BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007790
(589 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 72 FRETPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
F TPLHL V DV+ + +GW PL A R + +I +LLK
Sbjct: 46 FGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLH+A + DV+ + G++PL +A + ++DI +LLK
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA R DV+ Q+ G P A+ N DIA +L K
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA R DV+ ++ G+ PL A + +I +LLK
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA R DV+ ++ G+ PL A + +I +LLK
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA R DV+ ++ G+ PL A R + +I +LLK
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA DV+ +++ G PL A R + +I +LLK
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK 101
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 72 FRETPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
+ +TPLHLA R+ DV+ + +G PL A R + +I +LLK
Sbjct: 46 YGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA +L DV+ ++ G PL A R + +I +LLK
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA + DV+ ++ GW PL A + +I +LLK
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK 101
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA DV+ Q+A G PL A R + +I +LLK
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA DV+ + AGW PL A +I +LLK
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 28/119 (23%)
Query: 9 EDYSHSPVHYAIVLGDHTTLTRIISTLPRLAADPSKIHTESDSLSQERVADQIASVLDRR 68
+ Y +P+H A +G I+ L R AD + + T
Sbjct: 32 DHYGRTPLHMAAAVGH----LEIVEVLLRNGADVNAVDTNG------------------- 68
Query: 69 DVPFRETPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA L DV+ ++A G PL A + +I +LLK
Sbjct: 69 -----TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA R DV+ Q+ G P A+ + DIA +L K
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA R DV+ ++ G+ PL A + +I +LLK
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA R DV+ ++ G+ PL A + +I +LLK
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA R DV+ ++ G+ PL A + +I +LLK
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 75 TPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLK 127
TPLHLA R DV+ ++ G+ PL A + +I +LLK
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 74 ETPLHLAVRLNDXXXXXXXXXXXXDVSLQNAAGWNPLQEAVCRRNSDIALILLKLHHRS 132
ET LH+A D D ++++ AGW PL EA + + ++ L L H++
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC--NHGHLKVVELLLQHKA 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,467,389
Number of Sequences: 62578
Number of extensions: 533198
Number of successful extensions: 1619
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 40
length of query: 589
length of database: 14,973,337
effective HSP length: 104
effective length of query: 485
effective length of database: 8,465,225
effective search space: 4105634125
effective search space used: 4105634125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)