccchhhhhHhhhhcc---
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL--- 437 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------RigaveQL~~~~~~l--- 437 (589)
..+|++++|++++|+ +++|+|||||||||||++|+|+++|++|+|.+.+.++. ++|+++|...+...+
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 16 FTALNNINLKIKDGE--FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp SEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHH
T ss_pred EEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHH
Confidence 358999999999999 99999999999999999999999999999999998762 388999965443333
Q ss_pred ---ccceeccCCCC-CHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 438 ---QVPIFEKGYEK-DPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 438 ---~v~l~~~~~~~-d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.+.+...+... +....+.++++.+++.++....+. .||||+||++|||+|+. +|+++|| ||||+|||+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~-----~P~lLLL-DEP~s~LD~~ 167 (362)
T 2it1_A 94 KNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK-----EPEVLLL-DEPLSNLDAL 167 (362)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT-----CCSEEEE-ESGGGGSCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-ECccccCCHH
Confidence 22211111111 123456788898888776555554 49999999999999994 9999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 513 DQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 513 ~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+... .+.|..+... .+++.|++|+
T Consensus 168 ~r~~l-~~~l~~l~~~---~g~tvi~vTH 192 (362)
T 2it1_A 168 LRLEV-RAELKRLQKE---LGITTVYVTH 192 (362)
T ss_dssp HHHHH-HHHHHHHHHH---HTCEEEEEES
T ss_pred HHHHH-HHHHHHHHHh---CCCEEEEECC
Confidence 87544 4667666532 2678888887
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.89 E-value=4.4e-24 Score=225.77 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=123.4
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------------ccchhhhhHhhhhcc
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARRL 437 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------------RigaveQL~~~~~~l 437 (589)
+|++++|++++|+ +++|+|||||||||||++|+|+++|++|+|.+.+.++. ++|+++|...+...+
T Consensus 20 vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGE--RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTC--EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 8999999999999 99999999999999999999999999999999987642 378999865443333
Q ss_pred c----cceeccCCCCC---HHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 438 Q----VPIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 438 ~----v~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
. +.+....++.. ....+.++++.+++.++....+. .||||+||++|||+|+. +|+++|| ||||+||
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~-----~P~lLLL-DEP~s~L 171 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK-----DPSLLLL-DEPFSNL 171 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-----CCSEEEE-ESTTTTS
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh-----CCCEEEE-ECCcccC
Confidence 1 11211112222 23557788888888776554554 59999999999999995 9999998 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 510 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+..+... .+.|..+... .+++.|++|+
T Consensus 172 D~~~r~~l-~~~l~~l~~~---~g~tvi~vTH 199 (353)
T 1oxx_K 172 DARMRDSA-RALVKEVQSR---LGVTLLVVSH 199 (353)
T ss_dssp CGGGHHHH-HHHHHHHHHH---HCCEEEEEES
T ss_pred CHHHHHHH-HHHHHHHHHh---cCCEEEEEeC
Confidence 99876544 4667666532 2678888887
No 40
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.89 E-value=8.4e-24 Score=225.12 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=124.0
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC-------------ccchhhhhHhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~-------------RigaveQL~~~~ 434 (589)
..+|++++|++++|+ +++|+|||||||||||++|+|+++|++|+|.+.+.++. ++|+++|...+.
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~ 93 (372)
T 1g29_1 16 VTAVREMSLEVKDGE--FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (372)
T ss_dssp EEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccC
Confidence 358999999999999 99999999999999999999999999999999987642 378888865443
Q ss_pred hccc----cceeccCCCCC---HHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 435 RRLQ----VPIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 435 ~~l~----v~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
..+. +.+....++.. ....+.++++.+++.++....+ ..||||+||++|||+|+. +|+++|| ||||
T Consensus 94 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~-----~P~lLLL-DEP~ 167 (372)
T 1g29_1 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR-----KPQVFLM-DEPL 167 (372)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT-----CCSEEEE-ECTT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-CCCC
Confidence 3331 11111111222 2345677888888876644444 459999999999999995 9999998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
++||+..+.... ..|..+... .+++.|++|+
T Consensus 168 s~LD~~~r~~l~-~~l~~l~~~---~g~tvi~vTH 198 (372)
T 1g29_1 168 SNLDAKLRVRMR-AELKKLQRQ---LGVTTIYVTH 198 (372)
T ss_dssp TTSCHHHHHHHH-HHHHHHHHH---HTCEEEEEES
T ss_pred ccCCHHHHHHHH-HHHHHHHHh---cCCEEEEECC
Confidence 999999875444 666666542 2678888887
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.88 E-value=3.9e-23 Score=208.54 Aligned_cols=178 Identities=16% Similarity=0.138 Sum_probs=129.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhhhcccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQV 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~~~l~v 439 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+ |+|.+.+.++. ++|+++|...+...+.+
T Consensus 14 ~vl~~vsl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGE--ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 47999999999999 99999999999999999999999999 99999998752 37888885433222211
Q ss_pred ----ceeccCCCCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCC-------EEEEEecCCC
Q 007789 440 ----PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPD-------LVLFVGEALV 507 (589)
Q Consensus 440 ----~l~~~~~~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~Pd-------lILLVDEPt~ 507 (589)
.+. ...... ...+.++++.+++.++....+ ..||||+||+.||++|+. +|+ ++|| ||||+
T Consensus 91 ~e~l~~~-~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-----~p~~~~~~~~lllL-DEPts 162 (249)
T 2qi9_C 91 WHYLTLH-QHDKTR-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ-----ITPQANPAGQLLLL-DEPMN 162 (249)
T ss_dssp HHHHHTT-CSSTTC-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH-----HCTTTCTTCCEEEE-SSTTT
T ss_pred HHHHHHh-hccCCc-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc-----CCCcCCCCCeEEEE-ECCcc
Confidence 111 111112 455677888888766544444 459999999999999995 999 9988 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 508 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 508 GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
|||+..+.. +.+.|..+... +.+.|++|+ |. .......--|.++..|+-+
T Consensus 163 ~LD~~~~~~-l~~~l~~l~~~----g~tviivtH-d~---------~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 163 SLDVAQQSA-LDKILSALSQQ----GLAIVMSSH-DL---------NHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp TCCHHHHHH-HHHHHHHHHHT----TCEEEEECS-CH---------HHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHH-HHHHHHHHHhC----CCEEEEEeC-CH---------HHHHHhCCEEEEEECCEEE
Confidence 999998754 44777777543 567788776 32 1122233456667666654
No 42
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.88 E-value=5.3e-23 Score=207.93 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=127.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhh------hcccccee
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA------RRLQVPIF 442 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~------~~l~v~l~ 442 (589)
.+|++++|++++|+ +++|+||||||||||+++|+|+++|++|+|.+. .++|+++|...+. +++.+...
T Consensus 19 ~vl~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~----~~i~~v~q~~~~~~~~tv~enl~~~~~ 92 (253)
T 2nq2_C 19 FLFQQLNFDLNKGD--ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY----QSIGFVPQFFSSPFAYSVLDIVLMGRS 92 (253)
T ss_dssp EEEEEEEEEEETTC--EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC----SCEEEECSCCCCSSCCBHHHHHHGGGG
T ss_pred eEEEEEEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe----ccEEEEcCCCccCCCCCHHHHHHHhhh
Confidence 58999999999999 999999999999999999999999999999832 3588888865332 22222111
Q ss_pred cc-C----CCCCHHHHHHHHHHHhcccCCCcccc-ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 443 EK-G----YEKDPAIVAKEAIQEATRNGSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 443 ~~-~----~~~d~~~ia~~al~~a~l~~~d~vli-DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
.. + ........+.++++.+++.++....+ ..||||+||+.||++|+. +|+++|| ||||+|||+..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-----~p~lllL-DEPts~LD~~~~~~ 166 (253)
T 2nq2_C 93 THINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS-----ECKLILL-DEPTSALDLANQDI 166 (253)
T ss_dssp GGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT-----TCSEEEE-SSSSTTSCHHHHHH
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCcccCCHHHHHH
Confidence 00 1 01112355677888888766544444 459999999999999995 9999998 99999999998754
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
. .+.|..+.... +.+.|++|+ |. ..+....--|.++..|+ +
T Consensus 167 l-~~~l~~l~~~~---g~tvi~vtH-d~---------~~~~~~~d~v~~l~~G~-~ 207 (253)
T 2nq2_C 167 V-LSLLIDLAQSQ---NMTVVFTTH-QP---------NQVVAIANKTLLLNKQN-F 207 (253)
T ss_dssp H-HHHHHHHHHTS---CCEEEEEES-CH---------HHHHHHCSEEEEEETTE-E
T ss_pred H-HHHHHHHHHhc---CCEEEEEec-CH---------HHHHHhCCEEEEEeCCe-E
Confidence 4 47777775432 567788876 32 11222334577777777 5
No 43
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.88 E-value=3.6e-23 Score=208.36 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=115.3
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhh----
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~---- 434 (589)
..+|++++|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|...+.
T Consensus 22 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 99 (247)
T 2ff7_A 22 PVILDNINLSIKQGE--VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 99 (247)
T ss_dssp CEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBH
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccH
Confidence 358999999999999 99999999999999999999999999999999998762 277888854332
Q ss_pred -hccccceeccCCCCCHHHHHHHHHHHhcccCCC------------ccccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 435 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSD------------VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 435 -~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~d------------~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
+++.+. . .... ...+.++++.+++..+. ...-..||||+||+.|||+|+. +|+++||
T Consensus 100 ~enl~~~--~--~~~~-~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~-----~p~lllL 169 (247)
T 2ff7_A 100 IDNISLA--N--PGMS-VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN-----NPKILIF 169 (247)
T ss_dssp HHHHTTT--C--TTCC-HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT-----CCSEEEE
T ss_pred HHHHhcc--C--CCCC-HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE
Confidence 222211 1 1112 23345555555443211 1223459999999999999995 9999998
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+... .+.|..+.. +.+.|++|+
T Consensus 170 -DEPts~LD~~~~~~i-~~~l~~~~~-----g~tviivtH 202 (247)
T 2ff7_A 170 -DEATSALDYESEHVI-MRNMHKICK-----GRTVIIIAH 202 (247)
T ss_dssp -CCCCSCCCHHHHHHH-HHHHHHHHT-----TSEEEEECS
T ss_pred -eCCcccCCHHHHHHH-HHHHHHHcC-----CCEEEEEeC
Confidence 999999999987544 477776631 678888887
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.87 E-value=6.9e-23 Score=206.46 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=115.3
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHh--HhhCCcEEEEcccccC----------ccchhhhhHhhhh
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF----------RSGAVEQLRTHAR 435 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl--l~~~~GkV~l~~~Dt~----------RigaveQL~~~~~ 435 (589)
..+|++++|++++|+ +++|+||||||||||++.|+|+ ++|+.|+|.+.|.++. .+++++|...+..
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 16 ETILKGVNLVVPKGE--VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp EEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred EEEEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 358999999999999 9999999999999999999998 7899999999998762 1567777543322
Q ss_pred cc------ccceec-cCCCCC---HHHHHHHHHHHhcc-cCC-Cccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 436 RL------QVPIFE-KGYEKD---PAIVAKEAIQEATR-NGS-DVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 436 ~l------~v~l~~-~~~~~d---~~~ia~~al~~a~l-~~~-d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
.+ ...... ...... ....+.++++.+++ .++ +..+-. .||||+||+.||++|+. +|+++||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~-----~p~lllL- 167 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL-----EPTYAVL- 167 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH-----CCSEEEE-
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 22 111100 111111 12456677888877 344 334445 79999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+...+ +.|..+.. .+.+.|++|+
T Consensus 168 DEPts~LD~~~~~~l~-~~l~~l~~----~g~tvi~vtH 201 (250)
T 2d2e_A 168 DETDSGLDIDALKVVA-RGVNAMRG----PNFGALVITH 201 (250)
T ss_dssp ECGGGTTCHHHHHHHH-HHHHHHCS----TTCEEEEECS
T ss_pred eCCCcCCCHHHHHHHH-HHHHHHHh----cCCEEEEEec
Confidence 9999999999875444 67776643 2678888887
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=1e-22 Score=207.16 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=115.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC------ccc-hhhhhHhhhhccc---
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSG-AVEQLRTHARRLQ--- 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~------Rig-aveQL~~~~~~l~--- 438 (589)
.+|++++|+++ |+ +++|+||||||||||+++|+|++ |+.|+|.+.+.++. ++| +++|...+ .+.
T Consensus 19 ~il~~vsl~i~-Ge--~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~e 92 (263)
T 2pjz_A 19 FSLENINLEVN-GE--KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVND 92 (263)
T ss_dssp EEEEEEEEEEC-SS--EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHH
T ss_pred eeEEeeeEEEC-CE--EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHH
Confidence 58999999999 99 99999999999999999999999 99999999997653 488 99997644 221
Q ss_pred -cceeccCCCCCHHHHHHHHHHHhccc-CCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 439 -VPIFEKGYEKDPAIVAKEAIQEATRN-GSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 439 -v~l~~~~~~~d~~~ia~~al~~a~l~-~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
+.++...+.. ....+.++++.+++. .+....+. .||||+||+.||++|+. +|+++|| ||||+|||+..+.
T Consensus 93 nl~~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~-----~p~lllL-DEPts~LD~~~~~ 165 (263)
T 2pjz_A 93 IVYLYEELKGL-DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS-----QPEIVGL-DEPFENVDAARRH 165 (263)
T ss_dssp HHHHHHHHTCC-CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT-----CCSEEEE-ECTTTTCCHHHHH
T ss_pred HHHHhhhhcch-HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh-----CCCEEEE-ECCccccCHHHHH
Confidence 1111111122 234567788888776 54444444 49999999999999994 9999998 9999999999875
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+ +.|..+.. +.|++|+
T Consensus 166 ~l~-~~L~~~~~-------tviivtH 183 (263)
T 2pjz_A 166 VIS-RYIKEYGK-------EGILVTH 183 (263)
T ss_dssp HHH-HHHHHSCS-------EEEEEES
T ss_pred HHH-HHHHHhcC-------cEEEEEc
Confidence 433 55555432 6777776
No 46
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=9.9e-23 Score=207.91 Aligned_cols=180 Identities=20% Similarity=0.198 Sum_probs=123.3
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~----- 433 (589)
..+|++|+|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|...+
T Consensus 32 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv 109 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGK--VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109 (271)
T ss_dssp SCCEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBH
T ss_pred ceeeEeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccH
Confidence 358999999999999 99999999999999999999999999999999998762 37888885432
Q ss_pred hhccccceeccCCCC-CHH-H-----HHHHHHHHh--cccCC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEe
Q 007789 434 ARRLQVPIFEKGYEK-DPA-I-----VAKEAIQEA--TRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 503 (589)
Q Consensus 434 ~~~l~v~l~~~~~~~-d~~-~-----ia~~al~~a--~l~~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVD 503 (589)
.+++.+.. ..... ... . .+.+.++.+ ++... +..+-..||||+||+.|||+|+. +|+++|| |
T Consensus 110 ~enl~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~-----~p~lllL-D 181 (271)
T 2ixe_A 110 RENIAYGL--TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR-----KPRLLIL-D 181 (271)
T ss_dssp HHHHHTTC--SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT-----CCSEEEE-E
T ss_pred HHHHhhhc--ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc-----CCCEEEE-E
Confidence 22222211 11111 110 0 112334443 33333 23334559999999999999995 9999998 9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 504 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 504 EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
|||+|||+..+.. +.+.|..+... .+.++|++|+ |. ..... .--|.++..|+-+
T Consensus 182 EPts~LD~~~~~~-i~~~l~~~~~~---~g~tviivtH-d~---------~~~~~-~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 182 NATSALDAGNQLR-VQRLLYESPEW---ASRTVLLITQ-QL---------SLAER-AHHILFLKEGSVC 235 (271)
T ss_dssp STTTTCCHHHHHH-HHHHHHHCTTT---TTSEEEEECS-CH---------HHHTT-CSEEEEEETTEEE
T ss_pred CCccCCCHHHHHH-HHHHHHHHHhh---cCCEEEEEeC-CH---------HHHHh-CCEEEEEECCEEE
Confidence 9999999998754 33666655432 3678888887 32 11111 3356777777654
No 47
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.87 E-value=6.6e-23 Score=205.66 Aligned_cols=177 Identities=17% Similarity=0.186 Sum_probs=128.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 433 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~----- 433 (589)
..+|++++|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|...+
T Consensus 15 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv 92 (243)
T 1mv5_A 15 EQILRDISFEAQPNS--IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTI 92 (243)
T ss_dssp SCSEEEEEEEECTTE--EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEH
T ss_pred CceEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccH
Confidence 358999999999999 99999999999999999999999999999999997752 37888886533
Q ss_pred hhccccceeccCCCCCHHHHHHHHHHHhcccCCCcc------------ccccCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 434 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVV------------LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 434 ~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~v------------liDTSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
.+++.+.. . .... ...+.++++.+++.++-.. .-..||||+||+.|||+|+. +|+++||
T Consensus 93 ~enl~~~~--~-~~~~-~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~-----~p~lllL 163 (243)
T 1mv5_A 93 RENLTYGL--E-GDYT-DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR-----NPKILML 163 (243)
T ss_dssp HHHTTSCT--T-SCSC-HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH-----CCSEEEE
T ss_pred HHHHhhhc--c-CCCC-HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc-----CCCEEEE
Confidence 22222110 1 1122 2345667777766543222 12459999999999999995 9999998
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||||+|||+..+.. +.+.|..+. . +.+.|++|+ |.- .... .--|.++..|+-+.
T Consensus 164 -DEPts~LD~~~~~~-i~~~l~~~~-~----~~tvi~vtH-~~~---------~~~~-~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 164 -DEATASLDSESESM-VQKALDSLM-K----GRTTLVIAH-RLS---------TIVD-ADKIYFIEKGQITG 217 (243)
T ss_dssp -ECCSCSSCSSSCCH-HHHHHHHHH-T----TSEEEEECC-SHH---------HHHH-CSEEEEEETTEECC
T ss_pred -ECCcccCCHHHHHH-HHHHHHHhc-C----CCEEEEEeC-ChH---------HHHh-CCEEEEEECCEEEE
Confidence 99999999987644 446676664 2 677888887 321 1112 34678888887653
No 48
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.87 E-value=1.3e-22 Score=206.52 Aligned_cols=160 Identities=19% Similarity=0.129 Sum_probs=117.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHh--HhhCCcEEEEcccccC----------ccchhhhhHhhhhc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF----------RSGAVEQLRTHARR 436 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl--l~~~~GkV~l~~~Dt~----------RigaveQL~~~~~~ 436 (589)
.+|++|+|++++|+ +++|+||||||||||+++|+|+ +.|+.|+|.+.+.++. ++++++|...+...
T Consensus 34 ~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 34 AILRGLSLDVHPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 58999999999999 9999999999999999999998 4688999999998752 16677775432221
Q ss_pred c------ccce--ec--cCC-CCC---HHHHHHHHHHHhccc-CCCcccc-c-cCccccccHHHHHHHHhhhhhcCCCEE
Q 007789 437 L------QVPI--FE--KGY-EKD---PAIVAKEAIQEATRN-GSDVVLV-D-TAGRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 437 l------~v~l--~~--~~~-~~d---~~~ia~~al~~a~l~-~~d~vli-D-TSGg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
+ .... .. .+. ... ....+.++++.+++. .+....+ . .||||+||+.||++|+. +|+++
T Consensus 112 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~-----~p~lL 186 (267)
T 2zu0_C 112 VSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL-----EPELC 186 (267)
T ss_dssp CBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHH-----CCSEE
T ss_pred ccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHh-----CCCEE
Confidence 1 1110 00 010 111 124567788888875 3434444 3 79999999999999995 99999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|| ||||+|||+..+... .+.|..+.. .+.+.|++|+
T Consensus 187 lL-DEPts~LD~~~~~~l-~~~l~~l~~----~g~tviivtH 222 (267)
T 2zu0_C 187 IL-DESDSGLDIDALKVV-ADGVNSLRD----GKRSFIIVTH 222 (267)
T ss_dssp EE-ESTTTTCCHHHHHHH-HHHHHTTCC----SSCEEEEECS
T ss_pred EE-eCCCCCCCHHHHHHH-HHHHHHHHh----cCCEEEEEee
Confidence 99 999999999987533 356655532 2678888887
No 49
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.86 E-value=1.7e-22 Score=209.80 Aligned_cols=175 Identities=19% Similarity=0.191 Sum_probs=124.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++|+|++++|+ +++||||||||||||+++|+|++.|+.|+|.+.|.|+. ++|+++|...+ .
T Consensus 68 ~vL~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~ 145 (306)
T 3nh6_A 68 ETLQDVSFTVMPGQ--TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIA 145 (306)
T ss_dssp EEEEEEEEEECTTC--EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHH
T ss_pred ceeeeeeEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHH
Confidence 58999999999999 99999999999999999999999999999999999873 37888886533 2
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCc----cccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDV----VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~----vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.+.. . .... ..+.++++.+++. +++. .....||||+||++|||+|.. +|+++||
T Consensus 146 eNi~~~~--~--~~~~-~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~-----~p~iLlL- 214 (306)
T 3nh6_A 146 DNIRYGR--V--TAGN-DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK-----APGIILL- 214 (306)
T ss_dssp HHHHTTS--T--TCCH-HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH-----CCSEEEE-
T ss_pred HHHHhhc--c--cCCH-HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh-----CCCEEEE-
Confidence 2222111 1 1112 2233444443332 1221 123459999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||||++||+......+ +.|..+.. +.+.|++|+ |. +.+.. .-.|.++..|+-+.
T Consensus 215 DEPts~LD~~~~~~i~-~~l~~l~~-----~~Tvi~itH-~l---------~~~~~-aD~i~vl~~G~iv~ 268 (306)
T 3nh6_A 215 DEATSALDTSNERAIQ-ASLAKVCA-----NRTTIVVAH-RL---------STVVN-ADQILVIKDGCIVE 268 (306)
T ss_dssp ECCSSCCCHHHHHHHH-HHHHHHHT-----TSEEEEECC-SH---------HHHHT-CSEEEEEETTEEEE
T ss_pred ECCcccCCHHHHHHHH-HHHHHHcC-----CCEEEEEEc-Ch---------HHHHc-CCEEEEEECCEEEE
Confidence 9999999999875444 67776653 457788876 32 11122 44677777777653
No 50
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.85 E-value=5.6e-22 Score=201.12 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=112.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++++|++++|+ +++|+||||||||||+++|+|++++ .|+|.+.+.++. ++|+++|...+ .
T Consensus 34 ~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 110 (260)
T 2ghi_A 34 RTLKSINFFIPSGT--TCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110 (260)
T ss_dssp CSEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred ceeEeeEEEECCCC--EEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHH
Confidence 48999999999999 9999999999999999999999987 899999998762 37888886533 2
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcccCC------------CccccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS------------DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~------------d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.+.. ..... ..+.++++.+++..+ +......||||+||+.||++|+. +|+++||
T Consensus 111 enl~~~~----~~~~~-~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~-----~p~lllL- 179 (260)
T 2ghi_A 111 YNILYGK----LDATD-EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK-----DPKIVIF- 179 (260)
T ss_dssp HHHHTTC----TTCCH-HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH-----CCSEEEE-
T ss_pred HHHhccC----CCCCH-HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 2222111 11222 233445554433211 11233559999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+..+. .+.+.|..+.. +.+.|++|+
T Consensus 180 DEPts~LD~~~~~-~i~~~l~~l~~-----~~tviivtH 212 (260)
T 2ghi_A 180 DEATSSLDSKTEY-LFQKAVEDLRK-----NRTLIIIAH 212 (260)
T ss_dssp ECCCCTTCHHHHH-HHHHHHHHHTT-----TSEEEEECS
T ss_pred ECccccCCHHHHH-HHHHHHHHhcC-----CCEEEEEcC
Confidence 9999999999864 44467776642 567788887
No 51
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.85 E-value=6.4e-22 Score=196.92 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=114.7
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhh-----hhcccccee
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIF 442 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~-----~~~l~v~l~ 442 (589)
..+|++++|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.+ ++++++|...+ .+++.+..
T Consensus 21 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----~i~~v~q~~~~~~~tv~enl~~~~- 93 (229)
T 2pze_A 21 TPVLKDINFKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQFSWIMPGTIKENIIFGV- 93 (229)
T ss_dssp CCSEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----CEEEECSSCCCCSBCHHHHHHTTS-
T ss_pred ceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----EEEEEecCCcccCCCHHHHhhccC-
Confidence 358999999999999 9999999999999999999999999999999987 68888886533 22222111
Q ss_pred ccCCCCCHHHHHHHHHHHhcccC----C---C-----ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 443 EKGYEKDPAIVAKEAIQEATRNG----S---D-----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 443 ~~~~~~d~~~ia~~al~~a~l~~----~---d-----~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
.... ....++++.+++.. + + ......||||+||+.||++|+. +|+++|| ||||+|||
T Consensus 94 ----~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~-----~p~lllL-DEPts~LD 162 (229)
T 2pze_A 94 ----SYDE-YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK-----DADLYLL-DSPFGYLD 162 (229)
T ss_dssp ----CCCH-HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS-----CCSEEEE-ESTTTTSC
T ss_pred ----CcCh-HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc-----CCCEEEE-ECcccCCC
Confidence 1111 11222333222110 0 0 1123459999999999999994 9999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
+..+...+ + .+..... .+.+.|++|+ |.- .... .--|.++..|+-+
T Consensus 163 ~~~~~~i~-~---~l~~~~~-~~~tvi~vtH-~~~---------~~~~-~d~v~~l~~G~i~ 208 (229)
T 2pze_A 163 VLTEKEIF-E---SCVCKLM-ANKTRILVTS-KME---------HLKK-ADKILILHEGSSY 208 (229)
T ss_dssp HHHHHHHH-H---HCCCCCT-TTSEEEEECC-CHH---------HHHH-CSEEEEEETTEEE
T ss_pred HHHHHHHH-H---HHHHHhh-CCCEEEEEcC-ChH---------HHHh-CCEEEEEECCEEE
Confidence 98874322 2 1222222 2667788876 321 1111 3356777777654
No 52
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.84 E-value=7.5e-22 Score=197.49 Aligned_cols=156 Identities=19% Similarity=0.124 Sum_probs=107.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhh-----hhcccccee
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIF 442 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~-----~~~l~v~l~ 442 (589)
..+|++++|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.+ ++|+++|...+ .+++.+.
T Consensus 18 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~~~~~tv~enl~~~-- 89 (237)
T 2cbz_A 18 PPTLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----SVAYVPQQAWIQNDSLRENILFG-- 89 (237)
T ss_dssp CCSEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----CEEEECSSCCCCSEEHHHHHHTT--
T ss_pred CceeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----EEEEEcCCCcCCCcCHHHHhhCc--
Confidence 358999999999999 9999999999999999999999999999999987 58888886432 2222211
Q ss_pred ccCCCCCHHHHHHHHH---HHhcccC------CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH
Q 007789 443 EKGYEKDPAIVAKEAI---QEATRNG------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 513 (589)
Q Consensus 443 ~~~~~~d~~~ia~~al---~~a~l~~------~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 513 (589)
. ....+....+.+++ +.++... .+..+...||||+||+.|||+|+. +|+++|| ||||+|||+..
T Consensus 90 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~-----~p~lllL-DEPts~LD~~~ 162 (237)
T 2cbz_A 90 C-QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS-----NADIYLF-DDPLSAVDAHV 162 (237)
T ss_dssp S-CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH-----CCSEEEE-ESTTTTSCHHH
T ss_pred c-ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-eCcccccCHHH
Confidence 1 11122222222221 1121111 123344569999999999999995 9999998 99999999987
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+...+ +.+..+... . .+.+.|++|+
T Consensus 163 ~~~i~-~~l~~~~~~-~-~~~tviivtH 187 (237)
T 2cbz_A 163 GKHIF-ENVIGPKGM-L-KNKTRILVTH 187 (237)
T ss_dssp HHHHH-HHTTSTTST-T-TTSEEEEECS
T ss_pred HHHHH-HHHHHHHhh-c-CCCEEEEEec
Confidence 74333 333111111 1 2678888887
No 53
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=6.4e-22 Score=211.74 Aligned_cols=153 Identities=16% Similarity=0.054 Sum_probs=115.6
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhhh----
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 434 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~~---- 434 (589)
..+|++|+|++++|+ +++|+|||||||||||++|+|++. +.|+|.+.+.|+. ++|+++|...+.
T Consensus 34 ~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv 110 (390)
T 3gd7_A 34 NAILENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTF 110 (390)
T ss_dssp CCSEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEH
T ss_pred eEEeeceeEEEcCCC--EEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCH
Confidence 458999999999999 999999999999999999999998 8999999998863 378888865332
Q ss_pred -hccccceeccCCCCCHHHHHHHHHHHhcccCCCc-cccc-----------cCccccccHHHHHHHHhhhhhcCCCEEEE
Q 007789 435 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDV-VLVD-----------TAGRMQDNEPLMRALSKLIYLNNPDLVLF 501 (589)
Q Consensus 435 -~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~-vliD-----------TSGg~qqr~~LaraL~kl~~~~~PdlILL 501 (589)
+++. + +.......+.++++.+++.++.. .+-. .||||+||++|||+|+. +|+++||
T Consensus 111 ~enl~--~----~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~-----~P~lLLL 179 (390)
T 3gd7_A 111 RKNLD--P----NAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS-----KAKILLL 179 (390)
T ss_dssp HHHHC--T----TCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT-----TCCEEEE
T ss_pred HHHhh--h----ccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc-----CCCEEEE
Confidence 2221 1 11222345567777776654322 2222 69999999999999995 9999998
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 502 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 502 VDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||++||+..+... .+.|..+. .+.+.|++|+
T Consensus 180 -DEPts~LD~~~~~~l-~~~l~~~~-----~~~tvi~vtH 212 (390)
T 3gd7_A 180 -DEPSAHLDPVTYQII-RRTLKQAF-----ADCTVILCEA 212 (390)
T ss_dssp -ESHHHHSCHHHHHHH-HHHHHTTT-----TTSCEEEECS
T ss_pred -eCCccCCCHHHHHHH-HHHHHHHh-----CCCEEEEEEc
Confidence 999999999876533 35554432 2577888887
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.82 E-value=4.4e-21 Score=197.72 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=113.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhh-----hccccceec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA-----RRLQVPIFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~-----~~l~v~l~~ 443 (589)
.+|++++|++++|+ +++|+||||||||||+++|+|+++|+.|+|.+.+ ++|+++|...+. +++.
T Consensus 52 ~vl~~isl~i~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~l~~~tv~enl~----- 120 (290)
T 2bbs_A 52 PVLKDINFKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQNSWIMPGTIKENII----- 120 (290)
T ss_dssp CSEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----CEEEECSSCCCCSSBHHHHHH-----
T ss_pred eEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----EEEEEeCCCccCcccHHHHhh-----
Confidence 58999999999999 9999999999999999999999999999999977 688888864332 2221
Q ss_pred cCCCCCHHHHHHHHHHHhcccC----CC--------ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 444 KGYEKDPAIVAKEAIQEATRNG----SD--------VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 444 ~~~~~d~~~ia~~al~~a~l~~----~d--------~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+..... ....++++.+++.. +. ......||||+||+.||++|+. +|+++|| ||||+|||+
T Consensus 121 -~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~-----~p~lllL-DEPts~LD~ 192 (290)
T 2bbs_A 121 -GVSYDE-YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK-----DADLYLL-DSPFGYLDV 192 (290)
T ss_dssp -TTCCCH-HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS-----CCSEEEE-ESTTTTCCH
T ss_pred -Ccccch-HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHC-----CCCEEEE-ECCcccCCH
Confidence 111111 11222333222211 10 1123459999999999999995 9999998 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
..+...+ + .+..... .+.+.|++|+ |.- . + .. .--|.++..|+-+
T Consensus 193 ~~~~~i~-~---~ll~~~~-~~~tviivtH-d~~-----~-~---~~-~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 193 LTEKEIF-E---SCVCKLM-ANKTRILVTS-KME-----H-L---KK-ADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHH-H---HCCCCCT-TTSEEEEECC-CHH-----H-H---HH-SSEEEEEETTEEE
T ss_pred HHHHHHH-H---HHHHHhh-CCCEEEEEec-CHH-----H-H---Hc-CCEEEEEECCeEE
Confidence 8874332 2 1222222 2678888876 321 1 1 11 3356777777654
No 55
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.81 E-value=1.9e-20 Score=209.68 Aligned_cols=175 Identities=19% Similarity=0.178 Sum_probs=125.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ +++|+|||||||||+++.|+|++.|++|+|.+.|.|+. ++|+++|...+ .
T Consensus 357 ~~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 434 (582)
T 3b5x_A 357 PALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434 (582)
T ss_pred cccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHH
Confidence 48999999999999 99999999999999999999999999999999998762 48899886543 2
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcccC--------CCcc----ccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--------SDVV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~--------~d~v----liDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.. ... ...+ .+.+.++++.+++.+ ++.. ....||||+||++|||+|.+ +|+++||
T Consensus 435 eni~~--~~~-~~~~-~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~-----~p~illl- 504 (582)
T 3b5x_A 435 NNIAY--AAE-GEYT-REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR-----DAPVLIL- 504 (582)
T ss_pred HHHhc--cCC-CCCC-HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 33222 110 1112 234556666655432 2221 23459999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||||++||+..... +.+.+..+.+ +.+.|++|+ |.. ... ..--|.++..|+-+
T Consensus 505 DEpts~LD~~~~~~-i~~~l~~~~~-----~~tvi~itH-~~~---------~~~-~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 505 DEATSALDTESERA-IQAALDELQK-----NKTVLVIAH-RLS---------TIE-QADEILVVDEGEII 557 (582)
T ss_pred ECccccCCHHHHHH-HHHHHHHHcC-----CCEEEEEec-CHH---------HHH-hCCEEEEEECCEEE
Confidence 99999999998754 4466666542 667888887 221 111 13356777777654
No 56
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.81 E-value=2.5e-20 Score=209.25 Aligned_cols=157 Identities=22% Similarity=0.237 Sum_probs=117.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++++|++++|+ +++|+|||||||||+++.|+|++.|++|+|.+.|.|+. ++|+++|...+ .
T Consensus 358 ~vl~~isl~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 435 (595)
T 2yl4_A 358 PIFQDFSLSIPSGS--VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIA 435 (595)
T ss_dssp EEEEEEEEEECTTC--EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHH
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHH
Confidence 37999999999999 99999999999999999999999999999999998863 37888886533 2
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++... ...+.....+.+.++++.+++. +++..+ ...||||+||++|||+|.+ +|+++||
T Consensus 436 eni~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~-----~p~illl- 507 (595)
T 2yl4_A 436 ENIAYG--ADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK-----NPKILLL- 507 (595)
T ss_dssp HHHHTT--SSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH-----CCSEEEE-
T ss_pred HHHhhc--CCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 332221 1111111234456667666542 223222 4559999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||++||+.... .+.+.+.++.. +.+.|++|+
T Consensus 508 DEpts~LD~~~~~-~i~~~l~~~~~-----~~tvi~itH 540 (595)
T 2yl4_A 508 DEATSALDAENEY-LVQEALDRLMD-----GRTVLVIAH 540 (595)
T ss_dssp ECCCSSCCHHHHH-HHHHHHHHHHT-----TSEEEEECC
T ss_pred ECcccCCCHHHHH-HHHHHHHHHhc-----CCEEEEEec
Confidence 9999999999764 44477776653 467788887
No 57
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.80 E-value=2e-20 Score=209.50 Aligned_cols=155 Identities=20% Similarity=0.208 Sum_probs=116.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ +++|+|||||||||+++.|+|++.|++|+|.+.|.|+. ++|+++|...+ .
T Consensus 357 ~~l~~v~~~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 434 (582)
T 3b60_A 357 PALRNINLKIPAGK--TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA 434 (582)
T ss_dssp CSEEEEEEEECTTC--EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHH
T ss_pred ccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHH
Confidence 47999999999999 99999999999999999999999999999999998863 37888886533 2
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcccC--------CCc----cccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--------SDV----VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~--------~d~----vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++... .. ...+ .+.+.++++.+++.+ ++. .....||||+||++|||+|.+ +|+++||
T Consensus 435 eni~~~--~~-~~~~-~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~-----~p~illl- 504 (582)
T 3b60_A 435 NNIAYA--RT-EEYS-REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR-----DSPILIL- 504 (582)
T ss_dssp HHHHTT--TT-SCCC-HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH-----CCSEEEE-
T ss_pred HHHhcc--CC-CCCC-HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh-----CCCEEEE-
Confidence 222211 10 1122 234456666554422 221 123459999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||++||+..+.. +.+.+..+.+ +.+.|++|+
T Consensus 505 DEpts~LD~~~~~~-i~~~l~~~~~-----~~tvi~itH 537 (582)
T 3b60_A 505 DEATSALDTESERA-IQAALDELQK-----NRTSLVIAH 537 (582)
T ss_dssp ETTTSSCCHHHHHH-HHHHHHHHHT-----TSEEEEECS
T ss_pred ECccccCCHHHHHH-HHHHHHHHhC-----CCEEEEEec
Confidence 99999999998754 4477776653 567888887
No 58
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.80 E-value=1.8e-20 Score=209.89 Aligned_cols=174 Identities=19% Similarity=0.266 Sum_probs=123.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ +++|+|||||||||+++.|+|++.|++|+|.+.|.|+. ++|+++|...+ .
T Consensus 355 ~~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 432 (578)
T 4a82_A 355 PILKDINLSIEKGE--TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVK 432 (578)
T ss_dssp CSEEEEEEEECTTC--EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHH
T ss_pred cceeeeEEEECCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHH
Confidence 47999999999999 99999999999999999999999999999999998873 37888886533 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++... . ..... +.+.++++.+++. +++..+ ...||||+||++|||+|.+ +|+++||
T Consensus 433 eni~~~---~-~~~~~-~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~-----~p~illl- 501 (578)
T 4a82_A 433 ENILLG---R-PTATD-EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN-----NPPILIL- 501 (578)
T ss_dssp HHHGGG---C-SSCCH-HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH-----CCSEEEE-
T ss_pred HHHhcC---C-CCCCH-HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 332211 1 11222 2334455444332 222221 3459999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v 572 (589)
||||++||+.... .+.+.+..+.. +.+.+++|+ |.. . . ...--|..+..|+-+
T Consensus 502 DEpts~LD~~~~~-~i~~~l~~~~~-----~~t~i~itH-~l~-----~----~-~~~d~i~~l~~G~i~ 554 (578)
T 4a82_A 502 DEATSALDLESES-IIQEALDVLSK-----DRTTLIVAH-RLS-----T----I-THADKIVVIENGHIV 554 (578)
T ss_dssp ESTTTTCCHHHHH-HHHHHHHHHTT-----TSEEEEECS-SGG-----G----T-TTCSEEEEEETTEEE
T ss_pred ECccccCCHHHHH-HHHHHHHHHcC-----CCEEEEEec-CHH-----H----H-HcCCEEEEEECCEEE
Confidence 9999999998764 44467766643 457788877 321 0 0 113456777777655
No 59
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=4.5e-20 Score=207.06 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=123.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++++|++++|+ +++|||||||||||+++.|+|++.|++|+|.+.|.|+. ++|+++|...+ .
T Consensus 357 ~~l~~isl~i~~Ge--~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~ 434 (587)
T 3qf4_A 357 PVLSGVNFSVKPGS--LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIK 434 (587)
T ss_dssp CSEEEEEEEECTTC--EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred cceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHH
Confidence 48999999999999 99999999999999999999999999999999999873 37888886533 2
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCc----cccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDV----VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~----vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++... . ...+. +...++++.+++. +++. .....||||+||++|||+|.+ +|+++||
T Consensus 435 eni~~~--~--~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~-----~p~illl- 503 (587)
T 3qf4_A 435 ENLKWG--R--EDATD-DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK-----KPKVLIL- 503 (587)
T ss_dssp HHHTTT--C--SSCCH-HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT-----CCSEEEE-
T ss_pred HHHhcc--C--CCCCH-HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 222211 1 11122 2223344333221 2222 223459999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||||++||+......+ +.+..+.. +.|.|++|+ |.. ... ..--|..+..|+-++
T Consensus 504 DEpts~LD~~~~~~i~-~~l~~~~~-----~~tvi~itH-~l~---------~~~-~~d~i~vl~~G~i~~ 557 (587)
T 3qf4_A 504 DDCTSSVDPITEKRIL-DGLKRYTK-----GCTTFIITQ-KIP---------TAL-LADKILVLHEGKVAG 557 (587)
T ss_dssp ESCCTTSCHHHHHHHH-HHHHHHST-----TCEEEEEES-CHH---------HHT-TSSEEEEEETTEEEE
T ss_pred ECCcccCCHHHHHHHH-HHHHHhCC-----CCEEEEEec-ChH---------HHH-hCCEEEEEECCEEEE
Confidence 9999999999875444 66666532 678888887 221 111 234577777776653
No 60
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=2.3e-20 Score=209.74 Aligned_cols=175 Identities=19% Similarity=0.211 Sum_probs=124.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++++++++|+ +++|+|||||||||+++.|+|++.|+.|+|.+.|.|+. ++|+++|...+ .
T Consensus 369 ~~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~ 446 (598)
T 3qf4_B 369 PVLKDITFHIKPGQ--KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVK 446 (598)
T ss_dssp CSCCSEEEECCTTC--EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHH
T ss_pred ccccceEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHH
Confidence 47999999999999 99999999999999999999999999999999998873 37888886533 2
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++. +...... . +.+.++++.+++. +++..+ ...||||+||++|||+|.+ +|+++||
T Consensus 447 eni~--~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~-----~p~illl- 515 (598)
T 3qf4_B 447 ENLK--YGNPGAT--D-EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA-----NPKILIL- 515 (598)
T ss_dssp HHHH--SSSTTCC--T-THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT-----CCSEEEE-
T ss_pred HHHh--cCCCCCC--H-HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 2221 1111111 1 1223343333221 122111 3459999999999999995 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||||++||+......+ +.+..+.. +.+.|++|+ |.. . .. ..--|..+..|+-++
T Consensus 516 DEpts~LD~~~~~~i~-~~l~~~~~-----~~t~i~itH-~l~-----~----~~-~~d~i~~l~~G~i~~ 569 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQ-AAMWKLME-----GKTSIIIAH-RLN-----T----IK-NADLIIVLRDGEIVE 569 (598)
T ss_dssp CCCCTTCCHHHHHHHH-HHHHHHHT-----TSEEEEESC-CTT-----H----HH-HCSEEEEECSSSEEE
T ss_pred ECCccCCCHHHHHHHH-HHHHHHcC-----CCEEEEEec-CHH-----H----HH-cCCEEEEEECCEEEE
Confidence 9999999999875444 67766642 678888887 321 1 11 245677888887653
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.78 E-value=8.4e-20 Score=202.92 Aligned_cols=154 Identities=13% Similarity=0.056 Sum_probs=110.9
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHh------hhhccccceecc
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT------HARRLQVPIFEK 444 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~------~~~~l~v~l~~~ 444 (589)
|..+++++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+. ++++++|... ..+++.. ...
T Consensus 284 l~~~~~~i~~Ge--i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~i~~~~q~~~~~~~~tv~~~l~~--~~~ 356 (538)
T 3ozx_A 284 LVVDNGEAKEGE--IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ---ILSYKPQRIFPNYDGTVQQYLEN--ASK 356 (538)
T ss_dssp EEECCEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---CEEEECSSCCCCCSSBHHHHHHH--HCS
T ss_pred EEeccceECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---eeEeechhcccccCCCHHHHHHH--hhh
Confidence 445567788999 99999999999999999999999999999987654 3555555321 1111111 111
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHH
Q 007789 445 GYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 523 (589)
Q Consensus 445 ~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~ 523 (589)
.+.......+.++++.+++..+....+.+ ||||+||+.||++|+. +|+++|| ||||+|||+..+...+ +.|.
T Consensus 357 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~-----~p~lLlL-DEPT~gLD~~~~~~i~-~~l~ 429 (538)
T 3ozx_A 357 DALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAK-----EADLYVL-DQPSSYLDVEERYIVA-KAIK 429 (538)
T ss_dssp STTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHS-----CCSEEEE-ESTTTTCCHHHHHHHH-HHHH
T ss_pred hccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-eCCccCCCHHHHHHHH-HHHH
Confidence 11111223456677777776655555555 9999999999999995 9999998 9999999999875444 7777
Q ss_pred HhhcCCCCCCccEEEEcc
Q 007789 524 DLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 524 ~l~~~~~~~~it~IIlTK 541 (589)
++.... +.+++++|+
T Consensus 430 ~l~~~~---g~tvi~vsH 444 (538)
T 3ozx_A 430 RVTRER---KAVTFIIDH 444 (538)
T ss_dssp HHHHHT---TCEEEEECS
T ss_pred HHHHhC---CCEEEEEeC
Confidence 776432 677788876
No 62
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=8.4e-20 Score=205.55 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=112.6
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccc-eeccC-C-C
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP-IFEKG-Y-E 447 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~-l~~~~-~-~ 447 (589)
|+.+++++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+ ..++|+++|.......+.+. +.... . .
T Consensus 372 l~~~~~~v~~Ge--i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 445 (607)
T 3bk7_A 372 LEVEPGEIRKGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK 445 (607)
T ss_dssp EEECCEEEETTC--EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH
T ss_pred EEecccccCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE----eeEEEEEecCccCCCCCcHHHHHHhhhccC
Confidence 455566678999 99999999999999999999999999999976 24688888864321111111 00000 0 0
Q ss_pred CCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhh
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 526 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~ 526 (589)
......+.++++.+++.++....+.+ ||||+||+.||++|+. +|+++|| ||||+|||+..+...+ +.|..+.
T Consensus 446 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~-----~p~lLlL-DEPt~~LD~~~~~~l~-~~l~~l~ 518 (607)
T 3bk7_A 446 LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR-----DADIYLL-DEPSAYLDVEQRLAVS-RAIRHLM 518 (607)
T ss_dssp HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTS-----CCSEEEE-ECTTTTCCHHHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh-----CCCEEEE-eCCccCCCHHHHHHHH-HHHHHHH
Confidence 00124566778888877655555554 9999999999999995 9999998 9999999999875544 7777775
Q ss_pred cCCCCCCccEEEEcc
Q 007789 527 SSPNPQLIDGILLTK 541 (589)
Q Consensus 527 ~~~~~~~it~IIlTK 541 (589)
... +.+.|++|+
T Consensus 519 ~~~---g~tvi~vsH 530 (607)
T 3bk7_A 519 EKN---EKTALVVEH 530 (607)
T ss_dssp HHT---TCEEEEECS
T ss_pred HhC---CCEEEEEeC
Confidence 322 677788877
No 63
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.76 E-value=9.7e-20 Score=202.47 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=110.2
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccc-eeccC--CC
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP-IFEKG--YE 447 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~-l~~~~--~~ 447 (589)
|..++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+ ..++|+++|.......+.+. +.... ..
T Consensus 302 l~~~~~~i~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~ 375 (538)
T 1yqt_A 302 LEVEPGEIKKGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW----DLTVAYKPQYIKADYEGTVYELLSKIDASK 375 (538)
T ss_dssp EEECCEEEETTC--EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH
T ss_pred EEeCccccCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE----CceEEEEecCCcCCCCCcHHHHHHhhhccC
Confidence 555666778999 99999999999999999999999999999986 23688888865331111111 00000 00
Q ss_pred CCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhh
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 526 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~ 526 (589)
......+.++++.+++.......+. .|||++||+.||++|+. +|+++|| ||||+|||+..+...+ +.|.++.
T Consensus 376 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~-----~p~lLlL-DEPt~~LD~~~~~~i~-~~l~~l~ 448 (538)
T 1yqt_A 376 LNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR-----DADIYLL-DEPSAYLDVEQRLAVS-RAIRHLM 448 (538)
T ss_dssp HTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTS-----CCSEEEE-ECTTTTCCHHHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh-----CCCEEEE-eCCcccCCHHHHHHHH-HHHHHHH
Confidence 0112345566666666544344454 49999999999999995 9999998 9999999999875544 7777765
Q ss_pred cCCCCCCccEEEEcc
Q 007789 527 SSPNPQLIDGILLTK 541 (589)
Q Consensus 527 ~~~~~~~it~IIlTK 541 (589)
.. .+.++|++|+
T Consensus 449 ~~---~g~tvi~vsH 460 (538)
T 1yqt_A 449 EK---NEKTALVVEH 460 (538)
T ss_dssp HH---HTCEEEEECS
T ss_pred Hh---CCCEEEEEeC
Confidence 32 1667788877
No 64
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.75 E-value=2.6e-19 Score=199.00 Aligned_cols=159 Identities=18% Similarity=0.125 Sum_probs=107.3
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEE---------EEccccc-----------Cccchhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV---------MMAACDT-----------FRSGAVE 428 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV---------~l~~~Dt-----------~Rigave 428 (589)
.+|.+++ .+.+|+ +++|+||||||||||+++|+|+++|+.|++ .+.+.++ .+++++.
T Consensus 36 ~~l~~vs-~i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 3788999 899999 999999999999999999999999999984 1222221 0122222
Q ss_pred hhHhhhhccc-cceeccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 429 QLRTHARRLQ-VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 429 QL~~~~~~l~-v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
|.......+. ..+.......+....+.++++.+++.......+.+ ||||+||+.||++|+ .+|+++|| ||||
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~-----~~P~lLlL-DEPT 186 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL-----RNATFYFF-DEPS 186 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH-----SCCSEEEE-ESTT
T ss_pred hhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCc
Confidence 2111000000 00000000000012356678888876654455554 999999999999999 49999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
++||+..+...+ +.|..+... +.+.|++|+
T Consensus 187 s~LD~~~~~~l~-~~L~~l~~~----g~tvi~vsH 216 (538)
T 1yqt_A 187 SYLDIRQRLNAA-RAIRRLSEE----GKSVLVVEH 216 (538)
T ss_dssp TTCCHHHHHHHH-HHHHHHHHT----TCEEEEECS
T ss_pred ccCCHHHHHHHH-HHHHHHHhc----CCEEEEEeC
Confidence 999999875554 777777642 678888887
No 65
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.74 E-value=5e-19 Score=199.28 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=107.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEE---------EEccccc-----------Cccchhh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV---------MMAACDT-----------FRSGAVE 428 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV---------~l~~~Dt-----------~Rigave 428 (589)
.+|.+++ .+.+|+ +++|+||||||||||++.|+|+++|+.|++ .+.+.++ .+++++.
T Consensus 106 ~~l~~vs-~i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 3788999 899999 999999999999999999999999999984 1222221 0112222
Q ss_pred hhHhhhhcc-ccceeccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 429 QLRTHARRL-QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 429 QL~~~~~~l-~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
|.......+ ...+.......+....+.++++.+++.......+.+ ||||+||+.||++|+. +|+++|| ||||
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~-----~P~lLlL-DEPT 256 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLR-----KAHFYFF-DEPS 256 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHS-----CCSEEEE-ECTT
T ss_pred chhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhc-----CCCEEEE-ECCc
Confidence 211000000 000000000001112356778888877654555554 9999999999999994 9999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
++||+..+...+ +.|..+... +.+.|++|+
T Consensus 257 s~LD~~~~~~l~-~~L~~l~~~----g~tvIivsH 286 (607)
T 3bk7_A 257 SYLDIRQRLKVA-RVIRRLANE----GKAVLVVEH 286 (607)
T ss_dssp TTCCHHHHHHHH-HHHHHHHHT----TCEEEEECS
T ss_pred ccCCHHHHHHHH-HHHHHHHhc----CCEEEEEec
Confidence 999999875444 777777642 678888887
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.8e-18 Score=194.75 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=110.2
Q ss_pred ccccccccccccC-----CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHh------hhhcc
Q 007789 369 DILRDVHAAKEQR-----KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT------HARRL 437 (589)
Q Consensus 369 ~iL~~Is~~i~~G-----ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~------~~~~l 437 (589)
.++++++|++..| + +++|+||||||||||++.|+|+++|++|+.. ...++++++|... ..+.+
T Consensus 361 ~~l~~vsl~v~~G~~~~GE--iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~----~~~~i~~~~q~~~~~~~~tv~e~~ 434 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSE--ILVMMGENGTGKTTLIKLLAGALKPDEGQDI----PKLNVSMKPQKIAPKFPGTVRQLF 434 (608)
T ss_dssp EECSSCEEEECCEECCTTC--EEEEESCTTSSHHHHHHHHHTSSCCSBCCCC----CSCCEEEECSSCCCCCCSBHHHHH
T ss_pred cccCceEEEEecCccccce--EEEEECCCCCcHHHHHHHHhcCCCCCCCcCc----cCCcEEEecccccccCCccHHHHH
Confidence 3678899988877 6 8999999999999999999999999998631 1124555655321 11111
Q ss_pred ccceeccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 438 QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 438 ~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
...+ ..... ....+.++++.+++.++....+.+ ||||+||+.||++|+. +|+++|| ||||+|||+..+..
T Consensus 435 ~~~~--~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~-----~p~lLlL-DEPT~gLD~~~~~~ 505 (608)
T 3j16_B 435 FKKI--RGQFL-NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI-----PADIYLI-DEPSAYLDSEQRII 505 (608)
T ss_dssp HHHC--SSTTT-SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTS-----CCSEEEE-CCTTTTCCHHHHHH
T ss_pred HHHh--hcccc-cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh-----CCCEEEE-ECCCCCCCHHHHHH
Confidence 1001 11111 224566788888887765555555 9999999999999994 9999998 99999999998754
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+ +.|.++... .+.+++++|+
T Consensus 506 i~-~ll~~l~~~---~g~tviivtH 526 (608)
T 3j16_B 506 CS-KVIRRFILH---NKKTAFIVEH 526 (608)
T ss_dssp HH-HHHHHHHHH---HTCEEEEECS
T ss_pred HH-HHHHHHHHh---CCCEEEEEeC
Confidence 44 677766432 2678888887
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.73 E-value=3.2e-18 Score=194.62 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=98.9
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHH---------------------HHHHHhHhhC-------CcEEEEcc
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL---------------------AKVAYWLLQH-------KVSVMMAA 418 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlL---------------------akLAgll~~~-------~GkV~l~~ 418 (589)
...+|++|+|++++|+ +++|+||||||||||+ +.++++..|+ .+.|.+.+
T Consensus 30 ~~~~L~~vsl~i~~Ge--~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGK--LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp CSTTCCSEEEEEETTS--EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred CccceeccEEEECCCC--EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 4568999999999999 9999999999999998 7888888887 45555655
Q ss_pred ccc-----CccchhhhhHhhhhcc-----------------------ccceeccC-CCCCHHH----H------HHHHHH
Q 007789 419 CDT-----FRSGAVEQLRTHARRL-----------------------QVPIFEKG-YEKDPAI----V------AKEAIQ 459 (589)
Q Consensus 419 ~Dt-----~RigaveQL~~~~~~l-----------------------~v~l~~~~-~~~d~~~----i------a~~al~ 459 (589)
.+. .++|++.|...+...+ ++.++... ....... . ...+++
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 443 2366776643322111 01111000 0000000 0 012355
Q ss_pred HhcccCC--CccccccCccccccHHHHHHHHhhhhhcCCC--EEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 007789 460 EATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 535 (589)
Q Consensus 460 ~a~l~~~--d~vliDTSGg~qqr~~LaraL~kl~~~~~Pd--lILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it 535 (589)
.+++... +..+-..||||+||+.|||+|+. +|+ ++|| ||||+|||+..+...+ +.|..+... +.+
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~-----~p~~~lLlL-DEPtsgLD~~~~~~l~-~~l~~l~~~----g~t 256 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS-----RLTGVLYVL-DEPSIGLHQRDNDRLI-ATLKSMRDL----GNT 256 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHT-----CCCSCEEEE-ECTTTTCCGGGHHHHH-HHHHHHHHT----TCE
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhh-----CCCCCEEEE-ECCccCCCHHHHHHHH-HHHHHHHHc----CCE
Confidence 5555432 33334459999999999999994 887 8888 9999999999875554 777777643 678
Q ss_pred EEEEcc
Q 007789 536 GILLTK 541 (589)
Q Consensus 536 ~IIlTK 541 (589)
.|++|+
T Consensus 257 vi~vtH 262 (670)
T 3ux8_A 257 LIVVEH 262 (670)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 888887
No 68
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.71 E-value=6.1e-18 Score=205.32 Aligned_cols=176 Identities=20% Similarity=0.235 Sum_probs=127.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++|||++++|+ .++|||++||||||+++.|.+++.|++|+|.|+|.|+. ++++|+|...+ .
T Consensus 1093 ~VL~~isl~I~~Ge--~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQ--TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIA 1170 (1321)
T ss_dssp CSEEEEEEEECTTC--EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred ccccceeEEECCCC--EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHH
Confidence 48999999999999 99999999999999999999999999999999999983 48889987643 4
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCccccc----cCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vliD----TSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+|+....-. ...+. +.+.++++.+++ .++|..+-+ .||||+||++|||||.+ +|+++||
T Consensus 1171 eNI~~gld~--~~~sd-~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr-----~~~ILiL- 1241 (1321)
T 4f4c_A 1171 ENIIYGLDP--SSVTM-AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR-----NPKILLL- 1241 (1321)
T ss_dssp HHHSSSSCT--TTSCH-HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS-----CCSEEEE-
T ss_pred HHHhccCCC--CCCCH-HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh-----CCCEEEE-
Confidence 443211101 11122 334556666543 345655533 49999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc-ccccccchhhhhHhHHHhCCCEEEEecCCCcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK-lD~~d~k~G~als~~~~~g~PI~fig~Gq~v~ 573 (589)
||||+++|+.... .+.+.|..+. .+.|.|++++ +.++. .---|..+-.|+-++
T Consensus 1242 DEaTSaLD~~tE~-~Iq~~l~~~~-----~~~TvI~IAHRLsTi~------------~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1242 DEATSALDTESEK-VVQEALDRAR-----EGRTCIVIAHRLNTVM------------NADCIAVVSNGTIIE 1295 (1321)
T ss_dssp ESCCCSTTSHHHH-HHHHHHTTTS-----SSSEEEEECSSSSTTT------------TCSEEEEESSSSEEE
T ss_pred eCccccCCHHHHH-HHHHHHHHHc-----CCCEEEEeccCHHHHH------------hCCEEEEEECCEEEE
Confidence 9999999998753 3335554332 2667888876 44331 122466677776553
No 69
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.9e-18 Score=190.49 Aligned_cols=156 Identities=19% Similarity=0.094 Sum_probs=102.4
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc-----cCccchhhhhH---hhhhccc----
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-----TFRSGAVEQLR---THARRLQ---- 438 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D-----t~RigaveQL~---~~~~~l~---- 438 (589)
|+.++ .+.+|+ +++|+||||||||||++.|+|+++|+.|+|...... .++ |...|.. .....+.
T Consensus 94 l~~l~-~~~~Ge--i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 169 (608)
T 3j16_B 94 LHRLP-TPRPGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFR-GSELQNYFTKMLEDDIKAIIK 169 (608)
T ss_dssp EECCC-CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTT-TSTHHHHHHHHHHTSCCCEEE
T ss_pred ecCCC-CCCCCC--EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheec-ChhhhhhhhHHHHHhhhhhhc
Confidence 44443 467899 999999999999999999999999999987311000 011 1111100 0001100
Q ss_pred ------ccee-----------ccCCCCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEE
Q 007789 439 ------VPIF-----------EKGYEKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVL 500 (589)
Q Consensus 439 ------v~l~-----------~~~~~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlIL 500 (589)
++.. ...........+.++++.+++.......+. .||||+||++||++|+. +|+++|
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~-----~p~lll 244 (608)
T 3j16_B 170 PQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ-----EADVYM 244 (608)
T ss_dssp CCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS-----CCSEEE
T ss_pred hhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh-----CCCEEE
Confidence 0000 000011122456778888887665444454 49999999999999994 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 501 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 501 LVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
| ||||+|||+..+...+ +.|..+... +.+.|++|+
T Consensus 245 l-DEPts~LD~~~~~~l~-~~l~~l~~~----g~tvi~vtH 279 (608)
T 3j16_B 245 F-DEPSSYLDVKQRLNAA-QIIRSLLAP----TKYVICVEH 279 (608)
T ss_dssp E-ECTTTTCCHHHHHHHH-HHHHGGGTT----TCEEEEECS
T ss_pred E-ECcccCCCHHHHHHHH-HHHHHHHhC----CCEEEEEeC
Confidence 8 9999999999875444 777777643 567788776
No 70
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.70 E-value=1.1e-17 Score=202.50 Aligned_cols=156 Identities=18% Similarity=0.194 Sum_probs=114.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++++|++++|+ +++|||||||||||+++.|+|++.|++|+|.+.|.|+. ++|+++|.+.+ .
T Consensus 1047 ~~l~~vsl~i~~Ge--~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 1124 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQ--TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124 (1284)
T ss_dssp CSBSSCCEEECSSS--EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHH
T ss_pred eeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHH
Confidence 48999999999999 99999999999999999999999999999999998873 38889887632 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhccc--------CCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l~--------~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++.... ....... ..+.++++.+++. +++..+ ...|||++||++|||+|.+ +|+++||
T Consensus 1125 eNi~~~~--~~~~~~~-~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~-----~p~iLiL- 1195 (1284)
T 3g5u_A 1125 ENIAYGD--NSRVVSY-EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR-----QPHILLL- 1195 (1284)
T ss_dssp HHHTCCC--SSCCCCH-HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH-----CCSSEEE-
T ss_pred HHHhccC--CCCCCCH-HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc-----CCCEEEE-
Confidence 3322211 1111122 2233344433221 233222 2359999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||+|||+.... .+.+.+..+.. +.+.|++|+
T Consensus 1196 DEpTs~lD~~~~~-~i~~~l~~~~~-----~~tvi~isH 1228 (1284)
T 3g5u_A 1196 DEATSALDTESEK-VVQEALDKARE-----GRTCIVIAH 1228 (1284)
T ss_dssp ESCSSSCCHHHHH-HHHHHHHHHSS-----SSCEEEECS
T ss_pred eCCcccCCHHHHH-HHHHHHHHhCC-----CCEEEEEec
Confidence 9999999998764 44466665432 678888887
No 71
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.70 E-value=3.3e-18 Score=190.16 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=96.9
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEE-----------EEcccccCc---------------cchhhhhHh
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV-----------MMAACDTFR---------------SGAVEQLRT 432 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV-----------~l~~~Dt~R---------------igaveQL~~ 432 (589)
.+|+ +++|+||||||||||+++|+|+++|+.|+| .+.+.++.. +.+++|...
T Consensus 23 ~~Ge--i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 23 KNNT--ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CTTE--EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 4788 999999999999999999999999999987 233332210 011111000
Q ss_pred hhhccccceeccCCCCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 433 HARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 433 ~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+. ...+.......+....+.++++.+++.......+. .||||+|++.||++|+. +|+++|| ||||++||+
T Consensus 101 ~~---~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~-----~p~illl-DEPts~LD~ 171 (538)
T 3ozx_A 101 FL---KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR-----EADVYIF-DQPSSYLDV 171 (538)
T ss_dssp TC---CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHS-----CCSEEEE-ESTTTTCCH
T ss_pred hc---cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc-----CCCEEEE-ECCcccCCH
Confidence 00 00000000000011234567777777655444554 59999999999999994 9999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+...+ +.|..+.. +.+.|++|+
T Consensus 172 ~~~~~l~-~~l~~l~~-----g~tii~vsH 195 (538)
T 3ozx_A 172 RERMNMA-KAIRELLK-----NKYVIVVDH 195 (538)
T ss_dssp HHHHHHH-HHHHHHCT-----TSEEEEECS
T ss_pred HHHHHHH-HHHHHHhC-----CCEEEEEEe
Confidence 9876554 77777742 577788776
No 72
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.69 E-value=6.5e-18 Score=204.57 Aligned_cols=154 Identities=21% Similarity=0.234 Sum_probs=113.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|++|+|++++|+ +++|||||||||||+++.|+|++.|++|+|.+.|.|+. ++|+|+|...+ .
T Consensus 404 ~vL~~isl~i~~G~--~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 481 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQ--TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA 481 (1284)
T ss_dssp CSEEEEEEEECTTC--EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHH
T ss_pred cceecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHH
Confidence 48999999999999 99999999999999999999999999999999998873 37888886533 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCcc----ccccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~v----liDTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++... . ...+. +.+.++++.+.. .+++.. ....||||+||++|||+|.+ +|+++||
T Consensus 482 eNi~~g--~--~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~-----~p~iliL- 550 (1284)
T 3g5u_A 482 ENIRYG--R--EDVTM-DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR-----NPKILLL- 550 (1284)
T ss_dssp HHHHHH--C--SSCCH-HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH-----CCSEEEE-
T ss_pred HHHhcC--C--CCCCH-HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc-----CCCEEEE-
Confidence 332211 1 11122 223333333322 122222 23459999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||++||+... ..+.+.+..+.. +.|.|++|+
T Consensus 551 DEpts~LD~~~~-~~i~~~l~~~~~-----~~t~i~itH 583 (1284)
T 3g5u_A 551 DEATSALDTESE-AVVQAALDKARE-----GRTTIVIAH 583 (1284)
T ss_dssp ESTTCSSCHHHH-HHHHHHHHHHHT-----TSEEEEECS
T ss_pred ECCCCCCCHHHH-HHHHHHHHHHcC-----CCEEEEEec
Confidence 999999999865 455566665542 567888876
No 73
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.69 E-value=1.5e-17 Score=201.95 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=118.4
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh-----h
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 434 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~-----~ 434 (589)
.+|+++||++++|+ .++||||+||||||+++.|.|++.|++|+|.+.|.|+. ++|+|.|...+ .
T Consensus 432 ~vL~~isl~i~~G~--~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~ 509 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQ--TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIE 509 (1321)
T ss_dssp CSEEEEEEEECTTC--EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred ceeeceEEeecCCc--EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchh
Confidence 47999999999999 99999999999999999999999999999999999873 38999997633 3
Q ss_pred hccccceeccCCCCCHHHHHHHHHHHhcc--------cCCCcccc----ccCccccccHHHHHHHHhhhhhcCCCEEEEE
Q 007789 435 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 435 ~~l~v~l~~~~~~~d~~~ia~~al~~a~l--------~~~d~vli----DTSGg~qqr~~LaraL~kl~~~~~PdlILLV 502 (589)
+++... . ...+. +.+.++++.+.+ .+++..+- ..||||+||++|||||.+ +|+++||
T Consensus 510 eNI~~g--~--~~~~~-~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~-----~~~IliL- 578 (1321)
T 4f4c_A 510 ENISLG--K--EGITR-EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR-----NPKILLL- 578 (1321)
T ss_dssp HHHHTT--C--TTCCH-HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT-----CCSEEEE-
T ss_pred HHHhhh--c--ccchH-HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc-----CCCEEEE-
Confidence 433211 1 11122 334555555432 34454443 349999999999999996 9999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
||||++||+... ..+.++|..+.. +.|.|++|+
T Consensus 579 DE~tSaLD~~te-~~i~~~l~~~~~-----~~T~iiiaH 611 (1321)
T 4f4c_A 579 DEATSALDAESE-GIVQQALDKAAK-----GRTTIIIAH 611 (1321)
T ss_dssp ESTTTTSCTTTH-HHHHHHHHHHHT-----TSEEEEECS
T ss_pred ecccccCCHHHH-HHHHHHHHHHhC-----CCEEEEEcc
Confidence 999999999864 566678877654 667888886
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.67 E-value=2.5e-17 Score=192.84 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=51.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhH
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR 431 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~ 431 (589)
.+|++++|.+..|+ +++|+||||||||||++.|+|+++|++|+|.+.+. .|+|++.|..
T Consensus 687 ~iL~dVSl~I~~Ge--ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--~~I~yv~Q~~ 745 (986)
T 2iw3_A 687 PQITDINFQCSLSS--RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--CRIAYIKQHA 745 (986)
T ss_dssp CSEEEEEEEEETTC--EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--CCEEEECHHH
T ss_pred eeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--cceEeeccch
Confidence 47899999999999 99999999999999999999999999999998752 3667766643
No 75
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.61 E-value=5.6e-16 Score=181.56 Aligned_cols=143 Identities=20% Similarity=0.164 Sum_probs=99.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc---cCccchhhhhH-------hhhhccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD---TFRSGAVEQLR-------THARRLQ 438 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D---t~RigaveQL~-------~~~~~l~ 438 (589)
.+|++++|++.+|+ +++|+||||||||||+++|+| |+| .+.+ ..++++++|.. +..+++.
T Consensus 449 ~iL~~vsl~I~~Ge--~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~ 518 (986)
T 2iw3_A 449 ILLNKTQLRLKRAR--RYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDIDGTHSDTSVLDFVF 518 (986)
T ss_dssp EEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCCCCCCTTSBHHHHHH
T ss_pred EeEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccccccccCCcHHHHHH
Confidence 47999999999999 999999999999999999995 222 1211 12445555531 1111111
Q ss_pred cceeccCCCCCHHHHHHHHHHHhccc-CC-CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHH
Q 007789 439 VPIFEKGYEKDPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 516 (589)
Q Consensus 439 v~l~~~~~~~d~~~ia~~al~~a~l~-~~-d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 516 (589)
. ..++. ...+.++++.+++. .+ +..+-..||||+||+.|+++|+. +|+++|| ||||+|||+..+..
T Consensus 519 ~----~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~-----~P~lLLL-DEPTs~LD~~~~~~ 586 (986)
T 2iw3_A 519 E----SGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLR-----NADILLL-DEPTNHLDTVNVAW 586 (986)
T ss_dssp T----TCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHT-----TCSEEEE-ESTTTTCCHHHHHH
T ss_pred H----hhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhc-----CCCEEEE-ECCccCCCHHHHHH
Confidence 1 11111 45567778887763 22 33334559999999999999994 9999998 99999999998753
Q ss_pred HHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 517 KFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 517 ~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+ +.|.. .+.+.|++|+
T Consensus 587 l~-~~L~~-------~g~tvIivSH 603 (986)
T 2iw3_A 587 LV-NYLNT-------CGITSITISH 603 (986)
T ss_dssp HH-HHHHH-------SCSEEEEECS
T ss_pred HH-HHHHh-------CCCEEEEEEC
Confidence 33 55543 2678888887
No 76
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.58 E-value=3.3e-15 Score=169.86 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=55.1
Q ss_pred HHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcCC---CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 455 KEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 455 ~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~P---dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
.+.+..+++.. .+..+-..||||+||+.|||+|+. +| +++|| ||||+|||+..+...+ +.|..+...
T Consensus 524 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~-----~p~~p~llll-DEPt~~LD~~~~~~i~-~~l~~l~~~- 595 (670)
T 3ux8_A 524 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR-----RSNGRTLYIL-DEPTTGLHVDDIARLL-DVLHRLVDN- 595 (670)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHS-----CCCSCEEEEE-ESTTTTCCHHHHHHHH-HHHHHHHHT-
T ss_pred HHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhh-----CCCCCcEEEE-eCCCCCCCHHHHHHHH-HHHHHHHHC-
Confidence 34555555532 123334559999999999999994 66 46666 9999999999875544 777777643
Q ss_pred CCCCccEEEEcc
Q 007789 530 NPQLIDGILLTK 541 (589)
Q Consensus 530 ~~~~it~IIlTK 541 (589)
+.++|++|+
T Consensus 596 ---g~tvi~vtH 604 (670)
T 3ux8_A 596 ---GDTVLVIEH 604 (670)
T ss_dssp ---TCEEEEECC
T ss_pred ---CCEEEEEeC
Confidence 678888887
No 77
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.57 E-value=6.5e-17 Score=174.18 Aligned_cols=135 Identities=11% Similarity=0.071 Sum_probs=94.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceec-cCCCCCHHHHHHHHHHHhcc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE-KGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~-~~~~~d~~~ia~~al~~a~l 463 (589)
+++|+||||||||||++.|+|++.|+.|+|.+.+.++.|.+++.|.. ....+.+ .. .+++.. ...+.++++.+++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv--~D~~g~~~~-~~~~~~~L~~~~L 146 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVF--WDLPGIGST-NFPPDTYLEKMKF 146 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEE--EECCCGGGS-SCCHHHHHHHTTG
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeee--hHhhcccch-HHHHHHHHHHcCC
Confidence 99999999999999999999999999999999888876667777753 1122211 10 011111 1235667777777
Q ss_pred cCCCccccccCcc--ccccHHHHHHHHhhh-----hhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhh
Q 007789 464 NGSDVVLVDTAGR--MQDNEPLMRALSKLI-----YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 526 (589)
Q Consensus 464 ~~~d~vliDTSGg--~qqr~~LaraL~kl~-----~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~ 526 (589)
.+++..++ .||| |+|++.|+++|.... -.++|+++++ ||||+|||+..+.+. .+.+..+.
T Consensus 147 ~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllL-DEPtsgLD~~~~~~l-~~~l~~l~ 213 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDIT-NEADGEPQTFDKEKV-LQDIRLNC 213 (413)
T ss_dssp GGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHH-HHHTTCCTTCCHHHH-HHHHHHHH
T ss_pred CccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCccccc-CcccccCCHHHHHHH-HHHHHHHH
Confidence 77776666 8888 999999999998511 1137888887 999999999876544 36666663
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.57 E-value=2e-16 Score=149.65 Aligned_cols=139 Identities=13% Similarity=0.100 Sum_probs=79.2
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHH
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI 452 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ 452 (589)
+|+|.+++|+ +++|+|||||||||+++++.+ |... ...|..| |.+.|.... ..+. +.....
T Consensus 1 ~vsl~i~~ge--i~~l~G~nGsGKSTl~~~~~~------~~~~-~~~d~~~-g~~~~~~~~------~~~~---~~~~~~ 61 (171)
T 4gp7_A 1 SMKLTIPELS--LVVLIGSSGSGKSTFAKKHFK------PTEV-ISSDFCR-GLMSDDEND------QTVT---GAAFDV 61 (171)
T ss_dssp CEEEEEESSE--EEEEECCTTSCHHHHHHHHSC------GGGE-EEHHHHH-HHHCSSTTC------GGGH---HHHHHH
T ss_pred CccccCCCCE--EEEEECCCCCCHHHHHHHHcc------CCeE-EccHHHH-HHhcCcccc------hhhH---HHHHHH
Confidence 5789999999 999999999999999997431 1111 1222222 333322100 0000 000000
Q ss_pred HHHHHHHHhcccCCCcc---ccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH---------------
Q 007789 453 VAKEAIQEATRNGSDVV---LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ--------------- 514 (589)
Q Consensus 453 ia~~al~~a~l~~~d~v---liDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q--------------- 514 (589)
....+...+. .++..+ ....+|+++|++.||++|. .+|++++| ||||++||+.++
T Consensus 62 ~~~~~~~~~~-~g~~~~~~~~~~~s~g~~qrv~iAral~-----~~p~~lll-DEPt~~Ld~~~~~R~~~~~~~~vi~~~ 134 (171)
T 4gp7_A 62 LHYIVSKRLQ-LGKLTVVDATNVQESARKPLIEMAKDYH-----CFPVAVVF-NLPEKVCQERNKNRTDRQVEEYVIRKH 134 (171)
T ss_dssp HHHHHHHHHH-TTCCEEEESCCCSHHHHHHHHHHHHHTT-----CEEEEEEE-CCCHHHHHHHHHTCSSCCCCHHHHHHH
T ss_pred HHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHHcC-----CcEEEEEE-eCCHHHHHHHHhcccCCCCCHHHHHHH
Confidence 0011111111 122221 2234999999999999999 48988888 999999999843
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
...+.+.+..+.. .+.+.|++|+
T Consensus 135 ~~~l~~~l~~l~~----~g~tvi~vtH 157 (171)
T 4gp7_A 135 TQQMKKSIKGLQR----EGFRYVYILN 157 (171)
T ss_dssp HHHHHHHSTTHHH----HTCSEEEEEC
T ss_pred HHHhhhhhhhHHh----cCCcEEEEeC
Confidence 1222233333332 2778888887
No 79
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.56 E-value=9.6e-17 Score=175.22 Aligned_cols=179 Identities=12% Similarity=0.072 Sum_probs=112.5
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCc-E-EEEcccccC-ccchhhhhHhh---hhccccc---eec
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-S-VMMAACDTF-RSGAVEQLRTH---ARRLQVP---IFE 443 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G-k-V~l~~~Dt~-RigaveQL~~~---~~~l~v~---l~~ 443 (589)
++++.+.+|+ +++|+||||||||||+++|+|++.|++| + |.+.+ |.. ++++++|.... ...+.+. +..
T Consensus 130 ~vsl~i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~ 206 (460)
T 2npi_A 130 KIRMSNFEGP--RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQQPIFTVPGCISATPISDILDAQLPTWGQ 206 (460)
T ss_dssp HHHHHSSSCC--CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTTSCSSSCSSCCEEEECCSCCCTTCTTCSC
T ss_pred cCceEeCCCC--EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-CccCCeeeeccchhhcccccccchhhhhccc
Confidence 5778888999 9999999999999999999999999999 9 98887 443 37888885421 1111110 111
Q ss_pred cC-CCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHH--HHhhhhhcCCCE----EEEEec-CCCCCCHHHHH
Q 007789 444 KG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRA--LSKLIYLNNPDL----VLFVGE-ALVGNDAVDQL 515 (589)
Q Consensus 444 ~~-~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~Lara--L~kl~~~~~Pdl----ILLVDE-Pt~GlD~~~q~ 515 (589)
.. .+......+.++++.+++..+.. ....||||+||++++++ |+. +|++ +|| || ||++||+. .
T Consensus 207 ~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~-----~p~i~~sGLlL-DEpPts~LD~~--~ 277 (460)
T 2npi_A 207 SLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHL-----DPQVRRSGCIV-DTPSISQLDEN--L 277 (460)
T ss_dssp BCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHH-----CHHHHHSCEEE-ECCCGGGSCSS--C
T ss_pred ccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhcc-----CcccCcceEEE-eCCcccccChh--H
Confidence 10 11111112223344444443322 34459999999999999 995 9999 998 99 99999987 3
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEccccccccchh--hhhHhHHHhC-CCEEEEe-cCCCc
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVG--AALSMVYVSG-APVMFVG-CGQSY 572 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G--~als~~~~~g-~PI~fig-~Gq~v 572 (589)
..+.+.+..+ +++.+++|.-.. +..- .+..++...+ .-|.++- .|.-+
T Consensus 278 ~~l~~l~~~~-------~~tviiVth~~~--~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 278 AELHHIIEKL-------NVNIMLVLCSET--DPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp HHHHHHHHHT-------TCCEEEEECCSS--CTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred HHHHHHHHHh-------CCCEEEEEccCc--hhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 3333333322 567788876321 0011 1223332211 1378887 77765
No 80
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.55 E-value=3.1e-16 Score=153.96 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=83.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc--ccc---c-CccchhhhhHhhhhcc-cc--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--ACD---T-FRSGAVEQLRTHARRL-QV-- 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~--~~D---t-~RigaveQL~~~~~~l-~v-- 439 (589)
.+|++| .+|+ +++|+||||||||||+++|+|+ +|+.|+|... ..+ . .++|+++|.. .+++ ..
T Consensus 14 ~~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--~enl~~~~~ 84 (208)
T 3b85_A 14 HYVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--NEKIDPYLR 84 (208)
T ss_dssp HHHHHH----HHCS--EEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTH
T ss_pred HHHHhc----cCCC--EEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--HHHHHHHHH
Confidence 466664 6899 9999999999999999999999 9999988531 111 1 2488888854 2222 11
Q ss_pred ceeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHH
Q 007789 440 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 519 (589)
Q Consensus 440 ~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 519 (589)
+++...........+.++++. ++ ||+||+.||++|+ .+|+++|| ||||+| .+ ..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~----gl---------Gq~qrv~lAraL~-----~~p~lllL-DEPts~----~~-~~l~ 140 (208)
T 3b85_A 85 PLHDALRDMVEPEVIPKLMEA----GI---------VEVAPLAYMRGRT-----LNDAFVIL-DEAQNT----TP-AQMK 140 (208)
T ss_dssp HHHHHHTTTSCTTHHHHHHHT----TS---------EEEEEGGGGTTCC-----BCSEEEEE-CSGGGC----CH-HHHH
T ss_pred HHHHHHHHhccHHHHHHHHHh----CC---------chHHHHHHHHHHh-----cCCCEEEE-eCCccc----cH-HHHH
Confidence 011100010011223334432 11 9999999999999 49999988 999999 22 2333
Q ss_pred HHHHHhhcCCCCCCccEEEEcc-cccc
Q 007789 520 QKLADLSSSPNPQLIDGILLTK-FDTI 545 (589)
Q Consensus 520 ~~l~~l~~~~~~~~it~IIlTK-lD~~ 545 (589)
+.|..+ . .+.+.| +|+ ++.+
T Consensus 141 ~~l~~l-~----~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 141 MFLTRL-G----FGSKMV-VTGDITQV 161 (208)
T ss_dssp HHHTTB-C----TTCEEE-EEEC----
T ss_pred HHHHHh-c----CCCEEE-EECCHHHH
Confidence 455444 2 256666 665 3443
No 81
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.51 E-value=2.9e-15 Score=152.60 Aligned_cols=140 Identities=17% Similarity=0.105 Sum_probs=80.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc------CccchhhhhHhhhhccccc----eeccCCCCCHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLRTHARRLQVP----IFEKGYEKDPAIV 453 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt------~RigaveQL~~~~~~l~v~----l~~~~~~~d~~~i 453 (589)
..++||||||||||||++.|+|++.|+.|+|.+.+.++ .+++++.|...+...+.+. +............
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 37899999999999999999999999999999988765 2378888865443333211 1111111111122
Q ss_pred HHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007789 454 AKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 532 (589)
Q Consensus 454 a~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~ 532 (589)
+.+.+. ..+...+.. .|||++|++.++|+++ .++|+|||+.|+|+.+. +.+..+...
T Consensus 83 i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~---------~lllldep~~gL~~lD~-----~~l~~L~~~---- 140 (270)
T 3sop_A 83 IEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHC---------CLYFISPTGHSLRPLDL-----EFMKHLSKV---- 140 (270)
T ss_dssp HHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCE---------EEEEECCCSSSCCHHHH-----HHHHHHHTT----
T ss_pred HHHHHH----HHHHhhhHHhcCcccchhhhhheeee---------eeEEEecCCCcCCHHHH-----HHHHHHHhc----
Confidence 222222 122333444 4999999999999766 25556999999999873 445555442
Q ss_pred CccEEEEcccccc
Q 007789 533 LIDGILLTKFDTI 545 (589)
Q Consensus 533 ~it~IIlTKlD~~ 545 (589)
.--.+|++|.|.+
T Consensus 141 ~~vI~Vi~K~D~l 153 (270)
T 3sop_A 141 VNIIPVIAKADTM 153 (270)
T ss_dssp SEEEEEETTGGGS
T ss_pred CcEEEEEeccccC
Confidence 3345899999987
No 82
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.48 E-value=2.2e-14 Score=152.90 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=62.0
Q ss_pred cCccccccHHHHHHHHhhhhhcCC--CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchh
Q 007789 473 TAGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVG 550 (589)
Q Consensus 473 TSGg~qqr~~LaraL~kl~~~~~P--dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G 550 (589)
.|||++|++.||++|.. +| +++|| ||||+|||+..+...+ +.|..+.. +.++|++|+--.
T Consensus 296 lSgGe~qrl~lA~~l~~-----~~~~~~LlL-DEpt~~LD~~~~~~l~-~~L~~l~~-----~~~vi~itH~~~------ 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVL-----GADTPSVVF-DEVDAGIGGAAAIAVA-EQLSRLAD-----TRQVLVVTHLAQ------ 357 (415)
T ss_dssp SCHHHHHHHHHHHHHHH-----CCSSSEEEE-SSTTTTCCHHHHHHHH-HHHHHHTT-----TSEEEEECSCHH------
T ss_pred cCHhHHHHHHHHHHHHh-----CCCCCEEEE-ECCCCCCCHHHHHHHH-HHHHHHhC-----CCEEEEEeCcHH------
Confidence 49999999999999984 88 98888 9999999999875444 77776652 678888887321
Q ss_pred hhhHhHHHhCCCEEEE----ecCCCcccccCCCH
Q 007789 551 AALSMVYVSGAPVMFV----GCGQSYTDLKKLNV 580 (589)
Q Consensus 551 ~als~~~~~g~PI~fi----g~Gq~v~DL~~~~~ 580 (589)
++.+ .--|..+ ..|+.+..+..++.
T Consensus 358 -~~~~----~d~i~~l~k~~~~G~~~~~~~~l~~ 386 (415)
T 4aby_A 358 -IAAR----AHHHYKVEKQVEDGRTVSHVRLLTG 386 (415)
T ss_dssp -HHTT----CSEEEEEEEEEETTEEEEEEEECCS
T ss_pred -HHhh----cCeEEEEEEeccCCceEEEEEECCc
Confidence 1222 3356677 77887766665543
No 83
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.45 E-value=5.1e-14 Score=163.26 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=57.5
Q ss_pred HHHHHHHHhcccCC--CccccccCccccccHHHHHHHHhhhhhcC---CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Q 007789 453 VAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNN---PDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527 (589)
Q Consensus 453 ia~~al~~a~l~~~--d~vliDTSGg~qqr~~LaraL~kl~~~~~---PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~ 527 (589)
.+.++++.+++... +..+-..|||++||+.||++|.. + |+++|| ||||+|||+.++... .+.|..+.+
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~-----~p~~p~lLIL-DEPTsGLD~~~~~~l-~~lL~~L~~ 781 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRR-----SGRGGTVYVL-DEPTTGLHPADVERL-QRQLVKLVD 781 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSS-----CCSSCEEEEE-ECTTTTCCHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHh-----CCCCCCEEEE-ECCCCCCCHHHHHHH-HHHHHHHHh
Confidence 34566777776542 33334459999999999999984 5 577777 999999999987544 477777765
Q ss_pred CCCCCCccEEEEcc
Q 007789 528 SPNPQLIDGILLTK 541 (589)
Q Consensus 528 ~~~~~~it~IIlTK 541 (589)
. +.++|++|+
T Consensus 782 ~----G~tVIvisH 791 (842)
T 2vf7_A 782 A----GNTVIAVEH 791 (842)
T ss_dssp T----TCEEEEECC
T ss_pred C----CCEEEEEcC
Confidence 3 677788877
No 84
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.43 E-value=9.7e-14 Score=132.75 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=75.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc---------CccchhhhhHhhhhccccceeccCCCCCHHHHHH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt---------~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~ 455 (589)
.++|+||||||||||+++|+|++. |.+.|.++ .++|++.|..+..+.+ +...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~----~~~~~~~~------ 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI----FSSKFFTS------ 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE----EEETTCCC------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH----HHhhcCCc------
Confidence 689999999999999999999985 22333221 2356665543111111 11100000
Q ss_pred HHHHHhcccCCCccccccCccccccHHHHHH-----HHhhhhhcCCCEEEEEec--CCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 456 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRA-----LSKLIYLNNPDLVLFVGE--ALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 456 ~al~~a~l~~~d~vliDTSGg~qqr~~Lara-----L~kl~~~~~PdlILLVDE--Pt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
....+....+.||||+|++.|+++ |. .+|++++| || ||+++|+..+ +.+.++...
T Consensus 67 -------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~-----~~p~llil-DEigp~~~ld~~~~-----~~l~~~l~~ 128 (178)
T 1ye8_A 67 -------KKLVGSYGVNVQYFEELAIPILERAYREAKK-----DRRKVIII-DEIGKMELFSKKFR-----DLVRQIMHD 128 (178)
T ss_dssp -------SSEETTEEECHHHHHHHHHHHHHHHHHHHHH-----CTTCEEEE-CCCSTTGGGCHHHH-----HHHHHHHTC
T ss_pred -------cccccccccCcCHHHHHHHHHHhhccccccc-----cCCCEEEE-eCCCCcccCCHHHH-----HHHHHHHhc
Confidence 001123344569999999999996 88 49999988 99 9999998765 233333322
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
.+.+.+++|+
T Consensus 129 ---~~~~~i~~~H 138 (178)
T 1ye8_A 129 ---PNVNVVATIP 138 (178)
T ss_dssp ---TTSEEEEECC
T ss_pred ---CCCeEEEEEc
Confidence 2556778875
No 85
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.42 E-value=1.4e-13 Score=160.55 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=55.9
Q ss_pred HHHHHHhcccC-C-CccccccCccccccHHHHHHHHhhhhhcCC---CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 455 KEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 455 ~~al~~a~l~~-~-d~vliDTSGg~qqr~~LaraL~kl~~~~~P---dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
.++++.+++.. . +..+-..|||++||+.||++|+. +| +++|| ||||+|||+.++.. +.+.|..+...
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~-----~p~~p~lLIL-DEPTsGLD~~~~~~-l~~lL~~L~~~- 897 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR-----RSNGRTLYIL-DEPTTGLHVDDIAR-LLDVLHRLVDN- 897 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSS-----CCCSCEEEEE-ECTTTTCCHHHHHH-HHHHHHHHHHT-
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhc-----CCCCCCEEEE-ECCCCCCCHHHHHH-HHHHHHHHHhC-
Confidence 45666666654 2 23334459999999999999984 54 77777 99999999998754 44777777653
Q ss_pred CCCCccEEEEcc
Q 007789 530 NPQLIDGILLTK 541 (589)
Q Consensus 530 ~~~~it~IIlTK 541 (589)
+.++|++|+
T Consensus 898 ---G~TVIvisH 906 (972)
T 2r6f_A 898 ---GDTVLVIEH 906 (972)
T ss_dssp ---TCEEEEECC
T ss_pred ---CCEEEEEcC
Confidence 677888877
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.39 E-value=5.9e-13 Score=155.64 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=55.0
Q ss_pred HHHHHHHhcccCCC-ccccc-cCccccccHHHHHHHHhhhhhcCC---CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 454 AKEAIQEATRNGSD-VVLVD-TAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 454 a~~al~~a~l~~~d-~vliD-TSGg~qqr~~LaraL~kl~~~~~P---dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
+.++++.+++.... ...+. .||||+||+.||++|.+ +| +++|| ||||+|||+.++... .+.|..+.+.
T Consensus 785 ~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~-----~p~~p~LLIL-DEPTsGLD~~~~~~L-~~lL~~L~~~ 857 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK-----RDTGRTLYIL-DEPTVGLHFEDVRKL-VEVLHRLVDR 857 (916)
T ss_dssp HHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS-----CCCSSEEEEE-ESTTTTCCHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh-----CCCCCCEEEE-ECCCCCCCHHHHHHH-HHHHHHHHhc
Confidence 34456666654221 23344 49999999999999984 54 56666 999999999987544 4777777653
Q ss_pred CCCCCccEEEEcc
Q 007789 529 PNPQLIDGILLTK 541 (589)
Q Consensus 529 ~~~~~it~IIlTK 541 (589)
+.++|++|+
T Consensus 858 ----G~TVIvI~H 866 (916)
T 3pih_A 858 ----GNTVIVIEH 866 (916)
T ss_dssp ----TCEEEEECC
T ss_pred ----CCEEEEEeC
Confidence 678888887
No 87
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.38 E-value=4.7e-13 Score=127.47 Aligned_cols=113 Identities=12% Similarity=0.176 Sum_probs=93.8
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHhhhhccccCCCceeecCCCCceeeEEEEecccceEEEEEeccccc
Q 007789 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (589)
Q Consensus 1 Mld~~~i~t~gG~vLW~~~~~~~~~~~~~in~li~~v~leer~~~~~~~~~~~~~~~~lkw~~~ne~~lvfv~vyq~~l~ 80 (589)
|++.+++|++||+|||+++.. .....++++.+|+.+.. +.+..+|++| +|+++|..+| ||+|++|+++.+.
T Consensus 44 M~ilYa~VaRG~~VLae~t~~-~gnf~~iak~ll~kl~~--~~~r~s~~~~----~y~fHyl~~n--gl~yl~I~D~~yp 114 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWC-GGNFLEVTEQILAKIPS--ENNKLTYSHG----NYLFHYICQD--RIVYLCITDDDFE 114 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESS-CBSHHHHHHHHHTTSCS--SCEEEEEEET----TEEEEEEEET--TEEEEEEEETTSC
T ss_pred CceEEEEEEcCCEEEEEeccC-CCCHHHHHHHHHhhCCC--CCCceEEEEC----CEEEEEEEEC--CEEEEEEEccccc
Confidence 999999999999999995432 24566778888887765 4455689999 9999999987 8999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcC---CCccchHHHHHHHHHHHHHH
Q 007789 81 LLYVDDLLAMMKQSFSEIYDPKR---TDYSDFDEMFRQLRKEAEAR 123 (589)
Q Consensus 81 l~yvd~ll~~v~~~F~~~y~~~~---~~~~~f~~~f~~~l~~~e~~ 123 (589)
..+...||++|+.+|.+.|++.. ..| .|++.|+..|++.+..
T Consensus 115 ~r~AF~fLedI~~eF~~~y~~~~~~a~py-sf~~eF~~~Lk~~~~~ 159 (169)
T 2vx8_A 115 RSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQLKH 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGTCCTT-TTHHHHHHHHSCC---
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccCCc-chhHHHHHHHHHHHHH
Confidence 99999999999999999998643 256 7999999999876654
No 88
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.38 E-value=6.5e-12 Score=131.69 Aligned_cols=176 Identities=24% Similarity=0.264 Sum_probs=108.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcCccc-----ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEE
Q 007789 341 ALKDRLMTKNVAAMEEALVRILTPRR-----SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM 415 (589)
Q Consensus 341 ~l~~~Ll~~~V~al~~~l~~il~p~~-----~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~ 415 (589)
++.+.+++.|-.++.+.+.-+..... ...+|+++++.+..|+ +++|+|+||||||||+++|+|++.|++|+|.
T Consensus 10 ~~~~~~~~~~r~~l~r~i~~ie~~~~~~~~~~~~~l~~i~~~~~~g~--~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~ 87 (337)
T 2qm8_A 10 TLRERLLAGDRAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAI--RVGITGVPGVGKSTTIDALGSLLTAAGHKVA 87 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCCCSE--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHcCCHHHHHHHHHHHeeCCcccccChHHHHHhCCcccCCCe--EEEEECCCCCCHHHHHHHHHHhhhhCCCEEE
Confidence 55566777777766666543322111 1357899999999998 9999999999999999999999999999999
Q ss_pred EcccccCc-------------cchhhhhHhhhhccccceeccCCCCC---HHHHHHHHHHHhcccCCCccccccCccccc
Q 007789 416 MAACDTFR-------------SGAVEQLRTHARRLQVPIFEKGYEKD---PAIVAKEAIQEATRNGSDVVLVDTAGRMQD 479 (589)
Q Consensus 416 l~~~Dt~R-------------igaveQL~~~~~~l~v~l~~~~~~~d---~~~ia~~al~~a~l~~~d~vliDTSGg~qq 479 (589)
+.+.|+.. ++++.|... +.......... ......+++..+...+++++++||+|-.+.
T Consensus 88 i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~------~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~ 161 (337)
T 2qm8_A 88 VLAVDPSSTRTGGSILGDKTRMARLAIDRN------AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS 161 (337)
T ss_dssp EEEECGGGGSSCCCSSCCGGGSTTGGGCTT------EEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC
T ss_pred EEEEcCcccccccchHHHhhhheeeccCcc------cccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc
Confidence 99988742 233333211 11100000001 112233333445567899999999997654
Q ss_pred cHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 480 NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 480 r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
...+ . ...+++++|-+|..+.+. +.+...+.. ..+.++++|+|..
T Consensus 162 ~~~v----~-----~~~d~vl~v~d~~~~~~~----~~i~~~i~~--------~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 162 ETAV----A-----DLTDFFLVLMLPGAGDEL----QGIKKGIFE--------LADMIAVNKADDG 206 (337)
T ss_dssp HHHH----H-----TTSSEEEEEECSCC----------CCTTHHH--------HCSEEEEECCSTT
T ss_pred hhhH----H-----hhCCEEEEEEcCCCcccH----HHHHHHHhc--------cccEEEEEchhcc
Confidence 4322 2 378888888777655321 111011111 2356888999964
No 89
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.38 E-value=3.9e-13 Score=157.27 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=55.5
Q ss_pred HHHHHHhcccC--CCccccccCccccccHHHHHHHHhhhhhcCC---CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 455 KEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 455 ~~al~~a~l~~--~d~vliDTSGg~qqr~~LaraL~kl~~~~~P---dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
.++++.+++.. .+..+-..|||++||+.||++|+. +| +++|| ||||+|||+.+... +.+.|..+...
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~-----~p~~p~lLIL-DEPTsGLD~~~~~~-l~~lL~~L~~~- 915 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQK-----RSTGRTVYIL-DEPTTGLHFDDIRK-LLNVINGLVDK- 915 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSS-----CCCSSEEEEE-ESTTTTCCHHHHHH-HHHHHHHHHHT-
T ss_pred HHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHh-----CCCCCCEEEE-ECCCCCCCHHHHHH-HHHHHHHHHhC-
Confidence 35566666653 233344459999999999999984 54 77777 99999999998754 44777777653
Q ss_pred CCCCccEEEEcc
Q 007789 530 NPQLIDGILLTK 541 (589)
Q Consensus 530 ~~~~it~IIlTK 541 (589)
+.++|++|+
T Consensus 916 ---G~TVIvisH 924 (993)
T 2ygr_A 916 ---GNTVIVIEH 924 (993)
T ss_dssp ---TCEEEEECC
T ss_pred ---CCEEEEEcC
Confidence 677888887
No 90
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.35 E-value=5.3e-15 Score=145.35 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=87.3
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc----------CccchhhhhHhhhhcc--
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHARRL-- 437 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt----------~RigaveQL~~~~~~l-- 437 (589)
-|++|+|.+++|+ +++|+|||||||||++++|+|++ | |+|.+ +.+. .++++++|.......+
T Consensus 12 ~l~~isl~i~~G~--~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 12 SGLVPRGSMNNIY--PLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ----------CCC--CEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCceecCCCC--EEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 5789999999999 99999999999999999999988 5 88888 6543 2367777765443322
Q ss_pred ---cc---ceeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHH-----HHHHHhhhhhcCCCEEEEEecCC
Q 007789 438 ---QV---PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPL-----MRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 438 ---~v---~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~L-----araL~kl~~~~~PdlILLVDEPt 506 (589)
.+ .+....|+... ..+.++++..... ..-++.|||++||..+ +++|. ..|++++| |||+
T Consensus 86 ~~~~l~~~~~~~~~~g~~~-~~i~~~l~~~~~~---il~~~lsggq~qR~~i~~~~~~~~ll-----~~~~~~~L-de~~ 155 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLK-SEYDKAKEQNKIC---LFEMNINGVKQLKKSTHIKNALYIFI-----KPPSTDVL-LSRL 155 (218)
T ss_dssp TTCEEEEEEETTEEEEEEH-HHHHHHHHTTCEE---EEEECHHHHHHHTTCSSCCSCEEEEE-----ECSCHHHH-HHHH
T ss_pred ccchhhhhhcccccCCCcH-HHHHHHHhCCCcE---EEEecHHHHHHHHHHhcCCCcEEEEE-----eCcCHHHH-HHHH
Confidence 11 11111222222 2344555432211 1124559999999888 45554 36777776 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC---CCCCCccEEEEcc
Q 007789 507 VGNDAVDQLSKFNQKLADLSSS---PNPQLIDGILLTK 541 (589)
Q Consensus 507 ~GlD~~~q~~~f~~~l~~l~~~---~~~~~it~IIlTK 541 (589)
+++|..... .+.+.+..+... ......|.|+++.
T Consensus 156 ~~~d~~~~~-~i~~~l~~~~~~~~~~h~~~~d~iiv~~ 192 (218)
T 1z6g_A 156 LTRNTENQE-QIQKRMEQLNIELHEANLLNFNLSIIND 192 (218)
T ss_dssp HHTCCCCHH-HHHHHHHHHHHHHHHHTTSCCSEEEECS
T ss_pred HhcCCCCHH-HHHHHHHHHHHHHHhhcccCCCEEEECC
Confidence 999864322 222333322111 0013567788876
No 91
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.32 E-value=2.3e-13 Score=141.42 Aligned_cols=120 Identities=17% Similarity=0.102 Sum_probs=79.6
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCc--EEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHH
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV--SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G--kV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~ 455 (589)
+.+|+ +++|+||||||||||+++|+|++.|..| +|.+...|.|-.. . +..+++................+.
T Consensus 87 ~~~g~--ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~---~--t~~e~~~~~~~~g~~~~~d~~~~~ 159 (312)
T 3aez_A 87 RPVPF--IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYP---N--AELQRRNLMHRKGFPESYNRRALM 159 (312)
T ss_dssp SCCCE--EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCC---H--HHHHHTTCTTCTTSGGGBCHHHHH
T ss_pred CCCCE--EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCc---c--cHHHHHHHHHhcCCChHHHHHHHH
Confidence 55677 9999999999999999999999999765 4666555543211 0 112222211000001111234456
Q ss_pred HHHHHhcccCCC-ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 456 EAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 456 ~al~~a~l~~~d-~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+.++.++ .+.. ..+-..|||++|++.+++++. .+|+++|| |||+..+|+
T Consensus 160 ~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~-----~~p~ilIl-Dep~~~~d~ 209 (312)
T 3aez_A 160 RFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVV-----RHPDILIL-EGLNVLQTG 209 (312)
T ss_dssp HHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEE-----CSCSEEEE-ECTTTTCCC
T ss_pred HHHHHhC-CCcccCCcccCChhhhhhhhhHHHhc-----cCCCEEEE-CCccccCCc
Confidence 6777776 4444 344445999999999988887 48998888 999999874
No 92
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.28 E-value=1.6e-12 Score=136.00 Aligned_cols=92 Identities=17% Similarity=0.311 Sum_probs=72.9
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 449 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d 449 (589)
+++++++.+.+|+ +++|+||||||||||++.|+|++.|+.|.|.+.+.+.+... + +.+. +.++.
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~---~---~~~~--i~~~~------ 223 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK---H---HKNY--TQLFF------ 223 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS---S---CSSE--EEEEC------
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc---c---chhE--EEEEe------
Confidence 5677888888999 99999999999999999999999999999999876533211 0 1111 11110
Q ss_pred HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 507 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~ 507 (589)
+ ||++|+..|+++|. .+|+++++ |||++
T Consensus 224 ----------------------g--gg~~~r~~la~aL~-----~~p~ilil-dE~~~ 251 (330)
T 2pt7_A 224 ----------------------G--GNITSADCLKSCLR-----MRPDRIIL-GELRS 251 (330)
T ss_dssp ----------------------B--TTBCHHHHHHHHTT-----SCCSEEEE-CCCCS
T ss_pred ----------------------C--CChhHHHHHHHHhh-----hCCCEEEE-cCCCh
Confidence 0 89999999999998 49999998 99998
No 93
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.26 E-value=5.4e-12 Score=133.65 Aligned_cols=84 Identities=13% Similarity=0.021 Sum_probs=58.1
Q ss_pred ccCccccccHHHHHHHHhhh-hhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchh
Q 007789 472 DTAGRMQDNEPLMRALSKLI-YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVG 550 (589)
Q Consensus 472 DTSGg~qqr~~LaraL~kl~-~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G 550 (589)
..||||+|++.|+++|+... -..+|+++|| ||||+|||+..+...+ +.|..+... +.+++++|+ |.-
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lll-DEpt~~LD~~~~~~~~-~~l~~l~~~----g~tvi~itH-~~~----- 346 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFI-DEGFSSLDTENKEKIA-SVLKELERL----NKVIVFITH-DRE----- 346 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEE-ESCCTTSCHHHHHHHH-HHHHGGGGS----SSEEEEEES-CHH-----
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEE-eCCCccCCHHHHHHHH-HHHHHHHhC----CCEEEEEec-chH-----
Confidence 45999999999999998200 0138999888 9999999999875444 667766542 678888887 321
Q ss_pred hhhHhHHHhCCCEEEEecCCCc
Q 007789 551 AALSMVYVSGAPVMFVGCGQSY 572 (589)
Q Consensus 551 ~als~~~~~g~PI~fig~Gq~v 572 (589)
+. ...-.|..+..|+-+
T Consensus 347 ----~~-~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 347 ----FS-EAFDRKLRITGGVVV 363 (365)
T ss_dssp ----HH-TTCSCEEEEETTEEC
T ss_pred ----HH-HhCCEEEEEECCEEE
Confidence 11 112357777777654
No 94
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.22 E-value=1.5e-11 Score=127.65 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=46.5
Q ss_pred ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 472 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 472 DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
..|||++|++.|+++|+.+ ...+|+++|| ||||++||+..+...+ +.+..+.. +.+.|++|+-
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~-~~~~~~~lll-DEp~~~LD~~~~~~l~-~~l~~~~~-----~~~vi~~tH~ 281 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALM-EIKPSPFYVL-DEVDSPLDDYNAERFK-RLLKENSK-----HTQFIVITHN 281 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHT-TTSCCSEEEE-ESCCSSCCHHHHHHHH-HHHHHHTT-----TSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHHh-ccCCCCEEEE-eCCCCCCCHHHHHHHH-HHHHHhcC-----CCeEEEEECC
Confidence 4599999999999999721 1136788887 9999999998875444 66666532 5667777774
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.20 E-value=3e-11 Score=122.28 Aligned_cols=98 Identities=22% Similarity=0.338 Sum_probs=69.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-CcEEEEcccccCccchhhhhHhhhhccccceeccCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 447 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~ 447 (589)
.+|++++ +.+|+ +++|+||||||||||+++|++++.|+ +|+|.+.+.++ +++.|.. +.+....
T Consensus 15 ~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i---~~~~~~~-------~~~v~q~-- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI---EYVFKHK-------KSIVNQR-- 78 (261)
T ss_dssp THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC---CSCCCCS-------SSEEEEE--
T ss_pred HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc---eeecCCc-------ceeeeHH--
Confidence 4788888 67888 99999999999999999999999998 89999988764 2222210 0010000
Q ss_pred CCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
.+ +.+. ..-+..|+++|.. +|+++|+ |||+ |+...
T Consensus 79 ------------~~---gl~~--------~~l~~~la~aL~~-----~p~illl-DEp~---D~~~~ 113 (261)
T 2eyu_A 79 ------------EV---GEDT--------KSFADALRAALRE-----DPDVIFV-GEMR---DLETV 113 (261)
T ss_dssp ------------EB---TTTB--------SCHHHHHHHHHHH-----CCSEEEE-SCCC---SHHHH
T ss_pred ------------Hh---CCCH--------HHHHHHHHHHHhh-----CCCEEEe-CCCC---CHHHH
Confidence 00 1110 1226889999984 9999998 9999 77654
No 96
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.17 E-value=6.5e-12 Score=130.22 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=76.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhh-ccccceeccCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR-RLQVPIFEKGYE 447 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~-~l~v~l~~~~~~ 447 (589)
.+|+++++.+++|+ +++|+||||||||||++.|+|++ +|+|....... ..+.+ .++.+ ++.+ ... .
T Consensus 114 ~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~---~~lf~-~ti~~~ni~~--~~~-~- 180 (305)
T 2v9p_A 114 NALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHK---SHFWL-ASLADTRAAL--VDD-A- 180 (305)
T ss_dssp HHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTT---SGGGG-GGGTTCSCEE--EEE-E-
T ss_pred hhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCc---ccccc-ccHHHHhhcc--Ccc-c-
Confidence 47899999999999 99999999999999999999998 79996432111 11111 12222 3322 111 0
Q ss_pred CCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
. ..+.+.++.+-..+++ ....||||+|| ||+|.+ +|+++| |++||+...
T Consensus 181 -~--~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~-----~p~iLl-----Ts~LD~~~~ 229 (305)
T 2v9p_A 181 -T--HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIK-----APPLLV-----TSNIDVQAE 229 (305)
T ss_dssp -C--HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEEC-----CCCEEE-----EESSCSTTC
T ss_pred -c--HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhC-----CCCEEE-----ECCCCHHHH
Confidence 1 1233444442112333 34459999999 888885 899887 999998765
No 97
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.17 E-value=4.6e-11 Score=121.66 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=46.8
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCc-EEEEccccc
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDT 421 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G-kV~l~~~Dt 421 (589)
.+.+|+++++.+.+|+ +++|+|+||+|||||+..|++.+.++.| +|.+.+.+.
T Consensus 21 g~~~Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 21 GCTGINDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp SCTTHHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CHHHHHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 3568999999999999 9999999999999999999999999866 888776553
No 98
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.14 E-value=1.6e-10 Score=120.97 Aligned_cols=182 Identities=21% Similarity=0.193 Sum_probs=103.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcCccc-----ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEE
Q 007789 341 ALKDRLMTKNVAAMEEALVRILTPRR-----SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM 415 (589)
Q Consensus 341 ~l~~~Ll~~~V~al~~~l~~il~p~~-----~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~ 415 (589)
.+.+.+++.|..+|.+.++-+-.... ...++.++++....+. +++|+|+||+||||+++.|++.+.+.+++|.
T Consensus 11 ~~~~~~~~~~r~~l~~~i~~ie~~~~~~~~~~~~~~~~l~~~~~~~~--~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 11 ESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTL--RLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHGGGCSCSE--EEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHcCCHHHHHhhhhHhhcCCchhhhHHHHHHHhCCcccCCCE--EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 45566677777777776654432221 1246778888776766 9999999999999999999999999999999
Q ss_pred EcccccCccc---hhhhhHhhhhcc----ccceeccCCC---CCHHHHHHHHHHHhcccCCCccccccCccccccHHHHH
Q 007789 416 MAACDTFRSG---AVEQLRTHARRL----QVPIFEKGYE---KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMR 485 (589)
Q Consensus 416 l~~~Dt~Rig---aveQL~~~~~~l----~v~l~~~~~~---~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~Lar 485 (589)
+.+.|.++.. .+.......+.+ +..+.....+ ........+.+..+...+++++++||+|-.+....
T Consensus 89 v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~--- 165 (341)
T 2p67_A 89 VIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE--- 165 (341)
T ss_dssp EEEECCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---
T ss_pred EEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---
Confidence 9999986421 111111101111 0001000000 01111222333334456889999999986543222
Q ss_pred HHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 486 ALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 486 aL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+. ...|.+++|-+|..+.+. +.+.... .. ....+++||+|..
T Consensus 166 -~~-----~~aD~vl~Vvd~~~~~~~----~~l~~~~---~~-----~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 166 -VA-----RMVDCFISLQIAGGGDDL----QGIKKGL---ME-----VADLIVINKDDGD 207 (341)
T ss_dssp -HH-----TTCSEEEEEECC----------CCCCHHH---HH-----HCSEEEECCCCTT
T ss_pred -HH-----HhCCEEEEEEeCCccHHH----HHHHHhh---hc-----ccCEEEEECCCCC
Confidence 22 388999998888765321 0010000 00 1346999999986
No 99
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.14 E-value=8.3e-13 Score=128.01 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=75.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-----CccchhhhhHhhhhccc----c
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQ----V 439 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-----~RigaveQL~~~~~~l~----v 439 (589)
.++++ ..+.+|+ +++|+||||||||||+++|+|++..-.+.+.+.+.+. .++++++|.......+. +
T Consensus 10 ~~~~~--~~i~~Ge--i~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 10 PTARG--QPAAVGR--VVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp -----------CCC--EEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred cCCCC--CCCCCCC--EEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 45666 5788999 9999999999999999999999852222211111111 23677777654333221 1
Q ss_pred c----eec--cCCCCCHHHHHHHHHHHhcccCCCccc-cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC---
Q 007789 440 P----IFE--KGYEKDPAIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN--- 509 (589)
Q Consensus 440 ~----l~~--~~~~~d~~~ia~~al~~a~l~~~d~vl-iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl--- 509 (589)
. ++. ..++..... +.+.+..+ ...++ ++..|....+......|. +=..+|++++| |||++|+
T Consensus 86 ~~~~~~~~n~~~~g~~~~~-~~~~~~~~----~~~~~~l~~~gl~~~~~~~~~~lS--~l~~~p~~~~L-Dep~~~l~~~ 157 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQP-VRAAAATG----VPVLIEVDLAGARAIKKTMPEAVT--VFLAPPSWQDL-QARLIGRGTE 157 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHH-HHHHHHHT----CCEEEECCHHHHHHHHHHCTTSEE--EEEECSCHHHH-HHHHHTTSCS
T ss_pred eeehhhcCchhhcCCcHHH-HHHHHHcC----CeEEEEeCHHHHHHHHHhcCCcEE--EEEECCCHHHH-HHHHHhcCCC
Confidence 0 111 112222222 22222211 11111 222332211111111111 01147777777 9999998
Q ss_pred -CHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 510 -DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 510 -D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
|+..+ ..+.+.+.++... .+.+.+++|+
T Consensus 158 ~d~~~~-~~l~~~l~~l~~~---~g~tvi~vtH 186 (207)
T 1znw_A 158 TADVIQ-RRLDTARIELAAQ---GDFDKVVVNR 186 (207)
T ss_dssp CHHHHH-HHHHHHHHHHHGG---GGSSEEEECS
T ss_pred CHHHHH-HHHHHHHHHHhhh---ccCcEEEECC
Confidence 55554 3444667777542 2678888886
No 100
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.13 E-value=1.2e-10 Score=128.80 Aligned_cols=143 Identities=13% Similarity=0.043 Sum_probs=90.6
Q ss_pred ccccccccc-ccccCCceEEEEEecCCCcHHHHHHH--HHHhHhhCCcEEEEccccc--------CccchhhhhHhhhhc
Q 007789 368 IDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAK--VAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHARR 436 (589)
Q Consensus 368 i~iL~~Is~-~i~~Gep~iI~LVGpNGvGKTTlLak--LAgll~~~~GkV~l~~~Dt--------~RigaveQL~~~~~~ 436 (589)
+.+|++|++ .+++|+ +++|+||||||||||++. ++|+++|..|.|.+.+.+. .++|++.|......+
T Consensus 25 ~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~ 102 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 102 (525)
T ss_dssp CTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS
T ss_pred chhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc
Confidence 578999999 999999 999999999999999999 6899999999999998774 125555554332111
Q ss_pred cccceeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC-----CCH
Q 007789 437 LQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-----NDA 511 (589)
Q Consensus 437 l~v~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G-----lD~ 511 (589)
+.... ... + .. ...+++.-|-......+..+|. ..+|+.+++ ||||+. +|+
T Consensus 103 --l~~~~-~~~-~--------------~~-~~~~l~~~~l~~~~~~~~~~LS----~g~~~~lil-De~t~~~~~~~lD~ 158 (525)
T 1tf7_A 103 --LFILD-ASP-D--------------PE-GQEVVGGFDLSALIERINYAIQ----KYRARRVSI-DSVTSVFQQYDASS 158 (525)
T ss_dssp --EEEEE-CCC-C--------------SS-CCSCCSSHHHHHHHHHHHHHHH----HHTCSEEEE-ECSTTTSTTTCCHH
T ss_pred --EEEEe-cCc-c--------------cc-hhhhhcccCHHHHHHHHHHHHH----HcCCCEEEE-CCHHHHHHhcCCHH
Confidence 11110 000 0 00 0011111111112223334443 268999988 999984 577
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
..+. .+.+.+..+... +++.+++|+
T Consensus 159 ~~~~-~l~~ll~~l~~~----g~tvl~itH 183 (525)
T 1tf7_A 159 VVRR-ELFRLVARLKQI----GATTVMTTE 183 (525)
T ss_dssp HHHH-HHHHHHHHHHHH----TCEEEEEEE
T ss_pred HHHH-HHHHHHHHHHHC----CCEEEEEec
Confidence 6654 344777777542 677777776
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.13 E-value=2.2e-10 Score=110.60 Aligned_cols=154 Identities=9% Similarity=0.005 Sum_probs=85.2
Q ss_pred ccccccccc-ccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCC
Q 007789 368 IDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 446 (589)
Q Consensus 368 i~iL~~Is~-~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~ 446 (589)
+..|+++.. .+++|+ +++|+||||+||||+++.|++.+.+.+++|.+.+.+.. .+++......+++.+...
T Consensus 9 ~~~Ld~~~~ggi~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~-- 80 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGF--FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES----RDSIIRQAKQFNWDFEEY-- 80 (235)
T ss_dssp CHHHHGGGTTSEETTC--EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC----HHHHHHHHHHTTCCCGGG--
T ss_pred chHHHHHhcCCCcCCC--EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC----HHHHHHHHHHhcchHHHH--
Confidence 456777776 688999 99999999999999999999988888999999877652 122222221222211000
Q ss_pred CCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCC--EEEEEecCCCCC--CHHHHHHHHHHH
Q 007789 447 EKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGN--DAVDQLSKFNQK 521 (589)
Q Consensus 447 ~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~Pd--lILLVDEPt~Gl--D~~~q~~~f~~~ 521 (589)
......+......... .....+. +.++ +.+.+..++...+|+ ++++ |||++++ |+..+.. +...
T Consensus 81 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~llil-De~~~~~~~d~~~~~~-~~~~ 149 (235)
T 2w0m_A 81 IEKKLIIIDALMKEKE----DQWSLVNLTPEE-----LVNKVIEAKQKLGYGKARLVI-DSVSALFLDKPAMARK-ISYY 149 (235)
T ss_dssp BTTTEEEEECCC--------CTTBCSSCCHHH-----HHHHHHHHHHHHCSSCEEEEE-ETGGGGSSSCGGGHHH-HHHH
T ss_pred hhCCEEEEeccccccC----ceeeecCCCHHH-----HHHHHHHHHHhhCCCceEEEE-ECchHhhcCCHHHHHH-HHHH
Confidence 0000000000000000 0111122 2222 222233333346899 8887 9999777 8765543 3356
Q ss_pred HHHhhcCCCCCCccEEEEcccc
Q 007789 522 LADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 522 l~~l~~~~~~~~it~IIlTKlD 543 (589)
|..++.. .+++.+++|+.-
T Consensus 150 l~~~~~~---~~~~vi~~~h~~ 168 (235)
T 2w0m_A 150 LKRVLNK---WNFTIYATSQYA 168 (235)
T ss_dssp HHHHHHH---TTEEEEEEEC--
T ss_pred HHHHHHh---CCCeEEEEeccC
Confidence 6666533 378888888754
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.11 E-value=1.3e-11 Score=144.43 Aligned_cols=136 Identities=17% Similarity=0.217 Sum_probs=85.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-hCCcEEEEcccccCccchhhhhHhhhhccccceeccCCC
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 447 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~ 447 (589)
.+++++++.+.+|+ +++|+||||+||||+|+.|+++.. .+.|.. ..+...+++.+++ ++... +
T Consensus 661 ~V~ndvsl~~~~g~--i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~--vpa~~~~i~~~d~-----------i~~~i-g 724 (918)
T 3thx_B 661 YVPNNTDLSEDSER--VMIITGPNMGGKSSYIKQVALITIMAQIGSY--VPAEEATIGIVDG-----------IFTRM-G 724 (918)
T ss_dssp SCCEEEEECTTSCC--EEEEESCCCHHHHHHHHHHHHHHHHHHHTCC--BSSSEEEEECCSE-----------EEEEC--
T ss_pred eecccccccCCCCe--EEEEECCCCCchHHHHHHHHHHHHHhhcCcc--ccchhhhhhHHHH-----------HHHhC-C
Confidence 36778999999999 999999999999999999987532 211210 0011111111111 11110 0
Q ss_pred CCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhh
Q 007789 448 KDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 526 (589)
Q Consensus 448 ~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~ 526 (589)
..+.-.....+ +++|++...+++++ .+|+++|| |||++|+|+.+........+..+.
T Consensus 725 ---------------~~d~l~~~~stfs~em~~~~~il~~a------~~p~LlLL-DEP~~GlD~~~~~~i~~~il~~L~ 782 (918)
T 3thx_B 725 ---------------AADNIYKGRSTFMEELTDTAEIIRKA------TSQSLVIL-DELGRGTSTHDGIAIAYATLEYFI 782 (918)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHC------CTTCEEEE-ESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHhHHHhhHHHHHHHHHHHhc------cCCCEEEE-eCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00000111234 78888888777762 48999888 999999999988766656676665
Q ss_pred cCCCCCCccEEEEcccccc
Q 007789 527 SSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 527 ~~~~~~~it~IIlTKlD~~ 545 (589)
.. .+.+++++|+.-+.
T Consensus 783 ~~---~g~tvl~vTH~~el 798 (918)
T 3thx_B 783 RD---VKSLTLFVTHYPPV 798 (918)
T ss_dssp HT---TCCEEEEECSCGGG
T ss_pred Hh---cCCeEEEEeCcHHH
Confidence 42 26788999985443
No 103
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.11 E-value=1.6e-10 Score=113.20 Aligned_cols=142 Identities=13% Similarity=0.043 Sum_probs=74.7
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHH--HhHhhCCcEEEEcccccC--------ccchhhhhHhhhhccccceeccCC
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVA--YWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQVPIFEKGY 446 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLA--gll~~~~GkV~l~~~Dt~--------RigaveQL~~~~~~l~v~l~~~~~ 446 (589)
-+++|+ +++|+||||||||||++.|+ +++.+.++.+.+.+.+.. ++|+..|.......+. ++.. .
T Consensus 26 gi~~G~--~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~-~ 100 (251)
T 2ehv_A 26 GFPEGT--TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA--IVDG-V 100 (251)
T ss_dssp SEETTC--EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE--EEC---
T ss_pred CCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE--EEEc-c
Confidence 577999 99999999999999999999 554666666666554431 1232222211111111 1100 0
Q ss_pred CCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC----HHHHHHHHHHHH
Q 007789 447 EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND----AVDQLSKFNQKL 522 (589)
Q Consensus 447 ~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD----~~~q~~~f~~~l 522 (589)
.. .... . .. ......+.. ....++..+...+...+|+++++ |||++++| +......+...+
T Consensus 101 ~~-~~~~-----~---~~-~~~~~~~~~----~~~~~~~~~~~~l~~~~p~~lil-Dep~~~ld~~~d~~~~~~~l~~l~ 165 (251)
T 2ehv_A 101 SS-VVGL-----P---SE-EKFVLEDRF----NVDNFLRYIYRVVKAINAKRLVI-DSIPSIALRLEEERKIREVLLKLN 165 (251)
T ss_dssp ---------------------------C----CHHHHHHHHHHHHHHTTCSEEEE-ECHHHHHHHSSSGGGHHHHHHHHH
T ss_pred cc-cccc-----c---cc-cceeccCcc----cHHHHHHHHHHHHHhhCCCEEEE-ccHHHHHhhcCCHHHHHHHHHHHH
Confidence 00 0000 0 00 000011111 11223333333344579999988 99999986 233334455666
Q ss_pred HHhhcCCCCCCccEEEEccc
Q 007789 523 ADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 523 ~~l~~~~~~~~it~IIlTKl 542 (589)
..+.+. +.+++++|+.
T Consensus 166 ~~l~~~----g~tii~vtH~ 181 (251)
T 2ehv_A 166 TILLEM----GVTTILTTEA 181 (251)
T ss_dssp HHHHHH----CCEEEEEECC
T ss_pred HHHHHC----CCeEEEEECC
Confidence 666442 7788888874
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.05 E-value=3e-10 Score=125.53 Aligned_cols=133 Identities=11% Similarity=-0.030 Sum_probs=88.9
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEE-EEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHH
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV-MMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 455 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV-~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~ 455 (589)
.+.+|+ +++|+|+||+|||||+..|++.+.++++++ .+...+. ..|+......+++ +...
T Consensus 277 ~i~~G~--i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-----~~~l~~~~~~~g~---------~~~~--- 337 (525)
T 1tf7_A 277 GFFKDS--IILATGATGTGKTLLVSRFVENACANKERAILFAYEES-----RAQLLRNAYSWGM---------DFEE--- 337 (525)
T ss_dssp SEESSC--EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-----HHHHHHHHHTTSC---------CHHH---
T ss_pred CCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-----HHHHHHHHHHcCC---------CHHH---
Confidence 567899 999999999999999999999998875555 4444443 1244333333322 1111
Q ss_pred HHHHHhcccC-CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH-----HHHHHHHHHHHHhhcCC
Q 007789 456 EAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV-----DQLSKFNQKLADLSSSP 529 (589)
Q Consensus 456 ~al~~a~l~~-~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~-----~q~~~f~~~l~~l~~~~ 529 (589)
+. ..++.. .+..+...|||++|++.+++++. .+|+++++ | ||+|+|.. .+ ..+.+.+..+...
T Consensus 338 -~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~-----~~p~llil-D-p~~~Ld~~~~~~~~~-~~i~~ll~~l~~~- 406 (525)
T 1tf7_A 338 -ME-RQNLLKIVCAYPESAGLEDHLQIIKSEIND-----FKPARIAI-D-SLSALARGVSNNAFR-QFVIGVTGYAKQE- 406 (525)
T ss_dssp -HH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-E-CHHHHTSSSCHHHHH-HHHHHHHHHHHHT-
T ss_pred -HH-hCCCEEEEEeccccCCHHHHHHHHHHHHHh-----hCCCEEEE-c-ChHHHHhhCChHHHH-HHHHHHHHHHHhC-
Confidence 11 122211 22334455999999999999988 49999988 9 99999986 44 3344556555543
Q ss_pred CCCCccEEEEccc
Q 007789 530 NPQLIDGILLTKF 542 (589)
Q Consensus 530 ~~~~it~IIlTKl 542 (589)
+++++++|..
T Consensus 407 ---g~tvilvsh~ 416 (525)
T 1tf7_A 407 ---EITGLFTNTS 416 (525)
T ss_dssp ---TCEEEEEEEC
T ss_pred ---CCEEEEEECc
Confidence 7787887764
No 105
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.03 E-value=2.8e-09 Score=112.14 Aligned_cols=138 Identities=22% Similarity=0.282 Sum_probs=76.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCcc---chhhhhHhhhhccccc--eecc---------CCCC
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---GAVEQLRTHARRLQVP--IFEK---------GYEK 448 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Ri---gaveQL~~~~~~l~v~--l~~~---------~~~~ 448 (589)
..+|+|+|++|||||||++.|++++.+.+++|.+.+.|++.. |++.+.+...+.++.. .+.. +...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 459999999999999999999999999999999999998642 3333333222222210 1100 1111
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
+. .+++..+...+++++++||+|-.+... .+. ...+++++|-+|..|.+.. .+.. .+.+
T Consensus 154 ~~----~~~~~~~~~~~~~~iliDT~Gi~~~~~----~l~-----~~~d~vl~V~d~~~~~~~~----~i~~---~il~- 212 (349)
T 2www_A 154 TT----NEAILLCEGAGYDIILIETVGVGQSEF----AVA-----DMVDMFVLLLPPAGGDELQ----GIKR---GIIE- 212 (349)
T ss_dssp TH----HHHHHHHHHTTCSEEEEECCCC--CHH----HHH-----TTCSEEEEEECCC-------------------CC-
T ss_pred HH----HHHHHhhccCCCCEEEEECCCcchhhh----hHH-----hhCCEEEEEEcCCcchhHH----HhHH---HHHh-
Confidence 11 222333345688999999999533322 233 3789888888887764321 1111 1111
Q ss_pred CCCCCccEEEEcccccc
Q 007789 529 PNPQLIDGILLTKFDTI 545 (589)
Q Consensus 529 ~~~~~it~IIlTKlD~~ 545 (589)
....++++|+|..
T Consensus 213 ----~~~ivVlNK~Dl~ 225 (349)
T 2www_A 213 ----MADLVAVTKSDGD 225 (349)
T ss_dssp ----SCSEEEECCCSGG
T ss_pred ----cCCEEEEeeecCC
Confidence 2467999999986
No 106
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.03 E-value=1.5e-10 Score=137.23 Aligned_cols=130 Identities=20% Similarity=0.168 Sum_probs=82.1
Q ss_pred ccccccccccc-------CCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccc-hhhhhHhhhhcccc--
Q 007789 370 ILRDVHAAKEQ-------RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG-AVEQLRTHARRLQV-- 439 (589)
Q Consensus 370 iL~~Is~~i~~-------Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Rig-aveQL~~~~~~l~v-- 439 (589)
+++++++.+.. |+ +++|+||||+||||+|+.| |++.+. -++| +|+|... .+.+
T Consensus 771 v~ndi~l~~~~~~~~~~~g~--i~~ItGpNgsGKSTlLr~i-Gl~~~~-----------aqiG~~Vpq~~~---~l~v~d 833 (1022)
T 2o8b_B 771 IPNDILIGCEEEEQENGKAY--CVLVTGPNMGGKSTLMRQA-GLLAVM-----------AQMGCYVPAEVC---RLTPID 833 (1022)
T ss_dssp CCEEEEESCCCSCC---CCC--EEEEECCTTSSHHHHHHHH-HHHHHH-----------HTTTCCEESSEE---EECCCS
T ss_pred EeeeeeeccccccccCCCCc--EEEEECCCCCChHHHHHHH-HHHHHH-----------hheeEEeccCcC---CCCHHH
Confidence 56777887765 77 9999999999999999999 887641 1334 5555321 1111
Q ss_pred ceeccCCCCCHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHH
Q 007789 440 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 518 (589)
Q Consensus 440 ~l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 518 (589)
.++.. .+. .+....-..| +++|.+ +.++++++ .+|.++|| |||++|+|+.+....+
T Consensus 834 ~I~~r-ig~---------------~d~~~~~~stf~~em~~-~a~al~la-----~~~sLlLL-DEp~~Gtd~~dg~~~~ 890 (1022)
T 2o8b_B 834 RVFTR-LGA---------------SDRIMSGESTFFVELSE-TASILMHA-----TAHSLVLV-DELGRGTATFDGTAIA 890 (1022)
T ss_dssp BEEEE-CC------------------------CHHHHHHHH-HHHHHHHC-----CTTCEEEE-ECTTTTSCHHHHHHHH
T ss_pred HHHHH-cCC---------------HHHHhhchhhhHHHHHH-HHHHHHhC-----CCCcEEEE-ECCCCCCChHHHHHHH
Confidence 01111 010 0000011234 555553 66676666 48888888 9999999999865556
Q ss_pred HHHHHHhhcCCCCCCccEEEEccc
Q 007789 519 NQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 519 ~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...+..+... .+.+++++|+.
T Consensus 891 ~~il~~L~~~---~g~~vl~~TH~ 911 (1022)
T 2o8b_B 891 NAVVKELAET---IKCRTLFSTHY 911 (1022)
T ss_dssp HHHHHHHHHT---SCCEEEEECCC
T ss_pred HHHHHHHHhc---CCCEEEEEeCC
Confidence 6777777653 26677888885
No 107
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.02 E-value=3.8e-10 Score=109.15 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=35.4
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-------CCcEEEEcccccC
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-------HKVSVMMAACDTF 422 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-------~~GkV~l~~~Dt~ 422 (589)
-+++|+ +++|+||||||||||++.|++.+.+ .++.|.+.+.+.+
T Consensus 21 gi~~G~--~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~ 71 (231)
T 4a74_A 21 GIETQA--ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 71 (231)
T ss_dssp SEESSE--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC
T ss_pred CCCCCc--EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC
Confidence 466888 9999999999999999999997665 4456666666544
No 108
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.02 E-value=1.6e-10 Score=133.18 Aligned_cols=128 Identities=21% Similarity=0.225 Sum_probs=80.7
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-hCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
+++++++. |+ +++|+||||+||||+|+.|+|+.. ++.|.+. .....+++.++|+. ..+++
T Consensus 568 vl~disl~---g~--i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--pa~~~~i~~v~~i~---~~~~~--------- 628 (765)
T 1ewq_A 568 VPNDLEMA---HE--LVLITGPNMAGKSTFLRQTALIALLAQVGSFV--PAEEAHLPLFDGIY---TRIGA--------- 628 (765)
T ss_dssp CCEEEEES---SC--EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--SSSEEEECCCSEEE---EECCC---------
T ss_pred EeeeccCC---Cc--EEEEECCCCCChHHHHHHHHhhhhhcccCcee--ehhccceeeHHHhh---ccCCH---------
Confidence 56778777 88 999999999999999999999874 6767542 11222355555421 11110
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC---CCCCCHHHHHHHHHHHHHHh
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA---LVGNDAVDQLSKFNQKLADL 525 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP---t~GlD~~~q~~~f~~~l~~l 525 (589)
.+.+....|+++.++..++++|.. ..+|+++|| ||| |+++|+......+.+.+..
T Consensus 629 -----------------~d~l~~g~S~~~~e~~~la~il~~---a~~p~LlLL-DEpgrGTs~lD~~~~~~~i~~~L~~- 686 (765)
T 1ewq_A 629 -----------------SDDLAGGKSTFMVEMEEVALILKE---ATENSLVLL-DEVGRGTSSLDGVAIATAVAEALHE- 686 (765)
T ss_dssp -----------------------CCSHHHHHHHHHHHHHHH---CCTTEEEEE-ESTTTTSCHHHHHHHHHHHHHHHHH-
T ss_pred -----------------HHHHHhcccHHHHHHHHHHHHHHh---ccCCCEEEE-ECCCCCCCCcCHHHHHHHHHHHHHh-
Confidence 011112346777788888877732 258888887 999 8888876654333344432
Q ss_pred hcCCCCCCccEEEEccccc
Q 007789 526 SSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 526 ~~~~~~~~it~IIlTKlD~ 544 (589)
.+.+++++|+.-+
T Consensus 687 ------~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 687 ------RRAYTLFATHYFE 699 (765)
T ss_dssp ------HTCEEEEECCCHH
T ss_pred ------CCCEEEEEeCCHH
Confidence 2678888888533
No 109
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.02 E-value=2.6e-10 Score=133.85 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=82.1
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH-hhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll-~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
+++++++.+..|+ +++|+||||+||||+|+.|+... .++.|. +..++..+++.+++ ++..
T Consensus 651 v~ndisl~~~~g~--i~~ItGpNGsGKSTlLr~ial~~~~aq~G~--~vpa~~~~~~~~d~-----------i~~~---- 711 (934)
T 3thx_A 651 IPNDVYFEKDKQM--FHIITGPNMGGKSTYIRQTGVIVLMAQIGC--FVPCESAEVSIVDC-----------ILAR---- 711 (934)
T ss_dssp CCEEEEEETTTBC--EEEEECCTTSSHHHHHHHHHHHHHHHHHTC--CBSEEEEEEECCSE-----------EEEE----
T ss_pred ecccceeecCCCe--EEEEECCCCCCHHHHHHHHHHHHHHHhcCC--ccccccccchHHHH-----------HHHh----
Confidence 5668899888899 99999999999999999996422 222220 00001011111110 1111
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 528 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~ 528 (589)
++.. +...-..|+++.+...+++.|.. ..+|+++|| |||++|+|+.+........+..+...
T Consensus 712 ------------ig~~--d~l~~~lStf~~e~~~~a~il~~---a~~~sLlLL-DEp~~GlD~~~~~~i~~~il~~l~~~ 773 (934)
T 3thx_A 712 ------------VGAG--DSQLKGVSTFMAEMLETASILRS---ATKDSLIII-DELGRGTSTYDGFGLAWAISEYIATK 773 (934)
T ss_dssp ------------CC-----------CHHHHHHHHHHHHHHH---CCTTCEEEE-ESCSCSSCHHHHHHHHHHHHHHHHHT
T ss_pred ------------cCch--hhHHHhHhhhHHHHHHHHHHHHh---ccCCcEEEE-eCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 0000 11112236666666667666632 258888888 99999999998776656666666543
Q ss_pred CCCCCccEEEEcccccc
Q 007789 529 PNPQLIDGILLTKFDTI 545 (589)
Q Consensus 529 ~~~~~it~IIlTKlD~~ 545 (589)
.+.+++++|+..+.
T Consensus 774 ---~g~~vl~aTH~~el 787 (934)
T 3thx_A 774 ---IGAFCMFATHFHEL 787 (934)
T ss_dssp ---TCCEEEEEESCGGG
T ss_pred ---CCCEEEEEcCcHHH
Confidence 26788999986554
No 110
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.00 E-value=9.9e-10 Score=115.54 Aligned_cols=175 Identities=23% Similarity=0.280 Sum_probs=100.3
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc---CccchhhhhHhhhhcc----ccceeccCCCCC---
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---FRSGAVEQLRTHARRL----QVPIFEKGYEKD--- 449 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt---~RigaveQL~~~~~~l----~v~l~~~~~~~d--- 449 (589)
.+++.+|+|+|+.||||||++..|+..+...+.+|.+..+|+ ++.|++.+.+.....+ ++.+........
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 345679999999999999999999998888888999999995 4455555444332222 222222111111
Q ss_pred HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 529 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~ 529 (589)
......+++..+...+++++++||+|-.+.... +. ...|++++|-+|..+.+.. .+. ..+.
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~----~~-----~~aD~vl~V~d~~~~~~~~----~l~---~~~~--- 216 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSEVA----VA-----NMVDTFVLLTLARTGDQLQ----GIK---KGVL--- 216 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHHHH----HH-----TTCSEEEEEEESSTTCTTT----TCC---TTSG---
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHHHH----HH-----HhCCEEEEEECCCCCccHH----HHH---HhHh---
Confidence 123344555666667899999999984443222 22 3889998888887664321 000 0011
Q ss_pred CCCCccEEEEccccccccchhhhhH------hHHHh-------CCCEEEEe--cCCCccccc
Q 007789 530 NPQLIDGILLTKFDTIDDKVGAALS------MVYVS-------GAPVMFVG--CGQSYTDLK 576 (589)
Q Consensus 530 ~~~~it~IIlTKlD~~d~k~G~als------~~~~~-------g~PI~fig--~Gq~v~DL~ 576 (589)
.....++++|+|.. ...+.... ..... +.||.++. +|+++.+|.
T Consensus 217 --~~p~ivVlNK~Dl~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~ 275 (355)
T 3p32_A 217 --ELADIVVVNKADGE-HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELW 275 (355)
T ss_dssp --GGCSEEEEECCCGG-GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHH
T ss_pred --hcCCEEEEECCCCc-ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHH
Confidence 12467999999985 33332111 11111 57888886 577776543
No 111
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.98 E-value=2.1e-09 Score=108.70 Aligned_cols=141 Identities=10% Similarity=0.053 Sum_probs=80.7
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC----------CcEEEEcccccCccchhhhhHhhhhccccceeccCC
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----------KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 446 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~----------~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~ 446 (589)
-+++|+ +++|+||||+|||||+..|++.+..- .+.|.+....- ...++......++..+
T Consensus 26 gl~~G~--i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~----~~~~~~~r~~~~g~~~----- 94 (279)
T 1nlf_A 26 NMVAGT--VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED----PPTAIHHRLHALGAHL----- 94 (279)
T ss_dssp TEETTS--EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS----CHHHHHHHHHHHHTTS-----
T ss_pred CccCCC--EEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC----CHHHHHHHHHHHHhhc-----
Confidence 356899 99999999999999999999976541 34454432211 0122221122222111
Q ss_pred CCCHHHHHHHHHHHhcccCCCccccc-cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC--CCCHHH--HHHHHHHH
Q 007789 447 EKDPAIVAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV--GNDAVD--QLSKFNQK 521 (589)
Q Consensus 447 ~~d~~~ia~~al~~a~l~~~d~vliD-TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~--GlD~~~--q~~~f~~~ 521 (589)
+. .....+++.+.+.......+. .|+++.+ ++++++. +|++|++ |||++ ++|... ....+...
T Consensus 95 --~~-~~~~~~~~~l~l~~~~~~~~~~ls~g~~~---~i~~l~~-----~~~livl-De~~~~~~~d~~~~~~~~~~~~~ 162 (279)
T 1nlf_A 95 --SA-EERQAVADGLLIQPLIGSLPNIMAPEWFD---GLKRAAE-----GRRLMVL-DTLRRFHIEEENASGPMAQVIGR 162 (279)
T ss_dssp --CH-HHHHHHHHHEEECCCTTSCCCTTSHHHHH---HHHHHHT-----TCSEEEE-ECGGGGCCSCTTCHHHHHHHHHH
T ss_pred --Ch-hhhhhccCceEEeecCCCCcccCCHHHHH---HHHHhcC-----CCCEEEE-CCHHHhcCCCcCchHHHHHHHHH
Confidence 11 223445555555443322333 3777643 4456663 8998888 99999 888632 22334455
Q ss_pred HHHhhcCCCCCCccEEEEcccc
Q 007789 522 LADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 522 l~~l~~~~~~~~it~IIlTKlD 543 (589)
|..++.. .++++|++++.-
T Consensus 163 L~~l~~~---~g~tvi~i~H~~ 181 (279)
T 1nlf_A 163 MEAIAAD---TGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHH---HCCEEEEEEEC-
T ss_pred HHHHHHH---cCCEEEEEecCC
Confidence 6665432 267888887743
No 112
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.96 E-value=1.4e-10 Score=112.02 Aligned_cols=35 Identities=31% Similarity=0.283 Sum_probs=31.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
+++|+||||||||||+++|+|+++ +.| |.+.+.++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 899999999999999999999999 788 87766544
No 113
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.95 E-value=5.5e-10 Score=117.56 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=40.8
Q ss_pred ccccc-ccccccCCceEEEEEecCCCcHHHHHHHHHHhH--hhCC----cE-EEEcccccC
Q 007789 370 ILRDV-HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHK----VS-VMMAACDTF 422 (589)
Q Consensus 370 iL~~I-s~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll--~~~~----Gk-V~l~~~Dt~ 422 (589)
.|+.+ .+.+++|+ ++.|+||||+||||++..|++.+ +|+. |+ |+|.+.+++
T Consensus 119 ~LD~lL~ggi~~G~--i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 119 SLDKLLGGGIETQA--ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp HHHHHHTSSEESSE--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred HHHHHhcCCCCCCe--EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 34444 36788999 99999999999999999999987 4443 68 777777765
No 114
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.94 E-value=2.7e-10 Score=113.17 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=62.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-----CcEEEEcccc-cCccchhhh-hHhhhhccccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACD-TFRSGAVEQ-LRTHARRLQVP 440 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-----~GkV~l~~~D-t~RigaveQ-L~~~~~~l~v~ 440 (589)
..+|++++|++.+|. +|+|+|||||||||+++.|++++-.. ...|.+...| .|+.-.+.+ ++.......
T Consensus 12 ~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~-- 87 (245)
T 2jeo_A 12 DLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYN-- 87 (245)
T ss_dssp -----------CCSE--EEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCC--
T ss_pred ceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCC--
Confidence 458999999999998 99999999999999999999977211 0122222222 222101111 110000000
Q ss_pred eeccCCCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 441 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 441 l~~~~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+......+ ...+.+.++.+. ......+...|+|+++++.+ +++. .+|+++|+ |||....+.
T Consensus 88 -~~~~~~~~-~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~-----~~~~~lil-Dg~~~~~~~ 148 (245)
T 2jeo_A 88 -FDHPDAFD-NDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVV-----YPADVVLF-EGILVFYSQ 148 (245)
T ss_dssp -TTSGGGBC-HHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEE-----CCCSEEEE-ECTTTTTSH
T ss_pred -CCCccccc-HHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEe-----cCCCEEEE-eCccccccH
Confidence 00000011 122334444331 22333334459999999865 2333 47888887 999877664
No 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.91 E-value=1.1e-10 Score=120.50 Aligned_cols=167 Identities=18% Similarity=0.143 Sum_probs=73.9
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHh-HhhCCcEEEEcccccC------ccchhhhhHhhhhccccce
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKVSVMMAACDTF------RSGAVEQLRTHARRLQVPI 441 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl-l~~~~GkV~l~~~Dt~------RigaveQL~~~~~~l~v~l 441 (589)
.++++++|. |+|+|+||||||||++.|+|. +.+..| |.+.+.++. .++++.|.......+ .+
T Consensus 12 ~~l~~~~~~--------I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l--tv 80 (301)
T 2qnr_A 12 SVKKGFEFT--------LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRL--TV 80 (301)
T ss_dssp ------CEE--------EEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEE--EE
T ss_pred EEEcCCCEE--------EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCc--ch
Confidence 467777764 499999999999999999997 778777 666554431 233443332111111 11
Q ss_pred ec-cCCCC--CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC-CCCHHHHHHH
Q 007789 442 FE-KGYEK--DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQLSK 517 (589)
Q Consensus 442 ~~-~~~~~--d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~-GlD~~~q~~~ 517 (589)
+. .+++. ...+....++.++. ..++..+-+.|||++|++.+++++ .+|++|||+. |+|+.+.
T Consensus 81 ~Dt~g~~~~~~~~e~~~~l~~~l~-~~~~~~~~~~sgg~rqrv~~ara~----------~ll~ldePt~~~Ld~~~~--- 146 (301)
T 2qnr_A 81 VDTPGYGDAINCRDCFKTIISYID-EQFERYLHDESGLNRRHIIDNRVH----------CCFYFISPFGHGLKPLDV--- 146 (301)
T ss_dssp EEEC-----------CTTHHHHHH-HHHHHHHHHHTSSCCTTCCCCCCC----------EEEEEECSSSSSCCHHHH---
T ss_pred hhhhhhhhhcCcHHHHHHHHHHHH-HHHHHHHHHhCHHhhhhhhhhhhh----------heeeeecCcccCCCHHHH---
Confidence 11 01110 00000001111110 011233445699999986655543 3556699998 5999863
Q ss_pred HHHHHHHhhcCCCCCCccEEEEccccccccc-h----hhhhHhHHHhCCCEEEE
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTKFDTIDDK-V----GAALSMVYVSGAPVMFV 566 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k-~----G~als~~~~~g~PI~fi 566 (589)
+.+..+.. ..+ -.+|++|+|....+ . -.+.......+.++..+
T Consensus 147 --~~l~~l~~---~~~-iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~ 194 (301)
T 2qnr_A 147 --AFMKAIHN---KVN-IVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHL 194 (301)
T ss_dssp --HHHHHHTT---TSC-EEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred --HHHHHHHh---cCC-EEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEec
Confidence 44444432 123 46899999986321 1 12233344556665443
No 116
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.90 E-value=3.4e-09 Score=110.68 Aligned_cols=66 Identities=12% Similarity=0.017 Sum_probs=44.3
Q ss_pred cccCccccccHHHHHHHHhhh-hhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 471 VDTAGRMQDNEPLMRALSKLI-YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 471 iDTSGg~qqr~~LaraL~kl~-~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..|||++|++.|++.|+-.. -..+|+++|| ||||+|||+..+...+ +.|..+... +.+.+++|+-
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lll-DEp~~~LD~~~~~~l~-~~l~~~~~~----~~~vi~~sH~ 313 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLIL-DEPTPYLDEERRRKLI-TIMERYLKK----IPQVILVSHD 313 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEE-ECCCTTCCHHHHHHHH-HHHHHTGGG----SSEEEEEESC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEE-ECCCCCCCHHHHHHHH-HHHHHHHhc----CCEEEEEECh
Confidence 345999999766554433100 1148999888 9999999998875444 666666432 4567777773
No 117
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.88 E-value=9.4e-10 Score=127.41 Aligned_cols=133 Identities=21% Similarity=0.204 Sum_probs=77.1
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-hCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 448 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~ 448 (589)
+++++++. ..|+ +++|+||||+||||+|+.|+|+.. .+.|.. ..+...+++.++|+. ..+++ .
T Consensus 597 vlndisl~-~~g~--i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~--vpa~~~~i~~~~~i~---~~~~~--------~ 660 (800)
T 1wb9_A 597 IANPLNLS-PQRR--MLIITGPNMGGKSTYMRQTALIALMAYIGSY--VPAQKVEIGPIDRIF---TRVGA--------A 660 (800)
T ss_dssp CCEEEEEC-SSSC--EEEEECCTTSSHHHHHHHHHHHHHHHTTTCC--BSSSEEEECCCCEEE---EEEC----------
T ss_pred eeeccccc-CCCc--EEEEECCCCCChHHHHHHHHHHHHHHhcCcc--cchhcccceeHHHHH---hhCCH--------H
Confidence 67888888 7888 999999999999999999999753 233311 111112344444311 11110 0
Q ss_pred CHHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~ 527 (589)
+ .+ .. + ..+ +++|++ ++..+. ...+|+++|| |||++|+|+.+....+...+..+..
T Consensus 661 d--~l-----~~-~--------~stf~~e~~~---~~~il~---~a~~psLlLL-DEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 661 D--DL-----AS-G--------RSTFMVEMTE---TANILH---NATEYSLVLM-DEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp -------------------------CHHHHHH---HHHHHH---HCCTTEEEEE-ESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred H--HH-----Hh-h--------hhhhhHHHHH---HHHHHH---hccCCCEEEE-ECCCCCCChhHHHHHHHHHHHHHHh
Confidence 0 00 00 0 011 333332 222221 1357888887 9999999988776555566766654
Q ss_pred CCCCCCccEEEEccccc
Q 007789 528 SPNPQLIDGILLTKFDT 544 (589)
Q Consensus 528 ~~~~~~it~IIlTKlD~ 544 (589)
. .+.+++++|+.-+
T Consensus 718 ~---~g~~vl~~TH~~e 731 (800)
T 1wb9_A 718 K---IKALTLFATHYFE 731 (800)
T ss_dssp T---TCCEEEEECSCGG
T ss_pred c---cCCeEEEEeCCHH
Confidence 2 2677888888544
No 118
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.84 E-value=3.7e-09 Score=111.70 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=32.1
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-CcEEEEc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMA 417 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-~GkV~l~ 417 (589)
..+|+ +++|+||||||||||++.|++++.++ +|.|...
T Consensus 120 ~~~~g--~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 120 DVPRG--LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp HCSSE--EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hCCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 34666 99999999999999999999999987 5666543
No 119
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.82 E-value=8.6e-10 Score=103.52 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=45.5
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
++++++|.+.+|+ +++|+||||||||||++.|+|++ |..|+|.+.+.++
T Consensus 22 ~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 22 AEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 6788999999999 99999999999999999999999 9999999887665
No 120
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.82 E-value=1.3e-09 Score=114.74 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=46.4
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
+.+|+++ |.+.+|+ +++|+||||||||||+++|+|++.++.|.|.+.|.+.
T Consensus 59 ~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG 109 (347)
T ss_dssp CHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH
T ss_pred CEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH
Confidence 4578888 9999999 9999999999999999999999999999998888653
No 121
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.82 E-value=6.7e-10 Score=106.02 Aligned_cols=145 Identities=15% Similarity=0.043 Sum_probs=75.5
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH-----hhCCcEEEEcc-------cccC-ccchh--------
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-----LQHKVSVMMAA-------CDTF-RSGAV-------- 427 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll-----~~~~GkV~l~~-------~Dt~-Rigav-------- 427 (589)
.++++ +.+.+|. .++|+|+||||||||++.|+|.. .|+.|.+.+.+ ..++ -+|..
T Consensus 16 ~~l~~--~~~~~~~--~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 91 (210)
T 1pui_A 16 PDIRH--LPSDTGI--EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEM 91 (210)
T ss_dssp SSGGG--SSCSCSE--EEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CC
T ss_pred CCHhH--CCCCCCc--EEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHH
Confidence 35666 6677777 99999999999999999999977 66667654321 1111 02211
Q ss_pred -hh----hHhhhh---ccc-cc-eeccCCCCCHH-HHHHHHHHHhcccCCCcc----cccc-Ccccccc-HHHHHHHHhh
Q 007789 428 -EQ----LRTHAR---RLQ-VP-IFEKGYEKDPA-IVAKEAIQEATRNGSDVV----LVDT-AGRMQDN-EPLMRALSKL 490 (589)
Q Consensus 428 -eQ----L~~~~~---~l~-v~-l~~~~~~~d~~-~ia~~al~~a~l~~~d~v----liDT-SGg~qqr-~~LaraL~kl 490 (589)
++ +..+.+ ... +- ++......... ..+...+.. .+...+ -+|. +++++++ ...++++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~- 167 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVL- 167 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHH-
Confidence 11 111111 111 11 11111111221 122233332 233322 2455 7888777 677777774
Q ss_pred hhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Q 007789 491 IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 527 (589)
Q Consensus 491 ~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~ 527 (589)
+|...++ |||++++|.......| +.|..+..
T Consensus 168 ----~~~~~~~-~~~~Sal~~~~~~~l~-~~l~~~~~ 198 (210)
T 1pui_A 168 ----AFNGDVQ-VETFSSLKKQGVDKLR-QKLDTWFS 198 (210)
T ss_dssp ----GGCSCEE-EEECBTTTTBSHHHHH-HHHHHHHC
T ss_pred ----hcCCCCc-eEEEeecCCCCHHHHH-HHHHHHHh
Confidence 6665566 9999999998776555 45555443
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.80 E-value=2.4e-09 Score=112.76 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=39.9
Q ss_pred ccccccccccc--CCceEEEEEecCCCcHHHHHHHHHHhHhhCC----cEEEE
Q 007789 370 ILRDVHAAKEQ--RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK----VSVMM 416 (589)
Q Consensus 370 iL~~Is~~i~~--Gep~iI~LVGpNGvGKTTlLakLAgll~~~~----GkV~l 416 (589)
+...|++.+.+ |+ .++|+|+||||||||++.|+|++.++. |++.+
T Consensus 157 ~~~~v~~~v~~~lg~--k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 157 YWKFIPKEARPFFAK--TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGGSCTTTGGGTCE--EEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred ChhhCCHHHHHhhhC--eEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 34568888888 98 999999999999999999999999988 87765
No 123
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.80 E-value=2.8e-08 Score=93.42 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=29.2
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCc
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 412 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G 412 (589)
.+..|+ .++|+||||+||||+++.|++.+.+..|
T Consensus 34 ~~~~g~--~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 34 NPEEGK--GLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp CGGGCC--EEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred cccCCC--EEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 344677 9999999999999999999999986555
No 124
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.76 E-value=3.1e-08 Score=95.11 Aligned_cols=139 Identities=17% Similarity=0.135 Sum_probs=77.5
Q ss_pred cccccccc-ccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc-CccchhhhhHhhhhccccceeccCC
Q 007789 369 DILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-FRSGAVEQLRTHARRLQVPIFEKGY 446 (589)
Q Consensus 369 ~iL~~Is~-~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt-~RigaveQL~~~~~~l~v~l~~~~~ 446 (589)
..|+.+.. -+++|+ +++|+|+||+||||++..|++ +.++.|.+...+. +.. .++..+.+.++
T Consensus 7 ~~LD~~l~Ggi~~G~--~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~---~~~~~~~~~~~-------- 70 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGV--LTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSP---ERLVQMAETRG-------- 70 (220)
T ss_dssp HHHHHHTTSSBCTTS--EEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCH---HHHHHHHHTTT--------
T ss_pred HHHHHhhcCCCcCCE--EEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCH---HHHHHHHHhcC--------
Confidence 34555543 567899 999999999999999999999 4456666655432 221 22222222222
Q ss_pred CCCHHHHHHHHHHHhcccCCCccccccCccccc--cHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHH-------HHHH
Q 007789 447 EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQD--NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD-------QLSK 517 (589)
Q Consensus 447 ~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qq--r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~-------q~~~ 517 (589)
.++.. .++. ..+.+.++++++ ....++++.. . +|+++++ |||++++|+.. ....
T Consensus 71 -~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~---~-~~~llii-D~~~~~l~~~~~~~~~~~~~~~ 133 (220)
T 2cvh_A 71 -LNPEE----ALSR-------FILFTPSDFKEQRRVIGSLKKTVD---S-NFALVVV-DSITAHYRAEENRSGLIAELSR 133 (220)
T ss_dssp -CCHHH----HHHH-------EEEECCTTTSHHHHHHHHHHHHCC---T-TEEEEEE-ECCCCCTTGGGGSSTTHHHHHH
T ss_pred -CChHH----Hhhc-------EEEEecCCHHHHHHHHHHHHHHhh---c-CCCEEEE-cCcHHHhhhcCchHHHHHHHHH
Confidence 12211 1221 122344555443 3333444432 2 5888777 99999998632 1122
Q ss_pred HHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
+...|..++.. .+++.++++..-
T Consensus 134 ~~~~L~~l~~~---~~~~vi~~~h~~ 156 (220)
T 2cvh_A 134 QLQVLLWIARK---HNIPVIVINQVH 156 (220)
T ss_dssp HHHHHHHHHHH---HTCCEEEEECSS
T ss_pred HHHHHHHHHHH---cCCEEEEEeeEE
Confidence 22335555432 267778887753
No 125
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.75 E-value=2e-10 Score=110.71 Aligned_cols=128 Identities=19% Similarity=0.123 Sum_probs=71.2
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHH
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 459 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~ 459 (589)
+|+ +|+|+|||||||||+++.|++++.| .|.+...|.+-... ..+ +..++..+.+ . .........+.++++
T Consensus 5 ~~~--~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~-~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~l~ 75 (211)
T 3asz_A 5 KPF--VIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDL-GHL-PLEERLRVNY-D-HPDAFDLALYLEHAQ 75 (211)
T ss_dssp CCE--EEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCC-TTS-CHHHHHHSCT-T-SGGGBCHHHHHHHHH
T ss_pred CcE--EEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCc-ccc-cHHHhcCCCC-C-ChhhhhHHHHHHHHH
Confidence 555 9999999999999999999999876 46665555432100 000 0111111111 0 001111234455666
Q ss_pred HhcccCC-CccccccCcccc----ccHHHHHHHHhhhhhcCCCEEEEEecCCCC-------CCHHHHHHHHHHHHH
Q 007789 460 EATRNGS-DVVLVDTAGRMQ----DNEPLMRALSKLIYLNNPDLVLFVGEALVG-------NDAVDQLSKFNQKLA 523 (589)
Q Consensus 460 ~a~l~~~-d~vliDTSGg~q----qr~~LaraL~kl~~~~~PdlILLVDEPt~G-------lD~~~q~~~f~~~l~ 523 (589)
.+++... .....++++|++ +++.+++++. .+|.++++ |||+.+ +|+....+.. +.+.
T Consensus 76 ~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li-----~~~~ll~~-de~~~~~~d~~i~ld~~~~~~~~-r~l~ 144 (211)
T 3asz_A 76 ALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVI-----LEGILVLY-PKELRDLMDLKVFVDADADERFI-RRLK 144 (211)
T ss_dssp HHHTTCCEEECCEETTTTEECSSCEEECCCSEEE-----EESTTTTS-SHHHHTTCSEEEEEECCHHHHHH-HHHH
T ss_pred HHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEE-----Eeehhhcc-CHHHHHhcCEEEEEeCCHHHHHH-HHHH
Confidence 6655433 334566788875 3434444444 36666665 899998 8876543333 3443
No 126
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.73 E-value=3.4e-09 Score=114.91 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=46.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 419 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~ 419 (589)
+.+|+++ |.+.+|+ +++|+||||||||||++.|+|++.++.|.|.+.|.
T Consensus 145 ~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 4578899 9999999 99999999999999999999999999999999887
No 127
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.71 E-value=2e-08 Score=106.52 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=39.3
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-CcEEEEcccc
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACD 420 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-~GkV~l~~~D 420 (589)
+|++++ +.+|+ +++|+||||||||||+++|++++.++ .|+|.+.+.+
T Consensus 127 ~l~~l~--~~~g~--~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 127 KVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp SHHHHT--TSSSE--EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred HHHHHh--hcCCC--EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 445544 45777 99999999999999999999999998 8999877644
No 128
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.68 E-value=3.2e-08 Score=104.67 Aligned_cols=61 Identities=10% Similarity=0.029 Sum_probs=44.5
Q ss_pred cCccccccHHHHHHHHh--hhh--hcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 473 TAGRMQDNEPLMRALSK--LIY--LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 473 TSGg~qqr~~LaraL~k--l~~--~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
.||||+|++.|+++|+. +++ ..+|+++|| ||||++||+..+...+ +.+..+ ..+.|++|..
T Consensus 266 lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLL-DEp~s~LD~~~~~~l~-~~l~~~-------~qt~i~~th~ 330 (359)
T 2o5v_A 266 ASRGEGRTVALALRRAELELLREKFGEDPVLLL-DDFTAELDPHRRQYLL-DLAASV-------PQAIVTGTEL 330 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEE-CCGGGCCCHHHHHHHH-HHHHHS-------SEEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEE-eCccccCCHHHHHHHH-HHHHhc-------CcEEEEEEec
Confidence 49999999999999984 221 148998888 9999999998875444 445433 1466777763
No 129
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=4e-09 Score=113.74 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=70.1
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCc--EEEEcccccC---ccchhhhhHhhhhccccceec
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV--SVMMAACDTF---RSGAVEQLRTHARRLQVPIFE 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G--kV~l~~~Dt~---RigaveQL~~~~~~l~v~l~~ 443 (589)
.++++++|. |+|||+||||||||++.|+|...+..| .+.+....+. .++++.|.......+ .+..
T Consensus 25 ~vl~~vsf~--------I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~L--tv~D 94 (418)
T 2qag_C 25 SVKRGFEFT--------LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL--TIVD 94 (418)
T ss_dssp TCC-CCCEE--------EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEE--EEEE
T ss_pred EEecCCCEE--------EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccce--eeee
Confidence 466777664 499999999999999999998764332 1111111121 245555533221111 1111
Q ss_pred -cCCCC--CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCC--EEEEEecCC-CCCCHHHHHHH
Q 007789 444 -KGYEK--DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEAL-VGNDAVDQLSK 517 (589)
Q Consensus 444 -~~~~~--d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~Pd--lILLVDEPt-~GlD~~~q~~~ 517 (589)
.+++. +.......+++++.. .....+++++.|++++. .+|+ ++|++|||| .|+|+.+.
T Consensus 95 t~g~~~~~~~~~~~~~i~~~i~~--------~~~~~l~qr~~IaRal~-----~d~~~~vlL~ldePt~~~L~~~d~--- 158 (418)
T 2qag_C 95 TPGFGDAVDNSNCWQPVIDYIDS--------KFEDYLNAESRVNRRQM-----PDNRVQCCLYFIAPSGHGLKPLDI--- 158 (418)
T ss_dssp CC-----------CHHHHHHHHH--------HHHHHTTTSCC-CCCCC-----CCC-CCEEEEECCC-CCSCCHHHH---
T ss_pred chhhhhhccchhhHHHHHHHHHH--------HHHHHHHHHHHHHHHhc-----cCCCeeEEEEEecCcccCCCHHHH---
Confidence 01111 000000111111110 01234556667777765 3676 455559999 69999873
Q ss_pred HHHHHHHhhcCCCCCCccEEEEccccccc
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTKFDTID 546 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTKlD~~d 546 (589)
..+..+.. ...-.+|++|+|...
T Consensus 159 --~~lk~L~~----~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 159 --EFMKRLHE----KVNIIPLIAKADTLT 181 (418)
T ss_dssp --HHHHHHTT----TSEEEEEEESTTSSC
T ss_pred --HHHHHHhc----cCcEEEEEEcccCcc
Confidence 33444432 134578999999863
No 130
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.67 E-value=2e-08 Score=97.88 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=71.3
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHh--Hhh-----CCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCC
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQ-----HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 449 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgl--l~~-----~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d 449 (589)
-+++|+ +++|+||||+||||++..|++. +.+ ..+.+.+.+.+.+.. +++..+.+.+++.
T Consensus 20 gi~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~---~~~~~~~~~~g~~--------- 85 (243)
T 1n0w_A 20 GIETGS--ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP---ERLLAVAERYGLS--------- 85 (243)
T ss_dssp SEETTS--EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH---HHHHHHHHHTTCC---------
T ss_pred CCcCCe--EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCH---HHHHHHHHHcCCC---------
Confidence 356888 9999999999999999999993 444 456666666654332 2222233333321
Q ss_pred HHHHHHHHHHHhcccCCCcccccc-CccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH-------H--H--HHH
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV-------D--Q--LSK 517 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDT-SGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~-------~--q--~~~ 517 (589)
+.. .++.+ .+... ++.+ ...+...+..++...+|+++++ |||+..+|+. . + ...
T Consensus 86 ~~~----~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~llii-D~~~~~~~~~~~~~~~~~~r~~~~~~ 151 (243)
T 1n0w_A 86 GSD----VLDNV-------AYARAFNTDH--QTQLLYQASAMMVESRYALLIV-DSATALYRTDYSGRGELSARQMHLAR 151 (243)
T ss_dssp HHH----HHHTE-------EEEECCSHHH--HHHHHHHHHHHHHHSCEEEEEE-ETSSGGGC-------CHHHHHHHHHH
T ss_pred HHH----HhhCe-------EEEecCCHHH--HHHHHHHHHHHHhcCCceEEEE-eCchHHHHHHhcCCccHHHHHHHHHH
Confidence 211 11111 11111 1111 1122223333444468888887 9999999874 2 1 122
Q ss_pred HHHHHHHhhcCCCCCCccEEEEccc
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
+...|..++. ..++++++++..
T Consensus 152 ~~~~l~~~~~---~~~~tvi~~~h~ 173 (243)
T 1n0w_A 152 FLRMLLRLAD---EFGVAVVITNQV 173 (243)
T ss_dssp HHHHHHHHHH---HHCCEEEEEC--
T ss_pred HHHHHHHHHH---HcCCEEEEEeee
Confidence 2233444433 237787887774
No 131
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.66 E-value=3.8e-09 Score=118.94 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=28.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhh-CCcEEEEccccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDT 421 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~-~~GkV~l~~~Dt 421 (589)
.++|||+|||||||+|+.|+|++.| +.|.|.+.+.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 4999999999999999999999988 799999888774
No 132
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.62 E-value=2.9e-09 Score=101.26 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=60.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhC---CcEEEEcccccCccc--hhhhhHh-hhh----cc--ccceeccCCCCCHHH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTFRSG--AVEQLRT-HAR----RL--QVPIFEKGYEKDPAI 452 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~---~GkV~l~~~Dt~Rig--aveQL~~-~~~----~l--~v~l~~~~~~~d~~~ 452 (589)
+++|+|++||||||+++.|++++.++ .|.|.+.+.+++.+. ..+.++. ... .+ +..++... .+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~--~~~~~ 81 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR--VSEEE 81 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE--CCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec--CChhh
Confidence 89999999999999999999999998 689998887754322 0111220 011 00 00011111 12222
Q ss_pred --HHHHHHHH-hcccCCCcccccc-CccccccHHHHHHHHh
Q 007789 453 --VAKEAIQE-ATRNGSDVVLVDT-AGRMQDNEPLMRALSK 489 (589)
Q Consensus 453 --ia~~al~~-a~l~~~d~vliDT-SGg~qqr~~LaraL~k 489 (589)
-+.+.+.. + .++|..+++. |||++||+.|+|++..
T Consensus 82 ~a~l~~~i~~~l--~g~dt~i~EglSgGq~qri~lARall~ 120 (171)
T 2f1r_A 82 GNDLDWIYERYL--SDYDLVITEGFSKAGKDRIVVVKKPEE 120 (171)
T ss_dssp HTCHHHHHHHHT--TTCSEEEEESCGGGCCCEEEECSSGGG
T ss_pred hhCHHHHHHhhC--CCCCEEEECCcCCCCCcEEEEEecccC
Confidence 23444444 3 3788888876 9999999999999986
No 133
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.58 E-value=2.8e-08 Score=107.35 Aligned_cols=179 Identities=13% Similarity=0.044 Sum_probs=87.6
Q ss_pred ccccccccccCCceE--EEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc--cccc-CccchhhhhHhhhhccccc-eecc
Q 007789 371 LRDVHAAKEQRKPYV--VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--ACDT-FRSGAVEQLRTHARRLQVP-IFEK 444 (589)
Q Consensus 371 L~~Is~~i~~Gep~i--I~LVGpNGvGKTTlLakLAgll~~~~GkV~l~--~~Dt-~RigaveQL~~~~~~l~v~-l~~~ 444 (589)
|+++++.+.+|+ + ++|||+||||||||++.|+|+.. .|..... ...+ .+++++.|...+...+.+. ...-
T Consensus 30 L~~vsl~i~~Ge--i~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 30 DQLVNKSVSQGF--CFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp HHHHHHSCC-CC--EEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred cCCCceEecCCC--eeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 889999999999 8 99999999999999999999742 1111100 0011 1367777754332222111 0000
Q ss_pred CCCCCH-----------HHHHHHHHHHh-ccc-------CCC----c-cccccC-ccccccHHHHHHHHhhhhhcCCCEE
Q 007789 445 GYEKDP-----------AIVAKEAIQEA-TRN-------GSD----V-VLVDTA-GRMQDNEPLMRALSKLIYLNNPDLV 499 (589)
Q Consensus 445 ~~~~d~-----------~~ia~~al~~a-~l~-------~~d----~-vliDTS-Gg~qqr~~LaraL~kl~~~~~PdlI 499 (589)
+...+. ...+...+... +.. +.+ + .++|+. |-...++.+|++|. ..+.+|
T Consensus 106 g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-----~~~~vI 180 (427)
T 2qag_B 106 GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-----SKVNII 180 (427)
T ss_dssp CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-----SCSEEE
T ss_pred hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-----hCCCEE
Confidence 111111 11122223322 211 111 1 123442 33334567777775 366666
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHH-hhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEEEec
Q 007789 500 LFVGEALVGNDAVDQLSKFNQKLAD-LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGC 568 (589)
Q Consensus 500 LLVDEPt~GlD~~~q~~~f~~~l~~-l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~fig~ 568 (589)
++ ++|+..+.+......+ +.+.. +... ++..+.++--|+.... .+-......|-+.||.
T Consensus 181 ~V-i~KtD~Lt~~E~~~l~-~~I~~~L~~~----gi~I~~is~~d~~~~~----~~~~~~~~~PFavvgs 240 (427)
T 2qag_B 181 PI-IAKADAISKSELTKFK-IKITSELVSN----GVQIYQFPTDDESVAE----INGTMNAHLPFAVIGS 240 (427)
T ss_dssp EE-ESCGGGSCHHHHHHHH-HHHHHHHBTT----BCCCCCCC-----CCS----HHHHHTTC-CCBCCC-
T ss_pred EE-EcchhccchHHHHHHH-HHHHHHHHHc----CCcEEecCCCchhHHH----HHhhhcCCCCeEEECC
Confidence 65 9999999887654444 55554 5443 6666777754432111 1222234567555553
No 134
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.56 E-value=6.4e-08 Score=95.34 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=34.0
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHhHhh--CCcEEEEcccc
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACD 420 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~--~~GkV~l~~~D 420 (589)
..++|+ +++|+||||||||||+++|+|+++| ..|.|.+.+.+
T Consensus 12 ~~~~G~--ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 12 HMAQGT--LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 55 (219)
T ss_dssp ---CCC--EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred cCCCCc--EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence 456899 9999999999999999999999885 56777776644
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.52 E-value=1.5e-07 Score=86.97 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=27.1
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCC
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK 411 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~ 411 (589)
+|+ .++|+||||+||||+++.|++.+.+.+
T Consensus 35 ~g~--~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 35 HGQ--FIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp CCS--EEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 677 999999999999999999999988753
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.51 E-value=2.2e-08 Score=102.84 Aligned_cols=125 Identities=15% Similarity=0.168 Sum_probs=69.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHhHhhCC---cEEEEcccccCccchhhhhHhhh-hccccceec-cC-CCCCHHHHH
Q 007789 381 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK---VSVMMAACDTFRSGAVEQLRTHA-RRLQVPIFE-KG-YEKDPAIVA 454 (589)
Q Consensus 381 Gep~iI~LVGpNGvGKTTlLakLAgll~~~~---GkV~l~~~Dt~RigaveQL~~~~-~~l~v~l~~-~~-~~~d~~~ia 454 (589)
++|.+|+|+|++||||||++++|++++.+.+ ..+.+...|.|-...- ++..+. ..-+-+++. .+ ........+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~-~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHE-DQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHH-HHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChH-HHHHHhccccccchhhhccCcchhHHHHH
Confidence 3466999999999999999999999998742 1344546776532211 111110 000001111 01 111112334
Q ss_pred HHHHHHhccc------C---CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHH
Q 007789 455 KEAIQEATRN------G---SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 512 (589)
Q Consensus 455 ~~al~~a~l~------~---~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 512 (589)
.+.+..+... . ....-..+|||++++++++++.. .+|+++|| ||+++++|+.
T Consensus 108 ~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~-----~~~~IlIl-EG~~~~ld~~ 168 (290)
T 1odf_A 108 QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIK-----LPVDIFIL-EGWFLGFNPI 168 (290)
T ss_dssp HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEE-----SSCSEEEE-EESSTTCCCC
T ss_pred HHHHHHhhccCccccCcceeeccCccccCCccccccccccceE-----cCCCEEEE-eCccccCCcc
Confidence 4455554332 0 01111234999999987764333 26888887 9999999974
No 137
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.50 E-value=3.3e-08 Score=108.35 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=48.1
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
..+|++++|.+++ + +++|+|||||||||||++|+|++.|+.|+|.+.+.++.
T Consensus 17 ~~~l~~vsl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-L--VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-S--EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-c--eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 3578999999999 8 99999999999999999999999999999999988763
No 138
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.43 E-value=2.4e-08 Score=105.57 Aligned_cols=112 Identities=15% Similarity=0.023 Sum_probs=65.3
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh-hCCcEEEEc-cccc-----CccchhhhhHhhhhccccceec
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMA-ACDT-----FRSGAVEQLRTHARRLQVPIFE 443 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~-~~~GkV~l~-~~Dt-----~RigaveQL~~~~~~l~v~l~~ 443 (589)
++++++.+ .|+ +++|+||||||||||++.|+|.+. +..|.|.+. +.+. .++++++|...+....++.-+.
T Consensus 206 l~~L~~~~-~G~--~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEAL-TGR--ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHHH-TTS--EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHhc-CCC--EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 44555543 688 999999999999999999999999 999999876 4321 2366776644333332221111
Q ss_pred cCCCCCHHH---HHHHHHHHhcccCCCccc-cccCccccccHHHHHHH
Q 007789 444 KGYEKDPAI---VAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRAL 487 (589)
Q Consensus 444 ~~~~~d~~~---ia~~al~~a~l~~~d~vl-iDTSGg~qqr~~LaraL 487 (589)
....+... .+.++++.+++..+.... ...| |++++++|++++
T Consensus 283 -l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 -LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp -CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred -hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 11222322 234455566665544333 4458 999999998754
No 139
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.39 E-value=4.1e-08 Score=97.25 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=32.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHH---HhHhhCCcEEEEcccc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVA---YWLLQHKVSVMMAACD 420 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLA---gll~~~~GkV~l~~~D 420 (589)
|.+|+|+|||||||||+++.|+ |+..++.|+|.+.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 3499999999999999999999 8888888887766543
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=6.1e-07 Score=92.71 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=27.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH-hHhhCCcEEEEccccc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY-WLLQHKVSVMMAACDT 421 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg-ll~~~~GkV~l~~~Dt 421 (589)
|. +.|+||||+||||+++.|++ ++.+..|.|.+.+.+.
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 44 89999999999999999999 6788889988877553
No 141
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.37 E-value=1.1e-07 Score=100.33 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=44.9
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
+++++++.+.+|+ +++|+||||||||||++.|++++.|+.|.|.+.+.+
T Consensus 164 ~~~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~ 212 (361)
T 2gza_A 164 YMSFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP 212 (361)
T ss_dssp HHHHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS
T ss_pred HHHHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc
Confidence 4578889999999 999999999999999999999999999999998654
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.36 E-value=4.1e-07 Score=97.52 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=73.5
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHH--HhHhhC-----CcEEEEcccccCccchhhhhHhhhhccccceeccCCCCC
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVA--YWLLQH-----KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 449 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLA--gll~~~-----~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d 449 (589)
-+++|+ +++|+||||+|||||+..|+ +.+++. ++.|+|.+.+.++.. .++.+++.+++.
T Consensus 174 GI~~Ge--i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~---rl~~~a~~~gl~--------- 239 (400)
T 3lda_A 174 GVETGS--ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV---RLVSIAQRFGLD--------- 239 (400)
T ss_dssp SEETTS--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH---HHHHHHHHTTCC---------
T ss_pred CcCCCc--EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHH---HHHHHHHHcCCC---------
Confidence 356889 99999999999999999765 344432 335666666665432 233334444432
Q ss_pred HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH--------H---HHH
Q 007789 450 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ--------L---SKF 518 (589)
Q Consensus 450 ~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q--------~---~~f 518 (589)
+.. +++. +.+.......++...+.+ +..++...+|++|++ |+|+..++.... . ..+
T Consensus 240 ~~~----vlen-------i~~~~~~~~~~~~~~l~~-~~~~l~~~~~~llVI-Ds~t~~~~~~~sg~g~l~~Rq~~l~~i 306 (400)
T 3lda_A 240 PDD----ALNN-------VAYARAYNADHQLRLLDA-AAQMMSESRFSLIVV-DSVMALYRTDFSGRGELSARQMHLAKF 306 (400)
T ss_dssp HHH----HHHT-------EEEEECCSHHHHHHHHHH-HHHHHHHSCEEEEEE-ETGGGGCC------CCHHHHHHHHHHH
T ss_pred hHh----Hhhc-------EEEeccCChHHHHHHHHH-HHHHHHhcCCceEEe-cchhhhCchhhcCccchHHHHHHHHHH
Confidence 211 1211 111122222222222222 222333457888887 999998885321 1 222
Q ss_pred HHHHHHhhcCCCCCCccEEEEccc
Q 007789 519 NQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 519 ~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...|..++.. .++++|++|+.
T Consensus 307 l~~L~~lake---~gitVIlv~Hv 327 (400)
T 3lda_A 307 MRALQRLADQ---FGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHH---HCCEEEEEEEC
T ss_pred HHHHHHHHHH---cCCEEEEEEee
Confidence 2444445433 37888999886
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.34 E-value=1.8e-07 Score=96.35 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=36.3
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHh--hCCcEEEEcccccC
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTF 422 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~--~~~GkV~l~~~Dt~ 422 (589)
..|+ +|+|+|+|||||||++++|++++. |++|+|.+...|-+
T Consensus 78 ~~g~--iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPY--IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCE--EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCE--EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 3455 999999999999999999999998 89999999655543
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.33 E-value=4.3e-06 Score=81.30 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=37.8
Q ss_pred ccccc-ccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 370 ILRDV-HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 370 iL~~I-s~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.|+.+ .--+++|+ +++|+|+||+||||++..++....+.++.|.+.+.+.
T Consensus 11 ~LD~~l~gGl~~G~--~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 11 GVDEILHGGIPERN--VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp THHHHTTTSEETTC--EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred hHHHHcCCCCCCCc--EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 34444 33467888 9999999999999998888776666677787776553
No 145
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.33 E-value=5.5e-07 Score=94.50 Aligned_cols=150 Identities=20% Similarity=0.199 Sum_probs=84.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..++|+|++|||||||++.|++... .+.... +. .....+.. +.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~------~~~~~~-~~----------t~~~~~~~-------------------~~ 210 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKP------EIASYP-FT----------TRGINVGQ-------------------FE 210 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCC------EEECCT-TC----------SSCEEEEE-------------------EE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC------ccCCCC-Ce----------eeceeEEE-------------------EE
Confidence 45999999999999999999976321 111110 00 00000000 00
Q ss_pred ccCCCccccccCccccccH----HH-HHHHHhhhhhcCCCEEEEE-e-cCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 007789 463 RNGSDVVLVDTAGRMQDNE----PL-MRALSKLIYLNNPDLVLFV-G-EALVGNDAVDQLSKFNQKLADLSSSPNPQLID 535 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~----~L-araL~kl~~~~~PdlILLV-D-EPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it 535 (589)
..+....++||+|...... .+ .+++..+. ..++.+|+| | ++..|+|...+...+.. +..+.. . ...
T Consensus 211 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~--~~ad~illV~D~s~~~~~~~~~~~~~~~~-i~~~~~-~---~pi 283 (357)
T 2e87_A 211 DGYFRYQIIDTPGLLDRPISERNEIEKQAILALR--YLGNLIIYIFDPSEHCGFPLEEQIHLFEE-VHGEFK-D---LPF 283 (357)
T ss_dssp ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG--GTCSEEEEEECTTCTTSSCHHHHHHHHHH-HHHHTT-T---SCE
T ss_pred ecCceEEEEeCCCccccchhhhhHHHHHHHHHHH--hcCCEEEEEEeCCccccCCHHHHHHHHHH-HHHhcC-C---CCE
Confidence 1123467788888644321 11 12222211 245555544 6 66777788877655533 333221 1 334
Q ss_pred EEEEccccccccchhh--hhHhHHHhCCCEEEEe--cCCCccccc
Q 007789 536 GILLTKFDTIDDKVGA--ALSMVYVSGAPVMFVG--CGQSYTDLK 576 (589)
Q Consensus 536 ~IIlTKlD~~d~k~G~--als~~~~~g~PI~fig--~Gq~v~DL~ 576 (589)
.+++||+|.. ..... +.......+.|+.+++ +|+++++|.
T Consensus 284 ilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~ 327 (357)
T 2e87_A 284 LVVINKIDVA-DEENIKRLEKFVKEKGLNPIKISALKGTGIDLVK 327 (357)
T ss_dssp EEEECCTTTC-CHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHH
T ss_pred EEEEECcccC-ChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHH
Confidence 6889999986 33332 4445556688999998 898887664
No 146
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.32 E-value=3.2e-07 Score=95.65 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=39.4
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHh--hCCcEEEEcccccCcc
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFRS 424 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~--~~~GkV~l~~~Dt~Ri 424 (589)
.+.|++|+|+|||||||||++++|++++. +.+|.|.+...|-|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 45688999999999999999999999987 4678999999988653
No 147
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.31 E-value=9e-06 Score=77.03 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=94.4
Q ss_pred EEEEEe-cCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 385 VVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 385 iI~LVG-pNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
+|+|++ .-|+||||+...||..+...+.+|++..+|...... .... ....++++..... ....+.++.+.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~--~~~~-~~~~~~~~~~~~~-----~~l~~~l~~l~- 73 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT--NWSK-AGKAAFDVFTAAS-----EKDVYGIRKDL- 73 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--HHHT-TSCCSSEEEECCS-----HHHHHTHHHHT-
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH--HHHh-cCCCCCcEEecCc-----HHHHHHHHHhc-
Confidence 788884 567999999999999998888899999999633110 0000 1112344433211 33445555543
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
..+|++++|++++.. .....++. ..|.++++-+|...- . ....+.+.+..+........+ ++|+|+++
T Consensus 74 ~~yD~viiD~~~~~~--~~~~~~l~------~ad~viiv~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~ 141 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS--VITSAAVM------VSDLVIIPVTPSPLD--F-SAAGSVVTVLEAQAYSRKVEA-RFLITRKI 141 (206)
T ss_dssp TTSSEEEEECCSSSS--HHHHHHHH------HCSEEEEEECSCTTT--H-HHHHHHHHHHTTSCGGGCCEE-EEEECSBC
T ss_pred CCCCEEEEECCCCCC--HHHHHHHH------HCCEEEEEecCCHHH--H-HHHHHHHHHHHHHHhCCCCcE-EEEEeccC
Confidence 359999999988773 22233333 567888877775433 2 233333555444322222345 89999999
Q ss_pred ccccchhhhhHhHHHhCCCEE
Q 007789 544 TIDDKVGAALSMVYVSGAPVM 564 (589)
Q Consensus 544 ~~d~k~G~als~~~~~g~PI~ 564 (589)
.-......+.......+.|+.
T Consensus 142 ~~~~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 142 EMATMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp TTEEEEHHHHHHHHHHTCCBC
T ss_pred CCchHHHHHHHHHHHcCCcee
Confidence 642333445555566677754
No 148
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.30 E-value=1.3e-06 Score=86.46 Aligned_cols=155 Identities=21% Similarity=0.136 Sum_probs=84.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccch----------hhhhHhhhh-ccccc--eecc-CCCC
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA----------VEQLRTHAR-RLQVP--IFEK-GYEK 448 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Riga----------veQL~~~~~-~l~v~--l~~~-~~~~ 448 (589)
+.+++++|..||||||++..|+..+. .+.+|++...|...... ....+.... .++.. +... ....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 56999999999999999999999888 88899999988732110 001111000 00000 0000 0000
Q ss_pred CHHHHHHHHHHHhcccCCCccccccCccccccH--HHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhh
Q 007789 449 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNE--PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 526 (589)
Q Consensus 449 d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~--~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~ 526 (589)
.......+.++.+. .+++++++||+|...... .+...+...+ .+ +++++|-++....++.+....+...+....
T Consensus 93 ~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 93 EKFNEYLNKILRLE-KENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp TTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh-hcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 01122334444433 348999999999764321 1122222211 35 888888888888887654332211111111
Q ss_pred cCCCCCCccEEEEcccccc
Q 007789 527 SSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 527 ~~~~~~~it~IIlTKlD~~ 545 (589)
... ....+++||+|..
T Consensus 169 ~~~---~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 169 RLG---ATTIPALNKVDLL 184 (262)
T ss_dssp HHT---SCEEEEECCGGGC
T ss_pred ccC---CCeEEEEeccccc
Confidence 111 2346899999986
No 149
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.29 E-value=7.9e-08 Score=99.01 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=62.7
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEE---cccccC---------ccchhhhhHhh----------hh
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDTF---------RSGAVEQLRTH----------AR 435 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l---~~~Dt~---------RigaveQL~~~----------~~ 435 (589)
+..|+ +++|+||||||||||++.|+ ++.+..|+|.+ .|.++. ++|++.|.+.+ .+
T Consensus 162 ~l~G~--i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e 238 (302)
T 2yv5_A 162 YLEGF--ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPR 238 (302)
T ss_dssp HTTTC--EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGG
T ss_pred hccCc--EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHH
Confidence 34678 99999999999999999999 99999999999 776652 25666654311 12
Q ss_pred cc--ccc----e---ecc-CCCCCHHHHHHHHHHHhcccC--CCccccccCccccccHHHHH
Q 007789 436 RL--QVP----I---FEK-GYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMR 485 (589)
Q Consensus 436 ~l--~v~----l---~~~-~~~~d~~~ia~~al~~a~l~~--~d~vliDTSGg~qqr~~Lar 485 (589)
++ .++ + +.. ....++...+.++++.+++.. ++..+-..||..++.++|+|
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 122 0 111 122344456778888877753 23333334876667777765
No 150
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.28 E-value=3.8e-07 Score=86.71 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=36.8
Q ss_pred cccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC---------ccchhhhhHhh
Q 007789 376 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH 433 (589)
Q Consensus 376 ~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~---------RigaveQL~~~ 433 (589)
+++.+|+ +++|+|||||||||++++|+++++ .+.+.+.++. .+++++|....
T Consensus 2 ~~m~~g~--ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (205)
T 3tr0_A 2 NAMNKAN--LFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETR 62 (205)
T ss_dssp ---CCCC--EEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred CcCCCCc--EEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHH
Confidence 4556788 999999999999999999999863 4666655442 25566665433
No 151
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=6.4e-07 Score=85.75 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=24.8
Q ss_pred ccccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 365 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 365 ~~~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll 407 (589)
...--++++|+|.+.+++ +|+|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 9 SGVDLGTENLYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------------CCC--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCceeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence 333457899999999998 99999999999999999999876
No 152
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.23 E-value=1.2e-06 Score=83.06 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=68.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhh-----------CCcEEEEccccc----Cc-------cchhhhhHhhhhccc--
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQ-----------HKVSVMMAACDT----FR-------SGAVEQLRTHARRLQ-- 438 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~-----------~~GkV~l~~~Dt----~R-------igaveQL~~~~~~l~-- 438 (589)
.+.++|+|+||||||||++.|++...+ ..|.|.+.+.++ +. .+.+.| +.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~---~~~~~~~~ 105 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSA---YYRGAVGA 105 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHH---HHTTCCEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHH---HhhcCCEE
Confidence 358999999999999999999997654 356777766432 11 111221 122211
Q ss_pred cceeccCCCCCHH--HHHHHHHHHhc---ccCCCccc----cccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 439 VPIFEKGYEKDPA--IVAKEAIQEAT---RNGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 439 v~l~~~~~~~d~~--~ia~~al~~a~---l~~~d~vl----iDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
+-++.. .+.. ..+...+..+. ......++ +|..........++++|+. +|.+.++ | ++++
T Consensus 106 i~v~d~---~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~l-d--~Sal 174 (191)
T 1oix_A 106 LLVYDI---AKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNGLSFI-E--TSAL 174 (191)
T ss_dssp EEEEET---TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEE-E--CCTT
T ss_pred EEEEEC---cCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEE-E--EeCC
Confidence 112211 1111 11111121111 11122222 2333334456788888885 7887666 6 9999
Q ss_pred CHHHHHHHHHHHH
Q 007789 510 DAVDQLSKFNQKL 522 (589)
Q Consensus 510 D~~~q~~~f~~~l 522 (589)
|.......|..+.
T Consensus 175 d~~~v~~l~~~l~ 187 (191)
T 1oix_A 175 DSTNVEAAFQTIL 187 (191)
T ss_dssp TCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9988776664433
No 153
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.21 E-value=3.4e-07 Score=89.57 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=22.7
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHH-HhHh
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA-YWLL 408 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLA-gll~ 408 (589)
...++||.+.+|+ +++|+|||||||||++++|+ +++.
T Consensus 16 ~~~~~sl~v~~G~--ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGV--ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCC--EEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCC--EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4578999999999 99999999999999999999 9884
No 154
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.19 E-value=3.8e-06 Score=80.73 Aligned_cols=164 Identities=15% Similarity=0.211 Sum_probs=85.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceec--c-C-CCCCHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE--K-G-YEKDPAIVAKEAI 458 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~--~-~-~~~d~~~ia~~al 458 (589)
+.+++|+|..||||||+++.|++.+... .++.+...|+.+.....++. ..++.+.. . + ..... ....+++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~ 103 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVR----RFGIKAEAISTGKECHLDA-HMIYHRL 103 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHH----TTTCEEEECCCTTCSSCCH-HHHHTTG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHH----hCCCcEEEecCCceeeccc-HHHHHHH
Confidence 4589999999999999999999877544 67887777765311111111 11222111 0 0 11112 1222233
Q ss_pred HHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 007789 459 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 538 (589)
Q Consensus 459 ~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~II 538 (589)
. ...+++.+++||+|.......+ . ..++.+++|-+++.+.+... .+...+ . ....++
T Consensus 104 ~--~~~~~d~iiidt~G~~~~~~~~--------~-~~~~~~i~vvd~~~~~~~~~---~~~~~~----~-----~~~iiv 160 (221)
T 2wsm_A 104 K--KFSDCDLLLIENVGNLICPVDF--------D-LGENYRVVMVSVTEGDDVVE---KHPEIF----R-----VADLIV 160 (221)
T ss_dssp G--GGTTCSEEEEEEEEBSSGGGGC--------C-CSCSEEEEEEEGGGCTTHHH---HCHHHH----H-----TCSEEE
T ss_pred H--hcCCCCEEEEeCCCCCCCCchh--------c-cccCcEEEEEeCCCcchhhh---hhhhhh----h-----cCCEEE
Confidence 2 3356899999999842111000 0 13455666666777754321 111111 1 335799
Q ss_pred Ecccccccc---chhhhhHhHHHh--CCCEEEEe--cCCCcccc
Q 007789 539 LTKFDTIDD---KVGAALSMVYVS--GAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 539 lTKlD~~d~---k~G~als~~~~~--g~PI~fig--~Gq~v~DL 575 (589)
+||+|.... ..-.+....... +.|+.++. +|+++.+|
T Consensus 161 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l 204 (221)
T 2wsm_A 161 INKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEW 204 (221)
T ss_dssp EECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHH
T ss_pred EecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHH
Confidence 999998632 223333333333 34665554 45555443
No 155
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.17 E-value=2.1e-06 Score=89.97 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=29.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHH--hHhhCCcEE
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSV 414 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAg--ll~~~~GkV 414 (589)
.+|+++++.++ .|+|||++||||||+++.|+| +++...|.|
T Consensus 25 ~~l~~i~~~lp-----~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 25 SALPTLWDSLP-----AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp CCC----CCCC-----EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred cccccccccCC-----EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 46777777652 799999999999999999999 555555543
No 156
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.17 E-value=4e-07 Score=106.71 Aligned_cols=133 Identities=12% Similarity=0.023 Sum_probs=79.1
Q ss_pred HHHHHHHHhHhhCCcEEEEcccccCcc--chhhhhHhhhhccccceeccCCCC---CHHHHHHHHHHHhcccCC-Ccccc
Q 007789 398 TNLAKVAYWLLQHKVSVMMAACDTFRS--GAVEQLRTHARRLQVPIFEKGYEK---DPAIVAKEAIQEATRNGS-DVVLV 471 (589)
Q Consensus 398 TlLakLAgll~~~~GkV~l~~~Dt~Ri--gaveQL~~~~~~l~v~l~~~~~~~---d~~~ia~~al~~a~l~~~-d~vli 471 (589)
|...|....+.|..+.|.+.|.++... -.+.+...+..++.+......... .......+.+..+++... ....+
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~ 462 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSA 462 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBG
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCc
Confidence 344555567788899999998876221 111222223333322111000000 001122334555555433 13444
Q ss_pred cc-CccccccHHHHHHHHhhhhhcCCC--EEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 472 DT-AGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 472 DT-SGg~qqr~~LaraL~kl~~~~~Pd--lILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
.+ |||++||+.||++|.. +|+ ++|| ||||+|||+.++...+ +.|..+... +.+.|++|+
T Consensus 463 ~~LSGGe~QRv~LAraL~~-----~p~~~lllL-DEPT~gLD~~~~~~l~-~~L~~L~~~----G~TvivVtH 524 (916)
T 3pih_A 463 TTLSGGESQRIRLATQIGS-----GLTGVIYVL-DEPTIGLHPRDTERLI-KTLKKLRDL----GNTVIVVEH 524 (916)
T ss_dssp GGCCHHHHHHHHHHHHHHT-----TCCSCEEEE-ECTTTTCCGGGHHHHH-HHHHHTTTT----TCEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHhh-----CCCCcEEEE-ECCccCCCHHHHHHHH-HHHHHHHhc----CCEEEEEeC
Confidence 44 9999999999999994 666 7777 9999999999876555 667766543 788888887
No 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.11 E-value=1.6e-06 Score=81.53 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=34.9
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
+.+|+ +++|+|||||||||+++.|++. +..|.|.+.+.+.
T Consensus 6 i~~g~--~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGN--ILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTE--EEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred CCCCe--EEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence 45777 9999999999999999999997 6778999887664
No 158
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.09 E-value=4.8e-06 Score=94.72 Aligned_cols=133 Identities=20% Similarity=0.125 Sum_probs=73.9
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHhHhh--CCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHH
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 454 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~--~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia 454 (589)
.+..++ .|+|+|++|+|||||+..|++...+ ..|+| ..+.++......++ .+.+.+.....
T Consensus 5 ~~~~~~--~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~----~~giti~~~~~---------- 67 (665)
T 2dy1_A 5 GGAMIR--TVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAK----LHRTTVRTGVA---------- 67 (665)
T ss_dssp -CCCEE--EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHH----HTTSCCSCEEE----------
T ss_pred ccCCCc--EEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHH----hcCCeEEecce----------
Confidence 344566 9999999999999999999987654 45666 33322211111111 11111100000
Q ss_pred HHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007789 455 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 534 (589)
Q Consensus 455 ~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~i 534 (589)
.+....+...++||+|...-.....+++. ..+..++|.+|+.|+++... .. +..+.... ..
T Consensus 68 -----~~~~~~~~~nliDTpG~~~f~~~~~~~l~------~ad~~ilVvD~~~g~~~qt~-~~----~~~~~~~~---ip 128 (665)
T 2dy1_A 68 -----PLLFRGHRVFLLDAPGYGDFVGEIRGALE------AADAALVAVSAEAGVQVGTE-RA----WTVAERLG---LP 128 (665)
T ss_dssp -----EEEETTEEEEEEECCCSGGGHHHHHHHHH------HCSEEEEEEETTTCSCHHHH-HH----HHHHHHTT---CC
T ss_pred -----EEeeCCEEEEEEeCCCccchHHHHHHHHh------hcCcEEEEEcCCcccchhHH-HH----HHHHHHcc---CC
Confidence 00011345678999987665444555554 44555555559999997643 22 22222222 23
Q ss_pred cEEEEcccccc
Q 007789 535 DGILLTKFDTI 545 (589)
Q Consensus 535 t~IIlTKlD~~ 545 (589)
-.++++|+|..
T Consensus 129 ~ilv~NKiD~~ 139 (665)
T 2dy1_A 129 RMVVVTKLDKG 139 (665)
T ss_dssp EEEEEECGGGC
T ss_pred EEEEecCCchh
Confidence 45889999985
No 159
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.08 E-value=9.2e-07 Score=97.67 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=44.0
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
++.++++.+..|+ +++|+||||||||||++.|++++.|+.|.|.+.+.+-
T Consensus 249 ~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E 298 (511)
T 2oap_1 249 VLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTRE 298 (511)
T ss_dssp HHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCC
T ss_pred HHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCccc
Confidence 4566777788888 8999999999999999999999999999999987653
No 160
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.07 E-value=1.1e-07 Score=102.53 Aligned_cols=33 Identities=27% Similarity=0.185 Sum_probs=31.0
Q ss_pred cccccccccCCceEEEEEecCCCcHHHHHHHHHHh
Q 007789 372 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 372 ~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl 406 (589)
+++++++..+. .++|||+|||||||||+.|++.
T Consensus 148 ~~i~lelk~g~--~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLIA--DVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCSC--SEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCCC--EEEEECCCCCcHHHHHHHHHcC
Confidence 67899999999 9999999999999999999986
No 161
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.05 E-value=5.9e-06 Score=86.86 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=34.9
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
+++|+ ++.|.|++|+||||++..|+......+++|.+...+
T Consensus 58 l~~G~--iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 58 LPRGR--VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45788 999999999999999999998777778888776654
No 162
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.04 E-value=4.2e-06 Score=77.58 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=46.0
Q ss_pred cccCccccccHHHH------HHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 471 VDTAGRMQDNEPLM------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 471 iDTSGg~qqr~~La------raL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..||||+|++.|+ ++|. .+|+++|| ||||+|||+..+. .+.+.+..+... +.+.+++|+-
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~-----~~p~lllL-DEPt~~LD~~~~~-~l~~~l~~~~~~----~~tiiivsH~ 122 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLA-----GEISLLIL-DEPTPYLDEERRR-KLITIMERYLKK----IPQVILVSHD 122 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHH-----SSCSEEEE-ESCSCTTCHHHHH-HHHHHHHHTGGG----SSEEEEEESC
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHc-----CCCCEEEE-ECCCccCCHHHHH-HHHHHHHHHHcc----CCEEEEEECh
Confidence 34499999999886 6666 48999998 9999999998764 444667666432 5677787773
No 163
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.02 E-value=2.1e-06 Score=92.52 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=36.9
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.+|+ +++|+|||||||||||+.|++++.+..|+|.+.+.++
T Consensus 165 ~~gg--ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHG--IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSE--EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcCC--eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 3566 9999999999999999999999999999999987654
No 164
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.02 E-value=2.4e-06 Score=82.35 Aligned_cols=39 Identities=31% Similarity=0.289 Sum_probs=31.6
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHhhC---CcEEEEccc
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAAC 419 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~---~GkV~l~~~ 419 (589)
.+|+ +++|+||||||||||+++|++++.+. .|.|.+.+.
T Consensus 20 ~~g~--~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQ--LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCE--EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCe--EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 3666 99999999999999999999999975 345554443
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.00 E-value=7.7e-06 Score=77.47 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=28.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHh-----hC------CcEEEEcccc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLL-----QH------KVSVMMAACD 420 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~-----~~------~GkV~l~~~D 420 (589)
+.++|+|+||||||||++.|++... |+ .|.|.+.+.+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 4789999999999999999998632 32 3567776643
No 166
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.99 E-value=4.4e-06 Score=80.18 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=37.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 423 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R 423 (589)
+.+++|+|+|||||||+++.|++++.+.+|.|.+.+.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 34999999999999999999999999999999998888754
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.99 E-value=1.5e-05 Score=86.26 Aligned_cols=161 Identities=12% Similarity=0.136 Sum_probs=90.3
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-CcEEEEcccccCccchhhhhHhh--hhccccceec-
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTH--ARRLQVPIFE- 443 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-~GkV~l~~~Dt~RigaveQL~~~--~~~l~v~l~~- 443 (589)
+..|+++..-+.+|+ ++.|.|++|+||||++..|++.+.+. +..|++.+...-. +|+... +...++++..
T Consensus 190 ~~~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~----~~l~~r~~~~~~~~~~~~l 263 (454)
T 2r6a_A 190 FTELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA----QQLVMRMLCAEGNINAQNL 263 (454)
T ss_dssp CHHHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH----HHHHHHHHHHHHTCCHHHH
T ss_pred cHHHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH----HHHHHHHHHHHcCCCHHHH
Confidence 456777776688999 99999999999999999999977764 5589888765421 232211 2222333211
Q ss_pred -cC-CCCCHHHHHHHHHHHhcccCCCccccccCcc-ccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH-------HH
Q 007789 444 -KG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGR-MQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA-------VD 513 (589)
Q Consensus 444 -~~-~~~d~~~ia~~al~~a~l~~~d~vliDTSGg-~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~-------~~ 513 (589)
.+ ...+....+.+++..+.. ....+.|+++- ..+....++.+ +...+|++|++ |+++..... ..
T Consensus 264 ~~g~l~~~~~~~~~~a~~~l~~--~~l~i~d~~~~s~~~i~~~~~~l---~~~~~~~livI-D~l~~~~~~~~~~~~~~~ 337 (454)
T 2r6a_A 264 RTGKLTPEDWGKLTMAMGSLSN--AGIYIDDTPSIRVSDIRAKCRRL---KQESGLGMIVI-DYLQLIQGSGRSKENRQQ 337 (454)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHS--SCEEEECCTTCCHHHHHHHHHHH---HTTTCCCEEEE-ECGGGSCCSCC----CHH
T ss_pred hcCCCCHHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHH---HHHcCCCEEEE-ccHHHhccCCCCCCCHHH
Confidence 11 111122334445554432 23333343211 11112333433 33457998887 999876632 11
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
....+...|+.++.. .++++++++.+-
T Consensus 338 ~i~~i~~~Lk~lAke---~~i~vi~~sql~ 364 (454)
T 2r6a_A 338 EVSEISRSLKALARE---LEVPVIALSQLS 364 (454)
T ss_dssp HHHHHHHHHHHHHHH---HTCCEEEEECCC
T ss_pred HHHHHHHHHHHHHHH---hCCeEEEEecCC
Confidence 223333555555543 378888888753
No 168
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.98 E-value=1.7e-06 Score=88.82 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=31.0
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEE---cccccCc
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDTFR 423 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l---~~~Dt~R 423 (589)
.+..|+ +++|+|||||||||||+.|+|++.|+.|+|.+ .|.++.+
T Consensus 165 ~~l~ge--iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~ 212 (301)
T 1u0l_A 165 EYLKGK--ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTT 212 (301)
T ss_dssp HHHSSS--EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCC
T ss_pred HHhcCC--eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCcee
Confidence 344788 99999999999999999999999999999999 7777643
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.98 E-value=2.7e-06 Score=81.76 Aligned_cols=27 Identities=37% Similarity=0.335 Sum_probs=23.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHh
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
+|+ +++|+|||||||||++++|++++.
T Consensus 3 ~g~--~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPR--PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --C--CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHhhCc
Confidence 566 899999999999999999999885
No 170
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.98 E-value=8.7e-05 Score=73.38 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=89.8
Q ss_pred EEEEEe-cCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhh---------hhHhhh-------h-----cccccee
Q 007789 385 VVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE---------QLRTHA-------R-----RLQVPIF 442 (589)
Q Consensus 385 iI~LVG-pNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Rigave---------QL~~~~-------~-----~l~v~l~ 442 (589)
+|+|++ ..|+||||+...||..+...+.+|++..+|......-. .+..+. + .-++.+.
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~l 83 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKVV 83 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEEE
Confidence 677765 56899999999999999888889999999974311100 000000 0 0122222
Q ss_pred ccCCCCCH-----HHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHH
Q 007789 443 EKGYEKDP-----AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 517 (589)
Q Consensus 443 ~~~~~~d~-----~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 517 (589)
......+. .....++++.+. ..+|+++||++++... ....++. ..|.+++|-+|.. ........
T Consensus 84 p~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~--~~~~~~~------~ad~vi~v~~~~~--~~~~~~~~ 152 (263)
T 1hyq_A 84 PAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLER--SAVIAIA------AAQELLLVVNPEI--SSITDGLK 152 (263)
T ss_dssp ECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSH--HHHHHHH------HSSEEEEEECSSH--HHHHHHHH
T ss_pred cCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCCh--HHHHHHH------HCCEEEEEeCCCh--hHHHHHHH
Confidence 21111011 122334455443 5799999999877652 2222233 5667777766532 12222222
Q ss_pred HHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEE
Q 007789 518 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 564 (589)
Q Consensus 518 f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~ 564 (589)
+.+.+... ...+.++|+++++.. .....+-.+....+.|+.
T Consensus 153 ~~~~l~~~-----~~~~~~vv~N~~~~~-~~~~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 153 TKIVAERL-----GTKVLGVVVNRITTL-GIEMAKNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHHH-----TCEEEEEEEEEECTT-THHHHHHHHHHHTTSCEE
T ss_pred HHHHHHhc-----CCCeeEEEEccCCcc-cccchHHHHHHHhCCCeE
Confidence 22333322 235678999999974 333334445555777754
No 171
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.97 E-value=2.4e-06 Score=80.96 Aligned_cols=28 Identities=32% Similarity=0.241 Sum_probs=24.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKV 412 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~G 412 (589)
+++|+|||||||||++++|++++.+..|
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 8999999999999999999999874433
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.94 E-value=6.4e-06 Score=78.78 Aligned_cols=39 Identities=31% Similarity=0.201 Sum_probs=32.6
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
..+|+ +|+|+|||||||||+++.|++.+ |.+.+.+.++.
T Consensus 26 ~~~g~--~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~ 64 (200)
T 4eun_A 26 GEPTR--HVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFH 64 (200)
T ss_dssp --CCC--EEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGS
T ss_pred CCCCc--EEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccc
Confidence 34677 99999999999999999999987 78888876654
No 173
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.93 E-value=2.5e-05 Score=71.64 Aligned_cols=142 Identities=20% Similarity=0.134 Sum_probs=73.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
..++|+|++||||||+++.|++...+. +.. .+ ..+..... .+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~-~~~--~~------------------~t~~~~~~---------------~~~~ 47 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYI-GNW--PG------------------VTVEKKEG---------------EFEY 47 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSC-C-------------------------CCCCCEE---------------EEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeec-cCC--CC------------------cceeeeEE---------------EEEE
Confidence 479999999999999999998742211 100 00 00000000 0001
Q ss_pred cCCCccccccCcccccc-----HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 007789 464 NGSDVVLVDTAGRMQDN-----EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 538 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr-----~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~II 538 (589)
.+....++||+|....+ ..+.+... ...+++.+++|-+++. ..... ..+..+.... ..-.++
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~D~~~---~~~~~----~~~~~~~~~~---~p~ilv 114 (165)
T 2wji_A 48 NGEKFKVVDLPGVYSLTANSIDEIIARDYI---INEKPDLVVNIVDATA---LERNL----YLTLQLMEMG---ANLLLA 114 (165)
T ss_dssp TTEEEEEEECCCCSCSSSSSHHHHHHHHHH---HHHCCSEEEEEEETTC---HHHHH----HHHHHHHHTT---CCEEEE
T ss_pred CCcEEEEEECCCcccCCCcchhHHHHHHHH---hcCCCCEEEEEecCCc---hhHhH----HHHHHHHhcC---CCEEEE
Confidence 12345678998865432 12333222 1237899998877764 21111 2233333322 334689
Q ss_pred Eccccccccch--hhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 539 LTKFDTIDDKV--GAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 539 lTKlD~~d~k~--G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
.+|+|....+. -.+-.+....+.|+..+. +|+++.+
T Consensus 115 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 115 LNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE 154 (165)
T ss_dssp EECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred EEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 99999753211 012345556677876665 4555543
No 174
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.89 E-value=3e-05 Score=71.90 Aligned_cols=143 Identities=21% Similarity=0.158 Sum_probs=74.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|++|||||||++.|++.. ....... + ..+..... .+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~------~~~~~~~----~-----------~t~~~~~~---------------~~~ 50 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN------VYIGNWP----G-----------VTVEKKEG---------------EFE 50 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC------EEEEECT----T-----------SCCEEEEE---------------EEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC------ccccCCC----C-----------eeccceEE---------------EEE
Confidence 4589999999999999999998631 1110000 0 00000000 001
Q ss_pred ccCCCccccccCcccccc-----HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEE
Q 007789 463 RNGSDVVLVDTAGRMQDN-----EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 537 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr-----~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~I 537 (589)
..+....++||+|...-. ..+.+... ....++.+++|-+++. .... ...+..+.... ..-.+
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~d~~~---~~~~----~~~~~~~~~~~---~piil 117 (188)
T 2wjg_A 51 YNGEKFKVVDLPGVYSLTANSIDEIIARDYI---INEKPDLVVNIVDATA---LERN----LYLTLQLMEMG---ANLLL 117 (188)
T ss_dssp ETTEEEEEEECCCCSCCSSSSHHHHHHHHHH---HHHCCSEEEEEEEGGG---HHHH----HHHHHHHHTTT---CCEEE
T ss_pred eCCcEEEEEECCCcCccccccHHHHHHHHHH---hccCCCEEEEEecchh---HHHH----HHHHHHHHhcC---CCEEE
Confidence 122345678998865532 23333322 1136888888877654 1111 12333333321 23468
Q ss_pred EEccccccccch--hhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 538 LLTKFDTIDDKV--GAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 538 IlTKlD~~d~k~--G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
+.+|+|....+. -.+-.+....+.|+..+. +|+++.+
T Consensus 118 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 118 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE 158 (188)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred EEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHH
Confidence 899999753211 123344555678877766 4555443
No 175
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.88 E-value=0.00013 Score=71.02 Aligned_cols=165 Identities=19% Similarity=0.131 Sum_probs=93.7
Q ss_pred eEEEEEec-CCCcHHHHHHHHHHhHhhC-CcEEEEcccccCccchhhhh------Hhhhhc-------------------
Q 007789 384 YVVVFVGV-NGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQL------RTHARR------------------- 436 (589)
Q Consensus 384 ~iI~LVGp-NGvGKTTlLakLAgll~~~-~GkV~l~~~Dt~RigaveQL------~~~~~~------------------- 436 (589)
.+|+|++. -|+||||+...||..+... +.+|++..+|..+...-..+ ..+.+.
T Consensus 5 ~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQHI 84 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSEEE
T ss_pred eEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhEec
Confidence 48888876 5799999999999999887 88999999997521111100 000000
Q ss_pred -cccceeccCCCCCH-----HHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCC
Q 007789 437 -LQVPIFEKGYEKDP-----AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 510 (589)
Q Consensus 437 -l~v~l~~~~~~~d~-----~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 510 (589)
-++.+......... .....++++.+. ..||+++||++++... ....+. ...|.+++|-+|.
T Consensus 85 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~---~~~~~l-----~~ad~viiv~~~~---- 151 (245)
T 3ea0_A 85 SPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDH---VGVWVL-----EHLDELCIVTTPS---- 151 (245)
T ss_dssp ETTEEEECCCSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCT---THHHHG-----GGCSEEEEEECSS----
T ss_pred CCCeEEEcCCCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCch---HHHHHH-----HHCCEEEEEecCc----
Confidence 02222221111000 123445555543 3699999999776643 222233 2678888877763
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEE
Q 007789 511 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 564 (589)
Q Consensus 511 ~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~ 564 (589)
... .......+..+.........-++|+++++.- .... .-.+...++.|+.
T Consensus 152 ~~~-~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~-~~~~-~~~~~~~~~~~v~ 202 (245)
T 3ea0_A 152 LQS-LRRAGQLLKLCKEFEKPISRIEIILNRADTN-SRIT-SDEIEKVIGRPIS 202 (245)
T ss_dssp HHH-HHHHHHHHHHHHTCSSCCSCEEEEEESTTSC-TTSC-HHHHHHHHTSCEE
T ss_pred HHH-HHHHHHHHHHHHHhCCCccceEEEEecCCCC-CCCC-HHHHHHHhCCCeE
Confidence 222 2233344444444333456678999999864 2222 2344556687765
No 176
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.87 E-value=3.8e-05 Score=73.89 Aligned_cols=169 Identities=17% Similarity=0.251 Sum_probs=83.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhcccccee-ccCCCCCHHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF-EKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~-~~~~~~d~~~ia~~al~~a 461 (589)
++.|+|+|..||||||++..|+..+... .++.+.+.|.....-..++...... .+.+. ...+....... .+.+..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~~~~l 114 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERMEKHGAK-VVPLNTGKECHLDAHLV-GHALEDL 114 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHHHTTTCE-EEEEECTTCSSCCHHHH-HHHHTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHHHhcCCc-EEEecCCceEeccHHHH-HHHHHHH
Confidence 4589999999999999999999876544 5677777775421111111110000 01111 00111222222 3444444
Q ss_pred cccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 462 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 462 ~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
...+++.+++|++|.......+ . ..++.++.|-++..+.+.... +...+ . ....+++||
T Consensus 115 ~~~~~d~~~id~~g~i~~~~s~----~-----~~~~~~~~v~~~~~~~~~~~~---~~~~~----~-----~~~iiv~NK 173 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPADF----D-----LGTHKRIVVISTTEGDDTIEK---HPGIM----K-----TADLIVINK 173 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGGGC----C-----CSCSEEEEEEEGGGCTTTTTT---CHHHH----T-----TCSEEEEEC
T ss_pred hcCCCCEEEEeCCCCccCcchh----h-----hccCcEEEEEecCcchhhHhh---hhhHh----h-----cCCEEEEec
Confidence 4456789999999854322111 0 133444444443333322110 00111 0 346799999
Q ss_pred cccccc---chhhhhHhHHHh--CCCEEEEe--cCCCcccc
Q 007789 542 FDTIDD---KVGAALSMVYVS--GAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 542 lD~~d~---k~G~als~~~~~--g~PI~fig--~Gq~v~DL 575 (589)
+|.... ..-.+....... +.|+.++. +|+++.+|
T Consensus 174 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 214 (226)
T 2hf9_A 174 IDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKV 214 (226)
T ss_dssp GGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHH
T ss_pred cccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHH
Confidence 998632 122223333333 45665553 56666554
No 177
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.87 E-value=3.5e-05 Score=75.43 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHh
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
.+..|+|+|++|||||||++.|+|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 346899999999999999999987443
No 178
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.86 E-value=6.4e-06 Score=83.48 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=41.6
Q ss_pred ccccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 367 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 367 ~i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
..++++++++.++.| ++|+||||+||||+++.||+.+.+ +.|.+.+.++.
T Consensus 32 ~~~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL 81 (274)
T ss_dssp SHHHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred CHHHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence 345788888887666 899999999999999999998766 67888887763
No 179
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.85 E-value=6e-07 Score=89.12 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=29.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
+++|+|||||||||++.+|+|++.|+.|.|.+.+.++
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 8899999999999999999999999999999988765
No 180
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.85 E-value=4.3e-05 Score=69.72 Aligned_cols=148 Identities=17% Similarity=0.146 Sum_probs=76.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
...|+|+|+.||||||+++.|++-..... + ....+..+...... ..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------~-----------~~t~~~~~~~~~~~-------------~~ 60 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD----------C-----------PHTIGVEFGTRIIE-------------VS 60 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSS----------C-----------TTSCCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC----------C-----------CCccceEEEEEEEE-------------EC
Confidence 35799999999999999999986221000 0 00001111000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...+...++||+|....+......+. +.+.+++|-+++..... .....+...+..+.. ....-.+++||+
T Consensus 61 ~~~~~~~l~Dt~G~~~~~~~~~~~~~------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~---~~~piilv~nK~ 130 (179)
T 1z0f_A 61 GQKIKLQIWDTAGQERFRAVTRSYYR------GAAGALMVYDITRRSTY-NHLSSWLTDARNLTN---PNTVIILIGNKA 130 (179)
T ss_dssp TEEEEEEEEECTTGGGTCHHHHHHHH------TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC---TTCEEEEEEECT
T ss_pred CeEEEEEEEECCCChHhhhhHHHHhc------cCCEEEEEEeCcCHHHH-HHHHHHHHHHHHhcC---CCCcEEEEEECc
Confidence 11235678899997665543333333 77888887666543211 111222222332221 223456899999
Q ss_pred cccccch---hhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 543 DTIDDKV---GAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 543 D~~d~k~---G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
|..+.+. -.+..+....+.|+.++. +|+++.+
T Consensus 131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167 (179)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9863221 234455556677766665 4555443
No 181
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.83 E-value=3e-06 Score=87.76 Aligned_cols=46 Identities=30% Similarity=0.276 Sum_probs=26.5
Q ss_pred cccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEE---cccccCc
Q 007789 376 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDTFR 423 (589)
Q Consensus 376 ~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l---~~~Dt~R 423 (589)
+.+.+|+ +++|+||||||||||++.|+|.+.+..|.|.+ .|.++.+
T Consensus 168 ~~~~~G~--~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~ 216 (307)
T 1t9h_A 168 IPHFQDK--TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTR 216 (307)
T ss_dssp GGGGTTS--EEEEEESHHHHHHHHHHHHCC-------------------CC
T ss_pred HhhcCCC--EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccccc
Confidence 4556888 99999999999999999999999999999998 6666644
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.83 E-value=4.5e-06 Score=79.83 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=38.2
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEE--EEccccc
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV--MMAACDT 421 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV--~l~~~Dt 421 (589)
....+.+...+|+ +|+|+|||||||||+++.|++.+. ..|.+ .+.+.++
T Consensus 14 ~~~~~~~~~~~g~--~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 14 KVDRQRLLDQKGC--VIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHHHTSCCE--EEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred HHHHHHhcCCCCe--EEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 3444555556677 999999999999999999999988 56766 6766554
No 183
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.82 E-value=0.00014 Score=74.70 Aligned_cols=124 Identities=24% Similarity=0.279 Sum_probs=68.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHH
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 459 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~ 459 (589)
++.++.|+|+|.+|||||||++.|.|. ++.+....+ +. +.....++ +
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~------~~~i~s~~~---~t-----T~~~~~~~--~----------------- 53 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT------KVSIISPKA---GT-----TRMRVLGV--K----------------- 53 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS------CCSCCCSSS---CC-----CCSCEEEE--E-----------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC------CccccCCCC---Cc-----eeeEEEEE--E-----------------
Confidence 344679999999999999999999752 111111000 00 00000010 0
Q ss_pred Hhccc-CCCccccccCcccccc--HHHHHHHHhhh--hhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007789 460 EATRN-GSDVVLVDTAGRMQDN--EPLMRALSKLI--YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 534 (589)
Q Consensus 460 ~a~l~-~~d~vliDTSGg~qqr--~~LaraL~kl~--~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~i 534 (589)
... ++..+++||+|-.+.. ..+.+.+.... ....+|.+++|-+++.+....+.. .+ +..+.... ..
T Consensus 54 --~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~-~~---~~~l~~~~---~p 124 (308)
T 3iev_A 54 --NIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEE-IY---QNFIKPLN---KP 124 (308)
T ss_dssp --EETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HH---HHHTGGGC---CC
T ss_pred --ecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHH-HH---HHHHHhcC---CC
Confidence 011 4567899999875533 11222221111 113789999998898887665431 11 33333321 34
Q ss_pred cEEEEcccccc
Q 007789 535 DGILLTKFDTI 545 (589)
Q Consensus 535 t~IIlTKlD~~ 545 (589)
..+++||+|..
T Consensus 125 vilV~NK~Dl~ 135 (308)
T 3iev_A 125 VIVVINKIDKI 135 (308)
T ss_dssp EEEEEECGGGS
T ss_pred EEEEEECccCC
Confidence 57899999986
No 184
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.81 E-value=7.5e-05 Score=80.42 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll 407 (589)
.+..++|||+||||||||++.|+|..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 35689999999999999999999854
No 185
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.81 E-value=8.7e-06 Score=76.71 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=30.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
+++|+|||||||||+++.|++ +.+|.|.+.+.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 899999999999999999987 6678898887654
No 186
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.80 E-value=0.00012 Score=65.67 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=71.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+.-|+|+|+.||||||+++.|++--... .+.. +........+.. .
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~----------~~~~-------t~~~~~~~~~~~------------------~ 48 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVE----------DYEP-------TKADSYRKKVVL------------------D 48 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS----------CCCT-------TCCEEEEEEEEE------------------T
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCC----------CCCC-------CcceEEEEEEEE------------------C
Confidence 3579999999999999999998621100 0000 000000000000 0
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|....+ .+...... ..+.+++|-+++... .......+...+...... ....-.+++||+
T Consensus 49 ~~~~~~~l~D~~G~~~~~-~~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~~piilv~nK~ 119 (168)
T 1u8z_A 49 GEEVQIDILDTAGQEDYA-AIRDNYFR-----SGEGFLCVFSITEME-SFAATADFREQILRVKED--ENVPFLLVGNKS 119 (168)
T ss_dssp TEEEEEEEEECCC---CH-HHHHHHHH-----HCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCC--TTSCEEEEEECG
T ss_pred CEEEEEEEEECCCcchhH-HHHHHHhh-----cCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC--CCCcEEEEEECc
Confidence 012356789999866543 33333332 677777776554321 111122222223222221 113346999999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
|..+.+ .-.+.......+.|+..+. +|+++.+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp GGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred cccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 986322 1233444455677765554 3555443
No 187
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.80 E-value=5.1e-05 Score=69.42 Aligned_cols=152 Identities=15% Similarity=0.163 Sum_probs=76.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+.-|+|+|+.||||||+++.|++-- |. ..+....++.++......+ +
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~--------------~~-------~~~~~t~~~~~~~~~~~~~------------~ 52 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET--------------FG-------KQYKQTIGLDFFLRRITLP------------G 52 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG--------------TT-------HHHHHTTTSSEEEEEEEET------------T
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc--------------CC-------CCCCCceeEEEEEEEEEeC------------C
Confidence 4579999999999999999998521 10 0001111111110000000 0
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
.......++||+|....+. +..... .+.+.+++|-+++.... ......+...+..+.........-.++.||+
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGK-MLDKYI-----YGAQGVLLVYDITNYQS-FENLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp TEEEEEEEEECTTCCTTCT-THHHHH-----TTCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred CCEEEEEEEECCCCccccc-hhhHHH-----hhCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 0124567889998765442 233333 27888888876654321 1112222233333221101112246899999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
|..+.+ .-.+..+....+.|+..+. +|+++.+
T Consensus 126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred ccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 986322 1233445556678876665 4555443
No 188
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.80 E-value=0.00049 Score=66.59 Aligned_cols=163 Identities=17% Similarity=0.141 Sum_probs=90.1
Q ss_pred eEEEEEec-CCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhh---------hhHhhh-------hc------cccc
Q 007789 384 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE---------QLRTHA-------RR------LQVP 440 (589)
Q Consensus 384 ~iI~LVGp-NGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Rigave---------QL~~~~-------~~------l~v~ 440 (589)
.+|+|++. .|+||||+...||..+...+.+|++..+|..+...-. .+..+. +. -++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 37888765 5899999999999999888889999999874211100 000000 00 1122
Q ss_pred eeccCCCC-CH-----HHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 441 IFEKGYEK-DP-----AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 441 l~~~~~~~-d~-----~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
+.. +... +. .....+.++.+. ..||+++||++++.. .....+. ...|.+++|-+|.. .....
T Consensus 83 ~lp-~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~---~~~~~~~-----~~ad~vi~v~~~~~--~~~~~ 150 (237)
T 1g3q_A 83 VLP-GAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQ---LDAMSAM-----LSGEEALLVTNPEI--SCLTD 150 (237)
T ss_dssp EEC-CCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSS---HHHHHHH-----TTCSEEEEEECSCH--HHHHH
T ss_pred EEe-CCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcC---HHHHHHH-----HHCCeEEEEecCCc--ccHHH
Confidence 222 1110 00 122344555544 568999999977765 2233333 26778888777632 11222
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEE
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 564 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~ 564 (589)
....+..+... ...+.++|+++++.. .....+-.+....+.|+.
T Consensus 151 ---~~~~~~~l~~~--~~~~~~vv~N~~~~~-~~~~~~~~~~~~~~~~~~ 194 (237)
T 1g3q_A 151 ---TMKVGIVLKKA--GLAILGFVLNRYGRS-DRDIPPEAAEDVMEVPLL 194 (237)
T ss_dssp ---HHHHHHHHHHT--TCEEEEEEEEEETSC-TTCCCHHHHHHHHCSCEE
T ss_pred ---HHHHHHHHHhC--CCceEEEEEecCCcc-cchhHHHHHHHHhCccce
Confidence 22333333332 235678999999874 222233344455677753
No 189
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.79 E-value=0.00016 Score=67.90 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=75.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
...|+|+|+.|||||||++.|.+-.... .+.. +........+.. .
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~~~----------~~~~-------t~~~~~~~~~~~------------------~ 58 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEFVE----------DYEP-------TKADSYRKKVVL------------------D 58 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT----------TCCT-------TCCEEEEEEEEE------------------T
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCC----------CCCC-------ccceEEEEEEEE------------------C
Confidence 3579999999999999999998521100 0000 000000000000 0
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|....+ .+...... ..+.+++|-+.+... .......+...+...... ....-.+++||+
T Consensus 59 ~~~~~~~l~Dt~G~~~~~-~~~~~~~~-----~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~~piilv~nK~ 129 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYA-AIRDNYFR-----SGEGFLCVFSITEME-SFAATADFREQILRVKED--ENVPFLLVGNKS 129 (206)
T ss_dssp TEEEEEEEEECCCTTCCH-HHHHHHHH-----HCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTC--SCCCEEEEEECT
T ss_pred CEEEEEEEEcCCChhhhH-HHHHHHHh-----hCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC--CCCCEEEEEecc
Confidence 012356688999866544 33333332 677777765554321 111222222223222211 112346999999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|..+.+ .-.+..+....+.|+..+. +|+++.+|
T Consensus 130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 130 DLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred CccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 986422 2234445556677876665 46655544
No 190
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.79 E-value=0.00028 Score=65.54 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=77.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|+.||||||+++.|++-..... +.. +.........+.. .
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------~~~-------~~~~~~~~~~~~~-----------------~ 61 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTES----------YIS-------TIGVDFKIRTIEL-----------------D 61 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSC----------CCC-------CSSEEEEEEEEEE-----------------T
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC----------CCC-------cccceEEEEEEEE-----------------C
Confidence 45799999999999999999975211100 000 0000000000000 0
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|....+... .... ...+.+++|-+++... .......+...+..+.. ....-.+++||+
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~~-~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~ 131 (196)
T 3tkl_A 62 GKTIKLQIWDTAGQERFRTIT-SSYY-----RGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYAS---ENVNKLLVGNKC 131 (196)
T ss_dssp TEEEEEEEEEECCSGGGCTTH-HHHH-----TTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSC---TTCEEEEEEECT
T ss_pred CEEEEEEEEECCCcHhhhhhH-HHHH-----hhCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcC---CCCCEEEEEECc
Confidence 011356688999866544333 3333 2788888886665422 11112222233333322 123457899999
Q ss_pred cccccch---hhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDKV---GAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k~---G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|....+. -.+..+....+.|+..+. +|+++.++
T Consensus 132 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 132 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 9864321 234455666788887775 45555443
No 191
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.79 E-value=2.1e-05 Score=74.10 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=20.1
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHH
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAg 405 (589)
+++++++..+.. .|+|+|++||||||+++.+++
T Consensus 13 ~l~~~~~~~~~~---ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG---KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C---EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc---EEEEECCCCCCHHHHHHHHhc
Confidence 556666654433 689999999999999999986
No 192
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.78 E-value=2e-05 Score=70.79 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=46.7
Q ss_pred CccccccCcccccc---HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 467 DVVLVDTAGRMQDN---EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 467 d~vliDTSGg~qqr---~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
...++||+|..... ..+....... ....+.+++|-+++.+...... .+.+.+.. .. ..-.+++||+|
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~---~~---~p~ilv~nK~D 119 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRA--LEDAEVVLFAVDGRAELTQADY--EVAEYLRR---KG---KPVILVATKVD 119 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHH--TTTCSEEEEEEESSSCCCHHHH--HHHHHHHH---HT---CCEEEEEECCC
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHH--HHhCCEEEEEEECCCcccHhHH--HHHHHHHh---cC---CCEEEEEECcc
Confidence 45688998876521 1111111111 1378888888888877665432 22233322 11 23579999999
Q ss_pred ccccchhhhhHhHHHhCC-CEEEEe
Q 007789 544 TIDDKVGAALSMVYVSGA-PVMFVG 567 (589)
Q Consensus 544 ~~d~k~G~als~~~~~g~-PI~fig 567 (589)
.... --.+..+. ..+. |+..+.
T Consensus 120 l~~~-~~~~~~~~-~~~~~~~~~~S 142 (161)
T 2dyk_A 120 DPKH-ELYLGPLY-GLGFGDPIPTS 142 (161)
T ss_dssp SGGG-GGGCGGGG-GGSSCSCEECB
T ss_pred cccc-hHhHHHHH-hCCCCCeEEEe
Confidence 8643 22222333 4455 554444
No 193
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.78 E-value=4.3e-05 Score=71.31 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgl 406 (589)
+..|+|+|+.||||||+++.|++-
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999873
No 194
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.77 E-value=0.00011 Score=65.53 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=74.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
..|+++|+.||||||+++.|++-.... .+.. +........+.. ..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~----------~~~~-------~~~~~~~~~~~~------------------~~ 48 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD----------ECDP-------TIEDSYRKQVVI------------------DG 48 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS----------CCCT-------TCCEEEEEEEEE------------------TT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc----------ccCC-------ccceEEEEEEEE------------------CC
Confidence 468999999999999999998632111 0000 000000000000 01
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
..+...++||+|....+.. ...... ..+.+++|-+++.. +.......+...+....... ...-.+++||+|
T Consensus 49 ~~~~~~~~D~~G~~~~~~~-~~~~~~-----~~~~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~--~~p~iiv~nK~D 119 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAM-RDQYMR-----TGEGFLCVFAINNT-KSFEDIHQYREQIKRVKDSD--DVPMVLVGNKSD 119 (166)
T ss_dssp EEEEEEEEECCCCSSCCHH-HHHHHH-----HCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTT
T ss_pred EEEEEEEEECCCchhhhHH-HHHhhc-----cCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCC--CCcEEEEEEchh
Confidence 1235678999987664433 333332 56767666555422 11112222223333332211 133569999999
Q ss_pred ccccc--hhhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 544 TIDDK--VGAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 544 ~~d~k--~G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
..... .-.+..+....+.|+..+. +|+.+.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp CSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred hhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 75311 2334455566788877765 3444433
No 195
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.77 E-value=0.00033 Score=64.15 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=74.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|+.|||||||++.|++--.. ..+.. +........+.. .
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~----------~~~~~-------t~~~~~~~~~~~------------------~ 62 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFV----------EDYEP-------TKADSYRKKVVL------------------D 62 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC----------CSCCT-------TCCEEEEEEEEE------------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC----------CcCCC-------ccceEEEEEEEE------------------C
Confidence 357999999999999999999852110 00000 000000000000 0
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|....+ .+...... ..+.+++|-+++... .......+...+...... ....-.+++||+
T Consensus 63 ~~~~~~~l~Dt~G~~~~~-~~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~~piilv~nK~ 133 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYA-AIRDNYFR-----SGEGFLCVFSITEME-SFAATADFREQILRVKED--ENVPFLLVGNKS 133 (187)
T ss_dssp TEEEEEEEEECCCTTCCH-HHHHHHHH-----HCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCC--TTCCEEEEEECG
T ss_pred CEEEEEEEEECCCCcccH-HHHHHHhc-----cCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCC--CCCCEEEEEECc
Confidence 012356789999866544 33333332 677777776554321 111122222223333221 112346899999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|..+.+ .-.+.......+.|+.++. +|+.+.+|
T Consensus 134 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 134 DLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred cccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 986322 1234444555677765554 35544443
No 196
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.75 E-value=6.2e-05 Score=69.76 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=52.8
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
....++||+|...... +...... ..+.+|+|-+++.+..... +...+..+..... ..-.+++||+|..
T Consensus 93 ~~~~i~Dt~G~~~~~~-~~~~~~~-----~~d~~i~v~D~~~~~s~~~----~~~~~~~i~~~~~--~piilv~NK~D~~ 160 (208)
T 3clv_A 93 IKFDIWDTAGQERYAS-IVPLYYR-----GATCAIVVFDISNSNTLDR----AKTWVNQLKISSN--YIIILVANKIDKN 160 (208)
T ss_dssp EEEEEEECTTGGGCTT-THHHHHT-----TCSEEEEEEETTCHHHHHH----HHHHHHHHHHHSC--CEEEEEEECTTCC
T ss_pred eEEEEEECCCcHHHHH-HHHHHhc-----CCCEEEEEEECCCHHHHHH----HHHHHHHHHhhCC--CcEEEEEECCCcc
Confidence 4577899998655433 3444442 7788888877654422111 1122223322111 3457999999932
Q ss_pred cc--chhhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 546 DD--KVGAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 546 d~--k~G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
.. ..-.+.......+.|+..+. +|+.+.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 194 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNI 194 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 11 12344555556677777665 45555443
No 197
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.75 E-value=0.00052 Score=67.93 Aligned_cols=172 Identities=15% Similarity=0.189 Sum_probs=90.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchh------------hhhHh------hhhc-----cccc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV------------EQLRT------HARR-----LQVP 440 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Rigav------------eQL~~------~~~~-----l~v~ 440 (589)
.+|+|.|.-|+||||+..-||..+...+.+|++..+|....... +-+.. +.+. -++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~ 81 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR 81 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence 37888899999999999999999988888999999997431110 00110 0000 0222
Q ss_pred eeccCCCC-----CHHHH--HHHHHHHhc--ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 441 IFEKGYEK-----DPAIV--AKEAIQEAT--RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 441 l~~~~~~~-----d~~~i--a~~al~~a~--l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+...+... ..... ....++.+. ...||+++||++|+...+. +...+.. ...|.+++|-+|.. ..
T Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~-~~~~~~~----~~aD~viiv~~~~~--~s 154 (269)
T 1cp2_A 82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGG-FAMPIRE----GKAQEIYIVASGEM--MA 154 (269)
T ss_dssp EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTT-TTHHHHT----TSCCEEEEEECSSH--HH
T ss_pred EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhhh-hhhhhhH----hhCCEEEEeecCch--hh
Confidence 22211110 01111 112223332 2358999999987654332 1111221 25788888776632 12
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEE
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 564 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~ 564 (589)
......+.+.+..+.... ...+-++|+++++.. ...-.+-.+....+.|+.
T Consensus 155 ~~~~~~~~~~l~~~~~~~-~~~~~gvv~N~~~~~-~~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 155 LYAANNISKGIQKYAKSG-GVRLGGIICNSRKVA-NEYELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHHHHHBTTB-BCEEEEEEEECCSSS-CCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhcC-CCcEEEEEeecCCcc-hhHHHHHHHHHHcCCccc
Confidence 222222334444443221 223568999998753 223334445556788854
No 198
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.75 E-value=1.2e-05 Score=76.26 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=28.0
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 412 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G 412 (589)
+.+|+ +++|+|||||||||+++.|++++.|..|
T Consensus 3 i~~g~--~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 3 NEKGL--LIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp -CCCC--EEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCC--EEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 45777 9999999999999999999998866444
No 199
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.73 E-value=5.1e-05 Score=72.05 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=45.9
Q ss_pred ccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 472 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 472 DTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
..|||++|++.|+++|+. .....|+++|| |||++|||+.+... +.+.|..+.. ....|++|.-+
T Consensus 64 ~LSgGekqr~ala~~la~-~~~~~~~~llL-DEp~a~LD~~~~~~-~~~~l~~~~~-----~~~~ivith~~ 127 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAI-QKFKPAPFYLF-DEIDAHLDDANVKR-VADLIKESSK-----ESQFIVITLRD 127 (173)
T ss_dssp GCCHHHHHHHHHHHHHHH-HHHSCCSEEEE-ESTTTTCCHHHHHH-HHHHHHHHTT-----TSEEEEECSCH
T ss_pred cCCHHHHHHHHHHHHHHh-cccCCCCEEEE-CCCccCCCHHHHHH-HHHHHHHhcc-----CCEEEEEEecH
Confidence 349999999999999973 11234678777 99999999998754 4466766653 23567777643
No 200
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.72 E-value=5.2e-05 Score=70.83 Aligned_cols=149 Identities=16% Similarity=0.134 Sum_probs=76.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+.-|+|+|+.|||||||++.|++--.... +. ...++.+...... ..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~----------~~-----------~t~~~~~~~~~~~-------------~~ 70 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHD----------SR-----------TTIGVEFSTRTVM-------------LG 70 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSS----------CC-----------CCSSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC----------CC-----------CccceeEEEEEEE-------------EC
Confidence 45799999999999999999987321100 00 0001111000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...+...++||+|..+.+. +..... .+.+.+++|-+++... . .......+..+.........-.+++||+
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~vi~v~D~~~~~---s-~~~~~~~l~~i~~~~~~~~piilv~nK~ 140 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRA-ITSAYY-----RGAVGALLVFDLTKHQ---T-YAVVERWLKELYDHAEATIVVMLVGNKS 140 (193)
T ss_dssp TEEEEEEEEEESCCCTTCT-THHHHH-----TTCCEEEEEEETTCHH---H-HHTHHHHHHHHHTTSCTTCEEEEEEECG
T ss_pred CEEEEEEEEeCCCchhhhh-hhHHHh-----ccCCEEEEEEECCCHH---H-HHHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 1123466889988765443 333333 2788888876654322 1 1111122333333222223457899999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|....+ .-.+..+....+.|+..+. +|+++.+|
T Consensus 141 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 141 DLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA 178 (193)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred CcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 986422 1223344445677766665 35554433
No 201
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.72 E-value=5e-05 Score=76.11 Aligned_cols=140 Identities=14% Similarity=0.043 Sum_probs=78.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 464 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~ 464 (589)
.|+|+|.+|||||||++.|+|... .+ .... | ..+..... .+...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~----~v--~~~p----g-----------~Tv~~~~~---------------~~~~~ 46 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQ----RV--GNWP----G-----------VTVEKKTG---------------EFLLG 46 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE----EE--EECT----T-----------SSSEEEEE---------------EEEET
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC----Cc--cCCC----C-----------ceEEEEEE---------------EEEEC
Confidence 689999999999999999976421 11 1000 0 00000000 00112
Q ss_pred CCCccccccCccccccH---------HHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 007789 465 GSDVVLVDTAGRMQDNE---------PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 535 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~---------~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it 535 (589)
+....++||+|-..-.. .+.+... ...+++.+++|-+++. . ..+......+.+.. ...
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~---~~~~~d~vi~VvDas~---~----~~~~~l~~~l~~~~---~pv 113 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSV---IDLEYDCIINVIDACH---L----ERHLYLTSQLFELG---KPV 113 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHH---HHSCCSEEEEEEEGGG---H----HHHHHHHHHHTTSC---SCE
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHH---hhCCCCEEEEEeeCCC---c----hhHHHHHHHHHHcC---CCE
Confidence 33567889988654332 2333332 1248999999877765 1 11223334444332 345
Q ss_pred EEEEccccccccchhh---hhHhHHHhCCCEEEEe--cCCCccc
Q 007789 536 GILLTKFDTIDDKVGA---ALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 536 ~IIlTKlD~~d~k~G~---als~~~~~g~PI~fig--~Gq~v~D 574 (589)
.+++||+|... .-+. +-.+....+.|+..+. +|+++.+
T Consensus 114 ilv~NK~Dl~~-~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~e 156 (256)
T 3iby_A 114 VVALNMMDIAE-HRGISIDTEKLESLLGCSVIPIQAHKNIGIPA 156 (256)
T ss_dssp EEEEECHHHHH-HTTCEECHHHHHHHHCSCEEECBGGGTBSHHH
T ss_pred EEEEEChhcCC-cCCcHHHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 78999999863 3222 2345566789988876 4665543
No 202
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.71 E-value=0.00012 Score=69.76 Aligned_cols=124 Identities=17% Similarity=0.106 Sum_probs=64.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHh
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
.+..|+|+|+.||||||+++.|++-..+. ....+... .... +
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~-------~~~~~~~~-----------~~~~-----~--------------- 52 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP-------TVVSQEPL-----------SAAD-----Y--------------- 52 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC-------BCCCSSCE-----------EETT-----G---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-------eeeecCce-----------EEEE-----e---------------
Confidence 34589999999999999999998733110 00001100 0000 0
Q ss_pred cccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCC-CCHHHHHHHHHHHHHHhhcCCCCCCccEEEEc
Q 007789 462 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-NDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 540 (589)
Q Consensus 462 ~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~G-lD~~~q~~~f~~~l~~l~~~~~~~~it~IIlT 540 (589)
......++||+|....+..+...+.... ..++.+++|-+++.. .........+.+.+............-.++.|
T Consensus 53 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 53 --DGSGVTLVDFPGHVKLRYKLSDYLKTRA--KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp --GGSSCEEEECCCCGGGTHHHHHHHHHHG--GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred --eCceEEEEECCCcHHHHHHHHHHHHhcc--ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEE
Confidence 2456788999998776654444343110 125666666555511 11122223333333222110111133568899
Q ss_pred ccccccc
Q 007789 541 KFDTIDD 547 (589)
Q Consensus 541 KlD~~d~ 547 (589)
|+|....
T Consensus 129 K~Dl~~~ 135 (218)
T 1nrj_B 129 KSELFTA 135 (218)
T ss_dssp CTTSTTC
T ss_pred chHhccc
Confidence 9998643
No 203
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.71 E-value=1.1e-05 Score=88.99 Aligned_cols=152 Identities=16% Similarity=0.084 Sum_probs=83.6
Q ss_pred cccccccCCceEEEEEecCCCcHHHHHHHHHH--hHhhCCcEEEEcccccCccchhhhhHhhh--hccccceeccCCCCC
Q 007789 374 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSVMMAACDTFRSGAVEQLRTHA--RRLQVPIFEKGYEKD 449 (589)
Q Consensus 374 Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAg--ll~~~~GkV~l~~~Dt~RigaveQL~~~~--~~l~v~l~~~~~~~d 449 (589)
+.+.+..+. .++|+|.+|+||||+|+.|.. ++..+.+.|.+..+|..... +..+. .++..++. .+
T Consensus 160 v~ldL~~~p--HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e----l~~~~~lPhl~~~Vv-----td 228 (512)
T 2ius_A 160 VVADLAKMP--HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE----LSVYEGIPHLLTEVV-----TD 228 (512)
T ss_dssp EEEEGGGSC--SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG----GGGGTTCTTBSSSCB-----CS
T ss_pred EEEEcccCc--eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh----hhhhccCCcccceee-----cC
Confidence 445555665 789999999999999999875 34455688888888875421 11111 11111111 12
Q ss_pred HHHH---H----------HHHHHHhcccCCCc---ccc-ccCccccccHH----------HHHHHHhhhhhcCCCEEEEE
Q 007789 450 PAIV---A----------KEAIQEATRNGSDV---VLV-DTAGRMQDNEP----------LMRALSKLIYLNNPDLVLFV 502 (589)
Q Consensus 450 ~~~i---a----------~~al~~a~l~~~d~---vli-DTSGg~qqr~~----------LaraL~kl~~~~~PdlILLV 502 (589)
+... . .+.+..++..++.. ..- ..+||++++.. +++.+. ..|.+++++
T Consensus 229 ~~~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~-----~lP~ivlvI 303 (512)
T 2ius_A 229 MKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLK-----KEPYIVVLV 303 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCC-----CCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccc-----cCCcEEEEE
Confidence 2111 0 11222222222110 011 12566655421 111122 368878888
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 503 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 503 DEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
||+..-++.. ...+.+.+..++..++..|+..|+.|.--
T Consensus 304 DE~~~ll~~~--~~~~~~~l~~Lar~gRa~GI~LIlaTQrp 342 (512)
T 2ius_A 304 DEFADLMMTV--GKKVEELIARLAQKARAAGIHLVLATQRP 342 (512)
T ss_dssp ETHHHHHHHH--HHHHHHHHHHHHHHCGGGTEEEEEEESCC
T ss_pred eCHHHHHhhh--hHHHHHHHHHHHHHhhhCCcEEEEEecCC
Confidence 9997766632 23455677777777777799999888743
No 204
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.71 E-value=0.0003 Score=64.13 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgl 406 (589)
+..|+|+|+.||||||+++.|++-
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999874
No 205
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.71 E-value=4.3e-05 Score=78.37 Aligned_cols=23 Identities=39% Similarity=0.342 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgl 406 (589)
..++|+|++|||||||++.|+|.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 38999999999999999999874
No 206
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.71 E-value=2.1e-05 Score=73.45 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=31.6
Q ss_pred cccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcE
Q 007789 372 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS 413 (589)
Q Consensus 372 ~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~Gk 413 (589)
+++++.+.+| +.+|+|||||||||++..|++++.+..++
T Consensus 18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 4566666554 89999999999999999999988765543
No 207
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=97.70 E-value=4.9e-05 Score=69.11 Aligned_cols=77 Identities=19% Similarity=0.447 Sum_probs=54.7
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHhhhhccccCC--------Cceeec----C----CCCceeeEEEEe
Q 007789 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL--------ASFNYD----S----AGAAYTLKWTFH 64 (589)
Q Consensus 1 Mld~~~i~t~gG~vLW~~~~~~~~~~~~~in~li~~v~leer~~~--------~~~~~~----~----~~~~~~lkw~~~ 64 (589)
|+|+|.|||..|=||+.+.--.-......||++|.+.|..--+-+ ..|.|. + .-.+|+..|...
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 999999999999999984322334566789999999987332211 112221 0 012899999999
Q ss_pred cccceEEEEEecc
Q 007789 65 NELGLVFVAVYQR 77 (589)
Q Consensus 65 ne~~lvfv~vyq~ 77 (589)
+...|+||+-|-.
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 9999999999965
No 208
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.70 E-value=0.0004 Score=62.57 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
..|+|+|+.||||||+++.|++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999986
No 209
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.69 E-value=0.00012 Score=66.02 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+.-|+|+|+.||||||+++.|++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999986
No 210
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.69 E-value=6.1e-05 Score=81.51 Aligned_cols=114 Identities=25% Similarity=0.222 Sum_probs=59.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
..|+|||.+|||||||++.|++- ++. .+.+.. ++..... + ..+..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~------~~~----------~v~~~~------g~t~~~~-~------------~~~~~ 68 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE------RIS----------IVEDTP------GVTRDRI-Y------------SSAEW 68 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE------EEC---------------------------CE-E------------EECTT
T ss_pred CEEEEECCCCCcHHHHHHHHhCC------CCc----------ccCCCC------CcceeEE-E------------EEEEE
Confidence 38999999999999999999761 111 111110 1100000 0 00112
Q ss_pred cCCCccccccCcccc-------ccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccE
Q 007789 464 NGSDVVLVDTAGRMQ-------DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG 536 (589)
Q Consensus 464 ~~~d~vliDTSGg~q-------qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~ 536 (589)
.+....++||+|-.. +-..++.... ..+|.+|||-++..++...+. .....+.... ..-.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~-----~~ad~il~VvD~~~~~~~~d~-----~l~~~l~~~~---~pvi 135 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM-----DEADVIIFMVNGREGVTAADE-----EVAKILYRTK---KPVV 135 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHH-----HHCSEEEEEEESSSCSCHHHH-----HHHHHHTTCC---SCEE
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhH-----hhCCEEEEEEeCCCCCChHHH-----HHHHHHHHcC---CCEE
Confidence 345678899998331 1112222222 278999998888888887653 2223333322 3346
Q ss_pred EEEcccccc
Q 007789 537 ILLTKFDTI 545 (589)
Q Consensus 537 IIlTKlD~~ 545 (589)
++++|+|..
T Consensus 136 lV~NK~D~~ 144 (456)
T 4dcu_A 136 LAVNKLDNT 144 (456)
T ss_dssp EEEECC---
T ss_pred EEEECccch
Confidence 889999986
No 211
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.68 E-value=3.8e-05 Score=90.33 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=54.2
Q ss_pred HHHhcccCC-Ccccccc-CccccccHHHHHHHHhhhhhcC--CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 007789 458 IQEATRNGS-DVVLVDT-AGRMQDNEPLMRALSKLIYLNN--PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 533 (589)
Q Consensus 458 l~~a~l~~~-d~vliDT-SGg~qqr~~LaraL~kl~~~~~--PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~ 533 (589)
+..+++..+ ....+.+ |||++||+.||++|.. + |.++|| ||||+|||+.+....+ +.|..+.+. +
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~-----~~~~~llIL-DEPTagLdp~~~~~L~-~~L~~Lr~~----G 573 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGS-----GLVGVLYVL-DEPSIGLHQRDNRRLI-ETLTRLRDL----G 573 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTT-----CCCSCEEEE-ECTTTTCCHHHHHHHH-HHHHHHHHT----T
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhh-----CCCCcEEEE-eCcccCCCHHHHHHHH-HHHHHHHHc----C
Confidence 445555432 1334545 9999999999999984 6 467776 9999999999876555 778777653 7
Q ss_pred ccEEEEcc
Q 007789 534 IDGILLTK 541 (589)
Q Consensus 534 it~IIlTK 541 (589)
.++|++++
T Consensus 574 ~TVIvVeH 581 (993)
T 2ygr_A 574 NTLIVVEH 581 (993)
T ss_dssp CEEEEECC
T ss_pred CEEEEECC
Confidence 78888877
No 212
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.68 E-value=2.2e-05 Score=74.55 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=26.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHH
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAg 405 (589)
.+++++++..+. ..|+|+|++||||||+++.+++
T Consensus 14 ~~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhc
Confidence 356677766543 3689999999999999999864
No 213
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.68 E-value=0.00019 Score=73.24 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=85.6
Q ss_pred ceEEEEEec-CCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhh-----Hhhhh----------c------cccc
Q 007789 383 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL-----RTHAR----------R------LQVP 440 (589)
Q Consensus 383 p~iI~LVGp-NGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL-----~~~~~----------~------l~v~ 440 (589)
+.+|+|+|+ .|+||||+...||..+...+.+|+++.+|..+...-..+ ..+.+ . -++.
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l~ 171 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFD 171 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTEE
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCEE
Confidence 449999997 489999999999999988888999999998542211110 00000 0 1222
Q ss_pred eeccCC-CCCHHH-----HHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 441 IFEKGY-EKDPAI-----VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 441 l~~~~~-~~d~~~-----ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
+...+. ..++.+ ...++++.+. ..||+++|||+.....-. +..+.. ..|.+|+|-+|... ....
T Consensus 172 vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d--a~~l~~-----~aD~vllVv~~~~~--~~~~ 241 (286)
T 3la6_A 172 LIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTD--AAIVGR-----HVGTTLMVARYAVN--TLKE 241 (286)
T ss_dssp EECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTH--HHHHTT-----TCSEEEEEEETTTS--BHHH
T ss_pred EEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchHH--HHHHHH-----HCCeEEEEEeCCCC--cHHH
Confidence 222222 123332 3345555543 358999999965543211 223332 56778887766432 1122
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
. ...+..+.... ..+.++|++++|.-
T Consensus 242 ~---~~~~~~l~~~g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 242 V---ETSLSRFEQNG--IPVKGVILNSIFRR 267 (286)
T ss_dssp H---HHHHHHHHHTT--CCCCEEEEEEECCC
T ss_pred H---HHHHHHHHhCC--CCEEEEEEcCcccc
Confidence 2 23333333322 46789999999864
No 214
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.68 E-value=1.5e-05 Score=75.01 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.2
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhh-CCcEEEE
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMM 416 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~-~~GkV~l 416 (589)
.|+ +++|+|||||||||++++|++.+.+ ..+.|..
T Consensus 4 ~g~--~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRK--TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCC--EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 466 9999999999999999999998753 3444443
No 215
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.67 E-value=3.5e-05 Score=90.38 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=54.9
Q ss_pred HHHhcccCC-Ccccccc-CccccccHHHHHHHHhhhhhcCC--CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 007789 458 IQEATRNGS-DVVLVDT-AGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 533 (589)
Q Consensus 458 l~~a~l~~~-d~vliDT-SGg~qqr~~LaraL~kl~~~~~P--dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~ 533 (589)
+..+++..+ ....+.+ |||++||+.||++|.. +| +++|| ||||+|||+.+....+ +.|..+.+. +
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~-----~~~~~llIL-DEPTagLdp~~~~~L~-~~L~~Lr~~----G 556 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS-----RLTGVLYVL-DEPSIGLHQRDNDRLI-ATLKSMRDL----G 556 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTT-----CCCSCEEEE-ECTTTTCCGGGHHHHH-HHHHHHHTT----T
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhh-----CCCCCEEEE-eCcccCCCHHHHHHHH-HHHHHHHhC----C
Confidence 555666533 2344555 9999999999999984 64 77777 9999999999876555 778878643 7
Q ss_pred ccEEEEcc
Q 007789 534 IDGILLTK 541 (589)
Q Consensus 534 it~IIlTK 541 (589)
.++|++++
T Consensus 557 ~TVIvVeH 564 (972)
T 2r6f_A 557 NTLIVVEH 564 (972)
T ss_dssp CEEEEECC
T ss_pred CEEEEEec
Confidence 78888887
No 216
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.67 E-value=0.00044 Score=61.88 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
..|+|+|+.||||||+++.+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999986
No 217
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.67 E-value=0.00046 Score=68.61 Aligned_cols=168 Identities=16% Similarity=0.115 Sum_probs=90.2
Q ss_pred eEEEEEec-CCCcHHHHHHHHHHhHhhCCcEEEEcccccCccch--hhhhH---------hhhh----ccccceeccCC-
Q 007789 384 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--VEQLR---------THAR----RLQVPIFEKGY- 446 (589)
Q Consensus 384 ~iI~LVGp-NGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Riga--veQL~---------~~~~----~l~v~l~~~~~- 446 (589)
.+|+|++. -|+||||+...||..+...+.+|++..+|....+. ...+. .+.. .-++.+...+.
T Consensus 19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~~ 98 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQFL 98 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGGG
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEecccc
Confidence 38888765 47999999999999998888899999999754221 10000 0000 00111111100
Q ss_pred --C-------C--CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHH
Q 007789 447 --E-------K--DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 515 (589)
Q Consensus 447 --~-------~--d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 515 (589)
. . .......++++.+....||+++||++++.......+.++. ..|.+++|-+|... .... .
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~------~aD~viiv~~~~~~-s~~~-~ 170 (262)
T 2ph1_A 99 LPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDA------KPTGVVVVSTPQEL-TAVI-V 170 (262)
T ss_dssp STTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHH------CCSEEEEEECSSSC-CHHH-H
T ss_pred CCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhc------cCCeEEEEecCccc-hHHH-H
Confidence 0 0 1123344455544335799999999877653221122222 56778887776532 2222 1
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEEcccccccc----c-----hhhhhHhHHHhCCCEE
Q 007789 516 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDD----K-----VGAALSMVYVSGAPVM 564 (589)
Q Consensus 516 ~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~----k-----~G~als~~~~~g~PI~ 564 (589)
...+..+... ...+-++|++++|.... + ...+-.+....+.|+.
T Consensus 171 ---~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 223 (262)
T 2ph1_A 171 ---EKAINMAEET--NTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFF 223 (262)
T ss_dssp ---HHHHHHHHTT--TCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEE
T ss_pred ---HHHHHHHHhC--CCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeE
Confidence 1233333322 23566899999874210 1 1124455566777743
No 218
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.67 E-value=0.00019 Score=66.11 Aligned_cols=149 Identities=16% Similarity=0.182 Sum_probs=73.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+.-|+|+|+.|||||||++.|.+-.... .+.. +........+.. .
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~----------~~~~-------t~~~~~~~~~~~------------------~ 48 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVD----------EYDP-------TIEDSYRKQVVI------------------D 48 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCC----------CCCT-------TCCEEEEEEEEE------------------T
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCC----------CCCC-------CchheEEEEEEE------------------C
Confidence 4579999999999999999997522100 0000 000000000000 0
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|....+.. ...... ..+.+++|-+.+... .......+...+..+... ....-.+++||+
T Consensus 49 ~~~~~~~i~Dt~G~~~~~~~-~~~~~~-----~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~ 119 (189)
T 4dsu_A 49 GETCLLDILDTAGQEEYSAM-RDQYMR-----TGEGFLCVFAINNTK-SFEDIHHYREQIKRVKDS--EDVPMVLVGNKC 119 (189)
T ss_dssp TEEEEEEEEECCCC---CTT-HHHHHH-----HCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTC--SCCCEEEEEECT
T ss_pred CcEEEEEEEECCCcHHHHHH-HHHHHh-----cCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC--CCCcEEEEEECc
Confidence 01133557899986654432 222232 567777765554321 111222222333332221 113346889999
Q ss_pred cccccc--hhhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDK--VGAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k--~G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|..... .-.+..+....+.|+..+. +|+++.+|
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 120 DLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDA 156 (189)
T ss_dssp TSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred cCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 985322 2344555666788877665 45555443
No 219
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.66 E-value=0.00023 Score=65.58 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=49.9
Q ss_pred ccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccccc
Q 007789 468 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDD 547 (589)
Q Consensus 468 ~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~ 547 (589)
..++||+|....+......+. +.+.+++|-+.+.... ......+...+....... ...-.++.||+|..+.
T Consensus 68 l~i~Dt~G~~~~~~~~~~~~~------~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQYMR------TGDGFLIVYSVTDKAS-FEHVDRFHQLILRVKDRE--SFPMILVANKVDLMHL 138 (183)
T ss_dssp EEEEECCSCGGGCSSHHHHHH------HCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHTSS--CCCEEEEEECTTCSTT
T ss_pred EEEEECCCchhhHHHHHHHHh------cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCC--CCcEEEEEECCCchhc
Confidence 456899886654432222232 6778888766543211 111112222222222111 1234689999997531
Q ss_pred ---chhhhhHhHHHhCCCEEEEe---cCCCccc
Q 007789 548 ---KVGAALSMVYVSGAPVMFVG---CGQSYTD 574 (589)
Q Consensus 548 ---k~G~als~~~~~g~PI~fig---~Gq~v~D 574 (589)
..-.+..+....+.|+..+. +|+++.+
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 139 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred cCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 12334556667788877765 4444443
No 220
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.66 E-value=0.00043 Score=70.32 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=92.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccc-----------hhhhhHh---------hhh-----cc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG-----------AVEQLRT---------HAR-----RL 437 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Rig-----------aveQL~~---------~~~-----~l 437 (589)
+.+|+|+|.-|+||||+...||..+...+.+|++..+|..... ..+-+.. +.+ .-
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~~~ 120 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEGFN 120 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEECGG
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhccCCC
Confidence 4599999999999999999999999888889999999973210 0000000 000 00
Q ss_pred ccceecc-----CCCCC-H-HHHHHHHHHHh-cccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 438 QVPIFEK-----GYEKD-P-AIVAKEAIQEA-TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 438 ~v~l~~~-----~~~~d-~-~~ia~~al~~a-~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
++.+... ..... . .......++.+ -...||+++||++++..... +..++ ...|.+++|-+|..
T Consensus 121 ~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~-~~~~l------~~aD~viiv~~~~~-- 191 (307)
T 3end_A 121 GVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGG-FAAPL------QHADQAVVVTANDF-- 191 (307)
T ss_dssp GCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGG-GGGGG------GTCSEEEEEECSSH--
T ss_pred CceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHH-HHHHH------HHCCEEEEEecCcH--
Confidence 2222211 11111 1 11222344442 23468999999976654321 11122 26788888776632
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEEE
Q 007789 510 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMF 565 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~f 565 (589)
........+.+.+..+.. .....+.++|+++++.- ..+-.+....+.|+.-
T Consensus 192 ~s~~~~~~~~~~l~~~~~-~~~~~~~gvV~N~~~~~----~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSK-NYKVRLAGCVANRSRAT----DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHHHHHTTTT-TCCCEEEEEEEESCSCC----HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHhhh-cCCCceEEEEEecCCcH----HHHHHHHHHcCCCcee
Confidence 122222222233333211 12335568999999863 2344455567888653
No 221
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.65 E-value=0.00023 Score=64.20 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgl 406 (589)
.-|+|+|+.||||||+++.|.+-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999763
No 222
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.64 E-value=0.00036 Score=70.46 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=83.6
Q ss_pred ceEEEEEec-CCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhh-----Hhhhhc----------------cccc
Q 007789 383 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL-----RTHARR----------------LQVP 440 (589)
Q Consensus 383 p~iI~LVGp-NGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL-----~~~~~~----------------l~v~ 440 (589)
+.+|+|+|+ .|+||||+...||..+...+.+|++..+|..+...-..+ ..+.+. -++.
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l~ 161 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDLD 161 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTEE
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCEE
Confidence 349999987 689999999999999888888999999997653211110 000000 1222
Q ss_pred eeccCC-CCCHHH-----HHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 441 IFEKGY-EKDPAI-----VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 441 l~~~~~-~~d~~~-----ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
+...+. ..++.+ ...++++.+. ..||+++||+++...... +..+.. ..|.+++|-+|.. .....
T Consensus 162 vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d--~~~l~~-----~aD~vilVv~~~~--~~~~~ 231 (271)
T 3bfv_A 162 VLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTD--AQLFSK-----FTGNVVYVVNSEN--NNKDE 231 (271)
T ss_dssp EECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSH--HHHHHH-----HHCEEEEEEETTS--CCHHH
T ss_pred EEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHH--HHHHHH-----HCCEEEEEEeCCC--CcHHH
Confidence 222221 223332 2344555553 368999999966544221 222222 3356777666533 22222
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
.. ..+..+... ...+-++|++++|.-
T Consensus 232 ~~---~~~~~l~~~--~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 232 VK---KGKELIEAT--GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HH---HHHHHHHTT--TCEEEEEEEEEECC-
T ss_pred HH---HHHHHHHhC--CCCEEEEEEeCCcCC
Confidence 22 333333322 235678999999974
No 223
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.63 E-value=1.9e-05 Score=77.34 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=33.8
Q ss_pred cccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 376 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 376 ~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
....+|. +|+|+|+|||||||+++.|+++ +|+|.+.+.+.
T Consensus 15 ~~~~~g~--~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPF--TVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCE--EEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCCce--EEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 3445677 9999999999999999999997 78898887664
No 224
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.63 E-value=0.00018 Score=65.63 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+..|+|+|+.||||||+++.|.+
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999986
No 225
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.63 E-value=0.00021 Score=75.45 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=33.9
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 418 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~ 418 (589)
+++|+ ++.|+||+|+|||||+..|+..+.+.+|+|++..
T Consensus 58 i~~G~--i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 58 YPRGR--IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp EETTE--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCc--EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44677 9999999999999999999999888888886654
No 226
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.62 E-value=0.00037 Score=62.69 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
.-|+|+|+.||||||+++.|.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999975
No 227
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.62 E-value=4.9e-06 Score=79.48 Aligned_cols=161 Identities=20% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcc--cccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHH
Q 007789 381 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA--CDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 458 (589)
Q Consensus 381 Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~--~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al 458 (589)
|. ++.++||.|+||||++..++..+...+.+|++.. .|. |.+. .+...+ +++....... .+. .+++
T Consensus 3 g~--i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~-r~~~-~~i~s~---~g~~~~~~~~-~~~----~~~~ 70 (184)
T 2orw_A 3 GK--LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDS-RYHS-TMIVSH---SGNGVEAHVI-ERP----EEMR 70 (184)
T ss_dssp CC--EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CC-CEECC-------CEECEEE-SSG----GGGG
T ss_pred cE--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecccc-ccCc-ccEEec---CCCceeeEEE-CCH----HHHH
Confidence 55 8999999999999999888876666677787742 333 3221 122221 2221110000 111 1222
Q ss_pred HHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHH--HHHHHhhcCCCCCCccE
Q 007789 459 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN--QKLADLSSSPNPQLIDG 536 (589)
Q Consensus 459 ~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~--~~l~~l~~~~~~~~it~ 536 (589)
+.+. .+++++++|.+..... .+...|..+... +-++++. |++..-+.+.|. ..|..+++
T Consensus 71 ~~~~-~~~dvviIDE~Q~~~~--~~~~~l~~l~~~-~~~Vi~~------Gl~~~f~~~~f~~~~~ll~~ad--------- 131 (184)
T 2orw_A 71 KYIE-EDTRGVFIDEVQFFNP--SLFEVVKDLLDR-GIDVFCA------GLDLTHKQNPFETTALLLSLAD--------- 131 (184)
T ss_dssp GGCC-TTEEEEEECCGGGSCT--THHHHHHHHHHT-TCEEEEE------EESBCTTSCBCHHHHHHHHHCS---------
T ss_pred HHhc-CCCCEEEEECcccCCH--HHHHHHHHHHHC-CCCEEEE------eeccccccCCccchHHHHHHhh---------
Confidence 2222 2567899999876632 244444444333 3333332 221110001110 11222221
Q ss_pred EEEccccccccchh---hhhHhHHHhCCCEEEEecCCCcc
Q 007789 537 ILLTKFDTIDDKVG---AALSMVYVSGAPVMFVGCGQSYT 573 (589)
Q Consensus 537 IIlTKlD~~d~k~G---~als~~~~~g~PI~fig~Gq~v~ 573 (589)
.++|+..++...| +..+.....+.|+.+||.++.|.
T Consensus 132 -~v~~l~~ic~~cg~~~a~~~~r~~~~~~~~~ig~~~~Y~ 170 (184)
T 2orw_A 132 -TVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYI 170 (184)
T ss_dssp -EEEECCBCCTTTCCSCBCEEEECSSCSCSCCCCSTTTEE
T ss_pred -heEEeeeecCCCCCeeceeEEEEcCCCCEEEECCCCcEE
Confidence 3588888865577 77777777789999999999874
No 228
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.62 E-value=0.00018 Score=67.09 Aligned_cols=143 Identities=14% Similarity=0.139 Sum_probs=71.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|..|||||||++.|.+-..... +. ...++.+...... ..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------~~-----------~t~~~~~~~~~~~-------------~~ 65 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDR----------TE-----------ATIGVDFRERAVD-------------ID 65 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSS----------CC-----------CCCSCCEEEEEEE-------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCC----------CC-----------CCcceEEEEEEEE-------------EC
Confidence 45899999999999999999976211100 00 0001111000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|..+.+..+.....+ +.+.+++|-+++...... ....+...+..... .....-.+++||+
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~-----~~d~iilv~D~~~~~s~~-~~~~~~~~i~~~~~--~~~~piilv~nK~ 137 (189)
T 1z06_A 66 GERIKIQLWDTAGQERFRKSMVQHYYR-----NVHAVVFVYDMTNMASFH-SLPAWIEECKQHLL--ANDIPRILVGNKC 137 (189)
T ss_dssp TEEEEEEEEECCCSHHHHTTTHHHHHT-----TCCEEEEEEETTCHHHHH-THHHHHHHHHHHCC--CSCCCEEEEEECT
T ss_pred CEEEEEEEEECCCchhhhhhhhHHHhc-----CCCEEEEEEECcCHHHHH-HHHHHHHHHHHhcC--CCCCCEEEEEECc
Confidence 012356788999865443233444442 788888886665422111 11111122222221 1113356899999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG 567 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig 567 (589)
|..+.+ .-.+..+....+.|+..+.
T Consensus 138 Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 165 (189)
T 1z06_A 138 DLRSAIQVPTDLAQKFADTHSMPLFETS 165 (189)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCCEEECC
T ss_pred cccccceeCHHHHHHHHHHcCCEEEEEe
Confidence 986322 1223344455677766554
No 229
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.62 E-value=8.4e-05 Score=67.00 Aligned_cols=147 Identities=16% Similarity=0.239 Sum_probs=74.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+.-|+|+|+.||||||+++.|++-.... .+. ...+..+...... ..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~----------~~~-----------~t~~~~~~~~~~~-------------~~ 50 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTK----------DYK-----------KTIGVDFLERQIQ-------------VN 50 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC----------CSS-----------CCCSSSEEEEEEE-------------ET
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC----------CCC-----------CceEEEEEEEEEE-------------EC
Confidence 4578999999999999999998621110 000 0001111000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...+...++||+|....+ .+..... ...+.+++|-+++.... ......+...+.... ....-.+++||+
T Consensus 51 ~~~~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~----~~~piilv~nK~ 119 (168)
T 1z2a_A 51 DEDVRLMLWDTAGQEEFD-AITKAYY-----RGAQACVLVFSTTDRES-FEAISSWREKVVAEV----GDIPTALVQNKI 119 (168)
T ss_dssp TEEEEEEEECCTTGGGTT-CCCHHHH-----TTCCEEEEEEETTCHHH-HHTHHHHHHHHHHHH----CSCCEEEEEECG
T ss_pred CEEEEEEEEcCCCcHhHH-HHHHHHh-----cCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECc
Confidence 012356788999865432 2233333 27788888766654221 111112222222222 113456899999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
|....+ .-.+..+....+.|+..+. +|+++.+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSE 156 (168)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred ccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence 986322 2334455556677766665 4555443
No 230
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.61 E-value=0.00031 Score=65.00 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=78.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCC-cE-EEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHK-VS-VMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~-Gk-V~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
.-|+|+|+.|||||||++.|.+...... +. +.+. .. +....++.++...... .
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~-~~------------~~~t~~~~~~~~~~~~------------~ 69 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLA-TE------------DERTLFFDFLPLDIGE------------V 69 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEE-CS------------SCEEEEEEECCSSCCC------------S
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccc-cc------------cccceeeeeccccccc------------c
Confidence 5799999999999999998887543321 11 0000 00 0011111111110000 0
Q ss_pred cccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcC--CCCCCccEEEE
Q 007789 462 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS--PNPQLIDGILL 539 (589)
Q Consensus 462 ~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~--~~~~~it~IIl 539 (589)
....+...++||+|..+.+. +..... .+.+.+++|-+++.+.-.. ....|..+...+... ......-.++.
T Consensus 70 ~~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~D~~~~~~~~-~~~s~~~l~~~l~~~~~~~~~~piilv~ 142 (198)
T 3t1o_A 70 KGFKTRFHLYTVPGQVFYNA-SRKLIL-----RGVDGIVFVADSAPNRLRA-NAESMRNMRENLAEYGLTLDDVPIVIQV 142 (198)
T ss_dssp SSCEEEEEEEECCSCCSCSH-HHHHHT-----TTCCEEEEEEECCGGGHHH-HHHHHHHHHHHHHHTTCCTTSSCEEEEE
T ss_pred cCCceEEEEEeCCChHHHHH-HHHHHH-----hcCCEEEEEEECCcchhhH-hHHHHHHHHHHHHhhccccCCCCEEEEE
Confidence 01123567889998766553 333333 2788888887776332111 123333332222221 11223456889
Q ss_pred cccccccc-chhhhhHhHHHhCC-CEEEEe--cCCCcccc
Q 007789 540 TKFDTIDD-KVGAALSMVYVSGA-PVMFVG--CGQSYTDL 575 (589)
Q Consensus 540 TKlD~~d~-k~G~als~~~~~g~-PI~fig--~Gq~v~DL 575 (589)
||+|.... ..-.+.......+. |+..+. +|+++.++
T Consensus 143 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 182 (198)
T 3t1o_A 143 NKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFET 182 (198)
T ss_dssp ECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHH
T ss_pred EchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHH
Confidence 99998532 11223334444566 655554 45555443
No 231
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.60 E-value=3.2e-05 Score=73.21 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=75.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
...|+|+|+.|||||||++.|.+-..... + ....++.+...... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------~-----------~~t~~~~~~~~~~~-------------~~ 53 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTND----------Y-----------ISTIGVDFKIKTVE-------------LD 53 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTT----------C-----------CCSSCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC----------C-----------CCcccceeEEEEEE-------------EC
Confidence 35799999999999999999976221100 0 00011111000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|....+. +..... ...+.+|+|-+++...... ....+...+.... .....-.+++||+
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~vilv~d~~~~~s~~-~~~~~~~~i~~~~---~~~~piilv~nK~ 123 (206)
T 2bcg_Y 54 GKTVKLQIWDTAGQERFRT-ITSSYY-----RGSHGIIIVYDVTDQESFN-GVKMWLQEIDRYA---TSTVLKLLVGNKC 123 (206)
T ss_dssp TEEEEEEEECCTTTTTTTC-CCGGGG-----TTCSEEEEEEETTCHHHHH-HHHHHHHHHHHHS---CTTCEEEEEEECT
T ss_pred CEEEEEEEEeCCChHHHHH-HHHHhc-----cCCCEEEEEEECcCHHHHH-HHHHHHHHHHHhc---CCCCCEEEEEECC
Confidence 0123567889988654321 111111 3678888877665432211 1122212232222 1223456899999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|....+ .-.+..+....+.|+.++. +|+++.+|
T Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 161 (206)
T 2bcg_Y 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA 161 (206)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 986422 1233445556678877765 46555443
No 232
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.59 E-value=8.5e-05 Score=74.43 Aligned_cols=142 Identities=22% Similarity=0.288 Sum_probs=79.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
...|+|+|.+||||||+++.|+|-.. .+.. + .| ..+...... +.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~------~~~~---~-pg-----------~tv~~~~~~---------------~~ 48 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ------YVAN---W-PG-----------VTVEKKEGV---------------FT 48 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE------EEEE---C-TT-----------SCCEEEEEE---------------EE
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC------cccC---C-CC-----------ceEEEEEEE---------------EE
Confidence 34799999999999999999986321 1110 0 00 000000000 01
Q ss_pred ccCCCccccccCcccccc-----HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEE
Q 007789 463 RNGSDVVLVDTAGRMQDN-----EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 537 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr-----~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~I 537 (589)
..+....++||+|-..-. ..+.+.+. ....++.+++|-+++.. +. .. ..+..+.+.. ....+
T Consensus 49 ~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~---~~~~~d~ii~V~D~t~~-~~--~~----~~~~~l~~~~---~pvil 115 (258)
T 3a1s_A 49 YKGYTINLIDLPGTYSLGYSSIDEKIARDYL---LKGDADLVILVADSVNP-EQ--SL----YLLLEILEME---KKVIL 115 (258)
T ss_dssp ETTEEEEEEECCCCSSCCSSSHHHHHHHHHH---HHSCCSEEEEEEETTSC-HH--HH----HHHHHHHTTT---CCEEE
T ss_pred ECCeEEEEEECCCcCccCCCCHHHHHHHHHH---hhcCCCEEEEEeCCCch-hh--HH----HHHHHHHhcC---CCEEE
Confidence 123456788998865432 23333332 12489999998877653 11 11 2233333322 34578
Q ss_pred EEccccccccchhh---hhHhHHHhCCCEEEEe--cCCCccc
Q 007789 538 LLTKFDTIDDKVGA---ALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 538 IlTKlD~~d~k~G~---als~~~~~g~PI~fig--~Gq~v~D 574 (589)
++||+|... +-+. +-.+....|.|+..+. +|+++.+
T Consensus 116 v~NK~Dl~~-~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 116 AMTAIDEAK-KTGMKIDRYELQKHLGIPVVFTSSVTGEGLEE 156 (258)
T ss_dssp EEECHHHHH-HTTCCBCHHHHHHHHCSCEEECCTTTCTTHHH
T ss_pred EEECcCCCC-ccchHHHHHHHHHHcCCCEEEEEeeCCcCHHH
Confidence 999999863 3222 3455667799988887 5766654
No 233
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.58 E-value=0.00017 Score=73.21 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHh
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgl 406 (589)
.|+|+|..||||||+++.|+|.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 7999999999999999999985
No 234
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.58 E-value=0.0002 Score=65.65 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=71.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|+.||||||+++.|++--.... + ....+..+...... ..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------~-----------~~~~~~~~~~~~~~-------------~~ 57 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEF----------Q-----------ESTIGAAFFSQTLA-------------VN 57 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTT----------S-----------CCCSCCSEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCc----------C-----------CCCceeEEEEEEEE-------------EC
Confidence 35799999999999999999975211100 0 00001111000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...+...++||+|....+. +..... ...+.+++|-+++..... .... ..+..+.........-.+++||+
T Consensus 58 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~s~-~~~~---~~~~~~~~~~~~~~p~i~v~nK~ 127 (181)
T 2efe_B 58 DATVKFEIWDTAGQERYHS-LAPMYY-----RGAAAAIIVFDVTNQASF-ERAK---KWVQELQAQGNPNMVMALAGNKS 127 (181)
T ss_dssp TEEEEEEEEECCCSGGGGG-GTHHHH-----TTCSEEEEEEETTCHHHH-HHHH---HHHHHHHHHSCTTCEEEEEEECT
T ss_pred CEEEEEEEEeCCCChhhhh-hhHHHh-----ccCCEEEEEEECCCHHHH-HHHH---HHHHHHHHhcCCCCcEEEEEECC
Confidence 0123567889998655432 233333 277888887665532211 1111 22233322211223456889999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG 567 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig 567 (589)
|..+.+ .-.+..+....+.|+..+.
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (181)
T 2efe_B 128 DLLDARKVTAEDAQTYAQENGLFFMETS 155 (181)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEE
Confidence 986322 1233444555677765554
No 235
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.58 E-value=0.00017 Score=73.02 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=76.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|++||||||+++.|+|..... + + + + ++.+... .+ .+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v-~-------~-~-p-------------g~tv~~~-~~------------~~~ 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV-G-------N-W-P-------------GVTVERK-SG------------LVK 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC-C-------S-S-S-------------CCCCSCE-EE------------ECT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc-c-------C-C-C-------------CCcEEEE-EE------------EEe
Confidence 3579999999999999999998742100 0 0 0 0 1110000 00 001
Q ss_pred ccCCCccccccCcccccc-----HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEE
Q 007789 463 RNGSDVVLVDTAGRMQDN-----EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 537 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr-----~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~I 537 (589)
. +....++||+|-..-. ..+.+... ...+++.+++|-+++.. . . +...+..+.+.. ....+
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~---~~~~~d~vi~V~D~t~~---e-~---~~~~~~~l~~~~---~p~il 112 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYL---LSQRADSILNVVDATNL---E-R---NLYLTTQLIETG---IPVTI 112 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHH---HTTCCSEEEEEEEGGGH---H-H---HHHHHHHHHHTC---SCEEE
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHH---hcCCCCEEEEEecCCch---H-h---HHHHHHHHHhcC---CCEEE
Confidence 1 3456788998865422 23444333 12379999988777652 1 1 112223333322 34568
Q ss_pred EEccccccccchh---hhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 538 LLTKFDTIDDKVG---AALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 538 IlTKlD~~d~k~G---~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
+++|+|.. .+.+ .+-.+....+.|+..+. +|+++.+
T Consensus 113 v~NK~Dl~-~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 113 ALNMIDVL-DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp EEECHHHH-HHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred EEEChhhC-CcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHH
Confidence 89999986 3322 22345556788987775 4666543
No 236
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.57 E-value=0.00022 Score=66.78 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=74.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
...|+|+|+.||||||+++.|++-..... + ....+..+...... ..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------~-----------~~~~~~~~~~~~~~-------------~~ 68 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHN----------I-----------SPTIGASFMTKTVP-------------CG 68 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTT----------C-----------CCCSSEEEEEEEEE-------------CS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC----------c-----------CCCcceeEEEEEEE-------------eC
Confidence 35799999999999999999986321000 0 00001111000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...+...++||+|....+. +..... ...+.+++|-+++... .......+...+.... .....-.+++||+
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~iilV~d~~~~~-s~~~~~~~~~~i~~~~---~~~~piiiv~NK~ 138 (192)
T 2fg5_A 69 NELHKFLIWDTAGQERFHS-LAPMYY-----RGSAAAVIVYDITKQD-SFYTLKKWVKELKEHG---PENIVMAIAGNKC 138 (192)
T ss_dssp SSEEEEEEEEECCSGGGGG-GTHHHH-----TTCSEEEEEEETTCTH-HHHHHHHHHHHHHHHS---CTTCEEEEEEECG
T ss_pred CEEEEEEEEcCCCchhhHh-hhHHhh-----ccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhC---CCCCcEEEEEECc
Confidence 1123567889998665442 223333 2778888876665432 2222222222332222 1123456889999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCcc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYT 573 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~ 573 (589)
|..+.+ .-.+..+....+.|+..+. +|+++.
T Consensus 139 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp GGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 986322 2234445555676766555 344443
No 237
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.57 E-value=0.00081 Score=65.88 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=91.4
Q ss_pred eEEEEEec-CCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhh-------Hh----------hhhc-------cc
Q 007789 384 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL-------RT----------HARR-------LQ 438 (589)
Q Consensus 384 ~iI~LVGp-NGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL-------~~----------~~~~-------l~ 438 (589)
.+|+|+|. -|+||||+...||..+...+.+|++..+|......-..+ .. +.+. -+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 37888765 569999999999999988888999999997321111000 00 0000 12
Q ss_pred cceeccCCCCC----HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHH
Q 007789 439 VPIFEKGYEKD----PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 514 (589)
Q Consensus 439 v~l~~~~~~~d----~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 514 (589)
+.+...+...+ ......++++.+....||++++|++++... ....++. ..|.+++|-+|. ...
T Consensus 83 l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~--~~~~~l~------~ad~vi~v~~~~----~~s- 149 (260)
T 3q9l_A 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET--GALMALY------FADEAIITTNPE----VSS- 149 (260)
T ss_dssp EEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSH--HHHHHHH------TCSEEEEEECSS----HHH-
T ss_pred EEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCH--HHHHHHH------hCCEEEEEecCC----hhH-
Confidence 22221111110 123345566655433799999999776643 2222333 778888877763 222
Q ss_pred HHHHHHHHHHhhcCCC------CCCccEEEEccccccccchhhh---hHhHHHhCCCEE
Q 007789 515 LSKFNQKLADLSSSPN------PQLIDGILLTKFDTIDDKVGAA---LSMVYVSGAPVM 564 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~------~~~it~IIlTKlD~~d~k~G~a---ls~~~~~g~PI~ 564 (589)
.......+..+..... ....-++|+++++......+.. -.+...++.|+.
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T 3q9l_A 150 VRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLV 208 (260)
T ss_dssp HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCceE
Confidence 2222233433332221 1135689999998631111111 344555688764
No 238
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.57 E-value=0.00075 Score=66.92 Aligned_cols=145 Identities=21% Similarity=0.216 Sum_probs=80.5
Q ss_pred ceEEEEEec-CCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhH-------------hhhhc------------
Q 007789 383 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR-------------THARR------------ 436 (589)
Q Consensus 383 p~iI~LVGp-NGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~-------------~~~~~------------ 436 (589)
+.+|+|++. -|+||||+...||..+. .+.+|++..+|... +....+. .+.+.
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~ 104 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA-SITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTII 104 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC-HHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGCE
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC-CHHHHhhccccccccCcccccHHHHhcCCCCHHHhhc
Confidence 458888764 56999999999999998 88899999999753 1111000 00000
Q ss_pred ---cccceeccCC-----CC----CHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEec
Q 007789 437 ---LQVPIFEKGY-----EK----DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 504 (589)
Q Consensus 437 ---l~v~l~~~~~-----~~----d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDE 504 (589)
-++.+...+. .. .......++++.+. ..||+++||++++.- .....+|. ..|.+++|-+
T Consensus 105 ~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~--~~~~~~l~------~aD~vivv~~ 175 (267)
T 3k9g_A 105 NVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLD--VTLKNALL------CSDYVIIPMT 175 (267)
T ss_dssp EEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCS--HHHHHHHT------TCSEEEEEEE
T ss_pred cCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCcc--HHHHHHHH------HCCeEEEEeC
Confidence 0111111100 00 01234455666553 469999999977663 22333333 6788888777
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 505 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 505 Pt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
|. .........+.+.+. .......+ ++|+|++..
T Consensus 176 ~~--~~s~~~~~~~~~~l~---~~~~~~~~-~vv~N~~~~ 209 (267)
T 3k9g_A 176 AE--KWAVESLDLFNFFVR---KLNLFLPI-FLIITRFKK 209 (267)
T ss_dssp SC--TTHHHHHHHHHHHHH---TTTCCCCE-EEEEEEECT
T ss_pred CC--hHHHHHHHHHHHHHH---HHhccCCE-EEEEecccC
Confidence 63 223333333333333 32222233 589999854
No 239
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.57 E-value=9.9e-05 Score=67.61 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=71.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|+.||||||+++.|.+-..... .+. ...++.+...... ..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~---------~~~-----------~t~~~~~~~~~~~-------------~~ 56 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAG---------TFI-----------STVGIDFRNKVLD-------------VD 56 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCC---------CCC-----------CCCSCEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC---------CcC-----------CceeeEEEEEEEE-------------EC
Confidence 45799999999999999999976321100 000 0001111000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|....+. +..... .+.+.+++|-+++...... ....+...+..... ....-.+++||+
T Consensus 57 ~~~~~~~~~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~---~~~piilv~nK~ 126 (180)
T 2g6b_A 57 GVKVKLQMWDTAGQERFRS-VTHAYY-----RDAHALLLLYDVTNKASFD-NIQAWLTEIHEYAQ---HDVALMLLGNKV 126 (180)
T ss_dssp TEEEEEEEEECCCC---------CCG-----GGCSEEEEEEETTCHHHHH-THHHHHHHHHHHSC---TTCEEEEEEECC
T ss_pred CEEEEEEEEeCCCcHHHHH-HHHHHc-----cCCCEEEEEEECCCHHHHH-HHHHHHHHHHHhCC---CCCcEEEEEECc
Confidence 0123466789998654332 222122 2678888876665432111 11122122322222 123456899999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
|....+ .-.+..+....+.|+..+. +|+++.+
T Consensus 127 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp STTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred ccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 986422 1233445555677876665 3444443
No 240
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.57 E-value=5.2e-05 Score=88.20 Aligned_cols=74 Identities=12% Similarity=-0.020 Sum_probs=54.5
Q ss_pred HHHHhcccCC-Ccccccc-CccccccHHHHHHHHhhhhhcCCC--EEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007789 457 AIQEATRNGS-DVVLVDT-AGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 532 (589)
Q Consensus 457 al~~a~l~~~-d~vliDT-SGg~qqr~~LaraL~kl~~~~~Pd--lILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~ 532 (589)
.+..+++... ....+.+ |||++||+.||++|.. +|+ ++|| ||||+|||+.+....+ +.|..+...
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~-----~p~~~llIL-DEPT~~Ld~~~~~~L~-~~l~~L~~~---- 430 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYS-----NLFGVVYVL-DEPSAGLHPADTEALL-SALENLKRG---- 430 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTT-----CCCSCEEEE-ECTTTTCCGGGHHHHH-HHHHHHHTT----
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhh-----CCCCeEEEe-eCccccCCHHHHHHHH-HHHHHHHHc----
Confidence 3445565433 1334444 9999999999999994 884 6666 9999999999875555 777777653
Q ss_pred CccEEEEcc
Q 007789 533 LIDGILLTK 541 (589)
Q Consensus 533 ~it~IIlTK 541 (589)
+.++|++++
T Consensus 431 G~TVIvVeH 439 (842)
T 2vf7_A 431 GNSLFVVEH 439 (842)
T ss_dssp TCEEEEECC
T ss_pred CCEEEEEcC
Confidence 678888877
No 241
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.57 E-value=9.8e-05 Score=66.69 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=72.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
.-|+|+|+.||||||+++.|.+--.... +. .+.........+. . .-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~-------~~~~~~~~~~~~~--~---------------~~ 49 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPS----------FI-------TTIGIDFKIKTVD--I---------------NG 49 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC------------------------CCEEEEEEE--S---------------SS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCC----------CC-------CccceeEEEEEEE--E---------------CC
Confidence 4689999999999999999986211000 00 0000000000000 0 00
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
..+...++||+|....+. +..... .+.+.+++|-+++.... ......+...+..... ....-.+++||+|
T Consensus 50 ~~~~~~l~D~~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~---~~~piilv~nK~D 119 (170)
T 1g16_A 50 KKVKLQIWDTAGQERFRT-ITTAYY-----RGAMGIILVYDITDERT-FTNIKQWFKTVNEHAN---DEAQLLLVGNKSD 119 (170)
T ss_dssp CEEEEEEECCTTGGGTSC-CCHHHH-----TTEEEEEEEEETTCHHH-HHTHHHHHHHHHHHSC---TTCEEEEEEECTT
T ss_pred EEEEEEEEeCCCChhhhh-hHHHHh-----ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC---CCCcEEEEEECcc
Confidence 113466789998655332 222233 26787777766543221 1111222222322221 1234568999999
Q ss_pred ccccch--hhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 544 TIDDKV--GAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 544 ~~d~k~--G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
.....+ -.+..+....+.|+..+. +|+++.++
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 120 METRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp CTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred CCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 742211 233445556678877665 45555443
No 242
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.57 E-value=0.00036 Score=62.73 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
.-|+|+|+.||||||+++.|.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999985
No 243
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.56 E-value=0.00026 Score=72.51 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=84.2
Q ss_pred ceEEEEEec-CCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhH-----hhhhc----------------cccc
Q 007789 383 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR-----THARR----------------LQVP 440 (589)
Q Consensus 383 p~iI~LVGp-NGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~-----~~~~~----------------l~v~ 440 (589)
+.+|+|+|+ .|+||||+...||..+...+.+|++..+|..+...-..+. .+.+. -++.
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l~ 183 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFD 183 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTEE
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCEE
Confidence 349999998 5899999999999988888889999999985422111110 00000 1222
Q ss_pred eeccCC-CCCHH-----HHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC-CCCCHHH
Q 007789 441 IFEKGY-EKDPA-----IVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL-VGNDAVD 513 (589)
Q Consensus 441 l~~~~~-~~d~~-----~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt-~GlD~~~ 513 (589)
+...+. ..++. ....++++.+. ..||+++||+++...... +..+.. ..|.+++|-.+. ...+...
T Consensus 184 vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d--~~~l~~-----~ad~vilV~~~~~~~~~~~~ 255 (299)
T 3cio_A 184 VITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSD--AAVVGR-----SVGTSLLVARFGLNTAKEVS 255 (299)
T ss_dssp EECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTH--HHHHGG-----GCSEEEEEEETTTSCTTHHH
T ss_pred EEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHH--HHHHHH-----HCCEEEEEEcCCCChHHHHH
Confidence 222221 22332 23345555553 468999999976654221 222332 456777776653 2333322
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
..+..+... ...+.++|++++|..
T Consensus 256 ------~~~~~l~~~--~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 256 ------LSMQRLEQA--GVNIKGAILNGVIKR 279 (299)
T ss_dssp ------HHHHHHHHT--TCCCCCEEEEECCCC
T ss_pred ------HHHHHHHhC--CCCeEEEEEeCCccC
Confidence 223333322 234678999999974
No 244
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.56 E-value=0.00029 Score=65.61 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=74.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
..-|+|+|+.|||||||++.|.+-... +.+.. +........+. ..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~----------~~~~~-------t~~~~~~~~~~------------------~~ 52 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFR----------DTYIP-------TIEDTYRQVIS------------------CD 52 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCC----------CTTSC-------CCCEEEEEEEE------------------ET
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCC----------CcccC-------ccccceeEEEE------------------EC
Confidence 458999999999999999999861100 00000 00000000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...+...++||+|....+ .+.+.... ..+.+++|-+++... .......+...+..+...... ..-.+++||+
T Consensus 53 ~~~~~~~l~Dt~G~~~~~-~~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~-~piilv~nK~ 124 (199)
T 2gf0_A 53 KSVCTLQITDTTGSHQFP-AMQRLSIS-----KGHAFILVFSVTSKQ-SLEELGPIYKLIVQIKGSVED-IPVMLVGNKC 124 (199)
T ss_dssp TEEEEEEEEECCGGGSCH-HHHHHHHH-----HCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHSCGGG-SCEEEEEECT
T ss_pred CEEEEEEEEeCCChHHhH-HHHHHhhc-----cCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEECc
Confidence 112346789999866544 33333332 567777775554321 111122222334333321111 2347999999
Q ss_pred cccccch--hhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 543 DTIDDKV--GAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 543 D~~d~k~--G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
|.....+ -.+..+....+.|+..+. +|+++.+
T Consensus 125 Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 125 DETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp TCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred cCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Confidence 9863222 233444555677765554 4554443
No 245
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.56 E-value=2.8e-05 Score=76.73 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=38.0
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.+++++++.++.| ++|+||||+||||+++.|++.+. .+.|.+.+.+.
T Consensus 39 ~~~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence 3567777777655 79999999999999999999875 67788877654
No 246
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.56 E-value=0.0015 Score=65.63 Aligned_cols=172 Identities=17% Similarity=0.185 Sum_probs=90.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchh------------hhhHh--------hhh-----ccc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV------------EQLRT--------HAR-----RLQ 438 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Rigav------------eQL~~--------~~~-----~l~ 438 (589)
.+|+|.|.-|+||||+..-||..+...+.+|++..+|....... +-+.. +.+ .-+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 82 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYGG 82 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGGG
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCCC
Confidence 47888899999999999999999988888999999997431110 00000 000 001
Q ss_pred cceeccCCCC----C-HHHH--HHHHHHHhc--ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC
Q 007789 439 VPIFEKGYEK----D-PAIV--AKEAIQEAT--RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 509 (589)
Q Consensus 439 v~l~~~~~~~----d-~~~i--a~~al~~a~--l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 509 (589)
+.+...+... . .... ....++.+. ...||+++||++|....+...+. +.. ...|.+++|-+|..
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~-~~~----~~aD~viiv~~~~~-- 155 (289)
T 2afh_E 83 VKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMP-IRE----NKAQEIYIVCSGEM-- 155 (289)
T ss_dssp CEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHH-HHT----TCCCEEEEEECSSH--
T ss_pred eEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccchhhhh-hhh----hhCCEEEEEecCCH--
Confidence 2222111100 0 1111 112333332 23689999999876543321111 211 36788888766532
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchhhhhHhHHHhCCCEE
Q 007789 510 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 564 (589)
Q Consensus 510 D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G~als~~~~~g~PI~ 564 (589)
........+.+.+..+.... ...+.++|+++.+.. ...-.+-.+....+.|+.
T Consensus 156 ~s~~~~~~~~~~l~~~~~~~-~~~~~gvv~N~~~~~-~~~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 156 MAMYAANNISKGIVKYANSG-SVRLGGLICNSRNTD-REDELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-CCEEEEEEEECCCCT-THHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCceEEEEEecCCch-hHHHHHHHHHHHcCcccc
Confidence 12222222334444443321 224568999998753 222333444456787754
No 247
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.55 E-value=7.8e-05 Score=83.96 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+..|+|||..|||||||++.|.+
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~ 189 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLY 189 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHS
T ss_pred ceEEEEEECCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 248
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.55 E-value=0.00027 Score=64.32 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
..|+|+|+.||||||+++.|++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999975
No 249
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.54 E-value=0.00011 Score=66.66 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
.-|+|+|+.||||||+++.+++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 250
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.53 E-value=3.2e-05 Score=77.70 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=38.2
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.+++++++.++.| ++|+||||+||||+++.|++.+. .+.|.+.+.++
T Consensus 63 ~~l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~ 109 (278)
T 1iy2_A 63 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 109 (278)
T ss_dssp HHHHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence 3567778877555 79999999999999999999875 67788877654
No 251
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.52 E-value=0.00028 Score=78.09 Aligned_cols=150 Identities=15% Similarity=0.067 Sum_probs=74.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhh--CCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~--~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
..|+|+|..|||||||+..|++.... ..|.| .+.+.++....+-.. .....++.+... ...+
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v--~~~~~~~~~~~D~~~-~E~~rGiTi~~~-------------~~~~ 77 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTV--KGRGSNQHAKSDWME-MEKQRGISITTS-------------VMQF 77 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------------------------------CCTT-------------EEEE
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCcccccee--ecCccccceeeccch-hcccCCcceeee-------------EEEE
Confidence 48999999999999999999864211 11111 111111110000000 000001111000 0001
Q ss_pred cccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 462 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 462 ~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
...++...++||+|-..-.....+.+. ..|.+|+|-+++.|..... . ..+..+.... ..-.+++||
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~~l~------~aD~~IlVvDa~~g~~~~t--~---~~~~~~~~~~---ipiivviNK 143 (529)
T 2h5e_A 78 PYHDCLVNLLDTPGHEDFSEDTYRTLT------AVDCCLMVIDAAKGVEDRT--R---KLMEVTRLRD---TPILTFMNK 143 (529)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHHGGG------GCSEEEEEEETTTCSCHHH--H---HHHHHHTTTT---CCEEEEEEC
T ss_pred EECCeEEEEEECCCChhHHHHHHHHHH------HCCEEEEEEeCCccchHHH--H---HHHHHHHHcC---CCEEEEEcC
Confidence 123456789999998665544445443 7888998888998876543 2 2222222221 224689999
Q ss_pred ccccccch-hhhhHhHHHhCCCE
Q 007789 542 FDTIDDKV-GAALSMVYVSGAPV 563 (589)
Q Consensus 542 lD~~d~k~-G~als~~~~~g~PI 563 (589)
+|...... -.+-.+....+.++
T Consensus 144 ~Dl~~~~~~~~~~~i~~~l~~~~ 166 (529)
T 2h5e_A 144 LDRDIRDPMELLDEVENELKIGC 166 (529)
T ss_dssp TTSCCSCHHHHHHHHHHHHCCEE
T ss_pred cCCccccHHHHHHHHHHHhCCCc
Confidence 99864332 22334445556554
No 252
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.52 E-value=0.00014 Score=68.67 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=75.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
...|+|+|+.|||||||++.|++--... .+. ...+..+...... ..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~~-------------~~ 65 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNP----------SFI-----------TTIGIDFKIKTVD-------------IN 65 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCC----------SSS-----------CCCSCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc----------ccC-----------CcccceEEEEEEE-------------EC
Confidence 3579999999999999999998621100 000 0001111000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|....+. +..... ...+.+++|-+++..... .....+...+..... ....-.+++||+
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~---~~~piilv~nK~ 135 (213)
T 3cph_A 66 GKKVKLQLWDTAGQERFRT-ITTAYY-----RGAMGIILVYDVTDERTF-TNIKQWFKTVNEHAN---DEAQLLLVGNKS 135 (213)
T ss_dssp TEEEEEEEECCTTGGGGTC-CCHHHH-----TTCSEEEEEEETTCHHHH-HTHHHHHHHHHHHTT---TCSEEEEEEECT
T ss_pred CEEEEEEEEeCCCcHHHHH-HHHHHh-----ccCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC---CCCCEEEEEECC
Confidence 0114567889998655432 222333 278888887666543211 111122222322221 113456899999
Q ss_pred cccccch--hhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDKV--GAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k~--G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|.....+ -.+..+....+.|+..+. +|+.+.+|
T Consensus 136 Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 136 DMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp TCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9842211 233445555678877765 46666544
No 253
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.52 E-value=2.7e-05 Score=72.74 Aligned_cols=148 Identities=13% Similarity=0.079 Sum_probs=73.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
..-|+|+|+.||||||+++.|++--.... +. ...+..+...... ..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------~~-----------~t~~~~~~~~~~~-------------~~ 67 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPA----------FV-----------STVGIDFKVKTVY-------------RH 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS----------CC-----------CCCCCEEEEEEEE-------------ET
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC----------cC-----------CceeEEEEEEEEE-------------EC
Confidence 35799999999999999999986311100 00 0001110000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...+...++||+|....+.. ..... ...+.+++|-+++.... ......+...+.... .....-.+++||+
T Consensus 68 ~~~~~~~l~Dt~G~~~~~~~-~~~~~-----~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~ 137 (189)
T 2gf9_A 68 DKRIKLQIWDTAGQERYRTI-TTAYY-----RGAMGFLLMYDIANQES-FAAVQDWATQIKTYS---WDNAQVILVGNKC 137 (189)
T ss_dssp TEEEEEEEEECCSCCSSCCS-GGGGG-----TTCSEEEEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECT
T ss_pred CeEEEEEEEeCCCcHHHhhh-HHHhc-----cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECc
Confidence 11234668899886553321 12222 27788888766654321 111112222232221 1123457999999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
|....+ .-.+..+....+.|+..+. +|+++.+
T Consensus 138 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQ 174 (189)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred ccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 986432 1234445556677766665 3444443
No 254
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.52 E-value=6.6e-05 Score=69.60 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=30.5
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
+|+ +|+|+|+|||||||+++.|++.+ |.+.+.+-+..
T Consensus 7 ~g~--~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 7 DHH--IYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TSE--EEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCc--EEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 455 99999999999999999999976 66777765543
No 255
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.52 E-value=0.00024 Score=66.13 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHH
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAg 405 (589)
.+..|+|+|+.||||||+++.|++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999976
No 256
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.52 E-value=4.4e-05 Score=76.54 Aligned_cols=141 Identities=22% Similarity=0.185 Sum_probs=75.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
..|+|+|++|||||||++.|+|.... +. ... + ..+...... +..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~----~~--~~~----~-----------~t~~~~~~~---------------~~~ 47 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQH----VG--NWP----G-----------VTVEKKEGI---------------MEY 47 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEE----EE--ECT----T-----------SSCEEEEEE---------------EEE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcc----cC--CCC----C-----------eEEEeeEEE---------------EEE
Confidence 47999999999999999999874321 11 000 0 001100000 011
Q ss_pred cCCCccccccCccccccH-----HHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 007789 464 NGSDVVLVDTAGRMQDNE-----PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 538 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~-----~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~II 538 (589)
.+....++||+|-..-.. .+.+... ...+++.+++|-+++.+. ... ..+..+..... ..-.++
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~---~~~~~d~vi~v~D~~~~~---~~~----~~~~~~~~~~~--~p~ilv 115 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFI---LDGNADVIVDIVDSTCLM---RNL----FLTLELFEMEV--KNIILV 115 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHH---HTTCCSEEEEEEEGGGHH---HHH----HHHHHHHHTTC--CSEEEE
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhh---hccCCcEEEEEecCCcch---hhH----HHHHHHHhcCC--CCEEEE
Confidence 233467888988543221 1222222 224899999988877641 111 12222222220 234689
Q ss_pred Eccccccccchhh---hhHhHHHhCCCEEEEe--cCCCcc
Q 007789 539 LTKFDTIDDKVGA---ALSMVYVSGAPVMFVG--CGQSYT 573 (589)
Q Consensus 539 lTKlD~~d~k~G~---als~~~~~g~PI~fig--~Gq~v~ 573 (589)
+||+|... +-+. .-.+....+.|+..+. +|+++.
T Consensus 116 ~NK~Dl~~-~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 116 LNKFDLLK-KKGAKIDIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp EECHHHHH-HHTCCCCHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred EEChhcCc-ccccHHHHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 99999652 2221 3456667788987765 455543
No 257
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=0.0007 Score=63.17 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=75.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
.-|+|+|+.|||||||++.|++-...... ..-.+.+.+. ..+.+ ..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~-------------~~~~~--------------------~~ 69 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAF-VSTVGIDFKV-------------KTVYR--------------------HE 69 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCE-EEEETTTEEE-------------EEEEE--------------------TT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCccc-CCCeeeEEEE-------------EEEEE--------------------CC
Confidence 57999999999999999999863221111 1111111100 00000 01
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
..+...++||+|....+ .+..... .+.+.+++|-+++... .......+...+.... .....-.++.||+|
T Consensus 70 ~~~~~~i~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~---~~~~piilv~nK~D 139 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYR-TITTAYY-----RGAMGFILMYDITNEE-SFNAVQDWATQIKTYS---WDNAQVILVGNKCD 139 (191)
T ss_dssp TTEEEEEECHHHHHHCH-HHHHHHH-----TTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHS---CTTCEEEEEEECTT
T ss_pred EEEEEEEEeCCChHHHH-HHHHHHH-----ccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhc---CCCCCEEEEEECCC
Confidence 12346788999855433 3333344 2788888876665321 1112222223332222 11234568899999
Q ss_pred ccccch---hhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 544 TIDDKV---GAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 544 ~~d~k~---G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
....+. -.+..+....+.|+..+. +|+++.+
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ 175 (191)
T ss_dssp CGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 753322 223344556677766554 3554443
No 258
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.51 E-value=0.0005 Score=69.32 Aligned_cols=150 Identities=16% Similarity=0.146 Sum_probs=84.0
Q ss_pred EEEEEe---cCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccch--hh---hh----Hhhhhc--------------cc
Q 007789 385 VVVFVG---VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--VE---QL----RTHARR--------------LQ 438 (589)
Q Consensus 385 iI~LVG---pNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Riga--ve---QL----~~~~~~--------------l~ 438 (589)
+|+|++ .-|+||||+...||..+...+.+|++..+|...... +. .. ..+.+. -+
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 115 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTDN 115 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESSSS
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccCCC
Confidence 777776 889999999999999988888899999999854211 10 00 000000 01
Q ss_pred cceeccCCCCC-------------HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecC
Q 007789 439 VPIFEKGYEKD-------------PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 505 (589)
Q Consensus 439 v~l~~~~~~~d-------------~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEP 505 (589)
+.+...+.... ......++++.+. ..||+++||++++... ....+|. ..|.+++|-+|
T Consensus 116 l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~--~~~~~l~------~aD~viiv~~~ 186 (298)
T 2oze_A 116 LDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSV--YTNNAIV------ASDYVMIPLQA 186 (298)
T ss_dssp EEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSH--HHHHHHH------HCSEEEEEECG
T ss_pred eEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccH--HHHHHHH------HCCeEEEEecC
Confidence 11221111000 0122344555443 4699999999777643 2233444 46778887776
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCC-CCCCccEEEEcccccc
Q 007789 506 LVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDTI 545 (589)
Q Consensus 506 t~GlD~~~q~~~f~~~l~~l~~~~-~~~~it~IIlTKlD~~ 545 (589)
.. .+.. ....+.+.+..+.... ....+-++|+|++|.-
T Consensus 187 ~~-~s~~-~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 187 EE-ESTN-NIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GG-CCHH-HHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred cH-HHHH-HHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 43 2222 2223334444433211 1235678999999974
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=4.9e-05 Score=73.29 Aligned_cols=29 Identities=31% Similarity=0.273 Sum_probs=26.2
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHhh
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 409 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~~ 409 (589)
++|+ +|+|+|||||||||+++.|++.+.+
T Consensus 6 ~~g~--~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGL--LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCC--EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCc--EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3577 9999999999999999999998875
No 260
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.49 E-value=0.00012 Score=80.64 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=62.4
Q ss_pred cccc-CccccccHHHHHHHHhhhhhcCC--CEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccccc
Q 007789 470 LVDT-AGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 546 (589)
Q Consensus 470 liDT-SGg~qqr~~LaraL~kl~~~~~P--dlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d 546 (589)
+-.. |||++|++.||++|.. +| +++|| ||||+|||+..... +.+.|..+.. +.++|++|+--.+
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~-----~~~~~~lil-DEp~~gld~~~~~~-i~~~l~~~~~-----~~~vi~itH~~~~- 460 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVL-----GADTPSVVF-DEVDAGIGGAAAIA-VAEQLSRLAD-----TRQVLVVTHLAQI- 460 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHH-----CCCSSEEEE-CSCSSSCCTHHHHH-HHHHHHHHHH-----HSEEEEECCCHHH-
T ss_pred HHhcCCHHHHHHHHHHHHHHh-----CCCCCEEEE-eCCcCCCCHHHHHH-HHHHHHHHhC-----CCEEEEEecCHHH-
Confidence 3445 9999999999999994 89 99888 99999999987644 4477777753 5677888873211
Q ss_pred cchhhhhHhHHHhCCCEEEE----ecCCCcccccCCCHH
Q 007789 547 DKVGAALSMVYVSGAPVMFV----GCGQSYTDLKKLNVK 581 (589)
Q Consensus 547 ~k~G~als~~~~~g~PI~fi----g~Gq~v~DL~~~~~~ 581 (589)
+. ..-.+.++ ..|..+..+..++.+
T Consensus 461 ------~~----~~d~~~~~~~~~~~~~~~~~~~~l~~~ 489 (517)
T 4ad8_A 461 ------AA----RAHHHYKVEKQVEDGRTVSHVRLLTGD 489 (517)
T ss_dssp ------HH----HSSEEEEEECCEETTEECCEEEECCSH
T ss_pred ------HH----hCCEEEEEeccccCCceeeeeeeCCcc
Confidence 11 13466677 445555566655443
No 261
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.48 E-value=0.00028 Score=66.34 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=52.0
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|....+ .+..... .+.+.+++|-+++... .......+...+.... .....-.+++||+|..
T Consensus 57 ~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 57 IKLQIWDTAGLERYR-TITTAYY-----RGAMGFILMYDITNEE-SFNAVQDWSTQIKTYS---WDNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEEEEECCSGGGH-HHHHTTG-----GGCSEEEEEEETTCHH-HHHHHHHHHHHHHHHS---CSSCEEEEEEECTTCT
T ss_pred EEEEEEECCCchhhc-chHHHhh-----cCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhc---CCCCCEEEEEECcccC
Confidence 356788999876543 2332222 2677888876655432 1111222222232222 1123456899999986
Q ss_pred ccch---hhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 546 DDKV---GAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 546 d~k~---G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
..+. -.+..+....+.|+..+. +|+++.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161 (203)
T ss_dssp TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred cccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 4321 233445556677766655 46655443
No 262
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.47 E-value=0.00017 Score=67.48 Aligned_cols=149 Identities=14% Similarity=0.132 Sum_probs=74.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
..-|+|+|+.||||||+++.|++--...... .-.+.+ .....+.. .
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~----------------~~~~~~~~-----------------~ 66 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVE----------------FGARMVNI-----------------D 66 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSS----------------EEEEEEEE-----------------T
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-Ccccce----------------eEEEEEEE-----------------C
Confidence 3579999999999999999998621110000 000000 00000000 0
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|....+. +..... .+.+.+++|-+++..... ......+..+.........-.+++||+
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~s~----~~~~~~l~~i~~~~~~~~piilv~nK~ 136 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRS-ITRSYY-----RGAAGALLVYDITRRETF----NHLTSWLEDARQHSSSNMVIMLIGNKS 136 (191)
T ss_dssp TEEEEEEEECCTTGGGTSC-CCHHHH-----TTCSEEEEEEETTCHHHH----HTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred CEEEEEEEEECCCchhhhh-hHHHHh-----ccCCEEEEEEECCCHHHH----HHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 0123467889988655332 222233 278888887666542211 111122222222111123446889999
Q ss_pred cccccc---hhhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k---~G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|....+ .-.+..+....+.|+..+. +|+++.++
T Consensus 137 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 137 DLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174 (191)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred ccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 985321 2234445556677777665 45555443
No 263
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.46 E-value=0.0005 Score=66.55 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=33.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 386 VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 386 I~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
|+|.|.-|+||||+..-||..+...+.+|++..+|.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 666899999999999999999988889999999997
No 264
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.46 E-value=0.00042 Score=74.95 Aligned_cols=148 Identities=20% Similarity=0.262 Sum_probs=79.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHh
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
.+..++|+|.+||||||+++.|++.-. ...... +|.. ....... +
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~-----~~~~~~----~gtt------~~~~~~~--------------------~ 238 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEER-----VIVSNV----AGTT------RDAVDTS--------------------F 238 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT-----EEECC----------------CTTSEE--------------------E
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCc-----cccCCC----CCeE------EEEEEEE--------------------E
Confidence 345899999999999999999975311 111000 0000 0000000 1
Q ss_pred cccCCCccccccCccc--------cccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 007789 462 TRNGSDVVLVDTAGRM--------QDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 533 (589)
Q Consensus 462 ~l~~~d~vliDTSGg~--------qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~ 533 (589)
...+....++||+|-. +.+...++.+.. ....+.+|+|.+++.+....+. .+ +..+.... .
T Consensus 239 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~---~~~ad~~llviD~~~~~~~~~~--~~---~~~~~~~~---~ 307 (456)
T 4dcu_A 239 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA---IDRSEVVAVVLDGEEGIIEQDK--RI---AGYAHEAG---K 307 (456)
T ss_dssp EETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH---HHHCSEEEEEEETTTCCCHHHH--HH---HHHHHHTT---C
T ss_pred EECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH---HhhCCEEEEEEeCCCCcCHHHH--HH---HHHHHHcC---C
Confidence 1123356789999821 233334444321 1267888888888888765432 22 22222222 3
Q ss_pred ccEEEEccccccccch---hhhhHhHHH-----hCCCEEEEe--cCCCcccc
Q 007789 534 IDGILLTKFDTIDDKV---GAALSMVYV-----SGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 534 it~IIlTKlD~~d~k~---G~als~~~~-----~g~PI~fig--~Gq~v~DL 575 (589)
.-.++++|+|....+. -.+...... .+.|+.++. +|+++.+|
T Consensus 308 ~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 359 (456)
T 4dcu_A 308 AVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTL 359 (456)
T ss_dssp EEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGH
T ss_pred CEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHH
Confidence 3468999999874321 111222222 257888887 68887764
No 265
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.46 E-value=1.8e-05 Score=78.90 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.3
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHH---HhHhhCCcEEE
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVA---YWLLQHKVSVM 415 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLA---gll~~~~GkV~ 415 (589)
..|. +|+|+|||||||||+++.|+ |+..++.|.|.
T Consensus 25 ~~g~--~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAP--VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSC--EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 4667 99999999999999999999 88888888776
No 266
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.46 E-value=0.00038 Score=69.02 Aligned_cols=147 Identities=18% Similarity=0.079 Sum_probs=74.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHh
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
.+..|+|||.+|||||||++.|.+--...... ...+. +....... +
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~-~~~~~------------T~~~~~~~-~-------------------- 65 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRL-GATSV------------TRACTTGS-R-------------------- 65 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC----------------------CCSCEEEE-E--------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccC-CCCCc------------cccEEEEE-E--------------------
Confidence 34689999999999999999998632110000 00000 00000000 0
Q ss_pred cccCCCccccccCcc--------ccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 007789 462 TRNGSDVVLVDTAGR--------MQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 533 (589)
Q Consensus 462 ~l~~~d~vliDTSGg--------~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~ 533 (589)
...+....++||+|- ......+.+++.. ....++.+|+|-+++. ....+. ..+ +.+..+........
T Consensus 66 ~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~--~~~~~d~il~V~d~~~-~~~~~~-~~~-~~l~~~~~~~~~~~ 140 (247)
T 3lxw_A 66 RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLL--SAPGPHALLLVTQLGR-FTAQDQ-QAV-RQVRDMFGEDVLKW 140 (247)
T ss_dssp EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHH--HTTCCSEEEEEEETTB-CCHHHH-HHH-HHHHHHHCGGGGGG
T ss_pred EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHh--cCCCCCEEEEEEeCCC-CCHHHH-HHH-HHHHHHhChhhhcc
Confidence 112345678999985 4444455555421 1248999999877753 544332 222 33333321110112
Q ss_pred ccEEEEccccccccchh---------hhhHhHHHhCCCEEEEe
Q 007789 534 IDGILLTKFDTIDDKVG---------AALSMVYVSGAPVMFVG 567 (589)
Q Consensus 534 it~IIlTKlD~~d~k~G---------~als~~~~~g~PI~fig 567 (589)
.-.++++|.|..+...- .+-.+...++.+..++.
T Consensus 141 ~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~ 183 (247)
T 3lxw_A 141 MVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFD 183 (247)
T ss_dssp EEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECC
T ss_pred EEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEe
Confidence 34577888887532221 23445555676655543
No 267
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.46 E-value=0.00036 Score=69.14 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=81.7
Q ss_pred eEEEEEe-cCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhh-----Hhhhh-----c--------cccceecc
Q 007789 384 YVVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL-----RTHAR-----R--------LQVPIFEK 444 (589)
Q Consensus 384 ~iI~LVG-pNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL-----~~~~~-----~--------l~v~l~~~ 444 (589)
.+|+|++ .-|+||||+...||..+...+.+|++..+|... .....+ ..+.+ . -++.+...
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~-~~~~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~vlp~ 85 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG-NATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPA 85 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHTTCCCSCCHHHHHTTCCGGGTCEEETTEEEECC
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCc-CHHHHhCCCCCCCHHHHHcCCCHHHHccccCCEEEEeC
Confidence 4899985 558999999999999998888899999999742 111000 00000 0 11222221
Q ss_pred CCCCCHHHHH-------HHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHH
Q 007789 445 GYEKDPAIVA-------KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 517 (589)
Q Consensus 445 ~~~~d~~~ia-------~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 517 (589)
+....... ....+.+....||+++||++++... ....+|. ..|.+++|-+|.. ........
T Consensus 86 --~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~--~~~~~l~------~aD~viiv~~~~~--~s~~~~~~ 153 (257)
T 1wcv_1 86 --TPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSP--LTLNALA------AAEGVVVPVQAEY--YALEGVAG 153 (257)
T ss_dssp --CTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCH--HHHHHHH------HCSEEEEEEESST--HHHHHHHH
T ss_pred --ChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCH--HHHHHHH------HCCeEEEEecCch--HHHHHHHH
Confidence 12221110 1111222226799999999777542 2233343 4677888766632 22222333
Q ss_pred HHHHHHHhhcCC-CCCCccEEEEcccccc
Q 007789 518 FNQKLADLSSSP-NPQLIDGILLTKFDTI 545 (589)
Q Consensus 518 f~~~l~~l~~~~-~~~~it~IIlTKlD~~ 545 (589)
+.+.+..+.... ....+-++|+++++.-
T Consensus 154 ~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 154 LLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 334555443221 1234568999999864
No 268
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.46 E-value=0.00018 Score=67.06 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
++.|+|+|++||||||+++.|++
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 269
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.45 E-value=0.00019 Score=65.51 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+..|+|+|+.||||||+++.|++
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44899999999999999999975
No 270
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.44 E-value=0.00037 Score=71.47 Aligned_cols=119 Identities=23% Similarity=0.202 Sum_probs=66.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccc--ccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--DTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~--Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
.|+|||.+|||||||++.|.+.- +.+... .+.| ....++ + .
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~------~~ivs~~~~tTr----------~~i~~i--~-------------------~ 51 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK------VAPISPRPQTTR----------KRLRGI--L-------------------T 51 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC------CSCCCSSSCCCC----------SCEEEE--E-------------------E
T ss_pred EEEEECCCCCCHHHHHHHHhCCc------eeeecCCCCcee----------EEEEEE--E-------------------E
Confidence 79999999999999999998621 111100 0111 000000 0 0
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhh--hhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLI--YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 540 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~--~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlT 540 (589)
..+....++||+|-...+..+-..+.... .....|.+|+|-+++.+....+. .+ +..+.... ......+++|
T Consensus 52 ~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~--~i---~~~l~~~~-~~~p~ilV~N 125 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDE--LV---ARALKPLV-GKVPILLVGN 125 (301)
T ss_dssp ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHH--HH---HHHHGGGT-TTSCEEEEEE
T ss_pred eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHH--HH---HHHHHhhc-CCCCEEEEEE
Confidence 12345678999986654323322222111 12478999999889888776532 22 22232221 1134578999
Q ss_pred cccccc
Q 007789 541 KFDTID 546 (589)
Q Consensus 541 KlD~~d 546 (589)
|+|...
T Consensus 126 K~Dl~~ 131 (301)
T 1wf3_A 126 KLDAAK 131 (301)
T ss_dssp CGGGCS
T ss_pred CcccCC
Confidence 999863
No 271
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.44 E-value=0.00042 Score=66.09 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
...|+|+|..|||||||++.|++
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 272
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.44 E-value=0.00066 Score=63.85 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHH
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAg 405 (589)
.+..|+|+|+.|||||||++.|++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999999976
No 273
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.44 E-value=0.00024 Score=66.01 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=70.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|..||||||+++.|++-.... .+.. +........+.. .
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~----------~~~~-------t~~~~~~~~~~~------------------~ 65 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVD----------EYDP-------TIEDSYRKQVVI------------------D 65 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS----------CCCT-------TCCEEEEEEEEE------------------T
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcc----------ccCC-------ccceEEEEEEEE------------------C
Confidence 4589999999999999999998621100 0000 000000000000 0
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
...+...++||+|....+. +..... ...+.+++|-..+... .......+...+..+.... ...-.+++||+
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~ 136 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSA-MRDQYM-----RTGEGFLCVFAINNSK-SFADINLYREQIKRVKDSD--DVPMVLVGNKC 136 (190)
T ss_dssp TEEEEEEEEECCC------------C-----TTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCS--CCCEEEEEECT
T ss_pred CEEEEEEEEECCChHHHHH-HHHHhh-----CcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCC--CCeEEEEEECC
Confidence 0124567899998654332 222222 2677777765544322 1112222223333333211 12346999999
Q ss_pred ccccc--chhhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 543 DTIDD--KVGAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 543 D~~d~--k~G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
|.... ..-.+..+....+.|+..+. +|+.+.+
T Consensus 137 Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 137 DLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVED 172 (190)
T ss_dssp TCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred cCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 97531 12334455566688876665 4555443
No 274
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.43 E-value=0.0021 Score=61.95 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=82.6
Q ss_pred EEEEE-ecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 385 VVVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 385 iI~LV-GpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
+|+|+ +--|+||||+...||..+...+ +|++..+|...... .-+.. +.+...+... + .++.+ .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~--~~l~~~vi~~----~-------~l~~l-~ 65 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR--GSLPFKVVDE----R-------QAAKY-A 65 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH--SCCSSEEEEG----G-------GHHHH-G
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC--CCCCcceeCH----H-------HHHHh-h
Confidence 56676 4569999999999999998877 99999999754211 10100 1111111110 0 23333 2
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
..+|++++|++++.... ....++. ..|.++++-+|.. ........+.+.+..+. ... -++|+++++
T Consensus 66 ~~yD~viiD~p~~~~~~-~~~~~l~------~aD~viiv~~~~~--~~~~~~~~~~~~l~~~~----~~~-~~vv~N~~~ 131 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE-DLEALAD------GCDLLVIPSTPDA--LALDALMLTIETLQKLG----NNR-FRILLTIIP 131 (209)
T ss_dssp GGCSEEEEEEECCCSSS-HHHHHHH------TSSEEEEEECSSH--HHHHHHHHHHHHHHHTC----SSS-EEEEECSBC
T ss_pred hcCCEEEEeCCCCcCcH-HHHHHHH------HCCEEEEEecCCc--hhHHHHHHHHHHHHhcc----CCC-EEEEEEecC
Confidence 46899999997772222 1222333 7788888777642 12222222223333322 112 579999999
Q ss_pred ccc-cchhhhhHhHHHhCCCE
Q 007789 544 TID-DKVGAALSMVYVSGAPV 563 (589)
Q Consensus 544 ~~d-~k~G~als~~~~~g~PI 563 (589)
... ...-.+.......+.|+
T Consensus 132 ~~~~~~~~~~~~~l~~~g~~v 152 (209)
T 3cwq_A 132 PYPSKDGDEARQLLTTAGLPL 152 (209)
T ss_dssp CTTSCHHHHHHHHHHHTTCCB
T ss_pred CccchHHHHHHHHHHHcCCch
Confidence 752 11223344444467665
No 275
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.43 E-value=0.00024 Score=64.77 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=51.7
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|....+... .... ...+.+++|-+++.... . ......+..+.... ....-.+++||+|..
T Consensus 58 ~~~~i~Dt~G~~~~~~~~-~~~~-----~~~d~~i~v~d~~~~~s-~---~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTIT-STYY-----RGTHGVIVVYDVTSAES-F---VNVKRWLHEINQNC-DDVCRILVGNKNDDP 126 (181)
T ss_dssp EEEEEEEETTGGGCSSCC-GGGG-----TTCSEEEEEEETTCHHH-H---HHHHHHHHHHHHHC-TTSEEEEEEECTTCG
T ss_pred EEEEEEcCCCchhhhhhH-HHHh-----ccCCEEEEEEECCCHHH-H---HHHHHHHHHHHHhC-CCCCEEEEEECCCCc
Confidence 346678998855433211 1111 26788888766654321 1 11122233332221 123346899999976
Q ss_pred ccch---hhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 546 DDKV---GAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 546 d~k~---G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
..+. -.+.......+.|+..+. +|+++.+|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 3321 334555666688877765 35554443
No 276
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=0.00026 Score=65.74 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=61.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHh
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
+...|+|+|+.||||||+++.|++--. +.. ..+ ++ ..... +
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~-----~~~--~~t--~~-------------~~~~~-----------------~ 55 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEV-----VHT--SPT--IG-------------SNVEE-----------------I 55 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSC-----EEE--ECC--SC-------------SSCEE-----------------E
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-----CcC--cCC--Cc-------------cceEE-----------------E
Confidence 345899999999999999999984111 000 001 01 00000 0
Q ss_pred cccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC-CCCCccEEEEc
Q 007789 462 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLT 540 (589)
Q Consensus 462 ~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~-~~~~it~IIlT 540 (589)
...+....++||+|..+.+. +..... .+.+.+++|-+++...........+ ..+.... .....-.+++|
T Consensus 56 ~~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~----~~~~~~~~~~~~piilv~N 125 (187)
T 1zj6_A 56 VINNTRFLMWDIGGQESLRS-SWNTYY-----TNTEFVIVVVDSTDRERISVTREEL----YKMLAHEDLRKAGLLIFAN 125 (187)
T ss_dssp EETTEEEEEEECCC----CG-GGHHHH-----TTCCEEEEEEETTCTTTHHHHHHHH----HHHHTSGGGTTCEEEEEEE
T ss_pred EECCEEEEEEECCCCHhHHH-HHHHHh-----cCCCEEEEEEeCCCHHHHHHHHHHH----HHHHhchhhCCCeEEEEEE
Confidence 01234567889998765443 222333 2788888887777654333332222 2232210 01234578999
Q ss_pred ccccc
Q 007789 541 KFDTI 545 (589)
Q Consensus 541 KlD~~ 545 (589)
|+|..
T Consensus 126 K~Dl~ 130 (187)
T 1zj6_A 126 KQDVK 130 (187)
T ss_dssp CTTST
T ss_pred CCCCc
Confidence 99986
No 277
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.43 E-value=3.6e-05 Score=79.56 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=32.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH--------hhCCcEEEEccccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL--------LQHKVSVMMAACDT 421 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll--------~~~~GkV~l~~~Dt 421 (589)
+++|+|+|||||||+|+.|+++. .++.|+|.+.+.++
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred EEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 89999999999999999999986 66788888887665
No 278
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.43 E-value=6.8e-05 Score=79.69 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=38.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEE
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 416 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l 416 (589)
..+|+++++.++.|+ +++|+||||+||||+++.|++.+ +|.+..
T Consensus 156 ~~~l~~~~~~i~~~~--~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKR--YWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCC--EEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHHhcccccCCCC--EEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 357888999999999 99999999999999999999964 577765
No 279
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.43 E-value=3.9e-05 Score=77.04 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=35.5
Q ss_pred ccccccccccccc---CCceEEEEEecCCCcHHHHHHHHHHhHh
Q 007789 368 IDILRDVHAAKEQ---RKPYVVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 368 i~iL~~Is~~i~~---Gep~iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
..+|++++|.+.+ |+ +|+|+|++||||||+++.|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999998 99 999999999999999999998763
No 280
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.42 E-value=9.2e-05 Score=82.43 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=33.8
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCc-EEE-Ecc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVM-MAA 418 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G-kV~-l~~ 418 (589)
+.+|+ +++|+|+|||||||+++.|++.+.+.+| +|. +.+
T Consensus 366 ~~~G~--iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 366 ERQGF--TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGSCE--EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred cccce--EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 45777 9999999999999999999999999886 786 444
No 281
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.42 E-value=0.00071 Score=73.76 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgl 406 (589)
...|+|+|..|+|||||++.|.+.
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999875
No 282
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.42 E-value=1e-05 Score=83.90 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=28.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhH----hhCCcEEEEcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWL----LQHKVSVMMAA 418 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll----~~~~GkV~l~~ 418 (589)
..++|+||||+||||+++.||+.+ .+..|.+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 379999999999999999999988 55555554433
No 283
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.41 E-value=0.0002 Score=64.71 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+..|+|+|+.||||||+++.+++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999986
No 284
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.41 E-value=0.00043 Score=62.29 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=61.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 464 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~ 464 (589)
-|+|+|+.||||||+++.+++-..... ..| ++ ..... +...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~-------~~t--~~-----------~~~~~-------------------~~~~ 42 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT-------IPT--IG-----------FNVET-------------------VEYK 42 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-------CCC--SS-----------CCEEE-------------------EECS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc-------cCc--Cc-----------eeEEE-------------------EEEC
Confidence 489999999999999999975211100 000 00 00000 0112
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC-CCCCccEEEEcccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFD 543 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~-~~~~it~IIlTKlD 543 (589)
+....++||+|....+ .+..... .+.+.+++|-+++......... ..+..+.... .....-.++.||+|
T Consensus 43 ~~~~~i~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIR-PLWRHYF-----QNTQGLIFVVDSNDRERVNEAR----EELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp SCEEEEEECCCCGGGH-HHHHHHT-----TTCSEEEEEEETTCGGGHHHHH----HHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEEcCCChhhH-HHHHHHh-----ccCCEEEEEEECCCHHHHHHHH----HHHHHHHhchhhcCCeEEEEEECcC
Confidence 3557789999876543 3333333 3788888887666543222222 2233332211 11234578999999
Q ss_pred ccc
Q 007789 544 TID 546 (589)
Q Consensus 544 ~~d 546 (589)
...
T Consensus 113 l~~ 115 (164)
T 1r8s_A 113 LPN 115 (164)
T ss_dssp STT
T ss_pred CcC
Confidence 863
No 285
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.41 E-value=7.6e-05 Score=70.10 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=35.3
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 423 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R 423 (589)
.|. +|+|+|++||||||+++.|+..+.+.+++|.+...|..|
T Consensus 12 ~~~--~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 12 KGI--VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CCE--EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCc--EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 444 999999999999999999999999888888766555443
No 286
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.41 E-value=7.3e-05 Score=69.32 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgl 406 (589)
..|+|+|++|||||||++.|++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999874
No 287
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.40 E-value=0.0002 Score=66.96 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+.-|+|+|..||||||+++.+++
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 288
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.39 E-value=0.00046 Score=63.54 Aligned_cols=100 Identities=17% Similarity=0.080 Sum_probs=52.3
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|....+. +..... .+.+.+++|-+++....... ...+...+...... ....-.+++||+|..
T Consensus 70 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~--~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRS-LTTAFF-----RDAMGFLLLFDLTNEQSFLN-VRNWISQLQMHAYS--ENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEECCSGGGHH-HHHHTT-----TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSSS--SSCCEEEEEECTTCG
T ss_pred EEEEEEeCCCcHHHHH-HHHHHH-----cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC--CCCCEEEEEECcccc
Confidence 4577899998765433 333333 27888888766654321111 11121222222210 123456899999986
Q ss_pred ccc---hhhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 546 DDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 546 d~k---~G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
..+ .-.+..+....+.|+..+. +|+++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 174 (195)
T 3bc1_A 141 DQRAVKEEEARELAEKYGIPYFETSAANGTNISH 174 (195)
T ss_dssp GGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred cccccCHHHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 322 1234445556688876665 3555443
No 289
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.39 E-value=0.00037 Score=66.08 Aligned_cols=99 Identities=9% Similarity=0.087 Sum_probs=51.5
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|..+.+ .+..... .+.+.+++|-+++.... ..... ..+..+.........-.++.||+|..
T Consensus 78 ~~l~i~Dt~G~~~~~-~~~~~~~-----~~~d~iilv~D~~~~~s-~~~~~---~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 78 VKLQIWDTAGQERFR-TITQSYY-----RSANGAILAYDITKRSS-FLSVP---HWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEECCTTCGGGH-HHHHHHH-----TTCSEEEEEEETTBHHH-HHTHH---HHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEECCCcHhHH-HHHHHHH-----hhCCEEEEEEECCCHHH-HHHHH---HHHHHHHHhcCCCCCEEEEEECCccc
Confidence 456788999876544 3333333 27888888766553221 11111 22222222111223446889999986
Q ss_pred ccc---hhhhhHhHHHhCC-CEEEEe--cCCCccc
Q 007789 546 DDK---VGAALSMVYVSGA-PVMFVG--CGQSYTD 574 (589)
Q Consensus 546 d~k---~G~als~~~~~g~-PI~fig--~Gq~v~D 574 (589)
+.+ .-.+..+....+. |+..+. +|+++.+
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence 322 1234455556677 655554 4555543
No 290
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.39 E-value=0.00019 Score=68.53 Aligned_cols=149 Identities=14% Similarity=0.192 Sum_probs=74.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
...|+|+|+.||||||+++.|++-..+.. + ....++.+...... ..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~----------~-----------~~t~~~~~~~~~~~-------------~~ 71 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG----------Q-----------GATIGVDFMIKTVE-------------IN 71 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT----------C-----------CCCCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC----------C-----------CCccceeEEEEEEE-------------EC
Confidence 35799999999999999999986321100 0 00001111000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|..+.+ .+..... .+.+.+++|-+++.... ......+...+..+.. ....-.++.||+
T Consensus 72 ~~~~~l~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~D~~~~~s-~~~~~~~~~~i~~~~~---~~~piilv~NK~ 141 (201)
T 2ew1_A 72 GEKVKLQIWDTAGQERFR-SITQSYY-----RSANALILTYDITCEES-FRCLPEWLREIEQYAS---NKVITVLVGNKI 141 (201)
T ss_dssp TEEEEEEEEEECCSGGGH-HHHGGGS-----TTCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSC---TTCEEEEEEECG
T ss_pred CEEEEEEEEECCCcHHHH-HHHHHHH-----hcCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC---CCCCEEEEEECC
Confidence 012346688999865533 2222222 37788888766654221 1111222222332221 123346889999
Q ss_pred cccccch---hhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDKV---GAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k~---G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|....+. -.+..+....+.|+..+. +|+++.+|
T Consensus 142 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL 179 (201)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9863221 123334455677766665 46665543
No 291
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.39 E-value=0.00021 Score=64.95 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+.-|+|+|+.|||||||++.|++
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 35799999999999999999975
No 292
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=0.00025 Score=67.34 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+..|+|+|..||||||+++.|++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 34799999999999999999986
No 293
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.37 E-value=0.00054 Score=63.45 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=73.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|+.|||||||++.|.+-..... +. ...++.+...... ..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~-----------~t~~~~~~~~~~~-------------~~ 60 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPE----------LA-----------ATIGVDFKVKTIS-------------VD 60 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT----------CC-----------CCCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCcc----------CC-----------CccceEEEEEEEE-------------EC
Confidence 35799999999999999999976321100 00 0001110000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCC-CCCccEEEEcc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTK 541 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~-~~~it~IIlTK 541 (589)
...+...++||+|....+. +..... .+.+.+++|-+++... . .......+..+..... ....-.+++||
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~---s-~~~~~~~~~~i~~~~~~~~~p~ilv~nK 130 (195)
T 1x3s_A 61 GNKAKLAIWDTAGQERFRT-LTPSYY-----RGAQGVILVYDVTRRD---T-FVKLDNWLNELETYCTRNDIVNMLVGNK 130 (195)
T ss_dssp TEEEEEEEEEECSSGGGCC-SHHHHH-----TTCCEEEEEEETTCHH---H-HHTHHHHHHHHTTCCSCSCCEEEEEEEC
T ss_pred CeEEEEEEEeCCCchhhhh-hhHHHh-----ccCCEEEEEEECcCHH---H-HHHHHHHHHHHHHhcCcCCCcEEEEEEC
Confidence 1124567889998665432 233333 2788888876664431 1 1111223334433221 12344689999
Q ss_pred ccccccch--hhhhHhHHHhCCCEEEEe--cCCCcc
Q 007789 542 FDTIDDKV--GAALSMVYVSGAPVMFVG--CGQSYT 573 (589)
Q Consensus 542 lD~~d~k~--G~als~~~~~g~PI~fig--~Gq~v~ 573 (589)
+|.....+ -.+..+....+.|+..+. +|+.+.
T Consensus 131 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 131 IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166 (195)
T ss_dssp TTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 99853222 234444555566654444 344443
No 294
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.37 E-value=0.0002 Score=64.77 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=61.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|+.||||||+++.|.+-... .+.. + .+..... +.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-----------~~~~-------t----~~~~~~~-----------------~~ 47 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-----------TTIP-------T----IGFNVET-----------------VT 47 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-----------CCCC-------C----SSEEEEE-----------------EE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-----------CcCC-------c----CccceEE-----------------EE
Confidence 457999999999999999999652100 0000 0 0110000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC-CCCCccEEEEcc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTK 541 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~-~~~~it~IIlTK 541 (589)
..+....++||+|..+.+. +..... .+.+.+++|-+++...........+ ..+.... .....-.+++||
T Consensus 48 ~~~~~~~~~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~----~~~~~~~~~~~~piilv~nK 117 (171)
T 1upt_A 48 YKNLKFQVWDLGGLTSIRP-YWRCYY-----SNTDAVIYVVDSCDRDRIGISKSEL----VAMLEEEELRKAILVVFANK 117 (171)
T ss_dssp ETTEEEEEEEECCCGGGGG-GGGGGC-----TTCSEEEEEEETTCCTTHHHHHHHH----HHHHTCGGGTTCEEEEEEEC
T ss_pred ECCEEEEEEECCCChhhhH-HHHHHh-----ccCCEEEEEEECCCHHHHHHHHHHH----HHHHhchhhCCCEEEEEEEC
Confidence 1134567889998765332 111111 2788888887776654333332222 2222211 012345789999
Q ss_pred ccccc
Q 007789 542 FDTID 546 (589)
Q Consensus 542 lD~~d 546 (589)
+|...
T Consensus 118 ~Dl~~ 122 (171)
T 1upt_A 118 QDMEQ 122 (171)
T ss_dssp TTSTT
T ss_pred CCCcC
Confidence 99864
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.36 E-value=8.6e-05 Score=72.06 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.6
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHh
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
.|+ +++|+||+||||||+++.|++.+.
T Consensus 18 ~g~--~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRK--TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCC--EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCC--EEEEECcCCCCHHHHHHHHHhhCC
Confidence 667 999999999999999999998765
No 296
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.36 E-value=0.00035 Score=75.13 Aligned_cols=118 Identities=27% Similarity=0.383 Sum_probs=57.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 464 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~ 464 (589)
.|+|||.+|||||||++.|++- ++.+. .++ +|. ... . .+.. +...
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~------~~~~v-~~~--~g~-------T~d--~-~~~~----------------~~~~ 49 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE------RISIV-EDT--PGV-------TRD--R-IYSS----------------AEWL 49 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE------ECC-----------------------C-EEEE----------------CTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC------Cceee-cCC--CCC-------ccc--e-EEEE----------------EEEC
Confidence 7999999999999999999752 11110 000 000 000 0 0000 1123
Q ss_pred CCCccccccCccccccHHHHHHHHhh--hhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKL--IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl--~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
+....++||+|-......+...+... ....+.|.+|||-+++.|+...+. .+.+. +.... ..-.++++|+
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~--~~~~~---l~~~~---~pvilv~NK~ 121 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADE--EVAKI---LYRTK---KPVVLAVNKL 121 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHH---HTTCC---SCEEEEEECC
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH--HHHHH---HHHcC---CCEEEEEECc
Confidence 45678899998652211111111110 111378999999889999887642 22222 22222 3456899999
Q ss_pred ccc
Q 007789 543 DTI 545 (589)
Q Consensus 543 D~~ 545 (589)
|..
T Consensus 122 D~~ 124 (436)
T 2hjg_A 122 DNT 124 (436)
T ss_dssp CC-
T ss_pred cCc
Confidence 986
No 297
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.35 E-value=0.0014 Score=67.47 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=40.5
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
+.-|+.+..-+.+|+ ++.|.|++|+||||++..+|......+..|++.....
T Consensus 55 ~~~LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 55 FTELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp CHHHHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred hHHHHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 344555554567899 9999999999999999999976655567888877653
No 298
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.34 E-value=0.00026 Score=65.21 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=73.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
...|+|+|+.||||||+++.|.+-..+.. +. ...+..+...... ..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------~~-----------~~~~~~~~~~~~~-------------~~ 55 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDD----------SN-----------HTIGVEFGSKIIN-------------VG 55 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT----------CC-----------CCSEEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC----------CC-----------CccceEEEEEEEE-------------EC
Confidence 35799999999999999999975321110 00 0001110000000 00
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
-..+...++||+|....+ .+..... .+.+.+++|-+++..... .....+...+..+.. ....-.+++||+
T Consensus 56 ~~~~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~---~~~piilv~nK~ 125 (186)
T 2bme_A 56 GKYVKLQIWDTAGQERFR-SVTRSYY-----RGAAGALLVYDITSRETY-NALTNWLTDARMLAS---QNIVIILCGNKK 125 (186)
T ss_dssp TEEEEEEEEEECCSGGGH-HHHHTTS-----TTCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC---TTCEEEEEEECG
T ss_pred CEEEEEEEEeCCCcHHHH-HHHHHHH-----hcCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC---CCCcEEEEEECc
Confidence 011346788999865543 2332222 377888887666542211 111122122222222 223457899999
Q ss_pred cccccch---hhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDKV---GAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k~---G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|....+. -.+..+....+.|+..+. +|+++.++
T Consensus 126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 9853221 123334445566665554 45555443
No 299
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.34 E-value=0.00043 Score=62.37 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
+-|+|+|+.||||||+++.+++
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3689999999999999999865
No 300
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.34 E-value=0.00029 Score=67.08 Aligned_cols=158 Identities=17% Similarity=0.112 Sum_probs=78.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
.-|+|+|+.|||||||++.|++-.... ....-.+.+... . .+.+. ... +.. .....
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~-----------~--~~~~~--~~~--~~~------~~~~~ 81 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFRE-----------K--RVVYN--AQG--PNG------SSGKA 81 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEE-----------E--EEEEE--C---------------CCE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEE-----------E--EEEEC--Ccc--ccc------cccCc
Confidence 479999999999999999997522111 111111111100 0 01110 000 000 00111
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCC-CCCccEEEEccc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTKF 542 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~-~~~it~IIlTKl 542 (589)
..+...++||+|....+ .+..... ...+.++||-+++.. .. .......+..+..... ....-.+++||+
T Consensus 82 ~~~~l~l~Dt~G~~~~~-~~~~~~~-----~~~d~iilV~D~~~~---~s-~~~~~~~l~~i~~~~~~~~~piilV~NK~ 151 (217)
T 2f7s_A 82 FKVHLQLWDTAGQERFR-SLTTAFF-----RDAMGFLLMFDLTSQ---QS-FLNVRNWMSQLQANAYCENPDIVLIGNKA 151 (217)
T ss_dssp EEEEEEEEEEESHHHHH-HHHHHHH-----TTCCEEEEEEETTCH---HH-HHHHHHHHHTCCCCCTTTCCEEEEEEECT
T ss_pred eeEEEEEEECCCcHhHH-hHHHHHh-----cCCCEEEEEEECcCH---HH-HHHHHHHHHHHHHhcCcCCCCEEEEEECC
Confidence 23457789999854432 2333333 277888887665432 21 1122223333332211 223457899999
Q ss_pred cccccch---hhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 543 DTIDDKV---GAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k~---G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|..+.+. -.+..+....+.|+..+. +|+.+.+|
T Consensus 152 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 189 (217)
T 2f7s_A 152 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 189 (217)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHH
T ss_pred ccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHH
Confidence 9864221 234445555688877776 45555544
No 301
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.33 E-value=0.00029 Score=65.73 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
...|+|+|+.|||||||++.|++
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999999986
No 302
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.33 E-value=0.00022 Score=67.44 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+.-|+|+|+.|||||||++.|.+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999974
No 303
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.32 E-value=0.0003 Score=70.44 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=65.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+++|..|||||||++.|++--.. ..+ + +. +.. .....+.+ .
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~------~~~-~-~~-~~t------~~~~~~~~--------------------~ 83 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVV------SIS-P-FQ-SEG------PRPVMVSR--------------------S 83 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCS------CCC-S-SS-CCC------SSCEEEEE--------------------E
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcc------ccc-C-CC-Ccc------eeeEEEEE--------------------e
Confidence 458999999999999999999862110 000 0 00 000 00000000 1
Q ss_pred ccCCCccccccCcccccc---HHHHHHHHhhhhhcCCCEEEEEecCCC-CCCHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 007789 463 RNGSDVVLVDTAGRMQDN---EPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 538 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr---~~LaraL~kl~~~~~PdlILLVDEPt~-GlD~~~q~~~f~~~l~~l~~~~~~~~it~II 538 (589)
..+....++||+|-.... ....+.+...+....++.+|+|..+.. .++..+. .+.+.+....... ......++
T Consensus 84 ~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~--~~~~~l~~~~~~~-~~~~iivV 160 (270)
T 1h65_A 84 RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDK--LVAKAITDSFGKG-IWNKAIVA 160 (270)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHH--HHHHHHHHHHCGG-GGGGEEEE
T ss_pred eCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHH--HHHHHHHHHhCcc-cccCEEEE
Confidence 123457889999865432 334444443333346888988855543 4554332 2223333322110 00235789
Q ss_pred Ecccccc
Q 007789 539 LTKFDTI 545 (589)
Q Consensus 539 lTKlD~~ 545 (589)
+||+|..
T Consensus 161 ~nK~Dl~ 167 (270)
T 1h65_A 161 LTHAQFS 167 (270)
T ss_dssp EECCSCC
T ss_pred EECcccC
Confidence 9999986
No 304
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.30 E-value=0.00047 Score=73.30 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=40.6
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC-CHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN-DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl-D~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
....++||+|-..-.....+.+. ..|.++||-+++.+. .+.. ......+..+.. ..-.+++||+|.
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~------~~D~~ilVvda~~~~~~~qt--~~~~~~~~~~~~-----~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAA------LMDGAILVVAANEPFPQPQT--REHFVALGIIGV-----KNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHT------TCSEEEEEEETTSCSSCHHH--HHHHHHHHHHTC-----CCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHHHHHh------hCCEEEEEEECCCCCCcHHH--HHHHHHHHHcCC-----CCEEEEEECccc
Confidence 45678999996554433333333 889999988888875 4322 222123322211 123589999998
Q ss_pred cc
Q 007789 545 ID 546 (589)
Q Consensus 545 ~d 546 (589)
.+
T Consensus 142 ~~ 143 (403)
T 3sjy_A 142 VS 143 (403)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 305
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.30 E-value=0.00051 Score=65.76 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+..|+|+|+.||||||+++.|++
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45799999999999999999975
No 306
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.29 E-value=0.00038 Score=71.89 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=38.3
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHhH-hhC-----CcEEEEccc-ccCccchhhhhHhhhhccc
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQH-----KVSVMMAAC-DTFRSGAVEQLRTHARRLQ 438 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgll-~~~-----~GkV~l~~~-Dt~RigaveQL~~~~~~l~ 438 (589)
-++.|+ ++.|+|++|+||||++..|+... .+. +++|++... ..|+. +++..+++.++
T Consensus 103 Gl~~G~--i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~---~~l~~~~~~~g 166 (324)
T 2z43_A 103 GIETRT--MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRW---ERIENMAKALG 166 (324)
T ss_dssp SEETTS--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH---HHHHHHHHHTT
T ss_pred CCCCCc--EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCH---HHHHHHHHHhC
Confidence 356788 99999999999999999999754 332 556665543 33442 34444444443
No 307
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.29 E-value=0.00032 Score=70.75 Aligned_cols=139 Identities=19% Similarity=0.132 Sum_probs=75.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
..|+|+|..|||||||++.|+|.. ..+. .. .|. .+...... +..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~----~~v~--~~----~g~-----------t~~~~~~~---------------~~~ 47 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR----QRVG--NW----AGV-----------TVERKEGQ---------------FST 47 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC----EEEE--EC----TTS-----------SSEEEEEE---------------EEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----cccC--CC----CCe-----------eEEEEEEE---------------EEe
Confidence 579999999999999999997642 1111 00 000 00000000 011
Q ss_pred cCCCccccccCcccccc---------HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007789 464 NGSDVVLVDTAGRMQDN---------EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 534 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr---------~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~i 534 (589)
.+..+.++||+|-..-. ..+.+... ...+++.+++|-+++. .. .. ...+..+.+.. ..
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~---~~~~~d~ii~VvD~~~---~~-~~---~~~~~~l~~~~---~p 114 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI---LSGDADLLINVVDASN---LE-RN---LYLTLQLLELG---IP 114 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHH---HHTCCSEEEEEEEGGG---HH-HH---HHHHHHHHHHT---CC
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHH---hhcCCCEEEEEecCCC---hH-HH---HHHHHHHHhcC---CC
Confidence 23456678998854422 12233221 2248999999877765 11 11 12222233222 34
Q ss_pred cEEEEccccccccchh---hhhHhHHHhCCCEEEEe--cCCCc
Q 007789 535 DGILLTKFDTIDDKVG---AALSMVYVSGAPVMFVG--CGQSY 572 (589)
Q Consensus 535 t~IIlTKlD~~d~k~G---~als~~~~~g~PI~fig--~Gq~v 572 (589)
-.+++||+|... .-+ .+-.+....+.|+..+. +|+++
T Consensus 115 ~ivv~NK~Dl~~-~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 115 CIVALNMLDIAE-KQNIRIEIDALSARLGCPVIPLVSTRGRGI 156 (274)
T ss_dssp EEEEEECHHHHH-HTTEEECHHHHHHHHTSCEEECCCGGGHHH
T ss_pred EEEEEECccchh-hhhHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 568999999863 322 23345566788988876 35444
No 308
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.29 E-value=0.00031 Score=64.36 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
..-|+|+|+.||||||+++.+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 309
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.29 E-value=0.00029 Score=64.69 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
.-|+|+|+.||||||+++.+++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999875
No 310
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.29 E-value=0.00016 Score=68.91 Aligned_cols=100 Identities=7% Similarity=0.043 Sum_probs=51.1
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|....+ .+..... ...+.+++|-+++.+....+. ..+...+....... ..-.+++||+|..
T Consensus 61 ~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~---~piilv~nK~Dl~ 130 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-VLKDVYY-----IGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNE---APIVVCANKIDIK 130 (218)
T ss_dssp EEEEEEEECSGGGTS-CCCHHHH-----TTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCSS---SCEEEEEECTTCC
T ss_pred EEEEEEecCCchhhc-hHHHHHh-----hcCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCC---CCEEEEEECCCCc
Confidence 346788999866544 2222333 278888888776654322221 12223333333221 3346899999986
Q ss_pred ccc-h--hhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 546 DDK-V--GAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 546 d~k-~--G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
..+ + -.+.......+.|+..+. +|+++.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp ----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred cccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 321 1 112233334566766665 36665544
No 311
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.28 E-value=0.00029 Score=73.53 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=37.8
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHhH-hh-----CCcEEEEcc-cccCccchhhhhHhhhhccc
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQ-----HKVSVMMAA-CDTFRSGAVEQLRTHARRLQ 438 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgll-~~-----~~GkV~l~~-~Dt~RigaveQL~~~~~~l~ 438 (589)
-++.|+ ++.|+|++|+||||++..|+... .+ .++.|.+.. ...|+ .+++..++..++
T Consensus 118 Gl~~G~--i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~---~~~l~~~~~~~g 181 (343)
T 1v5w_A 118 GIESMA--ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR---PDRLRDIADRFN 181 (343)
T ss_dssp SBCSSE--EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCC---HHHHHHHHHHTT
T ss_pred CCCCCe--EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC---HHHHHHHHHHcC
Confidence 356788 99999999999999999999753 32 355665554 33344 234444444443
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.28 E-value=0.00044 Score=65.68 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
+.+|+|+|++||||||+++.|+..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4489999999999999999999876
No 313
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.28 E-value=0.00025 Score=65.61 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=62.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
...|+|+|..||||||+++.|++--. .... .+ +| ..... +.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~----~~~~---~t--~~-------------~~~~~-----------------~~ 61 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV----VHTS---PT--IG-------------SNVEE-----------------IV 61 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC----EEEE---CC--SS-------------SSCEE-----------------EE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC----CccC---Cc--Cc-------------eeeEE-----------------EE
Confidence 45899999999999999999986210 0000 00 11 00000 01
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC-CCCCccEEEEcc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTK 541 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~-~~~~it~IIlTK 541 (589)
..+....++||+|..+.+.. ..... .+.+.+++|-+++...........+ ..+.... .....-.+++||
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~-~~~~~-----~~~d~ii~v~D~~~~~s~~~~~~~~----~~~~~~~~~~~~piilv~NK 131 (181)
T 2h17_A 62 INNTRFLMWDIGGQESLRSS-WNTYY-----TNTEFVIVVVDSTDRERISVTREEL----YKMLAHEDLRKAGLLIFANK 131 (181)
T ss_dssp ETTEEEEEEEESSSGGGTCG-GGGGG-----TTCCEEEEEEETTCTTTHHHHHHHH----HHHHTCGGGTTCEEEEEEEC
T ss_pred ECCEEEEEEECCCCHhHHHH-HHHHh-----ccCCEEEEEEECCCHHHHHHHHHHH----HHHHhChhhCCCeEEEEEEC
Confidence 12345678899987654321 11122 3778888887777654333322222 2222210 111345689999
Q ss_pred ccccc
Q 007789 542 FDTID 546 (589)
Q Consensus 542 lD~~d 546 (589)
+|...
T Consensus 132 ~Dl~~ 136 (181)
T 2h17_A 132 QDVKE 136 (181)
T ss_dssp TTSTT
T ss_pred CCccc
Confidence 99863
No 314
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.28 E-value=0.00036 Score=69.55 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=64.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|+|..|||||||++.|.+--.. . .+.+... ........ ..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~------~--~~~~~~~----------t~~~~~~~-----------------~~ 80 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVV------R--VSPFQAE----------GLRPVMVS-----------------RT 80 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCS------C--CCSSCC-----------CCCCEEEE-----------------EE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCc------c--cCCCCCc----------ceeeEEEE-----------------EE
Confidence 458999999999999999999862100 0 0000000 00000000 01
Q ss_pred ccCCCccccccCcccc---ccHHHHHHHHhhhhhcCCCEEEEEecCCC-CCCHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 007789 463 RNGSDVVLVDTAGRMQ---DNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 538 (589)
Q Consensus 463 l~~~d~vliDTSGg~q---qr~~LaraL~kl~~~~~PdlILLVDEPt~-GlD~~~q~~~f~~~l~~l~~~~~~~~it~II 538 (589)
..+....++||+|-.. ......+.+..++....++.+|+|..... ..+..+. ..+ +.+....... ......++
T Consensus 81 ~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~-~~~-~~l~~~~~~~-~~~~~ivv 157 (262)
T 3def_A 81 MGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDK-QVV-IAITQTFGKE-IWCKTLLV 157 (262)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHH-HHH-HHHHHHHCGG-GGGGEEEE
T ss_pred ECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHH-HHH-HHHHHHhchh-hhcCEEEE
Confidence 1234567899998543 22344455554444457889999854432 2443321 122 3333332110 11245689
Q ss_pred Ecccccc
Q 007789 539 LTKFDTI 545 (589)
Q Consensus 539 lTKlD~~ 545 (589)
+||+|..
T Consensus 158 ~nK~Dl~ 164 (262)
T 3def_A 158 LTHAQFS 164 (262)
T ss_dssp EECTTCC
T ss_pred EeCcccC
Confidence 9999975
No 315
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.27 E-value=0.0013 Score=61.13 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
++.|+|+|..|||||||++.|++
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 316
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.26 E-value=0.00018 Score=70.89 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=31.8
Q ss_pred ccccccccc---cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc
Q 007789 371 LRDVHAAKE---QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 417 (589)
Q Consensus 371 L~~Is~~i~---~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~ 417 (589)
|.++++.+. .|. +|+|.|++||||||++++|+..+.+ ++.|...
T Consensus 13 ~~~~~~~~~~~~~g~--~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSA--FITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCE--EEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCe--EEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 345555543 566 9999999999999999999999988 7777654
No 317
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.26 E-value=0.00049 Score=68.35 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=30.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCcc
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 424 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Ri 424 (589)
.|.+|+|+|++||||||+.+.|+..+. .+.+. ...|.+|.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~-~~~D~~r~ 70 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVI-IDGDSFRS 70 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEE-ECGGGGGT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEE-EecHHHHH
Confidence 355999999999999999999998764 23344 44566663
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.26 E-value=0.0013 Score=68.88 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=40.8
Q ss_pred cccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 368 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 368 i~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
+.-|+.+..-+.+|+ ++.|.|++|+||||++..||......++.|++....
T Consensus 33 ~~~LD~~~gGl~~G~--LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGS--LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp CHHHHHHHCSBCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ChHHHHHhcCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 344555554567899 999999999999999999998776678888887654
No 319
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.25 E-value=0.00021 Score=78.06 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=67.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 464 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~ 464 (589)
.|+|+|.+|||||||++.|++.- ..+... . .+. .. .+. ...+...
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~------~a~vs~-~--~gt-------T~----d~~---------------~~~i~~~ 279 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQE------RAIVSH-M--PGT-------TR----DYI---------------EECFIHD 279 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC-----------------------------------------------------CEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCC------CcccCC-C--CCc-------eE----EEE---------------EEEEEEC
Confidence 69999999999999999997631 111000 0 000 00 000 0011223
Q ss_pred CCCccccccCccccccHHHHHHH--H-hhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRAL--S-KLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 541 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL--~-kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTK 541 (589)
+..+.++||+|-..... +...+ . ......+.|.+|+|-+++.+..... .......+..+. .....+++||
T Consensus 280 g~~l~liDT~G~~~~~~-~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~~~~~~l~~l~-----~~piIvV~NK 352 (476)
T 3gee_A 280 KTMFRLTDTAGLREAGE-EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKAAHP-----AAKFLTVANK 352 (476)
T ss_dssp TEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGG-HHHHHHHHHHCT-----TSEEEEEEEC
T ss_pred CeEEEEEECCCCCcchh-HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhh-hHHHHHHHHhcC-----CCCEEEEEEC
Confidence 45678899998654221 11111 0 0112247899999988887765421 111123333332 1345789999
Q ss_pred ccccccchhhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 542 FDTIDDKVGAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 542 lD~~d~k~G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
+|......-..-.+......|+..+. +|+++.+|
T Consensus 353 ~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 353 LDRAANADALIRAIADGTGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp TTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred cCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHH
Confidence 99864332111011111125666665 46665443
No 320
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.25 E-value=0.0006 Score=67.35 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+..|+|+|.+|||||||++.|++
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 321
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.24 E-value=0.00043 Score=64.01 Aligned_cols=22 Identities=41% Similarity=0.443 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
..|+|+|+.||||||+++.|.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999975
No 322
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.23 E-value=0.0003 Score=66.03 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
.-|+|+|..||||||+++.|++
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999965
No 323
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.23 E-value=0.0025 Score=65.82 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=27.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhC-CcEEEEcc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAA 418 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~-~GkV~l~~ 418 (589)
.++|+||+|+||||+++.+++.+.+. +..+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 89999999999999999999988776 34444433
No 324
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.23 E-value=0.00033 Score=66.53 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgl 406 (589)
...|+|+|+.|||||||++.|++-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 325
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.22 E-value=0.00014 Score=67.09 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=23.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhh
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQ 409 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~ 409 (589)
+|+|+|++||||||+++.|++.+.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 8999999999999999999998753
No 326
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.22 E-value=0.00068 Score=72.86 Aligned_cols=147 Identities=20% Similarity=0.279 Sum_probs=78.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+|||.+|||||||++.|++--.. ..... .| +-.......+ .
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~-----~~~~~----~g------tT~d~~~~~~--------------------~ 219 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERV-----IVSNV----AG------TTRDAVDTSF--------------------T 219 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTE-----EEC-------------------CCEEE--------------------E
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCce-----eecCC----CC------ceeeeeEEEE--------------------E
Confidence 468999999999999999999863210 00000 00 0000000011 1
Q ss_pred ccCCCccccccCcccc--------ccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007789 463 RNGSDVVLVDTAGRMQ--------DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 534 (589)
Q Consensus 463 l~~~d~vliDTSGg~q--------qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~i 534 (589)
..+....++||+|-.+ .+...++.+.. ....+.+++|-+++.+....+. . .+..+.... ..
T Consensus 220 ~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~---~~~ad~~llv~D~~~~~s~~~~-~----~~~~~~~~~---~~ 288 (436)
T 2hjg_A 220 YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA---IDRSEVVAVVLDGEEGIIEQDK-R----IAGYAHEAG---KA 288 (436)
T ss_dssp ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHH---HHHCSEEEEEEETTTCCCHHHH-H----HHHHHHHTT---CE
T ss_pred ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHH---HHhCCEEEEEEcCCcCCcHHHH-H----HHHHHHHcC---Cc
Confidence 1223466889988421 22333333321 1267888888888888765442 2 222222222 34
Q ss_pred cEEEEccccccccchhh---hh-----HhHHHhCCCEEEEe--cCCCcccc
Q 007789 535 DGILLTKFDTIDDKVGA---AL-----SMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 535 t~IIlTKlD~~d~k~G~---al-----s~~~~~g~PI~fig--~Gq~v~DL 575 (589)
-.++++|+|....+.-. +. .+....+.|+.++. +|+++.+|
T Consensus 289 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l 339 (436)
T 2hjg_A 289 VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTL 339 (436)
T ss_dssp EEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGH
T ss_pred EEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHH
Confidence 56899999987432211 11 11122367988886 68887765
No 327
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.22 E-value=0.00035 Score=76.49 Aligned_cols=141 Identities=23% Similarity=0.223 Sum_probs=76.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
..|+|+|.+|||||||++.|++--.+.-..+.-.+.|+. .. .+..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~----------------~~-------------------~i~~ 288 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVI----------------SE-------------------EIVI 288 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSC----------------CE-------------------EEEE
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeE----------------EE-------------------EEec
Confidence 479999999999999999998742110000000001100 00 0112
Q ss_pred cCCCccccccCccc-ccc-------HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 007789 464 NGSDVVLVDTAGRM-QDN-------EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 535 (589)
Q Consensus 464 ~~~d~vliDTSGg~-qqr-------~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it 535 (589)
.+..+.++||+|-. ... ...+.... ...|++|+|-+++.+.+..+. +.+..+ . . ...
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~-----~~aD~vl~VvD~s~~~s~~~~-----~il~~l-~-~---~pi 353 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDLVERLGIERTLQEI-----EKADIVLFVLDASSPLDEEDR-----KILERI-K-N---KRY 353 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH-----HHCSEEEEEEETTSCCCHHHH-----HHHHHH-T-T---SSE
T ss_pred CCeEEEEEECCCccccchhhHHHHHHHHHHHHh-----hcccEEEEEecCCCCCCHHHH-----HHHHHh-c-C---CCE
Confidence 23456789999855 221 12222222 278899988888777765432 222222 1 1 335
Q ss_pred EEEEccccccccchhhhhHhHHHhC--CCEEEEe--cCCCccccc
Q 007789 536 GILLTKFDTIDDKVGAALSMVYVSG--APVMFVG--CGQSYTDLK 576 (589)
Q Consensus 536 ~IIlTKlD~~d~k~G~als~~~~~g--~PI~fig--~Gq~v~DL~ 576 (589)
.+++||+|... ..- .-.+....+ .|+.++. +|+++++|.
T Consensus 354 ivV~NK~DL~~-~~~-~~~~~~~~~~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 354 LVVINKVDVVE-KIN-EEEIKNKLGTDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp EEEEEECSSCC-CCC-HHHHHHHHTCSTTEEEEEGGGTCCHHHHH
T ss_pred EEEEECccccc-ccC-HHHHHHHhcCCCcEEEEECCCCCCHHHHH
Confidence 79999999863 211 111111123 5777776 577776543
No 328
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.20 E-value=0.00063 Score=63.94 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=59.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHH
Q 007789 381 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 460 (589)
Q Consensus 381 Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~ 460 (589)
.+...|+|+|+.||||||+++.+++ ++.. ... ++. +.....
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~------~~~~--~~~----------~t~----~~~~~~----------------- 67 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL------GEIV--TTI----------PTI----GFNVET----------------- 67 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS------SCCE--EEE----------EET----TEEEEE-----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh------CCcc--ccC----------CcC----ceeEEE-----------------
Confidence 3456899999999999999999853 1110 000 000 000000
Q ss_pred hcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC-CCCCccEEEE
Q 007789 461 ATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILL 539 (589)
Q Consensus 461 a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~-~~~~it~IIl 539 (589)
+...+....++||+|....+......+. +.+.+++|-+++......... ..+..+.... .....-.+++
T Consensus 68 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------~~d~iilv~D~~~~~s~~~~~----~~l~~~~~~~~~~~~piilv~ 137 (192)
T 2b6h_A 68 VEYKNICFTVWDVGGQDKIRPLWRHYFQ------NTQGLIFVVDSNDRERVQESA----DELQKMLQEDELRDAVLLVFA 137 (192)
T ss_dssp EEETTEEEEEEECC-----CTTHHHHHH------TCCEEEEEEETTCGGGHHHHH----HHHHHHHTCGGGTTCEEEEEE
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhc------cCCEEEEEEECCCHHHHHHHH----HHHHHHhcccccCCCeEEEEE
Confidence 0112345678899987654432222232 788888887766543222222 2233332211 1123457899
Q ss_pred ccccccc
Q 007789 540 TKFDTID 546 (589)
Q Consensus 540 TKlD~~d 546 (589)
||+|...
T Consensus 138 NK~Dl~~ 144 (192)
T 2b6h_A 138 NKQDMPN 144 (192)
T ss_dssp ECTTSTT
T ss_pred ECCCCCC
Confidence 9999863
No 329
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.20 E-value=0.00075 Score=72.58 Aligned_cols=117 Identities=25% Similarity=0.305 Sum_probs=60.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 464 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~ 464 (589)
.|+|||.++||||||++.|++-- ..+.. |+ +|. .+...... +...
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~------~~~v~-~~--~g~-------T~d~~~~~-------------------~~~~ 47 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK------KAIVE-DE--EGV-------TRDPVQDT-------------------VEWY 47 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC------------------------------CCSEEE-------------------EEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCC------Cceec-CC--CCC-------ccceeeEE-------------------EEEC
Confidence 68999999999999999998521 11110 10 000 00000000 0112
Q ss_pred CCCccccccCcccccc----HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEc
Q 007789 465 GSDVVLVDTAGRMQDN----EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 540 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr----~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlT 540 (589)
+....++||+|-.... ...++.+.. ....+.|.+|||-+.+.++...+. .+.+.+... . ..-.++++
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~-~~~~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~---~---~p~ilv~N 118 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTL-NMIREADLVLFVVDGKRGITKEDE--SLADFLRKS---T---VDTILVAN 118 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHH-HHHTTCSEEEEEEETTTCCCHHHH--HHHHHHHHH---T---CCEEEEEE
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHH-HHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc---C---CCEEEEEe
Confidence 2345689998854311 011221111 111388999999888888876542 222333221 1 23468999
Q ss_pred ccccc
Q 007789 541 KFDTI 545 (589)
Q Consensus 541 KlD~~ 545 (589)
|+|..
T Consensus 119 K~D~~ 123 (439)
T 1mky_A 119 KAENL 123 (439)
T ss_dssp SCCSH
T ss_pred CCCCc
Confidence 99985
No 330
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.20 E-value=0.0018 Score=64.92 Aligned_cols=23 Identities=26% Similarity=0.253 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgl 406 (589)
..|+|+|..||||||+++.|+|.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 37999999999999999999974
No 331
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.18 E-value=0.00031 Score=66.04 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgl 406 (589)
...|+|+|+.|||||||++.|.+-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999863
No 332
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=97.18 E-value=0.0034 Score=60.12 Aligned_cols=33 Identities=12% Similarity=-0.018 Sum_probs=29.4
Q ss_pred EEEEEec-CCCcHHHHHHHHHHhHhhCCcEEEEc
Q 007789 385 VVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMA 417 (589)
Q Consensus 385 iI~LVGp-NGvGKTTlLakLAgll~~~~GkV~l~ 417 (589)
+|+|+|. .|+||||+...||..+...+.+|++.
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 7888987 58999999999999998888899884
No 333
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.17 E-value=0.0015 Score=63.02 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+..|+|+|+.|||||||++.|++
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999875
No 334
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.17 E-value=0.00022 Score=76.19 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=33.5
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHH------------hHhhCCcEEEEcc
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAY------------WLLQHKVSVMMAA 418 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAg------------ll~~~~GkV~l~~ 418 (589)
.+..|. .++|||+||||||||++.|+| .+.|+.|.|.+.+
T Consensus 16 ~v~~g~--~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNL--KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCC--EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCC--EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 345677 999999999999999999999 4457888888765
No 335
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.15 E-value=0.00032 Score=66.44 Aligned_cols=38 Identities=21% Similarity=0.073 Sum_probs=32.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
+.+++|+|++||||||++.+|+..+...+.+|.+...|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 34899999999999999999999998877777765543
No 336
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.15 E-value=0.001 Score=60.54 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+.-|+|+|+.||||||+++.|.+
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999975
No 337
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.14 E-value=0.00043 Score=65.42 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
..-|+|+|..||||||+++.+++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999986
No 338
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.00084 Score=62.53 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
.-|+|+|+.||||||+++.+++
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999986
No 339
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.13 E-value=0.00024 Score=66.25 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=29.3
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCc-EEEEcc
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAA 418 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G-kV~l~~ 418 (589)
+|. +|+|+|++||||||+++.|+.++.+.+. .|.+.+
T Consensus 4 ~g~--~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGC--TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCE--EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCc--EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 455 9999999999999999999999887443 344443
No 340
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.12 E-value=0.0003 Score=65.51 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgl 406 (589)
...|+|+|..|||||||++.|++-
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999764
No 341
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.11 E-value=0.0009 Score=70.59 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=27.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHh-----------hCCcEEEEccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLL-----------QHKVSVMMAAC 419 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~-----------~~~GkV~l~~~ 419 (589)
+++|+|++|||||||++.|++... +..+.|.+.+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~ 226 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR 226 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE
Confidence 699999999999999999998654 34467776654
No 342
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.11 E-value=0.0027 Score=59.84 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
...|+|||.+|||||||++.+++
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999864
No 343
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.10 E-value=0.00036 Score=65.33 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=45.4
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|...-+ .+..... .+.+.+++|-+++.... ......+...+............-.+++||+|..
T Consensus 73 ~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 73 VELFLLDTAGSDLYK-EQISQYW-----NGVYYAILVFDVSSMES-FESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp EEEEEEETTTTHHHH-HHHSTTC-----CCCCEEEEEEETTCHHH-HHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred EEEEEEECCCcHHHH-HHHHHHH-----hhCcEEEEEEECCCHHH-HHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 356788999865422 1111111 36788888766654321 1122222222222221000123457999999986
Q ss_pred c-cc---hhhhhHhHHHhCCCEEEEe--c-CCCcccc
Q 007789 546 D-DK---VGAALSMVYVSGAPVMFVG--C-GQSYTDL 575 (589)
Q Consensus 546 d-~k---~G~als~~~~~g~PI~fig--~-Gq~v~DL 575 (589)
. .+ .-.+..+....+.|+..+. + |+++.++
T Consensus 146 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l 182 (208)
T 2yc2_C 146 PQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAP 182 (208)
T ss_dssp ----CCCHHHHHHHHHHTTCEEEECCC-------CHH
T ss_pred hhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHH
Confidence 3 11 1234455556676766554 4 6666554
No 344
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.09 E-value=0.0007 Score=67.53 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=31.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 423 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R 423 (589)
+.+|+|+|++||||||+.+.|+..+...+..+.+...|.+|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 45899999999999999999998876555555544556544
No 345
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=0.0054 Score=57.29 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
..-|+|+|+.||||||+++.|++
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999986
No 346
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.09 E-value=0.0019 Score=64.79 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHH
Q 007789 381 RKPYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 381 Gep~iI~LVGpNGvGKTTlLakLAg 405 (589)
|....|+|+|.+|||||||++.|.+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSS
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhC
Confidence 4345799999999999999999864
No 347
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.08 E-value=0.00071 Score=62.21 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=42.4
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|....+. +..... .+.+.+++|-+++... ...... ..+..+.........-.++.||+|..
T Consensus 57 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~---~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRT-ITTAYY-----RGAMGIMLVYDITNEK-SFDNIR---NWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEEEEC----------CCTTT-----TTCSEEEEEEETTCHH-HHHHHH---HHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred EEEEEEcCCCChhhhh-hHHHHH-----hcCCEEEEEEECcCHH-HHHHHH---HHHHHHHHhcCCCCCEEEEEECccCC
Confidence 4567789988654321 111111 2678888876665422 111122 22222222111123456899999986
Q ss_pred ccc---hhhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 546 DDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 546 d~k---~G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
+.+ .-.+..+....+.|+..+. +|+++.+
T Consensus 127 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVEN 160 (183)
T ss_dssp SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 322 2234455556677765554 3555443
No 348
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.08 E-value=0.00091 Score=73.15 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=25.1
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll 407 (589)
+.++.+.++. -+.|+||+|+||||+++.|++.+
T Consensus 41 ~~~~g~~~p~----gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 41 FNRIGARMPK----GILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHTTTCCCCS----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhhcCCCCCC----eEEEECCCCCCHHHHHHHHHHHc
Confidence 4444444433 47899999999999999999854
No 349
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.08 E-value=0.0014 Score=70.64 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgl 406 (589)
..|+|+|..++|||||++.|.+.
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 47999999999999999999653
No 350
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.07 E-value=0.00042 Score=65.69 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=30.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
.+++|+|++||||||+++.|++.+.+.+.+|.....+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 3899999999999999999999988777666655443
No 351
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.07 E-value=0.00069 Score=70.67 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHh
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgl 406 (589)
.|+|||..||||||+++.|+|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
No 352
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.06 E-value=0.00013 Score=70.19 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=22.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll 407 (589)
.+|+|+|++||||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999876
No 353
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.06 E-value=0.00029 Score=64.78 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHH
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVA 404 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLA 404 (589)
++..|+|+|++||||||+++.++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999999998885
No 354
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.06 E-value=0.00052 Score=71.09 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=59.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHh
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 461 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a 461 (589)
+++.|+|+|..|||||||++.|.+ +.+. ....| .++.+.. +
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~------~~~~-~~~pT---------------~~~~~~~-----------------~ 204 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPT---------------IGFNVET-----------------V 204 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCS------SCCE-EEEEE---------------TTEEEEE-----------------E
T ss_pred CcceEEEECCCCccHHHHHHHHhC------CCCC-Ccccc---------------cceEEEE-----------------E
Confidence 345899999999999999998853 1110 00001 1111110 0
Q ss_pred cccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCC-CCCCccEEEEc
Q 007789 462 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLT 540 (589)
Q Consensus 462 ~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~-~~~~it~IIlT 540 (589)
...+....++||+|....+.. ..... ...+.+|+|-+++...........+ ..+.... .....-.+++|
T Consensus 205 ~~~~~~l~i~Dt~G~~~~~~~-~~~~~-----~~ad~vilV~D~~~~~s~~~~~~~~----~~~~~~~~~~~~piilV~N 274 (329)
T 3o47_A 205 EYKNISFTVWDVGGQDKIRPL-WRHYF-----QNTQGLIFVVDSNDRERVNEAREEL----MRMLAEDELRDAVLLVFAN 274 (329)
T ss_dssp EETTEEEEEEECC-----CCS-HHHHH-----TTEEEEEEEEETTCSSSHHHHHHHH----HHHHTCGGGTTCEEEEEEE
T ss_pred ecCcEEEEEEECCCCHhHHHH-HHHHh-----ccCCEEEEEEECCchHHHHHHHHHH----HHHHhhhccCCCeEEEEEE
Confidence 112345678999996554422 22233 2788888887765433332222222 2222211 11234568899
Q ss_pred ccccccc
Q 007789 541 KFDTIDD 547 (589)
Q Consensus 541 KlD~~d~ 547 (589)
|+|..+.
T Consensus 275 K~Dl~~~ 281 (329)
T 3o47_A 275 KQDLPNA 281 (329)
T ss_dssp CTTSTTC
T ss_pred CccCCcc
Confidence 9998643
No 355
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.06 E-value=0.00059 Score=71.48 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=75.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 464 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~ 464 (589)
.|+|||.+|||||||++.|++- +..+.... |. ++...+++ +. ..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~------~~~i~~~~-ft--------Tl~p~~g~--v~-------------------~~ 203 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA------KPKIADYH-FT--------TLVPNLGM--VE-------------------TD 203 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE------CCEESSTT-SS--------CCCCCEEE--EE-------------------CS
T ss_pred eeeeeCCCCCCHHHHHHHHHcC------CCccccCC-cc--------ccCceEEE--EE-------------------eC
Confidence 5899999999999999988642 11121110 10 11111111 10 11
Q ss_pred -CCCccccccCccc---cccHHHHHHHHhhhhhcCCCEEEEEecCCCC--CCHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 007789 465 -GSDVVLVDTAGRM---QDNEPLMRALSKLIYLNNPDLVLFVGEALVG--NDAVDQLSKFNQKLADLSSSPNPQLIDGIL 538 (589)
Q Consensus 465 -~~d~vliDTSGg~---qqr~~LaraL~kl~~~~~PdlILLVDEPt~G--lD~~~q~~~f~~~l~~l~~~~~~~~it~II 538 (589)
.....++||+|-. .+...|...+.+ .....+.+|+|-+.+.. .++......+...|..+...... ..-.++
T Consensus 204 ~~~~~~l~DtPG~i~~a~~~~~l~~~fl~--~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~-~p~ilV 280 (342)
T 1lnz_A 204 DGRSFVMADLPGLIEGAHQGVGLGHQFLR--HIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTE-RPQIIV 280 (342)
T ss_dssp SSCEEEEEEHHHHHHHTTCTTTTHHHHHH--HHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTT-SCBCBE
T ss_pred CCceEEEecCCCCcccccccchhHHHHHH--HHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcC-CCEEEE
Confidence 1356788888731 122122222221 11257777777766542 56766655555555554321111 234689
Q ss_pred EccccccccchhhhhHhHHHhC--CCEEEEe--cCCCccc
Q 007789 539 LTKFDTIDDKVGAALSMVYVSG--APVMFVG--CGQSYTD 574 (589)
Q Consensus 539 lTKlD~~d~k~G~als~~~~~g--~PI~fig--~Gq~v~D 574 (589)
+||+|.... --.+-.+....+ .|+..+. +|+.+.+
T Consensus 281 ~NK~Dl~~~-~e~~~~l~~~l~~~~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 281 ANKMDMPEA-AENLEAFKEKLTDDYPVFPISAVTREGLRE 319 (342)
T ss_dssp EECTTSTTH-HHHHHHHHHHCCSCCCBCCCSSCCSSTTHH
T ss_pred EECccCCCC-HHHHHHHHHHhhcCCCEEEEECCCCcCHHH
Confidence 999998632 222333444444 3544444 3555443
No 356
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.05 E-value=0.00075 Score=63.59 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
...|+|+|..|||||||++.|++
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHh
Confidence 45799999999999999999986
No 357
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=97.04 E-value=0.0071 Score=57.41 Aligned_cols=103 Identities=13% Similarity=0.223 Sum_probs=76.1
Q ss_pred eEEEeecCcEEEeeccccCCCCCCChhHHHHHhhhhccccCC----CceeecCCCCceeeEEEEecccceEEEEEecccc
Q 007789 4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL----ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRIL 79 (589)
Q Consensus 4 ~~~i~t~gG~vLW~~~~~~~~~~~~~in~li~~v~leer~~~----~~~~~~~~~~~~~lkw~~~ne~~lvfv~vyq~~l 79 (589)
..+.+.+|.+||..++.. . .....+.+.+| +|... .+|+++ +|+.++...| |++|+++=.+-.
T Consensus 57 ~Ya~VArg~tiLAE~t~~----~-gnf~~va~~iL--~kip~~~~r~t~~~~----~y~fHyl~~d--gl~yl~i~D~~~ 123 (173)
T 4afi_A 57 LFAVVARGTTILAKHAWC----G-GNFLEVTEQIL--AKIPSENNKLTYSHG----NYLFHYICQD--RIVYLCITDDDF 123 (173)
T ss_dssp EEEEEEETTEEEEEEESS----C-CCHHHHHHHHH--TTSCSSSEEEEEEET----TEEEEEEEET--TEEEEEEEETTS
T ss_pred EEEEEECCCEEEEEccCC----C-CCHHHHHHHHH--HhCCCCCCeEEEEEC----CEEEEEEEEC--CEEEEEEECCcc
Confidence 356788999999984332 2 33457888877 44422 478999 9999998865 688999877777
Q ss_pred chhhHHHHHHHHHHHHHHhcCCcC---CCccchHHHHHHHHHHH
Q 007789 80 HLLYVDDLLAMMKQSFSEIYDPKR---TDYSDFDEMFRQLRKEA 120 (589)
Q Consensus 80 ~l~yvd~ll~~v~~~F~~~y~~~~---~~~~~f~~~f~~~l~~~ 120 (589)
.-.=.=.||++|+.+|...|+... ..| .|+.+|...|++.
T Consensus 124 ~rr~aF~FLedI~~eF~~~yg~~~~ta~py-a~~~eF~~~L~~~ 166 (173)
T 4afi_A 124 ERSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQ 166 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGTCCTT-TTHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHhchhhhhccCc-chhHHHHHHHHHH
Confidence 655556688999999999997543 345 7898999998765
No 358
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.04 E-value=0.00068 Score=75.06 Aligned_cols=84 Identities=17% Similarity=0.045 Sum_probs=52.2
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
++...++||+|-..-.....+.+. ..|.+|+|-+++.|...... . .+..+.... ....+++||+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~------~aD~allVvDa~~g~~~~t~-~----~~~~~~~~~---iPiivviNK~Dl 146 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLT------AVDSALMVIDAAKGVEPRTI-K----LMEVCRLRH---TPIMTFINKMDR 146 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGG------GCSEEEEEEETTTCSCHHHH-H----HHHHHHTTT---CCEEEEEECTTS
T ss_pred CEEEEEEECCCchhHHHHHHHHHH------hCCEEEEEEeCCCCCCHHHH-H----HHHHHHHcC---CCEEEEEeCCCC
Confidence 456789999997665555555554 78899999899998876543 2 222222222 235689999998
Q ss_pred cccchh-hhhHhHHHhCCC
Q 007789 545 IDDKVG-AALSMVYVSGAP 562 (589)
Q Consensus 545 ~d~k~G-~als~~~~~g~P 562 (589)
.....- .+-.+....+.+
T Consensus 147 ~~~~~~~~l~ei~~~l~~~ 165 (528)
T 3tr5_A 147 DTRPSIELLDEIESILRIH 165 (528)
T ss_dssp CCSCHHHHHHHHHHHHCCE
T ss_pred ccccHHHHHHHHHHhhCCC
Confidence 643322 233344445553
No 359
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.04 E-value=0.00018 Score=83.17 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=62.5
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHhhC---CcEEEEcccccCccchhhhhHhhhhccccceec-cCCCCCHHHHH
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE-KGYEKDPAIVA 454 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~---~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~-~~~~~d~~~ia 454 (589)
..|+ +++++||||+||||++..+++..... ++.|.+. -..|..+..+...+...+++.+.. .++....
T Consensus 107 ~~~~--~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl--~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~---- 178 (773)
T 2xau_A 107 QNNQ--IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT--QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF---- 178 (773)
T ss_dssp HHCS--EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE--ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETT----
T ss_pred hCCC--eEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec--CchHHHHHHHHHHHHHHhCCchhheecceecc----
Confidence 3567 89999999999999998887654433 3345543 235666655555555544433211 0111000
Q ss_pred HHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCC-CCCHHHH
Q 007789 455 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQ 514 (589)
Q Consensus 455 ~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~-GlD~~~q 514 (589)
-........++-.++|+.++..+.+.+. .++++|++ |||.. ++|....
T Consensus 179 ------~~~~~~~~~I~v~T~G~l~r~l~~~~~l-----~~~~~lIl-DEah~R~ld~d~~ 227 (773)
T 2xau_A 179 ------ENKTSNKTILKYMTDGMLLREAMEDHDL-----SRYSCIIL-DEAHERTLATDIL 227 (773)
T ss_dssp ------EEECCTTCSEEEEEHHHHHHHHHHSTTC-----TTEEEEEE-CSGGGCCHHHHHH
T ss_pred ------ccccCCCCCEEEECHHHHHHHHhhCccc-----cCCCEEEe-cCccccccchHHH
Confidence 0001112222333445554444443333 47778877 99986 8876543
No 360
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.03 E-value=0.0024 Score=72.93 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=70.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhC--CcEEEEcccccCc-cchhhhhHhhhhccccceeccCCCCCHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDTFR-SGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 459 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~--~GkV~l~~~Dt~R-igaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~ 459 (589)
...|+|+|..|+|||||++.|.+..... .|.|. ...++. .-..++.+... +.....
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~--~~~~~~D~~~~e~~~giT--i~~~~~----------------- 68 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETH--EGASQMDWMEQEQDRGIT--ITSAAT----------------- 68 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-----------------------------CCSEE-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCcccccccc--CCceecccchhhhhcCce--EeeeeE-----------------
Confidence 4589999999999999999998642211 11111 000000 00001100000 000000
Q ss_pred HhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEE
Q 007789 460 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 539 (589)
Q Consensus 460 ~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIl 539 (589)
.+...++...++||+|-..-.....++|. ..|.+|+|-+++.|...... ..+ ..+ .... ....+++
T Consensus 69 ~~~~~~~~i~liDTPG~~df~~~~~~~l~------~aD~~llVvDa~~g~~~~~~-~~~-~~~---~~~~---~p~ilvi 134 (693)
T 2xex_A 69 TAAWEGHRVNIIDTPGHVDFTVEVERSLR------VLDGAVTVLDAQSGVEPQTE-TVW-RQA---TTYG---VPRIVFV 134 (693)
T ss_dssp EEEETTEEEEEECCCCCSSCCHHHHHHHH------HCSEEEEEEETTTBSCHHHH-HHH-HHH---HHTT---CCEEEEE
T ss_pred EEEECCeeEEEEECcCCcchHHHHHHHHH------HCCEEEEEECCCCCCcHHHH-HHH-HHH---HHcC---CCEEEEE
Confidence 01122456789999998766666666665 68888888889988876543 222 222 2221 3456899
Q ss_pred ccccccccc
Q 007789 540 TKFDTIDDK 548 (589)
Q Consensus 540 TKlD~~d~k 548 (589)
||+|.....
T Consensus 135 NK~Dl~~~~ 143 (693)
T 2xex_A 135 NKMDKLGAN 143 (693)
T ss_dssp ECTTSTTCC
T ss_pred ECCCccccc
Confidence 999987543
No 361
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.02 E-value=0.00085 Score=61.56 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
+..|+|+|+.|||||||++.|.+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45799999999999999999973
No 362
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.01 E-value=0.00035 Score=66.60 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=29.4
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.+..|. +|+|+|++||||||+++.|++.+. .+.+...|.
T Consensus 17 ~~~~~~--~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~ 55 (207)
T 2qt1_A 17 RGSKTF--IIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDD 55 (207)
T ss_dssp CSCCCE--EEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGG
T ss_pred cCCCCe--EEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCc
Confidence 344565 999999999999999999998763 244444554
No 363
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.01 E-value=0.00041 Score=66.44 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=50.9
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|....+. +..... .+.+.+++|-+++....... ...+...+..... ...-.+++||+|..
T Consensus 64 ~~~~i~Dt~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~----~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGG-LRDGYY-----IQAQCAIIMFDVTSRVTYKN-VPNWHRDLVRVCE----NIPIVLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEECSGGGTSC-CCHHHH-----TTCCEEEEEEETTCHHHHHT-HHHHHHHHHHHST----TCCEEEEEECTTSS
T ss_pred EEEEEEeCCChHHHhH-HHHHHH-----hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCC----CCCEEEEEECCccc
Confidence 3566789988554332 222233 27888888876654322111 1222223322221 13346899999986
Q ss_pred ccchh-hhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 546 DDKVG-AALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 546 d~k~G-~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
+...- .+.......+.++..+. +|+++.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 133 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp SCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred cccccHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 43321 23334455577766654 46665543
No 364
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.00 E-value=0.0013 Score=71.90 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=75.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
+..|+++|..++|||||++.|.+... .. ..|.+. .+..+.. .+.+.+. .+.
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~----~~---~~d~~~---~e~~~Gi--Ti~~~~~-----------------~~~ 69 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIAS----TS---AHDKLP---ESQKRGI--TIDIGFS-----------------AFK 69 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------------------CCC-----------------EEE
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCc----cc---cccccc---ccccCcc--EEecceE-----------------EEE
Confidence 34899999999999999999975320 00 011100 0000000 0000000 011
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
..+....++||+|-..-. ..+..-. ...|.++||-+++.|..+... +.+..+.... ..+ .+++||+
T Consensus 70 ~~~~~i~iiDtPGh~~~~-~~~~~~~-----~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~--ip~-IvviNK~ 135 (482)
T 1wb1_A 70 LENYRITLVDAPGHADLI-RAVVSAA-----DIIDLALIVVDAKEGPKTQTG-----EHMLILDHFN--IPI-IVVITKS 135 (482)
T ss_dssp ETTEEEEECCCSSHHHHH-HHHHHHT-----TSCCEEEEEEETTTCSCHHHH-----HHHHHHHHTT--CCB-CEEEECT
T ss_pred ECCEEEEEEECCChHHHH-HHHHHHH-----hhCCEEEEEEecCCCccHHHH-----HHHHHHHHcC--CCE-EEEEECC
Confidence 134567889999864322 2222222 378999999888888766443 1222222222 234 7999999
Q ss_pred cccccc-hhh----hhHhHHHh----CCCEEEEe--cCCCcccc
Q 007789 543 DTIDDK-VGA----ALSMVYVS----GAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 543 D~~d~k-~G~----als~~~~~----g~PI~fig--~Gq~v~DL 575 (589)
|..+.. .-. +....... +.|+..+. +|+++.+|
T Consensus 136 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L 179 (482)
T 1wb1_A 136 DNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDEL 179 (482)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHH
T ss_pred CcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHH
Confidence 987421 111 11122222 56777765 56666543
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.99 E-value=0.0004 Score=70.75 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=29.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 423 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R 423 (589)
.|.+|.|+||+||||||+.+.|+..+. .+-+.| ..|++|
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~I-s~D~~R 70 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVI-DNDTFK 70 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEE-CTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEE-echHhH
Confidence 456999999999999999999987553 244444 467776
No 366
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.99 E-value=0.00025 Score=78.69 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=34.8
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcc
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 418 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~ 418 (589)
++++.+ +|. +++|+||||+||||+++.|++.+.+..++|.+.+
T Consensus 101 ~~~~~~-~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 101 KLTKSL-KGP--ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHSSSC-CSC--EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HhcccC-CCC--EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 344444 566 9999999999999999999999987777776655
No 367
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.99 E-value=0.00078 Score=62.43 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgl 406 (589)
..-|+|+|+.||||||+++.+++-
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999863
No 368
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.98 E-value=0.00036 Score=67.00 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=32.5
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCc--EEEEcccccCc
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV--SVMMAACDTFR 423 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G--kV~l~~~Dt~R 423 (589)
..|. +|+|+|++||||||+++.|+..+.+..| .+.+. .|.+|
T Consensus 23 ~~~~--~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~-~d~~r 66 (211)
T 1m7g_A 23 QRGL--TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD-GDNIR 66 (211)
T ss_dssp SSCE--EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC-HHHHT
T ss_pred CCCC--EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC-ChHHh
Confidence 3555 9999999999999999999999986656 55554 34333
No 369
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.98 E-value=0.0035 Score=63.19 Aligned_cols=114 Identities=21% Similarity=0.165 Sum_probs=66.8
Q ss_pred eEEEEEe-cCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhH---hhhh----cc--cc-ceeccC----CCC
Q 007789 384 YVVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR---THAR----RL--QV-PIFEKG----YEK 448 (589)
Q Consensus 384 ~iI~LVG-pNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~---~~~~----~l--~v-~l~~~~----~~~ 448 (589)
.+|+|++ --|+||||+...||..+...+.+|++..+|..+...-.-+. .+.+ .+ ++ .+...+ ...
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~~ 84 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAER 84 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTTS
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcCh
Confidence 3788875 56899999999999999888889999999984322111111 0100 01 11 111110 000
Q ss_pred C---HHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCC
Q 007789 449 D---PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 506 (589)
Q Consensus 449 d---~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt 506 (589)
. ......+.++.+. ..||+++||++++. ......++. ..|.+++|-+|.
T Consensus 85 ~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~--~~~~~~~l~------~aD~viiv~~~~ 136 (286)
T 2xj4_A 85 PEEEQVAGFEAAFARAM-AECDFILIDTPGGD--SAITRMAHG------RADLVVTPMNDS 136 (286)
T ss_dssp CHHHHHHHHHHHHHHHH-HHCSEEEEECCSSC--CHHHHHHHH------TCSEEEEEEESS
T ss_pred hhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCc--cHHHHHHHH------HCCEEEEEEcCC
Confidence 0 0123444555543 46899999998776 233333443 778888877763
No 370
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0012 Score=63.41 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
..-|+|+|+.|||||||++.|++
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHhc
Confidence 35799999999999999999986
No 371
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.97 E-value=0.00058 Score=64.83 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHH
Q 007789 381 RKPYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 381 Gep~iI~LVGpNGvGKTTlLakLAg 405 (589)
.+...|+|+|..||||||+++.+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 3456899999999999999999875
No 372
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.96 E-value=0.0015 Score=70.21 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=41.0
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
+....++||+|-.+-...+.+.+ ...|.+|||-+++.|..+... .....+..+ . ...-.+++||+|.
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~------~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~---~--~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGA------STCDLAIILVDARYGVQTQTR--RHSYIASLL---G--IKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHH------TTCSEEEEEEETTTCSCHHHH--HHHHHHHHT---T--CCEEEEEEECTTT
T ss_pred CceEEEEECCChHHHHHHHHHHH------hhCCEEEEEEECCCCCcHHHH--HHHHHHHHc---C--CCeEEEEEEcCcC
Confidence 34577899999665433333333 389999999888888754332 111222211 1 1123578999998
Q ss_pred cc
Q 007789 545 ID 546 (589)
Q Consensus 545 ~d 546 (589)
.+
T Consensus 170 ~~ 171 (434)
T 1zun_B 170 NG 171 (434)
T ss_dssp TT
T ss_pred Cc
Confidence 74
No 373
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.95 E-value=0.0027 Score=59.39 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
..-|+|+|+.||||||+++.+++
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999975
No 374
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.94 E-value=0.00038 Score=64.37 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHH
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAg 405 (589)
++..|+|+|+.||||||+++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 375
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=96.94 E-value=0.0044 Score=65.41 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=34.0
Q ss_pred CceEEEEE-ecCCCcHHHHHHHHHHhHh------hCCcEEEEcccccC
Q 007789 382 KPYVVVFV-GVNGVGKSTNLAKVAYWLL------QHKVSVMMAACDTF 422 (589)
Q Consensus 382 ep~iI~LV-GpNGvGKTTlLakLAgll~------~~~GkV~l~~~Dt~ 422 (589)
.+.+|+|+ |--|+||||+...||..+. ..+.+|++..+|..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 35588888 5678999999999999886 35789999999973
No 376
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.0002 Score=73.96 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=29.5
Q ss_pred cccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEE
Q 007789 376 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 414 (589)
Q Consensus 376 ~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV 414 (589)
..+..|+...+.|+||+|+||||+++.|++.+.+..+.+
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 334455521289999999999999999999887766543
No 377
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.92 E-value=0.0019 Score=61.08 Aligned_cols=23 Identities=30% Similarity=0.190 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
..-|+|+|..||||||+++.+.+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 378
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.92 E-value=0.00097 Score=66.08 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=35.3
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
.|+ -.|.+.|+.||||||++-.++..+...+.+|.+...|+.
T Consensus 4 ~g~-l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 4 RGR-LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH 45 (228)
T ss_dssp CCC-EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred Cce-EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 454 358889999999999999999888888889988888873
No 379
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.90 E-value=0.0014 Score=71.37 Aligned_cols=117 Identities=24% Similarity=0.233 Sum_probs=59.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
..|+|+|++|||||||++.|++.-... . .+. .+ ... .. ....+..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~------v-~~~--~g--------------------tT~---d~---~~~~i~~ 269 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAI------V-TDL--PG--------------------TTR---DV---VESQLVV 269 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSC------C-SCC--TT--------------------CCH---HH---HHHEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCccc------c-cCC--CC--------------------eeE---EE---EEEEEEE
Confidence 369999999999999999998732110 0 000 00 000 00 0111223
Q ss_pred cCCCccccccCccccccHHHHHHH--Hh-hhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRAL--SK-LIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 540 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL--~k-l~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlT 540 (589)
.+..+.++||+|-.... .....+ .. .......|++|+|-+++.+...... ..+..+.. ....+++|
T Consensus 270 ~g~~v~liDT~G~~~~~-~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~-----~i~~~l~~-----~piivV~N 338 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETS-DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQ-----EIYEQVKH-----RPLILVMN 338 (462)
T ss_dssp TTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHH-----HHHHHHTT-----SCEEEEEE
T ss_pred CCEEEEEEECCccccch-hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHH-----HHHHhccC-----CcEEEEEE
Confidence 45567899999853321 111111 00 1122478999999888887776542 22333322 24578999
Q ss_pred cccccc
Q 007789 541 KFDTID 546 (589)
Q Consensus 541 KlD~~d 546 (589)
|+|...
T Consensus 339 K~Dl~~ 344 (462)
T 3geh_A 339 KIDLVE 344 (462)
T ss_dssp CTTSSC
T ss_pred CCCCCc
Confidence 999863
No 380
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.89 E-value=0.0036 Score=71.37 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=46.1
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
++...++||+|-..-.....++|. ..|.+++|-+++.|...... ..+ ..+ .... ....+++||+|.
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~------~aD~~ilVvDa~~g~~~~t~-~~~-~~~---~~~~---~p~ivviNKiD~ 141 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMR------VLDGAIVVFDSSQGVEPQSE-TVW-RQA---EKYK---VPRIAFANKMDK 141 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHH------HCSEEEEEEETTTCSCHHHH-HHH-HHH---HHTT---CCEEEEEECTTS
T ss_pred CeEEEEEECcCccchHHHHHHHHH------HCCEEEEEEECCCCcchhhH-HHH-HHH---HHcC---CCEEEEEECCCc
Confidence 466789999997665555555555 67888888889988876543 222 222 2221 335689999998
Q ss_pred cccc
Q 007789 545 IDDK 548 (589)
Q Consensus 545 ~d~k 548 (589)
....
T Consensus 142 ~~~~ 145 (691)
T 1dar_A 142 TGAD 145 (691)
T ss_dssp TTCC
T ss_pred ccCC
Confidence 7544
No 381
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.88 E-value=0.00046 Score=65.62 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=25.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.+|+|+|++||||||+++.|+++ |...+.+-+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH
Confidence 58999999999999999999982 4444544333
No 382
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=96.88 E-value=0.0032 Score=66.70 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=27.1
Q ss_pred CceEEEEE-ecCCCcHHHHHHHHHHhHh------hCCcEEEEcccccC
Q 007789 382 KPYVVVFV-GVNGVGKSTNLAKVAYWLL------QHKVSVMMAACDTF 422 (589)
Q Consensus 382 ep~iI~LV-GpNGvGKTTlLakLAgll~------~~~GkV~l~~~Dt~ 422 (589)
.+.+|+|+ |--|+||||+...||..+. ..+.+|++..+|..
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 45588888 6778999999999999886 46789999999973
No 383
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.88 E-value=0.00049 Score=73.70 Aligned_cols=63 Identities=8% Similarity=0.035 Sum_probs=46.1
Q ss_pred cCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 473 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 473 TSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
.||||++++.|+++|+.. ...+|+++|| |||+++||+..+. .+.+.|..+... +.+.||+|+-
T Consensus 334 lS~Gq~~~~~la~~la~~-~~~~~~~lll-DEp~~~LD~~~~~-~l~~~l~~~~~~----~~~~ii~th~ 396 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAIN-SYQPSPFFVL-DEVDAALDITNVQ-RIAAYIRRHRNP----DLQFIVISLK 396 (430)
T ss_dssp SCHHHHHHHHHHHHHHHH-TSSCCSEEEE-SSTTTTCCHHHHH-HHHHHHHHHCBT----TBEEEEECSC
T ss_pred CCcchHHHHHHHHHHHHh-cCCCCCEEEe-CCCcccCCHHHHH-HHHHHHHHHhcC----CCEEEEEECC
Confidence 499999999999999831 1236788887 9999999998874 343666655432 4567777763
No 384
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.88 E-value=0.00035 Score=78.34 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=35.6
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCC-cEEEEccc
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK-VSVMMAAC 419 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~-GkV~l~~~ 419 (589)
.+++.+..|+ .++|+||||+||||+++.|++++.+.. +.+.+.+.
T Consensus 52 ~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 52 VIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp HHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred hccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 3444455677 899999999999999999999998876 66666543
No 385
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.87 E-value=0.00062 Score=62.55 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
|.+.+|+||||+||||++..|+..+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999999755
No 386
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.86 E-value=0.00035 Score=64.93 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHH
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVA 404 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLA 404 (589)
++..|+|+|+.||||||+++.+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999884
No 387
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.85 E-value=0.0011 Score=63.21 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgl 406 (589)
..-|+|+|+.|||||||++.|++.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999873
No 388
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.84 E-value=0.01 Score=64.09 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=81.8
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhH--hhhhccccceec--cC
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR--THARRLQVPIFE--KG 445 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~--~~~~~l~v~l~~--~~ 445 (589)
-|+.+.--+.+|. ++.|.|++|+||||++..||......+..|++.....-. +|+. ..+...++++.. .+
T Consensus 186 ~LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~----~ql~~R~~~~~~~i~~~~l~~g 259 (444)
T 3bgw_A 186 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK----KENIKRLIVTAGSINAQKIKAA 259 (444)
T ss_dssp HHHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT----THHHHHHHHHHSCCCHHHHHHT
T ss_pred HHHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH----HHHHHHHHHHHcCCCHHHHhcc
Confidence 3444433456888 999999999999999999997665557789888765421 2222 112222332110 11
Q ss_pred ---CCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCC--EEEEEecCCCCC-------CHHH
Q 007789 446 ---YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGN-------DAVD 513 (589)
Q Consensus 446 ---~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~Pd--lILLVDEPt~Gl-------D~~~ 513 (589)
...+.......++..+. .....+.|+++- .-..|...+.+++...+++ +|++ |-- ..+ +...
T Consensus 260 ~~~l~~~~~~~l~~a~~~l~--~~~l~i~d~~~~--s~~~i~~~ir~l~~~~~~~~~lIVI-D~L-q~~~~~~~~~~r~~ 333 (444)
T 3bgw_A 260 RRDFASEDWGKLSMAIGEIS--NSNINIFDKAGQ--SVNYIWSKTRQTKRKNPGKRVIVMI-DYL-QLLEPAKANDSRTN 333 (444)
T ss_dssp GGGTCCSCHHHHHHHHHHHH--TSCEEEECCSSC--BHHHHHHHHHHHHHHSCSSCEEEEE-ECS-TTSBCSCSSSCHHH
T ss_pred cCCCCHHHHHHHHHHHHHHh--cCCEEEECCCCC--CHHHHHHHHHHHHHHhCCCCeEEEE-ecH-HhccCCCCCCCHHH
Confidence 11112222333444332 233444455542 2223333344444456788 7665 642 211 2222
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
+...+...|+.++.. .++.+++++.+-
T Consensus 334 ~i~~i~~~Lk~lAke---~~v~vi~lsql~ 360 (444)
T 3bgw_A 334 QISQISRDLKKMARE---LDVVVIALSQLS 360 (444)
T ss_dssp HHHHHHHHHHHHHHH---HTCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHH---hCCeEEEEecCC
Confidence 333344555555543 377778877653
No 389
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.82 E-value=0.0038 Score=67.21 Aligned_cols=160 Identities=12% Similarity=0.098 Sum_probs=82.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhh-CCcEEEEcccccCccchhhhhH--hhhhccccceec--
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLR--THARRLQVPIFE-- 443 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~-~~GkV~l~~~Dt~RigaveQL~--~~~~~l~v~l~~-- 443 (589)
..|+.+.--+.+|+ ++.|.|++|+||||++..||..... .+..|++.....- .+|+. .++...+++...
T Consensus 188 ~~LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~----~~~l~~R~~~~~~~i~~~~l~ 261 (444)
T 2q6t_A 188 KELDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP----AAQLTLRMMCSEARIDMNRVR 261 (444)
T ss_dssp HHHHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC----HHHHHHHHHHHHTTCCTTTCC
T ss_pred HhhhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC----HHHHHHHHHHHHcCCCHHHHh
Confidence 34444443466888 9999999999999999999986654 4567888765531 12222 112223333211
Q ss_pred cC-CCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH---------HH
Q 007789 444 KG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA---------VD 513 (589)
Q Consensus 444 ~~-~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~---------~~ 513 (589)
.+ ...+.......++..+. .....+.|+++-.. ..+...+.++....++++|++ |....-... ..
T Consensus 262 ~g~l~~~~~~~~~~a~~~l~--~~~l~i~d~~~~s~--~~l~~~~~~l~~~~~~~lIvI-D~l~~~~~~~~~~~~~~r~~ 336 (444)
T 2q6t_A 262 LGQLTDRDFSRLVDVASRLS--EAPIYIDDTPDLTL--MEVRARARRLVSQNQVGLIII-DYLQLMSGPGSGKSGENRQQ 336 (444)
T ss_dssp GGGCCHHHHHHHHHHHHHHH--TSCEEEECCTTCBH--HHHHHHHHHHHHHSCCCEEEE-ECGGGCBCC-------CHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh--cCCEEEECCCCCCH--HHHHHHHHHHHHHcCCCEEEE-cChhhcCCCcCCCCCCCHHH
Confidence 11 11112223334444332 22333444432221 223333334444568888876 886432221 11
Q ss_pred HHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 514 QLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 514 q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
....+...|+.++.. .++.+++++.+
T Consensus 337 ~i~~i~~~Lk~lAke---~~v~vi~lsql 362 (444)
T 2q6t_A 337 EIAAISRGLKALARE---LGIPIIALSQL 362 (444)
T ss_dssp HHHHHHHHHHHHHHH---HTSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHH---hCCeEEEEecC
Confidence 223333455555543 37777887764
No 390
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.77 E-value=0.0027 Score=72.48 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=41.5
Q ss_pred CCccccccCcccc--ccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHH-hhcCCCCCCccEEEEccc
Q 007789 466 SDVVLVDTAGRMQ--DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD-LSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 466 ~d~vliDTSGg~q--qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~-l~~~~~~~~it~IIlTKl 542 (589)
..+.++||+|-.. ....++..... +.|.+|+|-+++.+....+. ..+.. +.... ....+|+||+
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~-----~aD~vL~Vvda~~~~s~~e~-----~~l~~~l~~~~---~~iiiVlNK~ 240 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVN-----NCHAILFVMRASQPCTLGER-----RYLENYIKGRG---LTVFFLVNAW 240 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHH-----SSSEEEEEEETTSTTCHHHH-----HHHHHHTTTSC---CCEEEEEECG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHH-----hCCEEEEEEeCCCccchhHH-----HHHHHHHHhhC---CCEEEEEECc
Confidence 4678999998432 12344433442 78999999888877765442 12222 22221 2267899999
Q ss_pred cccc
Q 007789 543 DTID 546 (589)
Q Consensus 543 D~~d 546 (589)
|...
T Consensus 241 Dl~~ 244 (695)
T 2j69_A 241 DQVR 244 (695)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9864
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.77 E-value=0.0005 Score=65.40 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=28.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 417 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~ 417 (589)
+|+|+|++||||||+++.|+..+...+..|.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 799999999999999999999998776676654
No 392
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.74 E-value=0.0034 Score=66.65 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=67.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCcc-chhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS-GAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Ri-gaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
..|+|+|..|+|||||++.|++.....+.. ..|.. ...+++.. ....++.+.... ..+.
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~------~~~~~~~~~d~~~~-e~~~GiTi~~~~-------------~~~~ 71 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPN------VEVKDYGDIDKAPE-ERARGITINTAH-------------VEYE 71 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTT------SCCCCHHHHSCSHH-HHHHTCCCSCEE-------------EEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCcc------ccccchhhccCCHH-HHHcCCCEEeee-------------eEec
Confidence 479999999999999999999865443210 01110 01111110 000111110000 0011
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc--EEEEc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID--GILLT 540 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it--~IIlT 540 (589)
..+....++||+|-..-.....+.+ ...|.+|||-+++.|...... .....+. .. ++. .+++|
T Consensus 72 ~~~~~~~iiDtpG~~~f~~~~~~~~------~~aD~~ilVvda~~g~~~qt~--~~l~~~~---~~----~ip~iivviN 136 (405)
T 2c78_A 72 TAKRHYSHVDCPGHADYIKNMITGA------AQMDGAILVVSAADGPMPQTR--EHILLAR---QV----GVPYIVVFMN 136 (405)
T ss_dssp CSSCEEEEEECCCSGGGHHHHHHHH------TTCSSEEEEEETTTCCCHHHH--HHHHHHH---HT----TCCCEEEEEE
T ss_pred cCCeEEEEEECCChHHHHHHHHHHH------HHCCEEEEEEECCCCCcHHHH--HHHHHHH---Hc----CCCEEEEEEE
Confidence 2345678999998665433333333 278888888888888765332 2212222 21 333 47899
Q ss_pred ccccc
Q 007789 541 KFDTI 545 (589)
Q Consensus 541 KlD~~ 545 (589)
|+|..
T Consensus 137 K~Dl~ 141 (405)
T 2c78_A 137 KVDMV 141 (405)
T ss_dssp CGGGC
T ss_pred Ccccc
Confidence 99987
No 393
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.72 E-value=0.0027 Score=70.58 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgl 406 (589)
...|+|+|..|||||||++.|.|.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999874
No 394
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.68 E-value=0.0033 Score=60.17 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
.-|+|+|..|||||||++.+++
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 5799999999999999999976
No 395
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.68 E-value=0.0041 Score=56.74 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
.+-|+|+|..||||||+++.+++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999986
No 396
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.68 E-value=0.012 Score=57.42 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=22.7
Q ss_pred ccccCCceEEEEEecCCCcHHHHHHHHHH
Q 007789 377 AKEQRKPYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 377 ~i~~Gep~iI~LVGpNGvGKTTlLakLAg 405 (589)
.+..|+ .++++||+|+||||++..+..
T Consensus 72 ~i~~g~--~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNS--VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCS--EEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCC--EEEEEeCCCCCcHHhHHHHHh
Confidence 345788 999999999999999887764
No 397
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.66 E-value=0.00089 Score=63.42 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAg 405 (589)
.+|+|+|+|||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999999
No 398
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.66 E-value=0.0021 Score=60.78 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.0
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll 407 (589)
..+|.+|+|+|+.||||||+.+.|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4456799999999999999999998654
No 399
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.65 E-value=0.044 Score=57.09 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=34.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.++.+.|.-|+||||+...||..+...+.+|++..+|.
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 36777789999999999999999888889999999998
No 400
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.64 E-value=0.0018 Score=69.31 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=7.7
Q ss_pred cCCCccccccC
Q 007789 464 NGSDVVLVDTA 474 (589)
Q Consensus 464 ~~~d~vliDTS 474 (589)
....+.++|.+
T Consensus 354 ~~~~~lllDEp 364 (430)
T 1w1w_A 354 QPSPFFVLDEV 364 (430)
T ss_dssp SCCSEEEESST
T ss_pred CCCCEEEeCCC
Confidence 45678888883
No 401
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.63 E-value=0.0071 Score=56.62 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=39.7
Q ss_pred CCccccccCccccccHHH---HHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 466 SDVVLVDTAGRMQDNEPL---MRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~L---araL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
+...++||+|..+-+... -..+. +.+.+++|-+.+... ......+...+..+.... ....-.++.||+
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~~------~~~~~i~v~d~~~~~--~~~~~~~~~~l~~~~~~~-~~~piilv~nK~ 139 (196)
T 3llu_A 69 VNFQIWDFPGQMDFFDPTFDYEMIFR------GTGALIYVIDAQDDY--MEALTRLHITVSKAYKVN-PDMNFEVFIHKV 139 (196)
T ss_dssp CCEEEEECCSSCCTTCTTCCHHHHHH------TCSEEEEEEETTSCC--HHHHHHHHHHHHHHHHHC-TTCEEEEEEECG
T ss_pred eEEEEEECCCCHHHHhhhhhcccccc------cCCEEEEEEECCCch--HHHHHHHHHHHHHHHhcC-CCCcEEEEEecc
Confidence 567788999876632221 22232 788888887776642 122333334444442111 123456889999
Q ss_pred ccc
Q 007789 543 DTI 545 (589)
Q Consensus 543 D~~ 545 (589)
|..
T Consensus 140 Dl~ 142 (196)
T 3llu_A 140 DGL 142 (196)
T ss_dssp GGS
T ss_pred ccC
Confidence 965
No 402
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.62 E-value=0.0094 Score=68.13 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=45.3
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
.+...++||+|...-.....++|. ..|.+|+|-+++.|...... .. +..+.... ....+++||+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~------~aD~aIlVvDa~~gv~~qt~-~~----~~~~~~~~---ip~ilviNKiD~ 146 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMR------VLDGAVMVYCAVGGVQPQSE-TV----WRQANKYK---VPRIAFVNKMDR 146 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHH------HCCEEEEEEeCCCCCcHHHH-HH----HHHHHHcC---CCEEEEEeCCCc
Confidence 367889999997654445555555 67888888889988754332 22 22222211 234689999998
Q ss_pred cccchh
Q 007789 545 IDDKVG 550 (589)
Q Consensus 545 ~d~k~G 550 (589)
.....-
T Consensus 147 ~~~~~~ 152 (704)
T 2rdo_7 147 MGANFL 152 (704)
T ss_pred ccccHH
Confidence 654433
No 403
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.60 E-value=0.00092 Score=63.80 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=24.6
Q ss_pred ccCCceEEEEEecCCCcHHHHHHHHHHhHh
Q 007789 379 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 379 ~~Gep~iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
.+|. +|+|+||+||||||+++.|+..+.
T Consensus 10 ~~~~--~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIP--PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCC--CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCC--EEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566 999999999999999999998763
No 404
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.60 E-value=0.0014 Score=72.00 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=37.6
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.++.++++.++.| ++|+||||+||||+++.|++.+. .+-|.+.+.++
T Consensus 54 ~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred hhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 3567777776555 79999999999999999999764 56777777665
No 405
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.59 E-value=0.014 Score=60.05 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=34.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.++.+-|.-|+||||+...||..+...+.+|++..+|.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 47778899999999999999999888888999999997
No 406
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.59 E-value=0.012 Score=61.32 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=35.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
+.++.+.|.-|+||||+...||..+...+.+|++..+|.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 448889999999999999999999988888999999995
No 407
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.59 E-value=0.0015 Score=61.68 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=29.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 418 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~ 418 (589)
..+.|.||+|+||||+++.|+..+...+..+.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 38899999999999999999998877766666543
No 408
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.58 E-value=0.0041 Score=71.62 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=43.2
Q ss_pred CccccccCcccccc---------HHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEE
Q 007789 467 DVVLVDTAGRMQDN---------EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 537 (589)
Q Consensus 467 d~vliDTSGg~qqr---------~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~I 537 (589)
..+++||+|-.... ..+-+.+..++. ...+++|+|.++..+....+.. ..+..+.... ....+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l----~ll~~L~~~g---~pvIl 222 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDAL----KIAKEVDPQG---QRTIG 222 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHH----HHHHHHCTTC---SSEEE
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHH----HHHHHHHhcC---CCEEE
Confidence 56789999854411 122222222222 5788999998887765433321 2333443332 35679
Q ss_pred EEccccccccchhh
Q 007789 538 LLTKFDTIDDKVGA 551 (589)
Q Consensus 538 IlTKlD~~d~k~G~ 551 (589)
|+||+|.+ .+...
T Consensus 223 VlNKiDlv-~~~~~ 235 (772)
T 3zvr_A 223 VITKLDLM-DEGTD 235 (772)
T ss_dssp EEECTTSS-CTTCC
T ss_pred EEeCcccC-Ccchh
Confidence 99999997 44443
No 409
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.58 E-value=0.0012 Score=62.00 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.9
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHh
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl 406 (589)
++++....+. +|+|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~--~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGI--NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSC--EEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCC--EEEEECCCCCCHHHHHHHHHHh
Confidence 4566666666 9999999999999999999875
No 410
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.56 E-value=0.0087 Score=65.27 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=80.2
Q ss_pred ccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhC-CcEEEEcccccCccchhhhhH--hhhhccccceec----
Q 007789 371 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLR--THARRLQVPIFE---- 443 (589)
Q Consensus 371 L~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-~GkV~l~~~Dt~RigaveQL~--~~~~~l~v~l~~---- 443 (589)
|+.+.--+.+|+ ++.|.|++|+||||++..||...... +..|++.....- .+|+. .++...++++..
T Consensus 232 LD~~lgGl~~G~--l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s----~~~l~~r~~~~~~~~~~~~~~~~ 305 (503)
T 1q57_A 232 INDKTLGARGGE--VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES----VEETAEDLIGLHNRVRLRQSDSL 305 (503)
T ss_dssp HHHHHCCCCTTC--EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC----HHHHHHHHHHHHTTSCCTTCHHH
T ss_pred hhHhhcccCCCe--EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC----HHHHHHHHHHHHcCCChhhcccc
Confidence 443333356888 99999999999999999998766554 668888765532 12322 222333444311
Q ss_pred -cC-CCCCHHHHHHHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCC-------CHHHH
Q 007789 444 -KG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN-------DAVDQ 514 (589)
Q Consensus 444 -~~-~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~Gl-------D~~~q 514 (589)
.+ ...+....+.+.+ +......+.|+++... -..|...+..++...+|++|++ |- +..+ +....
T Consensus 306 ~~g~l~~~~~~~~~~~~----~~~~~l~i~~~~~~~~-~~~i~~~i~~~~~~~~~~lvVI-D~-l~~l~~~~~~~~~~~~ 378 (503)
T 1q57_A 306 KREIIENGKFDQWFDEL----FGNDTFHLYDSFAEAE-TDRLLAKLAYMRSGLGCDVIIL-DH-ISIVVSASGESDERKM 378 (503)
T ss_dssp HHHHHHTSHHHHHHHHH----HTTTCEEEECCC---C-HHHHHHHHHHHHHTTCCSEEEE-EC-TTCCCSCCSCCCHHHH
T ss_pred ccCCCCHHHHHHHHHHH----hccCCEEEECCCCCCC-HHHHHHHHHHHHHhcCCCEEEE-cc-chhcCCCCCCCCHHHH
Confidence 00 0111111111221 1222334445544332 2234434444555568888776 74 3322 22223
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEEcccc
Q 007789 515 LSKFNQKLADLSSSPNPQLIDGILLTKFD 543 (589)
Q Consensus 515 ~~~f~~~l~~l~~~~~~~~it~IIlTKlD 543 (589)
...+-..|+.++.. .++++++++.+-
T Consensus 379 ~~~~~~~Lk~lak~---~~i~vi~~~q~~ 404 (503)
T 1q57_A 379 IDNLMTKLKGFAKS---TGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHHHHHH---HTCEEEEEEECC
T ss_pred HHHHHHHHHHHHHH---HCCeEEEEEcCC
Confidence 33344455555543 377778876654
No 411
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.56 E-value=0.0065 Score=66.87 Aligned_cols=97 Identities=5% Similarity=0.005 Sum_probs=51.1
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 544 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~ 544 (589)
+....++||+|...-.. +...... +++++++|-+++...+. ..+...+..+.. ...-.++.||+|.
T Consensus 97 ~~~~~i~Dt~G~e~~~~-~~~~~l~-----~~d~ii~V~D~s~~~~~----~~~~~~l~~~~~----~~pvilV~NK~Dl 162 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHA-SHQFFMT-----RSSVYMLLLDSRTDSNK----HYWLRHIEKYGG----KSPVIVVMNKIDE 162 (535)
T ss_dssp TCEEEEECCCSCCTTTT-TCHHHHH-----SSEEEEEEECGGGGGGH----HHHHHHHHHHSS----SCCEEEEECCTTT
T ss_pred eEEEEEEECCcHHHHHH-HHHHHcc-----CCcEEEEEEeCCCchhH----HHHHHHHHHhCC----CCCEEEEEECCCc
Confidence 45678899998544332 2222332 78899988877765332 222234443332 1234699999998
Q ss_pred cccch---hhhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 545 IDDKV---GAALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 545 ~d~k~---G~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
...+. -.+.......+.|+..+. +|+++.+|
T Consensus 163 ~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 163 NPSYNIEQKKINERFPAIENRFHRISCKNGDGVESI 198 (535)
T ss_dssp CTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTH
T ss_pred ccccccCHHHHHHHHHhcCCceEEEecCcccCHHHH
Confidence 63221 112233334566766665 56666654
No 412
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.55 E-value=0.0042 Score=66.93 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=25.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhC--CcEEEE
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMM 416 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~--~GkV~l 416 (589)
.+.|.||+|+||||+++.|++.+... +..+..
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~ 165 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 78999999999999999999877554 344443
No 413
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.53 E-value=0.0014 Score=63.12 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
|.+.+|+||||+||||++..|...+-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45999999999999999999986554
No 414
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.52 E-value=0.0025 Score=62.55 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=31.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCcc
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 424 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Ri 424 (589)
+|.+|.|+||+||||+|..+.|+-.+ |=+.|...|.+|.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~----g~~hIstGdllR~ 66 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF----HFNHLSSGDLLRA 66 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH----CCEEECHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH----CCceEcHHHHHHH
Confidence 45699999999999999999999755 3456777788774
No 415
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.52 E-value=0.031 Score=57.19 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQ 409 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~ 409 (589)
+..+.|+||+|+||||+++.++..+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 448999999999999999999987754
No 416
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.52 E-value=0.011 Score=62.11 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=33.7
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 419 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~ 419 (589)
++.|. ++.|.|++|+||||++..|+......+++|++...
T Consensus 60 l~~G~--ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTS--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 55788 99999999999999999999877777777777654
No 417
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.50 E-value=0.014 Score=61.57 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=34.4
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
++.|. ++.|.|++|+||||++..|+......++.|++...+
T Consensus 71 l~~G~--li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 71 IPRGR--ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCc--EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45777 999999999999999999988766667788887655
No 418
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.50 E-value=0.0023 Score=67.19 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=40.5
Q ss_pred cCccccccHHHH------HHHHhhhhhcC-CCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 473 TAGRMQDNEPLM------RALSKLIYLNN-PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 473 TSGg~qqr~~La------raL~kl~~~~~-PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
.|||+++++.|| ++|. .+ |+++|| |||++|||+..+...+ +.|..+.. ..+++++|+-
T Consensus 281 lS~G~~~~~~lal~la~a~~l~-----~~~~~~lll-DEp~~~LD~~~~~~l~-~~l~~~~~-----~~~vi~~th~ 345 (371)
T 3auy_A 281 LSGGEQIAVALSLRLAIANALI-----GNRVECIIL-DEPTVYLDENRRAKLA-EIFRKVKS-----IPQMIIITHH 345 (371)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-----SSCCSEEEE-ESTTTTCCHHHHHHHH-HHHHHCCS-----CSEEEEEESC
T ss_pred cCHHHHHHHHHHHHHHHHHHHh-----cCCCCeEEE-eCCCCcCCHHHHHHHH-HHHHHhcc-----CCeEEEEECh
Confidence 399999998654 4444 47 898888 9999999998765433 55555422 2356777763
No 419
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.46 E-value=0.0015 Score=59.94 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=27.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 423 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R 423 (589)
|.+|+|+|++||||||+.+.|+.. ..|-+.+. .|.+|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~-~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK---NPGFYNIN-RDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH---STTEEEEC-HHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh---cCCcEEec-HHHHH
Confidence 458999999999999999999872 22334443 46554
No 420
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.46 E-value=0.014 Score=61.11 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=34.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHh--hCCcEEEEccccc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDT 421 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~--~~~GkV~l~~~Dt 421 (589)
.++.+.|.-|+||||+...||..+. ..+.+|++..+|.
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 4899999999999999999999888 7888999999995
No 421
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.46 E-value=0.018 Score=64.04 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=35.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.++.+.|..|+||||+...||..+...+.+|++..+|.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 48899999999999999999998888888999999996
No 422
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.45 E-value=0.0086 Score=62.70 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=33.1
Q ss_pred EEEEE-ecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 385 VVVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 385 iI~LV-GpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
+|+|+ +.-|+||||+..-||..+...+.+|++..+|..
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q 41 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ 41 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 66776 567899999999999988888889999999975
No 423
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.45 E-value=0.0038 Score=63.91 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=44.3
Q ss_pred HhcCCCcCChhhHHHHHHHHHHHHHHhhHH---HHHHHHHHhcCcccccccccccc-cccccCCceEEEEEecCCCcHHH
Q 007789 323 SIAGKANLDKADLEPALKALKDRLMTKNVA---AMEEALVRILTPRRSIDILRDVH-AAKEQRKPYVVVFVGVNGVGKST 398 (589)
Q Consensus 323 ~~~~~~~l~~~~l~~~l~~l~~~Ll~~~V~---al~~~l~~il~p~~~i~iL~~Is-~~i~~Gep~iI~LVGpNGvGKTT 398 (589)
.+.....|++++...++...+..+ ..... .|.+....+..-...+..|+.+. --++.|+ ++.|.|++|+||||
T Consensus 37 ~L~~~~gis~~~a~~~i~~a~~~~-~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~GGl~~g~--i~~i~G~~gsGKT~ 113 (322)
T 2i1q_A 37 ELTDIEGISEKAAAKMIMGARDLC-DLGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQS--VTEFAGVFGSGKTQ 113 (322)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHHT-TCSCCCTHHHHHHHTTCCEECCSCHHHHHHTTSSEETTE--EEEEEESTTSSHHH
T ss_pred HHHHhhCcCHHHHHHHHHHHHHhh-hhcCCcHHHHHHHhccCCeecCCChhHHHhcCCCccCCe--EEEEECCCCCCHHH
Confidence 344445678888777776665442 11110 12111111000001122233222 1345777 99999999999999
Q ss_pred HHHHHHHh
Q 007789 399 NLAKVAYW 406 (589)
Q Consensus 399 lLakLAgl 406 (589)
++..++.-
T Consensus 114 la~~la~~ 121 (322)
T 2i1q_A 114 IMHQSCVN 121 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999863
No 424
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.44 E-value=0.0036 Score=65.69 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll 407 (589)
..|+|||++|||||||++.|.+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCC
Confidence 357999999999999999997653
No 425
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.42 E-value=0.014 Score=61.13 Aligned_cols=40 Identities=30% Similarity=0.299 Sum_probs=34.9
Q ss_pred CCceEEEEEe-cCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 381 RKPYVVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 381 Gep~iI~LVG-pNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
+++.+|+|+| .-|+||||+...||..+...+.+|++..+|
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3456999996 788999999999999888778899999998
No 426
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.41 E-value=0.0059 Score=59.04 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
|.+|+|+|+.||||||+++.|+..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3489999999999999999998754
No 427
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.39 E-value=0.013 Score=56.90 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=52.2
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...+.||+|.++-+ .+.....+ ..+.+++|-+.+.- +.......+...+..... +...-.+|-+|.|..
T Consensus 62 v~l~iwDtaGqe~~~-~l~~~~~~-----~a~~~ilv~di~~~-~Sf~~i~~~~~~i~~~~~---~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 62 IRLQLWDTAGLERFR-SLIPSYIR-----DSAAAVVVYDITNV-NSFQQTTKWIDDVRTERG---SDVIIMLVGNKTDLA 131 (216)
T ss_dssp EEEEEECCSCTTTCG-GGHHHHHT-----TCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHT---TSSEEEEEEECTTCG
T ss_pred EEEEEEECCCchhhh-hHHHHHhc-----cccEEEEEeecchh-HHHHHHHHHHHHHHHhcC---CCCeEEEEeeccchH
Confidence 345678999877654 33333442 77888887654432 222222222233333222 223445778999986
Q ss_pred ccch---hhhhHhHHHhCCCEEEEe--cCCCccc
Q 007789 546 DDKV---GAALSMVYVSGAPVMFVG--CGQSYTD 574 (589)
Q Consensus 546 d~k~---G~als~~~~~g~PI~fig--~Gq~v~D 574 (589)
+.+. --+..++...+.+...+. +|++|.+
T Consensus 132 ~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 132 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHH
Confidence 4332 234455666777644443 5666654
No 428
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.38 E-value=0.0034 Score=66.60 Aligned_cols=127 Identities=15% Similarity=0.124 Sum_probs=66.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCcc-chhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS-GAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~Ri-gaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
..|+++|..|+|||||++.|++.....+.. .|.. ...+.+.. .+.-++.+... + ..+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~-------~~~~~~~~d~~~~-e~~~giTi~~~-~------------~~~~ 62 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGA-------KFKKYEEIDNAPE-ERARGITINAA-H------------VEYS 62 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSB-------CCCCHHHHHSCCE-EEETTEEEECE-E------------EEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCcc-------ccchhhhhhcCHH-HHhcCcEEEee-e------------EEec
Confidence 468999999999999999999865433211 1110 00111000 00011111000 0 0011
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc--EEEEc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID--GILLT 540 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it--~IIlT 540 (589)
..+....++||+|-..-...+.+. ....|.++||-+++.|..+... +.+ ..+ ... ++. .+++|
T Consensus 63 ~~~~~~~iiDtpG~~~f~~~~~~~------~~~aD~~ilVvda~~g~~~qt~-e~l-~~~---~~~----~vp~iivviN 127 (397)
T 1d2e_A 63 TAARHYAHTDCPGHADYVKNMITG------TAPLDGCILVVAANDGPMPQTR-EHL-LLA---RQI----GVEHVVVYVN 127 (397)
T ss_dssp CSSCEEEEEECSSHHHHHHHHHHT------SSCCSEEEEEEETTTCSCHHHH-HHH-HHH---HHT----TCCCEEEEEE
T ss_pred cCCeEEEEEECCChHHHHHHHHhh------HhhCCEEEEEEECCCCCCHHHH-HHH-HHH---HHc----CCCeEEEEEE
Confidence 234567899999865422222111 2378999999889888765432 122 222 211 333 47899
Q ss_pred cccccc
Q 007789 541 KFDTID 546 (589)
Q Consensus 541 KlD~~d 546 (589)
|+|..+
T Consensus 128 K~Dl~~ 133 (397)
T 1d2e_A 128 KADAVQ 133 (397)
T ss_dssp CGGGCS
T ss_pred CcccCC
Confidence 999873
No 429
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.38 E-value=0.013 Score=56.34 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=32.2
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHh-HhhCCcEEEEccccc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKVSVMMAACDT 421 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgl-l~~~~GkV~l~~~Dt 421 (589)
+++|. ++.|.|++|+||||++..+|.- ....+..|++...+.
T Consensus 27 l~~G~--l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 27 FPEGT--TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EETTC--EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 56788 9999999999999999887753 344456777766543
No 430
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.36 E-value=0.002 Score=58.75 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
+|+|+|++||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999765
No 431
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.36 E-value=0.0082 Score=59.10 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=51.4
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc--ccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHH
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--ACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 457 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~--~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~a 457 (589)
+|. ++.+.|+.|+||||++-.++.-+...+.+|++. ..|. | + ..| +..++++.+..... .....+...+
T Consensus 11 ~G~--i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~-~~~---i~srlG~~~~~~~~-~~~~~i~~~i 81 (223)
T 2b8t_A 11 IGW--IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-S-IRN---IQSRTGTSLPSVEV-ESAPEILNYI 81 (223)
T ss_dssp CCE--EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-G-CSS---CCCCCCCSSCCEEE-SSTHHHHHHH
T ss_pred CcE--EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-H-HHH---HHHhcCCCcccccc-CCHHHHHHHH
Confidence 566 999999999999999999998887778888887 3443 4 3 122 23444443211111 1122222222
Q ss_pred HHHhcccCCCccccccCcc
Q 007789 458 IQEATRNGSDVVLVDTAGR 476 (589)
Q Consensus 458 l~~a~l~~~d~vliDTSGg 476 (589)
.+......+++++||.+--
T Consensus 82 ~~~~~~~~~dvViIDEaQ~ 100 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQF 100 (223)
T ss_dssp HSTTSCTTCCEEEECSGGG
T ss_pred HHHhhCCCCCEEEEecCcc
Confidence 2222223478888888644
No 432
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.36 E-value=0.0026 Score=63.93 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=32.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
..++|+||+|+||||+++.|+..+.+.++.+....|..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 389999999999999999999999887777766666543
No 433
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.35 E-value=0.0017 Score=68.51 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=30.7
Q ss_pred cccccccccccCCceEEEEEecCCCcHHHHHHHHHHhHh
Q 007789 370 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 370 iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
++..+++.+..|+...|+|+|++|+||||+.+.|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344555666677755699999999999999999998654
No 434
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.35 E-value=0.00028 Score=66.48 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=43.6
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|....+.. ..... .+.+.+++|-+++... ...... ..+..+.........-.+++||+|..
T Consensus 82 ~~~~i~Dt~G~~~~~~~-~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~---~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTI-TSSYY-----RGAHGIIVVYDVTDQE-SFNNVK---QWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEECCTTCTTCCCC-SCC-------CCCSEEEECC-CCCSH-HHHHHH---HHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEECCCcHhHHHH-HHHHh-----hcCCEEEEEEECCCHH-HHHHHH---HHHHHHHHhccCCCCEEEEEECccCC
Confidence 35667899986543321 11122 2788888887665432 222222 23333333222223456888999985
Q ss_pred ccch---hhhhHhHHHhCCCEEEEe
Q 007789 546 DDKV---GAALSMVYVSGAPVMFVG 567 (589)
Q Consensus 546 d~k~---G~als~~~~~g~PI~fig 567 (589)
..+. -.+..+....+.|+..+.
T Consensus 152 ~~~~v~~~~~~~~~~~~~~~~~~vS 176 (199)
T 3l0i_B 152 TKKVVDYTTAKEFADSLGIPFLETS 176 (199)
T ss_dssp --CCCCSCC-CHHHHTTTCCBCCCC
T ss_pred ccccCCHHHHHHHHHHcCCeEEEEE
Confidence 3321 123344555566655443
No 435
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.35 E-value=0.0037 Score=67.82 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=62.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
..|+|+|..|||||||++.|.+--... ...| ++..+.. +..
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~~-------~~~T---------------~~~~~~~-----------------~~~ 363 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSVT-------TIPT---------------VGFNVET-----------------VTY 363 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCC-------CCCC---------------SSEEEEE-----------------EES
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-------cCCc---------------cceeEEE-----------------EEe
Confidence 579999999999999999997621000 0000 1111100 011
Q ss_pred cCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCC-CCCccEEEEccc
Q 007789 464 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTKF 542 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~-~~~it~IIlTKl 542 (589)
.++...++||+|...-+.. .... ..+.+.+|+|-+.+........... +..+..... ....-.++++|+
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~-~~~~-----~~~ad~~i~V~D~~~~~s~~~~~~~----~~~~~~~~~~~~~p~ilv~NK~ 433 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPL-WRHY-----YTGTQGLIFVVDCADRDRIDEARQE----LHRIINDREMRDAIILIFANKQ 433 (497)
T ss_dssp SSCEEEEEEECCCGGGSGG-GGGG-----GTTCCEEEEEEETTCGGGHHHHHHH----HHHHHTSGGGTTCEEEEEEECC
T ss_pred CCEEEEEEECCCcHHHHHH-HHHH-----hccCCEEEEEEECcchhHHHHHHHH----HHHHhhhhhcCCCcEEEEEECC
Confidence 3456788999996554322 1111 1378999998777654333322222 222322111 113356899999
Q ss_pred ccc
Q 007789 543 DTI 545 (589)
Q Consensus 543 D~~ 545 (589)
|..
T Consensus 434 Dl~ 436 (497)
T 3lvq_E 434 DLP 436 (497)
T ss_dssp SSS
T ss_pred CCC
Confidence 985
No 436
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.34 E-value=0.0073 Score=63.69 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=60.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 464 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l~ 464 (589)
.|+++|..++|||||++.|. ...+.+ + +.++. +...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi---~------------------~~~~~-----------------~~~~ 58 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSS---D------------------ITMYN-----------------NDKE 58 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEES---S------------------SEEEE-----------------ECSS
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEE---E------------------eeEEE-----------------EecC
Confidence 79999999999999999886 001111 1 10100 1112
Q ss_pred CCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEc-ccc
Q 007789 465 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT-KFD 543 (589)
Q Consensus 465 ~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlT-KlD 543 (589)
+....++||+|-..-...+.+.+. ..|.++||-+ ..|..+... .....+. ... ...-.++++ |+|
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~~~~------~aD~ailVvd-~~g~~~qt~--e~~~~~~---~~~--i~~~ivvvNNK~D 124 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLITALN------ISDIAVLCIP-PQGLDAHTG--ECIIALD---LLG--FKHGIIALTRSDS 124 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHHHHH------TCSEEEEEEC-TTCCCHHHH--HHHHHHH---HTT--CCEEEEEECCGGG
T ss_pred CeEEEEEECCChHHHHHHHHHHHH------HCCEEEEEEc-CCCCcHHHH--HHHHHHH---HcC--CCeEEEEEEeccC
Confidence 445788999997665445555554 7888887766 777665432 1112222 111 122368899 999
Q ss_pred c
Q 007789 544 T 544 (589)
Q Consensus 544 ~ 544 (589)
.
T Consensus 125 l 125 (370)
T 2elf_A 125 T 125 (370)
T ss_dssp S
T ss_pred C
Confidence 8
No 437
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.33 E-value=0.0084 Score=75.30 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=34.4
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
+++|+ ++.|+||+|+||||+...++.-....++++.+....
T Consensus 1424 i~~g~--~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp EETTS--EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 45677 999999999999999999988777778888886543
No 438
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.30 E-value=0.0031 Score=58.37 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=27.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 417 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~ 417 (589)
+|+|+|+.||||||+++.|+..+...+..+.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 799999999999999999999877555445444
No 439
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.30 E-value=0.0095 Score=60.84 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=64.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhcc
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 463 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~l 463 (589)
.-|+|+|..||||||+++.+.+-..+... + .+....++.+..... .
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-------~-----------~~~~Ti~~~~~~~~~----------------~ 49 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDT-------R-----------RLGATIDVEHSHLRF----------------L 49 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGG-------G-----------GCCCCCSEEEEEEEE----------------T
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc-------c-----------CcCCccceEEEEEEe----------------C
Confidence 36899999999999999998753211100 0 000011111110000 0
Q ss_pred cCCCccccccCccccccH----HHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEE
Q 007789 464 NGSDVVLVDTAGRMQDNE----PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 539 (589)
Q Consensus 464 ~~~d~vliDTSGg~qqr~----~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIl 539 (589)
.+....++||+|...-.. .+..... .+++.+++|-+++... .......+...+..+.... +...-.+++
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~-----~~ad~vi~V~D~t~~~-s~~~l~~~~~~l~~l~~~~-~~~piilv~ 122 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIF-----QMVQVLIHVFDVESTE-VLKDIEIFAKALKQLRKYS-PDAKIFVLL 122 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHH-----TTCSEEEEEEETTCSC-HHHHHHHHHHHHHHHHHHC-TTCEEEEEE
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHh-----ccCCEEEEEEECCChh-hHHHHHHHHHHHHHHHHhC-CCCeEEEEE
Confidence 134567889998654311 1222222 3789999887776543 2222333334444443221 123456889
Q ss_pred ccccccc
Q 007789 540 TKFDTID 546 (589)
Q Consensus 540 TKlD~~d 546 (589)
+|+|...
T Consensus 123 NK~Dl~~ 129 (307)
T 3r7w_A 123 HKMDLVQ 129 (307)
T ss_dssp ECGGGSC
T ss_pred ecccccc
Confidence 9999874
No 440
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.29 E-value=0.0037 Score=59.69 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=31.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
.+.|+||+|+||||+++.|+..+...+..+.+..+..
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 8999999999999999999998877777776666544
No 441
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.27 E-value=0.0018 Score=60.90 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHh
Q 007789 381 RKPYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 381 Gep~iI~LVGpNGvGKTTlLakLAgl 406 (589)
++|.+|+|+|++||||||+.+.|+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45779999999999999999999874
No 442
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.25 E-value=0.0027 Score=59.07 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
|.+|.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4599999999999999999999765
No 443
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.23 E-value=0.00073 Score=63.71 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHH
Q 007789 382 KPYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 382 ep~iI~LVGpNGvGKTTlLakLAg 405 (589)
++..|+|+|..||||||+++.+.+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 455799999999999999988864
No 444
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.22 E-value=0.0026 Score=59.05 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
+|+|+|++||||||+.+.|+..+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999755
No 445
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.20 E-value=0.013 Score=56.28 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=49.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcc--cccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHH
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA--CDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 457 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~--~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~a 457 (589)
.|. ++.++|+.|+||||.+-.++.-+...+.+|++.. .|+ |.+ ..++. .++++......... . .++
T Consensus 7 ~g~--i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~-~~~i~---s~~g~~~~a~~~~~-~----~~i 74 (191)
T 1xx6_A 7 HGW--VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYS-KEDVV---SHMGEKEQAVAIKN-S----REI 74 (191)
T ss_dssp CCE--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEE---CTTSCEEECEEESS-S----THH
T ss_pred CCE--EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cch-HHHHH---hhcCCceeeEeeCC-H----HHH
Confidence 466 9999999999999999999988877888898874 554 433 12222 22232211111111 1 133
Q ss_pred HHHhcccCCCccccccCccc
Q 007789 458 IQEATRNGSDVVLVDTAGRM 477 (589)
Q Consensus 458 l~~a~l~~~d~vliDTSGg~ 477 (589)
++.+. ..+|+++||.+...
T Consensus 75 ~~~~~-~~~dvViIDEaqfl 93 (191)
T 1xx6_A 75 LKYFE-EDTEVIAIDEVQFF 93 (191)
T ss_dssp HHHCC-TTCSEEEECSGGGS
T ss_pred HHHHh-ccCCEEEEECCCCC
Confidence 44332 25899999997665
No 446
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.15 E-value=0.003 Score=58.55 Aligned_cols=27 Identities=37% Similarity=0.399 Sum_probs=23.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCC
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHK 411 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~ 411 (589)
+|+|+|++||||||+++.|+..+...+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999998776443
No 447
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=96.15 E-value=0.013 Score=57.49 Aligned_cols=165 Identities=14% Similarity=0.169 Sum_probs=84.4
Q ss_pred eEEEEEec-CCCcHHHHHHHHHHhHhhCCcEEEEc-----ccccCccchh-hhh-Hhhh------hccccceecc-----
Q 007789 384 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMA-----ACDTFRSGAV-EQL-RTHA------RRLQVPIFEK----- 444 (589)
Q Consensus 384 ~iI~LVGp-NGvGKTTlLakLAgll~~~~GkV~l~-----~~Dt~Rigav-eQL-~~~~------~~l~v~l~~~----- 444 (589)
..+.|.|. +|+||||....|+..+...+.+|... +++...-+.. .+. .... +.++.-.+..
T Consensus 5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~p~sp~ 84 (228)
T 3of5_A 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESILNAYKHKFTAAEINLISFNQAVAPH 84 (228)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHHHHTTTSSCHHHHCSEEESSSSCHH
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHHHhcCCCCChhhEEEEEECCCCCHH
Confidence 37889998 89999999999999999888888764 2321101100 000 0000 1111101110
Q ss_pred ------CCCCCHHHHHHHHHHHhcccCCCccccccCccccc-------cHHHHHHHHhhhhhcCCCEEEEEecCCCCCCH
Q 007789 445 ------GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQD-------NEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 511 (589)
Q Consensus 445 ------~~~~d~~~ia~~al~~a~l~~~d~vliDTSGg~qq-------r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 511 (589)
+...+. +.+.+.++..-...+|+++||++||... ...+++.+ +-.+||. -.+-.| .
T Consensus 85 ~aa~~~~~~i~~-~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~adla~~l-------~~pviLV-~~~~~~--~ 153 (228)
T 3of5_A 85 IIAAKTKVDISI-ENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLDLIKAL-------QIPVLLV-SAIKVG--C 153 (228)
T ss_dssp HHHHHTTCCCCH-HHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHHHHHHH-------TCCEEEE-EECSTT--H
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHHHccCCEEEEECCCccccccccchhHHHHHHHc-------CCCEEEE-EcCCcc--h
Confidence 011122 2233444431135789999999887642 23444433 4445555 444332 2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEEccccccccchh-hhhHhHHHhCCCEE
Q 007789 512 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVG-AALSMVYVSGAPVM 564 (589)
Q Consensus 512 ~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~d~k~G-~als~~~~~g~PI~ 564 (589)
.+... ..+..+.. ....+.|+|+++++.-..... ..-.+...++.|+.
T Consensus 154 i~~~~---~~~~~l~~--~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvL 202 (228)
T 3of5_A 154 INHTL---LTINELNR--HNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCS 202 (228)
T ss_dssp HHHHH---HHHHHHHH--TTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCS
T ss_pred HHHHH---HHHHHHHh--CCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEE
Confidence 22211 12222222 234678999999986322222 33344455788864
No 448
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.13 E-value=0.0033 Score=58.28 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
|.+|+|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999998754
No 449
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.11 E-value=0.0029 Score=58.32 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
.+|.|+|++||||||+.+.|+..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999998653
No 450
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.07 E-value=0.0049 Score=58.05 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=26.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEEE
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM 415 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~ 415 (589)
.+|+|+|+.||||||+++.|+..+...+ .|.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~ 35 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVY 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEE
Confidence 3899999999999999999998776544 553
No 451
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.07 E-value=0.0033 Score=58.84 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHh
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
+|+|+|+.||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 452
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.07 E-value=0.0049 Score=57.48 Aligned_cols=32 Identities=31% Similarity=0.598 Sum_probs=26.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEE
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 416 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l 416 (589)
+|+|.|+.||||||+++.|+..+...+..|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 68999999999999999999988766666643
No 453
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.05 E-value=0.045 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
.+.|.||+|+||||+++.|+..+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 79999999999999999999865
No 454
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.98 E-value=0.0049 Score=60.84 Aligned_cols=44 Identities=27% Similarity=0.402 Sum_probs=30.4
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhC-----CcEEEEcccc-cCc
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACD-TFR 423 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~-----~GkV~l~~~D-t~R 423 (589)
.+.|.+|+|+|+.||||||+.+.|+..+... +.++.+...| .+|
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4567899999999999999999998754321 3345554444 444
No 455
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.97 E-value=0.0058 Score=57.85 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=26.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEE
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 414 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV 414 (589)
.+|+|+|+.||||||+.+.|+..+...+..|
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4999999999999999999998776555555
No 456
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.95 E-value=0.0041 Score=59.63 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAY 405 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAg 405 (589)
|.+|+|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999987
No 457
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.93 E-value=0.0036 Score=56.56 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHH
Q 007789 385 VVVFVGVNGVGKSTNLAKV 403 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakL 403 (589)
+|+|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999988
No 458
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.93 E-value=0.0053 Score=55.85 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQ 409 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~ 409 (589)
+..+.|+||.|+||||+++.++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999987654
No 459
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.92 E-value=0.0046 Score=57.67 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll 407 (589)
.+|+|+|+.||||||+.+.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999999999765
No 460
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.91 E-value=0.005 Score=57.00 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
|.+|+|+|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999998765
No 461
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.91 E-value=0.0051 Score=64.71 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=29.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 417 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~ 417 (589)
.++|+|++|+||||+++.|+..+.+.+++|.+.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 689999999999999999999888888888775
No 462
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.89 E-value=0.0048 Score=57.68 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll 407 (589)
.+|+|+|+.||||||+.+.|+..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999999999866
No 463
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=95.89 E-value=0.0034 Score=67.57 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=50.3
Q ss_pred CccccccCcccc------ccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEc
Q 007789 467 DVVLVDTAGRMQ------DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 540 (589)
Q Consensus 467 d~vliDTSGg~q------qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlT 540 (589)
.+.++||+|-.. .+..-++... ...+.+|+|-++ +..... . ..+..+.+.. ..-.+++|
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l-----~~aD~vllVvD~--~~~~~~--~---~~l~~l~~~~---~piIvV~N 148 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVF-----YRADCGILVTDS--APTPYE--D---DVVNLFKEME---IPFVVVVN 148 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHH-----TSCSEEEEECSS--SCCHHH--H---HHHHHHHHTT---CCEEEECC
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHH-----hcCCEEEEEEeC--CChHHH--H---HHHHHHHhcC---CCEEEEEe
Confidence 456889987542 1222233333 278888888776 444332 2 2333333322 23468999
Q ss_pred cccccccchh-hhhHhHHHhCCCEEEEe--cCCCcccc
Q 007789 541 KFDTIDDKVG-AALSMVYVSGAPVMFVG--CGQSYTDL 575 (589)
Q Consensus 541 KlD~~d~k~G-~als~~~~~g~PI~fig--~Gq~v~DL 575 (589)
|+|..+...- .+-.+....+.|+.++. +|+++.+|
T Consensus 149 K~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 149 KIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDI 186 (423)
T ss_dssp CCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTH
T ss_pred CcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 9998754332 12222233466766665 46666544
No 464
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.88 E-value=0.028 Score=59.28 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
.++|||++|||||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 465
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.84 E-value=0.0048 Score=61.34 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
+|+|+||+||||||+.+.||..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 78999999999999999999865
No 466
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.83 E-value=0.0022 Score=70.45 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=28.8
Q ss_pred ccccccccccccCCceEEEEEecCCCcHHHHHHHHHHh
Q 007789 369 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 369 ~iL~~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgl 406 (589)
..++++++.+.+| +.+|+|+||+||||+|..|.++
T Consensus 49 ~~~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 49 ATITQLELELGGG---FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TTBSCEEEECCCS---EEEEEESHHHHHHHHTHHHHHH
T ss_pred cceeeEEEecCCC---eEEEEcCCCCCHHHHHHHHHHH
Confidence 3456677766554 8999999999999999999876
No 467
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=95.83 E-value=0.034 Score=62.41 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=56.0
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|-..-.....+.|. ..|.++||-+++.|..+... ..+..++ ... ..-.+++||+|..
T Consensus 71 ~~l~liDTPGh~dF~~ev~~~l~------~aD~aILVVDa~~gv~~qt~-~~~~~~~----~~~---ipiIvViNKiDl~ 136 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSRSLA------ACEGALLVVDAGQGVEAQTL-ANCYTAM----EMD---LEVVPVLNKIDLP 136 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHH------HCSEEEEEEETTTCCCTHHH-HHHHHHH----HTT---CEEEEEEECTTST
T ss_pred EEEEEEECCCchHHHHHHHHHHH------HCCEEEEEEECCCCCCHHHH-HHHHHHH----HCC---CCEEEeeeccCcc
Confidence 45678999998766556666665 56888888889888876543 2222222 111 2356899999987
Q ss_pred ccchhh-hhHhHHHhCCC---EEEEe--cCCCcc
Q 007789 546 DDKVGA-ALSMVYVSGAP---VMFVG--CGQSYT 573 (589)
Q Consensus 546 d~k~G~-als~~~~~g~P---I~fig--~Gq~v~ 573 (589)
++..-. .-.+....+.+ +.++. +|+++.
T Consensus 137 ~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~ 170 (599)
T 3cb4_D 137 AADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQ 170 (599)
T ss_dssp TCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHH
T ss_pred cccHHHHHHHHHHHhCCCcceEEEeecccCCCch
Confidence 543322 22333444553 55554 354443
No 468
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.82 E-value=0.0074 Score=57.06 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=25.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhHhhCCcEE
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 414 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll~~~~GkV 414 (589)
.+|+|+|+.||||||+.+.|+..+......+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3999999999999999999998776544444
No 469
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.82 E-value=0.0052 Score=57.04 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
+|+|+|+.||||||+.+.|+..+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999765
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.80 E-value=0.0057 Score=59.65 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
+.+|+|+|++||||||+.+.|+..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3499999999999999999999855
No 471
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.80 E-value=0.0043 Score=57.35 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
+|+|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999765
No 472
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.79 E-value=0.024 Score=62.88 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=82.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhH----hhhhcc------ccceeccCCCCCHHHHH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR----THARRL------QVPIFEKGYEKDPAIVA 454 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~----~~~~~l------~v~l~~~~~~~d~~~ia 454 (589)
-|+|||.-++|||||.-.|.++- |.| .|+|.|+.-. ++.+.+ ++.+..
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~t----G~i-------~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s----------- 90 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFG----GAI-------QMAGSVKARKAARHATSDWMAMERERGISVTT----------- 90 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT----TCH-------HHHHHHHHC--------------------CTT-----------
T ss_pred eEEEEeCCCCCHHHHHHHHHHhc----Ccc-------cccceeecCccccccccCChHHHHHCCCcEee-----------
Confidence 89999999999999999986532 211 1222222111 011111 111100
Q ss_pred HHHHHHhcccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007789 455 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 534 (589)
Q Consensus 455 ~~al~~a~l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~i 534 (589)
+.-.+...++..-+|||+|-.-=-...-|+|. --|-.++|-++..|..+... +.+..+. ... ..
T Consensus 91 --~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~------~~DgAvlVvda~~GV~~qT~-~v~~~a~----~~~---lp 154 (548)
T 3vqt_A 91 --SVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLT------AVDSALVVIDAAKGVEAQTR-KLMDVCR----MRA---TP 154 (548)
T ss_dssp --TEEEEEETTEEEEEECCCCGGGCSHHHHHHHH------SCSEEEEEEETTTBSCHHHH-HHHHHHH----HTT---CC
T ss_pred --ceEEEEECCEEEEEEeCCCcHHHHHHHHHHHH------hcCceEEEeecCCCcccccH-HHHHHHH----HhC---Cc
Confidence 00011234566789999998888888889998 66777777889999998653 3332222 221 33
Q ss_pred cEEEEccccccccchhhhhHh-HHHhCCCE
Q 007789 535 DGILLTKFDTIDDKVGAALSM-VYVSGAPV 563 (589)
Q Consensus 535 t~IIlTKlD~~d~k~G~als~-~~~~g~PI 563 (589)
..++|+|+|...+..-.++.- ...++..+
T Consensus 155 ~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~ 184 (548)
T 3vqt_A 155 VMTFVNKMDREALHPLDVMADIEQHLQIEC 184 (548)
T ss_dssp EEEEEECTTSCCCCHHHHHHHHHHHHTSEE
T ss_pred eEEEEecccchhcchhHhhhhhhhhcCCce
Confidence 568999999876665554443 34445443
No 473
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.78 E-value=0.0077 Score=64.32 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=35.8
Q ss_pred ccccccccCCceEEEEEecCCCcHHHHHHHHHHhHhhCC--cEEEEcccc
Q 007789 373 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK--VSVMMAACD 420 (589)
Q Consensus 373 ~Is~~i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~--GkV~l~~~D 420 (589)
|+.+.+.+|+ .++|+||+|+||||+++.|+.++..+. -.+.+.+++
T Consensus 166 D~~~pi~rGQ--r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG 213 (422)
T 3ice_A 166 DLASPIGRGQ--RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 213 (422)
T ss_dssp HHHSCCBTTC--EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES
T ss_pred eeeeeecCCc--EEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec
Confidence 4566777899 999999999999999999999876532 234455555
No 474
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.77 E-value=0.0035 Score=58.20 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhH
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgll 407 (589)
+.|+|+|++|||||||++.|++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 475
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.76 E-value=0.0064 Score=62.25 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhC
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQH 410 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~ 410 (589)
+..++|+||+|+||||+++.++..+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3489999999999999999999988765
No 476
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.75 E-value=0.0072 Score=56.02 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=26.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEE
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM 415 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~ 415 (589)
+|+|+|+.||||||+.+.|+..+...+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6899999999999999999998865554443
No 477
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.75 E-value=0.0054 Score=60.83 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
|.+|+|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999999765
No 478
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.73 E-value=0.012 Score=66.07 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=40.0
Q ss_pred CccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 467 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 467 d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
...++||+|-..-.....+.+ ...|.++||-+++.|..+... +.+..+.... ..-.+++||+|..
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~------~~aD~aILVvDa~~Gv~~qT~-----e~l~~l~~~~---vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGG------ALADLAILIVDINEGFKPQTQ-----EALNILRMYR---TPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSS------BSCSEEEEEEETTTCCCHHHH-----HHHHHHHHTT---CCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHHHHHHHHH------hhCCEEEEEEECCCCccHhHH-----HHHHHHHHcC---CeEEEEecccccc
Confidence 467899998654322111111 368899999889998876542 2333333222 2357999999986
No 479
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.72 E-value=0.0031 Score=64.26 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=28.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccC
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 422 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~ 422 (589)
+.+|+|.|+.||||||+.+.|+..+...+.++.+...|-|
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4599999999999999999999876544445666666653
No 480
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=95.70 E-value=0.012 Score=63.08 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgl 406 (589)
..|+++|..|+|||||++.|.+.
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 481
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.70 E-value=0.007 Score=57.18 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.1
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll 407 (589)
...|.+|+|+|+.||||||+.+.|+..+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3345699999999999999999999766
No 482
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=95.67 E-value=0.0022 Score=71.85 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
...|+|||..++|||||++.|.+..
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFEL 201 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3479999999999999999997643
No 483
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.66 E-value=0.03 Score=69.58 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=35.2
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
+.+|+ ++.|.|++|+||||++..+|......+++|++....
T Consensus 729 l~~G~--lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 729 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp EETTS--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred cCCCc--eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 56788 999999999999999999999887778888776543
No 484
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.64 E-value=0.0065 Score=56.28 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
+|+|+|++||||||+++.|+..+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998655
No 485
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.64 E-value=0.0059 Score=62.25 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=29.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 420 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~D 420 (589)
.+.|.||+|+||||+++.|+..+.+.+..+....+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 689999999999999999999887766666555443
No 486
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.63 E-value=0.026 Score=63.34 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=46.0
Q ss_pred CCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEcccccc
Q 007789 466 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 545 (589)
Q Consensus 466 ~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKlD~~ 545 (589)
+...++||+|-..-.....+.|. ..|.+|||-+++.|..+... ..+..++ ... ..-.+++||+|..
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~------~aD~aILVVDa~~gv~~qt~-~~~~~a~----~~~---ipiIvviNKiDl~ 138 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALA------ACEGALLLIDASQGIEAQTV-ANFWKAV----EQD---LVIIPVINKIDLP 138 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHH------TCSEEEEEEETTTBCCHHHH-HHHHHHH----HTT---CEEEEEEECTTST
T ss_pred EEEEEEECCCcHhHHHHHHHHHH------hCCEEEEEEECCCCccHHHH-HHHHHHH----HCC---CCEEEEEeccCcc
Confidence 45668999998776666666665 67888888889999876543 2222222 111 2356899999986
Q ss_pred ccc
Q 007789 546 DDK 548 (589)
Q Consensus 546 d~k 548 (589)
...
T Consensus 139 ~a~ 141 (600)
T 2ywe_A 139 SAD 141 (600)
T ss_dssp TCC
T ss_pred ccC
Confidence 544
No 487
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.61 E-value=0.055 Score=54.13 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=23.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhC
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQH 410 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~ 410 (589)
.+.|+||+|+||||+++.|+..+...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 79999999999999999999877553
No 488
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=95.59 E-value=0.0046 Score=68.57 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=63.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCccchhhhhHhhhhccccceeccCCCCCHHHHHHHHHHHhc
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 462 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~RigaveQL~~~~~~l~v~l~~~~~~~d~~~ia~~al~~a~ 462 (589)
|..|+|+|..|+|||||++.|.+--..... . +.+. ..++...+. .
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~----------~-~giT------~~i~~~~v~--~---------------- 48 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAME----------A-GGIT------QHIGAFLVS--L---------------- 48 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSS----------S-CCBC------CCTTSCCBC--S----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccc----------C-Ccee------EEEeEEEEE--e----------------
Confidence 458999999999999999999863321110 0 0000 000000000 0
Q ss_pred ccCCCccccccCccccccHHHHHHHHhhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccEEEEccc
Q 007789 463 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 542 (589)
Q Consensus 463 l~~~d~vliDTSGg~qqr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~l~~l~~~~~~~~it~IIlTKl 542 (589)
..+....++||+|...-.....+.+ ...|.++||-+++.|..+... +.+..+..... .-.+++||+
T Consensus 49 ~~g~~i~~iDTPGhe~f~~~~~~~~------~~aD~vILVVDa~dg~~~qt~-----e~l~~~~~~~v---PiIVViNKi 114 (537)
T 3izy_P 49 PSGEKITFLDTPGHAAFSAMRARGT------QVTDIVILVVAADDGVMKQTV-----ESIQHAKDAHV---PIVLAINKC 114 (537)
T ss_dssp SCSSCCBCEECSSSCCTTTSBBSSS------BSBSSCEEECBSSSCCCHHHH-----HHHHHHHTTTC---CEEECCBSG
T ss_pred CCCCEEEEEECCChHHHHHHHHHHH------ccCCEEEEEEECCCCccHHHH-----HHHHHHHHcCC---cEEEEEecc
Confidence 0123467899998544222111111 367888888888888776543 33333333221 246889999
Q ss_pred cccc
Q 007789 543 DTID 546 (589)
Q Consensus 543 D~~d 546 (589)
|..+
T Consensus 115 Dl~~ 118 (537)
T 3izy_P 115 DKAE 118 (537)
T ss_dssp GGTT
T ss_pred cccc
Confidence 9863
No 489
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.59 E-value=0.0068 Score=59.58 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=26.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEccccc
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 421 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt 421 (589)
-++|+||+|+||||+++.|++.+... -+.+.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 58899999999999999999976421 344544443
No 490
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.56 E-value=0.016 Score=63.99 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=33.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEcccccCc
Q 007789 381 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 423 (589)
Q Consensus 381 Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~~~Dt~R 423 (589)
..|.+|.|+|++|+||||+.++|+..+......+.+...|.+|
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 3466999999999999999999998776555455555556555
No 491
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.55 E-value=0.0071 Score=56.81 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
+|+|+|+.||||||+++.|+..+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999876
No 492
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.51 E-value=0.0066 Score=58.40 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhHh
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWLL 408 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll~ 408 (589)
|..|+|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44899999999999999999997663
No 493
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.49 E-value=0.046 Score=56.89 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.1
Q ss_pred cccCCceEEEEEecCCCcHHHHHHHHHHh
Q 007789 378 KEQRKPYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 378 i~~Gep~iI~LVGpNGvGKTTlLakLAgl 406 (589)
+.+|. ++.|.||+|+||||++..++..
T Consensus 120 i~~gs--viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASG--MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESE--EEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCc--EEEEEcCCCCCHHHHHHHHHHh
Confidence 34566 8899999999999999999875
No 494
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.48 E-value=0.011 Score=57.57 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=30.7
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHhHhhCCcEEEEc
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 417 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgll~~~~GkV~l~ 417 (589)
.|. +|+|.|+.||||||.++.|+.++...+..|.+.
T Consensus 5 ~g~--~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGL--FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCE--EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred Cce--EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 355 999999999999999999999998877777543
No 495
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.47 E-value=0.0049 Score=56.91 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=18.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
|.+|+|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4599999999999999999998654
No 496
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.46 E-value=0.0066 Score=58.11 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhH
Q 007789 385 VVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 385 iI~LVGpNGvGKTTlLakLAgll 407 (589)
.|+|+||+||||||+++.|..-.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987543
No 497
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.46 E-value=0.015 Score=62.95 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 007789 384 YVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 384 ~iI~LVGpNGvGKTTlLakLAgl 406 (589)
..|+++|..++|||||++.|.+.
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 498
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.42 E-value=0.014 Score=56.97 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=29.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHhHhhCCc-EEEE
Q 007789 381 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMM 416 (589)
Q Consensus 381 Gep~iI~LVGpNGvGKTTlLakLAgll~~~~G-kV~l 416 (589)
|. +|+|.|+.||||||.++.|+.++...+. .|.+
T Consensus 3 g~--~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~ 37 (213)
T 4tmk_A 3 SK--YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF 37 (213)
T ss_dssp CC--EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred Ce--EEEEECCCCCCHHHHHHHHHHHHHHcCCCccee
Confidence 55 9999999999999999999999988765 5543
No 499
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.42 E-value=0.009 Score=57.36 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHhH
Q 007789 383 PYVVVFVGVNGVGKSTNLAKVAYWL 407 (589)
Q Consensus 383 p~iI~LVGpNGvGKTTlLakLAgll 407 (589)
+..|+|+|+.||||||+.+.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3489999999999999999999866
No 500
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.41 E-value=0.0063 Score=65.00 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.8
Q ss_pred cCCceEEEEEecCCCcHHHHHHHHHHh
Q 007789 380 QRKPYVVVFVGVNGVGKSTNLAKVAYW 406 (589)
Q Consensus 380 ~Gep~iI~LVGpNGvGKTTlLakLAgl 406 (589)
.+. .++|||+||||||||++.|++.
T Consensus 21 ~~~--kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 21 TSL--KIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SCC--CEEEECCSSSSHHHHHHHHHC-
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHCC
Confidence 444 8999999999999999999986
Done!