Query 007791
Match_columns 589
No_of_seqs 42 out of 44
Neff 2.1
Searched_HMMs 46136
Date Thu Mar 28 15:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07058 Myosin_HC-like: Myosi 100.0 4E-156 8E-161 1154.0 31.7 343 181-564 1-351 (351)
2 TIGR02169 SMC_prok_A chromosom 97.9 0.064 1.4E-06 59.0 33.0 52 25-76 674-725 (1164)
3 TIGR02168 SMC_prok_B chromosom 97.8 0.1 2.2E-06 57.0 33.1 30 23-52 668-697 (1179)
4 TIGR02169 SMC_prok_A chromosom 97.6 0.14 3E-06 56.5 30.6 32 23-54 679-710 (1164)
5 TIGR02168 SMC_prok_B chromosom 97.6 0.046 9.9E-07 59.6 26.3 31 23-53 675-705 (1179)
6 PRK11637 AmiB activator; Provi 97.6 0.018 3.8E-07 59.2 22.0 135 20-163 42-181 (428)
7 PRK03918 chromosome segregatio 97.3 0.39 8.5E-06 52.6 30.9 125 129-266 301-425 (880)
8 PF07888 CALCOCO1: Calcium bin 97.1 0.32 6.9E-06 53.7 26.0 120 182-311 250-373 (546)
9 PRK02224 chromosome segregatio 96.8 1.2 2.5E-05 49.4 29.9 43 130-172 407-449 (880)
10 COG1196 Smc Chromosome segrega 96.7 0.96 2.1E-05 52.6 26.3 26 182-207 392-417 (1163)
11 PRK02224 chromosome segregatio 96.6 1.5 3.3E-05 48.5 29.6 98 239-337 405-523 (880)
12 PHA02562 46 endonuclease subun 96.3 1.7 3.7E-05 45.3 27.3 24 241-264 381-404 (562)
13 PRK11637 AmiB activator; Provi 96.3 1 2.2E-05 46.7 21.4 80 24-103 53-132 (428)
14 COG1196 Smc Chromosome segrega 96.2 2 4.2E-05 50.2 25.4 82 186-270 834-915 (1163)
15 PF15619 Lebercilin: Ciliary p 96.1 1.5 3.2E-05 42.5 20.5 95 25-173 12-106 (194)
16 KOG0963 Transcription factor/C 95.7 4.9 0.00011 45.5 27.0 336 4-375 84-475 (629)
17 PF12128 DUF3584: Protein of u 95.1 9.6 0.00021 45.0 31.6 63 29-98 604-666 (1201)
18 PF10174 Cast: RIM-binding pro 95.0 9 0.0002 44.2 27.3 170 152-341 227-424 (775)
19 KOG0161 Myosin class II heavy 94.9 12 0.00026 47.1 26.5 284 21-315 1086-1399(1930)
20 PRK03918 chromosome segregatio 94.5 9.6 0.00021 42.2 32.3 28 125-152 304-331 (880)
21 PF09755 DUF2046: Uncharacteri 94.4 7.8 0.00017 40.7 21.4 96 216-319 157-253 (310)
22 TIGR00606 rad50 rad50. This fa 94.1 17 0.00036 43.3 29.8 148 59-206 743-907 (1311)
23 PF09726 Macoilin: Transmembra 93.5 6.3 0.00014 44.7 19.0 92 129-228 546-656 (697)
24 KOG0161 Myosin class II heavy 93.3 30 0.00065 43.8 30.2 208 33-265 923-1144(1930)
25 KOG0977 Nuclear envelope prote 93.3 7.2 0.00016 43.5 18.5 30 166-204 192-221 (546)
26 PF12128 DUF3584: Protein of u 92.8 26 0.00056 41.6 29.8 151 19-176 240-393 (1201)
27 PF05667 DUF812: Protein of un 92.5 21 0.00046 40.0 22.6 200 24-251 327-590 (594)
28 KOG0250 DNA repair protein RAD 92.5 27 0.00058 42.0 22.5 72 24-96 654-725 (1074)
29 TIGR00606 rad50 rad50. This fa 92.2 31 0.00067 41.2 30.6 38 194-231 970-1007(1311)
30 COG1579 Zn-ribbon protein, pos 91.6 4.5 9.8E-05 40.8 13.4 50 23-72 15-64 (239)
31 PF00038 Filament: Intermediat 90.7 18 0.00038 35.5 21.7 27 25-51 54-80 (312)
32 KOG0612 Rho-associated, coiled 90.7 26 0.00057 42.7 20.1 110 97-237 449-558 (1317)
33 PF10174 Cast: RIM-binding pro 90.6 39 0.00084 39.3 26.2 80 25-104 190-286 (775)
34 PF05557 MAD: Mitotic checkpoi 90.6 0.076 1.7E-06 58.3 0.0 129 130-266 173-301 (722)
35 PF07888 CALCOCO1: Calcium bin 90.4 35 0.00076 38.4 21.1 91 133-226 141-231 (546)
36 KOG0996 Structural maintenance 90.4 52 0.0011 40.3 23.1 80 184-266 490-569 (1293)
37 PRK09039 hypothetical protein; 90.1 25 0.00055 36.4 17.4 48 30-77 44-91 (343)
38 TIGR02680 conserved hypothetic 89.4 59 0.0013 39.5 25.9 107 189-336 884-990 (1353)
39 PF09789 DUF2353: Uncharacteri 88.4 5.4 0.00012 41.8 11.4 32 25-56 79-110 (319)
40 COG4942 Membrane-bound metallo 87.2 51 0.0011 36.1 22.3 100 24-136 44-143 (420)
41 KOG0995 Centromere-associated 86.9 62 0.0013 36.9 22.8 225 19-270 288-534 (581)
42 PF09789 DUF2353: Uncharacteri 86.9 38 0.00082 35.8 16.3 136 132-318 83-219 (319)
43 COG1579 Zn-ribbon protein, pos 86.7 20 0.00044 36.3 13.9 54 211-265 62-115 (239)
44 PF00038 Filament: Intermediat 86.6 34 0.00074 33.6 21.3 125 124-250 43-180 (312)
45 PRK04863 mukB cell division pr 86.0 1E+02 0.0022 38.4 25.7 101 215-316 411-527 (1486)
46 KOG0977 Nuclear envelope prote 85.9 39 0.00084 38.0 16.6 95 22-116 89-190 (546)
47 PRK10884 SH3 domain-containing 84.8 6.2 0.00013 38.6 9.0 75 122-209 87-161 (206)
48 KOG0250 DNA repair protein RAD 84.7 54 0.0012 39.6 17.8 187 23-212 666-896 (1074)
49 PHA02562 46 endonuclease subun 84.0 60 0.0013 34.1 23.4 112 130-258 294-405 (562)
50 KOG4674 Uncharacterized conser 83.9 1.4E+02 0.003 38.2 22.8 64 47-113 1315-1378(1822)
51 TIGR03185 DNA_S_dndD DNA sulfu 83.7 76 0.0017 35.1 28.4 45 43-87 213-257 (650)
52 PF06818 Fez1: Fez1; InterPro 83.2 53 0.0011 32.9 16.9 96 26-147 11-106 (202)
53 COG0419 SbcC ATPase involved i 83.1 95 0.0021 35.7 26.3 25 284-308 565-592 (908)
54 TIGR02680 conserved hypothetic 83.0 1.2E+02 0.0026 36.9 23.9 74 189-269 923-996 (1353)
55 PRK01156 chromosome segregatio 82.0 97 0.0021 35.1 23.7 31 130-160 524-554 (895)
56 KOG0933 Structural maintenance 81.7 1.4E+02 0.0029 36.6 20.6 128 133-260 827-979 (1174)
57 PF15619 Lebercilin: Ciliary p 81.5 55 0.0012 31.9 19.9 172 130-316 14-192 (194)
58 PF05667 DUF812: Protein of un 80.7 1.1E+02 0.0023 34.7 19.7 79 212-311 444-528 (594)
59 PF05266 DUF724: Protein of un 80.0 9.3 0.0002 37.0 8.2 50 214-273 123-172 (190)
60 PF10146 zf-C4H2: Zinc finger- 79.9 5.4 0.00012 39.8 6.7 68 210-280 6-73 (230)
61 PF12325 TMF_TATA_bd: TATA ele 78.8 54 0.0012 30.1 13.7 107 125-251 13-119 (120)
62 PF05852 DUF848: Gammaherpesvi 78.6 6.2 0.00013 37.6 6.4 49 183-231 57-105 (146)
63 KOG2077 JNK/SAPK-associated pr 78.1 12 0.00026 42.7 9.3 71 242-340 353-423 (832)
64 PF05557 MAD: Mitotic checkpoi 77.3 2.7 5.9E-05 46.6 4.2 134 51-202 335-469 (722)
65 TIGR02894 DNA_bind_RsfA transc 76.9 36 0.00078 33.2 11.0 96 139-256 58-153 (161)
66 COG2433 Uncharacterized conser 76.4 1.3E+02 0.0028 34.9 16.5 46 76-121 322-371 (652)
67 PF10473 CENP-F_leu_zip: Leuci 75.9 73 0.0016 30.1 13.2 82 133-214 8-93 (140)
68 TIGR02231 conserved hypothetic 75.8 17 0.00037 38.8 9.5 33 126-158 69-101 (525)
69 PF08317 Spc7: Spc7 kinetochor 74.4 20 0.00044 36.4 9.2 60 78-159 234-293 (325)
70 PF15254 CCDC14: Coiled-coil d 74.0 37 0.0008 39.9 11.9 98 130-227 436-548 (861)
71 PF07106 TBPIP: Tat binding pr 73.9 20 0.00043 33.0 8.2 58 24-81 78-137 (169)
72 KOG0994 Extracellular matrix g 73.8 2.5E+02 0.0053 35.3 23.3 21 315-336 1696-1716(1758)
73 PF12329 TMF_DNA_bd: TATA elem 73.6 14 0.00031 30.9 6.6 56 28-83 1-70 (74)
74 PRK11281 hypothetical protein; 73.1 2.3E+02 0.0049 34.6 29.1 166 182-348 280-464 (1113)
75 TIGR01005 eps_transp_fam exopo 72.5 1.7E+02 0.0036 32.7 17.8 52 218-269 355-406 (754)
76 PF10046 BLOC1_2: Biogenesis o 72.4 32 0.00068 29.9 8.6 69 192-260 12-80 (99)
77 KOG0933 Structural maintenance 72.3 2.4E+02 0.0053 34.6 21.6 179 26-267 678-857 (1174)
78 KOG0996 Structural maintenance 72.1 2.6E+02 0.0056 34.8 23.6 225 62-313 269-511 (1293)
79 KOG0979 Structural maintenance 70.0 2.7E+02 0.0058 34.1 23.2 162 21-201 177-339 (1072)
80 PF05701 WEMBL: Weak chloropla 69.8 1.8E+02 0.0038 31.9 18.4 117 125-241 306-426 (522)
81 smart00787 Spc7 Spc7 kinetocho 69.6 32 0.0007 35.6 9.4 116 21-159 171-288 (312)
82 TIGR01843 type_I_hlyD type I s 69.4 1.3E+02 0.0027 30.1 18.0 28 243-270 200-227 (423)
83 KOG2685 Cystoskeletal protein 69.3 38 0.00083 37.1 10.2 102 131-263 288-389 (421)
84 PF04156 IncA: IncA protein; 69.2 95 0.0021 28.6 15.3 41 133-173 79-119 (191)
85 PF10211 Ax_dynein_light: Axon 69.2 48 0.001 31.9 9.9 113 139-268 30-149 (189)
86 PF06785 UPF0242: Uncharacteri 69.1 47 0.001 36.1 10.6 91 177-281 96-186 (401)
87 PF09728 Taxilin: Myosin-like 67.6 1.6E+02 0.0034 30.5 24.2 91 175-268 197-294 (309)
88 PF11068 YlqD: YlqD protein; 67.5 11 0.00024 34.9 5.1 62 52-113 12-73 (131)
89 COG2433 Uncharacterized conser 67.4 73 0.0016 36.7 12.2 206 60-289 352-595 (652)
90 COG2825 HlpA Outer membrane pr 66.9 67 0.0014 30.7 10.3 86 123-211 39-130 (170)
91 PHA03161 hypothetical protein; 66.3 19 0.00041 34.7 6.5 48 184-231 58-105 (150)
92 COG1842 PspA Phage shock prote 66.3 1.5E+02 0.0032 29.7 19.1 66 8-77 11-76 (225)
93 COG0419 SbcC ATPase involved i 65.7 2.6E+02 0.0056 32.3 28.8 9 120-128 456-464 (908)
94 KOG0994 Extracellular matrix g 65.6 3.6E+02 0.0079 34.0 19.9 159 26-186 1540-1716(1758)
95 KOG0612 Rho-associated, coiled 65.3 3.5E+02 0.0077 33.8 22.7 24 63-86 497-520 (1317)
96 PF12325 TMF_TATA_bd: TATA ele 65.2 35 0.00076 31.3 7.8 47 17-66 8-54 (120)
97 COG5185 HEC1 Protein involved 65.0 2.3E+02 0.0049 32.5 15.0 135 119-267 248-389 (622)
98 KOG0995 Centromere-associated 63.9 2.7E+02 0.0059 32.0 22.2 40 265-304 395-439 (581)
99 PF11559 ADIP: Afadin- and alp 63.7 25 0.00055 31.7 6.6 57 26-82 74-130 (151)
100 PRK04863 mukB cell division pr 63.4 3.9E+02 0.0085 33.6 27.6 201 127-349 441-671 (1486)
101 PF15070 GOLGA2L5: Putative go 62.5 2.8E+02 0.0061 31.7 23.8 68 134-201 86-174 (617)
102 PF07926 TPR_MLP1_2: TPR/MLP1/ 62.0 1.2E+02 0.0026 27.3 16.4 127 39-198 3-130 (132)
103 PRK09039 hypothetical protein; 61.8 2.1E+02 0.0045 29.9 15.9 34 188-224 166-199 (343)
104 PF05622 HOOK: HOOK protein; 61.7 2.6 5.7E-05 46.7 0.0 137 184-338 190-340 (713)
105 KOG1937 Uncharacterized conser 61.5 1.9E+02 0.0041 32.7 13.7 117 181-311 301-426 (521)
106 PRK04778 septation ring format 60.8 2.6E+02 0.0057 30.8 22.4 165 24-201 104-296 (569)
107 PRK10361 DNA recombination pro 60.2 1.6E+02 0.0035 32.8 12.9 25 125-149 137-161 (475)
108 PF08614 ATG16: Autophagy prot 59.3 16 0.00034 34.6 4.7 105 25-162 81-186 (194)
109 PF03148 Tektin: Tektin family 58.2 80 0.0017 33.2 9.9 99 128-247 258-356 (384)
110 PF13747 DUF4164: Domain of un 58.2 24 0.00051 30.7 5.2 57 217-273 10-66 (89)
111 PF05701 WEMBL: Weak chloropla 57.9 2.9E+02 0.0063 30.3 28.1 151 33-200 28-192 (522)
112 PF09726 Macoilin: Transmembra 57.0 3.7E+02 0.0079 31.2 23.4 184 124-325 414-617 (697)
113 KOG0999 Microtubule-associated 56.8 3.8E+02 0.0083 31.3 16.3 60 225-287 88-147 (772)
114 PF07106 TBPIP: Tat binding pr 56.6 33 0.00071 31.6 6.1 40 115-155 60-99 (169)
115 KOG4674 Uncharacterized conser 56.4 5.7E+02 0.012 33.2 24.4 189 22-228 77-272 (1822)
116 PF07820 TraC: TraC-like prote 55.5 23 0.0005 31.8 4.8 50 138-198 5-54 (92)
117 PRK06569 F0F1 ATP synthase sub 54.2 2.1E+02 0.0045 27.6 13.5 61 179-242 91-152 (155)
118 TIGR00998 8a0101 efflux pump m 54.2 2E+02 0.0042 28.3 11.3 63 23-85 78-140 (334)
119 PF09744 Jnk-SapK_ap_N: JNK_SA 53.7 1.2E+02 0.0026 29.1 9.4 60 142-209 50-111 (158)
120 TIGR00998 8a0101 efflux pump m 53.5 2.3E+02 0.005 27.8 14.6 44 245-288 185-233 (334)
121 PF04508 Pox_A_type_inc: Viral 53.1 14 0.00031 26.0 2.4 20 26-45 2-21 (23)
122 PF08580 KAR9: Yeast cortical 53.0 53 0.0012 37.5 8.2 97 121-234 57-156 (683)
123 PF10146 zf-C4H2: Zinc finger- 52.1 1.1E+02 0.0023 30.9 9.2 62 81-154 32-93 (230)
124 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.8 1.8E+02 0.004 26.2 12.9 67 228-311 48-114 (132)
125 PF12718 Tropomyosin_1: Tropom 51.0 2.1E+02 0.0045 26.6 12.1 48 215-262 49-96 (143)
126 PRK13848 conjugal transfer pro 50.6 27 0.00058 31.9 4.4 32 140-180 8-39 (98)
127 PF14662 CCDC155: Coiled-coil 50.5 1.5E+02 0.0032 29.8 9.8 53 180-232 8-60 (193)
128 PF04156 IncA: IncA protein; 50.4 2.1E+02 0.0045 26.4 10.4 18 184-201 99-116 (191)
129 COG4487 Uncharacterized protei 48.9 2.7E+02 0.0057 31.1 12.2 39 533-571 365-403 (438)
130 PF15254 CCDC14: Coiled-coil d 48.6 5.6E+02 0.012 30.9 15.7 85 181-265 449-555 (861)
131 PF10018 Med4: Vitamin-D-recep 48.5 1.2E+02 0.0026 28.8 8.7 59 181-257 3-61 (188)
132 TIGR01843 type_I_hlyD type I s 48.4 2.9E+02 0.0064 27.6 18.8 30 241-270 248-277 (423)
133 PF08232 Striatin: Striatin fa 46.9 53 0.0011 30.2 5.8 47 297-343 20-66 (134)
134 PF12329 TMF_DNA_bd: TATA elem 46.9 1.6E+02 0.0035 24.8 8.2 63 193-265 11-73 (74)
135 PF12777 MT: Microtubule-bindi 46.8 29 0.00062 35.6 4.6 46 19-64 215-260 (344)
136 PF12718 Tropomyosin_1: Tropom 46.7 2.5E+02 0.0053 26.2 14.8 111 129-263 22-132 (143)
137 PF05010 TACC: Transforming ac 46.4 2.2E+02 0.0047 28.5 10.3 115 21-147 79-194 (207)
138 KOG0804 Cytoplasmic Zn-finger 44.6 3.3E+02 0.0071 30.8 12.1 60 186-258 388-447 (493)
139 PF11559 ADIP: Afadin- and alp 44.4 2.4E+02 0.0053 25.5 13.5 77 215-311 73-149 (151)
140 PF06008 Laminin_I: Laminin Do 43.8 3.3E+02 0.0071 26.8 19.3 71 142-226 167-241 (264)
141 PF08614 ATG16: Autophagy prot 43.6 1.4E+02 0.003 28.3 8.3 159 49-243 7-165 (194)
142 PF14197 Cep57_CLD_2: Centroso 42.3 1.6E+02 0.0034 24.8 7.4 62 23-84 3-64 (69)
143 PF05597 Phasin: Poly(hydroxya 42.2 2.9E+02 0.0064 25.8 11.1 84 148-231 35-125 (132)
144 PF08700 Vps51: Vps51/Vps67; 41.7 1.9E+02 0.0041 23.4 8.9 61 167-231 7-67 (87)
145 COG3883 Uncharacterized protei 41.4 3.9E+02 0.0084 28.0 11.5 62 94-155 154-217 (265)
146 PF04880 NUDE_C: NUDE protein, 41.3 37 0.00079 32.9 4.1 53 241-329 2-54 (166)
147 KOG4637 Adaptor for phosphoino 41.2 5.2E+02 0.011 28.9 12.8 105 26-154 140-249 (464)
148 TIGR03007 pepcterm_ChnLen poly 41.1 4.5E+02 0.0099 27.7 19.4 12 13-24 124-135 (498)
149 PF10828 DUF2570: Protein of u 41.0 2.5E+02 0.0054 24.8 8.9 62 139-204 22-84 (110)
150 PF14197 Cep57_CLD_2: Centroso 40.4 1.9E+02 0.0041 24.4 7.6 59 142-200 5-67 (69)
151 PF09738 DUF2051: Double stran 40.2 4.7E+02 0.01 27.5 14.3 102 190-308 115-239 (302)
152 TIGR01000 bacteriocin_acc bact 39.8 4.8E+02 0.011 27.6 17.5 52 238-289 290-347 (457)
153 KOG4001 Axonemal dynein light 39.6 1.7E+02 0.0037 30.2 8.6 70 134-219 184-253 (259)
154 PRK10884 SH3 domain-containing 39.5 3.9E+02 0.0085 26.5 11.4 59 180-238 118-181 (206)
155 PF04012 PspA_IM30: PspA/IM30 39.4 3.4E+02 0.0074 25.7 19.1 116 8-155 10-125 (221)
156 KOG4593 Mitotic checkpoint pro 39.0 7.3E+02 0.016 29.4 21.4 90 185-274 188-303 (716)
157 PF15397 DUF4618: Domain of un 38.5 4.8E+02 0.01 27.2 15.1 193 22-233 24-232 (258)
158 KOG0978 E3 ubiquitin ligase in 38.0 7.4E+02 0.016 29.2 14.7 113 138-250 396-531 (698)
159 PF07058 Myosin_HC-like: Myosi 37.9 2.1E+02 0.0045 31.0 9.1 78 29-157 4-81 (351)
160 PF13166 AAA_13: AAA domain 37.6 5.9E+02 0.013 28.0 20.4 82 181-266 316-397 (712)
161 PRK13729 conjugal transfer pil 36.9 99 0.0022 34.5 7.0 24 183-206 72-95 (475)
162 PF02403 Seryl_tRNA_N: Seryl-t 36.6 1.3E+02 0.0029 25.6 6.3 67 19-85 23-92 (108)
163 PTZ00464 SNF-7-like protein; P 35.6 4.6E+02 0.01 26.1 13.6 34 196-231 104-137 (211)
164 TIGR02231 conserved hypothetic 35.5 1.6E+02 0.0034 31.8 8.0 28 287-314 123-150 (525)
165 PF12761 End3: Actin cytoskele 35.4 84 0.0018 31.4 5.6 45 6-50 72-121 (195)
166 PF05130 FlgN: FlgN protein; 35.3 2.7E+02 0.0058 23.3 10.6 97 125-221 2-122 (143)
167 PF00901 Orbi_VP5: Orbivirus o 35.3 6.4E+02 0.014 28.8 12.7 170 17-244 72-243 (508)
168 PF06818 Fez1: Fez1; InterPro 34.8 2.8E+02 0.0061 28.0 9.1 43 248-290 133-178 (202)
169 PF06632 XRCC4: DNA double-str 34.5 4E+02 0.0087 28.4 10.6 70 187-268 137-209 (342)
170 PF09849 DUF2076: Uncharacteri 34.5 92 0.002 31.7 5.9 46 295-341 4-73 (247)
171 KOG4403 Cell surface glycoprot 34.4 1.3E+02 0.0027 34.0 7.2 73 26-99 253-363 (575)
172 PRK01156 chromosome segregatio 34.3 7.6E+02 0.016 28.3 30.8 34 242-275 412-445 (895)
173 cd08325 CARD_CASP1-like Caspas 34.2 22 0.00048 30.1 1.3 44 496-539 14-60 (83)
174 cd00584 Prefoldin_alpha Prefol 34.1 2.9E+02 0.0062 24.2 8.2 89 183-275 2-123 (129)
175 PRK10476 multidrug resistance 33.9 5.1E+02 0.011 26.1 11.6 21 32-52 86-106 (346)
176 PF13514 AAA_27: AAA domain 33.9 8.8E+02 0.019 28.9 29.7 292 26-331 619-976 (1111)
177 PF09730 BicD: Microtubule-ass 33.5 4.8E+02 0.01 30.7 11.8 102 130-262 36-137 (717)
178 COG3883 Uncharacterized protei 33.1 1.8E+02 0.004 30.2 7.8 41 182-229 61-101 (265)
179 PF14662 CCDC155: Coiled-coil 32.6 5.4E+02 0.012 26.0 16.8 91 133-262 93-188 (193)
180 COG1730 GIM5 Predicted prefold 32.5 4.5E+02 0.0098 25.1 9.8 79 182-267 8-122 (145)
181 PF01486 K-box: K-box region; 32.4 2.9E+02 0.0063 23.6 7.7 77 133-209 17-97 (100)
182 PF04111 APG6: Autophagy prote 31.9 2.6E+02 0.0056 29.0 8.6 53 21-73 39-91 (314)
183 PF04977 DivIC: Septum formati 31.8 1.1E+02 0.0024 24.1 4.8 27 25-51 24-50 (80)
184 PF01920 Prefoldin_2: Prefoldi 31.7 1.9E+02 0.0042 23.8 6.4 74 239-312 5-86 (106)
185 PF06810 Phage_GP20: Phage min 31.6 2.1E+02 0.0045 27.0 7.3 87 15-116 8-96 (155)
186 PF03999 MAP65_ASE1: Microtubu 31.5 1.6E+02 0.0035 32.8 7.6 81 56-146 260-341 (619)
187 PF01576 Myosin_tail_1: Myosin 30.9 16 0.00035 42.0 0.0 187 129-339 33-224 (859)
188 PRK03947 prefoldin subunit alp 29.9 3.4E+02 0.0073 24.3 8.0 40 236-275 91-130 (140)
189 PRK09343 prefoldin subunit bet 29.8 4.2E+02 0.0091 23.9 11.5 86 140-225 19-109 (121)
190 PF10359 Fmp27_WPPW: RNA pol I 29.7 1.3E+02 0.0028 32.6 6.4 68 17-85 155-225 (475)
191 PF10186 Atg14: UV radiation r 29.3 5.1E+02 0.011 24.7 14.5 34 507-541 263-296 (302)
192 PRK10780 periplasmic chaperone 29.2 3.6E+02 0.0079 25.0 8.4 74 121-202 36-109 (165)
193 PF08702 Fib_alpha: Fibrinogen 29.1 93 0.002 29.2 4.6 83 11-93 22-123 (146)
194 TIGR02209 ftsL_broad cell divi 29.0 1.2E+02 0.0026 24.6 4.7 42 24-65 30-71 (85)
195 PF10498 IFT57: Intra-flagella 28.9 1.5E+02 0.0033 31.5 6.6 61 30-90 264-324 (359)
196 KOG3990 Uncharacterized conser 28.7 1.5E+02 0.0033 31.4 6.4 37 503-539 225-261 (305)
197 TIGR00634 recN DNA repair prot 28.7 8.2E+02 0.018 26.9 18.7 40 30-69 159-198 (563)
198 TIGR02338 gimC_beta prefoldin, 28.7 4E+02 0.0087 23.3 8.9 98 237-340 8-105 (110)
199 cd07675 F-BAR_FNBP1L The F-BAR 28.6 6.6E+02 0.014 25.8 11.7 106 123-229 94-216 (252)
200 TIGR02473 flagell_FliJ flagell 28.5 3.9E+02 0.0084 23.1 10.8 40 232-271 54-93 (141)
201 PRK10865 protein disaggregatio 28.3 4E+02 0.0087 31.1 10.2 21 266-292 530-550 (857)
202 PRK09413 IS2 repressor TnpA; R 28.2 1.1E+02 0.0023 27.0 4.6 36 182-217 73-112 (121)
203 KOG0239 Kinesin (KAR3 subfamil 28.2 2.3E+02 0.0049 32.7 8.1 111 181-308 194-313 (670)
204 PF11932 DUF3450: Protein of u 27.5 6E+02 0.013 24.9 10.2 34 303-342 132-165 (251)
205 PF10153 DUF2361: Uncharacteri 27.4 5E+02 0.011 24.0 8.9 96 150-271 5-100 (114)
206 PF08317 Spc7: Spc7 kinetochor 26.5 7.2E+02 0.016 25.6 16.5 82 135-229 209-290 (325)
207 PF04111 APG6: Autophagy prote 26.5 1.7E+02 0.0036 30.4 6.2 7 99-105 116-122 (314)
208 PF13600 DUF4140: N-terminal d 26.4 90 0.0019 26.4 3.7 36 123-158 65-100 (104)
209 TIGR02473 flagell_FliJ flagell 26.3 2.3E+02 0.0049 24.5 6.2 43 29-74 86-128 (141)
210 PF05837 CENP-H: Centromere pr 26.0 4.7E+02 0.01 23.2 9.2 50 180-229 3-52 (106)
211 PRK06569 F0F1 ATP synthase sub 25.9 2E+02 0.0043 27.7 6.2 69 31-101 61-130 (155)
212 KOG4809 Rab6 GTPase-interactin 25.8 3.6E+02 0.0078 31.3 9.0 70 69-152 375-445 (654)
213 PF00261 Tropomyosin: Tropomyo 25.8 6.4E+02 0.014 24.7 24.0 18 130-147 94-111 (237)
214 PRK10246 exonuclease subunit S 25.6 1.2E+03 0.026 27.9 31.4 27 26-52 531-557 (1047)
215 PF09787 Golgin_A5: Golgin sub 25.5 9.2E+02 0.02 26.4 19.5 122 183-311 158-297 (511)
216 COG5606 Uncharacterized conser 25.3 53 0.0012 29.7 2.2 21 286-306 29-49 (91)
217 PF14988 DUF4515: Domain of un 25.2 6.7E+02 0.015 24.8 16.5 35 26-60 48-82 (206)
218 PF14992 TMCO5: TMCO5 family 25.0 8.4E+02 0.018 25.8 14.5 33 235-267 147-181 (280)
219 PF13851 GAS: Growth-arrest sp 25.0 6.6E+02 0.014 24.6 10.5 84 182-265 36-119 (201)
220 KOG0614 cGMP-dependent protein 24.8 1.4E+02 0.003 34.6 5.7 47 28-74 27-73 (732)
221 PF08581 Tup_N: Tup N-terminal 24.6 1.6E+02 0.0036 25.4 4.9 57 505-561 13-76 (79)
222 KOG0979 Structural maintenance 24.5 1.4E+03 0.031 28.3 18.4 203 37-264 634-881 (1072)
223 cd00890 Prefoldin Prefoldin is 24.5 4.5E+02 0.0097 22.5 9.2 87 183-273 2-121 (129)
224 PF11932 DUF3450: Protein of u 24.2 6.9E+02 0.015 24.5 12.3 72 27-98 23-94 (251)
225 KOG4643 Uncharacterized coiled 23.6 1.1E+03 0.024 29.4 12.6 68 136-208 258-336 (1195)
226 KOG0964 Structural maintenance 23.6 1.5E+03 0.033 28.3 19.8 163 62-251 722-887 (1200)
227 KOG1962 B-cell receptor-associ 23.5 1.4E+02 0.0031 30.2 5.0 60 20-86 153-212 (216)
228 KOG4673 Transcription factor T 23.3 1.4E+03 0.03 27.7 19.9 129 27-170 411-565 (961)
229 KOG3501 Molecular chaperone Pr 22.9 1.5E+02 0.0032 27.9 4.5 102 60-174 3-106 (114)
230 PRK11519 tyrosine kinase; Prov 22.9 3.4E+02 0.0073 30.8 8.2 14 13-26 230-243 (719)
231 KOG2483 Upstream transcription 22.7 6.3E+02 0.014 25.8 9.3 33 304-336 107-139 (232)
232 PRK09458 pspB phage shock prot 22.5 1.9E+02 0.0041 25.4 4.8 46 287-343 17-69 (75)
233 PF05103 DivIVA: DivIVA protei 22.5 38 0.00082 29.2 0.7 41 159-199 78-119 (131)
234 TIGR03185 DNA_S_dndD DNA sulfu 22.5 1.1E+03 0.024 26.3 24.1 24 29-52 206-229 (650)
235 TIGR00293 prefoldin, archaeal 22.2 3.8E+02 0.0083 23.3 6.8 91 182-276 1-123 (126)
236 PRK00888 ftsB cell division pr 22.0 1.1E+02 0.0024 27.2 3.5 31 183-213 44-74 (105)
237 KOG4484 Uncharacterized conser 21.4 8.7E+02 0.019 24.7 11.0 91 146-253 28-123 (199)
238 PRK03598 putative efflux pump 21.3 8.3E+02 0.018 24.4 9.8 46 61-106 115-160 (331)
239 TIGR01005 eps_transp_fam exopo 21.3 1.2E+03 0.026 26.3 15.8 24 26-49 238-261 (754)
240 PF04999 FtsL: Cell division p 21.1 1.8E+02 0.004 24.4 4.5 45 21-65 38-82 (97)
241 KOG0018 Structural maintenance 20.8 1.7E+03 0.037 27.9 21.1 40 65-104 158-197 (1141)
242 KOG2150 CCR4-NOT transcription 20.8 8.7E+02 0.019 28.2 10.7 124 59-232 4-139 (575)
243 PF05046 Img2: Mitochondrial l 20.6 44 0.00096 28.7 0.7 30 266-299 58-87 (87)
No 1
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=100.00 E-value=3.9e-156 Score=1154.03 Aligned_cols=343 Identities=61% Similarity=0.823 Sum_probs=312.5
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHH
Q 007791 181 IVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLER 260 (589)
Q Consensus 181 iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeR 260 (589)
|||||||+||||||||||||||||||||||||||+|||||||||+||||||||||+|||||||||||++|||||||||||
T Consensus 1 iVdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeR 80 (351)
T PF07058_consen 1 IVDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLER 80 (351)
T ss_pred CchhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHhhhC
Q 007791 261 ELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLK 340 (589)
Q Consensus 261 ELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAKaEaQLkeKlklRLK~LEE~Lk 340 (589)
||||||||||||||||||||||+||||||||||||||||||||||||||||||||||||+|||||||||+||||||||||
T Consensus 81 ELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk 160 (351)
T PF07058_consen 81 ELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLK 160 (351)
T ss_pred HHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCc--ccCCCCCccccccccccc-----ccCCccccc-CCCCCCccccccccccccCCCccccccCCcccCc
Q 007791 341 HVSSFSGSPNT--FCGSPKTEKSSNIILGFL-----TANGGLRKR-STSQPRASTISRNSLLHQPNSENATVNGNFTGGL 412 (589)
Q Consensus 341 ~~~s~s~~~t~--r~~S~~p~r~~s~~~g~~-----t~Ng~~~rR-~~sQ~R~s~~~~~~~l~~pn~~~~~~~~~~~s~~ 412 (589)
+++|+++++|+ +|.|+||++|++ +||++ ++||++.+| |+||||+|++|+++++++ |++++|+
T Consensus 161 ~~~s~~~~~~~~~~s~~~gps~r~~-lgg~~~~~~~~sng~~~kr~~~sq~r~s~~~~~~~~lk--------~~~~~s~- 230 (351)
T PF07058_consen 161 GSSSNSSRPTSEGKSPSNGPSRRQS-LGGAENFSKLSSNGGLSKRRPSSQPRSSLSGSSSPVLK--------HAKGTSK- 230 (351)
T ss_pred CCCCCCCCCCcCCCCCCCCCccCcC-CCCccccccccCCCccccCCCcccccccccccchhhhc--------ccccCcc-
Confidence 99999999988 888999999998 88877 678876655 999999999999988887 8899999
Q ss_pred cccCCcccccccccchhccccCCCCcccccCCCCCccccccccccCCccccccCCcccccccccccCCcccccccCCCCC
Q 007791 413 KRADSFRKKCAAGENVLRKSIWPSKNKVVDSSCGKENTQVKENKDNNIDEFKIGDTNVSVEVKNKVGGYEHEVSQNKGNP 492 (589)
Q Consensus 413 ~~~~s~~~~~~s~e~~l~~~~w~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (589)
|||||+++ + +++++..||+.+. .+ .+.+++.........+....+++.+
T Consensus 231 ----sfdgg~rs----l------d~~k~~~ng~~~~---------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (351)
T PF07058_consen 231 ----SFDGGSRS----L------DRSKVLANGPENH---------------PV--NSKSTDASKEAEKENSEEKPNSEKP 279 (351)
T ss_pred ----ccccCCCc----c------hhhhhhhcCcccc---------------cc--ccchhhhhhhccccCcccccccCCC
Confidence 99999998 6 8899999998432 11 0122221111111112344455778
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHhhhhhHHHhhHHhhHHHHHhhhh
Q 007791 493 NPVKEDVVSGFLYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVDALTKAIEAESKKIKREAAAREKE 564 (589)
Q Consensus 493 ~~~~~D~VsG~LYD~LQKEVi~LRKac~~Kd~sL~~KD~~IeML~KKVdtLtKAmEVE~KKmrRE~Aa~EKE 564 (589)
+++++|+||||||||||||||+|||+||+|||||+||||||+||+|||||||||||||||||||||||||||
T Consensus 280 ~~~~~D~VsG~LYD~LQKEVi~LRKac~eKdqsLkdKDdaIeMLaKKVdtLtKAmEVEaKKmrREvAamEKE 351 (351)
T PF07058_consen 280 NSESEDSVSGFLYDMLQKEVINLRKACHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKE 351 (351)
T ss_pred CCCcCCcchHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.88 E-value=0.064 Score=59.03 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=26.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhh
Q 007791 25 LELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKL 76 (589)
Q Consensus 25 ~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL 76 (589)
.++..|..++.....++.....+++.+...-.--+..+.++...+..+...+
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l 725 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665555554433333333444444443333333
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.76 E-value=0.1 Score=57.00 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=15.0
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007791 23 VVLELNRLQNQLKEKDRELADAQGEIKALR 52 (589)
Q Consensus 23 v~~ELnRLeN~lreKdRELg~A~aEIKaLr 52 (589)
..-++..|+.++.+...++..+..++..+.
T Consensus 668 ~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~ 697 (1179)
T TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELE 697 (1179)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555544443
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.61 E-value=0.14 Score=56.51 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=18.7
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007791 23 VVLELNRLQNQLKEKDRELADAQGEIKALRAT 54 (589)
Q Consensus 23 v~~ELnRLeN~lreKdRELg~A~aEIKaLr~t 54 (589)
..-++..|+.++.+.+.++..+..++..++..
T Consensus 679 l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~ 710 (1164)
T TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDELSQE 710 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666555555433
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.59 E-value=0.046 Score=59.64 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=17.9
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007791 23 VVLELNRLQNQLKEKDRELADAQGEIKALRA 53 (589)
Q Consensus 23 v~~ELnRLeN~lreKdRELg~A~aEIKaLr~ 53 (589)
..-++..|+..+.+...++..++.+++.+..
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~ 705 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRK 705 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666655555555543
No 6
>PRK11637 AmiB activator; Provisional
Probab=97.58 E-value=0.018 Score=59.23 Aligned_cols=135 Identities=19% Similarity=0.259 Sum_probs=66.8
Q ss_pred CCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHH
Q 007791 20 PDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKD 99 (589)
Q Consensus 20 sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~ 99 (589)
.+.+.-+|..++.++.+...++...+.+++.+ .+.++.+..++..+..++..++..+...+=+|.+++.+-..
T Consensus 42 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~-------~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 42 ASDNRDQLKSIQQDIAAKEKSVRQQQQQRASL-------LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556555555555555555555443 34455555555555555555555555555555555443332
Q ss_pred HHHHHHHHHHHH-HHHhhhccCCCCCchhhhhccchh----hHhhHHHHHHHhhhhHHHHHHHhhhhHH
Q 007791 100 ALAAQYAAEATL-RRVHANLKDDDSVPIESVLAPLEA----DIKTYKKEIAALQEDKKALQRHTKAKEM 163 (589)
Q Consensus 100 AlAAQfAAEATL-RRVHa~QKDdd~~PiEaIiAPLEA----eiK~~r~EIa~LQdDnkALeRltKsKEa 163 (589)
.=+.--..+.-| +|+.+.++..+..+++.|++.=-. .+..|=.-|+ +.|.+.++.+...++.
T Consensus 115 ~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~--~~d~~~l~~l~~~~~~ 181 (428)
T PRK11637 115 LEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLN--QARQETIAELKQTREE 181 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 222222222222 244555555566678888763211 1112222344 3467777776665543
No 7
>PRK03918 chromosome segregation protein; Provisional
Probab=97.31 E-value=0.39 Score=52.59 Aligned_cols=125 Identities=18% Similarity=0.259 Sum_probs=53.0
Q ss_pred hhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 007791 129 VLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEK 208 (589)
Q Consensus 129 IiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK 208 (589)
++.||..++..+..++..++..-..|..-.+.-+..+-+.+.....+-...-.+.++.....++..-.++..+=..+-.+
T Consensus 301 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~l~~~ 380 (880)
T PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR 380 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554433333333333333333333333333333333334433333332222222211111111
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 007791 209 TNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVK 266 (589)
Q Consensus 209 ~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaK 266 (589)
.. -.+++.|.+.+.+|+.-+ ...+.++.+++.+...+..++.-.+
T Consensus 381 l~---~~~~~~l~~~l~~l~~~~----------~~l~~~i~~l~~~~~~~~~~i~eL~ 425 (880)
T PRK03918 381 LT---GLTPEKLEKELEELEKAK----------EEIEEEISKITARIGELKKEIKELK 425 (880)
T ss_pred hc---ccCHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 124556667777766533 1244556666666666655555444
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.13 E-value=0.32 Score=53.69 Aligned_cols=120 Identities=23% Similarity=0.324 Sum_probs=71.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHH
Q 007791 182 VEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERE 261 (589)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRE 261 (589)
.-++...+.+|+.++..|..+-+=......++..|.+.|..-++-+++-+-|+---+-.++ ...+.+..-+.-.-.|
T Consensus 250 ~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~---~EL~~~~~~RDrt~ae 326 (546)
T PF07888_consen 250 KAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLR---KELSDAVNVRDRTMAE 326 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3355566667777777776666655555567778889999889999888777643333322 2223333333334455
Q ss_pred Hhhhhhcc----ccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHH
Q 007791 262 LARVKVSA----NRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKL 311 (589)
Q Consensus 262 LARaKVsa----NRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKL 311 (589)
|-+|+.-+ .+.|...+ +||.+. .||-.||..||-.+...||++
T Consensus 327 Lh~aRLe~aql~~qLad~~l-~lke~~------~q~~qEk~~l~~~~e~~k~~i 373 (546)
T PF07888_consen 327 LHQARLEAAQLKLQLADASL-ELKEGR------SQWAQEKQALQHSAEADKDEI 373 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHH-HHHHHH------HHHHHHHHHHHHHHHHhHHHH
Confidence 55555433 24444433 787765 578888888776554444443
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=96.82 E-value=1.2 Score=49.39 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=32.0
Q ss_pred hccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHH
Q 007791 130 LAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKIL 172 (589)
Q Consensus 130 iAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril 172 (589)
+..++..|...+.++..|+++...++-..+..+.+|-+++..|
T Consensus 407 ~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l 449 (880)
T PRK02224 407 LGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALL 449 (880)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888888888887777777777776543
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.66 E-value=0.96 Score=52.60 Aligned_cols=26 Identities=38% Similarity=0.392 Sum_probs=14.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHH
Q 007791 182 VEEVQNLNFELKRQIEICQEENRILE 207 (589)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLe 207 (589)
..+++|+=..|.+||+-..++..-|.
T Consensus 392 ~~~~~~~l~~l~~~i~~l~~~~~~~~ 417 (1163)
T COG1196 392 LAEIRNELEELKREIESLEERLERLS 417 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666655544443
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=96.64 E-value=1.5 Score=48.45 Aligned_cols=98 Identities=21% Similarity=0.267 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhhhh--ccccchhhhhc-------cc------ccCCC-cc-----chhHHHHHHh
Q 007791 239 NAIRDYQRQITELNEEKRTLERELARVKV--SANRVATVVAN-------EW------KDEND-KV-----MPVRQWLEER 297 (589)
Q Consensus 239 NAvrdYqrq~~elnEEkrtLeRELARaKV--saNRVA~vvAN-------EW------KD~nD-Kv-----MPVKqWLEER 297 (589)
..+.+|...+.++.++...|..+++..+. ..++-+...+. -| .++.- .+ -=++.+-++.
T Consensus 405 ~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (880)
T PRK02224 405 VDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAEL 484 (880)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHH
Confidence 46778888888887777777666554433 22332222221 01 11110 00 1133444455
Q ss_pred hhhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHh
Q 007791 298 RLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEE 337 (589)
Q Consensus 298 R~lQgEmQ~LrDKLAiaERtAKaEaQLkeKlklRLK~LEE 337 (589)
.-|..+++.++.++.-.+..-+.+.++. .++.++..|++
T Consensus 485 ~~le~~l~~~~~~~e~l~~~~~~~~~l~-~l~~~~~~l~~ 523 (880)
T PRK02224 485 EDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEE 523 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5566666666666665555544444544 45555555555
No 12
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.32 E-value=1.7 Score=45.27 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhh
Q 007791 241 IRDYQRQITELNEEKRTLERELAR 264 (589)
Q Consensus 241 vrdYqrq~~elnEEkrtLeRELAR 264 (589)
++....++.+++.++..+++|..+
T Consensus 381 l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 381 LAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888888888888766
No 13
>PRK11637 AmiB activator; Provisional
Probab=96.29 E-value=1 Score=46.69 Aligned_cols=80 Identities=8% Similarity=0.136 Sum_probs=47.0
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHH
Q 007791 24 VLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAA 103 (589)
Q Consensus 24 ~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAA 103 (589)
.-++..+++++.+...++...+.+|..|-..=..-...|.++..++..++.++..++..+....-+|....+.-+.-+.+
T Consensus 53 ~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 53 QQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777776665555555566666666666666666666666555444444433333333333
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.21 E-value=2 Score=50.17 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhh
Q 007791 186 QNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARV 265 (589)
Q Consensus 186 QN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARa 265 (589)
+.+..++..++..+..+..-++.-.+.--.+++.+...+.+|+..+ +..-.-..++.+++.++..+...+..+..++
T Consensus 834 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL---KELEEEKEELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333333333333333333333333344443332 2333444455555555555555555555544
Q ss_pred hhccc
Q 007791 266 KVSAN 270 (589)
Q Consensus 266 KVsaN 270 (589)
....|
T Consensus 911 ~~~~~ 915 (1163)
T COG1196 911 RERLE 915 (1163)
T ss_pred HHHHH
Confidence 44443
No 15
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.10 E-value=1.5 Score=42.47 Aligned_cols=95 Identities=25% Similarity=0.436 Sum_probs=65.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHH
Q 007791 25 LELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQ 104 (589)
Q Consensus 25 ~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQ 104 (589)
..+++|+|+|.|..++|.+..-|-+.||.--.--+|||.-+.+ +++-|
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~-----------~e~~L--------------------- 59 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYED-----------TEAEL--------------------- 59 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhH---------------------
Confidence 4688999999999999999999999999998888888854322 11111
Q ss_pred HHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHH
Q 007791 105 YAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILR 173 (589)
Q Consensus 105 fAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~ 173 (589)
.-||+--..||..+|..+-+.|+..+++++-.+-++.-|.-....++
T Consensus 60 ----------------------pqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 60 ----------------------PQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELK 106 (194)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11333344566666666666666666666666666666665555544
No 16
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.72 E-value=4.9 Score=45.45 Aligned_cols=336 Identities=23% Similarity=0.259 Sum_probs=183.8
Q ss_pred cccccccchhhhhhcCCCchhHh------hhhhHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Q 007791 4 FDELKLGGVEELSLAHPDPVVLE------LNRLQN---QLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDG 74 (589)
Q Consensus 4 ~~e~~~gg~~e~~~~~sDPv~~E------LnRLeN---~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~de 74 (589)
|+|-.+-|+-+++...|||+-+= ++++++ +.+++-++|-+-..|+-.++.-++-=....+.+++....++.
T Consensus 84 ~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~ 163 (629)
T KOG0963|consen 84 FAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEI 163 (629)
T ss_pred hhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHH
Confidence 45666667788999999999763 344444 455555666666677777766666666677777777777777
Q ss_pred hhh----hhHhhhhccccccccccchhHHHHHHHH-HHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhh
Q 007791 75 KLR----VTQNVLEHRNLEIKKVTGEKKDALAAQY-AAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQE 149 (589)
Q Consensus 75 KL~----~~E~lle~KNLEiKkl~~EkK~AlAAQf-AAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQd 149 (589)
..+ .++.-+++-+.+.-+.=-+..-.++.|- .+|.+.+-.|++++|-+---++.
T Consensus 164 ~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~--------------------- 222 (629)
T KOG0963|consen 164 FIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDL--------------------- 222 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---------------------
Confidence 777 7777777777766555555566677764 67888888888777643221111
Q ss_pred hHHHHHHHhh-hhHHHHHHHH-HHHHHHHHHH-HhHHHHhhhhHHHHHHHHHHHHHhHH---------------HHHhhh
Q 007791 150 DKKALQRHTK-AKEMALLEAE-KILRSALERA-LIVEEVQNLNFELKRQIEICQEENRI---------------LEKTNR 211 (589)
Q Consensus 150 DnkALeRltK-sKEaALlEAe-ril~sAl~kA-~iVedvQN~N~EL~kQiEIcqEENki---------------LeK~hR 211 (589)
-.+ -.|.+..-|| .+|-.=|++| ..+.++|-.+-.|.-|..-.-+.-+. .|+.+-
T Consensus 223 -------~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~ 295 (629)
T KOG0963|consen 223 -------KSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIA 295 (629)
T ss_pred -------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHH
Confidence 011 1111111111 1111122222 12233333333333332222111111 444444
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhh--------hcccc---ch-hhhhcc
Q 007791 212 QKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVK--------VSANR---VA-TVVANE 279 (589)
Q Consensus 212 QKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaK--------VsaNR---VA-~vvANE 279 (589)
|=+.+|+.+.....++.|. -+++|-+--++......+..+|++.|---. +++=+ .+ +.=||-
T Consensus 296 ~L~~di~~~~~S~~~e~e~------~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~ 369 (629)
T KOG0963|consen 296 QLSNDIERLEASLVEEREK------HKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDSEEAND 369 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCcccccc
Confidence 5555555555444444443 356677777788888888888877764221 11111 11 233455
Q ss_pred cccCCCccchhHHHHHHhhhhHHHHHHHHHHHH-HhHHhHHHH-----HHHHHHHHHHH-HHHHhhhCCCCCCCCCCCc-
Q 007791 280 WKDENDKVMPVRQWLEERRLLQAEMQRLKDKLA-ISERTAKAE-----AQLKEKLKLRL-KTLEEGLKHVSSFSGSPNT- 351 (589)
Q Consensus 280 WKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKLA-iaERtAKaE-----aQLkeKlklRL-K~LEE~Lk~~~s~s~~~t~- 351 (589)
|- ++++-|-. +.|+.=|+||.|.-.||-..+ .+.|-.++. .--++--+.|+ --||.+|..+.+.++++.+
T Consensus 370 ~~-~~~~~les-lLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~~~~~ 447 (629)
T KOG0963|consen 370 ED-ETAKTLES-LLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPAEGAT 447 (629)
T ss_pred cc-cccchHHH-HHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCCCcch
Confidence 54 44444432 466777889999999997654 344444432 22223345555 7899999988765555544
Q ss_pred ---ccCCCCCccccccc-ccccccCCcc
Q 007791 352 ---FCGSPKTEKSSNII-LGFLTANGGL 375 (589)
Q Consensus 352 ---r~~S~~p~r~~s~~-~g~~t~Ng~~ 375 (589)
-.+|++|..-++.. +|...++|+.
T Consensus 448 ~~~~~~~~~~v~e~s~~~~~p~~~~~~~ 475 (629)
T KOG0963|consen 448 ARREEGSGQPVPESSIMGGGPSLPNGGV 475 (629)
T ss_pred hhhcccCCcCCCcccccCCCCCcccccc
Confidence 33344444444422 3334444443
No 17
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.10 E-value=9.6 Score=45.01 Aligned_cols=63 Identities=13% Similarity=0.416 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhH
Q 007791 29 RLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKK 98 (589)
Q Consensus 29 RLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK 98 (589)
.|+.++...+..|..+..+.+.+ ++.+......+..+...+...+..+++...++..+++++.
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~-------e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 666 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEEL-------EKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNERE 666 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444444444444443332 4444445555555555555566666666666666666653
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.00 E-value=9 Score=44.17 Aligned_cols=170 Identities=26% Similarity=0.367 Sum_probs=98.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH--------------HHHHHHHHHHHhHHHH-HhhhhhHHH
Q 007791 152 KALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFE--------------LKRQIEICQEENRILE-KTNRQKVLE 216 (589)
Q Consensus 152 kALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~E--------------L~kQiEIcqEENkiLe-K~hRQKV~E 216 (589)
+||..+.--|+......|+.|+- +++..+- ++||+|-+.-.-..+- ||.|-++
T Consensus 227 ~alq~~ie~Kd~ki~~lEr~l~~----------le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~-- 294 (775)
T PF10174_consen 227 EALQTVIEEKDTKIASLERMLRD----------LEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKL-- 294 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence 36777777788888888777764 4444444 4556666666655552 4444332
Q ss_pred HHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccchhHH----
Q 007791 217 VEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQ---- 292 (589)
Q Consensus 217 VEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPVKq---- 292 (589)
.|+.+-.||+..-==-.+..|...||+.-|.-|.+..+..+-+-..---.+-+.-+=+ +......+=|+
T Consensus 295 --eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl-----e~k~~~l~kk~~~~~ 367 (775)
T PF10174_consen 295 --ELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL-----EEKNSQLEKKQAQIE 367 (775)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 2444444444433333457788889988888887776665543221111110000000 01111223233
Q ss_pred -HHHHhhhhHHHHHHHHHHHHHhHHhH--------HHHHHHHHHHHHHHHHHHhhhCC
Q 007791 293 -WLEERRLLQAEMQRLKDKLAISERTA--------KAEAQLKEKLKLRLKTLEEGLKH 341 (589)
Q Consensus 293 -WLEERR~lQgEmQ~LrDKLAiaERtA--------KaEaQLkeKlklRLK~LEE~Lk~ 341 (589)
-=+|..-+++||-.|+|.+-+.+|-- ..+-+|++|-+ +|..+-+.|..
T Consensus 368 ~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~-ql~~~k~Rl~~ 424 (775)
T PF10174_consen 368 KLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDR-QLDEEKERLSS 424 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 56788899999999999999999643 24567777643 46666666664
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.93 E-value=12 Score=47.11 Aligned_cols=284 Identities=24% Similarity=0.355 Sum_probs=164.1
Q ss_pred CchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhh----hHhhhh---ccccccccc
Q 007791 21 DPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRV----TQNVLE---HRNLEIKKV 93 (589)
Q Consensus 21 DPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~----~E~lle---~KNLEiKkl 93 (589)
|...-+++.|+-++++..+.+.+...++.+.|.+-.-=+|+..+|..+|..+.+.|.- |..+++ .+-.|+.++
T Consensus 1086 e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l 1165 (1930)
T KOG0161|consen 1086 EDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKL 1165 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4444556666677777777777777777777777777777777777777665554433 333333 223455555
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhccCCCC----------CchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHH
Q 007791 94 TGEKKDALAAQYAAEATLRRVHANLKDDDS----------VPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEM 163 (589)
Q Consensus 94 ~~EkK~AlAAQfAAEATLRRVHa~QKDdd~----------~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEa 163 (589)
...-..+.-.+-+-=++||.-|+-.-.+=. --++-.=.-|+.++.-+..++..+.-++.-+++..+.=|+
T Consensus 1166 ~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~ 1245 (1930)
T KOG0161|consen 1166 RRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEA 1245 (1930)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 544444444555555666665543211100 1233444556666666667777777777777777766665
Q ss_pred HHHHHHHHHHHHH----HHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhh
Q 007791 164 ALLEAEKILRSAL----ERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAAN 239 (589)
Q Consensus 164 ALlEAeril~sAl----~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaAN 239 (589)
-|-|+..-+.--- ..+.-.--++|.|.+|-+|.|-..-..--+-+........++-+. ++||+--=+-.+.++
T Consensus 1246 ~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k---~qle~e~r~k~~l~~ 1322 (1930)
T KOG0161|consen 1246 QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELK---RQLEEETREKSALEN 1322 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 5555443322110 012223346788888888887665555555555555556666553 456666666778899
Q ss_pred hHHHHHHHHHHHHH-------HHhHHHHHHhhhhhccccchhhhhcccccCCCc--cchhHHHHHHhhhhHHHHHHHHHH
Q 007791 240 AIRDYQRQITELNE-------EKRTLERELARVKVSANRVATVVANEWKDENDK--VMPVRQWLEERRLLQAEMQRLKDK 310 (589)
Q Consensus 240 AvrdYqrq~~elnE-------EkrtLeRELARaKVsaNRVA~vvANEWKD~nDK--vMPVKqWLEERR~lQgEmQ~LrDK 310 (589)
+++-+++....|.+ -+.-|.|+|.++.. =+.+|+---+- .--...--|+++.++-.+|.+-..
T Consensus 1323 ~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~--------e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~ 1394 (1930)
T KOG0161|consen 1323 ALRQLEHELDLLREQLEEEQEAKNELERKLSKANA--------ELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQ 1394 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99988877766654 45667787776543 34677642111 111233344566666666665555
Q ss_pred HHHhH
Q 007791 311 LAISE 315 (589)
Q Consensus 311 LAiaE 315 (589)
+-.+.
T Consensus 1395 ~e~~~ 1399 (1930)
T KOG0161|consen 1395 IEAAN 1399 (1930)
T ss_pred HHHHH
Confidence 44433
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=94.50 E-value=9.6 Score=42.16 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=18.4
Q ss_pred chhhhhccchhhHhhHHHHHHHhhhhHH
Q 007791 125 PIESVLAPLEADIKTYKKEIAALQEDKK 152 (589)
Q Consensus 125 PiEaIiAPLEAeiK~~r~EIa~LQdDnk 152 (589)
|+...+.-|+.++..+..++..|+...+
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 331 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIK 331 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777766666665554
No 21
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.39 E-value=7.8 Score=40.69 Aligned_cols=96 Identities=28% Similarity=0.368 Sum_probs=56.5
Q ss_pred HHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhh-cccccCCCccchhHHHH
Q 007791 216 EVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVA-NEWKDENDKVMPVRQWL 294 (589)
Q Consensus 216 EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvA-NEWKD~nDKvMPVKqWL 294 (589)
+++.|...--+||-++=+-.-+ -|-..+.|+..|+.|||.|++.|..+ ||+ ..+..- +.-...+|-++-.---
T Consensus 157 ~le~Lr~EKVdlEn~LE~EQE~--lvN~L~Kqm~~l~~eKr~Lq~~l~~~-~s~--~~s~~d~~~~~~~~Dt~e~~~sh- 230 (310)
T PF09755_consen 157 ELERLRREKVDLENTLEQEQEA--LVNRLWKQMDKLEAEKRRLQEKLEQP-VSA--PPSPRDTVNVSEENDTAERLSSH- 230 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccc-cCC--CCCcchHHhhcccCCchhHHHHH-
Confidence 3444444444454433333222 14567999999999999999999985 543 111110 1113445554422111
Q ss_pred HHhhhhHHHHHHHHHHHHHhHHhHH
Q 007791 295 EERRLLQAEMQRLKDKLAISERTAK 319 (589)
Q Consensus 295 EERR~lQgEmQ~LrDKLAiaERtAK 319 (589)
=+.|..|..|||..|+-+++.-.
T Consensus 231 --I~~Lr~EV~RLR~qL~~sq~e~~ 253 (310)
T PF09755_consen 231 --IRSLRQEVSRLRQQLAASQQEHS 253 (310)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH
Confidence 23578899999999998876443
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.09 E-value=17 Score=43.33 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHH-------------HHHHHHHHHHHhhhccCCCC--
Q 007791 59 DKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAA-------------QYAAEATLRRVHANLKDDDS-- 123 (589)
Q Consensus 59 dKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAA-------------QfAAEATLRRVHa~QKDdd~-- 123 (589)
.+-+.+|.+++..+...+...+..|+.....+.++..+...+-+- --..+..|.++-+.+..-..
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~ 822 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR 822 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 345666677777777777766666666666666666666555111 11223344444333332222
Q ss_pred --CchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHH
Q 007791 124 --VPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQE 201 (589)
Q Consensus 124 --~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqE 201 (589)
--|+.-|..++.++...+.+|..+|.....+.+-.+.=..-+.+.+..--..-.......+++.+=.+|..+++-|.+
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 236677777778888887777777877776665433332222222222111111222555666666666666666665
Q ss_pred HhHHH
Q 007791 202 ENRIL 206 (589)
Q Consensus 202 ENkiL 206 (589)
+.+=+
T Consensus 903 ~~~~~ 907 (1311)
T TIGR00606 903 EIKDA 907 (1311)
T ss_pred HHHHH
Confidence 54443
No 23
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.52 E-value=6.3 Score=44.70 Aligned_cols=92 Identities=27% Similarity=0.324 Sum_probs=53.6
Q ss_pred hhccchhhHhhHHHHHHHhhhhHHHHHHHh----hh-hHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH-----------
Q 007791 129 VLAPLEADIKTYKKEIAALQEDKKALQRHT----KA-KEMALLEAEKILRSALERALIVEEVQNLNFEL----------- 192 (589)
Q Consensus 129 IiAPLEAeiK~~r~EIa~LQdDnkALeRlt----Ks-KEaALlEAeril~sAl~kA~iVedvQN~N~EL----------- 192 (589)
=..-||.||+..|.|+...+|....|+.-. +- ||. --|+| +|-+||. =+|.+|+-|
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~-~~~~e-~L~~aL~------amqdk~~~LE~sLsaEtriK 617 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKES-EKDTE-VLMSALS------AMQDKNQHLENSLSAETRIK 617 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHH-HHHHHHH------HHHHHHHHHHHhhhHHHHHH
Confidence 345688888888888888888887777644 21 331 01121 2333332 234444432
Q ss_pred ---HHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHH
Q 007791 193 ---KRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELE 228 (589)
Q Consensus 193 ---~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELE 228 (589)
..-+-...-+..|++...|+|=.||+-|.+.|.+|-
T Consensus 618 ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 618 LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333344455668888899999999998874
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.35 E-value=30 Score=43.83 Aligned_cols=208 Identities=25% Similarity=0.286 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHH
Q 007791 33 QLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLR 112 (589)
Q Consensus 33 ~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLR 112 (589)
...+.+++.-.++.||-.|+-.-+=.+..+.++..|..-.+.+++.++.-+.+-+=-+-||+-|||.- |..+|
T Consensus 923 ~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~l-------Ee~~~ 995 (1930)
T KOG0161|consen 923 KNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKEL-------EERIR 995 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 33445566666777777777777777777778888888888888888777777555677888888762 11222
Q ss_pred HHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Q 007791 113 RVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFEL 192 (589)
Q Consensus 113 RVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL 192 (589)
. +...|+-.|...+-...-+++|-.+-.-|+...+-.....-|.|+..| .|+-.+ -+.|....++
T Consensus 996 ~------------l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~r-kle~el--~~~~e~~~~~ 1060 (1930)
T KOG0161|consen 996 E------------LQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKR-KLEGEL--KDLQESIEEL 1060 (1930)
T ss_pred H------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHhhhHHHHH
Confidence 2 112233344444444444455444444444444444444444443322 222222 3444444444
Q ss_pred HHHHHHHHHHhHH--------------HHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHH
Q 007791 193 KRQIEICQEENRI--------------LEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTL 258 (589)
Q Consensus 193 ~kQiEIcqEENki--------------LeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtL 258 (589)
+.|++-.+.+.+= +...-.|.--.|..|...|.+|+|..=+.- |+.--+.++.++|-.+...|
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er---~~r~K~ek~r~dL~~ele~l 1137 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER---ASRAKAERQRRDLSEELEEL 1137 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4444444433221 111122223345566666666666665543 33334556666666666666
Q ss_pred HHHHhhh
Q 007791 259 ERELARV 265 (589)
Q Consensus 259 eRELARa 265 (589)
..+|.-+
T Consensus 1138 ~~~Lee~ 1144 (1930)
T KOG0161|consen 1138 KEELEEQ 1144 (1930)
T ss_pred HHHHHHH
Confidence 6666554
No 25
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.26 E-value=7.2 Score=43.54 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhH
Q 007791 166 LEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENR 204 (589)
Q Consensus 166 lEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENk 204 (589)
+++|..++ -|.||+.|.|+..|+-|+..++
T Consensus 192 ld~Etllr---------~d~~n~~q~Lleel~f~~~~h~ 221 (546)
T KOG0977|consen 192 LDDETLLR---------VDLQNRVQTLLEELAFLKRIHK 221 (546)
T ss_pred HHHHHHHH---------HHHHhHHHHHHHHHHHHHhccH
Confidence 56666666 4789999999999988886554
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.80 E-value=26 Score=41.60 Aligned_cols=151 Identities=20% Similarity=0.300 Sum_probs=91.7
Q ss_pred CCCchhHhhhhhHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccc
Q 007791 19 HPDPVVLELNRLQNQLKE---KDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTG 95 (589)
Q Consensus 19 ~sDPv~~ELnRLeN~lre---KdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~ 95 (589)
+-+|++-++.+|++..++ -+++|+..+.+ |...+..-+.-+.++..++..+.+-+..++..... ...+++.
T Consensus 240 ~~~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e---~~~~~~~ 313 (1201)
T PF12128_consen 240 GFEKVRPEFDKLQQQYRQLQALEQQLCHLHAE---LNADEQQLEQEQPELKEELNELNEELEKLEDEIKE---LRDELNK 313 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 446677666666665433 23344443333 33444455555566666666666665555555444 3345566
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 007791 96 EKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSA 175 (589)
Q Consensus 96 EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sA 175 (589)
++-.+-+.-...+.-|..++.-..+=+---|+.+++.++ .+..++.++..|+....+|..-...=++..-....-|..+
T Consensus 314 ~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~-~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~ 392 (1201)
T PF12128_consen 314 ELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVD-QLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEA 392 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666667778888887777666666888888874 4678888888888888887665555444444443344433
Q ss_pred H
Q 007791 176 L 176 (589)
Q Consensus 176 l 176 (589)
+
T Consensus 393 ~ 393 (1201)
T PF12128_consen 393 F 393 (1201)
T ss_pred H
Confidence 3
No 27
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.53 E-value=21 Score=39.99 Aligned_cols=200 Identities=26% Similarity=0.379 Sum_probs=117.1
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhh---hhcccccccccc------
Q 007791 24 VLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNV---LEHRNLEIKKVT------ 94 (589)
Q Consensus 24 ~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~l---le~KNLEiKkl~------ 94 (589)
.-||..|+.+|.+...++....++|+.|..+-..-..-+++...+...+.+.+++-+.. |....--|.||+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 44677778888888888888888888888777766666777777777666666655544 333222224443
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHH--------------HHHHHhhhhHHHHHHHhhh
Q 007791 95 GEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYK--------------KEIAALQEDKKALQRHTKA 160 (589)
Q Consensus 95 ~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r--------------~EIa~LQdDnkALeRltKs 160 (589)
.+|...|+.|.- ..=+||..++...+ ++|..++..-+++.--.+.
T Consensus 407 ~~rl~~L~~qWe---------------------~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~ 465 (594)
T PF05667_consen 407 EQRLVELAQQWE---------------------KHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQ 465 (594)
T ss_pred HHHHHHHHHHHH---------------------HHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555542 22234444443333 3444555555555555555
Q ss_pred hHHHHHH-----------------HHHHHHHHHHHHHhHHHHhhhhHHHHHHHH---HHH-HHhHHHHHhhhhhHHHHHH
Q 007791 161 KEMALLE-----------------AEKILRSALERALIVEEVQNLNFELKRQIE---ICQ-EENRILEKTNRQKVLEVEK 219 (589)
Q Consensus 161 KEaALlE-----------------Aeril~sAl~kA~iVedvQN~N~EL~kQiE---Icq-EENkiLeK~hRQKV~EVEK 219 (589)
||--.-. -.||+. ||--+.-|+.|+-|=+. ..| |=|.|=.|.+|+-..==|.
T Consensus 466 Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlE-------Iv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEl 538 (594)
T PF05667_consen 466 KEELYKQLVKELEKLPKDVNRSAYTRRILE-------IVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDEL 538 (594)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5543222 123332 66666666666554321 223 3356667888876544333
Q ss_pred H----------------HhhHH----HHHHHHHhccchhhhHHHHHHHHHHH
Q 007791 220 L----------------SGTIK----ELEEAVLAGGSAANAIRDYQRQITEL 251 (589)
Q Consensus 220 L----------------sqTi~----ELEEaiLAgGaaANAvrdYqrq~~el 251 (589)
| =.+|+ +|=+.|..+|..-+-+||+..||...
T Consensus 539 ifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e 590 (594)
T PF05667_consen 539 IFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDTE 590 (594)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 33343 45667889999999999999999754
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.49 E-value=27 Score=41.96 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=62.5
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccch
Q 007791 24 VLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGE 96 (589)
Q Consensus 24 ~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~E 96 (589)
+++- .+.+++++.++|+..-+.||..|..-.+.-++.++++...+..+++....++..+--+++||-.|.+.
T Consensus 654 ~~~~-s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~ 725 (1074)
T KOG0250|consen 654 VDEF-SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT 725 (1074)
T ss_pred ccch-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4443 47899999999999999999999999999999999999999999999999999888888887766654
No 29
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.23 E-value=31 Score=41.17 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHH
Q 007791 194 RQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAV 231 (589)
Q Consensus 194 kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEai 231 (589)
+|++-|+.+...+...--+--.+++.++..|..|...|
T Consensus 970 ~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel 1007 (1311)
T TIGR00606 970 DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655554333334445555555555554443
No 30
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.62 E-value=4.5 Score=40.83 Aligned_cols=50 Identities=28% Similarity=0.447 Sum_probs=37.3
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 007791 23 VVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKI 72 (589)
Q Consensus 23 v~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~ 72 (589)
+-.++.||+-........|..+++|+.+++-.=.-++.+++.|.+++..+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~ 64 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQL 64 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788899988888888999999999888766666666666655544433
No 31
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.72 E-value=18 Score=35.49 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=12.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007791 25 LELNRLQNQLKEKDRELADAQGEIKAL 51 (589)
Q Consensus 25 ~ELnRLeN~lreKdRELg~A~aEIKaL 51 (589)
-||..|..+|.+--.+-+..+.++..|
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 345555555554444444444444443
No 32
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.67 E-value=26 Score=42.69 Aligned_cols=110 Identities=29% Similarity=0.310 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 007791 97 KKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSAL 176 (589)
Q Consensus 97 kK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl 176 (589)
-+.++.+|.+|.+ +.+-.++-|+..|...+.+...||+..+||-.+ +.- .+.
T Consensus 449 ~~~~~~~~~~~~~---------------~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~---------~~k----e~~ 500 (1317)
T KOG0612|consen 449 EKEKLDEKCQAVA---------------ELEEMDKELEETIEKLKSEESELQREQKALLQH---------EQK----EVE 500 (1317)
T ss_pred HhhhHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhh----HHH
Confidence 4566777777777 445555556666666666666666533332111 111 111
Q ss_pred HHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccch
Q 007791 177 ERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSA 237 (589)
Q Consensus 177 ~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaa 237 (589)
+ ++...-++.+.|..++--.++|-+++.+-+.+=-.+.+|+.++-++||++.+-.-+.
T Consensus 501 e---k~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e 558 (1317)
T KOG0612|consen 501 E---KLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAE 558 (1317)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh
Confidence 1 233334445555555555555555555555566667778888888888877765543
No 33
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.64 E-value=39 Score=39.28 Aligned_cols=80 Identities=24% Similarity=0.283 Sum_probs=52.0
Q ss_pred HhhhhhHHHHHHHHHHHHHH-------------HHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhh----ccc
Q 007791 25 LELNRLQNQLKEKDRELADA-------------QGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLE----HRN 87 (589)
Q Consensus 25 ~ELnRLeN~lreKdRELg~A-------------~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle----~KN 87 (589)
..+++|++.+-.++.+...+ -+..++|...-.-||--|.+|-..|.++..-+-.+.+-+. ..+
T Consensus 190 ~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~ 269 (775)
T PF10174_consen 190 ARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRD 269 (775)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 46789999999999888554 2445567776677888888877777766666655544333 234
Q ss_pred cccccccchhHHHHHHH
Q 007791 88 LEIKKVTGEKKDALAAQ 104 (589)
Q Consensus 88 LEiKkl~~EkK~AlAAQ 104 (589)
-.+|.+...+-.+++.-
T Consensus 270 ~~~k~le~~~s~~~~mK 286 (775)
T PF10174_consen 270 RLDKQLEVYKSHSLAMK 286 (775)
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 44555666665555543
No 34
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.56 E-value=0.076 Score=58.32 Aligned_cols=129 Identities=22% Similarity=0.345 Sum_probs=0.0
Q ss_pred hccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHh
Q 007791 130 LAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKT 209 (589)
Q Consensus 130 iAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~ 209 (589)
+..|+..+..+..++..|+.+..++......-...+-+++..+++--....-+.+....+.+|..++.-+.... .+.|+
T Consensus 173 ~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~-~i~k~ 251 (722)
T PF05557_consen 173 LSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDA-EINKE 251 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHH-HHHHH
Confidence 33444444444455555555555555555555555566666655433333334455566666666555444432 22333
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 007791 210 NRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVK 266 (589)
Q Consensus 210 hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaK 266 (589)
.+..|..|-.|..+...|-. -..-.|..+.-+.=|.||+++|++-|.++.
T Consensus 252 l~~ql~~i~~LE~en~~l~~-------Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E 301 (722)
T PF05557_consen 252 LKEQLAHIRELEKENRRLRE-------ELKHLRQSQENVELLEEEKRSLQRKLERLE 301 (722)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334433333333333321 222334444444444455555544444433
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.36 E-value=35 Score=38.36 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=46.3
Q ss_pred chhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhh
Q 007791 133 LEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQ 212 (589)
Q Consensus 133 LEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQ 212 (589)
|+..|.....|-..|+.-+..|+.=..+-..-+-..+..|+..-+ -.+.++.+++++....+...+|+..|..-+=.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~e---e~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEE---EMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666655555555443333333333333333333 25556666666666666666677666544333
Q ss_pred hHHHHHHHHhhHHH
Q 007791 213 KVLEVEKLSGTIKE 226 (589)
Q Consensus 213 KV~EVEKLsqTi~E 226 (589)
....|..|.+.|..
T Consensus 218 ~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 218 ARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.36 E-value=52 Score=40.27 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=59.6
Q ss_pred HHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHh
Q 007791 184 EVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELA 263 (589)
Q Consensus 184 dvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELA 263 (589)
+.-++=.+.+-++.+.+.|-+||.++|-+=+--|+.|..++....+..-= -.+++.+.--.+..++.|.+..+-+|.
T Consensus 490 ~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e---~~~~l~~~k~~l~~~k~e~~~~~k~l~ 566 (1293)
T KOG0996|consen 490 PLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKE---KKTELDDLKEELPSLKQELKEKEKELP 566 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence 34456678889999999999999999988777777777776664444322 245677777788888888888888877
Q ss_pred hhh
Q 007791 264 RVK 266 (589)
Q Consensus 264 RaK 266 (589)
..+
T Consensus 567 ~~~ 569 (1293)
T KOG0996|consen 567 KLR 569 (1293)
T ss_pred HHH
Confidence 654
No 37
>PRK09039 hypothetical protein; Validated
Probab=90.07 E-value=25 Score=36.45 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhh
Q 007791 30 LQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLR 77 (589)
Q Consensus 30 LeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~ 77 (589)
|..++-.++.+|...+++|..|=..-.+..-.-..|..+|..+...+.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567788888888888888888655555555555566666665555555
No 38
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.37 E-value=59 Score=39.46 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 007791 189 NFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVS 268 (589)
Q Consensus 189 N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVs 268 (589)
-.++.-+++-++++..-++ .++..+++.+..|++.+=+ .+...+.+++++..+...+.+++.++.--
T Consensus 884 le~ae~~l~~~~~e~~~~~-------~e~~~a~~~l~~l~e~l~~------~~eel~a~L~e~r~rL~~l~~el~~~~~~ 950 (1353)
T TIGR02680 884 AARAESDAREAAEDAAEAR-------AEAEEASLRLRTLEESVGA------MVDEIRARLAETRAALASGGRELPRLAEA 950 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444 3344444455555554311 14455556666666555555555433211
Q ss_pred cccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 007791 269 ANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLE 336 (589)
Q Consensus 269 aNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAKaEaQLkeKlklRLK~LE 336 (589)
++-+..++.++..++..++.....+....+-....++-|-
T Consensus 951 ----------------------------~~~a~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~e~~ 990 (1353)
T TIGR02680 951 ----------------------------LATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREFA 990 (1353)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112255666666666666655555555544444454444
No 39
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.44 E-value=5.4 Score=41.77 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=26.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007791 25 LELNRLQNQLKEKDRELADAQGEIKALRATEV 56 (589)
Q Consensus 25 ~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~ 56 (589)
-.-..|+.++.+.-..|.+|+.+||.||-+-+
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 34567888899999999999999999997643
No 40
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.18 E-value=51 Score=36.13 Aligned_cols=100 Identities=20% Similarity=0.319 Sum_probs=58.3
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHH
Q 007791 24 VLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAA 103 (589)
Q Consensus 24 ~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAA 103 (589)
.-|+-+++..+++...++..-+.+||.+...-.-=+.++-+.-..+.+++.++..++..|+. |+..+ -+.+.-||-
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~--l~~q~--r~qr~~La~ 119 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA--LEVQE--REQRRRLAE 119 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH--HHHHH--HHHHHHHHH
Confidence 33455555555555555566666666666555555555555555556665555555555443 33333 455556666
Q ss_pred HHHHHHHHHHHhhhccCCCCCchhhhhccchhh
Q 007791 104 QYAAEATLRRVHANLKDDDSVPIESVLAPLEAD 136 (589)
Q Consensus 104 QfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAe 136 (589)
|-+| .|.--..||+--++.|=++.
T Consensus 120 ~L~A---------~~r~g~~p~~~ll~~~eda~ 143 (420)
T COG4942 120 QLAA---------LQRSGRNPPPALLVSPEDAQ 143 (420)
T ss_pred HHHH---------HHhccCCCCchhhcChhhhh
Confidence 6543 45555668888888887765
No 41
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.94 E-value=62 Score=36.86 Aligned_cols=225 Identities=21% Similarity=0.241 Sum_probs=128.7
Q ss_pred CCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHhhhhhhhhhhhHhhhhccccccccccc
Q 007791 19 HPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKA---IEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTG 95 (589)
Q Consensus 19 ~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKA---veEl~~el~K~deKL~~~E~lle~KNLEiKkl~~ 95 (589)
++--.-=.|++|..++.+|+-|+..-++++..|+..-.+..=- |+...-|..+++.-|--+...++.--=++..++.
T Consensus 288 k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 288 KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333344678888889999999999999999988776665432 3334444445544444444444332222222222
Q ss_pred ---hhHHH---HHHHHH---HHHHHHHHhhhccCCCCCch----------hhhhccchhhHhhHHHHHHHhhhhHHHHHH
Q 007791 96 ---EKKDA---LAAQYA---AEATLRRVHANLKDDDSVPI----------ESVLAPLEADIKTYKKEIAALQEDKKALQR 156 (589)
Q Consensus 96 ---EkK~A---lAAQfA---AEATLRRVHa~QKDdd~~Pi----------EaIiAPLEAeiK~~r~EIa~LQdDnkALeR 156 (589)
....+ +.++|+ -.-+|+ +--.+++....|- +.|.-||...+.-...+|..-+.++-.|+-
T Consensus 368 ~~~~~f~~le~~~~~~~~l~~~i~l~-~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~ 446 (581)
T KOG0995|consen 368 EIEDFFKELEKKFIDLNSLIRRIKLG-IAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQE 446 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 222222 122222 3445666333333 235566666666666778888888888999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccc
Q 007791 157 HTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGS 236 (589)
Q Consensus 157 ltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGa 236 (589)
+..-+.+-.-|--++++.-..++..+++. +++.|+. .+||- +---.|+|+|-..+..|...+.
T Consensus 447 ~~~~~~~~i~E~~~~l~~~~~el~~~~~~----~~~~k~e--~eee~-------~k~~~E~e~le~~l~~l~l~~~---- 509 (581)
T KOG0995|consen 447 HFSNKASTIEEKIQILGEIELELKKAESK----YELKKEE--AEEEW-------KKCRKEIEKLEEELLNLKLVLN---- 509 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH--HHHHH-------HHHHHHHHHHHHHHHHHHHHHH----
Confidence 99999998899999999888888888776 3333332 23322 1222466665555555444332
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccc
Q 007791 237 AANAIRDYQRQITELNEEKRTLERELARVKVSAN 270 (589)
Q Consensus 237 aANAvrdYqrq~~elnEEkrtLeRELARaKVsaN 270 (589)
.++.+..+.-+..+.||+|+.++.|
T Consensus 510 ---------~~m~~a~~~v~s~e~el~~~~~~~~ 534 (581)
T KOG0995|consen 510 ---------TSMKEAEELVKSIELELDRMVATGE 534 (581)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344445555556666666655544
No 42
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.92 E-value=38 Score=35.78 Aligned_cols=136 Identities=22% Similarity=0.349 Sum_probs=79.6
Q ss_pred cchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhh
Q 007791 132 PLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNR 211 (589)
Q Consensus 132 PLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hR 211 (589)
-|..|++.+|+.+..+|-|+|.|--=...-.+-.-+-+ +-...-+|.-+| .|+|-.++.+.-|+.
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~-~~~~~~ere~lV-----------~qLEk~~~q~~qLe~--- 147 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG-ARHFPHEREDLV-----------EQLEKLREQIEQLER--- 147 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc-ccccchHHHHHH-----------HHHHHHHHHHHHHHH---
Confidence 37788999999999999999887531111111110000 000012233223 333333333333322
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhccchhhhHHH-HHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccchh
Q 007791 212 QKVLEVEKLSGTIKELEEAVLAGGSAANAIRD-YQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPV 290 (589)
Q Consensus 212 QKV~EVEKLsqTi~ELEEaiLAgGaaANAvrd-Yqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPV 290 (589)
-+-..+.|.||.+- =|| |+.+++.||.|.--+ + | .+.-++.-|
T Consensus 148 -------d~qs~lDEkeEl~~--------ERD~yk~K~~RLN~ELn~~-----------------L-~---g~~~rivDI 191 (319)
T PF09789_consen 148 -------DLQSLLDEKEELVT--------ERDAYKCKAHRLNHELNYI-----------------L-N---GDENRIVDI 191 (319)
T ss_pred -------HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-----------------h-C---CCCCCcccH
Confidence 24455666777653 343 888999998876321 1 2 222366678
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhHHhH
Q 007791 291 RQWLEERRLLQAEMQRLKDKLAISERTA 318 (589)
Q Consensus 291 KqWLEERR~lQgEmQ~LrDKLAiaERtA 318 (589)
---+.|=|+|+..++++-.-..++-.|.
T Consensus 192 DaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 192 DALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998888776664
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.72 E-value=20 Score=36.32 Aligned_cols=54 Identities=26% Similarity=0.324 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhh
Q 007791 211 RQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARV 265 (589)
Q Consensus 211 RQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARa 265 (589)
+|==.+|-+++.-+.-+|+.. +++...+..++|++.++.+++...+|+.||+++
T Consensus 62 ~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l 115 (239)
T COG1579 62 SQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777788888889988 889999999999999999999999999999875
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.64 E-value=34 Score=33.57 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=60.8
Q ss_pred CchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHH------HHHHHHH----H-HHhHHHHhhhhHHH
Q 007791 124 VPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEK------ILRSALE----R-ALIVEEVQNLNFEL 192 (589)
Q Consensus 124 ~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAer------il~sAl~----k-A~iVedvQN~N~EL 192 (589)
+|...+-.-++.+|.-+|+.|..+.-++..|+--...=...+-+... ..+..++ . -.-+|+.--.+.+|
T Consensus 43 ~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~l 122 (312)
T PF00038_consen 43 EEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDL 122 (312)
T ss_dssp ---HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHH
Confidence 44444555567777777776666666555444322222222222111 1111111 1 12344444556678
Q ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHHHHh--hHHHHHHHHHhccchhhhHHHHHHHHHH
Q 007791 193 KRQIEICQEENRILEKTNRQKVLEVEKLSG--TIKELEEAVLAGGSAANAIRDYQRQITE 250 (589)
Q Consensus 193 ~kQiEIcqEENkiLeK~hRQKV~EVEKLsq--Ti~ELEEaiLAgGaaANAvrdYqrq~~e 250 (589)
..+|+..++|-.+|.+.|-+.|.++..-.+ +..+... -.+..-++|+++.+.+...
T Consensus 123 e~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~--~~~~dL~~~L~eiR~~ye~ 180 (312)
T PF00038_consen 123 ENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ--FRSSDLSAALREIRAQYEE 180 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecc--cccccchhhhhhHHHHHHH
Confidence 888999999999999999986666544222 1112211 2234456777765555443
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.04 E-value=1e+02 Score=38.40 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=59.1
Q ss_pred HHHHHHHhhHHHHHHHHHhcc-------chhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCcc
Q 007791 215 LEVEKLSGTIKELEEAVLAGG-------SAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKV 287 (589)
Q Consensus 215 ~EVEKLsqTi~ELEEaiLAgG-------aaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKv 287 (589)
.++..+.+-|..|+.|==-.| ..-+-+..|..+++++..+...|+++|..++-......... +.---..++|
T Consensus 411 ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~-~~l~~~~Gkv 489 (1486)
T PRK04863 411 TRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAY-QLVRKIAGEV 489 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCc
Confidence 344555666666666644444 23467788999999999999999999887765543322211 1122234455
Q ss_pred chhHHHHH---------HhhhhHHHHHHHHHHHHHhHH
Q 007791 288 MPVRQWLE---------ERRLLQAEMQRLKDKLAISER 316 (589)
Q Consensus 288 MPVKqWLE---------ERR~lQgEmQ~LrDKLAiaER 316 (589)
-|-.-|=- +=+.+-+-.++||-+|+=.|+
T Consensus 490 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 527 (1486)
T PRK04863 490 SRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQ 527 (1486)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 55444422 223344556667777766666
No 46
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.87 E-value=39 Score=38.05 Aligned_cols=95 Identities=24% Similarity=0.174 Sum_probs=55.4
Q ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhh-------hhHhhhhcccccccccc
Q 007791 22 PVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLR-------VTQNVLEHRNLEIKKVT 94 (589)
Q Consensus 22 Pv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~-------~~E~lle~KNLEiKkl~ 94 (589)
-+-.||..+-..|.+-.++.+.++-||+.|+..=.-=.+=+++....+.-..+++. -++.-+..-+-.||.+.
T Consensus 89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 34678999999999998888888888887765322111222333223332333333 33333444445677778
Q ss_pred chhHHHHHHHHHHHHHHHHHhh
Q 007791 95 GEKKDALAAQYAAEATLRRVHA 116 (589)
Q Consensus 95 ~EkK~AlAAQfAAEATLRRVHa 116 (589)
+|.+..-+=.+=-...|-|+|.
T Consensus 169 ~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 169 DELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH
Confidence 8877765555555555555553
No 47
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.77 E-value=6.2 Score=38.64 Aligned_cols=75 Identities=15% Similarity=0.269 Sum_probs=52.1
Q ss_pred CCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHH
Q 007791 122 DSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQE 201 (589)
Q Consensus 122 d~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqE 201 (589)
+.||.-..+.-||.++...+.+++.++.+.. +|.... ...+. .....+.+|.++|++|..|++..+.
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~~~--~~~~~l--------~~~~~---~~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNNIDNTWN--QRTAEM--------QQKVA---QSDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHH--------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888899999999988888876643 111111 11111 1344577799999999999999999
Q ss_pred HhHHHHHh
Q 007791 202 ENRILEKT 209 (589)
Q Consensus 202 ENkiLeK~ 209 (589)
|+..|+-.
T Consensus 154 ~~~~l~~~ 161 (206)
T PRK10884 154 KVDAANLQ 161 (206)
T ss_pred HHHHHHHH
Confidence 98887543
No 48
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.75 E-value=54 Score=39.62 Aligned_cols=187 Identities=21% Similarity=0.251 Sum_probs=110.0
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHh-hhhccccccccccchhHHHH
Q 007791 23 VVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQN-VLEHRNLEIKKVTGEKKDAL 101 (589)
Q Consensus 23 v~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~-lle~KNLEiKkl~~EkK~Al 101 (589)
...|+.+|++++.+..+++.++...|+.++-..+....=++.+...+.+..-.+.-+++ . +.+-+++-+++++...-+
T Consensus 666 le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~-e~~~~~~~~~~~l~~ei~ 744 (1074)
T KOG0250|consen 666 LEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTA-EEKQVDISKLEDLAREIK 744 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhcchhhhHHHHHHHH
Confidence 45678888888888888888888888888877777777777777777777777777777 4 555566666666554433
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHH----HHHHHhhhhHHH-------------HH---------
Q 007791 102 AAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYK----KEIAALQEDKKA-------------LQ--------- 155 (589)
Q Consensus 102 AAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r----~EIa~LQdDnkA-------------Le--------- 155 (589)
--.-.-+.- +--.-+--+.+--|+.=.-|+++..-.++ .||.+|++..-. ..
T Consensus 745 ~~~~eIe~~--~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~ 822 (1074)
T KOG0250|consen 745 KKEKEIEEK--EAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLKS 822 (1074)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 221111110 00000000111112222233333332222 233333222111 11
Q ss_pred --HHhhhhHHHHHHHHHHHHHHHHHHHh---------------HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhh
Q 007791 156 --RHTKAKEMALLEAEKILRSALERALI---------------VEEVQNLNFELKRQIEICQEENRILEKTNRQ 212 (589)
Q Consensus 156 --RltKsKEaALlEAeril~sAl~kA~i---------------VedvQN~N~EL~kQiEIcqEENkiLeK~hRQ 212 (589)
--++.+|+-+..-+..++....+|.+ |+++-+.+.-|+.||+-|.+=+--+.-+|++
T Consensus 823 ~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~ 896 (1074)
T KOG0250|consen 823 RLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELEELHRG 896 (1074)
T ss_pred hhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 12345677777777777877777764 4788888888899998888888778888877
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.95 E-value=60 Score=34.12 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=54.9
Q ss_pred hccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHh
Q 007791 130 LAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKT 209 (589)
Q Consensus 130 iAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~ 209 (589)
|.+.+..+..+..+|..|+.+.+.|+... .+.+.+.+..-+...-+.++.+.-.+++..|+-|..+++-
T Consensus 294 ~~~~~~~~~~l~d~i~~l~~~l~~l~~~i-------~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~---- 362 (562)
T PHA02562 294 ISEGPDRITKIKDKLKELQHSLEKLDTAI-------DELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKK---- 362 (562)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 33334555555556666666655554433 2222222222222222334444444444444444443332
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHH
Q 007791 210 NRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTL 258 (589)
Q Consensus 210 hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtL 258 (589)
-=.+|++|...+.++++-+ +...+-+.+.+....++..++...
T Consensus 363 ---l~~ei~~l~~~~~~~~~~l---~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 363 ---VKAAIEELQAEFVDNAEEL---AKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred ---HHHHHHHHHhhhhchHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345666666666655552 345556666677777776666554
No 50
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=83.85 E-value=1.4e+02 Score=38.19 Aligned_cols=64 Identities=25% Similarity=0.292 Sum_probs=48.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHH
Q 007791 47 EIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRR 113 (589)
Q Consensus 47 EIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRR 113 (589)
||..|.---..++..++||..++..+.++ ...+|++.|.++.-++++=+....++-.-++.++=
T Consensus 1315 ei~~Lk~el~~ke~~~~el~~~~~~~q~~---~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e 1378 (1822)
T KOG4674|consen 1315 EISRLKEELEEKENLIAELKKELNRLQEK---IKKQLDELNNEKANLTKELEQLEDLKTRLAAALSE 1378 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655558889999999999988844 45778888888888888877777777766666654
No 51
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.66 E-value=76 Score=35.08 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccc
Q 007791 43 DAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRN 87 (589)
Q Consensus 43 ~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KN 87 (589)
++..+|+.+...-.--..-+..+..++..+..++..++..+.+-+
T Consensus 213 ~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~G 257 (650)
T TIGR03185 213 ALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEG 257 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333333333344555555555555555555444433
No 52
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.21 E-value=53 Score=32.90 Aligned_cols=96 Identities=32% Similarity=0.480 Sum_probs=73.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHH
Q 007791 26 ELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQY 105 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQf 105 (589)
|+.=|--+|+|-.-|+..=-+||-+||.. +.+++.++...+..+..+..-+..|++|+....+|=....
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~q-------l~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~---- 79 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQ-------LRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK---- 79 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh----
Confidence 56778889999999999999999999984 4478888888888888889999999999987776632211
Q ss_pred HHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHh
Q 007791 106 AAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAAL 147 (589)
Q Consensus 106 AAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~L 147 (589)
.|+.+-| --+.+||+||...|.+.+.+
T Consensus 80 -~Ea~lLr--------------ekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 80 -NEAELLR--------------EKLGQLEAELAELREELACA 106 (202)
T ss_pred -CHHHHhh--------------hhhhhhHHHHHHHHHHHHhh
Confidence 2333322 12778888888888777775
No 53
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.08 E-value=95 Score=35.72 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=16.6
Q ss_pred CCccchhHHHHHHhhhhH---HHHHHHH
Q 007791 284 NDKVMPVRQWLEERRLLQ---AEMQRLK 308 (589)
Q Consensus 284 nDKvMPVKqWLEERR~lQ---gEmQ~Lr 308 (589)
.+.+--++.|++..+.+. ++++.+|
T Consensus 565 e~~~~~l~~~~~~~~~~~~~~~~l~~~r 592 (908)
T COG0419 565 EDRLQELKELLEELRLLRTRKEELEELR 592 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677777777777 7776666
No 54
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.03 E-value=1.2e+02 Score=36.92 Aligned_cols=74 Identities=12% Similarity=0.021 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 007791 189 NFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVS 268 (589)
Q Consensus 189 N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVs 268 (589)
-.+|..+|+.|+.+-.-+.+=. ..+...+..+++++...+........-+....+.+....++.+||+...|-
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el-------~~~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~ 995 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGREL-------PRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREFALTGLL 995 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 4555555555554433322222 222223333333333333333333333444455556667777888877774
Q ss_pred c
Q 007791 269 A 269 (589)
Q Consensus 269 a 269 (589)
.
T Consensus 996 ~ 996 (1353)
T TIGR02680 996 E 996 (1353)
T ss_pred c
Confidence 4
No 55
>PRK01156 chromosome segregation protein; Provisional
Probab=81.98 E-value=97 Score=35.09 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=19.5
Q ss_pred hccchhhHhhHHHHHHHhhhhHHHHHHHhhh
Q 007791 130 LAPLEADIKTYKKEIAALQEDKKALQRHTKA 160 (589)
Q Consensus 130 iAPLEAeiK~~r~EIa~LQdDnkALeRltKs 160 (589)
+-+|+.+|+.+..++..|.++.+-+.-+-+.
T Consensus 524 ~~~l~~~l~~~~~~l~~le~~~~~~~~l~~~ 554 (895)
T PRK01156 524 IESARADLEDIKIKINELKDKHDKYEEIKNR 554 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777666665544443
No 56
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.72 E-value=1.4e+02 Score=36.56 Aligned_cols=128 Identities=21% Similarity=0.281 Sum_probs=69.4
Q ss_pred chhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHh-hhhHHH---HHHHHHHHHHhHHHHH
Q 007791 133 LEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQ-NLNFEL---KRQIEICQEENRILEK 208 (589)
Q Consensus 133 LEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQ-N~N~EL---~kQiEIcqEENkiLeK 208 (589)
|+.+|..++.+...+-..-..|.+=+--=++.+.-++..+..+++.--...+.| -.|-++ ..-+++|.-|+...+-
T Consensus 827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l 906 (1174)
T KOG0933|consen 827 LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGEL 906 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccc
Confidence 445555555555555555555555444455666666666666555443333333 234444 6778999998877653
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHH---------Hh--------ccch----hhhHHHHHHHHHHHHHHHhHHHH
Q 007791 209 TNRQKVLEVEKLSGTIKELEEAV---------LA--------GGSA----ANAIRDYQRQITELNEEKRTLER 260 (589)
Q Consensus 209 ~hRQKV~EVEKLsqTi~ELEEai---------LA--------gGaa----ANAvrdYqrq~~elnEEkrtLeR 260 (589)
--.-++-||.++.+.=....-.| |. +|.. -+-++..+.++++|++-+-+|+|
T Consensus 907 ~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k 979 (1174)
T KOG0933|consen 907 ERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEK 979 (1174)
T ss_pred hHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHh
Confidence 32233445555543322111110 11 1111 23345558899999999999987
No 57
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=81.48 E-value=55 Score=31.91 Aligned_cols=172 Identities=26% Similarity=0.344 Sum_probs=106.7
Q ss_pred hccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHhHHHHhhhhHHHHHHHHHHHHHhHHHH
Q 007791 130 LAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALE--RALIVEEVQNLNFELKRQIEICQEENRILE 207 (589)
Q Consensus 130 iAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~--kA~iVedvQN~N~EL~kQiEIcqEENkiLe 207 (589)
|.-|..+|.-...+|..|.-+|+.|.++-+--+.||--.|+. .+-|- .+..-+||.+ |+.++--+|+-++-++
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~-e~~Lpqll~~h~eEvr~----Lr~~LR~~q~~~r~~~ 88 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDT-EAELPQLLQRHNEEVRV----LRERLRKSQEQERELE 88 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999999999655443 22222 2455566655 4455555778888888
Q ss_pred HhhhhhHHHHHHHHhhHHHHHHHHHhccch-----hhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhccccc
Q 007791 208 KTNRQKVLEVEKLSGTIKELEEAVLAGGSA-----ANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKD 282 (589)
Q Consensus 208 K~hRQKV~EVEKLsqTi~ELEEaiLAgGaa-----ANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD 282 (589)
+..|.+=.++.++..++..|...+-..+-+ ..=+.+-+..+++-.....+|++.|.-+-=+.+|-..+ |
T Consensus 89 ~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~---e--- 162 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLAS---E--- 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---H---
Confidence 888888888888888888888876544433 12222333333333444455666554443333332211 1
Q ss_pred CCCccchhHHHHHHhhhhHHHHHHHHHHHHHhHH
Q 007791 283 ENDKVMPVRQWLEERRLLQAEMQRLKDKLAISER 316 (589)
Q Consensus 283 ~nDKvMPVKqWLEERR~lQgEmQ~LrDKLAiaER 316 (589)
+-| +..--.+=..|+-|++.|..||.--||
T Consensus 163 -~kK---~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 163 -KKK---HKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred -HHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 122222334577777777777766554
No 58
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.67 E-value=1.1e+02 Score=34.70 Aligned_cols=79 Identities=35% Similarity=0.525 Sum_probs=45.9
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccch------hhhhcccccCCC
Q 007791 212 QKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVA------TVVANEWKDEND 285 (589)
Q Consensus 212 QKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA------~vvANEWKD~nD 285 (589)
+|+.+|..+-+.+.++++-| +... +..+.|..|+.+..=.+||-+ -+|.|==|-..|
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~----------~~Ke-------e~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~e 506 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEI----------RQKE-------ELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEE 506 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHH
Confidence 55666666666666665432 2222 333445555555555555544 456676555443
Q ss_pred ccchhHHHHHHhhhhHHHHHHHHHHH
Q 007791 286 KVMPVRQWLEERRLLQAEMQRLKDKL 311 (589)
Q Consensus 286 KvMPVKqWLEERR~lQgEmQ~LrDKL 311 (589)
+-.-|..=|-||-||..|-+||
T Consensus 507 ----I~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 507 ----IEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Confidence 2334566667999999888887
No 59
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=80.00 E-value=9.3 Score=37.03 Aligned_cols=50 Identities=36% Similarity=0.559 Sum_probs=44.1
Q ss_pred HHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccch
Q 007791 214 VLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVA 273 (589)
Q Consensus 214 V~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA 273 (589)
=.+-.++...|.+||.-|+ .+|++.+.|.+++.+.+.|++|.++++|.+=
T Consensus 123 ~~~~~~~e~~i~~Le~ki~----------el~~~~~~~~~~ke~~~~ei~~lks~~~~l~ 172 (190)
T PF05266_consen 123 EAELKELESEIKELEMKIL----------ELQRQAAKLKEKKEAKDKEISRLKSEAEALK 172 (190)
T ss_pred HHhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788999999999887 8999999999999999999999999998753
No 60
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.93 E-value=5.4 Score=39.76 Aligned_cols=68 Identities=24% Similarity=0.403 Sum_probs=54.2
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhccc
Q 007791 210 NRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEW 280 (589)
Q Consensus 210 hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEW 280 (589)
-|.|+.+.+|+...|..=.+.+ -.-...+.||......|+.||.-+..||.-..--.|-+=+++..-|
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~---e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~ 73 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESL---ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999988876544433 3344889999999999999999999999999888888766654333
No 61
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.76 E-value=54 Score=30.13 Aligned_cols=107 Identities=25% Similarity=0.357 Sum_probs=70.6
Q ss_pred chhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhH
Q 007791 125 PIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENR 204 (589)
Q Consensus 125 PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENk 204 (589)
|=-.++--|.+.|+....||+.||+... ||+..++.+--|.=+.....-+. .....+...|..++.-.+....
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~---~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELA---RLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777654 44455555544433333333222 3333445677788888887777
Q ss_pred HHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHH
Q 007791 205 ILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITEL 251 (589)
Q Consensus 205 iLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~el 251 (589)
-+=-|-=.|.-+||.|-.-|..|-+. |+.||++|
T Consensus 86 t~LellGEK~E~veEL~~Dv~DlK~m-------------yr~Qi~~l 119 (120)
T PF12325_consen 86 TLLELLGEKSEEVEELRADVQDLKEM-------------YREQIDQL 119 (120)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHH-------------HHHHHHHh
Confidence 77778889999999999998888653 77777765
No 62
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=78.62 E-value=6.2 Score=37.57 Aligned_cols=49 Identities=33% Similarity=0.423 Sum_probs=42.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHH
Q 007791 183 EEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAV 231 (589)
Q Consensus 183 edvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEai 231 (589)
.++++.=..+...|+-|+-|--.|-..++-||..+|+|+.-|.||.|-|
T Consensus 57 ~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel 105 (146)
T PF05852_consen 57 CEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEEL 105 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677899999999999999999999999999999999987754
No 63
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=78.10 E-value=12 Score=42.74 Aligned_cols=71 Identities=31% Similarity=0.503 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHHHHhHHhHHHH
Q 007791 242 RDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTAKAE 321 (589)
Q Consensus 242 rdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAKaE 321 (589)
-..+.||.+|.||.|++--|+--|+-- .+|..|--+|.-| .|||-.-||||. +-||-
T Consensus 353 ~Klee~i~elEEElk~~k~ea~~ar~~-----------~~~~e~ddiPmAq---RkRFTRvEMaRV-----LMeRN---- 409 (832)
T KOG2077|consen 353 LKLEEKIRELEEELKKAKAEAEDARQK-----------AKDDEDDDIPMAQ---RKRFTRVEMARV-----LMERN---- 409 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hcccccccccHHH---HhhhHHHHHHHH-----HHHHh----
Confidence 345566666667777665555433222 3444444458876 689999999985 34443
Q ss_pred HHHHHHHHHHHHHHHhhhC
Q 007791 322 AQLKEKLKLRLKTLEEGLK 340 (589)
Q Consensus 322 aQLkeKlklRLK~LEE~Lk 340 (589)
-||-||-.|+|.+|
T Consensus 410 -----qYKErLMELqEavr 423 (832)
T KOG2077|consen 410 -----QYKERLMELQEAVR 423 (832)
T ss_pred -----HHHHHHHHHHHHHh
Confidence 36778888888876
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=77.30 E-value=2.7 Score=46.58 Aligned_cols=134 Identities=24% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhh
Q 007791 51 LRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVL 130 (589)
Q Consensus 51 Lr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIi 130 (589)
++..+.+.. +|.+|+.+---+-++++.+...+.+..-.+..|..++..+.+--.-+++.+. .....+
T Consensus 335 ~~sPe~l~~-~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~------------~~~~~~ 401 (722)
T PF05557_consen 335 FDSPEDLAR-ALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLE------------ALKKLI 401 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
Confidence 344444443 3445555555555566666665555555555555555433221111111111 123345
Q ss_pred ccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHhHHHHhhhhHHHHHHHHHHHHH
Q 007791 131 APLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKI-LRSALERALIVEEVQNLNFELKRQIEICQEE 202 (589)
Q Consensus 131 APLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeri-l~sAl~kA~iVedvQN~N~EL~kQiEIcqEE 202 (589)
+-||...-+...|+.-|..--+++|- |-+-...... -+..-.-+.+++++++.+.++..+|+-+.++
T Consensus 402 ~RLerq~~L~~kE~d~LR~~L~syd~-----e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~ 469 (722)
T PF05557_consen 402 RRLERQKALATKERDYLRAQLKSYDK-----EETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEE 469 (722)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-----hhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666665554444432 2222221110 0111235567788888777777766555544
No 65
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.90 E-value=36 Score=33.17 Aligned_cols=96 Identities=30% Similarity=0.410 Sum_probs=55.0
Q ss_pred hHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHH
Q 007791 139 TYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVE 218 (589)
Q Consensus 139 ~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVE 218 (589)
.|..+|..-..+.|-..|. +....|-..=+.|+.--...-...++++.|..|+.+++-.|.+|+-|++ |++
T Consensus 58 qY~~~i~~AKkqRk~~~~~--~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~-------e~~ 128 (161)
T TIGR02894 58 QYEEAIELAKKQRKELKRE--AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEK-------ELE 128 (161)
T ss_pred HHHHHHHHHHHHHhccccC--cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 4555555544444433322 1223334444444433333345667788888888888888888887775 355
Q ss_pred HHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHh
Q 007791 219 KLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKR 256 (589)
Q Consensus 219 KLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkr 256 (589)
+|.+.+..++| ||+-=++-|+.-++
T Consensus 129 ~L~~~~~~~~e-------------DY~~L~~Im~RARk 153 (161)
T TIGR02894 129 KLRQRLSTIEE-------------DYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 66555555554 67777766665554
No 66
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.36 E-value=1.3e+02 Score=34.87 Aligned_cols=46 Identities=33% Similarity=0.435 Sum_probs=30.5
Q ss_pred hhhhHhhhhccccccccccchhHHHHHHHHHH----HHHHHHHhhhccCC
Q 007791 76 LRVTQNVLEHRNLEIKKVTGEKKDALAAQYAA----EATLRRVHANLKDD 121 (589)
Q Consensus 76 L~~~E~lle~KNLEiKkl~~EkK~AlAAQfAA----EATLRRVHa~QKDd 121 (589)
|.+-|++--.+++.++-=|+--+|||||-|=| +-+|++|-.--.+.
T Consensus 322 LsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~ 371 (652)
T COG2433 322 LSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPEL 371 (652)
T ss_pred CCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33333333445677888889999999987755 55777777655544
No 67
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=75.86 E-value=73 Score=30.13 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=62.6
Q ss_pred chhhHhhHHHHHHHhhhhHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 007791 133 LEADIKTYKKEIAALQEDKKALQR----HTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEK 208 (589)
Q Consensus 133 LEAeiK~~r~EIa~LQdDnkALeR----ltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK 208 (589)
.+.++|..+++-+.|+|---+|+| .-..++.+.++||.--...-.-=.-++.|-.....|.-....|-.|+..|++
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999888887 4567888888888765554444444555666667778888999999999999
Q ss_pred hhhhhH
Q 007791 209 TNRQKV 214 (589)
Q Consensus 209 ~hRQKV 214 (589)
+--++-
T Consensus 88 ~lq~~q 93 (140)
T PF10473_consen 88 ELQKKQ 93 (140)
T ss_pred HHHHHH
Confidence 865553
No 68
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=75.80 E-value=17 Score=38.75 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=26.0
Q ss_pred hhhhhccchhhHhhHHHHHHHhhhhHHHHHHHh
Q 007791 126 IESVLAPLEADIKTYKKEIAALQEDKKALQRHT 158 (589)
Q Consensus 126 iEaIiAPLEAeiK~~r~EIa~LQdDnkALeRlt 158 (589)
...-|+.|+.+|+.++.+++.+++...|++.-.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778899999999999999999888776443
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.41 E-value=20 Score=36.44 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=40.6
Q ss_pred hhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHH
Q 007791 78 VTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRH 157 (589)
Q Consensus 78 ~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRl 157 (589)
-++..|++.+-+|..++.+|...++..-.|+..+...+. --+.||..|++.-++|+.+
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~----------------------~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRG----------------------WTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------------CCHHHHHHHHHHHHHHHHH
Confidence 455556666667777777777777777766665543221 1346888888888888887
Q ss_pred hh
Q 007791 158 TK 159 (589)
Q Consensus 158 tK 159 (589)
|-
T Consensus 292 ~g 293 (325)
T PF08317_consen 292 TG 293 (325)
T ss_pred HC
Confidence 74
No 70
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=74.02 E-value=37 Score=39.92 Aligned_cols=98 Identities=30% Similarity=0.337 Sum_probs=67.3
Q ss_pred hccchhhHhhHHHHHHHhh--------------hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-HHHHhhhhHHHHH
Q 007791 130 LAPLEADIKTYKKEIAALQ--------------EDKKALQRHTKAKEMALLEAEKILRSALERALI-VEEVQNLNFELKR 194 (589)
Q Consensus 130 iAPLEAeiK~~r~EIa~LQ--------------dDnkALeRltKsKEaALlEAeril~sAl~kA~i-VedvQN~N~EL~k 194 (589)
=--|+.+++........|| |+||-|-.+.+-|+--|++-.++...-..|--| |++.--+=+-++=
T Consensus 436 N~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~ 515 (861)
T PF15254_consen 436 NMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQF 515 (861)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555555555555555 999999999999999999888876655444433 3333223334555
Q ss_pred HHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHH
Q 007791 195 QIEICQEENRILEKTNRQKVLEVEKLSGTIKEL 227 (589)
Q Consensus 195 QiEIcqEENkiLeK~hRQKV~EVEKLsqTi~EL 227 (589)
-.|...-||+||.-+-||+=+||++|-.-.+-|
T Consensus 516 kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~L 548 (861)
T PF15254_consen 516 KLEASEKENQILGITLRQRDAEIERLRELTRTL 548 (861)
T ss_pred hHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 678888899999999999999999876544444
No 71
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.90 E-value=20 Score=32.99 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=43.5
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHhhhhhhhhhhhHh
Q 007791 24 VLELNRLQNQLKEKDRELADAQGEIKALRATE--VLKDKAIEELRNEFGKIDGKLRVTQN 81 (589)
Q Consensus 24 ~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE--~lkdKAveEl~~el~K~deKL~~~E~ 81 (589)
-.++..|++++.+...+.....+|++.|+.+- .--...|++|..++..+..||..+..
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777777888888888888888877532 33456688899999999999887765
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=73.84 E-value=2.5e+02 Score=35.30 Aligned_cols=21 Identities=48% Similarity=0.536 Sum_probs=15.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 007791 315 ERTAKAEAQLKEKLKLRLKTLE 336 (589)
Q Consensus 315 ERtAKaEaQLkeKlklRLK~LE 336 (589)
+|+++.=.|-++||+ |||-||
T Consensus 1696 ~eA~~Ll~~a~~kl~-~l~dLe 1716 (1758)
T KOG0994|consen 1696 TEAEKLLGQANEKLD-RLKDLE 1716 (1758)
T ss_pred HHHHHHHHHHHHHHH-HHHHHH
Confidence 466777777778876 577777
No 73
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.64 E-value=14 Score=30.92 Aligned_cols=56 Identities=29% Similarity=0.410 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhh
Q 007791 28 NRLQNQLKEKDRELADAQGEIKA--------------LRATEVLKDKAIEELRNEFGKIDGKLRVTQNVL 83 (589)
Q Consensus 28 nRLeN~lreKdRELg~A~aEIKa--------------Lr~tE~lkdKAveEl~~el~K~deKL~~~E~ll 83 (589)
+.|++.|++||-.+..-..|-.. ||....--++.+.+|...+.+++.++..++..|
T Consensus 1 ~sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 1 SSLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788899999888777766544 444444444555555555555544444444433
No 74
>PRK11281 hypothetical protein; Provisional
Probab=73.14 E-value=2.3e+02 Score=34.57 Aligned_cols=166 Identities=19% Similarity=0.219 Sum_probs=81.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHh-ccchhhhHHHHHHHHHHHHHHH--hHH
Q 007791 182 VEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLA-GGSAANAIRDYQRQITELNEEK--RTL 258 (589)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLA-gGaaANAvrdYqrq~~elnEEk--rtL 258 (589)
+-+....|..|-.++...-+...-|..-+++=-.-.+.++||.+-+.|-|=. +|..+=. |-.+.|.+.|=+-. +-|
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~-~~l~~q~~~LP~~~~~~~l 358 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLS-RILYQQQQALPSADLIEGL 358 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHhCCCCcccchH
Confidence 3344456777777766655555555555555556678899999999887622 2222211 11112222221111 223
Q ss_pred HHHHhhhhhcc----------cc----chhhhhcccccCCCccc-hhHHHHHHhhhh-HHHHHHHHHHHHHhHHhHHHHH
Q 007791 259 ERELARVKVSA----------NR----VATVVANEWKDENDKVM-PVRQWLEERRLL-QAEMQRLKDKLAISERTAKAEA 322 (589)
Q Consensus 259 eRELARaKVsa----------NR----VA~vvANEWKD~nDKvM-PVKqWLEERR~l-QgEmQ~LrDKLAiaERtAKaEa 322 (589)
..++|.+.+.- +- +....+++=..-++.+. ....-|..||-| ..=+++|-.-|..+-.---+..
T Consensus 359 ~~~iAdlrl~~f~~~q~~~~l~~~~~y~~~l~~~~~~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~q~ 438 (1113)
T PRK11281 359 ADRIADLRLEQFEINQQRDALFQPDAYIDKLEAGHKSEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQ 438 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222111 11 11111111111111111 122456666654 4446777777766665555667
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCCC
Q 007791 323 QLKEKLKLRLKTLEEGLKHVSSFSGS 348 (589)
Q Consensus 323 QLkeKlklRLK~LEE~Lk~~~s~s~~ 348 (589)
||.+...-==.+|.+.+==.+|+.+-
T Consensus 439 Ql~~~~~~l~~~L~~~lfWv~s~~pi 464 (1113)
T PRK11281 439 QLLSVSDSLQSTLTQQIFWVNSNKPM 464 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCc
Confidence 77776654445666766666555554
No 75
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=72.45 E-value=1.7e+02 Score=32.74 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhcc
Q 007791 218 EKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSA 269 (589)
Q Consensus 218 EKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsa 269 (589)
+.|...+.+++..+.......--.+..+|++.-..+--.+|=.=+..+++..
T Consensus 355 ~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 355 SQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777766666666666666666655555444444344444443
No 76
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=72.40 E-value=32 Score=29.90 Aligned_cols=69 Identities=22% Similarity=0.378 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHH
Q 007791 192 LKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLER 260 (589)
Q Consensus 192 L~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeR 260 (589)
+.-++++..++.++|++||+-=...+.++.+.+..|+-.+=.--.--+.+..|-.||..+-+.-..||-
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999999999999888888888888887776665555667788888888887777777763
No 77
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.26 E-value=2.4e+02 Score=34.57 Aligned_cols=179 Identities=23% Similarity=0.332 Sum_probs=119.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHH
Q 007791 26 ELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQY 105 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQf 105 (589)
.|+..|-+++..++||.+...||+.|..+-.- +.-|..+|.-.-.+|.+.++.+++-
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~~~~k----f~~l~~ql~l~~~~l~l~~~r~~~~------------------- 734 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEAQSQK----FRDLKQQLELKLHELALLEKRLEQN------------------- 734 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC-------------------
Confidence 57888999999999999999999998776542 3445555544444555555544431
Q ss_pred HHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHhHHH
Q 007791 106 AAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSAL-ERALIVEE 184 (589)
Q Consensus 106 AAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl-~kA~iVed 184 (589)
+-+| +-++++.++.+|..++..-+..++..|..+.+..--|+-+.-|- .|-.=+.|
T Consensus 735 ----e~~~-------------------~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkd 791 (1174)
T KOG0933|consen 735 ----EFHK-------------------LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKD 791 (1174)
T ss_pred ----hHhh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHH
Confidence 1111 23456777777888888888888888888877766666555443 23444556
Q ss_pred HhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhh
Q 007791 185 VQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELAR 264 (589)
Q Consensus 185 vQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELAR 264 (589)
+++.=..++.++ ++.-+.++| +..|++.|.-++.+|+-. ++-|++|.+.+...-++|++|+.-
T Consensus 792 l~keik~~k~~~---e~~~~~~ek----~~~e~e~l~lE~e~l~~e----------~~~~k~~l~~~~~~~~~l~~e~~~ 854 (1174)
T KOG0933|consen 792 LEKEIKTAKQRA---EESSKELEK----RENEYERLQLEHEELEKE----------ISSLKQQLEQLEKQISSLKSELGN 854 (1174)
T ss_pred HHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444433 455666665 345777777777777754 577899999999999999999875
Q ss_pred hhh
Q 007791 265 VKV 267 (589)
Q Consensus 265 aKV 267 (589)
..+
T Consensus 855 l~~ 857 (1174)
T KOG0933|consen 855 LEA 857 (1174)
T ss_pred HHH
Confidence 543
No 78
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.07 E-value=2.6e+02 Score=34.77 Aligned_cols=225 Identities=21% Similarity=0.243 Sum_probs=113.6
Q ss_pred HHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHH-HHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhH
Q 007791 62 IEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALA-AQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTY 140 (589)
Q Consensus 62 veEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlA-AQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~ 140 (589)
|+++-.+|..+.+...--++.+..--=|.+.|...|-.||. .+-=.|.+.-+-|.-|. +|.-.-+.|-.+
T Consensus 269 I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~---------~~~~~~~ki~~~ 339 (1293)
T KOG0996|consen 269 IEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQY---------ILYESRAKIAEM 339 (1293)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 66777777777777776666666655666777777777765 23334555434333332 333333444445
Q ss_pred HHHHHHhhhhHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhH---
Q 007791 141 KKEIAALQEDKKALQRHTK---AKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKV--- 214 (589)
Q Consensus 141 r~EIa~LQdDnkALeRltK---sKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV--- 214 (589)
..++.++.++-+....=+. ..++...|+-+ +..-+++..+. --.+-|+++..=|+.-..+-=
T Consensus 340 ~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~--~~~~e~~~~~k----------n~~~~~k~~~~~~e~~~vk~~E~l 407 (1293)
T KOG0996|consen 340 QEELEKIEEGLKDENEKFDIESNEEVEKNEAVK--KEIKERAKELK----------NKFESLKKKFQDLEREDVKREEKL 407 (1293)
T ss_pred HHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHH--HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554443222 22233333221 12333444333 223333333332222111111
Q ss_pred ----HHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHH-------hHHHHHHhhhhhccccchhhhhcccccC
Q 007791 215 ----LEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEK-------RTLERELARVKVSANRVATVVANEWKDE 283 (589)
Q Consensus 215 ----~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEk-------rtLeRELARaKVsaNRVA~vvANEWKD~ 283 (589)
.-++||.. ++|++.---+.+-|+.-.|+++++++|.|. .++++||--.+.+.-+-+.-.-+|-.+-
T Consensus 408 K~~~~k~kKlek---e~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ 484 (1293)
T KOG0996|consen 408 KRLTSKIKKLEK---EIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKL 484 (1293)
T ss_pred HHHHHHHHHHHH---HHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 11222222 233333334555567777777777766654 4556666666666555555566677777
Q ss_pred CCccchhHHHHHHhhhhHHHHHHHHHHHHH
Q 007791 284 NDKVMPVRQWLEERRLLQAEMQRLKDKLAI 313 (589)
Q Consensus 284 nDKvMPVKqWLEERR~lQgEmQ~LrDKLAi 313 (589)
.+.+|| |+..=.-..||+|-..-.|-|
T Consensus 485 ekel~~---~~~~~n~~~~e~~vaesel~~ 511 (1293)
T KOG0996|consen 485 EKELMP---LLKQVNEARSELDVAESELDI 511 (1293)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 777777 665544455666554444433
No 79
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.97 E-value=2.7e+02 Score=34.08 Aligned_cols=162 Identities=23% Similarity=0.230 Sum_probs=104.6
Q ss_pred CchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHH
Q 007791 21 DPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDA 100 (589)
Q Consensus 21 DPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~A 100 (589)
+|+-.||--|+-..+..++-+...++=|..|+.--.--.|-||-+++...++ .++.+++.. .+=++.++-.+|..+-
T Consensus 177 l~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~-~~Ie~l~~k--~~~v~y~~~~~ey~~~ 253 (1072)
T KOG0979|consen 177 LQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKK-SKIELLEKK--KKWVEYKKHDREYNAY 253 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh--ccccchHhhhHHHHHH
Confidence 3556677777777777777777777777766543333334444444333322 233333332 3458899999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH
Q 007791 101 LAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKAL-QRHTKAKEMALLEAEKILRSALERA 179 (589)
Q Consensus 101 lAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkAL-eRltKsKEaALlEAeril~sAl~kA 179 (589)
+.|---|-+.+|-+ +.+.-||+.-+-|||.+++..+.+|...+.+-.+- .+.-.. .|-.+.. =
T Consensus 254 k~~~~r~k~~~r~l-----~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~-----~ek~~~~------~ 317 (1072)
T KOG0979|consen 254 KQAKDRAKKELRKL-----EKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEK-----FEKLKEI------E 317 (1072)
T ss_pred HHHHHHHHHHHHHH-----HHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH------H
Confidence 99999999999986 56677999999999999999999999998875432 222211 1111111 2
Q ss_pred HhHHHHhhhhHHHHHHHHHHHH
Q 007791 180 LIVEEVQNLNFELKRQIEICQE 201 (589)
Q Consensus 180 ~iVedvQN~N~EL~kQiEIcqE 201 (589)
-.|+..+|+|..|+++-+--|.
T Consensus 318 ~~v~~~~~~le~lk~~~~~rq~ 339 (1072)
T KOG0979|consen 318 DEVEEKKNKLESLKKAAEKRQK 339 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777666554433
No 80
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.80 E-value=1.8e+02 Score=31.95 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=60.8
Q ss_pred chhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH---HHHH-HhHHHHhhhhHHHHHHHHHHH
Q 007791 125 PIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSA---LERA-LIVEEVQNLNFELKRQIEICQ 200 (589)
Q Consensus 125 PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sA---l~kA-~iVedvQN~N~EL~kQiEIcq 200 (589)
-|-..+.+|..||...+.+|..|++.-....-..-+=+.-|..+..-|..+ ..++ ...+++...-+++....+.+.
T Consensus 306 ~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak 385 (522)
T PF05701_consen 306 SLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAK 385 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777766554444333333333333333222 2222 244555555555555555554
Q ss_pred HHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhH
Q 007791 201 EENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAI 241 (589)
Q Consensus 201 EENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAv 241 (589)
.+.....-=.+.--.|+|.....|...|.-+.+.---++|+
T Consensus 386 ~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaa 426 (522)
T PF05701_consen 386 KEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAA 426 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333322223333566666666666666665544444443
No 81
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.64 E-value=32 Score=35.63 Aligned_cols=116 Identities=25% Similarity=0.259 Sum_probs=74.5
Q ss_pred CchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhH
Q 007791 21 DPVVLELNRLQNQLKEKDRELADAQGEIKALRATE--VLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKK 98 (589)
Q Consensus 21 DPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE--~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK 98 (589)
|+++-+|-...+.|+..-..|-....||...-.+| ++| ..+.++-.++...-.++...+..|...+..|...+++|-
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS 249 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666777777777777777776544433 233 233333444444444555566667777788888888887
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhh
Q 007791 99 DALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTK 159 (589)
Q Consensus 99 ~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltK 159 (589)
.-...-.+||..+...+. .-+.||..|++.-++|+.+|-
T Consensus 250 e~~~~I~~ae~~~~~~r~----------------------~t~~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 250 ELNTEIAEAEKKLEQCRG----------------------FTFKEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHhcCC----------------------CCHHHHHHHHHHHHHHHHHhC
Confidence 777777777765543322 235688888888888888763
No 82
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.38 E-value=1.3e+02 Score=30.08 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhccc
Q 007791 243 DYQRQITELNEEKRTLERELARVKVSAN 270 (589)
Q Consensus 243 dYqrq~~elnEEkrtLeRELARaKVsaN 270 (589)
+.++++.++..+...++.+|+.++...+
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666666554433
No 83
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=69.31 E-value=38 Score=37.12 Aligned_cols=102 Identities=27% Similarity=0.404 Sum_probs=77.9
Q ss_pred ccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhh
Q 007791 131 APLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTN 210 (589)
Q Consensus 131 APLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~h 210 (589)
--|+..++..-+||+..+.+-.+|++-.+.|+..|-=|.--+. |--..=-||-|- |..+
T Consensus 288 ~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle---------------~Rt~RPnvELCr------D~AQ 346 (421)
T KOG2685|consen 288 NKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLE---------------NRTYRPNVELCR------DQAQ 346 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHH---------------HcccCCchHHHH------hHHH
Confidence 4578888999999999999999999999999999987765543 111222344453 2334
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHh
Q 007791 211 RQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELA 263 (589)
Q Consensus 211 RQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELA 263 (589)
--=+.||+.|..||.-|.+-+ +.-+.-++-|-.-+..||++||
T Consensus 347 ~~L~~EV~~l~~t~~~L~~kL----------~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 347 YRLVDEVHELDDTVAALKEKL----------DEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999998754 5557777888888999999997
No 84
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.17 E-value=95 Score=28.60 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=22.4
Q ss_pred chhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHH
Q 007791 133 LEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILR 173 (589)
Q Consensus 133 LEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~ 173 (589)
++.++....+.++.|++.-..+++.....+.-+..-.....
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~ 119 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQ 119 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666666666666655555555555554444444333
No 85
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=69.17 E-value=48 Score=31.90 Aligned_cols=113 Identities=25% Similarity=0.366 Sum_probs=70.2
Q ss_pred hHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh-HHHHHHHHH-HHHHhHHHHHhhhhhHHH
Q 007791 139 TYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLN-FELKRQIEI-CQEENRILEKTNRQKVLE 216 (589)
Q Consensus 139 ~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N-~EL~kQiEI-cqEENkiLeK~hRQKV~E 216 (589)
..|.++..||+.-..+=.=..+++..+-.. .+++=++= -||=+||-| |-|---+|.+....-+.-
T Consensus 30 ~tR~dVi~L~e~Ld~~L~~~~ar~~gIcpv-------------r~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~ 96 (189)
T PF10211_consen 30 ATRQDVIQLQEWLDKMLQQRQARETGICPV-------------REELYSQCFDELIRQVTIDCPERGLLLLRVRDEYRMT 96 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccHH-------------HHHHHHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHH
Confidence 357788888874322111123334333222 23333322 388999999 999999999987664443
Q ss_pred HHHHHhhHHHHHHHHHhccchh-----hhHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 007791 217 VEKLSGTIKELEEAVLAGGSAA-----NAIRDYQRQITELNEEKRTLERELARVKVS 268 (589)
Q Consensus 217 VEKLsqTi~ELEEaiLAgGaaA-----NAvrdYqrq~~elnEEkrtLeRELARaKVs 268 (589)
+ ..+..|-++-++-|.-- ....+|+.++..|..++..|+.+++..+..
T Consensus 97 l----~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 97 L----DAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33455556555544322 125588999999999999999998876543
No 86
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.07 E-value=47 Score=36.06 Aligned_cols=91 Identities=30% Similarity=0.367 Sum_probs=63.3
Q ss_pred HHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHh
Q 007791 177 ERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKR 256 (589)
Q Consensus 177 ~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkr 256 (589)
++--=-+.+|-+|+.|+.|.=-.++ ++-||. .+.-+|..+|+.++|-=-.--. -+.+|+++.-|+.||-.
T Consensus 96 e~q~e~~qL~~qnqkL~nqL~~~~~---vf~k~k----~~~q~LE~li~~~~EEn~~lql---qL~~l~~e~~Ekeeesq 165 (401)
T PF06785_consen 96 ERQQESEQLQSQNQKLKNQLFHVRE---VFMKTK----GDIQHLEGLIRHLREENQCLQL---QLDALQQECGEKEEESQ 165 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhc----chHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHhHhHHHHH
Confidence 3444456789999999999988887 555553 2345566677777664222111 25679999999999999
Q ss_pred HHHHHHhhhhhccccchhhhhcccc
Q 007791 257 TLERELARVKVSANRVATVVANEWK 281 (589)
Q Consensus 257 tLeRELARaKVsaNRVA~vvANEWK 281 (589)
+|-|||+-+- |+-++.+.|+.
T Consensus 166 ~LnrELaE~l----ayqq~L~~eyQ 186 (401)
T PF06785_consen 166 TLNRELAEAL----AYQQELNDEYQ 186 (401)
T ss_pred HHHHHHHHHH----HHHHHHHHHhh
Confidence 9999999875 44556655554
No 87
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=67.60 E-value=1.6e+02 Score=30.54 Aligned_cols=91 Identities=30% Similarity=0.406 Sum_probs=65.1
Q ss_pred HHHHHHhHHHHhhhhHHHHHHHHHHHHH----hHHHHHhhhhhH---HHHHHHHhhHHHHHHHHHhccchhhhHHHHHHH
Q 007791 175 ALERALIVEEVQNLNFELKRQIEICQEE----NRILEKTNRQKV---LEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQ 247 (589)
Q Consensus 175 Al~kA~iVedvQN~N~EL~kQiEIcqEE----NkiLeK~hRQKV---~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq 247 (589)
.|..|.-|..+.-.-.+|+.|+.+|-+= ...|.|+|---. .|+|+++..|..||--..+-- .-.-.+..-
T Consensus 197 ~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k---~k~e~~n~~ 273 (309)
T PF09728_consen 197 LLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWK---SKWEKSNKA 273 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHH
Confidence 4555558888999999999999999743 345666664332 699999999999998765422 112234556
Q ss_pred HHHHHHHHhHHHHHHhhhhhc
Q 007791 248 ITELNEEKRTLERELARVKVS 268 (589)
Q Consensus 248 ~~elnEEkrtLeRELARaKVs 268 (589)
+-+|-+|+..++.++...+.-
T Consensus 274 l~~m~eer~~~~~~~~~~~~k 294 (309)
T PF09728_consen 274 LIEMAEERQKLEKELEKLKKK 294 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788889998888888776543
No 88
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=67.49 E-value=11 Score=34.94 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=46.1
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHH
Q 007791 52 RATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRR 113 (589)
Q Consensus 52 r~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRR 113 (589)
.+||.+|+++..+|...+..+|..|.-++-.....--++++.+..--+++..||..|..-|.
T Consensus 12 ivTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~ 73 (131)
T PF11068_consen 12 IVTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERL 73 (131)
T ss_dssp E--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Confidence 48999999999999999999988888777666655555666665666777788887766543
No 89
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.37 E-value=73 Score=36.70 Aligned_cols=206 Identities=21% Similarity=0.274 Sum_probs=97.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhcc--CCCCC--chhhhhccchh
Q 007791 60 KAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLK--DDDSV--PIESVLAPLEA 135 (589)
Q Consensus 60 KAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~QK--Ddd~~--PiEaIiAPLEA 135 (589)
||.-++...|.+++.++..+ ++ .+..+.=| +-.-.-+--.+.|+.+-..-. ++... |-.-.|.+.+.
T Consensus 352 kAY~~yk~kl~~vEr~~~~~-------g~-~~d~~rik-a~VIrG~~l~eal~~~~e~~~p~e~~~~~~~e~~ei~~~~~ 422 (652)
T COG2433 352 KAYLAYKPKLEKVERKLPEL-------GI-WKDVERIK-ALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEK 422 (652)
T ss_pred HHHHHHHHHHHHHHHhcccc-------cc-hhhHHHHH-HHeecCCcHHHHHHHHHhhhccccccccccccccchhHHHH
Confidence 45556666666666555543 22 12222111 111112222334555554444 22221 22345566666
Q ss_pred hHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHhHHHHhhhhHHHHHHHHHHHHHhHHHH-
Q 007791 136 DIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSAL-------ERALIVEEVQNLNFELKRQIEICQEENRILE- 207 (589)
Q Consensus 136 eiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl-------~kA~iVedvQN~N~EL~kQiEIcqEENkiLe- 207 (589)
+|+.++.-+..|+..|+.|++...-...-+-.-+.-|.++- -+-.=++-+++.+..|.+.++--..+-..|+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677777777776665554443333333333332 2223344455666666655544333333333
Q ss_pred ------Hhhh-------hhHHHHHHHHhh-HHHHHHHH-H-----------hccchhhhHHHHHHHHHHHHHHHhHHHHH
Q 007791 208 ------KTNR-------QKVLEVEKLSGT-IKELEEAV-L-----------AGGSAANAIRDYQRQITELNEEKRTLERE 261 (589)
Q Consensus 208 ------K~hR-------QKV~EVEKLsqT-i~ELEEai-L-----------AgGaaANAvrdYqrq~~elnEEkrtLeRE 261 (589)
||.+ -=|..|++||.+ |.++|+.. + +||.+.+|. ++=+++
T Consensus 503 ~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~gik~GDvi~v~~~sG~g~~~a~---------~li~~~----- 568 (652)
T COG2433 503 KLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDPSGGGARTAE---------ELIDKK----- 568 (652)
T ss_pred HHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHHhhccccCcEEEEEcCCCcchHhHH---------HHhccC-----
Confidence 2322 124566777754 66666543 2 233344441 111111
Q ss_pred HhhhhhccccchhhhhcccccCCCccch
Q 007791 262 LARVKVSANRVATVVANEWKDENDKVMP 289 (589)
Q Consensus 262 LARaKVsaNRVA~vvANEWKD~nDKvMP 289 (589)
-||=++.+-+-...|+++.+.+=.|.|
T Consensus 569 -~raii~~~~~s~~A~e~f~~~~iPv~~ 595 (652)
T COG2433 569 -PRAIIRGEEMSHAAAEEFFKNEIPVLP 595 (652)
T ss_pred -cceEEccCccchHHHHHHhhcCCceee
Confidence 134445555555566777776655555
No 90
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=66.92 E-value=67 Score=30.70 Aligned_cols=86 Identities=28% Similarity=0.340 Sum_probs=52.7
Q ss_pred CCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhh--hHHHHHHHHHHHHHHHHHH--HhHHHHhhhhHHHHH--HH
Q 007791 123 SVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKA--KEMALLEAEKILRSALERA--LIVEEVQNLNFELKR--QI 196 (589)
Q Consensus 123 ~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKs--KEaALlEAeril~sAl~kA--~iVedvQN~N~EL~k--Qi 196 (589)
+|+-..+.++||++.+.+-.++.++|.+-.++..=... +.-++.+... .-.+.. -.+.+.+-+.++..+ .+
T Consensus 39 ~~~~k~~~~~le~~f~~~~~~lq~~~~el~~~~~kL~~~~~~~~~~d~~k---~e~~~~~~~~~~~~~~k~~~~~~~~~~ 115 (170)
T COG2825 39 SPQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAK---AEAEIKKEKLVNAFNKKQQEYEKDLNR 115 (170)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447899999999999999999999998888765443 2222221111 111111 256666444444444 44
Q ss_pred HHHHHHhHHHHHhhh
Q 007791 197 EICQEENRILEKTNR 211 (589)
Q Consensus 197 EIcqEENkiLeK~hR 211 (589)
.--+++.++++++.|
T Consensus 116 ~~~e~~~~~~~~i~~ 130 (170)
T COG2825 116 REAEEEQKLLEKIQR 130 (170)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445677778777765
No 91
>PHA03161 hypothetical protein; Provisional
Probab=66.31 E-value=19 Score=34.71 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=40.5
Q ss_pred HHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHH
Q 007791 184 EVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAV 231 (589)
Q Consensus 184 dvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEai 231 (589)
+++|.=..|--+|+--+-|--+|-+.+|-||..+|+|+.-|.||.+-|
T Consensus 58 ~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel 105 (150)
T PHA03161 58 SIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDI 105 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666778888888999999999999999999999999997754
No 92
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=66.31 E-value=1.5e+02 Score=29.75 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=56.3
Q ss_pred cccchhhhhhcCCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhh
Q 007791 8 KLGGVEELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLR 77 (589)
Q Consensus 8 ~~gg~~e~~~~~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~ 77 (589)
|-+.+-+++-...||. .-|+--+||-+.+|..|...+-.+..+..+=++=++++.....|++++-.
T Consensus 11 ~~a~~~~~~dk~EDp~----~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~ 76 (225)
T COG1842 11 VKANINELLDKAEDPE----KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE 76 (225)
T ss_pred HHHHHHHHHHhhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777888998 56899999999999999999999999999999999999999999888744
No 93
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.66 E-value=2.6e+02 Score=32.33 Aligned_cols=9 Identities=11% Similarity=0.398 Sum_probs=4.9
Q ss_pred CCCCCchhh
Q 007791 120 DDDSVPIES 128 (589)
Q Consensus 120 Ddd~~PiEa 128 (589)
..+..|+=.
T Consensus 456 ~~~~CPvCg 464 (908)
T COG0419 456 AGEKCPVCG 464 (908)
T ss_pred CCCCCCCCC
Confidence 455566544
No 94
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=65.58 E-value=3.6e+02 Score=33.98 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=74.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHH
Q 007791 26 ELNRLQNQLKEKDRELADAQGEIKA---LRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALA 102 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aEIKa---Lr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlA 102 (589)
.+.|-+|++.+-.|--..|...-+. .+-.=++-|+|--+..+-+.-.|.-+..++.+|++ ++------|+++.-|
T Consensus 1540 di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~k--v~~~t~~aE~~~~~a 1617 (1758)
T KOG0994|consen 1540 DIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAK--VQEETAAAEKLATSA 1617 (1758)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3456666665554443333322211 11112223455555555566666666666666654 111111122333333
Q ss_pred HHHHHHHHH----HHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhh-----------HHHHHH
Q 007791 103 AQYAAEATL----RRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAK-----------EMALLE 167 (589)
Q Consensus 103 AQfAAEATL----RRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsK-----------EaALlE 167 (589)
+|-++|-.- =++.+.|.+.+-.-++-...-.-.+--.+++...-||++-++.++|...| |.-.-|
T Consensus 1618 ~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~e 1697 (1758)
T KOG0994|consen 1618 TQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTE 1697 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 333322110 12345566655555554444433444455666667888877777776554 222334
Q ss_pred HHHHHHHHHHHHHhHHHHh
Q 007791 168 AEKILRSALERALIVEEVQ 186 (589)
Q Consensus 168 Aeril~sAl~kA~iVedvQ 186 (589)
|+..+..|-++---+.||+
T Consensus 1698 A~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1698 AEKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445554544444444443
No 95
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=65.33 E-value=3.5e+02 Score=33.77 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=12.0
Q ss_pred HHHHHHhhhhhhhhhhhHhhhhcc
Q 007791 63 EELRNEFGKIDGKLRVTQNVLEHR 86 (589)
Q Consensus 63 eEl~~el~K~deKL~~~E~lle~K 86 (589)
.|..+.+....++++.+++++-++
T Consensus 497 ke~~ek~~~~~~~~~~l~~~~~~~ 520 (1317)
T KOG0612|consen 497 KEVEEKLSEEEAKKRKLEALVRQL 520 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555444
No 96
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=65.23 E-value=35 Score=31.30 Aligned_cols=47 Identities=34% Similarity=0.422 Sum_probs=36.9
Q ss_pred hcCCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007791 17 LAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELR 66 (589)
Q Consensus 17 ~~~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~ 66 (589)
..+..|-+-.+++|+..+|-++-|+...+.+|..|- +.|+.+-+|+.
T Consensus 8 ~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~---~~r~~l~~Eiv 54 (120)
T PF12325_consen 8 TSSGGPSVQLVERLQSQLRRLEGELASLQEELARLE---AERDELREEIV 54 (120)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 355677888899999999999999999999999884 34555555443
No 97
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=65.04 E-value=2.3e+02 Score=32.46 Aligned_cols=135 Identities=21% Similarity=0.233 Sum_probs=69.1
Q ss_pred cCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Q 007791 119 KDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEI 198 (589)
Q Consensus 119 KDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEI 198 (589)
-|++.||-+-.=+-++.-.-..-.+|+.|+..|.-|.--.++-+- +-++-.+++- --||+- +|. |+=+--+++|+-
T Consensus 248 ~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k-~s~~i~~l~e-k~r~l~-~D~-nk~~~~~~~mk~ 323 (622)
T COG5185 248 EDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMK-ISQKIKTLRE-KWRALK-SDS-NKYENYVNAMKQ 323 (622)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHh-hhH-HHHHHHHHHHHH
Confidence 345555555444444444445567899999998877654332111 1111111110 011211 221 333334445443
Q ss_pred HHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHH-------HHHHHHHHHHHhHHHHHHhhhhh
Q 007791 199 CQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDY-------QRQITELNEEKRTLERELARVKV 267 (589)
Q Consensus 199 cqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdY-------qrq~~elnEEkrtLeRELARaKV 267 (589)
--++. .--+++|+..|.+-||-|=|--+---.+|-- -.||.+||.||-.|.|||.+-+.
T Consensus 324 K~~~~----------~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~ 389 (622)
T COG5185 324 KSQEW----------PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINI 389 (622)
T ss_pred HHHhc----------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22221 1234555555655666554443333333321 14789999999999999987654
No 98
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.94 E-value=2.7e+02 Score=31.99 Aligned_cols=40 Identities=30% Similarity=0.322 Sum_probs=28.5
Q ss_pred hhhccc--cchhhhhcccccCCCccch-hHHHHHH--hhhhHHHH
Q 007791 265 VKVSAN--RVATVVANEWKDENDKVMP-VRQWLEE--RRLLQAEM 304 (589)
Q Consensus 265 aKVsaN--RVA~vvANEWKD~nDKvMP-VKqWLEE--RR~lQgEm 304 (589)
|..++| |++.-+|+.=-|-++.|-| ++-|+-+ ++|-+.++
T Consensus 395 ~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~ 439 (581)
T KOG0995|consen 395 AENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAEN 439 (581)
T ss_pred HHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 567788 8888899888899998875 5667654 33444443
No 99
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=63.67 E-value=25 Score=31.66 Aligned_cols=57 Identities=25% Similarity=0.412 Sum_probs=31.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhh
Q 007791 26 ELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNV 82 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~l 82 (589)
.+.||+..+.+++|+++.+++...+|...-+--..+.....+++.|+--.+.....+
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq 130 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQ 130 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666665555555555555566665555444444333
No 100
>PRK04863 mukB cell division protein MukB; Provisional
Probab=63.41 E-value=3.9e+02 Score=33.59 Aligned_cols=201 Identities=21% Similarity=0.287 Sum_probs=117.7
Q ss_pred hhhhccchhhHhhHHHHHHHhhh----hHHHHHHHhhhhHHHHHHHHHHHHH--------HH-------HHHHhHHHHhh
Q 007791 127 ESVLAPLEADIKTYKKEIAALQE----DKKALQRHTKAKEMALLEAEKILRS--------AL-------ERALIVEEVQN 187 (589)
Q Consensus 127 EaIiAPLEAeiK~~r~EIa~LQd----DnkALeRltKsKEaALlEAeril~s--------Al-------~kA~iVedvQN 187 (589)
+..+.=+++.+..+..++..|+. -+.+++.+.+....-+.+++++-++ +| ..|--+.-+++
T Consensus 441 e~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1486)
T PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRM 520 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHH
Confidence 44555556666666665554433 3444555555544444444433322 22 23444566777
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhh--hH-HHHHHHHhhHHHHHHHHHhccchhhhHHH----HHHHHHHHHHHHhHHHH
Q 007791 188 LNFELKRQIEICQEENRILEKTNRQ--KV-LEVEKLSGTIKELEEAVLAGGSAANAIRD----YQRQITELNEEKRTLER 260 (589)
Q Consensus 188 ~N~EL~kQiEIcqEENkiLeK~hRQ--KV-~EVEKLsqTi~ELEEaiLAgGaaANAvrd----Yqrq~~elnEEkrtLeR 260 (589)
+=-+|.+.++--|.=.++|.-.+.+ .. ...+-|-+.-.++|..+-.-+....-++. -++|.++|......|+
T Consensus 521 ~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~- 599 (1486)
T PRK04863 521 RLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA- 599 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 7888888888888888888877652 12 22455555556666655444333222221 2233333333333322
Q ss_pred HHhhhhhccccchhhhhcccccCCCccchhH----HHHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 007791 261 ELARVKVSANRVATVVANEWKDENDKVMPVR----QWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLE 336 (589)
Q Consensus 261 ELARaKVsaNRVA~vvANEWKD~nDKvMPVK----qWLEERR~lQgEmQ~LrDKLAiaERtAKaEaQLkeKlklRLK~LE 336 (589)
-.|-+|--..+.+.-+. +|++-..-+-.-||++-++. |.+ .+-+++++.+...|+
T Consensus 600 --------------~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~----~~~---~~~~~~~~~~~~~L~ 658 (1486)
T PRK04863 600 --------------ARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERE----REL---TVERDELAARKQALD 658 (1486)
T ss_pred --------------HhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHH
Confidence 24566999988887443 68998888889999987754 322 345678899999999
Q ss_pred hhhCCCCCCCCCC
Q 007791 337 EGLKHVSSFSGSP 349 (589)
Q Consensus 337 E~Lk~~~s~s~~~ 349 (589)
+.++..++....+
T Consensus 659 ~~i~~l~~~~~g~ 671 (1486)
T PRK04863 659 EEIERLSQPGGSE 671 (1486)
T ss_pred HHHHhhhccCCCc
Confidence 9999875544433
No 101
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=62.54 E-value=2.8e+02 Score=31.65 Aligned_cols=68 Identities=31% Similarity=0.431 Sum_probs=52.1
Q ss_pred hhhHhhHHHHHHHh-------hhhHHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHhHHHHh----------hhhHHH
Q 007791 134 EADIKTYKKEIAAL-------QEDKKALQRHTKAKEMALLEAEKILRS----ALERALIVEEVQ----------NLNFEL 192 (589)
Q Consensus 134 EAeiK~~r~EIa~L-------QdDnkALeRltKsKEaALlEAeril~s----Al~kA~iVedvQ----------N~N~EL 192 (589)
.+++...+.|+..| -.+|..|.+|...+|.-|.|.|+.|+. +-.++.|++++| .||.+|
T Consensus 86 q~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eL 165 (617)
T PF15070_consen 86 QAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNREL 165 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHH
Confidence 34445556665444 346788999999999999999988765 345678888888 489999
Q ss_pred HHHHHHHHH
Q 007791 193 KRQIEICQE 201 (589)
Q Consensus 193 ~kQiEIcqE 201 (589)
+.|+.-.|+
T Consensus 166 K~QL~Elq~ 174 (617)
T PF15070_consen 166 KEQLAELQD 174 (617)
T ss_pred HHHHHHHHH
Confidence 999988876
No 102
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.97 E-value=1.2e+02 Score=27.27 Aligned_cols=127 Identities=20% Similarity=0.283 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhc
Q 007791 39 RELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANL 118 (589)
Q Consensus 39 RELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~Q 118 (589)
.++...++||+.++....--...+..+.+++..+-......++-.++ -|.-...+=.+
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~--------------El~~Ha~~~~~-------- 60 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYER--------------ELVKHAEDIKE-------- 60 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHH--------
Confidence 34555566666666555555555556666666666555555443332 12222222222
Q ss_pred cCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HhHHHHhhhhHHHHHHHH
Q 007791 119 KDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERA-LIVEEVQNLNFELKRQIE 197 (589)
Q Consensus 119 KDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA-~iVedvQN~N~EL~kQiE 197 (589)
|.-|..++..++.+|..|+....+...-....+....+-+..|..-+.-+ .=++||..||.=|--|||
T Consensus 61 -----------L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 61 -----------LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23355667777788888887777777666777777666666666555433 236777777777777776
Q ss_pred H
Q 007791 198 I 198 (589)
Q Consensus 198 I 198 (589)
-
T Consensus 130 ~ 130 (132)
T PF07926_consen 130 S 130 (132)
T ss_pred h
Confidence 4
No 103
>PRK09039 hypothetical protein; Validated
Probab=61.75 E-value=2.1e+02 Score=29.92 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhH
Q 007791 188 LNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTI 224 (589)
Q Consensus 188 ~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi 224 (589)
+..+...||+-.+.+ |+..-=+||-+++.+...+
T Consensus 166 ~~~~~~~~i~~L~~~---L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 166 RDRESQAKIADLGRR---LNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHH
Confidence 334445555544322 2222223677777765544
No 104
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=61.68 E-value=2.6 Score=46.68 Aligned_cols=137 Identities=29% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHHHhHHHHHH
Q 007791 184 EVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGS-AANAIRDYQRQITELNEEKRTLEREL 262 (589)
Q Consensus 184 dvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGa-aANAvrdYqrq~~elnEEkrtLeREL 262 (589)
.+..+..+|.+||...++|+.-|- .|.+.|...+..++..+...+. .+-..-+++.|+..|.+|..-+|.-+
T Consensus 190 ~l~q~~~el~~~i~~L~~e~~~L~-------~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~ 262 (713)
T PF05622_consen 190 ELAQRCHELEKQISDLQEEKESLQ-------SENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQR 262 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhh-------hhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777655443 3556677777777744433322 22234577888888888877666555
Q ss_pred hhhhhccccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHHHH----hHHhHHHHHHH---HHH------HH
Q 007791 263 ARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAI----SERTAKAEAQL---KEK------LK 329 (589)
Q Consensus 263 ARaKVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKLAi----aERtAKaEaQL---keK------lk 329 (589)
.-.+..+-..-..+ .+++-.|+-++.. ..+.+.|||.+.+ |+|..|.|+.+ |+| |+
T Consensus 263 ~d~~~~~e~le~ei-~~L~q~~~eL~~~----------A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk 331 (713)
T PF05622_consen 263 DDLKIELEELEKEI-DELRQENEELQAE----------AREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLK 331 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54554443333333 5667667666553 3456666666655 56777777765 333 45
Q ss_pred HHHHHHHhh
Q 007791 330 LRLKTLEEG 338 (589)
Q Consensus 330 lRLK~LEE~ 338 (589)
.|++.||+.
T Consensus 332 ~qvk~Lee~ 340 (713)
T PF05622_consen 332 RQVKELEED 340 (713)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 666666664
No 105
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.53 E-value=1.9e+02 Score=32.67 Aligned_cols=117 Identities=29% Similarity=0.295 Sum_probs=78.8
Q ss_pred hHHHHhhhhHHHHHHHHHHHHH--hHHHHHhhhhhHHHHHHHH-hhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhH
Q 007791 181 IVEEVQNLNFELKRQIEICQEE--NRILEKTNRQKVLEVEKLS-GTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRT 257 (589)
Q Consensus 181 iVedvQN~N~EL~kQiEIcqEE--NkiLeK~hRQKV~EVEKLs-qTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrt 257 (589)
.+...+.+=.+|.+|+|-+.-= -|.|-=-.-+++.|+|--. ..|++||-.+.|-..-+| .-.+...+
T Consensus 301 ~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~----------~~eel~~~ 370 (521)
T KOG1937|consen 301 KLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE----------SNEELAEK 370 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHH
Confidence 3455666667888898876421 1222222346677777666 889999988876433222 11244556
Q ss_pred HHHHHhh------hhhccccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHH
Q 007791 258 LERELAR------VKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKL 311 (589)
Q Consensus 258 LeRELAR------aKVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKL 311 (589)
|--||.+ -|+|.-|+--.++|--|-+.|-+ .-|+++|-||-|...+-.+|
T Consensus 371 Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~----Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 371 LRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIV----KILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 6666543 68999999999999999888744 57999999999987765554
No 106
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=60.80 E-value=2.6e+02 Score=30.77 Aligned_cols=165 Identities=17% Similarity=0.272 Sum_probs=90.7
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhh-------hhhHhhhhccccccccccch
Q 007791 24 VLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKL-------RVTQNVLEHRNLEIKKVTGE 96 (589)
Q Consensus 24 ~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL-------~~~E~lle~KNLEiKkl~~E 96 (589)
+-.++.++..+..-+..+..-..++..|..+|.--..+|.+|.+....+...| +.+-..||.
T Consensus 104 ~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~----------- 172 (569)
T PRK04778 104 KHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEK----------- 172 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHH-----------
Confidence 34678888888888999999999999999999998899988887766554432 222222221
Q ss_pred hHHHHHHHH-------------HHHHHHHHH--hhhccCCCCCchhhhhccchhhH----hhHHHHHHHhhhhHHHHHHH
Q 007791 97 KKDALAAQY-------------AAEATLRRV--HANLKDDDSVPIESVLAPLEADI----KTYKKEIAALQEDKKALQRH 157 (589)
Q Consensus 97 kK~AlAAQf-------------AAEATLRRV--Ha~QKDdd~~PiEaIiAPLEAei----K~~r~EIa~LQdDnkALeRl 157 (589)
+=+.+..+| +|...|-.+ |..+=.+.|.-|-.++.+|..++ .-.+.=+..|.++.=.|+.+
T Consensus 173 ~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~ 252 (569)
T PRK04778 173 QLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHL 252 (569)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 111122222 233334333 23333334444444555554433 22222223333333333333
Q ss_pred hhhhHHHHHHHHHHHHHHH--HHHHhHHHHhhhhHHHHHHHHHHHH
Q 007791 158 TKAKEMALLEAEKILRSAL--ERALIVEEVQNLNFELKRQIEICQE 201 (589)
Q Consensus 158 tKsKEaALlEAeril~sAl--~kA~iVedvQN~N~EL~kQiEIcqE 201 (589)
.- +..+-....-+..++ -..+=++++..+|.++..+|+.|.+
T Consensus 253 ~i--~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd 296 (569)
T PRK04778 253 DI--EKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYD 296 (569)
T ss_pred Ch--HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 22 233333333333332 3345678888999999999988765
No 107
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=60.16 E-value=1.6e+02 Score=32.77 Aligned_cols=25 Identities=16% Similarity=0.502 Sum_probs=21.4
Q ss_pred chhhhhccchhhHhhHHHHHHHhhh
Q 007791 125 PIESVLAPLEADIKTYKKEIAALQE 149 (589)
Q Consensus 125 PiEaIiAPLEAeiK~~r~EIa~LQd 149 (589)
-|++++.||-..|+.++..|..+..
T Consensus 137 ~l~~ll~Pl~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 137 SLNSLLSPLREQLDGFRRQVQDSFG 161 (475)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3689999999999999998886654
No 108
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=59.35 E-value=16 Score=34.57 Aligned_cols=105 Identities=19% Similarity=0.334 Sum_probs=53.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHH
Q 007791 25 LELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQ 104 (589)
Q Consensus 25 ~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQ 104 (589)
.||..+...--+..-.|..+..++..|+..-..+...|.+|..++..+..+++-.+..|..|+--+--++||=-+-
T Consensus 81 ~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L---- 156 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL---- 156 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3444444444444556667778888888888889999999999999999999999999888777666676663222
Q ss_pred HHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHH-HHHhhhhH
Q 007791 105 YAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKAL-QRHTKAKE 162 (589)
Q Consensus 105 fAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkAL-eRltKsKE 162 (589)
..++.+....+.+|+.+|+-| +|+.+-|.
T Consensus 157 -----------------------------~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 157 -----------------------------QLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344555677788888765 78776664
No 109
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=58.19 E-value=80 Score=33.20 Aligned_cols=99 Identities=21% Similarity=0.316 Sum_probs=75.2
Q ss_pred hhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHH
Q 007791 128 SVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILE 207 (589)
Q Consensus 128 aIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLe 207 (589)
....-||.+++...+||+.++..-..|+.-...|+..|--|+--|. |.++ .=-+|-|...
T Consensus 258 ~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~-------------~R~~--RP~vElcrD~----- 317 (384)
T PF03148_consen 258 EAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE-------------NRTQ--RPNVELCRDP----- 317 (384)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-------------hHhc--CCchHHHHhh-----
Confidence 4566799999999999999999999999999999999887776554 2322 3445667643
Q ss_pred HhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHH
Q 007791 208 KTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQ 247 (589)
Q Consensus 208 K~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq 247 (589)
-+..=+.||..|..||..|.+.+-.+=+.-+.+...+-.
T Consensus 318 -~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~ 356 (384)
T PF03148_consen 318 -PQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLR 356 (384)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667799999999999999887766665555544433
No 110
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=58.17 E-value=24 Score=30.66 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=48.2
Q ss_pred HHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccch
Q 007791 217 VEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVA 273 (589)
Q Consensus 217 VEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA 273 (589)
+..|.+.|..||-+|=---...+....|...|+.|+..+..|..||-.+..-+|++-
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 456788899999998877777788899999999999999999999999877665543
No 111
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=57.89 E-value=2.9e+02 Score=30.34 Aligned_cols=151 Identities=29% Similarity=0.354 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHH
Q 007791 33 QLKEKDRELADAQGEIKALR----ATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAE 108 (589)
Q Consensus 33 ~lreKdRELg~A~aEIKaLr----~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAE 108 (589)
.+.+++.+|..+|.++.-++ ..|.-|-+|+.||. .+..+++.-++.|.+.+.+++.|. -+.|
T Consensus 28 ~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe-----------~akr~veel~~kLe~~~~~~~~a~---~~~e 93 (522)
T PF05701_consen 28 RVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELE-----------SAKRTVEELKLKLEKAQAEEKQAE---EDSE 93 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH---HhhH
Confidence 34456666666666665544 45566666666654 344455555555555555554332 2222
Q ss_pred HHHHHHhhh-ccCCCCCc------hhhh---hccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 007791 109 ATLRRVHAN-LKDDDSVP------IESV---LAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALER 178 (589)
Q Consensus 109 ATLRRVHa~-QKDdd~~P------iEaI---iAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~k 178 (589)
..--|++-- |...+..+ ++++ .+..=++|...++|+.+++.+-.+ +.--|-.|+-.|+..+.++-.-
T Consensus 94 ~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~---~~~~k~~A~~~aeea~~~a~~~ 170 (522)
T PF05701_consen 94 LAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELAS---ALDAKNAALKQAEEAVSAAEEN 170 (522)
T ss_pred HhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 222233322 22222211 1111 122224566677777777666443 3346889999999999999999
Q ss_pred HHhHHHHhhhhHHHHHHHHHHH
Q 007791 179 ALIVEEVQNLNFELKRQIEICQ 200 (589)
Q Consensus 179 A~iVedvQN~N~EL~kQiEIcq 200 (589)
+--|++|...-..|+.-++-.+
T Consensus 171 ~~kve~L~~Ei~~lke~l~~~~ 192 (522)
T PF05701_consen 171 EEKVEELSKEIIALKESLESAK 192 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887776553
No 112
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.97 E-value=3.7e+02 Score=31.19 Aligned_cols=184 Identities=24% Similarity=0.300 Sum_probs=102.6
Q ss_pred CchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-HHHHhhhhHHHHHHHHH----
Q 007791 124 VPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALI-VEEVQNLNFELKRQIEI---- 198 (589)
Q Consensus 124 ~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~i-VedvQN~N~EL~kQiEI---- 198 (589)
.+-...+.-||+|||.+|-||... |.+|.=..++-.-|...|+.+++-|...-. -|+|||+.++|.++.+-
T Consensus 414 ~~~~~a~~rLE~dvkkLraeLq~~----Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~ 489 (697)
T PF09726_consen 414 NSEPDAISRLEADVKKLRAELQSS----RQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQS 489 (697)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667999999999998764 566777778877888889999988875543 68899999999877542
Q ss_pred -HHHHhHHHH-HhhhhhHHHHHHHHhhH--HHHHHHHHhccc--hhhhHH-----HHHHHHHHHHHHHhHHHHHHhhhhh
Q 007791 199 -CQEENRILE-KTNRQKVLEVEKLSGTI--KELEEAVLAGGS--AANAIR-----DYQRQITELNEEKRTLERELARVKV 267 (589)
Q Consensus 199 -cqEENkiLe-K~hRQKV~EVEKLsqTi--~ELEEaiLAgGa--aANAvr-----dYqrq~~elnEEkrtLeRELARaKV 267 (589)
-+=|.||-+ ..+| +++|+--+-- ...+|..=|.-+ .+.+.| -.+...++|..|.+.|.+||.-..
T Consensus 490 l~~LEkrL~eE~~~R---~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~ke- 565 (697)
T PF09726_consen 490 LQQLEKRLAEERRQR---ASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKE- 565 (697)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333444332 2222 2344322211 112221112111 111111 145577888899999999885322
Q ss_pred ccccchhhhhcccccCCCccchhHHH-HH---HhhhhHHHHHHHHHHHHHhHHhHHHHHHHH
Q 007791 268 SANRVATVVANEWKDENDKVMPVRQW-LE---ERRLLQAEMQRLKDKLAISERTAKAEAQLK 325 (589)
Q Consensus 268 saNRVA~vvANEWKD~nDKvMPVKqW-LE---ERR~lQgEmQ~LrDKLAiaERtAKaEaQLk 325 (589)
-..+++- .+. =-+... -| +--.|-..++-|+||=+--|.+=.||--+|
T Consensus 566 e~~~~~e-------~~~---~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriK 617 (697)
T PF09726_consen 566 EQIRELE-------SEL---QELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIK 617 (697)
T ss_pred HHHHHHH-------HHH---HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2222111 110 000000 11 223455555666777766666666666665
No 113
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.76 E-value=3.8e+02 Score=31.34 Aligned_cols=60 Identities=32% Similarity=0.470 Sum_probs=49.5
Q ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCcc
Q 007791 225 KELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKV 287 (589)
Q Consensus 225 ~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKv 287 (589)
-+=||+.|--.||--+ .|-++|-+|.-|.+.|+.||++++----|++.|+ .+.|+.|.-|
T Consensus 88 ~e~EesLLqESaakE~--~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~-sd~~e~~~~~ 147 (772)
T KOG0999|consen 88 EEREESLLQESAAKEE--YYLQKILELENELKQLRQELTNVQEENERLEKVH-SDLKESNAAV 147 (772)
T ss_pred hhhHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcchhh
Confidence 3558888877766544 7999999999999999999999999888988876 6777777655
No 114
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.63 E-value=33 Score=31.59 Aligned_cols=40 Identities=35% Similarity=0.504 Sum_probs=24.2
Q ss_pred hhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHH
Q 007791 115 HANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQ 155 (589)
Q Consensus 115 Ha~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALe 155 (589)
|++|.+-+.++-+- ++.|..+|...+.++..|+.+.+.|.
T Consensus 60 ~~~Q~~~~~~s~ee-l~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 60 FANQDELEVPSPEE-LAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred eeCccccCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666655444333 66666666666666666666666554
No 115
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=56.40 E-value=5.7e+02 Score=33.21 Aligned_cols=189 Identities=23% Similarity=0.249 Sum_probs=123.3
Q ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHH
Q 007791 22 PVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDAL 101 (589)
Q Consensus 22 Pv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~Al 101 (589)
-...|+|-|-|+|.....+.....-+|-++...--.=-+|-.|+-++=.-+-+=|.-...-|+-++-+++.++++=+.+-
T Consensus 77 ~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~ 156 (1822)
T KOG4674|consen 77 LLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSST 156 (1822)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888777777777777777765444334455555544444444444444556666778888888888888
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 007791 102 AAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALI 181 (589)
Q Consensus 102 AAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~i 181 (589)
.+--=.++++-+.-+.+ .-++......-+|-..|+-+++-|+|=..++=.-|+.-+|. .-..
T Consensus 157 ~~~~e~e~r~~e~~s~~------------vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re------~s~~ 218 (1822)
T KOG4674|consen 157 KTLSELEARLQETQSED------------VSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRRE------HSIE 218 (1822)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh------hhhH
Confidence 88777888888765543 23677777778899999999999999777776666666654 2334
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhh-------hhHHHHHHHHhhHHHHH
Q 007791 182 VEEVQNLNFELKRQIEICQEENRILEKTNR-------QKVLEVEKLSGTIKELE 228 (589)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hR-------QKV~EVEKLsqTi~ELE 228 (589)
|.+++++=..+..+..-||+-|+.|..-++ -++.++-++.+|-...+
T Consensus 219 ~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~ 272 (1822)
T KOG4674|consen 219 VEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSE 272 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 555555555555555555555555544333 34666666666544333
No 116
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=55.53 E-value=23 Score=31.84 Aligned_cols=50 Identities=36% Similarity=0.377 Sum_probs=36.8
Q ss_pred hhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Q 007791 138 KTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEI 198 (589)
Q Consensus 138 K~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEI 198 (589)
...+.||++||+..|+++. -+||||-+.||..-+- ++-.-|-||.+-+|.
T Consensus 5 s~I~~eIekLqe~lk~~e~---------keaERigr~AlKaGL~--eieI~d~eL~~~Fee 54 (92)
T PF07820_consen 5 SKIREEIEKLQEQLKQAET---------KEAERIGRIALKAGLG--EIEISDAELQAAFEE 54 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHcccc--cccCCHHHHHHHHHH
Confidence 3467899999999998875 6899999999875442 455556666665543
No 117
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=54.19 E-value=2.1e+02 Score=27.56 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=46.7
Q ss_pred HHhHHHHhhhhHHHHHHHHH-HHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHH
Q 007791 179 ALIVEEVQNLNFELKRQIEI-CQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIR 242 (589)
Q Consensus 179 A~iVedvQN~N~EL~kQiEI-cqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvr 242 (589)
|....+..+-+.+|+.-|+- .++=+++-|++.++|.-|+=+|+..|. +-|+.+-|-.|-++
T Consensus 91 a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~---~k~~~~~~~~~~~~ 152 (155)
T PRK06569 91 SEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNII---EKIAGTKADMNLLQ 152 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHhCccccHHHHh
Confidence 45666777788888887765 345577889999999999999999998 66766666666543
No 118
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=54.17 E-value=2e+02 Score=28.29 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=26.4
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhc
Q 007791 23 VVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEH 85 (589)
Q Consensus 23 v~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~ 85 (589)
...++..++.++......+..+++.++.+...-..-+..++.....+......+.-.+.|+++
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~ 140 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKK 140 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 344555555555555555444444444332211111222333333333334444444445444
No 119
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=53.71 E-value=1.2e+02 Score=29.07 Aligned_cols=60 Identities=33% Similarity=0.436 Sum_probs=40.0
Q ss_pred HHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh--HHHHhhhhHHHHHHHHHHHHHhHHHHHh
Q 007791 142 KEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALI--VEEVQNLNFELKRQIEICQEENRILEKT 209 (589)
Q Consensus 142 ~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~i--VedvQN~N~EL~kQiEIcqEENkiLeK~ 209 (589)
-|+..|++|+.-|.+-.. .++.++...+.=++ =|.....+++|..||+-||++|+-|...
T Consensus 50 ~e~~~L~~d~e~L~~q~~--------~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~ 111 (158)
T PF09744_consen 50 VELELLREDNEQLETQYE--------REKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELK 111 (158)
T ss_pred hHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777776665432 23334433333222 3556788999999999999999988843
No 120
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=53.46 E-value=2.3e+02 Score=27.81 Aligned_cols=44 Identities=20% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhccccchhhh-----hcccccCCCccc
Q 007791 245 QRQITELNEEKRTLERELARVKVSANRVATVV-----ANEWKDENDKVM 288 (589)
Q Consensus 245 qrq~~elnEEkrtLeRELARaKVsaNRVA~vv-----ANEWKD~nDKvM 288 (589)
+.++.++.......+..|.+..|.|--=.+|+ .++|-...+.+|
T Consensus 185 ~~~i~~~~~~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~l~ 233 (334)
T TIGR00998 185 QPAVQEAKERLKTAWLALKRTVIRAPFDGYVARRFVQVGQVVSPGQPLM 233 (334)
T ss_pred hHHHHHHHHHHHHHHHHhhCcEEEcCCCcEEEEEecCCCCEeCCCCeeE
Confidence 34455555555566666777666664433332 244544444443
No 121
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=53.10 E-value=14 Score=26.01 Aligned_cols=20 Identities=35% Similarity=0.802 Sum_probs=18.3
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 007791 26 ELNRLQNQLKEKDRELADAQ 45 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~ 45 (589)
|++||.+.++|.+++|.+|.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999998874
No 122
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=52.98 E-value=53 Score=37.51 Aligned_cols=97 Identities=23% Similarity=0.232 Sum_probs=60.3
Q ss_pred CCCCchhhhhccchhhHhhHHHHHHHhh--hhHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Q 007791 121 DDSVPIESVLAPLEADIKTYKKEIAALQ--EDKK-ALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIE 197 (589)
Q Consensus 121 dd~~PiEaIiAPLEAeiK~~r~EIa~LQ--dDnk-ALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiE 197 (589)
+++--||.||+=|+.=|..|=.-|..+| +|-- .++.|..--.--++ ||...=+-+|+|.|
T Consensus 57 ~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~-----------------~vK~~L~~vK~qve 119 (683)
T PF08580_consen 57 EGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMEL-----------------DVKKTLISVKKQVE 119 (683)
T ss_pred HhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 4556689999999999988877777777 3322 24443322222222 45555556777877
Q ss_pred HHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhc
Q 007791 198 ICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAG 234 (589)
Q Consensus 198 IcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAg 234 (589)
|.-|=+.|..-.-=-=-.|||.+.+.|-|+||-=+++
T Consensus 120 iAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~S 156 (683)
T PF08580_consen 120 IAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSS 156 (683)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 7777666655444444467777777777777654443
No 123
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=52.11 E-value=1.1e+02 Score=30.90 Aligned_cols=62 Identities=21% Similarity=0.387 Sum_probs=37.6
Q ss_pred hhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHH
Q 007791 81 NVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKAL 154 (589)
Q Consensus 81 ~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkAL 154 (589)
..|+.-.=|+-.|..||..- ..-||=||+.-.+ +|+||.=+++|-...+..|..|+++-.-|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h-------~eeLrqI~~DIn~-----lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAH-------VEELRQINQDINT-----LENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555433 3457777775544 77777777777777777777777765444
No 124
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.82 E-value=1.8e+02 Score=26.16 Aligned_cols=67 Identities=18% Similarity=0.400 Sum_probs=46.7
Q ss_pred HHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHH
Q 007791 228 EEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRL 307 (589)
Q Consensus 228 EEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~L 307 (589)
|.-++--+.++.++..++.+++++..+...|.-++..|+..... --..|-+++..|+.|+..+
T Consensus 48 E~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~-----------------~e~sw~~qk~~le~e~~~~ 110 (132)
T PF07926_consen 48 ERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEE-----------------SEASWEEQKEQLEKELSEL 110 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHHHH
Confidence 43455556667777777777777777777777776666554311 1234999999999999888
Q ss_pred HHHH
Q 007791 308 KDKL 311 (589)
Q Consensus 308 rDKL 311 (589)
..++
T Consensus 111 ~~r~ 114 (132)
T PF07926_consen 111 EQRI 114 (132)
T ss_pred HHHH
Confidence 7665
No 125
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.04 E-value=2.1e+02 Score=26.62 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=27.0
Q ss_pred HHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHH
Q 007791 215 LEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLEREL 262 (589)
Q Consensus 215 ~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeREL 262 (589)
.+|+++...+.++...+-.+.-..=.+--|+|.|+-|-++....+.=|
T Consensus 49 ~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L 96 (143)
T PF12718_consen 49 EELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 356666666666666555444333333467777776666655555444
No 126
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=50.55 E-value=27 Score=31.85 Aligned_cols=32 Identities=47% Similarity=0.514 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 007791 140 YKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERAL 180 (589)
Q Consensus 140 ~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~ 180 (589)
.+.||++||+..|.++. -+||||-+.||.--+
T Consensus 8 I~~eI~kLqe~lk~~e~---------keAERigRiAlKAGL 39 (98)
T PRK13848 8 IREEIAKLQEQLKQAET---------REAERIGRIALKAGL 39 (98)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHcCc
Confidence 46799999998877764 689999999986443
No 127
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=50.50 E-value=1.5e+02 Score=29.80 Aligned_cols=53 Identities=26% Similarity=0.231 Sum_probs=33.6
Q ss_pred HhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHH
Q 007791 180 LIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVL 232 (589)
Q Consensus 180 ~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiL 232 (589)
+-|+|||+.|+.|.-+.--||-.---+|-.+.+=-.|++.|-..++-+--++-
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~ 60 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ 60 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888877776666666666666666555556666555555543333
No 128
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=50.42 E-value=2.1e+02 Score=26.41 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=7.2
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 007791 184 EVQNLNFELKRQIEICQE 201 (589)
Q Consensus 184 dvQN~N~EL~kQiEIcqE 201 (589)
+++++++++..+++-.++
T Consensus 99 ~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 99 QLQERIQELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 129
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.91 E-value=2.7e+02 Score=31.09 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhhHHHhhHHhhHHHHHhhhhhhhhccc
Q 007791 533 IKMLIRKVDALTKAIEAESKKIKREAAAREKEAISAKLD 571 (589)
Q Consensus 533 IeML~KKVdtLtKAmEVE~KKmrRE~Aa~EKE~aa~r~d 571 (589)
+....++++....-++.+.+.|-|....||++|......
T Consensus 365 ~~~~~~~~~~~~~dl~k~~k~~~~~~kk~Ek~i~k~~e~ 403 (438)
T COG4487 365 VEAIDEKLENTQLDLEKEKKAIIRAWKKREKEIEKLIES 403 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567788888889999999999999999998776543
No 130
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.60 E-value=5.6e+02 Score=30.85 Aligned_cols=85 Identities=29% Similarity=0.316 Sum_probs=58.8
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHhHHHHHhh-----------hhhHHHHHHHHhhHHH-----------HHHHHHhccchh
Q 007791 181 IVEEVQNLNFELKRQIEICQEENRILEKTN-----------RQKVLEVEKLSGTIKE-----------LEEAVLAGGSAA 238 (589)
Q Consensus 181 iVedvQN~N~EL~kQiEIcqEENkiLeK~h-----------RQKV~EVEKLsqTi~E-----------LEEaiLAgGaaA 238 (589)
=.|.||++|.||.|-||--.+|||=|-+|- +|--+|..++..-|.| ||++=-=.+.--
T Consensus 449 ~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~ 528 (861)
T PF15254_consen 449 SQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILG 528 (861)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhh
Confidence 468999999999999999999999888773 2333444444433322 333333344455
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhh
Q 007791 239 NAIRDYQRQITELNEEKRTLERELARV 265 (589)
Q Consensus 239 NAvrdYqrq~~elnEEkrtLeRELARa 265 (589)
+.+|.---.|..|+|--|||.-=.|+.
T Consensus 529 itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 529 ITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888888888887766554
No 131
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=48.49 E-value=1.2e+02 Score=28.82 Aligned_cols=59 Identities=32% Similarity=0.490 Sum_probs=40.5
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhH
Q 007791 181 IVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRT 257 (589)
Q Consensus 181 iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrt 257 (589)
++++|-..+.+|.+.++..++ |.+--..|..|.+.|.+|++- |+++.+++.++..+..+
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~--------hq~~~~~I~~L~~e~~~ld~~----------i~~~~~~L~~~~~~L~~ 61 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQE--------HQENQARIQQLRAEIEELDEQ----------IRDILKQLKEARKELRT 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 456677777777777777655 777777888888888888873 46666666555444433
No 132
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=48.38 E-value=2.9e+02 Score=27.56 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhccc
Q 007791 241 IRDYQRQITELNEEKRTLERELARVKVSAN 270 (589)
Q Consensus 241 vrdYqrq~~elnEEkrtLeRELARaKVsaN 270 (589)
+...+.++.+++.....++..|....|.|=
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP 277 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQRLIIRSP 277 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcEEECC
Confidence 445556666666666666666766666553
No 133
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=46.89 E-value=53 Score=30.22 Aligned_cols=47 Identities=32% Similarity=0.437 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 007791 297 RRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLKHVS 343 (589)
Q Consensus 297 RR~lQgEmQ~LrDKLAiaERtAKaEaQLkeKlklRLK~LEE~Lk~~~ 343 (589)
|-...-|=+.|+-+||--|--.+.--.|+..|..|+|-||-.||...
T Consensus 20 R~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER 66 (134)
T PF08232_consen 20 RNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQER 66 (134)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555677888999899999999999999999999999998763
No 134
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.88 E-value=1.6e+02 Score=24.77 Aligned_cols=63 Identities=33% Similarity=0.469 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhh
Q 007791 193 KRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARV 265 (589)
Q Consensus 193 ~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARa 265 (589)
--||.-.++|-.-|.+..-+--.-|-||.+++.++|.. +..|..++..+..+...|+.-|.++
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~----------~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ----------IKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34777788888888888877778889999999999864 5667788888888888887777654
No 135
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.80 E-value=29 Score=35.60 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=29.0
Q ss_pred CCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 007791 19 HPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEE 64 (589)
Q Consensus 19 ~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveE 64 (589)
.--|...+|..+++.+......|.+.+.++..+...-..-.+-+++
T Consensus 215 ~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888887777777777777777766665443333333333
No 136
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=46.69 E-value=2.5e+02 Score=26.17 Aligned_cols=111 Identities=23% Similarity=0.335 Sum_probs=70.1
Q ss_pred hhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 007791 129 VLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEK 208 (589)
Q Consensus 129 IiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK 208 (589)
-+--||.+....-+||..||--+.-|+-=.-.=+..|-++...+..+-.+..-++-++.+++-|-.+++-..
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae-------- 93 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAE-------- 93 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHH--------
Confidence 344466677777777888877777776555555555555555555555555555555555555544444322
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHh
Q 007791 209 TNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELA 263 (589)
Q Consensus 209 ~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELA 263 (589)
.+|..|...|.++=+.. -.|-|++..|..++-++|+-+.
T Consensus 94 ---------~~L~e~~ekl~e~d~~a-------e~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 94 ---------KKLKETTEKLREADVKA-------EHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred ---------HHHHHHHHHHHHHHHHh-------HHHHHHHHHHHhhHHHHHHHHH
Confidence 35677777777765544 4678888888888888777554
No 137
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=46.42 E-value=2.2e+02 Score=28.48 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred CchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhcc-ccccccccchhHH
Q 007791 21 DPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHR-NLEIKKVTGEKKD 99 (589)
Q Consensus 21 DPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~K-NLEiKkl~~EkK~ 99 (589)
|+..-+||.+|.-+.|.-+-..-...-|.++|-+|..=-+.+++....|.+...+...+...-+.+ +.--+.|..-++.
T Consensus 79 dq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~ 158 (207)
T PF05010_consen 79 DQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSK 158 (207)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHh
Q 007791 100 ALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAAL 147 (589)
Q Consensus 100 AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~L 147 (589)
+=|=-.|-.|.|||- +.=+.-||..|..-.+|+..|
T Consensus 159 ~~~e~~aLqa~lkk~------------e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 159 HQAELLALQASLKKE------------EMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred hHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
No 138
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=44.57 E-value=3.3e+02 Score=30.83 Aligned_cols=60 Identities=32% Similarity=0.414 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHH
Q 007791 186 QNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTL 258 (589)
Q Consensus 186 QN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtL 258 (589)
|++=-.+-+|..--+|+|+.|-+-. --..+++.++||.- .-+++-|+-+|++|+|..|.|
T Consensus 388 q~k~~k~~kel~~~~E~n~~l~knq-------~vw~~kl~~~~e~~------~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 388 QTKLKKCQKELKEEREENKKLIKNQ-------DVWRGKLKELEERE------KEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhH
Confidence 3333444445555557777775531 12334444555532 235778899999999998765
No 139
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.42 E-value=2.4e+02 Score=25.46 Aligned_cols=77 Identities=29% Similarity=0.419 Sum_probs=42.2
Q ss_pred HHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccchhHHHH
Q 007791 215 LEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWL 294 (589)
Q Consensus 215 ~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWL 294 (589)
..+++|...+.++|-.+- .+-+..+.-+.++..+..--+.+-.|++|.+..+..+.+-.++|
T Consensus 73 ~~~~rL~~~~~~~ere~~---~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e--------------- 134 (151)
T PF11559_consen 73 NDVERLKEQLEELERELA---SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHE--------------- 134 (151)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 334444444444443332 34445555556666666666666677777777666666544433
Q ss_pred HHhhhhHHHHHHHHHHH
Q 007791 295 EERRLLQAEMQRLKDKL 311 (589)
Q Consensus 295 EERR~lQgEmQ~LrDKL 311 (589)
.|=-.-||++|+++|
T Consensus 135 --~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 135 --LRKKEREIEKLKERL 149 (151)
T ss_pred --HHHHHHHHHHHHHHh
Confidence 233455777777665
No 140
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=43.81 E-value=3.3e+02 Score=26.83 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=49.5
Q ss_pred HHHHHhhhhHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHH
Q 007791 142 KEIAALQEDKKAL----QRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEV 217 (589)
Q Consensus 142 ~EIa~LQdDnkAL----eRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EV 217 (589)
..+.+.|+++++| .+...--++=|-++...|+.|.+...-.+++-..|+.....+ -.|+.+|
T Consensus 167 ~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~--------------~~k~~~l 232 (264)
T PF06008_consen 167 KWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDL--------------EKKKQEL 232 (264)
T ss_pred HHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 3566667777766 444566678888999999999999999999988887654432 3455566
Q ss_pred HHHHhhHHH
Q 007791 218 EKLSGTIKE 226 (589)
Q Consensus 218 EKLsqTi~E 226 (589)
.....+|.+
T Consensus 233 ~~~~~~~~~ 241 (264)
T PF06008_consen 233 SEQQNEVSE 241 (264)
T ss_pred HHHHHHHHH
Confidence 665555443
No 141
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.58 E-value=1.4e+02 Score=28.32 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=27.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCchhh
Q 007791 49 KALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIES 128 (589)
Q Consensus 49 KaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEa 128 (589)
.+|+.-.+.- +++.+|..-..++-++...++..-.. |.. .-.+++.-|..-.-.+.++--+
T Consensus 7 ~~L~~Rd~~e-~~~~~li~ay~~L~d~~~~l~~~~~~--l~~----------------~~~~~~~~~~~~~~~~~~~~~~ 67 (194)
T PF08614_consen 7 AQLRERDRRE-KAFAELIDAYNRLADRTSLLKAENEQ--LQP----------------EAESLPSSSSSSPSESGSVSSA 67 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-cccccccccccccccccccccccccc--ccc----------------cccccccccccccccccccccc
Confidence 3455555544 88888888887777776655433221 111 0011222333333444445556
Q ss_pred hhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 007791 129 VLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEK 208 (589)
Q Consensus 129 IiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK 208 (589)
-++.++..+-..+.|++.++-.+--+..-....... +..+.....+....|..++.++.-|+.
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~-----------------l~~l~~~~~~~~~~l~~l~~~~~~L~~ 130 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDE-----------------LQELEKELSEKERRLAELEAELAQLEE 130 (194)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccc-----------------cchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 667777777667767666665443322111111111 122223333444455555555555555
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHH
Q 007791 209 TNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRD 243 (589)
Q Consensus 209 ~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrd 243 (589)
-.++.-.+|+....+|.-|=.-++|--...|.+.+
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEE 165 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555433
No 142
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=42.25 E-value=1.6e+02 Score=24.81 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=41.6
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhh
Q 007791 23 VVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLE 84 (589)
Q Consensus 23 v~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle 84 (589)
+.-+...|+|.+.-.+|.++.-+.++|.|+.----=...+.....+..++...+..+..-|+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999973222222333444555555555555554443
No 143
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=42.22 E-value=2.9e+02 Score=25.82 Aligned_cols=84 Identities=24% Similarity=0.245 Sum_probs=59.0
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-----hHHHHhhhhHHHHHHHHHHHHH--hHHHHHhhhhhHHHHHHH
Q 007791 148 QEDKKALQRHTKAKEMALLEAEKILRSALERAL-----IVEEVQNLNFELKRQIEICQEE--NRILEKTNRQKVLEVEKL 220 (589)
Q Consensus 148 QdDnkALeRltKsKEaALlEAeril~sAl~kA~-----iVedvQN~N~EL~kQiEIcqEE--NkiLeK~hRQKV~EVEKL 220 (589)
++-.+.++.|-+-=|.+=-.+...+...++.+. +|+|+.++=..-.-.+|-.-++ +.+|.++.=.---+|+.|
T Consensus 35 ~EG~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L 114 (132)
T PF05597_consen 35 EEGSKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEAL 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 455777888887777766666666666666665 7777777666666666665555 577777776667788888
Q ss_pred HhhHHHHHHHH
Q 007791 221 SGTIKELEEAV 231 (589)
Q Consensus 221 sqTi~ELEEai 231 (589)
+.-|.+|+..|
T Consensus 115 ~~rId~L~~~v 125 (132)
T PF05597_consen 115 SARIDQLTAQV 125 (132)
T ss_pred HHHHHHHHHHH
Confidence 88888887544
No 144
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=41.73 E-value=1.9e+02 Score=23.43 Aligned_cols=61 Identities=25% Similarity=0.418 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHH
Q 007791 167 EAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAV 231 (589)
Q Consensus 167 EAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEai 231 (589)
+++..++..|..+. ++++++.-..|..+|+.+++|-+-+=--|-++.+.+ +.+|..|+..+
T Consensus 7 d~~~~~~~~l~~~s-~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~a---s~~I~~m~~~~ 67 (87)
T PF08700_consen 7 DVDEYFKDLLKNSS-IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEA---SDEISSMENDL 67 (87)
T ss_pred CHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHH
Confidence 56778888888888 699999999999999999999887776677766654 56677777665
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.36 E-value=3.9e+02 Score=27.97 Aligned_cols=62 Identities=24% Similarity=0.145 Sum_probs=34.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhccCCC--CCchhhhhccchhhHhhHHHHHHHhhhhHHHHH
Q 007791 94 TGEKKDALAAQYAAEATLRRVHANLKDDD--SVPIESVLAPLEADIKTYKKEIAALQEDKKALQ 155 (589)
Q Consensus 94 ~~EkK~AlAAQfAAEATLRRVHa~QKDdd--~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALe 155 (589)
.++++.-=..|.+-+-.+--+-+++++-+ +-.++.=.+-+++=|-.+..+.+.++.++.+|.
T Consensus 154 k~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 154 KEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444445566666777777766666532 223444444444444555556666666666666
No 146
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=41.29 E-value=37 Score=32.93 Aligned_cols=53 Identities=40% Similarity=0.631 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHHHHhHHhHHH
Q 007791 241 IRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTAKA 320 (589)
Q Consensus 241 vrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAKa 320 (589)
+-|+..++..--|..--||-|| .||--|+-|.|||||-+ |--|.
T Consensus 2 LeD~EsklN~AIERnalLE~EL--------------------------------dEKE~L~~~~QRLkDE~----RDLKq 45 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL--------------------------------DEKENLREEVQRLKDEL----RDLKQ 45 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHCH----------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH--------------------------------HHHHHHHHHHHHHHHHH----HHHHH
Confidence 3466666666667777788877 68888999999999987 57788
Q ss_pred HHHHHHHHH
Q 007791 321 EAQLKEKLK 329 (589)
Q Consensus 321 EaQLkeKlk 329 (589)
|..+++|++
T Consensus 46 El~V~ek~~ 54 (166)
T PF04880_consen 46 ELIVQEKLR 54 (166)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 888887775
No 147
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=41.18 E-value=5.2e+02 Score=28.94 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=70.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccc----cc-hhHHH
Q 007791 26 ELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKV----TG-EKKDA 100 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl----~~-EkK~A 100 (589)
++-+--.+++++.+++..-+.|--+.+.--..|.-+++-+-+-++-.+++++..|++++.--=-..+. .+ |+
T Consensus 140 ~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~~e~--- 216 (464)
T KOG4637|consen 140 KLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGNSEK--- 216 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCchHH---
Confidence 44555567888999988888888877776667778898888888888999999999987532122222 11 22
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHH
Q 007791 101 LAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKAL 154 (589)
Q Consensus 101 lAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkAL 154 (589)
.++-||+-++-++ +-|.....+...|.||.|||
T Consensus 217 ~~~~~a~N~~~~k---------------------s~i~ei~~sl~~l~d~lk~~ 249 (464)
T KOG4637|consen 217 EIGRIANNYDKLK---------------------SRIREIHDSLTRLEDDLKAL 249 (464)
T ss_pred HHHHHHhhhHHHH---------------------HHHHHHHHHHHhHHHHHHHH
Confidence 2334444444332 33444556788888888887
No 148
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.14 E-value=4.5e+02 Score=27.68 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=8.9
Q ss_pred hhhhhcCCCchh
Q 007791 13 EELSLAHPDPVV 24 (589)
Q Consensus 13 ~e~~~~~sDPv~ 24 (589)
.++.+-++||-.
T Consensus 124 i~Is~~~~dP~~ 135 (498)
T TIGR03007 124 FTISYEDKDPEL 135 (498)
T ss_pred EEEEeeCCCHHH
Confidence 566688889964
No 149
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=41.01 E-value=2.5e+02 Score=24.80 Aligned_cols=62 Identities=26% Similarity=0.265 Sum_probs=41.5
Q ss_pred hHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HhHHHHhhhhHHHHHHHHHHHHHhH
Q 007791 139 TYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERA-LIVEEVQNLNFELKRQIEICQEENR 204 (589)
Q Consensus 139 ~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA-~iVedvQN~N~EL~kQiEIcqEENk 204 (589)
...+.|..|..+|++.....+..+.+.- .|..++..- -+|+..|.+++++..|.|..+|.-|
T Consensus 22 ~qs~~i~~L~a~n~~q~~tI~qq~~~~~----~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik 84 (110)
T PF10828_consen 22 YQSQRIDRLRAENKAQAQTIQQQEDANQ----ELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999888887777766532 233333322 4667778888888888877776543
No 150
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.37 E-value=1.9e+02 Score=24.37 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=28.8
Q ss_pred HHHHHhhhhHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHH
Q 007791 142 KEIAALQEDKKALQRHTKAKEMALLEA----EKILRSALERALIVEEVQNLNFELKRQIEICQ 200 (589)
Q Consensus 142 ~EIa~LQdDnkALeRltKsKEaALlEA----eril~sAl~kA~iVedvQN~N~EL~kQiEIcq 200 (589)
.+|+.||.++..+.|....-+.++-.- ...++++=..-.=.++|+..|..|.++++-|+
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666666666666655555443211 11222222222234566666666666655554
No 151
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=40.22 E-value=4.7e+02 Score=27.55 Aligned_cols=102 Identities=19% Similarity=0.304 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhcc
Q 007791 190 FELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSA 269 (589)
Q Consensus 190 ~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsa 269 (589)
.-|+..+|..+|..--|.+-+|.|+-++|.+.+++..| +.++.+|.++.+..+.-+.-.++-.
T Consensus 115 d~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L-----------------~~e~~~Lre~L~~rdeli~khGlVl 177 (302)
T PF09738_consen 115 DLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL-----------------REELDELREQLKQRDELIEKHGLVL 177 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHCCeee
Confidence 44788888889999889999999999999888877766 3456667777777776666655544
Q ss_pred cc-----------------chhhhhcc----cccC-CCcc-chhHHHHHHhhhhHHHHHHHH
Q 007791 270 NR-----------------VATVVANE----WKDE-NDKV-MPVRQWLEERRLLQAEMQRLK 308 (589)
Q Consensus 270 NR-----------------VA~vvANE----WKD~-nDKv-MPVKqWLEERR~lQgEmQ~Lr 308 (589)
+= -+++|..| -+.. ++.+ .-+|...+||.-|+.+|+.|+
T Consensus 178 v~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk 239 (302)
T PF09738_consen 178 VPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLK 239 (302)
T ss_pred CCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 11222111 1112 1221 236778888888888887665
No 152
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=39.80 E-value=4.8e+02 Score=27.62 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhh-----c-ccccCCCccch
Q 007791 238 ANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVA-----N-EWKDENDKVMP 289 (589)
Q Consensus 238 ANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvA-----N-EWKD~nDKvMP 289 (589)
...+...+.++..+.......+..|.+..|.|--=.+|+. + +|-...+.||.
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~~~~~~~G~~~V~~G~~l~~ 347 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGVLHLNPETKGIKYVPKGTLIAQ 347 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeEEEecccCCCCcEeCCCCEEEE
Confidence 4445555777777888888888888888887754444431 2 45555555553
No 153
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=39.64 E-value=1.7e+02 Score=30.24 Aligned_cols=70 Identities=30% Similarity=0.329 Sum_probs=45.8
Q ss_pred hhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhh
Q 007791 134 EADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQK 213 (589)
Q Consensus 134 EAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQK 213 (589)
|.+-.+++.+++.|.++|++|++..-.-++-+--+| .+++.+++.. | .-..||+.+|-++|||=
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e--~r~~E~r~ie-E-------------kk~~eei~fLk~tN~qL 247 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDE--IRSEEEREIE-E-------------KKMKEEIEFLKETNRQL 247 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH-H-------------HHHHHHHHHHHHHHHHH
Confidence 445567888999999999999987655554444333 2444444321 1 02457888999999986
Q ss_pred HHHHHH
Q 007791 214 VLEVEK 219 (589)
Q Consensus 214 V~EVEK 219 (589)
-+-+|-
T Consensus 248 KaQLeg 253 (259)
T KOG4001|consen 248 KAQLEG 253 (259)
T ss_pred HHHHhh
Confidence 665543
No 154
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.46 E-value=3.9e+02 Score=26.47 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=34.4
Q ss_pred HhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHH-----HHHHhccchh
Q 007791 180 LIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELE-----EAVLAGGSAA 238 (589)
Q Consensus 180 ~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELE-----EaiLAgGaaA 238 (589)
....++|++-.++..+|.-..+||.=|..-.-+--.+++.|.+-+..+. +-.+.||.+|
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~ 181 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVA 181 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Confidence 3344555555556666776777777775554444455555555555555 4456666554
No 155
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.38 E-value=3.4e+02 Score=25.74 Aligned_cols=116 Identities=19% Similarity=0.320 Sum_probs=76.8
Q ss_pred cccchhhhhhcCCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccc
Q 007791 8 KLGGVEELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRN 87 (589)
Q Consensus 8 ~~gg~~e~~~~~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KN 87 (589)
+-|...+++-...||. --|+..+||-+..|..+...+-........-++=++++..+..++..+.... |..-
T Consensus 10 ~~a~~~~~ld~~EDP~----~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A---l~~g- 81 (221)
T PF04012_consen 10 VKANINELLDKAEDPE----KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA---LAAG- 81 (221)
T ss_pred HHHHHHHHHHhhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcC-
Confidence 3444567777788998 5588899999999999999888888888888888888888888887776432 2221
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHH
Q 007791 88 LEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQ 155 (589)
Q Consensus 88 LEiKkl~~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALe 155 (589)
.+-| |...|.|.+. ++..++.|+..+..+...+..|..+-..|+
T Consensus 82 ----------~edL-----Ar~al~~k~~---------~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~ 125 (221)
T PF04012_consen 82 ----------REDL-----AREALQRKAD---------LEEQAERLEQQLDQAEAQVEKLKEQLEELE 125 (221)
T ss_pred ----------CHHH-----HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 2233333322 344556666666666666666665554443
No 156
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.95 E-value=7.3e+02 Score=29.44 Aligned_cols=90 Identities=27% Similarity=0.326 Sum_probs=58.3
Q ss_pred HhhhhHHHHHHHHHHHHHhHHHH---------HhhhhhHHHHHH--------------HHhhHHHHHHHHHhccchhhhH
Q 007791 185 VQNLNFELKRQIEICQEENRILE---------KTNRQKVLEVEK--------------LSGTIKELEEAVLAGGSAANAI 241 (589)
Q Consensus 185 vQN~N~EL~kQiEIcqEENkiLe---------K~hRQKV~EVEK--------------LsqTi~ELEEaiLAgGaaANAv 241 (589)
++|-=-++.+|+.-|++|++-+- .-|+|-.++-++ .---|.|||+-+.|--.-++-+
T Consensus 188 l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~ 267 (716)
T KOG4593|consen 188 LQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREEL 267 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666665431 224444443321 1124677777777776666655
Q ss_pred H---HHHHHHHHHHHHHhHHHHHHhhhhhccccchh
Q 007791 242 R---DYQRQITELNEEKRTLERELARVKVSANRVAT 274 (589)
Q Consensus 242 r---dYqrq~~elnEEkrtLeRELARaKVsaNRVA~ 274 (589)
- +-+.-+.-|.+|..-|+++|-|+-+.-.++++
T Consensus 268 ~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~ 303 (716)
T KOG4593|consen 268 ATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLG 303 (716)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 77888888889999999998888887777664
No 157
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=38.46 E-value=4.8e+02 Score=27.17 Aligned_cols=193 Identities=24% Similarity=0.260 Sum_probs=113.8
Q ss_pred chhHhhhhhHHHHHHHHHHHHHHHHH----HHHHHh-hHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccch
Q 007791 22 PVVLELNRLQNQLKEKDRELADAQGE----IKALRA-TEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGE 96 (589)
Q Consensus 22 Pv~~ELnRLeN~lreKdRELg~A~aE----IKaLr~-tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~E 96 (589)
+++-++-..|.-.-.+.|+|-.-|.= |..|-. +....+.|-.||.+==+|...++..++.+|++-|-.|++.+.|
T Consensus 24 ~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~e 103 (258)
T PF15397_consen 24 ELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEE 103 (258)
T ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555443322 222222 2233455666666666677777888899999888888877655
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCchhh-hhccchhhHhhHHHHHHHhhhhHHHHHHHh----hhhHHHHHHH-HH
Q 007791 97 KKDALAAQYAAEATLRRVHANLKDDDSVPIES-VLAPLEADIKTYKKEIAALQEDKKALQRHT----KAKEMALLEA-EK 170 (589)
Q Consensus 97 kK~AlAAQfAAEATLRRVHa~QKDdd~~PiEa-IiAPLEAeiK~~r~EIa~LQdDnkALeRlt----KsKEaALlEA-er 170 (589)
|+=++ .-+|- -.|+-+ =||-|.-.|.-.+.+- ||..-.|.++. .+=+...-+. +.
T Consensus 104 --------------l~~L~-TYkD~-EYPvK~vqIa~L~rqlq~lk~~q---qdEldel~e~~~~el~~l~~~~q~k~~~ 164 (258)
T PF15397_consen 104 --------------LNFLS-TYKDH-EYPVKAVQIANLVRQLQQLKDSQ---QDELDELNEMRQMELASLSRKIQEKKEE 164 (258)
T ss_pred --------------HHHHH-HHhhh-hhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233 33453 356666 6888887777666432 22223333221 1222222222 23
Q ss_pred HHHHHHHHHH-----hHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHh
Q 007791 171 ILRSALERAL-----IVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLA 233 (589)
Q Consensus 171 il~sAl~kA~-----iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLA 233 (589)
++.+|.+++. .|-..--+|+-++|+|..+.++..=|+.--.+=-+||+.|+..+++.=|.|++
T Consensus 165 il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~ 232 (258)
T PF15397_consen 165 ILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFA 232 (258)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhH
Confidence 3333433332 23344478999999999999998888877777778899998888887777765
No 158
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=38.04 E-value=7.4e+02 Score=29.24 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhHHHHHHHhhhhHH--HHHHHHH----------HHHHHHHHHH-----------hHHHHhhhhHHHHH
Q 007791 138 KTYKKEIAALQEDKKALQRHTKAKEM--ALLEAEK----------ILRSALERAL-----------IVEEVQNLNFELKR 194 (589)
Q Consensus 138 K~~r~EIa~LQdDnkALeRltKsKEa--ALlEAer----------il~sAl~kA~-----------iVedvQN~N~EL~k 194 (589)
+.+++|+-.|-...+++++--+++=. ++.+++| .|++-.+-+. -++|+|-+|+-|.-
T Consensus 396 ~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~ 475 (698)
T KOG0978|consen 396 VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQ 475 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHH
Q 007791 195 QIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITE 250 (589)
Q Consensus 195 QiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~e 250 (589)
|.+---..|.-|=.--=-=-..+--|..--..|++-|+..++.+++..+|-.++.+
T Consensus 476 el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~lee 531 (698)
T KOG0978|consen 476 ELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEE 531 (698)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 159
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=37.91 E-value=2.1e+02 Score=31.05 Aligned_cols=78 Identities=28% Similarity=0.403 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHH
Q 007791 29 RLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAE 108 (589)
Q Consensus 29 RLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAE 108 (589)
-|||+--|.-+.+.-||-|-|-|--+-|+|=--||-|+.-+..|+| +-||.-.||-
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEE------------------------aiLagGaaaN 59 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEE------------------------AILAGGAAAN 59 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHhcchHHH
Confidence 4788888888888889999888877777776555555544443332 3455555555
Q ss_pred HHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHH
Q 007791 109 ATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRH 157 (589)
Q Consensus 109 ATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRl 157 (589)
| +..|+..|..|++.+|.|||=
T Consensus 60 a---------------------------vrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 60 A---------------------------VRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred H---------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4 346899999999999999983
No 160
>PF13166 AAA_13: AAA domain
Probab=37.56 E-value=5.9e+02 Score=27.98 Aligned_cols=82 Identities=27% Similarity=0.311 Sum_probs=39.6
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHH
Q 007791 181 IVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLER 260 (589)
Q Consensus 181 iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeR 260 (589)
...+......++...|+...+.-.-|-..-.+|...+-.- -.+..+.+.+ -...+.+..|...+.+.|+.-..++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~-~~~~~~~~~~---~~l~~~i~~~n~~i~~~n~~~~~~~~ 391 (712)
T PF13166_consen 316 FYEEFEEDKEELKSAIEALKEELEELKKALEKKIKNPSSP-IELEEINEDI---DELNSIIDELNELIEEHNEKIDNLKK 391 (712)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566666666666555443333333443322210 0111111111 23345566666666666666666666
Q ss_pred HHhhhh
Q 007791 261 ELARVK 266 (589)
Q Consensus 261 ELARaK 266 (589)
++..++
T Consensus 392 ~~~~~~ 397 (712)
T PF13166_consen 392 EQNELK 397 (712)
T ss_pred HHHHHH
Confidence 666555
No 161
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.93 E-value=99 Score=34.48 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=15.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHH
Q 007791 183 EEVQNLNFELKRQIEICQEENRIL 206 (589)
Q Consensus 183 edvQN~N~EL~kQiEIcqEENkiL 206 (589)
.+-|++.-||.|||+..+-|..+|
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~ 95 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVL 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888877765444333
No 162
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.57 E-value=1.3e+02 Score=25.59 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=42.5
Q ss_pred CCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHhhhhhhhhhhhHhhhhc
Q 007791 19 HPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDK---AIEELRNEFGKIDGKLRVTQNVLEH 85 (589)
Q Consensus 19 ~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdK---AveEl~~el~K~deKL~~~E~lle~ 85 (589)
+....+.++-.|-.+.|....++...+++-+.+--.=...-+ .+++|..+...+.++++.+|..+..
T Consensus 23 ~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 23 GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888877665432222222 3556666666666666665555443
No 163
>PTZ00464 SNF-7-like protein; Provisional
Probab=35.56 E-value=4.6e+02 Score=26.13 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=23.2
Q ss_pred HHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHH
Q 007791 196 IEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAV 231 (589)
Q Consensus 196 iEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEai 231 (589)
+.-.+.=++.|.++|.+ + -|+++-.++.+++|.+
T Consensus 104 v~amk~g~kaLK~~~k~-i-~id~Vd~l~Dei~E~~ 137 (211)
T PTZ00464 104 VDAMKQAAKTLKKQFKK-L-NVDKVEDLQDELADLY 137 (211)
T ss_pred HHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHH
Confidence 34445678888888866 3 6777777777777653
No 164
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.50 E-value=1.6e+02 Score=31.77 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=22.5
Q ss_pred cchhHHHHHHhhhhHHHHHHHHHHHHHh
Q 007791 287 VMPVRQWLEERRLLQAEMQRLKDKLAIS 314 (589)
Q Consensus 287 vMPVKqWLEERR~lQgEmQ~LrDKLAia 314 (589)
..|+.+|.+--.|+..++..|+..+.=.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588899999999999999888766433
No 165
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=35.45 E-value=84 Score=31.40 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=31.5
Q ss_pred cccccchhhhhhcCCCch-----hHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007791 6 ELKLGGVEELSLAHPDPV-----VLELNRLQNQLKEKDRELADAQGEIKA 50 (589)
Q Consensus 6 e~~~gg~~e~~~~~sDPv-----~~ELnRLeN~lreKdRELg~A~aEIKa 50 (589)
.-+|+||.-.-..|.|.= --|..||+.+|.+.|-.|..++.+...
T Consensus 72 ~rlG~~~~s~~~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 72 SRLGRGGKSYKEKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHhccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666543323333332 248899999999999999999988876
No 166
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=35.30 E-value=2.7e+02 Score=23.32 Aligned_cols=97 Identities=27% Similarity=0.263 Sum_probs=63.7
Q ss_pred chhhhhccchhhHhhHHHHHHHhhh--------hHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHhH-----------
Q 007791 125 PIESVLAPLEADIKTYKKEIAALQE--------DKKALQRHTKAKEMALLEAEKI---LRSALERALIV----------- 182 (589)
Q Consensus 125 PiEaIiAPLEAeiK~~r~EIa~LQd--------DnkALeRltKsKEaALlEAeri---l~sAl~kA~iV----------- 182 (589)
+++.++.=|+.++..|..=+..+++ |-..|+.++.-|+..+.+...+ .+..+.+...-
T Consensus 2 ~~~~L~~~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~ 81 (143)
T PF05130_consen 2 AIEELIELLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIE 81 (143)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHh
Confidence 5777888888888888764444443 4556788888888877665543 33344443333
Q ss_pred --HHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHH
Q 007791 183 --EEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLS 221 (589)
Q Consensus 183 --edvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLs 221 (589)
.+++..-.+|..-++.|+..|..-..+-++...-|..+-
T Consensus 82 ~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~~~l 122 (143)
T PF05130_consen 82 EREELQALWRELRELLEELQELNERNQQLLEQALEFVQQLL 122 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888877666555544444443
No 167
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=35.29 E-value=6.4e+02 Score=28.78 Aligned_cols=170 Identities=28% Similarity=0.283 Sum_probs=93.9
Q ss_pred hcCCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccch
Q 007791 17 LAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGE 96 (589)
Q Consensus 17 ~~~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~E 96 (589)
++.-||+.+=||.=|..+.-|-+||.+.+-+ =++-++.-++.++.+.++|.++..=++......+...=+++-|
T Consensus 72 lG~~d~~pDPLsPgE~~l~~Kl~eLE~e~k~---d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~L--- 145 (508)
T PF00901_consen 72 LGTGDEPPDPLSPGEQGLQRKLKELEDEQKE---DEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEIL--- 145 (508)
T ss_pred ccCCCCCCCCCCHhHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHH---
Confidence 5666666667888888888888888766543 3344455556666677777766544443333222111111111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 007791 97 KKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSAL 176 (589)
Q Consensus 97 kK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl 176 (589)
=.-|++=++..++|-..|+.=.+||. -|...|++-
T Consensus 146 ---------------------------------ekAl~~~~~i~~~E~~~l~~L~~AL~------------kE~~~Rt~d 180 (508)
T PF00901_consen 146 ---------------------------------EKALKSYGKIVKEENKQLDRLARALQ------------KESRERTQD 180 (508)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhccHH
Confidence 11233344455555555555555543 355567776
Q ss_pred HHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHH--HHHHHHhccchhhhHHHH
Q 007791 177 ERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKE--LEEAVLAGGSAANAIRDY 244 (589)
Q Consensus 177 ~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~E--LEEaiLAgGaaANAvrdY 244 (589)
|++ ||++..++=.-|+.-||+-++ -|+--=|-|+=-++.-|-| =||.=|-|..+||++-.-
T Consensus 181 E~~-mv~~yr~ki~aL~~aIe~Er~------~m~EEAiqe~~dmsaeVlE~AaeEVP~vGag~At~iATa 243 (508)
T PF00901_consen 181 ERK-MVEEYRQKIDALKNAIEVERE------GMQEEAIQEIADMSAEVLEHAAEEVPLVGAGVATGIATA 243 (508)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHhcccHHHHHHHhhhCCcccHHHHHHHHHH
Confidence 665 567776666667777776442 1222223344444444443 356667788888887543
No 168
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=34.85 E-value=2.8e+02 Score=27.97 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=25.9
Q ss_pred HHHHHHHHhHHHHHHhhhhhccccchhhhhcc---cccCCCccchh
Q 007791 248 ITELNEEKRTLERELARVKVSANRVATVVANE---WKDENDKVMPV 290 (589)
Q Consensus 248 ~~elnEEkrtLeRELARaKVsaNRVA~vvANE---WKD~nDKvMPV 290 (589)
+..|..+--.|-.||+.-+-..++-+.-+..| |.++-|||+.-
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~Y 178 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRY 178 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556665555556666666654 88888888653
No 169
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=34.52 E-value=4e+02 Score=28.44 Aligned_cols=70 Identities=34% Similarity=0.417 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHH---hHHHHHHh
Q 007791 187 NLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEK---RTLERELA 263 (589)
Q Consensus 187 N~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEk---rtLeRELA 263 (589)
+.|..|..+++-.+.||.-|..-+.+=+..+|++...-.++|+.+ |.+=+.=|||-| |.|.+-|+
T Consensus 137 ~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L------------~~KF~~vLNeKK~KIR~lq~~L~ 204 (342)
T PF06632_consen 137 DANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL------------YAKFVLVLNEKKAKIRELQRLLA 204 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444444455565555556666778899999999999876 445556666655 45566666
Q ss_pred hhhhc
Q 007791 264 RVKVS 268 (589)
Q Consensus 264 RaKVs 268 (589)
.++..
T Consensus 205 ~~~~~ 209 (342)
T PF06632_consen 205 SAKEE 209 (342)
T ss_dssp HHHHH
T ss_pred Hhhcc
Confidence 66653
No 170
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=34.50 E-value=92 Score=31.74 Aligned_cols=46 Identities=35% Similarity=0.499 Sum_probs=36.9
Q ss_pred HHhhhhHHHHHHHHHHHHHhHHhHHHHHHHH------------------------HHHHHHHHHHHhhhCC
Q 007791 295 EERRLLQAEMQRLKDKLAISERTAKAEAQLK------------------------EKLKLRLKTLEEGLKH 341 (589)
Q Consensus 295 EERR~lQgEmQ~LrDKLAiaERtAKaEaQLk------------------------eKlklRLK~LEE~Lk~ 341 (589)
|||++|++=.+|||.-=+. .|-+.||+.+. ++++-|++.||..|..
T Consensus 4 eE~qLI~~lf~RL~~ae~~-prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 4 EERQLIDDLFSRLKQAEAQ-PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999865444 77778887776 4667899999999865
No 171
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=34.35 E-value=1.3e+02 Score=34.01 Aligned_cols=73 Identities=26% Similarity=0.372 Sum_probs=50.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH-----------HHHHH------------hhHHHHHHHHHHHHHHhhhhhhhhhhh---
Q 007791 26 ELNRLQNQLKEKDRELADAQGE-----------IKALR------------ATEVLKDKAIEELRNEFGKIDGKLRVT--- 79 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aE-----------IKaLr------------~tE~lkdKAveEl~~el~K~deKL~~~--- 79 (589)
+|.|.|..|.|...+|..|+.| =+-|+ ..+..| |-+|.|+.+|+|.+..|..-
T Consensus 253 ~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r-kelE~lR~~L~kAEkele~nS~w 331 (575)
T KOG4403|consen 253 GLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR-KELEQLRVALEKAEKELEANSSW 331 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHhccCC
Confidence 5788899999999999999998 23333 233445 67777777777776665432
Q ss_pred ------Hhh------hhccccccccccchhHH
Q 007791 80 ------QNV------LEHRNLEIKKVTGEKKD 99 (589)
Q Consensus 80 ------E~l------le~KNLEiKkl~~EkK~ 99 (589)
... +|.+++++|+-|-||.-
T Consensus 332 saP~aLQ~wLq~T~E~E~q~~~kkrqnaekql 363 (575)
T KOG4403|consen 332 SAPLALQKWLQLTHEVEVQYYNKKRQNAEKQL 363 (575)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 111 56778888887777643
No 172
>PRK01156 chromosome segregation protein; Provisional
Probab=34.31 E-value=7.6e+02 Score=28.26 Aligned_cols=34 Identities=3% Similarity=0.261 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhccccchhh
Q 007791 242 RDYQRQITELNEEKRTLERELARVKVSANRVATV 275 (589)
Q Consensus 242 rdYqrq~~elnEEkrtLeRELARaKVsaNRVA~v 275 (589)
-+.+..+.+++++...|..++..-+...|..-.+
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~ 445 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSRN 445 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777766666555554433
No 173
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=34.24 E-value=22 Score=30.09 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=31.2
Q ss_pred CCccchhHHHHHHHHHHHHHHhhhhhcccc--cccchHH-HHHHHHH
Q 007791 496 KEDVVSGFLYDRLQKEVILLRKFCESKDSC--LNAKDEE-IKMLIRK 539 (589)
Q Consensus 496 ~~D~VsG~LYD~LQKEVi~LRKac~~Kd~s--L~~KD~~-IeML~KK 539 (589)
+.++++|+|-|+|++.|++..-....+... -.||-.. |.++.+|
T Consensus 14 ~~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~K 60 (83)
T cd08325 14 GKGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARVLVDSVTEK 60 (83)
T ss_pred hHhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 458999999999999999998877777643 3444333 3444444
No 174
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.10 E-value=2.9e+02 Score=24.22 Aligned_cols=89 Identities=26% Similarity=0.357 Sum_probs=64.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHH--------------------------HHH--hc
Q 007791 183 EEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEE--------------------------AVL--AG 234 (589)
Q Consensus 183 edvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEE--------------------------aiL--Ag 234 (589)
+.++-+.+.|..+|+-++.+-.-| ++.+.|.+.+-.||..|.. .++ .+
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l----~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~ 77 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARL----NEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGT 77 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCC
Confidence 345666677777777777665554 4567788888888888876 111 12
Q ss_pred c-----chhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhh
Q 007791 235 G-----SAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATV 275 (589)
Q Consensus 235 G-----aaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~v 275 (589)
| ....|+.++.+++..|.+....|+.++..-+-..|.+-..
T Consensus 78 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~ 123 (129)
T cd00584 78 GYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAE 123 (129)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3457999999999999999999999998877666655443
No 175
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=33.92 E-value=5.1e+02 Score=26.11 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007791 32 NQLKEKDRELADAQGEIKALR 52 (589)
Q Consensus 32 N~lreKdRELg~A~aEIKaLr 52 (589)
..+...+-+|..+++++..++
T Consensus 86 ~~l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 86 LTVAQAQADLALADAQIMTTQ 106 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555544443
No 176
>PF13514 AAA_27: AAA domain
Probab=33.89 E-value=8.8e+02 Score=28.91 Aligned_cols=292 Identities=21% Similarity=0.228 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHH
Q 007791 26 ELNRLQNQLKEKDRELADAQGEIK-ALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQ 104 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aEIK-aLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQ 104 (589)
++..++.++......+..+.+++- +|..... .-.+..+-..-...-+.+......+++-+-++.++..+...+-+..
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~--~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 696 (1111)
T PF13514_consen 619 ELRAARAELEALRARRAAARAALAAALAALGP--AEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAEL 696 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhcc--------CCCCCchhh--------hhccchhhHhhHHHHHHHhhhhHHHHHH------------
Q 007791 105 YAAEATLRRVHANLK--------DDDSVPIES--------VLAPLEADIKTYKKEIAALQEDKKALQR------------ 156 (589)
Q Consensus 105 fAAEATLRRVHa~QK--------Ddd~~PiEa--------IiAPLEAeiK~~r~EIa~LQdDnkALeR------------ 156 (589)
..++..+...+..-. +.+..|-++ =+..+..++..+++.|..++.+-.+++.
T Consensus 697 ~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~ 776 (1111)
T PF13514_consen 697 QEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPD 776 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Q ss_pred -HhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhh------------------hHHHH
Q 007791 157 -HTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQ------------------KVLEV 217 (589)
Q Consensus 157 -ltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQ------------------KV~EV 217 (589)
...+-+.++......|..+-....-++.++.+-..+..+++.++++-.-++.--.. ...+.
T Consensus 777 ~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~ 856 (1111)
T PF13514_consen 777 LPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEER 856 (1111)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHH--HhccchhhhHHHHH----------------HHHHHHHHHHhHHHHHHhhhhhccccchhhhhcc
Q 007791 218 EKLSGTIKELEEAV--LAGGSAANAIRDYQ----------------RQITELNEEKRTLERELARVKVSANRVATVVANE 279 (589)
Q Consensus 218 EKLsqTi~ELEEai--LAgGaaANAvrdYq----------------rq~~elnEEkrtLeRELARaKVsaNRVA~vvANE 279 (589)
..|.+.+..++..+ .++|.....+...- .++..++.+...|..++++++...+.+..--
T Consensus 857 ~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~--- 933 (1111)
T PF13514_consen 857 RELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQEERAELEQELEALEGDD--- 933 (1111)
T ss_pred HHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---
Q ss_pred cccCCCccchhHHHHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 007791 280 WKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLR 331 (589)
Q Consensus 280 WKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAKaEaQLkeKlklR 331 (589)
.+-....++.-+..+|..+-.+.+...-+...=.+..++|..+
T Consensus 934 ---------~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~ 976 (1111)
T PF13514_consen 934 ---------DAAELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREE 976 (1111)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 177
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=33.54 E-value=4.8e+02 Score=30.69 Aligned_cols=102 Identities=24% Similarity=0.370 Sum_probs=0.0
Q ss_pred hccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHh
Q 007791 130 LAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKT 209 (589)
Q Consensus 130 iAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~ 209 (589)
|.-||+|||..|+++...+-++ |-|...|++|++..+...-|.+-|-.=
T Consensus 36 i~~l~~elk~~~~~~~~~~~e~-------------------------------~rl~~~~~~~~~~~~~~e~~~~~lr~e 84 (717)
T PF09730_consen 36 ILELENELKQLRQELSNVQAEN-------------------------------ERLSQLNQELRKECEDLELERKRLREE 84 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHH
Q 007791 210 NRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLEREL 262 (589)
Q Consensus 210 hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeREL 262 (589)
-|.--.-=-.|-|-..||||--+.=---+-..|--|=.|.-|.-|.+-|+-|.
T Consensus 85 ~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~ 137 (717)
T PF09730_consen 85 IKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEI 137 (717)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 178
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.05 E-value=1.8e+02 Score=30.24 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=27.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHH
Q 007791 182 VEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEE 229 (589)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEE 229 (589)
|+++|++=.++.+.|.-.+.|-+.|.+ +|+.|...|.+..+
T Consensus 61 i~~~~~k~~~~~~~i~~~~~eik~l~~-------eI~~~~~~I~~r~~ 101 (265)
T COG3883 61 IEEIQSKIDELQKEIDQSKAEIKKLQK-------EIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 566777777777777777777666654 56666677776655
No 179
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.62 E-value=5.4e+02 Score=26.02 Aligned_cols=91 Identities=33% Similarity=0.499 Sum_probs=53.4
Q ss_pred chhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH-----HHHHHhHHHH
Q 007791 133 LEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIE-----ICQEENRILE 207 (589)
Q Consensus 133 LEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiE-----IcqEENkiLe 207 (589)
+|.|....--+|..||+.|.-|-. +.+..-. =..+|+-.|..|+.|+= |||-+-.+-+
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~----------e~~~lk~-------~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e 155 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLA----------ERDGLKK-------RSKELATEKATLQRQLCEFESLICQRDAILSE 155 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH----------hhhhHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777789999998876533 2222211 23567778888889883 4555555555
Q ss_pred HhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHH
Q 007791 208 KTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLEREL 262 (589)
Q Consensus 208 K~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeREL 262 (589)
++.+ |.+|..+ |--|.-=.++|.-|+.-||--|
T Consensus 156 ~t~~------------i~eL~~~----------ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 156 RTQQ------------IEELKKT----------IEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHhh------------HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5444 3333322 2335555556666666666544
No 180
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=4.5e+02 Score=25.11 Aligned_cols=79 Identities=29% Similarity=0.330 Sum_probs=51.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhcc--------------------------
Q 007791 182 VEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGG-------------------------- 235 (589)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgG-------------------------- 235 (589)
++++-.+=+-|..||+..|-+---|..+ +.||...-.||..|. .++|
T Consensus 8 le~l~a~lq~l~~qie~L~~~i~~l~~~----~~e~~~~~~tl~~lk---~~~~g~E~LVpvGag~fv~~kv~~~~kviV 80 (145)
T COG1730 8 LEELAAQLQILQSQIESLQAQIAALNAA----ISELQTAIETLENLK---GAGEGKEVLVPVGAGLFVKAKVKDMDKVIV 80 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---hcCCCceEEEEcCCCceEEEEeccCceEEE
Confidence 3445455556666777766666555443 345554445544443 3332
Q ss_pred ----------chhhhHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 007791 236 ----------SAANAIRDYQRQITELNEEKRTLERELARVKV 267 (589)
Q Consensus 236 ----------aaANAvrdYqrq~~elnEEkrtLeRELARaKV 267 (589)
.+-.|+.+|++++.+|......|.-+|+..-.
T Consensus 81 ~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~ 122 (145)
T COG1730 81 SIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQ 122 (145)
T ss_pred EcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24579999999999999999999998876543
No 181
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.35 E-value=2.9e+02 Score=23.64 Aligned_cols=77 Identities=27% Similarity=0.283 Sum_probs=0.0
Q ss_pred chhhHhhHHHHHHHhhhhHHHH--HHHhhhhHHHHHHHHHHHHHHHH--HHHhHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 007791 133 LEADIKTYKKEIAALQEDKKAL--QRHTKAKEMALLEAEKILRSALE--RALIVEEVQNLNFELKRQIEICQEENRILEK 208 (589)
Q Consensus 133 LEAeiK~~r~EIa~LQdDnkAL--eRltKsKEaALlEAeril~sAl~--kA~iVedvQN~N~EL~kQiEIcqEENkiLeK 208 (589)
+..++...+.+|..||...+=+ +-|.-..=--|..-|..|..||. |+-=..=+.++...|+++...+++||..|.+
T Consensus 17 ~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~ 96 (100)
T PF01486_consen 17 LQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQ 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 007791 209 T 209 (589)
Q Consensus 209 ~ 209 (589)
.
T Consensus 97 ~ 97 (100)
T PF01486_consen 97 K 97 (100)
T ss_pred H
No 182
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.85 E-value=2.6e+02 Score=28.97 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=26.7
Q ss_pred CchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 007791 21 DPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKID 73 (589)
Q Consensus 21 DPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~d 73 (589)
+|..-++..++.++.....|-..+..|++.|......=++.+++|..+...++
T Consensus 39 ~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 39 SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp ---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666666666655544444445555555555444
No 183
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.79 E-value=1.1e+02 Score=24.10 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=15.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007791 25 LELNRLQNQLKEKDRELADAQGEIKAL 51 (589)
Q Consensus 25 ~ELnRLeN~lreKdRELg~A~aEIKaL 51 (589)
-+++.|++++.+...+...-+.||+.|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555566666666
No 184
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.66 E-value=1.9e+02 Score=23.80 Aligned_cols=74 Identities=22% Similarity=0.419 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhc--ccccCCCccc--h---hHHHHHHh-hhhHHHHHHHHHH
Q 007791 239 NAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVAN--EWKDENDKVM--P---VRQWLEER-RLLQAEMQRLKDK 310 (589)
Q Consensus 239 NAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvAN--EWKD~nDKvM--P---VKqWLEER-R~lQgEmQ~LrDK 310 (589)
|-+..++.++..+...+..|++++.+..++..-+..+-.. =|+--.+-++ | +..=|+++ ..++.+|..|.++
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~ 84 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQ 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999999999999999888777765432 3443333222 2 23334333 3466666666665
Q ss_pred HH
Q 007791 311 LA 312 (589)
Q Consensus 311 LA 312 (589)
+.
T Consensus 85 ~~ 86 (106)
T PF01920_consen 85 LK 86 (106)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 185
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.60 E-value=2.1e+02 Score=27.05 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=59.1
Q ss_pred hhhcCCCc--hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhcccccccc
Q 007791 15 LSLAHPDP--VVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKK 92 (589)
Q Consensus 15 ~~~~~sDP--v~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKk 92 (589)
|..||.|= .+-.++.++.++....-+|..+...|+.|+-+ .+-+++|..++..+..+.+-...-.+.
T Consensus 8 m~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~~~~~~~e~------- 76 (155)
T PF06810_consen 8 MAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNKTAKEEYEA------- 76 (155)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 45667665 45677778888888888999999999999872 456777888777777777644443333
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhh
Q 007791 93 VTGEKKDALAAQYAAEATLRRVHA 116 (589)
Q Consensus 93 l~~EkK~AlAAQfAAEATLRRVHa 116 (589)
+-+.+.=-||.+..|+-..+
T Consensus 77 ----~l~~~~~~~ai~~al~~aka 96 (155)
T PF06810_consen 77 ----KLAQMKKDSAIKSALKGAKA 96 (155)
T ss_pred ----HHHHHHHHHHHHHHHHHcCC
Confidence 12223335677777776554
No 186
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=31.45 E-value=1.6e+02 Score=32.77 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHHhhhhhh-hhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccch
Q 007791 56 VLKDKAIEELRNEFGKIDG-KLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLE 134 (589)
Q Consensus 56 ~lkdKAveEl~~el~K~de-KL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLE 134 (589)
.+-...|+.|..||.++++ |..-+..+++.+=.||..|-|. ..|.-+.-..-.+. --|+.. |.+|.=+|
T Consensus 260 ~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~------~~~s~eer~~F~~~-~~d~~~---E~lL~~hE 329 (619)
T PF03999_consen 260 GLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDK------CHYSEEERQAFTPF-YIDSYT---EELLELHE 329 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHH-hcccch---HHHHHHHH
Confidence 3456677888889988876 5667788888888888887653 22322221111111 112222 88899999
Q ss_pred hhHhhHHHHHHH
Q 007791 135 ADIKTYKKEIAA 146 (589)
Q Consensus 135 AeiK~~r~EIa~ 146 (589)
+||...+.+...
T Consensus 330 ~Ei~~Lk~~~~~ 341 (619)
T PF03999_consen 330 EEIERLKEEYES 341 (619)
T ss_dssp -----HHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998887765443
No 187
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=30.95 E-value=16 Score=42.05 Aligned_cols=187 Identities=27% Similarity=0.364 Sum_probs=0.0
Q ss_pred hhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 007791 129 VLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEK 208 (589)
Q Consensus 129 IiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK 208 (589)
-++-|.-.|+-+...|.-|++| ||+||..|+=-+|+- -||+..-.+|..+.+......-.---
T Consensus 33 ~~~~l~k~~kelq~~i~el~ee---------------Le~Er~~R~kaek~r--~dL~~ELe~l~~~Lee~~~~t~aq~E 95 (859)
T PF01576_consen 33 LRAQLQKKIKELQARIEELEEE---------------LESERQARAKAEKQR--RDLSEELEELKERLEEAGGATQAQIE 95 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhCcHHhhHH
Confidence 4556677788888889999988 899999887666543 36666667777777777777666667
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHhccchhhhH-HHHHHHHHHHHHHHhHHHHHHhhh---hhccccchhhhhcccccCC
Q 007791 209 TNRQKVLEVEKLSGTIKELEEAVLAGGSAANAI-RDYQRQITELNEEKRTLERELARV---KVSANRVATVVANEWKDEN 284 (589)
Q Consensus 209 ~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAv-rdYqrq~~elnEEkrtLeRELARa---KVsaNRVA~vvANEWKD~n 284 (589)
+++..=+|+.+|- ++||++.+..-+++..+ +.|+.++.+|++..-.|.|.-+.+ |.....-. .+-...-
T Consensus 96 ~~kkrE~El~~Lr---r~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~----~dL~~~l 168 (859)
T PF01576_consen 96 LNKKREAELAKLR---RDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAEL----DDLQAQL 168 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHH
Confidence 7888889998886 56799999887777776 567788888887766555432221 11111100 1111112
Q ss_pred CccchhHHHHHH-hhhhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHhhh
Q 007791 285 DKVMPVRQWLEE-RRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGL 339 (589)
Q Consensus 285 DKvMPVKqWLEE-RR~lQgEmQ~LrDKLAiaERtAKaEaQLkeKlklRLK~LEE~L 339 (589)
|.+..-|.=.|. ++-+...++.|+-|+.=++|+..-=...+.||.-.+-.|--.|
T Consensus 169 ~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qL 224 (859)
T PF01576_consen 169 DSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQL 224 (859)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444443 5568888999999988888877665666666666555444333
No 188
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.89 E-value=3.4e+02 Score=24.25 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=31.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhh
Q 007791 236 SAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATV 275 (589)
Q Consensus 236 aaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~v 275 (589)
...-|+.+|.+.+..|++...+|+..|+...=..+.+..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999988766555544433
No 189
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.84 E-value=4.2e+02 Score=23.91 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=51.9
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHH-----HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhH
Q 007791 140 YKKEIAALQEDKKALQRHTKAKEMALL-----EAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKV 214 (589)
Q Consensus 140 ~r~EIa~LQdDnkALeRltKsKEaALl-----EAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV 214 (589)
++++|..+......|++=..--+.++- +....|=...-+.+|--|...-..+|.+.||.|..+.+-|+|----.-
T Consensus 19 lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~ 98 (121)
T PRK09343 19 LQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLR 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555444333333332 233345566778888889999999999999999988888877543333
Q ss_pred HHHHHHHhhHH
Q 007791 215 LEVEKLSGTIK 225 (589)
Q Consensus 215 ~EVEKLsqTi~ 225 (589)
-.++++...|+
T Consensus 99 ~~l~e~q~~l~ 109 (121)
T PRK09343 99 EKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 190
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=29.66 E-value=1.3e+02 Score=32.55 Aligned_cols=68 Identities=22% Similarity=0.437 Sum_probs=58.2
Q ss_pred hcCCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhc
Q 007791 17 LAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRA---TEVLKDKAIEELRNEFGKIDGKLRVTQNVLEH 85 (589)
Q Consensus 17 ~~~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~---tE~lkdKAveEl~~el~K~deKL~~~E~lle~ 85 (589)
++..||..+-+.=++.-+.+.+.++...+..+..+.. ++.++ .-++.|..++..+.+++..+++.|+.
T Consensus 155 m~~~~p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~l~~~l~~ 225 (475)
T PF10359_consen 155 MGDNDPRRVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELK-SDIEELERHISSLKERIEFLENMLED 225 (475)
T ss_pred eecCCcchHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999998888888764 44444 56888999999999999999999876
No 191
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.27 E-value=5.1e+02 Score=24.75 Aligned_cols=34 Identities=15% Similarity=-0.002 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhhcccccccchHHHHHHHHHHH
Q 007791 507 RLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVD 541 (589)
Q Consensus 507 ~LQKEVi~LRKac~~Kd~sL~~KD~~IeML~KKVd 541 (589)
+|-+-|.-|+-.+.-.=. +-+=.+-...|..-+.
T Consensus 263 lLn~nI~~L~~~q~~~~~-~l~~~~~l~nl~~~l~ 296 (302)
T PF10186_consen 263 LLNKNIAQLCFSQGIDVP-LLDPRDTLGNLLNLLW 296 (302)
T ss_pred HHHHHHHHHHHHcCCCCC-cCCchhhHHHHHHHHh
Confidence 577777777764433222 2233444444444333
No 192
>PRK10780 periplasmic chaperone; Provisional
Probab=29.19 E-value=3.6e+02 Score=24.96 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=45.0
Q ss_pred CCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHH
Q 007791 121 DDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQ 200 (589)
Q Consensus 121 dd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcq 200 (589)
..+|....+-+-||++.+.+..|+..++.+-.++-.-...+.+.+-++++.-+ =.+++++.+++......+|
T Consensus 36 ~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~--------~~el~~~~~~~q~~~~~~q 107 (165)
T PRK10780 36 QQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKL--------EKDVMAQRQTFSQKAQAFE 107 (165)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 34666777778888888888888888877766554444445555555554332 2334444455555555444
Q ss_pred HH
Q 007791 201 EE 202 (589)
Q Consensus 201 EE 202 (589)
++
T Consensus 108 q~ 109 (165)
T PRK10780 108 QD 109 (165)
T ss_pred HH
Confidence 43
No 193
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=29.13 E-value=93 Score=29.16 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=0.0
Q ss_pred chhhhhhcCCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--HHHHH-----HHHHHHHHHhhhhh----------
Q 007791 11 GVEELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRAT--EVLKD-----KAIEELRNEFGKID---------- 73 (589)
Q Consensus 11 g~~e~~~~~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~t--E~lkd-----KAveEl~~el~K~d---------- 73 (589)
|-.++|+...-+|.-.|+.|+|.|.+-..--..|+.=|+.+..+ .+++. ..+-+.+++|++.-
T Consensus 22 ~i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~ 101 (146)
T PF08702_consen 22 GIQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIIN 101 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred --hhhhhhHhhhhccccccccc
Q 007791 74 --GKLRVTQNVLEHRNLEIKKV 93 (589)
Q Consensus 74 --eKL~~~E~lle~KNLEiKkl 93 (589)
..++++.+.+++..-+|++|
T Consensus 102 ~~~~I~~Lq~~~~~~~~ki~~L 123 (146)
T PF08702_consen 102 QPSNIRVLQNILRSNRQKIQRL 123 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHH
No 194
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.05 E-value=1.2e+02 Score=24.59 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=28.7
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007791 24 VLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEEL 65 (589)
Q Consensus 24 ~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl 65 (589)
.-++..++.++.+..-+-..-+.||..|-..++..+.|-++|
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~l 71 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQL 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 446666677777777777777777777777777776666554
No 195
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.92 E-value=1.5e+02 Score=31.50 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhcccccc
Q 007791 30 LQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEI 90 (589)
Q Consensus 30 LeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEi 90 (589)
|-|++...-.++..++.++..++-.-......|.+++.+|..+.+.|..+...++.++-.+
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3455666667788888888888777777788999999999999999999988888876543
No 196
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.72 E-value=1.5e+02 Score=31.36 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHH
Q 007791 503 FLYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRK 539 (589)
Q Consensus 503 ~LYD~LQKEVi~LRKac~~Kd~sL~~KD~~IeML~KK 539 (589)
|....|..||-+|.|.-|.|||-+-+||--|--|--+
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 5567789999999999999999999999988777543
No 197
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=28.71 E-value=8.2e+02 Score=26.90 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 007791 30 LQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEF 69 (589)
Q Consensus 30 LeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el 69 (589)
|.+.++..-.++..++.+++.++..+.-.++-++.|+-.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql 198 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQL 198 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554555555554433
No 198
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.70 E-value=4e+02 Score=23.31 Aligned_cols=98 Identities=20% Similarity=0.309 Sum_probs=55.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHHHHhHH
Q 007791 237 AANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISER 316 (589)
Q Consensus 237 aANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKLAiaER 316 (589)
..+-...||.+++.+...+.+|++++...+.+..-+..+- ++..-..+|-.-|=++- .-.=+..|.+++...|-
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~-----~d~~vyk~VG~vlv~~~-~~e~~~~l~~r~e~ie~ 81 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP-----DDTPVYKSVGNLLVKTD-KEEAIQELKEKKETLEL 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CcchhHHHhchhhheec-HHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999998877655444432 33333334444443332 22223455555544433
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhC
Q 007791 317 TAKAEAQLKEKLKLRLKTLEEGLK 340 (589)
Q Consensus 317 tAKaEaQLkeKlklRLK~LEE~Lk 340 (589)
.-+.=..=.+.++-.++.++..|+
T Consensus 82 ~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 82 RVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444555555555544
No 199
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.61 E-value=6.6e+02 Score=25.80 Aligned_cols=106 Identities=18% Similarity=0.102 Sum_probs=66.1
Q ss_pred CCchhhhhccchhhHhhHHHHHHHhhhhHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHh--------HHHHhhhhH
Q 007791 123 SVPIESVLAPLEADIKTYKKEIAALQEDKK----ALQRHTKAKEMALLEAEKILRSALERALI--------VEEVQNLNF 190 (589)
Q Consensus 123 ~~PiEaIiAPLEAeiK~~r~EIa~LQdDnk----ALeRltKsKEaALlEAeril~sAl~kA~i--------VedvQN~N~ 190 (589)
.+||.....+|+.+.|..=++..+||..-. .|++-.|.=+.|.-|+|..-. -..+|-. |+-.+++-.
T Consensus 94 ~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~-k~~ka~~d~~~tk~~~eK~k~~~~ 172 (252)
T cd07675 94 YGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQ-SYERLDNDTNATKSDVEKAKQQLN 172 (252)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCcccCHHHHHHHHHHHH
Confidence 468888889999999998888888887643 344444444677777776533 2222221 356666666
Q ss_pred HHHHHHHHHHHHhH-HHHHhhhhhHH----HHHHHHhhHHHHHH
Q 007791 191 ELKRQIEICQEENR-ILEKTNRQKVL----EVEKLSGTIKELEE 229 (589)
Q Consensus 191 EL~kQiEIcqEENk-iLeK~hRQKV~----EVEKLsqTi~ELEE 229 (589)
.=...+|.|..+.. -|.++|+.+=. .|.-+-..+++|||
T Consensus 173 ~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE 216 (252)
T cd07675 173 LRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDE 216 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 66666677766654 36666666533 34444555555655
No 200
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=28.51 E-value=3.9e+02 Score=23.10 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=33.7
Q ss_pred HhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhcccc
Q 007791 232 LAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANR 271 (589)
Q Consensus 232 LAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNR 271 (589)
...|..+..++.|++-+..|+.........|+.+..-++.
T Consensus 54 ~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~ 93 (141)
T TIGR02473 54 VGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEA 93 (141)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999888765443
No 201
>PRK10865 protein disaggregation chaperone; Provisional
Probab=28.34 E-value=4e+02 Score=31.14 Aligned_cols=21 Identities=38% Similarity=0.801 Sum_probs=15.8
Q ss_pred hhccccchhhhhcccccCCCccchhHH
Q 007791 266 KVSANRVATVVANEWKDENDKVMPVRQ 292 (589)
Q Consensus 266 KVsaNRVA~vvANEWKD~nDKvMPVKq 292 (589)
-|+..-||.||+ .|-. +||..
T Consensus 530 ~v~~~~i~~vv~-~~tg-----ip~~~ 550 (857)
T PRK10865 530 KVTDAEIAEVLA-RWTG-----IPVSR 550 (857)
T ss_pred ccCHHHHHHHHH-HHHC-----CCchh
Confidence 488888999996 6743 68875
No 202
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=28.18 E-value=1.1e+02 Score=27.02 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=26.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhh----hhhHHHH
Q 007791 182 VEEVQNLNFELKRQIEICQEENRILEKTN----RQKVLEV 217 (589)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~h----RQKV~EV 217 (589)
...++..|.+|.+++.-.+.||.||.|.- +.|-.+|
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~~~~~ 112 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAH 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhc
Confidence 34567778889999999999999998865 5554444
No 203
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=28.17 E-value=2.3e+02 Score=32.67 Aligned_cols=111 Identities=26% Similarity=0.337 Sum_probs=0.0
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHhHHHHHh------hhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Q 007791 181 IVEEVQNLNFELKRQIEICQEENRILEKT------NRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEE 254 (589)
Q Consensus 181 iVedvQN~N~EL~kQiEIcqEENkiLeK~------hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEE 254 (589)
+-++.-+.+.+|.. .|+|+..|+++ .+-++-+++.+..++++- +.--|.++++|+.+
T Consensus 194 v~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------i~~l~~~l~~l~~~ 256 (670)
T KOG0239|consen 194 VTNSISELESVLKS----AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKK-------------IQALQQELEELKAE 256 (670)
T ss_pred HHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHH-------------HHHHHHHHHHHHHH
Q ss_pred HhHHHHHHhhhhhccccchhhhhcccccCCCccchhHHHH---HHhhhhHHHHHHHH
Q 007791 255 KRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWL---EERRLLQAEMQRLK 308 (589)
Q Consensus 255 krtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWL---EERR~lQgEmQ~Lr 308 (589)
.+.|..+..--.-...+--..+-.-=++-++.---+..-+ ++||=|..++|+|+
T Consensus 257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 257 LKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 204
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.45 E-value=6e+02 Score=24.93 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 007791 303 EMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLKHV 342 (589)
Q Consensus 303 EmQ~LrDKLAiaERtAKaEaQLkeKlklRLK~LEE~Lk~~ 342 (589)
-+++|++-++ .+.--+-|||..=|..+...+.-.
T Consensus 132 Rl~~L~~~l~------~~dv~~~ek~r~vlea~~~E~~yg 165 (251)
T PF11932_consen 132 RLARLRAMLD------DADVSLAEKFRRVLEAYQIEMEYG 165 (251)
T ss_pred HHHHHHHhhh------ccCCCHHHHHHHHHHHHHHHHHhC
Confidence 3455555543 223334577777777776666543
No 205
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=27.40 E-value=5e+02 Score=23.99 Aligned_cols=96 Identities=23% Similarity=0.271 Sum_probs=59.8
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHH
Q 007791 150 DKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEE 229 (589)
Q Consensus 150 DnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEE 229 (589)
.-+.++||++-+ .---.|+.+.++++--=..|-.+.+. -..|.++..|-|.=+..|=-|++-.|..|+-
T Consensus 5 riRdieRLL~r~-----~Lp~~vR~~~Er~L~~L~~~l~~~~~------~~~~kk~~~kYh~VRFfERkKa~R~lkql~k 73 (114)
T PF10153_consen 5 RIRDIERLLKRK-----DLPADVRVEKERELEALKRELEEAER------KEKEKKMAKKYHMVRFFERKKATRKLKQLEK 73 (114)
T ss_pred HHHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888665 22235677777766433322222222 2347888999998888888888888877766
Q ss_pred HHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhcccc
Q 007791 230 AVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANR 271 (589)
Q Consensus 230 aiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNR 271 (589)
.+=.+. -.++..+|+.+|..++|-.|=
T Consensus 74 ~l~~~~---------------~~~~~~~l~~~l~~~~~DL~Y 100 (114)
T PF10153_consen 74 KLEEAE---------------DKKEIKELEKELHKLEVDLNY 100 (114)
T ss_pred HHHhcc---------------ccccHHHHHHHHHHHHHHHHH
Confidence 554433 224566677777777766553
No 206
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=26.52 E-value=7.2e+02 Score=25.56 Aligned_cols=82 Identities=24% Similarity=0.361 Sum_probs=45.6
Q ss_pred hhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhH
Q 007791 135 ADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKV 214 (589)
Q Consensus 135 AeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV 214 (589)
.+|..+|.+++.+..+..++.+-....+.-|-+-.- -|+++.++-+++..+|. +=.+++++...==.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~----------~i~~~~~~k~~l~~eI~---e~~~~~~~~r~~t~ 275 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEE----------KIEELEEQKQELLAEIA---EAEKIREECRGWTR 275 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCH
Confidence 567778888888777766544433322222221111 13445555555555554 23345554433356
Q ss_pred HHHHHHHhhHHHHHH
Q 007791 215 LEVEKLSGTIKELEE 229 (589)
Q Consensus 215 ~EVEKLsqTi~ELEE 229 (589)
.||..|...+.-||.
T Consensus 276 ~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 276 SEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888888875
No 207
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.49 E-value=1.7e+02 Score=30.35 Aligned_cols=7 Identities=57% Similarity=0.933 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 007791 99 DALAAQY 105 (589)
Q Consensus 99 ~AlAAQf 105 (589)
+++-+|+
T Consensus 116 ~sl~~q~ 122 (314)
T PF04111_consen 116 DSLKNQY 122 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 208
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.41 E-value=90 Score=26.43 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=29.9
Q ss_pred CCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHh
Q 007791 123 SVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHT 158 (589)
Q Consensus 123 ~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRlt 158 (589)
..+...-+..|+++|+.++.+++.+++...+++.-.
T Consensus 65 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 65 KESDSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999999999998887543
No 209
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=26.34 E-value=2.3e+02 Score=24.53 Aligned_cols=43 Identities=40% Similarity=0.486 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Q 007791 29 RLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDG 74 (589)
Q Consensus 29 RLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~de 74 (589)
.++..+...-..|-+|+.+-|+| |.|++|...+...+..+.+.
T Consensus 86 ~~~~~~e~~r~~l~~a~~~~k~l---ekL~ek~~~~~~~~~~r~EQ 128 (141)
T TIGR02473 86 LLQQEVEAKRERLLEARRELKAL---EKLKEKKQKEYRAEEAKREQ 128 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344443333332 45555555555444444433
No 210
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=25.97 E-value=4.7e+02 Score=23.18 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=41.2
Q ss_pred HhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHH
Q 007791 180 LIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEE 229 (589)
Q Consensus 180 ~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEE 229 (589)
+.+..+|..+.++..++.-.+.++.-+-..|+.++.|+..|+.....-.+
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 35677888899999999999999999999999999999988876554433
No 211
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=25.94 E-value=2e+02 Score=27.69 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhh-hhccccccccccchhHHHH
Q 007791 31 QNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNV-LEHRNLEIKKVTGEKKDAL 101 (589)
Q Consensus 31 eN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~l-le~KNLEiKkl~~EkK~Al 101 (589)
+....+-+.+|..|.+|...++. .-++++..|.-.+...++..|+.+-+. .+..++.++.+..+++++|
T Consensus 61 e~l~a~ye~~L~~Ar~eA~~I~~--e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (155)
T PRK06569 61 EKLNKYYNEEIDKTNTEIDRLKK--EKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAI 130 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445577888888888888774 457888899999999999988765443 3334444555555555554
No 212
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.82 E-value=3.6e+02 Score=31.33 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=51.4
Q ss_pred hhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhccCCCC-CchhhhhccchhhHhhHHHHHHHh
Q 007791 69 FGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDS-VPIESVLAPLEADIKTYKKEIAAL 147 (589)
Q Consensus 69 l~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~QKDdd~-~PiEaIiAPLEAeiK~~r~EIa~L 147 (589)
.-|.|.+|+..|.+|||||=++-+++-. |-.-|-.--|--| |-+.-.|--||-++--|+.|..+.
T Consensus 375 glk~ds~Lk~leIalEqkkEec~kme~q--------------LkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~ka 440 (654)
T KOG4809|consen 375 GLKRDSKLKSLEIALEQKKEECSKMEAQ--------------LKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKA 440 (654)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4488999999999999999888876543 3333333333222 457778889999999999998887
Q ss_pred hhhHH
Q 007791 148 QEDKK 152 (589)
Q Consensus 148 QdDnk 152 (589)
|-.-+
T Consensus 441 qaevd 445 (654)
T KOG4809|consen 441 QAEVD 445 (654)
T ss_pred HHHHH
Confidence 75443
No 213
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=25.80 E-value=6.4e+02 Score=24.71 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=8.9
Q ss_pred hccchhhHhhHHHHHHHh
Q 007791 130 LAPLEADIKTYKKEIAAL 147 (589)
Q Consensus 130 iAPLEAeiK~~r~EIa~L 147 (589)
|.-||..++.+++-....
T Consensus 94 i~~lE~~l~ea~~~~ee~ 111 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEA 111 (237)
T ss_dssp HHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555444333
No 214
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=25.58 E-value=1.2e+03 Score=27.86 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=12.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007791 26 ELNRLQNQLKEKDRELADAQGEIKALR 52 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aEIKaLr 52 (589)
++..++..+.........+..++..+.
T Consensus 531 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1047)
T PRK10246 531 RLDALEKEVKKLGEEGAALRGQLDALT 557 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444444444333
No 215
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.50 E-value=9.2e+02 Score=26.44 Aligned_cols=122 Identities=24% Similarity=0.225 Sum_probs=65.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhH-----
Q 007791 183 EEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRT----- 257 (589)
Q Consensus 183 edvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrt----- 257 (589)
+.++.+=.+|...|...++.-.+.--.+=.+.++.|.+ .++|++..- |.+-.-.|.++..++.+..++
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~---~~~L~~~~~----A~~~~~~~l~~~~e~~~~l~l~~~~~ 230 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIE---RQELEERPK----ALRHYIEYLRESGELQEQLELLKAEG 230 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666665544433322222233333332 445555544 233444566666665555444
Q ss_pred --HHHHHhhhhhccccchhh---hhccccc-----CCCcc---chhHHHHHHhhhhHHHHHHHHHHH
Q 007791 258 --LERELARVKVSANRVATV---VANEWKD-----ENDKV---MPVRQWLEERRLLQAEMQRLKDKL 311 (589)
Q Consensus 258 --LeRELARaKVsaNRVA~v---vANEWKD-----~nDKv---MPVKqWLEERR~lQgEmQ~LrDKL 311 (589)
.+.||.--|+.|.|+-.. ..+.-|. +.|.- |-..+-=.||-+++.|||.|+..|
T Consensus 231 ~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 231 ESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 455555556555554321 1122333 22220 224556679999999999999988
No 216
>COG5606 Uncharacterized conserved small protein [Function unknown]
Probab=25.32 E-value=53 Score=29.67 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.0
Q ss_pred ccchhHHHHHHhhhhHHHHHH
Q 007791 286 KVMPVRQWLEERRLLQAEMQR 306 (589)
Q Consensus 286 KvMPVKqWLEERR~lQgEmQ~ 306 (589)
-+|-|++|++.+.|.|.|+-.
T Consensus 29 l~~~i~~~i~q~~l~Q~qiae 49 (91)
T COG5606 29 LMMAIKQWIEQAALSQAQIAE 49 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999854
No 217
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=25.19 E-value=6.7e+02 Score=24.77 Aligned_cols=35 Identities=37% Similarity=0.529 Sum_probs=25.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007791 26 ELNRLQNQLKEKDRELADAQGEIKALRATEVLKDK 60 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdK 60 (589)
-++.|+.+|-++..+++..+.++++|+---.+|..
T Consensus 48 q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~ 82 (206)
T PF14988_consen 48 QTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQ 82 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35677888888888888888888887766666543
No 218
>PF14992 TMCO5: TMCO5 family
Probab=25.02 E-value=8.4e+02 Score=25.84 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=26.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHhH--HHHHHhhhhh
Q 007791 235 GSAANAIRDYQRQITELNEEKRT--LERELARVKV 267 (589)
Q Consensus 235 GaaANAvrdYqrq~~elnEEkrt--LeRELARaKV 267 (589)
..+||.++-||..+..|.++|.+ ||+|+..+--
T Consensus 147 eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~q~ 181 (280)
T PF14992_consen 147 EDQANEIKKLKEKLRRMEEEKEMLLLEKELSKYQM 181 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45999999999999999888765 6777766543
No 219
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.95 E-value=6.6e+02 Score=24.55 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHH
Q 007791 182 VEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERE 261 (589)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRE 261 (589)
|.++.-+=....+.|.-.+.||+-|-.--.+--.||+.|..-+...+-.-.+-..+=.-+...+.++..|..|-..|+.-
T Consensus 36 i~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr 115 (201)
T PF13851_consen 36 IAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQR 115 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhh
Q 007791 262 LARV 265 (589)
Q Consensus 262 LARa 265 (589)
+..+
T Consensus 116 ~~kl 119 (201)
T PF13851_consen 116 FEKL 119 (201)
T ss_pred HHHH
No 220
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=24.81 E-value=1.4e+02 Score=34.59 Aligned_cols=47 Identities=26% Similarity=0.339 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Q 007791 28 NRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDG 74 (589)
Q Consensus 28 nRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~de 74 (589)
..|+..|+.||-||..-++.++.|+..--..+-+|.+|++|+.|+.-
T Consensus 27 ~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 27 PQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 35888999999999999999999999988899999999999988765
No 221
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=24.55 E-value=1.6e+02 Score=25.44 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHhhhhh-------HHHhhHHhhHHHHHh
Q 007791 505 YDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVDALTKA-------IEAESKKIKREAAAR 561 (589)
Q Consensus 505 YD~LQKEVi~LRKac~~Kd~sL~~KD~~IeML~KKVdtLtKA-------mEVE~KKmrRE~Aa~ 561 (589)
||.+..|.-+++..+.+=+..+..--.+|.|+-.+|-.|-.+ .|-|...+|+|..++
T Consensus 13 f~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 13 FENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777778888888888888888999999999999999987654 355566666555443
No 222
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=24.52 E-value=1.4e+03 Score=28.35 Aligned_cols=203 Identities=21% Similarity=0.246 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhcccccccccc-------------chhHHHHHH
Q 007791 37 KDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVT-------------GEKKDALAA 103 (589)
Q Consensus 37 KdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~-------------~EkK~AlAA 103 (589)
.+-++-.-.+||+-+-.+.|..+-.+.....++...+.++...-.-....|-+++.+. +..|+-+++
T Consensus 634 ~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~ 713 (1072)
T KOG0979|consen 634 IEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQEEEYAA 713 (1072)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567888888888887777777777777666666655544444444444332 344455555
Q ss_pred HHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 007791 104 QYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVE 183 (589)
Q Consensus 104 QfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVe 183 (589)
++|+.- +|.+..-++.+-.-++.-.|+.-..|...-.+..-++-. .+-+||++-+.. ++
T Consensus 714 ~~~~~I---------~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~-----~~~iea~~~i~~-------~e 772 (1072)
T KOG0979|consen 714 SEAKKI---------LDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSN-----KNNIEAERKIEK-------LE 772 (1072)
T ss_pred HHHHHH---------HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----HHHHHHHHHHHH-------HH
Confidence 555421 111112223333333333333333333332222211111 122445554443 33
Q ss_pred HHhhh----hHHHHHHHHHHHHHhHHHHH------------------hhhh--hHHHHHHHHhhHHHHHHHHHh------
Q 007791 184 EVQNL----NFELKRQIEICQEENRILEK------------------TNRQ--KVLEVEKLSGTIKELEEAVLA------ 233 (589)
Q Consensus 184 dvQN~----N~EL~kQiEIcqEENkiLeK------------------~hRQ--KV~EVEKLsqTi~ELEEaiLA------ 233 (589)
|.+++ =..|+.+++-|..+-.=+-+ ..++ ..-|...+-.|+.||+.+|.-
T Consensus 773 ~~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~ 852 (1072)
T KOG0979|consen 773 DNISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRAL 852 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 33333 24566777777766543332 2233 334555666788888777654
Q ss_pred --ccchhhhHHHHHHHHHHHHHHHhHHHHHHhh
Q 007791 234 --GGSAANAIRDYQRQITELNEEKRTLERELAR 264 (589)
Q Consensus 234 --gGaaANAvrdYqrq~~elnEEkrtLeRELAR 264 (589)
.+.--+||..|- ...+|.++|+-.|.+
T Consensus 853 ~~~n~ne~~vq~y~----~r~~el~~l~~~~~~ 881 (1072)
T KOG0979|consen 853 KFENVNEDAVQQYE----VREDELRELETKLEK 881 (1072)
T ss_pred HHhcCChHHHHHHH----HHHHHHHHHHhhhhh
Confidence 444445665553 333444455444443
No 223
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.50 E-value=4.5e+02 Score=22.45 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=58.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHH---------------------------HHhc-
Q 007791 183 EEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEA---------------------------VLAG- 234 (589)
Q Consensus 183 edvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEa---------------------------iLAg- 234 (589)
+++..+-+.|..+|+-++....-| ++.+.|++.+-.+|..|..+ |.-|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l----~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~ 77 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKL----EAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGT 77 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecC
Confidence 345555566666666666665443 34566777777777777632 1122
Q ss_pred c-----chhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccch
Q 007791 235 G-----SAANAIRDYQRQITELNEEKRTLERELARVKVSANRVA 273 (589)
Q Consensus 235 G-----aaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA 273 (589)
| ....|+.++.+++..++.....|+.++....-..+.+-
T Consensus 78 ~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 78 GVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34679999999999999999999998887665554443
No 224
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.22 E-value=6.9e+02 Score=24.53 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhH
Q 007791 27 LNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKK 98 (589)
Q Consensus 27 LnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK 98 (589)
++.+.+........=...|..|-.+-....--..-++.|..++.-+.....-++.++.+.+-+|..|+....
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554555555555544333333344455555555555555555555555555554444433
No 225
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.63 E-value=1.1e+03 Score=29.44 Aligned_cols=68 Identities=26% Similarity=0.322 Sum_probs=44.6
Q ss_pred hHhhHHHHHHHhhhhHHHHH-----------HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhH
Q 007791 136 DIKTYKKEIAALQEDKKALQ-----------RHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENR 204 (589)
Q Consensus 136 eiK~~r~EIa~LQdDnkALe-----------RltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENk 204 (589)
|+-.|+.....|.+||++|- ++-+.-|-+=+|.+-| + ---=.+|++-+|--+..|++-.|+||-
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseii-q----lkqkl~dm~~erdtdr~kteeL~eEns 332 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEII-Q----LKQKLDDMRSERDTDRHKTEELHEENS 332 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHH-H----HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66678888889999988862 2222222233333321 1 112368899999999999999999997
Q ss_pred HHHH
Q 007791 205 ILEK 208 (589)
Q Consensus 205 iLeK 208 (589)
-|.-
T Consensus 333 tLq~ 336 (1195)
T KOG4643|consen 333 TLQV 336 (1195)
T ss_pred HHHH
Confidence 7654
No 226
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.63 E-value=1.5e+03 Score=28.33 Aligned_cols=163 Identities=27% Similarity=0.341 Sum_probs=83.8
Q ss_pred HHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccch-hhHhhH
Q 007791 62 IEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLE-ADIKTY 140 (589)
Q Consensus 62 veEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLE-AeiK~~ 140 (589)
++.|+.|+..+-+.--..+.-++.|...+-.++.......+-----|+-|-- -+.+=+.|=| -.++..
T Consensus 722 ~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~s-----------el~sqLt~ee~e~l~kL 790 (1200)
T KOG0964|consen 722 HEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGS-----------ELFSQLTPEELERLSKL 790 (1200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-----------HHHhhcCHHHHHHHHHh
Confidence 4556666666665555555556665555555544433322221111221111 1112223322 235666
Q ss_pred HHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHH
Q 007791 141 KKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKL 220 (589)
Q Consensus 141 r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKL 220 (589)
..||..|+..+.|+-+ |..=++ +..+||+ -|-|--|.+++.-.+-|-.=+.-..|+-.++-++.
T Consensus 791 n~eI~~l~~kl~~~~~-----er~~~~---~rk~~le--------~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~ 854 (1200)
T KOG0964|consen 791 NKEINKLSVKLRALRE-----ERIDIE---TRKTALE--------ANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKS 854 (1200)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHH---HHHHHHH--------HHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHH
Confidence 6677777766665532 111111 1122222 23455677777777777777777788877777654
Q ss_pred --HhhHHHHHHHHHhccchhhhHHHHHHHHHHH
Q 007791 221 --SGTIKELEEAVLAGGSAANAIRDYQRQITEL 251 (589)
Q Consensus 221 --sqTi~ELEEaiLAgGaaANAvrdYqrq~~el 251 (589)
..--..+|.+++-.+..-+-+-+--.++.++
T Consensus 855 el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~ 887 (1200)
T KOG0964|consen 855 ELESEEKRVEAAILELKTLQDSIDKKKAEIKEI 887 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445567888888775544444444444433
No 227
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.50 E-value=1.4e+02 Score=30.22 Aligned_cols=60 Identities=27% Similarity=0.465 Sum_probs=42.2
Q ss_pred CCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhcc
Q 007791 20 PDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHR 86 (589)
Q Consensus 20 sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~K 86 (589)
.|-.+-+++-|+.+++.+..+|..|+....+|+ |=++++.+|...+-|+-..+.++++..
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~-------Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALK-------KQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 477788888888888888888888888888876 445566666665555555555555543
No 228
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.28 E-value=1.4e+03 Score=27.74 Aligned_cols=129 Identities=21% Similarity=0.266 Sum_probs=83.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhHH-------H--HHHHHHHH--------------HHHhhhhhhhhhhhHhhh
Q 007791 27 LNRLQNQLKEKDRELADAQGEIKALRATEV-------L--KDKAIEEL--------------RNEFGKIDGKLRVTQNVL 83 (589)
Q Consensus 27 LnRLeN~lreKdRELg~A~aEIKaLr~tE~-------l--kdKAveEl--------------~~el~K~deKL~~~E~ll 83 (589)
+.-||..|.-.-||-..+.-|||.||-.-+ | ||..|.-| +.-++|+.-|.+-.|+++
T Consensus 411 va~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~ 490 (961)
T KOG4673|consen 411 VATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLE 490 (961)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 344566666556666677777776663321 1 33334332 234668888889999999
Q ss_pred hccccccccccchh---HHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhh
Q 007791 84 EHRNLEIKKVTGEK---KDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKA 160 (589)
Q Consensus 84 e~KNLEiKkl~~Ek---K~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKs 160 (589)
+.+|=-|++|..|- |..|++--+.|.+++- -|--+-|+++....+.+.+|-+-.+|+--.-+
T Consensus 491 ~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E---------------~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a 555 (961)
T KOG4673|consen 491 EKKGELITKLQSEENKLKSILRDKEETEKLLQE---------------TIEKHQAELTRQKDYYSNSRALAAALEAQALA 555 (961)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99998999998764 6677888777777763 24456667776666666666666666555555
Q ss_pred hHHHHHHHHH
Q 007791 161 KEMALLEAEK 170 (589)
Q Consensus 161 KEaALlEAer 170 (589)
-++++-+|..
T Consensus 556 ~qat~d~a~~ 565 (961)
T KOG4673|consen 556 EQATNDEARS 565 (961)
T ss_pred HHHhhhhhhh
Confidence 5555555544
No 229
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.94 E-value=1.5e+02 Score=27.86 Aligned_cols=102 Identities=26% Similarity=0.272 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHH--HHHHHHHHHHhhhccCCCCCchhhhhccchhhH
Q 007791 60 KAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQ--YAAEATLRRVHANLKDDDSVPIESVLAPLEADI 137 (589)
Q Consensus 60 KAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQ--fAAEATLRRVHa~QKDdd~~PiEaIiAPLEAei 137 (589)
||+-+|....-.-..+++..+-+.+.+|--.|....-+|.-+--- -|-=..+-|..- .-|..+|..-||++.
T Consensus 3 kaf~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~------l~dk~a~~s~leak~ 76 (114)
T KOG3501|consen 3 KAFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFM------LSDKAAVRSHLEAKM 76 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------cCcHHHHHHHHHHHH
Confidence 455555555555566666666666666655554444444333210 011112222211 247889999999999
Q ss_pred hhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 007791 138 KTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRS 174 (589)
Q Consensus 138 K~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~s 174 (589)
|..+.-|..||..+--||+ .+.|||.-||-
T Consensus 77 k~see~IeaLqkkK~YlEk-------~v~eaE~nLre 106 (114)
T KOG3501|consen 77 KSSEEKIEALQKKKTYLEK-------TVSEAEQNLRE 106 (114)
T ss_pred HhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 9999999999998888876 45677777764
No 230
>PRK11519 tyrosine kinase; Provisional
Probab=22.90 E-value=3.4e+02 Score=30.76 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=10.6
Q ss_pred hhhhhcCCCchhHh
Q 007791 13 EELSLAHPDPVVLE 26 (589)
Q Consensus 13 ~e~~~~~sDPv~~E 26 (589)
.++.+.++||....
T Consensus 230 i~Is~~~~dP~~Aa 243 (719)
T PRK11519 230 LSLTYTGEDREQIR 243 (719)
T ss_pred EEEEEEcCCHHHHH
Confidence 56668899998765
No 231
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=22.66 E-value=6.3e+02 Score=25.83 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 007791 304 MQRLKDKLAISERTAKAEAQLKEKLKLRLKTLE 336 (589)
Q Consensus 304 mQ~LrDKLAiaERtAKaEaQLkeKlklRLK~LE 336 (589)
||-|+++.+-..-...-=+.=+.+++.||.-|+
T Consensus 107 i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 107 IQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666655544433333344567888888877
No 232
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.52 E-value=1.9e+02 Score=25.40 Aligned_cols=46 Identities=33% Similarity=0.469 Sum_probs=32.7
Q ss_pred cchhHHHHHH-------hhhhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 007791 287 VMPVRQWLEE-------RRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLKHVS 343 (589)
Q Consensus 287 vMPVKqWLEE-------RR~lQgEmQ~LrDKLAiaERtAKaEaQLkeKlklRLK~LEE~Lk~~~ 343 (589)
|.|+==||-= +.+-++|+|+|.+=..-| +|++-|+.+||.-|-...
T Consensus 17 VaPiWL~LHY~sk~~~~~~Ls~~d~~~L~~L~~~A-----------~rm~~RI~tLE~ILDae~ 69 (75)
T PRK09458 17 VAPIWLWLHYRSKRQGSQGLSQEEQQRLAQLTEKA-----------ERMRERIQALEAILDAEH 69 (75)
T ss_pred HHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcccC
Confidence 4577444432 346788999998766555 467899999999987763
No 233
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.51 E-value=38 Score=29.19 Aligned_cols=41 Identities=34% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-hHHHHhhhhHHHHHHHHHH
Q 007791 159 KAKEMALLEAEKILRSALERAL-IVEEVQNLNFELKRQIEIC 199 (589)
Q Consensus 159 KsKEaALlEAeril~sAl~kA~-iVedvQN~N~EL~kQiEIc 199 (589)
..+..|.-+|+.|+..|-..|. ||++-+.+=..|..+++..
T Consensus 78 ~~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~l 119 (131)
T PF05103_consen 78 EIKAEAEEEAEEIIEEAQKEAEEIIEEARAEAERLREEIEEL 119 (131)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778877777664 4555544444444444433
No 234
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.45 E-value=1.1e+03 Score=26.33 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 007791 29 RLQNQLKEKDRELADAQGEIKALR 52 (589)
Q Consensus 29 RLeN~lreKdRELg~A~aEIKaLr 52 (589)
.+..++.+.++++...+.++..+.
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~ 229 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLA 229 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 235
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.17 E-value=3.8e+02 Score=23.35 Aligned_cols=91 Identities=24% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHH-------HHhccchhh---------------
Q 007791 182 VEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEA-------VLAGGSAAN--------------- 239 (589)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEa-------iLAgGaaAN--------------- 239 (589)
++.++.+-+.|..||+.++..-.-| ...+.+++..-.+|..|... =|.+|..+.
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l----~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~ 76 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAAL----RALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGS 76 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCC
Q ss_pred ----------hHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhh
Q 007791 240 ----------AIRDYQRQITELNEEKRTLERELARVKVSANRVATVV 276 (589)
Q Consensus 240 ----------AvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vv 276 (589)
|..+|.+.+..|++....|+..|+..+=.++.+..++
T Consensus 77 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 77 GYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 236
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.98 E-value=1.1e+02 Score=27.18 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=19.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHHHHhhhhh
Q 007791 183 EEVQNLNFELKRQIEICQEENRILEKTNRQK 213 (589)
Q Consensus 183 edvQN~N~EL~kQiEIcqEENkiLeK~hRQK 213 (589)
++++.+|..|..+|+-.+.--..+|+.-|.+
T Consensus 44 ~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~ 74 (105)
T PRK00888 44 AKLKARNDQLFAEIDDLKGGQEAIEERARNE 74 (105)
T ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 4566677777777777666445666666654
No 237
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.37 E-value=8.7e+02 Score=24.68 Aligned_cols=91 Identities=27% Similarity=0.494 Sum_probs=62.6
Q ss_pred HhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH---HHHhHHHHHhhhhhHHHHHHHHh
Q 007791 146 ALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEIC---QEENRILEKTNRQKVLEVEKLSG 222 (589)
Q Consensus 146 ~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIc---qEENkiLeK~hRQKV~EVEKLsq 222 (589)
+|...-+.++||.|-+- |= -.|+.++++++. .|++|..+. +-|.||..+.|.-+..|--|.-.
T Consensus 28 ~iK~qiRd~eRlLkk~~---LP--~~Vr~e~er~L~---------~Lk~ql~~~~l~~k~rkif~ryrkVRFFErkKaeR 93 (199)
T KOG4484|consen 28 SIKNQIRDLERLLKKKD---LP--PEVREELERKLQ---------DLKKQLDNHELLAKERKIFKRYRKVRFFERKKAER 93 (199)
T ss_pred HHHHHHHHHHHHHhhcc---CC--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677899988642 22 246777887763 445555444 34678899999888999999999
Q ss_pred hHHHHHHHHHhccchhhhHHH--HHHHHHHHHH
Q 007791 223 TIKELEEAVLAGGSAANAIRD--YQRQITELNE 253 (589)
Q Consensus 223 Ti~ELEEaiLAgGaaANAvrd--Yqrq~~elnE 253 (589)
.|+.||-.+=-+|+- |.| .|.|...+.+
T Consensus 94 ~irrLeK~~keS~ad---~kd~~i~~qlrk~ki 123 (199)
T KOG4484|consen 94 SIRRLEKLIKESGAD---VKDKQIQQQLRKLKI 123 (199)
T ss_pred HHHHHHHHHHhhccc---hhhHHHHHHHHHHHH
Confidence 999999999988874 334 4444444433
No 238
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=21.28 E-value=8.3e+02 Score=24.39 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHH
Q 007791 61 AIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYA 106 (589)
Q Consensus 61 AveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfA 106 (589)
.++....++......+...++|+.+.-.--..+.+-+-+-..|+..
T Consensus 115 ~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~ 160 (331)
T PRK03598 115 AVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT 160 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455566666666667777777766544333343333333333333
No 239
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.28 E-value=1.2e+03 Score=26.25 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=9.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 007791 26 ELNRLQNQLKEKDRELADAQGEIK 49 (589)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aEIK 49 (589)
+|+.|+.++..-.-++..|++...
T Consensus 238 ~L~~l~~ql~~a~~~~~~a~a~~~ 261 (754)
T TIGR01005 238 QLAELNTELSRARANRAAAEGTAD 261 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333333333
No 240
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=21.07 E-value=1.8e+02 Score=24.42 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=38.1
Q ss_pred CchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007791 21 DPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEEL 65 (589)
Q Consensus 21 DPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl 65 (589)
-=...++++++++......|-+.-..|+..|...++...-|.+.|
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~~~L 82 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIAREKL 82 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHcC
Confidence 334567999999999999999999999999999999988887654
No 241
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.82 E-value=1.7e+03 Score=27.90 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=20.4
Q ss_pred HHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHH
Q 007791 65 LRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQ 104 (589)
Q Consensus 65 l~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQ 104 (589)
|..|..+++.++...|+-.-+-.-..|-|..|||.+-..-
T Consensus 158 lK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k 197 (1141)
T KOG0018|consen 158 LKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGK 197 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhH
Confidence 3344455555555555554444444555566665554333
No 242
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=20.76 E-value=8.7e+02 Score=28.16 Aligned_cols=124 Identities=26% Similarity=0.384 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHh----hhccCCCCCchhhhhccch
Q 007791 59 DKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVH----ANLKDDDSVPIESVLAPLE 134 (589)
Q Consensus 59 dKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVH----a~QKDdd~~PiEaIiAPLE 134 (589)
.|.-.|+-.=|+|++|.+.+.+...| ++| .+||| -||
T Consensus 4 RKLq~eIdr~lkKv~Egve~Fd~i~e----------------------------k~~~~~n~sqke-----------K~e 44 (575)
T KOG2150|consen 4 RKLQQEIDRCLKKVDEGVEIFDEIYE----------------------------KLHSANNVSQKE-----------KLE 44 (575)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHH----------------------------HHHhcCChhHHH-----------HHH
Confidence 45556666667788887777665544 333 35555 378
Q ss_pred hhHhhHHHHHHHhhhhHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHh---HHH
Q 007791 135 ADIKTYKKEIAALQEDKKALQRH-----TKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEEN---RIL 206 (589)
Q Consensus 135 AeiK~~r~EIa~LQdDnkALeRl-----tKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEEN---kiL 206 (589)
++||. ||-+||---.-+--. .|-| ..|++..|.|..+++|=-+||-. ||----..|=- -+|
T Consensus 45 ~DLKk---EIKKLQRlRdQIKtW~ss~dIKDK-~~L~d~RrlIE~~MErfK~vEke-------~KtKa~SkegL~~~~kl 113 (575)
T KOG2150|consen 45 SDLKK---EIKKLQRLRDQIKTWQSSSDIKDK-DSLLDNRRLIEQRMERFKAVEKE-------MKTKAFSKEGLSAAEKL 113 (575)
T ss_pred HHHHH---HHHHHHHHHHHHHhhhcccccccH-HHHHHHHHHHHHHHHHHHHHHHH-------hhccccchhhccccccC
Confidence 88774 777777322111111 1333 67899999998888876666532 11000000000 012
Q ss_pred HHhhhhhHHHHHHHHhhHHHHHHHHH
Q 007791 207 EKTNRQKVLEVEKLSGTIKELEEAVL 232 (589)
Q Consensus 207 eK~hRQKV~EVEKLsqTi~ELEEaiL 232 (589)
|=-.+-|---++=|+++|.|||.-|=
T Consensus 114 DPkEkek~d~~~wi~~~ideLe~q~d 139 (575)
T KOG2150|consen 114 DPKEKEKRDTMDWISNQIDELERQVD 139 (575)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556667888888876553
No 243
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=20.59 E-value=44 Score=28.66 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=18.9
Q ss_pred hhccccchhhhhcccccCCCccchhHHHHHHhhh
Q 007791 266 KVSANRVATVVANEWKDENDKVMPVRQWLEERRL 299 (589)
Q Consensus 266 KVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~ 299 (589)
.+.+|.++--| .=--|-+-+||+||.+++|
T Consensus 58 ~~~V~~~~g~i----~IkG~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 58 DVRVNELTGHI----EIKGDHVEEVKKWLLEKGF 87 (87)
T ss_pred ceEEeecCCEE----EEcCccHHHHHHHHHHCcC
Confidence 34555544332 1224457799999999987
Done!