Query 007792
Match_columns 589
No_of_seqs 537 out of 3850
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0415 Predicted peptidyl pro 100.0 7.4E-78 1.6E-82 581.6 27.0 359 1-374 1-359 (479)
2 KOG0881 Cyclophilin type pepti 100.0 3E-46 6.5E-51 311.2 8.5 153 2-162 11-163 (164)
3 KOG0546 HSP90 co-chaperone CPR 100.0 2.9E-45 6.2E-50 361.2 13.9 157 2-167 14-183 (372)
4 cd01921 cyclophilin_RRM cyclop 100.0 4.3E-44 9.2E-49 333.6 17.2 166 4-169 1-166 (166)
5 cd01923 cyclophilin_RING cyclo 100.0 3.3E-43 7.1E-48 325.0 17.8 157 3-167 2-158 (159)
6 cd01928 Cyclophilin_PPIL3_like 100.0 4.6E-43 1E-47 321.7 17.5 153 1-161 1-153 (153)
7 KOG0884 Similar to cyclophilin 100.0 1.4E-43 3E-48 293.5 11.5 159 1-167 1-160 (161)
8 COG0652 PpiB Peptidyl-prolyl c 100.0 2.1E-42 4.7E-47 312.0 15.3 149 2-162 1-157 (158)
9 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.6E-42 3.4E-47 312.8 14.1 148 7-163 51-203 (217)
10 KOG0883 Cyclophilin type, U bo 100.0 1.2E-42 2.5E-47 340.9 11.0 162 2-171 279-440 (518)
11 cd01927 cyclophilin_WD40 cyclo 100.0 1.6E-41 3.4E-46 310.0 16.2 148 4-159 1-148 (148)
12 KOG0882 Cyclophilin-related pe 100.0 5.3E-42 1.1E-46 343.0 11.0 152 2-161 406-557 (558)
13 cd01925 cyclophilin_CeCYP16-li 100.0 1E-40 2.2E-45 311.9 17.2 161 2-170 7-168 (171)
14 cd01922 cyclophilin_SpCYP2_lik 100.0 1.1E-40 2.3E-45 303.6 16.0 145 4-157 1-145 (146)
15 KOG0879 U-snRNP-associated cyc 100.0 1E-40 2.2E-45 281.4 9.2 151 2-161 16-176 (177)
16 KOG0885 Peptidyl-prolyl cis-tr 100.0 7.7E-40 1.7E-44 320.4 13.0 162 2-171 14-176 (439)
17 PTZ00221 cyclophilin; Provisio 100.0 8.7E-38 1.9E-42 303.2 17.2 158 2-171 54-228 (249)
18 PLN03149 peptidyl-prolyl isome 100.0 7.5E-38 1.6E-42 295.4 16.0 147 7-162 30-186 (186)
19 PRK10791 peptidyl-prolyl cis-t 100.0 1.1E-37 2.4E-42 288.6 16.5 149 3-162 2-163 (164)
20 PRK10903 peptidyl-prolyl cis-t 100.0 1.7E-37 3.7E-42 293.7 16.9 151 1-162 29-189 (190)
21 cd01926 cyclophilin_ABH_like c 100.0 2.3E-37 4.9E-42 288.0 16.4 149 2-160 6-164 (164)
22 PTZ00060 cyclophilin; Provisio 100.0 4.5E-37 9.9E-42 289.9 16.3 151 2-162 21-182 (183)
23 cd01920 cyclophilin_EcCYP_like 100.0 1.6E-36 3.4E-41 279.2 15.5 144 4-158 1-154 (155)
24 cd00317 cyclophilin cyclophili 100.0 3.4E-35 7.4E-40 269.4 16.4 146 4-158 1-146 (146)
25 PF00160 Pro_isomerase: Cyclop 100.0 3.5E-34 7.6E-39 265.5 16.3 151 2-161 1-155 (155)
26 KOG0111 Cyclophilin-type pepti 100.0 7.1E-35 1.5E-39 266.3 10.6 146 7-162 148-297 (298)
27 cd01924 cyclophilin_TLP40_like 100.0 5.8E-34 1.3E-38 266.6 14.3 134 6-142 3-165 (176)
28 KOG0865 Cyclophilin type pepti 99.9 1.7E-28 3.8E-33 223.4 7.7 146 7-162 15-167 (167)
29 KOG0113 U1 small nuclear ribon 99.9 2.3E-20 5E-25 179.2 20.1 91 239-329 98-189 (335)
30 KOG0107 Alternative splicing f 99.8 2.2E-18 4.8E-23 153.7 15.1 111 240-357 8-118 (195)
31 PLN03134 glycine-rich RNA-bind 99.7 5.1E-17 1.1E-21 147.6 14.5 85 240-324 32-116 (144)
32 KOG0126 Predicted RNA-binding 99.6 1.2E-16 2.6E-21 143.2 0.8 80 242-321 35-114 (219)
33 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.3E-14 2.9E-19 152.6 12.7 83 241-323 268-350 (352)
34 KOG4207 Predicted splicing fac 99.6 3.6E-14 7.8E-19 129.9 13.2 81 242-322 13-93 (256)
35 TIGR01659 sex-lethal sex-letha 99.6 1E-13 2.2E-18 143.8 17.5 84 241-324 192-277 (346)
36 PF00076 RRM_1: RNA recognitio 99.6 2.3E-14 4.9E-19 113.5 9.5 70 245-315 1-70 (70)
37 TIGR01659 sex-lethal sex-letha 99.5 2.2E-14 4.8E-19 148.7 11.6 83 239-321 104-186 (346)
38 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 2.2E-14 4.7E-19 151.1 11.4 83 241-323 2-84 (352)
39 KOG0121 Nuclear cap-binding pr 99.5 2.2E-14 4.8E-19 121.5 7.8 81 241-321 35-115 (153)
40 KOG0122 Translation initiation 99.5 4.6E-14 1E-18 132.6 9.6 82 241-322 188-269 (270)
41 KOG0109 RNA-binding protein LA 99.5 1.9E-14 4.2E-19 138.1 7.1 105 241-360 77-181 (346)
42 KOG0149 Predicted RNA-binding 99.5 4.9E-14 1.1E-18 132.1 7.5 80 241-321 11-90 (247)
43 PF14259 RRM_6: RNA recognitio 99.5 4.1E-13 8.8E-18 106.6 9.9 70 245-315 1-70 (70)
44 TIGR01645 half-pint poly-U bin 99.5 2.2E-13 4.7E-18 148.8 10.4 82 241-322 203-284 (612)
45 KOG0130 RNA-binding protein RB 99.4 1.6E-13 3.5E-18 117.3 6.5 81 242-322 72-152 (170)
46 PLN03213 repressor of silencin 99.4 5.4E-13 1.2E-17 136.0 9.9 77 241-321 9-87 (759)
47 TIGR01645 half-pint poly-U bin 99.4 5.8E-13 1.3E-17 145.4 10.9 81 241-321 106-186 (612)
48 PLN03120 nucleic acid binding 99.4 7.6E-13 1.7E-17 128.6 10.4 76 242-321 4-79 (260)
49 TIGR01622 SF-CC1 splicing fact 99.4 1.6E-12 3.4E-17 141.9 13.1 81 241-321 185-265 (457)
50 KOG0117 Heterogeneous nuclear 99.4 2.4E-12 5.1E-17 130.5 11.6 85 240-324 81-166 (506)
51 KOG0148 Apoptosis-promoting RN 99.4 7.4E-13 1.6E-17 126.1 7.2 82 242-323 62-143 (321)
52 TIGR01642 U2AF_lg U2 snRNP aux 99.4 2.6E-12 5.6E-17 142.1 12.5 82 241-322 294-375 (509)
53 PLN03121 nucleic acid binding 99.4 3.3E-12 7.2E-17 122.1 10.7 77 240-320 3-79 (243)
54 KOG0111 Cyclophilin-type pepti 99.4 5.1E-13 1.1E-17 123.3 4.8 83 241-323 9-91 (298)
55 KOG0125 Ataxin 2-binding prote 99.4 2E-12 4.4E-17 126.3 8.9 82 239-322 93-174 (376)
56 smart00362 RRM_2 RNA recogniti 99.3 5.4E-12 1.2E-16 99.4 9.5 72 244-317 1-72 (72)
57 TIGR01648 hnRNP-R-Q heterogene 99.3 4.3E-12 9.4E-17 138.5 10.7 76 241-324 232-309 (578)
58 KOG0131 Splicing factor 3b, su 99.3 1.5E-12 3.3E-17 117.3 5.6 80 241-320 8-87 (203)
59 TIGR01628 PABP-1234 polyadenyl 99.3 4.7E-12 1E-16 141.7 10.9 79 243-321 1-79 (562)
60 TIGR01622 SF-CC1 splicing fact 99.3 7.4E-12 1.6E-16 136.6 11.6 81 240-321 87-167 (457)
61 TIGR01648 hnRNP-R-Q heterogene 99.3 5.3E-12 1.1E-16 137.8 10.0 80 241-321 57-137 (578)
62 smart00360 RRM RNA recognition 99.3 1E-11 2.2E-16 97.4 8.5 71 247-317 1-71 (71)
63 KOG0117 Heterogeneous nuclear 99.3 5.6E-12 1.2E-16 127.8 8.4 75 242-324 259-333 (506)
64 KOG0105 Alternative splicing f 99.3 1.2E-11 2.7E-16 111.4 9.2 79 241-322 5-83 (241)
65 KOG0148 Apoptosis-promoting RN 99.3 1.4E-11 2.9E-16 117.6 9.4 77 239-321 161-237 (321)
66 KOG0145 RNA-binding protein EL 99.3 1.4E-11 3.1E-16 116.6 9.4 86 238-323 37-122 (360)
67 TIGR01628 PABP-1234 polyadenyl 99.3 1.5E-11 3.2E-16 137.7 11.1 83 240-323 283-365 (562)
68 KOG0108 mRNA cleavage and poly 99.3 1E-11 2.2E-16 130.7 8.5 81 243-323 19-99 (435)
69 COG0724 RNA-binding proteins ( 99.3 2E-11 4.3E-16 122.7 10.4 80 242-321 115-194 (306)
70 KOG0114 Predicted RNA-binding 99.2 4.6E-11 1E-15 97.8 9.6 78 241-321 17-94 (124)
71 KOG0145 RNA-binding protein EL 99.2 2.1E-10 4.6E-15 108.7 15.6 82 241-322 277-358 (360)
72 cd00590 RRM RRM (RNA recogniti 99.2 6.3E-11 1.4E-15 93.7 10.1 74 244-318 1-74 (74)
73 KOG0146 RNA-binding protein ET 99.2 1.2E-11 2.7E-16 117.4 5.2 86 238-323 281-366 (371)
74 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 6E-11 1.3E-15 129.8 11.0 79 239-322 272-351 (481)
75 KOG4676 Splicing factor, argin 99.2 3E-13 6.5E-18 134.5 -7.0 64 242-310 151-214 (479)
76 KOG0144 RNA-binding protein CU 99.2 2.7E-11 5.9E-16 122.3 5.7 82 241-323 123-207 (510)
77 KOG0109 RNA-binding protein LA 99.2 5.8E-11 1.3E-15 114.4 7.3 74 243-324 3-76 (346)
78 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1E-10 2.2E-15 127.9 10.3 75 241-321 1-77 (481)
79 KOG0147 Transcriptional coacti 99.2 5.4E-11 1.2E-15 124.1 7.4 79 243-321 279-357 (549)
80 smart00361 RRM_1 RNA recogniti 99.1 1.4E-10 2.9E-15 92.1 8.0 61 256-316 2-69 (70)
81 KOG0127 Nucleolar protein fibr 99.1 1.1E-10 2.5E-15 120.9 9.4 81 241-321 291-377 (678)
82 KOG0124 Polypyrimidine tract-b 99.1 3.2E-11 6.9E-16 119.1 4.7 77 243-319 114-190 (544)
83 KOG0127 Nucleolar protein fibr 99.1 1.9E-10 4.1E-15 119.4 9.4 82 241-323 116-197 (678)
84 PF13893 RRM_5: RNA recognitio 99.1 3E-10 6.4E-15 85.9 8.1 56 259-319 1-56 (56)
85 KOG0131 Splicing factor 3b, su 99.1 1.3E-10 2.8E-15 105.0 6.8 83 239-321 93-176 (203)
86 KOG0144 RNA-binding protein CU 99.1 1.7E-10 3.6E-15 116.7 7.0 81 242-322 34-117 (510)
87 KOG0123 Polyadenylate-binding 99.0 9.8E-10 2.1E-14 114.8 7.6 114 194-321 36-152 (369)
88 KOG4676 Splicing factor, argin 99.0 1.4E-09 3E-14 108.8 7.5 82 243-324 8-92 (479)
89 KOG4208 Nucleolar RNA-binding 98.9 2E-09 4.2E-14 99.6 7.8 82 241-322 48-130 (214)
90 KOG4212 RNA-binding protein hn 98.9 3.8E-09 8.2E-14 107.0 8.9 79 242-321 44-123 (608)
91 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.9E-09 8.5E-14 109.7 8.7 82 242-323 405-486 (940)
92 KOG4206 Spliceosomal protein s 98.9 5.1E-09 1.1E-13 98.5 8.4 81 241-324 8-92 (221)
93 KOG0110 RNA-binding protein (R 98.9 1.3E-09 2.8E-14 116.9 4.6 131 193-323 558-694 (725)
94 KOG0110 RNA-binding protein (R 98.9 4E-09 8.6E-14 113.2 7.6 78 243-320 516-596 (725)
95 KOG4205 RNA-binding protein mu 98.8 3.3E-09 7.2E-14 107.2 5.5 117 208-325 58-179 (311)
96 TIGR01642 U2AF_lg U2 snRNP aux 98.8 2E-08 4.4E-13 111.1 10.0 82 240-321 407-501 (509)
97 KOG0132 RNA polymerase II C-te 98.8 1.3E-08 2.9E-13 109.9 7.7 77 241-323 420-496 (894)
98 KOG0124 Polypyrimidine tract-b 98.7 2E-08 4.3E-13 99.6 7.2 80 242-321 210-289 (544)
99 KOG0123 Polyadenylate-binding 98.7 2.4E-08 5.3E-13 104.4 8.0 75 243-323 2-76 (369)
100 KOG1548 Transcription elongati 98.7 7.3E-08 1.6E-12 95.5 10.7 79 242-321 134-220 (382)
101 KOG0116 RasGAP SH3 binding pro 98.7 6.4E-08 1.4E-12 101.6 10.0 80 243-323 289-368 (419)
102 KOG0153 Predicted RNA-binding 98.7 4.1E-08 8.8E-13 97.4 7.9 74 242-321 228-302 (377)
103 KOG4205 RNA-binding protein mu 98.7 1.5E-08 3.2E-13 102.5 4.8 81 241-322 5-85 (311)
104 KOG0533 RRM motif-containing p 98.6 1E-07 2.2E-12 92.7 8.5 82 239-321 80-161 (243)
105 KOG4212 RNA-binding protein hn 98.6 8.2E-08 1.8E-12 97.5 6.8 76 239-319 533-608 (608)
106 KOG4209 Splicing factor RNPS1, 98.6 1.2E-07 2.6E-12 92.5 7.4 83 239-322 98-180 (231)
107 KOG0106 Alternative splicing f 98.6 4.7E-08 1E-12 93.0 4.0 72 243-322 2-73 (216)
108 KOG0151 Predicted splicing reg 98.5 1.4E-07 2.9E-12 101.2 7.0 83 239-321 171-256 (877)
109 KOG4454 RNA binding protein (R 98.5 4E-08 8.6E-13 91.5 2.0 80 240-321 7-86 (267)
110 KOG0146 RNA-binding protein ET 98.5 2.2E-07 4.7E-12 88.9 6.8 81 241-322 18-101 (371)
111 KOG1995 Conserved Zn-finger pr 98.5 5.4E-06 1.2E-10 83.3 16.1 85 239-323 63-155 (351)
112 KOG1457 RNA binding protein (c 98.4 1.2E-06 2.7E-11 81.8 9.9 84 242-325 34-121 (284)
113 PF04059 RRM_2: RNA recognitio 98.3 3.1E-06 6.6E-11 70.8 8.7 79 243-321 2-86 (97)
114 KOG0226 RNA-binding proteins [ 98.3 5.5E-07 1.2E-11 85.9 4.6 82 238-319 186-267 (290)
115 KOG0882 Cyclophilin-related pe 98.2 8.9E-07 1.9E-11 90.8 4.6 157 3-162 101-262 (558)
116 KOG0120 Splicing factor U2AF, 98.2 1.1E-06 2.4E-11 93.5 4.4 82 241-322 288-369 (500)
117 KOG4660 Protein Mei2, essentia 98.1 1.5E-06 3.3E-11 91.6 3.4 70 241-315 74-143 (549)
118 KOG2416 Acinus (induces apopto 98.1 5.2E-06 1.1E-10 87.8 7.2 83 233-321 435-521 (718)
119 KOG4849 mRNA cleavage factor I 98.1 2.6E-06 5.7E-11 84.3 3.9 81 238-318 76-158 (498)
120 KOG1190 Polypyrimidine tract-b 97.9 2.8E-05 6.1E-10 79.0 8.5 76 242-322 297-373 (492)
121 KOG1457 RNA binding protein (c 97.9 7E-06 1.5E-10 76.9 3.8 65 241-309 209-273 (284)
122 KOG0147 Transcriptional coacti 97.9 5.7E-06 1.2E-10 87.1 2.3 79 242-321 179-257 (549)
123 KOG4206 Spliceosomal protein s 97.8 5.3E-05 1.1E-09 71.8 7.7 79 237-320 141-220 (221)
124 PF11608 Limkain-b1: Limkain b 97.8 7.8E-05 1.7E-09 59.5 6.4 69 243-321 3-76 (90)
125 KOG4211 Splicing factor hnRNP- 97.7 9.3E-05 2E-09 77.2 8.4 81 242-326 10-90 (510)
126 KOG4210 Nuclear localization s 97.7 4.1E-05 8.8E-10 77.5 5.1 83 241-324 183-266 (285)
127 COG5175 MOT2 Transcriptional r 97.6 0.00029 6.4E-09 69.9 9.7 80 242-321 114-202 (480)
128 PF08777 RRM_3: RNA binding mo 97.5 0.00015 3.4E-09 62.0 5.8 70 243-318 2-76 (105)
129 KOG4211 Splicing factor hnRNP- 97.5 0.00044 9.6E-09 72.3 9.0 78 241-320 102-180 (510)
130 KOG0106 Alternative splicing f 97.5 7E-05 1.5E-09 71.6 2.8 67 242-316 99-165 (216)
131 KOG3152 TBP-binding protein, a 97.4 7.4E-05 1.6E-09 71.7 2.5 73 241-313 73-157 (278)
132 PF08952 DUF1866: Domain of un 97.4 0.00083 1.8E-08 60.0 8.3 76 237-321 22-106 (146)
133 KOG2314 Translation initiation 97.3 0.00041 8.9E-09 73.4 6.8 77 242-319 58-141 (698)
134 KOG1190 Polypyrimidine tract-b 97.1 0.0009 2E-08 68.3 6.8 79 239-321 411-490 (492)
135 KOG1548 Transcription elongati 97.0 0.0045 9.7E-08 62.2 10.4 79 239-321 262-351 (382)
136 KOG2202 U2 snRNP splicing fact 97.0 0.00031 6.7E-09 67.8 1.3 64 257-321 83-147 (260)
137 KOG0129 Predicted RNA-binding 96.9 0.0018 3.8E-08 68.4 6.6 62 241-302 369-431 (520)
138 KOG1456 Heterogeneous nuclear 96.9 0.0054 1.2E-07 62.1 9.6 79 239-322 284-363 (494)
139 KOG1456 Heterogeneous nuclear 96.9 0.0051 1.1E-07 62.2 9.3 80 239-323 117-200 (494)
140 KOG0120 Splicing factor U2AF, 96.9 0.0026 5.5E-08 68.3 7.7 64 257-320 424-490 (500)
141 KOG1855 Predicted RNA-binding 96.7 0.0018 3.9E-08 66.7 4.9 67 240-306 229-308 (484)
142 KOG2193 IGF-II mRNA-binding pr 96.7 0.0012 2.6E-08 67.6 3.4 75 243-323 2-77 (584)
143 KOG4307 RNA binding protein RB 96.7 0.0051 1.1E-07 66.8 8.0 75 243-318 868-943 (944)
144 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0043 9.2E-08 46.0 5.2 52 243-301 2-53 (53)
145 KOG0105 Alternative splicing f 96.5 0.0071 1.5E-07 55.5 6.8 71 241-318 114-186 (241)
146 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.016 3.5E-07 48.9 8.3 78 242-321 6-91 (100)
147 KOG1365 RNA-binding protein Fu 96.4 0.0069 1.5E-07 61.5 6.3 78 242-320 280-360 (508)
148 PRK00969 hypothetical protein; 96.3 0.024 5.2E-07 60.4 10.3 116 2-142 52-168 (508)
149 KOG0129 Predicted RNA-binding 96.3 0.012 2.5E-07 62.4 7.5 61 242-303 259-325 (520)
150 TIGR03268 methan_mark_3 putati 96.2 0.035 7.7E-07 59.0 10.7 116 2-142 48-165 (503)
151 KOG0112 Large RNA-binding prot 96.1 0.0052 1.1E-07 68.8 4.4 79 240-324 453-533 (975)
152 PRK00969 hypothetical protein; 96.1 0.016 3.5E-07 61.7 7.8 96 12-140 206-305 (508)
153 TIGR03268 methan_mark_3 putati 96.1 0.033 7.1E-07 59.2 10.0 115 9-142 374-496 (503)
154 KOG0128 RNA-binding protein SA 96.0 0.0048 1E-07 68.8 3.2 80 242-322 736-815 (881)
155 COG4070 Predicted peptidyl-pro 96.0 0.013 2.9E-07 59.8 5.9 97 11-140 204-304 (512)
156 KOG1996 mRNA splicing factor [ 95.7 0.031 6.8E-07 55.0 7.0 64 257-320 301-365 (378)
157 PF12903 DUF3830: Protein of u 95.2 0.099 2.1E-06 47.0 8.0 42 4-48 2-43 (147)
158 KOG2253 U1 snRNP complex, subu 95.1 0.011 2.5E-07 64.2 2.3 75 237-320 35-109 (668)
159 KOG0115 RNA-binding protein p5 94.9 0.029 6.2E-07 54.4 4.1 76 243-319 32-111 (275)
160 KOG2068 MOT2 transcription fac 94.8 0.015 3.3E-07 58.6 2.0 80 242-321 77-162 (327)
161 PF08675 RNA_bind: RNA binding 94.7 0.14 3.1E-06 41.1 6.9 54 243-305 10-63 (87)
162 KOG0128 RNA-binding protein SA 94.7 0.0025 5.5E-08 70.9 -4.2 67 243-309 668-734 (881)
163 COG4070 Predicted peptidyl-pro 94.6 0.11 2.4E-06 53.3 7.4 24 11-34 377-400 (512)
164 KOG0112 Large RNA-binding prot 94.5 0.012 2.7E-07 65.9 0.7 83 237-320 367-449 (975)
165 PF10309 DUF2414: Protein of u 94.1 0.26 5.6E-06 37.6 6.8 55 242-304 5-62 (62)
166 PF15023 DUF4523: Protein of u 93.6 0.26 5.6E-06 43.7 6.9 74 239-320 83-160 (166)
167 KOG1365 RNA-binding protein Fu 93.4 0.32 7E-06 49.8 8.1 73 242-316 161-237 (508)
168 PF03467 Smg4_UPF3: Smg-4/UPF3 93.3 0.25 5.3E-06 46.5 6.9 81 241-321 6-97 (176)
169 KOG4660 Protein Mei2, essentia 93.1 0.15 3.2E-06 54.8 5.6 86 241-326 387-477 (549)
170 PF03880 DbpA: DbpA RNA bindin 93.0 0.31 6.7E-06 38.8 6.1 66 244-319 2-74 (74)
171 KOG4307 RNA binding protein RB 93.0 0.068 1.5E-06 58.5 2.9 79 241-320 433-512 (944)
172 PF04847 Calcipressin: Calcipr 92.6 0.35 7.6E-06 45.7 6.7 63 255-323 8-72 (184)
173 KOG2591 c-Mpl binding protein, 92.5 0.23 5E-06 53.2 5.9 71 241-318 174-248 (684)
174 KOG2888 Putative RNA binding p 92.2 0.093 2E-06 52.5 2.5 14 253-266 168-181 (453)
175 PF07576 BRAP2: BRCA1-associat 92.1 1.5 3.2E-05 37.8 9.4 76 242-319 13-92 (110)
176 PF04126 Cyclophil_like: Cyclo 91.8 0.85 1.8E-05 40.0 7.8 101 1-141 1-113 (120)
177 KOG4574 RNA-binding protein (c 90.7 0.15 3.2E-06 57.2 2.4 78 240-323 296-375 (1007)
178 KOG4285 Mitotic phosphoprotein 90.7 0.72 1.6E-05 46.0 6.8 70 243-320 198-268 (350)
179 KOG4210 Nuclear localization s 89.9 0.2 4.4E-06 50.9 2.4 81 241-321 87-167 (285)
180 KOG2135 Proteins containing th 89.5 0.22 4.8E-06 52.4 2.4 71 244-321 374-445 (526)
181 KOG0804 Cytoplasmic Zn-finger 87.4 1.8 3.9E-05 45.6 7.2 69 241-311 73-142 (493)
182 KOG4368 Predicted RNA binding 86.7 0.82 1.8E-05 49.4 4.5 10 35-44 220-229 (757)
183 KOG2318 Uncharacterized conser 82.8 5.2 0.00011 43.6 8.3 80 239-318 171-304 (650)
184 KOG0151 Predicted splicing reg 80.3 1.4 3.1E-05 48.8 3.2 16 19-34 181-196 (877)
185 KOG4483 Uncharacterized conser 76.5 11 0.00023 39.3 7.8 55 241-302 390-445 (528)
186 PF11767 SET_assoc: Histone ly 76.3 16 0.00035 28.3 7.1 55 253-316 11-65 (66)
187 KOG2891 Surface glycoprotein [ 74.8 4.7 0.0001 39.7 4.7 35 242-276 149-195 (445)
188 KOG4454 RNA binding protein (R 71.8 0.8 1.7E-05 43.6 -1.3 67 242-309 80-150 (267)
189 KOG0113 U1 small nuclear ribon 71.4 9.8 0.00021 38.2 6.0 7 290-296 110-116 (335)
190 PF00098 zf-CCHC: Zinc knuckle 64.1 5.9 0.00013 22.2 1.7 17 341-357 2-18 (18)
191 KOG0796 Spliceosome subunit [R 63.8 3.7 8.1E-05 41.6 1.5 6 92-97 37-42 (319)
192 KOG4019 Calcineurin-mediated s 62.8 5.7 0.00012 36.9 2.4 74 242-321 10-89 (193)
193 COG5638 Uncharacterized conser 60.5 24 0.00053 36.8 6.6 80 239-318 143-294 (622)
194 KOG4410 5-formyltetrahydrofola 57.2 32 0.0007 34.3 6.5 48 242-295 330-378 (396)
195 KOG2193 IGF-II mRNA-binding pr 55.8 0.6 1.3E-05 48.5 -5.7 74 242-319 80-154 (584)
196 PF07530 PRE_C2HC: Associated 51.4 29 0.00064 27.0 4.3 62 257-321 2-64 (68)
197 smart00596 PRE_C2HC PRE_C2HC d 49.2 26 0.00057 27.3 3.6 61 257-320 2-63 (69)
198 PF10567 Nab6_mRNP_bdg: RNA-re 48.3 38 0.00083 34.1 5.6 87 234-320 7-106 (309)
199 COG2164 Uncharacterized conser 47.6 33 0.00073 28.7 4.2 29 1-30 4-32 (126)
200 PRK11634 ATP-dependent RNA hel 43.0 2.6E+02 0.0056 32.0 12.1 67 245-321 489-562 (629)
201 COG5222 Uncharacterized conser 42.7 29 0.00063 34.8 3.7 32 336-367 173-204 (427)
202 COG0724 RNA-binding proteins ( 41.5 30 0.00064 33.7 3.9 64 239-302 222-285 (306)
203 KOG0835 Cyclin L [General func 40.8 38 0.00083 34.6 4.3 6 287-292 176-181 (367)
204 KOG4213 RNA-binding protein La 35.4 1.3E+02 0.0029 28.1 6.5 56 243-303 112-169 (205)
205 KOG3702 Nuclear polyadenylated 32.6 35 0.00075 38.1 2.8 74 242-316 511-584 (681)
206 PF06138 Chordopox_E11: Chordo 31.2 1.3E+02 0.0029 26.3 5.5 47 2-48 5-61 (130)
207 PF03468 XS: XS domain; Inter 31.0 75 0.0016 27.6 4.1 55 244-301 10-74 (116)
208 KOG1295 Nonsense-mediated deca 30.3 62 0.0013 33.9 4.0 69 242-310 7-78 (376)
209 KOG2295 C2H2 Zn-finger protein 30.2 8.1 0.00017 41.9 -2.4 71 241-311 230-300 (648)
210 KOG4365 Uncharacterized conser 28.3 11 0.00025 39.6 -1.6 78 243-321 4-81 (572)
211 PF13917 zf-CCHC_3: Zinc knuck 24.0 54 0.0012 23.0 1.6 19 340-358 5-23 (42)
212 KOG4008 rRNA processing protei 23.8 82 0.0018 30.8 3.3 32 241-272 39-70 (261)
213 PF09707 Cas_Cas2CT1978: CRISP 22.9 1.4E+02 0.003 24.5 4.0 49 241-292 24-72 (86)
214 KOG2548 SWAP mRNA splicing reg 22.0 39 0.00085 36.6 0.9 8 293-300 236-243 (653)
215 PF03439 Spt5-NGN: Early trans 20.3 2.1E+02 0.0046 23.0 4.7 26 283-308 43-68 (84)
No 1
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-78 Score=581.61 Aligned_cols=359 Identities=67% Similarity=1.072 Sum_probs=330.2
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
|+|+|+|++|+|||.||.+.+|.||.|||+||+.+||+.|.||-|..+|++|+|||+++|.||.+||+.+++.++.+|..
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffea 80 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEA 80 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccc
Q 007792 81 EIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTY 160 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 160 (589)
|+++.|+|...|+|||+++|.+.+||||||||+.++.+||++|+|||+|++||++|.+|+.+-+++.++|+++|.|+++.
T Consensus 81 E~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTi 160 (479)
T KOG0415|consen 81 EFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTI 160 (479)
T ss_pred hhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChhhhcccccCCCCCCCCCccccccccccCCCCcccccCCHHHHHHHHHhhhhhhhhhhhhccCCCCCCCCCC
Q 007792 161 ILEDPFDDPAQLAELIPDASPEGKPKDEVVDEVRLEDDWVPLDEQLSAAELEQVIRSKDARSSAVVLESIGDIPDADIKP 240 (589)
Q Consensus 161 vl~~p~~~~~~l~~~~~~~s~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (589)
||++||++|+.|. +|..+|.+.+++.....+.++++|. .+++++++++++.+.++++++++++|+|.|++|.+..+|
T Consensus 161 iLdDPFddpp~l~--~p~rspsPt~e~l~~g~i~~de~~d-~~~g~saeel~e~~~e~ea~~~A~iLEmvGDlpdAd~~P 237 (479)
T KOG0415|consen 161 ILDDPFDDPPDLA--EPMRSPSPTPEQLVKGRIRLDEDED-DDEGLSAEELEEVLAEKEAKAQAVILEMVGDLPDADVKP 237 (479)
T ss_pred EecCCCCCchhhc--cCCCCCCCCHHHhhccccccCcccc-cccccCHHHHHHHHHHHHHHhhHhHHHHhcCCcccccCC
Confidence 9999999999998 6777787777777666788888888 888999999999999999999999999999999999999
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
|.+.|||..|++.||.++|.-+|+.||+|..|.|+.|..||.+..||||+|++.++|++|+..|++..|+.+.|+|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCCccCCCCCCCCccCCCCCCcccccccCCCCCCC
Q 007792 321 SVSKLWNQFRRRDHQTGKGKGCFKCGGLDHIAKDCTGQQPAKYILRDDNRQHGG 374 (589)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (589)
+..+ ..|++...+. ...+.+.+|......++.++..+.++++
T Consensus 318 SVsk--~k~r~k~~~~----------~~d~~~~d~~~~~~~k~~~kd~~~~~~~ 359 (479)
T KOG0415|consen 318 SVSK--VKYRQKGSQK----------ETDHRAKDCVGGPSSKFIHKDQNRPRGR 359 (479)
T ss_pred hhhh--hhcccccccc----------ccchhhhccccCCcccchhccCCCCCCC
Confidence 8665 2333222211 2345566666666666666665554444
No 2
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-46 Score=311.16 Aligned_cols=153 Identities=45% Similarity=0.789 Sum_probs=148.0
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCc
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDE 81 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e 81 (589)
-|+|+|++|.|+||||-..||.||.||.+|++.+||+|+.||||++.||||||||+++|.+|.+||+ ..|.+|
T Consensus 11 ~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG-------~kF~DE 83 (164)
T KOG0881|consen 11 NVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYG-------DKFEDE 83 (164)
T ss_pred eEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCcccccc-------chhhhh
Confidence 4899999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred cccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeeccccc
Q 007792 82 IRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYI 161 (589)
Q Consensus 82 ~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 161 (589)
++..|+|..+|+|||||+||++|||||||||+| .+|||++|||||+|+.||+|+..|..+.++...+|..+++|..+..
T Consensus 84 i~~dLkhTGAGILsMANaGPnTNgSQFFiTLAP-t~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 84 IHSDLKHTGAGILSMANAGPNTNGSQFFITLAP-TQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred hhhhhcccchhhhhhhccCCCCCCceEEEEecC-ccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence 999999999999999999999999999999999 6999999999999999999999999999999999999999988765
Q ss_pred c
Q 007792 162 L 162 (589)
Q Consensus 162 l 162 (589)
.
T Consensus 163 ~ 163 (164)
T KOG0881|consen 163 S 163 (164)
T ss_pred C
Confidence 3
No 3
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-45 Score=361.22 Aligned_cols=157 Identities=38% Similarity=0.599 Sum_probs=147.1
Q ss_pred EEEEE-ecceeEEEEecCCCChhHHHHHHHHHhcC-----------ccCCceEEEeecCcccccCCCC-CCCCCCCCccc
Q 007792 2 SVLIV-TSLGDIVVDLFVDKCPLTTKNFLKLCKIK-----------YYNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYK 68 (589)
Q Consensus 2 ~v~~~-T~~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~ 68 (589)
+|.|. -++|+||||||.++||+||+||+.||++. .|.|+.||||+++|||||||++ ++|+||.+||+
T Consensus 14 DISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG 93 (372)
T KOG0546|consen 14 DISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYG 93 (372)
T ss_pred EEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccc
Confidence 44555 58999999999999999999999999763 4999999999999999999998 89999999998
Q ss_pred ccccccccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCC
Q 007792 69 FLYGEQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKN 148 (589)
Q Consensus 69 ~~~~~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~ 148 (589)
..|.|| ++.|+|+++++|||||.|||+||||||||+.+ +|||||+|+|||+||.|++||..|+++.++...
T Consensus 94 -------~~FdDE-nF~lKHdrpflLSMAN~GpNTNgSQFFITT~p-~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~s 164 (372)
T KOG0546|consen 94 -------EKFDDE-NFELKHDRPFLLSMANRGPNTNGSQFFITTVP-TPHLDGKHVVFGQVIKGKEVVREIENLETDEES 164 (372)
T ss_pred -------cccccc-cceeccCcchhhhhhcCCCCCCCcceEEeCCC-CCCcCCceeEEeeEeechhHHHHHhccccccCC
Confidence 789999 69999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CcccceeecccccccCCCC
Q 007792 149 RPYKNIRIKHTYILEDPFD 167 (589)
Q Consensus 149 ~p~~~i~I~~~~vl~~p~~ 167 (589)
+|+.+|.|.+|++|..-..
T Consensus 165 kP~~dV~I~dCGel~~~~~ 183 (372)
T KOG0546|consen 165 KPLADVVISDCGELVKKSK 183 (372)
T ss_pred CCccceEeccccccccccc
Confidence 9999999999999876533
No 4
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=4.3e-44 Score=333.57 Aligned_cols=166 Identities=66% Similarity=1.137 Sum_probs=155.0
Q ss_pred EEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCccc
Q 007792 4 LIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEIR 83 (589)
Q Consensus 4 ~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 83 (589)
+|+|++|+|+||||.+.||+||+||++||+.+||+++.||||+++|+||||++.+++.++.++|+.........+++|+.
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 48999999999999999999999999999999999999999999999999999988888888887555555567888887
Q ss_pred cCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeeccccccc
Q 007792 84 VDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYILE 163 (589)
Q Consensus 84 ~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~vl~ 163 (589)
+.++|+.+|+||||+.++++++|||||||.+++|+||++|+|||+|++||+||++|+.++++.+++|..+|+|..|+|+.
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 88999999999999999999999999999865799999999999999999999999999999999999999999999999
Q ss_pred CCCCCh
Q 007792 164 DPFDDP 169 (589)
Q Consensus 164 ~p~~~~ 169 (589)
+||+++
T Consensus 161 ~pf~~~ 166 (166)
T cd01921 161 DPFPDP 166 (166)
T ss_pred CCCCCC
Confidence 999875
No 5
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3.3e-43 Score=324.99 Aligned_cols=157 Identities=43% Similarity=0.784 Sum_probs=150.2
Q ss_pred EEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCcc
Q 007792 3 VLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 3 v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
|+|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+|+|+||||++.+++.++.++|+ ..+++|+
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g-------~~~~~E~ 74 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWG-------KPFKDEF 74 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccC-------CccCccc
Confidence 799999999999999999999999999999999999999999999999999999988888888886 5688888
Q ss_pred ccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccccc
Q 007792 83 RVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYIL 162 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~vl 162 (589)
...++|+.+|+||||+.++++++|||||||.+ +|+||++|+|||+|++||+||++|+.++++.+++|+.+|.|.+|.|+
T Consensus 75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~-~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~ 153 (159)
T cd01923 75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRS-CKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF 153 (159)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE
Confidence 77889999999999999999999999999998 79999999999999999999999999999989999999999999999
Q ss_pred cCCCC
Q 007792 163 EDPFD 167 (589)
Q Consensus 163 ~~p~~ 167 (589)
.+||+
T Consensus 154 ~dpf~ 158 (159)
T cd01923 154 VDPFE 158 (159)
T ss_pred eCCCC
Confidence 99996
No 6
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=4.6e-43 Score=321.65 Aligned_cols=153 Identities=51% Similarity=0.868 Sum_probs=144.9
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
|+|+|+|++|+|+||||++.||+||+||++||+.+||+|+.||||+++|+||||++.+++.++.++|+ ..|++
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~-------~~~~~ 73 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWG-------KKFED 73 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCC-------Ccccc
Confidence 99999999999999999999999999999999999999999999999999999999988888888776 56888
Q ss_pred ccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccc
Q 007792 81 EIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTY 160 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 160 (589)
|+...++|+.+|+||||+.++++++|||||++.+ +|+||++|+|||+|++||+||++|+.+++++.++|..+|+|.+|.
T Consensus 74 e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~-~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 74 EFRETLKHDSRGVVSMANNGPNTNGSQFFITYAK-QPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred ccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCC-CcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 8777889989999999999999999999999998 699999999999999999999999999999999999999999885
Q ss_pred c
Q 007792 161 I 161 (589)
Q Consensus 161 v 161 (589)
+
T Consensus 153 ~ 153 (153)
T cd01928 153 I 153 (153)
T ss_pred C
Confidence 3
No 7
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-43 Score=293.47 Aligned_cols=159 Identities=47% Similarity=0.793 Sum_probs=154.3
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
|+|+|+|..|+|.||||-+.+|+||+||+.||...||++|.||+-+++|++|+|+++.+|.||.+||+ +.|++
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg-------~~fed 73 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWG-------KKFED 73 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccC-------CcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred ccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCC-CCcccceeeccc
Q 007792 81 EIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEK-NRPYKNIRIKHT 159 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~-~~p~~~i~I~~~ 159 (589)
|+..-|+|+.+|+|+||+.||++|+||||||.+.+ ||||-+|||||+||+|+++|+.|+.++++.. -+|+..+.|.++
T Consensus 74 e~~~~lkh~~rg~vsmanngp~tn~sqffity~kq-~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~i 152 (161)
T KOG0884|consen 74 EYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQ-PHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152 (161)
T ss_pred HHHHHHhhccceeEEcccCCCCCCCceEEEEecCC-CccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeee
Confidence 99999999999999999999999999999999985 9999999999999999999999999999876 799999999999
Q ss_pred ccccCCCC
Q 007792 160 YILEDPFD 167 (589)
Q Consensus 160 ~vl~~p~~ 167 (589)
.|..+||.
T Consensus 153 tihanp~a 160 (161)
T KOG0884|consen 153 TIHANPFA 160 (161)
T ss_pred EEecCcCC
Confidence 99999985
No 8
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-42 Score=312.00 Aligned_cols=149 Identities=41% Similarity=0.689 Sum_probs=130.8
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCC-CCCCCCcccccccccccccCC
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGT-GTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (589)
+|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+++|||||||+.+. +.++++ +.|++
T Consensus 1 ~v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~----------~~f~~ 70 (158)
T COG0652 1 TVILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG----------PPFKD 70 (158)
T ss_pred CceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCCC----------CCCcc
Confidence 4789999999999999999999999999999999999999999999999999999976 776666 56899
Q ss_pred ccccCCCCCC--CceEEEeccC-CCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCC----Ccccc
Q 007792 81 EIRVDLKHAK--TGTVAMASAG-ENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKN----RPYKN 153 (589)
Q Consensus 81 e~~~~l~~~~--~G~vs~a~~g-~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~----~p~~~ 153 (589)
|+... .|.. +|+||||+.+ |++|+|||||++.+ .||||++|+|||+|++||+||++|.++.+...+ .|..+
T Consensus 71 E~~~~-~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~-~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~ 148 (158)
T COG0652 71 ENFAL-NGDRHKRGTLSMARAGDPNSNGSQFFITVVD-NPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADP 148 (158)
T ss_pred ccccc-ccccCCcceEeEcccCCcCCccCeEEEEecC-CcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCC
Confidence 96433 3334 8999999999 99999999999998 699999999999999999999999998887543 45567
Q ss_pred eeecccccc
Q 007792 154 IRIKHTYIL 162 (589)
Q Consensus 154 i~I~~~~vl 162 (589)
++|..+.++
T Consensus 149 ~~i~~~~~~ 157 (158)
T COG0652 149 VKILSVKIV 157 (158)
T ss_pred eEEeeeeee
Confidence 777766553
No 9
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-42 Score=312.79 Aligned_cols=148 Identities=39% Similarity=0.664 Sum_probs=140.7
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHhc----CccCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccccccCCc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCKI----KYYNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQARFFGDE 81 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~----~~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~~e 81 (589)
-..|+|+|.||+..+|+||+||.+||.. .-|.|+.||||+|+|||||||++ ++++++.+||+ ..|++|
T Consensus 51 ~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG-------~~F~DE 123 (217)
T KOG0880|consen 51 EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYG-------EKFPDE 123 (217)
T ss_pred EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeec-------CCCCCc
Confidence 5789999999999999999999999983 24999999999999999999999 67999999998 789999
Q ss_pred cccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeeccccc
Q 007792 82 IRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYI 161 (589)
Q Consensus 82 ~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 161 (589)
++.|+|+.+|.|||||.||++||||||||+.. ++||||+|+|||+|++||++|.+|+.+.|+.+++|++.++|.+|+-
T Consensus 124 -Nf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~-t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~ 201 (217)
T KOG0880|consen 124 -NFKLKHDRPGRLSMANAGPDTNGSQFFITTVK-TPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGE 201 (217)
T ss_pred -cceeecCCCceEeeeccCCCCCCceEEEEecC-CccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCc
Confidence 59999999999999999999999999999998 7999999999999999999999999999999999999999999997
Q ss_pred cc
Q 007792 162 LE 163 (589)
Q Consensus 162 l~ 163 (589)
+.
T Consensus 202 l~ 203 (217)
T KOG0880|consen 202 LP 203 (217)
T ss_pred cc
Confidence 64
No 10
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-42 Score=340.92 Aligned_cols=162 Identities=42% Similarity=0.765 Sum_probs=156.6
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCc
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDE 81 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e 81 (589)
.|.|+|+.|.|.|||+.+.+|.+|+||++||+.|||+|+.|||.+.+||||||||+++|.||.+||+ ++|.||
T Consensus 279 yvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWg-------KpFkDE 351 (518)
T KOG0883|consen 279 YVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWG-------KPFKDE 351 (518)
T ss_pred eEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccC-------Cccccc
Confidence 4889999999999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred cccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeeccccc
Q 007792 82 IRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYI 161 (589)
Q Consensus 82 ~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 161 (589)
+.+.|.|+.+|+|||||+|+|+|||||||++.+ |.|||.+|||||+||.|++||.+|+++++++..+|..+|+|..+.|
T Consensus 352 f~~~l~H~gRGvlSMANsGpnTNgSQFFItyrs-ckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~V 430 (518)
T KOG0883|consen 352 FCSNLSHDGRGVLSMANSGPNTNGSQFFITYRS-CKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIV 430 (518)
T ss_pred cCCCCCcCCcceEeeccCCCCCCCceEEEEecc-hhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEE
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhh
Q 007792 162 LEDPFDDPAQ 171 (589)
Q Consensus 162 l~~p~~~~~~ 171 (589)
+.+||.....
T Consensus 431 FVdPfeEa~~ 440 (518)
T KOG0883|consen 431 FVDPFEEADK 440 (518)
T ss_pred eeCcHHHHHH
Confidence 9999865443
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.6e-41 Score=310.03 Aligned_cols=148 Identities=44% Similarity=0.772 Sum_probs=139.9
Q ss_pred EEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCccc
Q 007792 4 LIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEIR 83 (589)
Q Consensus 4 ~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 83 (589)
+|+|++|+|+||||.+.||+||+||++||+.+||+++.||||+|+|+||||++.+++.++.++|+ ..|++|+.
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~-------~~~~~e~~ 73 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWG-------KEFEDEFS 73 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccC-------Cccccccc
Confidence 58999999999999999999999999999999999999999999999999999988888888886 56888987
Q ss_pred cCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeeccc
Q 007792 84 VDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHT 159 (589)
Q Consensus 84 ~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~ 159 (589)
+.++|..+|+||||+.++++++|||||+|.+ +|+||++|+|||+|++||+||++|+.++++.+++|..+|+|.++
T Consensus 74 ~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~-~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 74 PSLKHDRPYTLSMANAGPNTNGSQFFITTVA-TPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred cccCcCCCeEEEEeeCCCCCCCceEEEEcCC-CcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 7899999999999999999999999999998 69999999999999999999999999999989999999999764
No 12
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-42 Score=343.04 Aligned_cols=152 Identities=40% Similarity=0.747 Sum_probs=148.4
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCc
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDE 81 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e 81 (589)
.++|+|++|+|.|.||+++||+||+||...|..|||+|..||||+++||||+|||.++|+||.+||+ ..|+||
T Consensus 406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg-------~dfede 478 (558)
T KOG0882|consen 406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWG-------KDFEDE 478 (558)
T ss_pred ceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCccccc-------ccchhh
Confidence 4789999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred cccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeeccccc
Q 007792 82 IRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYI 161 (589)
Q Consensus 82 ~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 161 (589)
+++.|+|+++.+|||||+|+|+||||||||+-+ +||||++|||||+|+.||+||+.|+++.++++++|+++|.|.++.+
T Consensus 479 fh~~lrhdrpft~smanag~ntngsqffit~~~-tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 479 FHPNLRHDRPFTVSMANAGPNTNGSQFFITTVP-TPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred cCcccccCCCceEEecccCCCCCCceEEEEecC-ccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 999999999999999999999999999999999 7999999999999999999999999999999999999999999865
No 13
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1e-40 Score=311.94 Aligned_cols=161 Identities=41% Similarity=0.734 Sum_probs=151.0
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCc
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDE 81 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e 81 (589)
+|+|+|++|+|+|+||++.||+||+||++||+.+||+++.||||+++|+||||++.+++.++.++|+ ..|++|
T Consensus 7 ~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g-------~~~~~E 79 (171)
T cd01925 7 KVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYG-------EPFKDE 79 (171)
T ss_pred EEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCC-------CccCcc
Confidence 6899999999999999999999999999999999999999999999999999999988888888886 568888
Q ss_pred cccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEec-CHHHHHHHhhCccCCCCCcccceeecccc
Q 007792 82 IRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAE-GLETLSRINESFVDEKNRPYKNIRIKHTY 160 (589)
Q Consensus 82 ~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~-G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 160 (589)
....++|+.+|+||||+.++++++|||||+|.+ +|+||++|+|||+|+. +|++|++|+.++++.+++|..+|.|.+|.
T Consensus 80 ~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~-~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~ 158 (171)
T cd01925 80 FHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDK-ADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVE 158 (171)
T ss_pred cccCcCCCCCcEEEECcCCCCCcccEEEEEcCC-CcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEE
Confidence 877888989999999999999999999999998 7999999999999994 68999999999999999999999999999
Q ss_pred cccCCCCChh
Q 007792 161 ILEDPFDDPA 170 (589)
Q Consensus 161 vl~~p~~~~~ 170 (589)
++.+||++..
T Consensus 159 i~~~pf~~~~ 168 (171)
T cd01925 159 VLENPFDDIV 168 (171)
T ss_pred EEcCCchhhc
Confidence 9999987643
No 14
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.1e-40 Score=303.58 Aligned_cols=145 Identities=45% Similarity=0.808 Sum_probs=136.8
Q ss_pred EEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCccc
Q 007792 4 LIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEIR 83 (589)
Q Consensus 4 ~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 83 (589)
+|+|++|+|+||||.+.||+||+||++||+.+||+++.||||+|+|+||||++.+++.++.++|+ ..|++|+.
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~-------~~~~~e~~ 73 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYG-------KKFEDEIH 73 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccC-------CCcccccc
Confidence 47899999999999999999999999999999999999999999999999999988888888776 56888877
Q ss_pred cCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeec
Q 007792 84 VDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIK 157 (589)
Q Consensus 84 ~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~ 157 (589)
+.++|..+|+||||+.++++++|||||++.+ +|+||++|+|||+|++||+||++|++++++ +++|..+|+|.
T Consensus 74 ~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~-~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 74 PELKHTGAGILSMANAGPNTNGSQFFITLAP-TPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred cCcCCCCCeEEEEeeCCCCCCccEEEEEcCC-CcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 8899999999999999999999999999998 699999999999999999999999999998 88999999985
No 15
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-40 Score=281.42 Aligned_cols=151 Identities=38% Similarity=0.635 Sum_probs=142.4
Q ss_pred EEEEE-ecceeEEEEecCCCChhHHHHHHHHHhcCc--------cCCceEEEeecCcccccCCCC-CCCCCCCCcccccc
Q 007792 2 SVLIV-TSLGDIVVDLFVDKCPLTTKNFLKLCKIKY--------YNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLY 71 (589)
Q Consensus 2 ~v~~~-T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~ 71 (589)
.|.+. +++|+|.||||.+.+|+|++||.++|++.| |.+++||||+++|||||||+. ++|++-.+||+
T Consensus 16 dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~--- 92 (177)
T KOG0879|consen 16 DVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYG--- 92 (177)
T ss_pred EEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcC---
Confidence 45555 689999999999999999999999999876 999999999999999999987 78899999998
Q ss_pred cccccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcc
Q 007792 72 GEQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPY 151 (589)
Q Consensus 72 ~~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~ 151 (589)
.+|++| ++.|+|+.+|+||||++|+++||+|||||... +.|||++|+|||+|++||.++.+|+++++.++++|.
T Consensus 93 ----~~F~DE-NFtlkH~~PGlLSMANsG~~tNGCQFFITcak-cdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK 166 (177)
T KOG0879|consen 93 ----STFPDE-NFTLKHDGPGLLSMANSGKDTNGCQFFITCAK-CDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK 166 (177)
T ss_pred ----CCCCCc-ceeeecCCCceeeccccCCCCCCceEEEEecc-cccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence 679999 69999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred cceeeccccc
Q 007792 152 KNIRIKHTYI 161 (589)
Q Consensus 152 ~~i~I~~~~v 161 (589)
.+|+|..|+.
T Consensus 167 l~v~i~qCGe 176 (177)
T KOG0879|consen 167 LPVVIVQCGE 176 (177)
T ss_pred CcEEEeeccc
Confidence 9999999974
No 16
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-40 Score=320.44 Aligned_cols=162 Identities=43% Similarity=0.750 Sum_probs=157.1
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCc
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDE 81 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e 81 (589)
.|+|.|+.|+|.||||+..||++|.||++||-.|||+|+.||+++|+|++|||+|+++|+||.+||+ .+|.+|
T Consensus 14 kvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg-------~~fadE 86 (439)
T KOG0885|consen 14 KVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYG-------RPFADE 86 (439)
T ss_pred eEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCcccccc-------ccchhh
Confidence 5899999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred cccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEec-CHHHHHHHhhCccCCCCCcccceeecccc
Q 007792 82 IRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAE-GLETLSRINESFVDEKNRPYKNIRIKHTY 160 (589)
Q Consensus 82 ~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~-G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 160 (589)
+++.|.++++|+|+||+.+.+.|||||||||++ +|+|+++|||||+|+. -+..+-+|..+.++.+.+|+.+.+|..|.
T Consensus 87 ~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~-~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~E 165 (439)
T KOG0885|consen 87 FHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGD-TPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVE 165 (439)
T ss_pred cCcceeeeccceeeecccCCCCCCceEEEEecC-ChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeE
Confidence 999999999999999999999999999999999 8999999999999996 78999999999999999999999999999
Q ss_pred cccCCCCChhh
Q 007792 161 ILEDPFDDPAQ 171 (589)
Q Consensus 161 vl~~p~~~~~~ 171 (589)
|+.+||+++..
T Consensus 166 V~~npFdDI~p 176 (439)
T KOG0885|consen 166 VLINPFDDIKP 176 (439)
T ss_pred eecCchhhcch
Confidence 99999999765
No 17
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=8.7e-38 Score=303.16 Aligned_cols=158 Identities=25% Similarity=0.295 Sum_probs=138.9
Q ss_pred EEEEEec-----ceeEEEEecCCCChhHHHHHHHHHhcC-----------ccCCceEEEeecC-cccccCCCCCCCCCCC
Q 007792 2 SVLIVTS-----LGDIVVDLFVDKCPLTTKNFLKLCKIK-----------YYNGCLFHTVQKD-FTAQTGDPTGTGTGGD 64 (589)
Q Consensus 2 ~v~~~T~-----~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~Y~g~~f~rv~~~-~~iq~Gd~~~~~~~~~ 64 (589)
.|.|+|+ .|+|+|+||.+.||+||+||+.||++. +|+++.||+|+++ |+||+|++... +.
T Consensus 54 rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~---g~ 130 (249)
T PTZ00221 54 RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF---NV 130 (249)
T ss_pred EEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC---Cc
Confidence 3666665 567999999999999999999999753 3999999999986 89999998643 34
Q ss_pred CcccccccccccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCcc
Q 007792 65 SVYKFLYGEQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFV 144 (589)
Q Consensus 65 ~~~~~~~~~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~ 144 (589)
++|+ ..|++|. +.++|+.+|+||||+.|+++|+|||||||.+ +|+||++|+|||+|++||+||++|+.+++
T Consensus 131 s~~G-------~~f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~-~p~LDgk~vVFGrVveGmdVv~kIe~v~~ 201 (249)
T PTZ00221 131 SSTG-------TPIADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGP-SPSLDFKQVVFGKAVDDLSLLEKLESLPL 201 (249)
T ss_pred cCCC-------CcccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCC-CCccCCCceEEEEEEeCHHHHHHHHcCCc
Confidence 4554 4688884 6789999999999999999999999999998 69999999999999999999999999999
Q ss_pred CCCCCcccceeecccccccCCCCChhh
Q 007792 145 DEKNRPYKNIRIKHTYILEDPFDDPAQ 171 (589)
Q Consensus 145 ~~~~~p~~~i~I~~~~vl~~p~~~~~~ 171 (589)
+..++|..+|+|.+|+++.+|-+...+
T Consensus 202 d~~grP~~~V~I~~Cgvl~~~~p~~~~ 228 (249)
T PTZ00221 202 DDVGRPLLPVTVSFCGALTGEKPPGRQ 228 (249)
T ss_pred CCCCCCCCCeEEEECeEecCCCCCccc
Confidence 889999999999999999888765554
No 18
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=7.5e-38 Score=295.44 Aligned_cols=147 Identities=39% Similarity=0.642 Sum_probs=134.2
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHhcCc--------cCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccccc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCKIKY--------YNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQARF 77 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~ 77 (589)
+++|+|+|+||.+.||+||+||++||++.+ |++|.||||+++|+||||++. +++.++.++|+ ..
T Consensus 30 ~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g-------~~ 102 (186)
T PLN03149 30 IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYG-------SK 102 (186)
T ss_pred cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccC-------Cc
Confidence 367999999999999999999999998655 999999999999999999975 67788888776 45
Q ss_pred cCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEe-cCHHHHHHHhhCccCCCCCcccceee
Q 007792 78 FGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVA-EGLETLSRINESFVDEKNRPYKNIRI 156 (589)
Q Consensus 78 ~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv-~G~~vl~~i~~~~~~~~~~p~~~i~I 156 (589)
|++|. +.++|..+|+||||+.++++++||||||+.+ +|+||++|+|||+|+ +||+||++|+.++++.+++|..+|+|
T Consensus 103 f~~e~-~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~-~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I 180 (186)
T PLN03149 103 FEDEN-FIAKHTGPGLLSMANSGPNTNGCQFFITCAK-CDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVI 180 (186)
T ss_pred cCCcc-cccccCCCCEEEEeeCCCCCcccEEEEECCC-CCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEE
Confidence 67774 5678889999999999999999999999998 799999999999999 79999999999999999999999999
Q ss_pred cccccc
Q 007792 157 KHTYIL 162 (589)
Q Consensus 157 ~~~~vl 162 (589)
.+|+++
T Consensus 181 ~~cG~~ 186 (186)
T PLN03149 181 SECGEM 186 (186)
T ss_pred EeCEeC
Confidence 999974
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.1e-37 Score=288.57 Aligned_cols=149 Identities=31% Similarity=0.504 Sum_probs=127.9
Q ss_pred EEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCcc
Q 007792 3 VLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 3 v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
|+|+|++|+|+|+||.+.||+||+||++||+.+||+++.||||+++|+||||++... .+. ..++ ..|++|.
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~~~-~~~~-------~~~~~e~ 72 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MKQ-KATK-------EPIKNEA 72 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-CCc-CCCC-------CCcCCcc
Confidence 689999999999999999999999999999999999999999999999999986521 111 1111 3577786
Q ss_pred ccCCCCCCCceEEEeccC-CCCCcceEEEEeCCCCCCCC-------C-CcceEEEEecCHHHHHHHhhCccCCC----CC
Q 007792 83 RVDLKHAKTGTVAMASAG-ENLNASQFYMTLRDNLDYLD-------E-KHTIFGEVAEGLETLSRINESFVDEK----NR 149 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~~g-~~~~~sqFfI~l~~~~~~ld-------~-~~~vFG~Vv~G~~vl~~i~~~~~~~~----~~ 149 (589)
...++| .+|+||||+.+ +++++|||||++.+ .++|| + +|+|||+|++||+||++|+.++++.. ++
T Consensus 73 ~~~~~~-~~G~lsma~~~~p~s~~SQFfI~~~~-~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~ 150 (164)
T PRK10791 73 NNGLKN-TRGTLAMARTQAPHSATAQFFINVVD-NDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDV 150 (164)
T ss_pred cccccC-CCcEEEECCCCCcCCccceEEEEecC-chhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCC
Confidence 666666 79999999875 89999999999998 47776 3 79999999999999999999999763 69
Q ss_pred cccceeecccccc
Q 007792 150 PYKNIRIKHTYIL 162 (589)
Q Consensus 150 p~~~i~I~~~~vl 162 (589)
|..+|+|.+|.|.
T Consensus 151 P~~~v~I~~~~i~ 163 (164)
T PRK10791 151 PKEDVIIESVTVS 163 (164)
T ss_pred cCCCeEEEEEEEe
Confidence 9999999999775
No 20
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.7e-37 Score=293.72 Aligned_cols=151 Identities=29% Similarity=0.472 Sum_probs=130.4
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
..|+|+|++|+|+|+||.+.||+||+||++||+.+||+|+.||||+|+|+||||++.....+ ..++ ..|++
T Consensus 29 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~--~~~~-------~~~~~ 99 (190)
T PRK10903 29 PHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPN-------PPIKN 99 (190)
T ss_pred cEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC--CCCC-------CcccC
Confidence 36899999999999999999999999999999999999999999999999999997643221 1111 34677
Q ss_pred ccccCCCCCCCceEEEeccC-CCCCcceEEEEeCCCCCCCCC-----CcceEEEEecCHHHHHHHhhCccCC----CCCc
Q 007792 81 EIRVDLKHAKTGTVAMASAG-ENLNASQFYMTLRDNLDYLDE-----KHTIFGEVAEGLETLSRINESFVDE----KNRP 150 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g-~~~~~sqFfI~l~~~~~~ld~-----~~~vFG~Vv~G~~vl~~i~~~~~~~----~~~p 150 (589)
|....+.| .+|+||||+.+ +++++|||||++.+ .++||+ +|+|||+|++||+||++|+.++++. .++|
T Consensus 100 e~~~~l~~-~~G~lama~~~~~~sn~SQFfIt~~~-~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P 177 (190)
T PRK10903 100 EADNGLRN-TRGTIAMARTADKDSATSQFFINVAD-NAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVP 177 (190)
T ss_pred cccccCcC-CCcEEEeCCCCCCCCcccEEEEECcC-cccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcc
Confidence 76555544 78999999865 89999999999998 589984 8999999999999999999999976 4699
Q ss_pred ccceeecccccc
Q 007792 151 YKNIRIKHTYIL 162 (589)
Q Consensus 151 ~~~i~I~~~~vl 162 (589)
..+|+|.+|+|+
T Consensus 178 ~~~v~I~~~~v~ 189 (190)
T PRK10903 178 SKPVVILSAKVL 189 (190)
T ss_pred cCCeEEEEEEEe
Confidence 999999999875
No 21
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=2.3e-37 Score=288.01 Aligned_cols=149 Identities=41% Similarity=0.667 Sum_probs=134.5
Q ss_pred EEEEE-ecceeEEEEecCCCChhHHHHHHHHHhc--C------ccCCceEEEeecCcccccCCCC-CCCCCCCCcccccc
Q 007792 2 SVLIV-TSLGDIVVDLFVDKCPLTTKNFLKLCKI--K------YYNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLY 71 (589)
Q Consensus 2 ~v~~~-T~~G~i~ieL~~~~aP~~~~nF~~l~~~--~------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~ 71 (589)
.|.+. |++|+|+||||.+.||+||+||++||++ + +|+++.||||+|+|+||||++. .++.++.++|+
T Consensus 6 di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g--- 82 (164)
T cd01926 6 DITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYG--- 82 (164)
T ss_pred EEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccC---
Confidence 44443 6899999999999999999999999984 4 8999999999999999999976 66777777776
Q ss_pred cccccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcc
Q 007792 72 GEQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPY 151 (589)
Q Consensus 72 ~~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~ 151 (589)
..+++| ...++|+.+|+||||+.++++++|||||+|.+ +|+||++|+|||+|++||+||++|+.++++ +++|.
T Consensus 83 ----~~~~~e-~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~-~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~ 155 (164)
T cd01926 83 ----EKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVK-TPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPK 155 (164)
T ss_pred ----CccCCC-CccccCCCccEEEeeECCCCCcccEEEEEeCC-CCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCc
Confidence 446777 36789989999999999999999999999998 799999999999999999999999999998 89999
Q ss_pred cceeecccc
Q 007792 152 KNIRIKHTY 160 (589)
Q Consensus 152 ~~i~I~~~~ 160 (589)
.+|+|.+|+
T Consensus 156 ~~i~I~~cG 164 (164)
T cd01926 156 KKVVIADCG 164 (164)
T ss_pred CCeEEEECC
Confidence 999999996
No 22
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=4.5e-37 Score=289.94 Aligned_cols=151 Identities=39% Similarity=0.641 Sum_probs=134.8
Q ss_pred EEEEE-ecceeEEEEecCCCChhHHHHHHHHHh---------cCccCCceEEEeecCcccccCCCC-CCCCCCCCccccc
Q 007792 2 SVLIV-TSLGDIVVDLFVDKCPLTTKNFLKLCK---------IKYYNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFL 70 (589)
Q Consensus 2 ~v~~~-T~~G~i~ieL~~~~aP~~~~nF~~l~~---------~~~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~ 70 (589)
.+.+. |++|+|+||||.+.||+||+||++||+ .++|++|.||||+|+|+||||++. .++.++.++|+
T Consensus 21 di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g-- 98 (183)
T PTZ00060 21 DISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYG-- 98 (183)
T ss_pred EEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccc--
Confidence 34443 678999999999999999999999997 468999999999999999999976 56777787776
Q ss_pred ccccccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCc
Q 007792 71 YGEQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRP 150 (589)
Q Consensus 71 ~~~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p 150 (589)
..+++| ...++|..+|+|+|++.++++++|||||||.+ +|+||++|+|||+|++||+||++|+.+.+ ..+.|
T Consensus 99 -----~~~~~e-~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~-~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P 170 (183)
T PTZ00060 99 -----RKFTDE-NFKLKHDQPGLLSMANAGPNTNGSQFFITTVP-CPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYP 170 (183)
T ss_pred -----cccCCc-cccccCCCCCEEEeccCCCCCCcceEEEEeCC-CcccCCCccEEEEEEccHHHHHHHHccCC-CCCCC
Confidence 456777 46788988999999999999999999999998 69999999999999999999999998887 46899
Q ss_pred ccceeecccccc
Q 007792 151 YKNIRIKHTYIL 162 (589)
Q Consensus 151 ~~~i~I~~~~vl 162 (589)
..+|+|++|+++
T Consensus 171 ~~~v~I~~cg~~ 182 (183)
T PTZ00060 171 KKPVVVTDCGEL 182 (183)
T ss_pred cCCeEEEEeEEc
Confidence 999999999987
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.6e-36 Score=279.22 Aligned_cols=144 Identities=33% Similarity=0.511 Sum_probs=123.1
Q ss_pred EEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCccc
Q 007792 4 LIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEIR 83 (589)
Q Consensus 4 ~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 83 (589)
.|+|++|+|+|+||.+.||+||+||++||+.+||+++.||||+|+||||||++.....+.. ++ ..+++|..
T Consensus 1 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~~--~~-------~~~~~e~~ 71 (155)
T cd01920 1 EFQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQKE--TL-------KPIKNEAG 71 (155)
T ss_pred CcEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCccc--cC-------CcccCccc
Confidence 3789999999999999999999999999999999999999999999999999875443321 11 34667754
Q ss_pred cCCCCCCCceEEEeccC-CCCCcceEEEEeCCCCCCCCC-----CcceEEEEecCHHHHHHHhhCccCCC----CCcccc
Q 007792 84 VDLKHAKTGTVAMASAG-ENLNASQFYMTLRDNLDYLDE-----KHTIFGEVAEGLETLSRINESFVDEK----NRPYKN 153 (589)
Q Consensus 84 ~~l~~~~~G~vs~a~~g-~~~~~sqFfI~l~~~~~~ld~-----~~~vFG~Vv~G~~vl~~i~~~~~~~~----~~p~~~ 153 (589)
..++ +.+|+||||+.+ +++++|||||+|.+ +|+||+ +|||||+|++||+||++|+.++++.. +.|..+
T Consensus 72 ~~~~-~~~G~v~ma~~~~~~s~~SqFfI~~~~-~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~ 149 (155)
T cd01920 72 NGLS-NTRGTIAMARTNAPDSATSQFFINLKD-NASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD 149 (155)
T ss_pred cccc-CCceEEEECCCCCCCCccceEEEECCC-chhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCC
Confidence 4444 589999999865 89999999999998 699995 79999999999999999999999765 588888
Q ss_pred eeecc
Q 007792 154 IRIKH 158 (589)
Q Consensus 154 i~I~~ 158 (589)
|+|..
T Consensus 150 v~i~~ 154 (155)
T cd01920 150 VIIES 154 (155)
T ss_pred eEEEE
Confidence 88865
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=3.4e-35 Score=269.43 Aligned_cols=146 Identities=42% Similarity=0.655 Sum_probs=132.2
Q ss_pred EEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCccc
Q 007792 4 LIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEIR 83 (589)
Q Consensus 4 ~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 83 (589)
+|+|++|+|+|+||++.||++|+||++||+.++|+++.||||+|+++||||++......+ +.++ ..+++|..
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~-------~~~~~E~~ 72 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPG-------YKFPDENF 72 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCC-------CccCCccc
Confidence 478999999999999999999999999999999999999999999999999988654432 2222 56888987
Q ss_pred cCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecc
Q 007792 84 VDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKH 158 (589)
Q Consensus 84 ~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~ 158 (589)
+.+.|..+|+|+|++.+++++++||||+|.+ +|+||++|+|||+|++||+||++|+.++++++++|..+|.|.+
T Consensus 73 ~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~-~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 73 PLKYHHRRGTLSMANAGPNTNGSQFFITTAP-TPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred cCcCcCCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 7776788999999999999999999999998 6999999999999999999999999999999999999999863
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.5e-34 Score=265.49 Aligned_cols=151 Identities=43% Similarity=0.681 Sum_probs=131.2
Q ss_pred EEEEEec-ceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 2 SVLIVTS-LGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 2 ~v~~~T~-~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
.|.|+|+ +|+|+|+||++.||++|+||++||+.++|+++.||+|+|+++||+|++..++..+...+ .....+++
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~-----~~~~~~~~ 75 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS-----TGGEPIPD 75 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEB-----TTBSCBSS
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccc-----cCcccccc
Confidence 4789997 99999999999999999999999999999999999999999999999886554211101 11135888
Q ss_pred cccc-CCCCCCCceEEEeccC--CCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeec
Q 007792 81 EIRV-DLKHAKTGTVAMASAG--ENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIK 157 (589)
Q Consensus 81 e~~~-~l~~~~~G~vs~a~~g--~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~ 157 (589)
|..+ .+.| .+|+|+|++.+ +++++|||||+|.+ .|+||++|+|||+|++||+||++|+.++++. +|.++|+|.
T Consensus 76 E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~-~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~ 151 (155)
T PF00160_consen 76 EFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSD-APHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTIS 151 (155)
T ss_dssp SGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSC-GGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEE
T ss_pred ccccccccc-cceeeeecccccCCCCCCceEEeeccC-CCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEE
Confidence 8753 4566 89999999986 78899999999998 6999999999999999999999999998877 999999999
Q ss_pred cccc
Q 007792 158 HTYI 161 (589)
Q Consensus 158 ~~~v 161 (589)
+|+|
T Consensus 152 ~cgv 155 (155)
T PF00160_consen 152 SCGV 155 (155)
T ss_dssp EEEE
T ss_pred EeEC
Confidence 9986
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-35 Score=266.26 Aligned_cols=146 Identities=38% Similarity=0.676 Sum_probs=136.3
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHhc--Cc-cCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccccccCCcc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCKI--KY-YNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~--~~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
-..|+|++.|..+..|.|++||..||.+ || |.|+.||||+|.||+||||++ ++|++|.+||+ ..|.+|
T Consensus 148 ~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiyg-------kkfdde- 219 (298)
T KOG0111|consen 148 DRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYG-------KKFDDE- 219 (298)
T ss_pred cccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccc-------cccccc-
Confidence 4689999999999999999999999976 34 999999999999999999999 78999999998 788999
Q ss_pred ccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccccc
Q 007792 83 RVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYIL 162 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~vl 162 (589)
++.|+|..+|+|+|||+|+|+||||||||+.. +.|||++|+|||.||+||+||.+|++..+ +.+.|...|+|..|+.+
T Consensus 220 nf~lkht~pgtlsmansgantngsqffict~k-tdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 220 NFTLKHTMPGTLSMANSGANTNGSQFFICTEK-TDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGKPQQKVKIVECGEI 297 (298)
T ss_pred ceeeecCCCceeeccccCCCCCCceEEEEecc-cccccCceeEEeeecchHHHHHHHHhccC-CCCCcceEEEEEecccc
Confidence 69999999999999999999999999999988 79999999999999999999999987644 67999999999999865
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=5.8e-34 Score=266.60 Aligned_cols=134 Identities=33% Similarity=0.500 Sum_probs=108.8
Q ss_pred EecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCC---------------------C
Q 007792 6 VTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGG---------------------D 64 (589)
Q Consensus 6 ~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~---------------------~ 64 (589)
.|++|+|+|+||++.||+||.||++||+.+||+++.||||+++||||||++..++.+. .
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 5999999999999999999999999999999999999999999999999998654332 1
Q ss_pred CcccccccccccccCCccccCCCCCCCceEEEeccC--CCCCcceEEEEeCC------CCCCCCCCcceEEEEecCHHHH
Q 007792 65 SVYKFLYGEQARFFGDEIRVDLKHAKTGTVAMASAG--ENLNASQFYMTLRD------NLDYLDEKHTIFGEVAEGLETL 136 (589)
Q Consensus 65 ~~~~~~~~~~~~~~~~e~~~~l~~~~~G~vs~a~~g--~~~~~sqFfI~l~~------~~~~ld~~~~vFG~Vv~G~~vl 136 (589)
++|+..+.. . ...+..+.++|+.+|+||||+.+ +++++|||||++.+ .+|+||++|+|||+|++||+||
T Consensus 83 ~~~~~~~~~--~-~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl 159 (176)
T cd01924 83 PVYGKTLEE--A-GRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDIL 159 (176)
T ss_pred CccCccccc--c-cccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHH
Confidence 222210000 0 00222355667789999999987 68999999999983 4799999999999999999999
Q ss_pred HHHhhC
Q 007792 137 SRINES 142 (589)
Q Consensus 137 ~~i~~~ 142 (589)
++|...
T Consensus 160 ~~I~~g 165 (176)
T cd01924 160 RELKVG 165 (176)
T ss_pred HhhcCC
Confidence 999643
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-28 Score=223.37 Aligned_cols=146 Identities=40% Similarity=0.676 Sum_probs=132.9
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHhcC---ccCCceEEE---eecCcccccCCCC-CCCCCCCCcccccccccccccC
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCKIK---YYNGCLFHT---VQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQARFFG 79 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~~---~Y~g~~f~r---v~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (589)
+++|+++++||.+..|+|++||..||.+. -|.+.+||+ .+++||+||||++ .+++++.+||+ ..|+
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~-------ekF~ 87 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYG-------EKFD 87 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecc-------cccC
Confidence 78999999999999999999999999753 399999999 3447999999998 78999999986 6788
Q ss_pred CccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeeccc
Q 007792 80 DEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHT 159 (589)
Q Consensus 80 ~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~ 159 (589)
+| ++.|+|..+|+|+|||.||++|+|||||++.. +.|||++|+|||+|++||+|+++|+. ....++++.++|+|.+|
T Consensus 88 De-nFilkhtgpGiLSmaNagpntngsqffictak-tewLdgkhVVfGkv~eGm~iv~a~e~-~gs~~gk~~~~i~i~dc 164 (167)
T KOG0865|consen 88 DE-NFILKHTGPGILSMANAGPNTNGSQFFICTAK-TEWLDGKHVVFGKVKEGMDIVEAMER-FGSRNGKTSKKITIADC 164 (167)
T ss_pred Cc-CcEEecCCCCeeehhhcCCCccccEEEEEccc-cccccCceeEcCceEcccchhhhhhc-cCCcCCcccccEEEecC
Confidence 88 69999999999999999999999999999998 59999999999999999999999976 45568899999999999
Q ss_pred ccc
Q 007792 160 YIL 162 (589)
Q Consensus 160 ~vl 162 (589)
+.+
T Consensus 165 g~l 167 (167)
T KOG0865|consen 165 GQL 167 (167)
T ss_pred CcC
Confidence 864
No 29
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.3e-20 Score=179.17 Aligned_cols=91 Identities=36% Similarity=0.581 Sum_probs=84.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..|..||||+-|+++|+|..|+..|+.||+|+.|.||.++.||+++|||||+|+++.++..|++..+|++|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cccccccc
Q 007792 319 SQS-VSKLWNQF 329 (589)
Q Consensus 319 a~~-~~~~~~~~ 329 (589)
... +.+.|.+.
T Consensus 178 ERgRTvkgW~PR 189 (335)
T KOG0113|consen 178 ERGRTVKGWLPR 189 (335)
T ss_pred cccccccccccc
Confidence 875 55566443
No 30
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.2e-18 Score=153.68 Aligned_cols=111 Identities=25% Similarity=0.460 Sum_probs=90.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
+..+.||||||+..+++.+|+.+|..||+|..|.|..+ +.|||||+|++..+|..|+..|+|..|+|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34689999999999999999999999999999999886 5599999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCccCCCCCCCCccCCC
Q 007792 320 QSVSKLWNQFRRRDHQTGKGKGCFKCGGLDHIAKDCTG 357 (589)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 357 (589)
+............ ...+...|+.||..+++.+.|..
T Consensus 83 ~G~~r~~r~gg~~--~~~g~~~~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 83 TGRPRGSRRGGSR--PPRGRGFCYRCGERGHIGRNCKD 118 (195)
T ss_pred cCCccccccCCCC--CcccccccccCCCcccccccccc
Confidence 8755422211111 11223338889988887776655
No 31
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=5.1e-17 Score=147.59 Aligned_cols=85 Identities=32% Similarity=0.485 Sum_probs=80.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.++.|++++|||||+|.+.++|+.||+.||+..|+|+.|.|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 320 QSVSK 324 (589)
Q Consensus 320 ~~~~~ 324 (589)
.+...
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 86443
No 32
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.2e-16 Score=143.16 Aligned_cols=80 Identities=28% Similarity=0.482 Sum_probs=77.2
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
..-|||||||+.+||.+|..+|++||+|+.|.++.|+.||+++||||+.|+++.+...|+..|||+.|.|+.|+|.+...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998654
No 33
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.57 E-value=1.3e-14 Score=152.62 Aligned_cols=83 Identities=27% Similarity=0.503 Sum_probs=78.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
...+|||+|||+.+++++|.++|++||.|..|+|+.+..||.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
++.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 653
No 34
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=3.6e-14 Score=129.88 Aligned_cols=81 Identities=31% Similarity=0.470 Sum_probs=78.0
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
-++|-|-||.+-|+.++|..+|++||.|.+|.|+.|+.|+.++|||||-|....+|+.|+++|+|.+|+|+.|.|++|+.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred c
Q 007792 322 V 322 (589)
Q Consensus 322 ~ 322 (589)
.
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 35
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=1e-13 Score=143.80 Aligned_cols=84 Identities=29% Similarity=0.553 Sum_probs=78.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEe
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD--RRIHVDF 318 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g--r~i~V~~ 318 (589)
..++|||+|||+.+|+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.||+..|.| ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999998876 7899999
Q ss_pred cccccc
Q 007792 319 SQSVSK 324 (589)
Q Consensus 319 a~~~~~ 324 (589)
+....+
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 986443
No 36
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=2.3e-14 Score=113.49 Aligned_cols=70 Identities=36% Similarity=0.726 Sum_probs=67.3
Q ss_pred EEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 007792 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIH 315 (589)
Q Consensus 245 i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~ 315 (589)
|||+|||+++|+++|.++|++||.|..+.++.+ .++..++||||+|.+.++|..|++.|+|..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 7788999999999999999999999999999999985
No 37
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.55 E-value=2.2e-14 Score=148.74 Aligned_cols=83 Identities=27% Similarity=0.553 Sum_probs=79.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
....++|||+|||+++|+++|+++|..||+|+.|+|+.++.|++++|||||+|.+.++|..||+.|||..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 007792 319 SQS 321 (589)
Q Consensus 319 a~~ 321 (589)
+++
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 875
No 38
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.54 E-value=2.2e-14 Score=151.06 Aligned_cols=83 Identities=24% Similarity=0.522 Sum_probs=79.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
+.++|||+|||+.+|+++|+++|+.||+|..|+|+.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 643
No 39
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.2e-14 Score=121.54 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=77.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
..+|||||||++.|+|++|.++|+++|+|..|-|-.|+.+..+.|||||+|.+.++|..|++.++|+.++.++|.|.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 40
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.6e-14 Score=132.65 Aligned_cols=82 Identities=28% Similarity=0.479 Sum_probs=79.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
..++|-|.||+.++++.+|+++|.+||.|..|.|+.|+.||.++|||||.|.+.++|.+||..|||.-++.-.|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
|.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 74
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.51 E-value=1.9e-14 Score=138.07 Aligned_cols=105 Identities=28% Similarity=0.649 Sum_probs=93.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
+.++||||||.+.++.++|+..|.+||+|+.|.|+.+ |+||.|.-.++|..|+..|+|.+|.|++|+|+++.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 5689999999999999999999999999999999874 99999999999999999999999999999999998
Q ss_pred ccccccccccCCCCCCCCCCCCccCCCCCCCCccCCCCCC
Q 007792 321 SVSKLWNQFRRRDHQTGKGKGCFKCGGLDHIAKDCTGQQP 360 (589)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 360 (589)
+... ...+.+...+|++||..|||+++||....
T Consensus 149 srlr-------tapgmgDq~~cyrcGkeghwskEcP~~~~ 181 (346)
T KOG0109|consen 149 SRLR-------TAPGMGDQSGCYRCGKEGHWSKECPVDRT 181 (346)
T ss_pred cccc-------cCCCCCCHHHheeccccccccccCCccCC
Confidence 7543 22334556679999999999999998743
No 42
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=4.9e-14 Score=132.10 Aligned_cols=80 Identities=31% Similarity=0.510 Sum_probs=74.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
..++||||+|+|.|..+.|+.+|++||+|+++.|+.|+.||+++|||||+|.+.++|.+|++..| -.|+|++.+|++|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 45799999999999999999999999999999999999999999999999999999999997544 57999999999886
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 43
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=4.1e-13 Score=106.59 Aligned_cols=70 Identities=34% Similarity=0.697 Sum_probs=65.1
Q ss_pred EEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 007792 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIH 315 (589)
Q Consensus 245 i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~ 315 (589)
|||+|||+.+++++|.++|..||.|..+.+..++. +.++|+|||+|.+.++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 89999999999999999999999999999999884
No 44
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.45 E-value=2.2e-13 Score=148.75 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=78.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
..++|||+||++.+++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|..||..|||+.|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
+.
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 53
No 45
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.6e-13 Score=117.25 Aligned_cols=81 Identities=22% Similarity=0.420 Sum_probs=77.9
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.-+|||.++...+|+++|...|..||+|+.|.+..|..||..+|||+|+|++.++|++|+..|||..|.|..|.|.|+-.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q 007792 322 V 322 (589)
Q Consensus 322 ~ 322 (589)
.
T Consensus 152 ~ 152 (170)
T KOG0130|consen 152 K 152 (170)
T ss_pred c
Confidence 3
No 46
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=5.4e-13 Score=136.02 Aligned_cols=77 Identities=23% Similarity=0.403 Sum_probs=72.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCH--HHHHHHHHhcCCceeCCeEEEEEe
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENR--QACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~--~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
....||||||++.+|+++|..+|+.||.|..|.|+ +.|| +|||||+|... .++.+||..|||..|.|+.|+|+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45799999999999999999999999999999999 4677 89999999987 789999999999999999999999
Q ss_pred ccc
Q 007792 319 SQS 321 (589)
Q Consensus 319 a~~ 321 (589)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 876
No 47
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.42 E-value=5.8e-13 Score=145.42 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=77.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
..++|||+||++.+++++|+++|.+||+|..|.|+.++.||+++|||||+|.+.++|..||..|||..|.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
.
T Consensus 186 ~ 186 (612)
T TIGR01645 186 N 186 (612)
T ss_pred c
Confidence 3
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=7.6e-13 Score=128.63 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=70.9
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.++|||+|||+.+|+++|+++|+.||+|..|.|+.+.. .+|||||+|.+.++|..|| .|||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998754 4699999999999999999 5999999999999999864
No 49
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.40 E-value=1.6e-12 Score=141.92 Aligned_cols=81 Identities=27% Similarity=0.469 Sum_probs=77.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
...+|||+|||+.+|+++|.++|++||.|..|.|+.+..+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 4
No 50
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2.4e-12 Score=130.53 Aligned_cols=85 Identities=22% Similarity=0.400 Sum_probs=78.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEEe
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID-DRRIHVDF 318 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~-gr~i~V~~ 318 (589)
+..+-||||.||.++.|++|..+|++.|+|-.++|++|+.+|.++|||||+|.+.+.|+.||+.||+.+|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999985 99999988
Q ss_pred cccccc
Q 007792 319 SQSVSK 324 (589)
Q Consensus 319 a~~~~~ 324 (589)
+..+..
T Consensus 161 Svan~R 166 (506)
T KOG0117|consen 161 SVANCR 166 (506)
T ss_pred eeecce
Confidence 765443
No 51
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=7.4e-13 Score=126.12 Aligned_cols=82 Identities=32% Similarity=0.605 Sum_probs=79.0
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
...|||+.|...++-+.|++.|.+||+|.+++|++|..|+|++|||||.|...++|+.||..|||..|+++.|+-.||.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cc
Q 007792 322 VS 323 (589)
Q Consensus 322 ~~ 323 (589)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 55
No 52
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.37 E-value=2.6e-12 Score=142.12 Aligned_cols=82 Identities=20% Similarity=0.408 Sum_probs=78.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
...+|||+|||+.+|+++|.++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 53
No 53
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3.3e-12 Score=122.15 Aligned_cols=77 Identities=27% Similarity=0.358 Sum_probs=70.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
+...+|||+||++.+|+++|++||+.||+|..|.|+.+.. ..+||||+|.+.++|..|| .|+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 3468999999999999999999999999999999998843 4589999999999999999 79999999999999876
Q ss_pred c
Q 007792 320 Q 320 (589)
Q Consensus 320 ~ 320 (589)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 54
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.1e-13 Score=123.30 Aligned_cols=83 Identities=23% Similarity=0.438 Sum_probs=79.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
...+||||+|..++|+.-|...|-.||.|+.|.|+.|..+++.+|||||+|...++|.+||..||+.+|.|+.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
|..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 843
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=2e-12 Score=126.29 Aligned_cols=82 Identities=27% Similarity=0.488 Sum_probs=75.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
+...+.|||.|||+...+.||..+|.+||+|.+|.|+.+.. .+||||||+|++.++|++|-..|||..|.|++|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 34467999999999999999999999999999999999743 3899999999999999999999999999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
|...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8763
No 56
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=5.4e-12 Score=99.37 Aligned_cols=72 Identities=36% Similarity=0.679 Sum_probs=67.5
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 244 VLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 244 ~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
+|||+|||..+++++|..+|.+||+|..+.++.++ +.++|+|||+|.+.++|..|+..|+|..|.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 6788999999999999999999999999999999874
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.33 E-value=4.3e-12 Score=138.48 Aligned_cols=76 Identities=30% Similarity=0.563 Sum_probs=70.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccC--CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRF--GTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~--G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..++|||+||++.+|+++|+++|++| |.|..|.++. +||||+|.+.++|.+||+.|||.+|.|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 9999998754 6999999999999999999999999999999999
Q ss_pred cccccc
Q 007792 319 SQSVSK 324 (589)
Q Consensus 319 a~~~~~ 324 (589)
|++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.32 E-value=1.5e-12 Score=117.33 Aligned_cols=80 Identities=25% Similarity=0.371 Sum_probs=77.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
...|||||||+..++++.|.++|-+.|+|+.+.|+.++.+.+..|||||+|.++++|+-||+.||...+-|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999886
No 59
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.32 E-value=4.7e-12 Score=141.66 Aligned_cols=79 Identities=32% Similarity=0.547 Sum_probs=76.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.+|||+|||+++|+++|.++|++||+|..|.|+.+..|++++|||||+|.+.++|..||..||+..|.|+.|.|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999864
No 60
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.31 E-value=7.4e-12 Score=136.58 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=76.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
.+..+|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|| .|+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999 58999999999999987
Q ss_pred cc
Q 007792 320 QS 321 (589)
Q Consensus 320 ~~ 321 (589)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 54
No 61
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.31 E-value=5.3e-12 Score=137.81 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=74.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEEec
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID-DRRIHVDFS 319 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~-gr~i~V~~a 319 (589)
..++|||+|||+++++++|.++|++||.|..|+|+.| .+|+++|||||+|.+.++|+.||+.||+..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 88999999999999999999999999999885 888888766
Q ss_pred cc
Q 007792 320 QS 321 (589)
Q Consensus 320 ~~ 321 (589)
..
T Consensus 136 ~~ 137 (578)
T TIGR01648 136 VD 137 (578)
T ss_pred cc
Confidence 43
No 62
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=1e-11 Score=97.37 Aligned_cols=71 Identities=35% Similarity=0.670 Sum_probs=67.3
Q ss_pred EecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 247 VCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 247 V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
|+|||..+++++|..+|.+||.|..+.+..++.++.++|||||+|.+.++|..|+..|++..|.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988788999999999999999999999999999999999874
No 63
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=5.6e-12 Score=127.84 Aligned_cols=75 Identities=32% Similarity=0.551 Sum_probs=70.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
-+.|||.||+.+||++.|+++|++||.|..|+.+.| ||||.|.+.++|.+|++.|||++|+|..|.|.+|+|
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 479999999999999999999999999999988765 999999999999999999999999999999999998
Q ss_pred ccc
Q 007792 322 VSK 324 (589)
Q Consensus 322 ~~~ 324 (589)
..+
T Consensus 331 ~~k 333 (506)
T KOG0117|consen 331 VDK 333 (506)
T ss_pred hhh
Confidence 544
No 64
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.2e-11 Score=111.44 Aligned_cols=79 Identities=22% Similarity=0.400 Sum_probs=71.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
....|||||||.++.+.+|+.+|-+||.|..|.|... ..+.+||||+|++..+|+.||..-+|..++|..|.|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4579999999999999999999999999999988543 2356899999999999999999999999999999999998
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
..
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 64
No 65
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.4e-11 Score=117.61 Aligned_cols=77 Identities=22% Similarity=0.507 Sum_probs=72.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.+.+++||||||+..+|++.|++.|+.||.|.+|+|.++ +|||||.|++.|+|..||..|||.+|.|..++|.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 556899999999999999999999999999999999886 48999999999999999999999999999999999
Q ss_pred ccc
Q 007792 319 SQS 321 (589)
Q Consensus 319 a~~ 321 (589)
-+.
T Consensus 235 GKe 237 (321)
T KOG0148|consen 235 GKE 237 (321)
T ss_pred ccc
Confidence 875
No 66
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.4e-11 Score=116.55 Aligned_cols=86 Identities=23% Similarity=0.490 Sum_probs=80.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
.....+.|.|--||.++|+++|+.+|...|+|.+|+++.|+.+|++.||+||.|-.+++|++||..|||..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
||+|..
T Consensus 117 yARPSs 122 (360)
T KOG0145|consen 117 YARPSS 122 (360)
T ss_pred eccCCh
Confidence 999843
No 67
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.27 E-value=1.5e-11 Score=137.67 Aligned_cols=83 Identities=27% Similarity=0.479 Sum_probs=78.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
....+|||+||++.+|+++|+++|++||.|..|+|+.+ .+|.++|||||+|.+.++|.+|+..|||..|+|++|.|.+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 35678999999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred cccc
Q 007792 320 QSVS 323 (589)
Q Consensus 320 ~~~~ 323 (589)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8643
No 68
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.26 E-value=1e-11 Score=130.66 Aligned_cols=81 Identities=27% Similarity=0.517 Sum_probs=78.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~ 322 (589)
..|||||||+++++++|..+|+..|.|..++++.|+.||+++|||||+|.+.+.|..|+..|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred c
Q 007792 323 S 323 (589)
Q Consensus 323 ~ 323 (589)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 69
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=2e-11 Score=122.67 Aligned_cols=80 Identities=34% Similarity=0.617 Sum_probs=77.3
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
..+|||+|||+.+|+++|..+|.+||.|..+.|+.++.++.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999753
No 70
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=4.6e-11 Score=97.79 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=72.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
-+..|||.|||+.+|.+++.++|++||.|.+|+|-..+. .+|-|||.|++..+|..|+..|+|..++++.|.|-+-+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 357899999999999999999999999999999977655 46999999999999999999999999999999999987
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 6
No 71
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.1e-10 Score=108.67 Aligned_cols=82 Identities=26% Similarity=0.507 Sum_probs=78.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
....|||-||.+++.|.-|.++|++||.|..|+|+.|..|.+.+|||||.+.+.++|..||..|||..++++.|.|.|..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 53
No 72
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=6.3e-11 Score=93.71 Aligned_cols=74 Identities=39% Similarity=0.705 Sum_probs=68.7
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 244 VLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 244 ~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
+|||+|||+.+++++|..+|..||.|..+.+..+..+ .+.|+|||+|.+.++|..|+..|++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999987554 6789999999999999999999999999999999864
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.2e-11 Score=117.38 Aligned_cols=86 Identities=27% Similarity=0.434 Sum_probs=81.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
..|.+++|||-.||.+..+.+|.++|..||.|++.+|..|..|+.++||+||.|.+..+|+.||..|||+.|+-++|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
+.+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 987743
No 74
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.20 E-value=6e-11 Score=129.77 Aligned_cols=79 Identities=19% Similarity=0.320 Sum_probs=73.0
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 239 KPPENVLFVCKLNP-VTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~-~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
.++.++|||+||++ .+|+++|.++|+.||.|..|+|+.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45778999999998 6999999999999999999999886 35899999999999999999999999999999999
Q ss_pred ecccc
Q 007792 318 FSQSV 322 (589)
Q Consensus 318 ~a~~~ 322 (589)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98753
No 75
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.19 E-value=3e-13 Score=134.55 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=53.9
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID 310 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~ 310 (589)
..+|+|++|+..+...++.++|..+|+|.+..+.. +...-+|-|+|....+...|+. ++|.++.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 46899999999999999999999999999887754 3344678899999999999995 6777766
No 76
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=2.7e-11 Score=122.34 Aligned_cols=82 Identities=27% Similarity=0.495 Sum_probs=74.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc-eeC--CeEEEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA-LID--DRRIHVD 317 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~-~i~--gr~i~V~ 317 (589)
...+||||-|+..+||.+|+++|++||.|++|.|+.+ ..+.++|||||.|.+.+.|..||+.|||. .+. ..+|.|.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 3679999999999999999999999999999999998 45889999999999999999999999995 454 4789999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
||.+..
T Consensus 202 FADtqk 207 (510)
T KOG0144|consen 202 FADTQK 207 (510)
T ss_pred ecccCC
Confidence 998744
No 77
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.16 E-value=5.8e-11 Score=114.43 Aligned_cols=74 Identities=27% Similarity=0.559 Sum_probs=70.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~ 322 (589)
.+|||||||.++++.+|+.+|++||+|.+|.|+++ ||||..++...|..||..|||.+|+|..|+|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999885 9999999999999999999999999999999999876
Q ss_pred cc
Q 007792 323 SK 324 (589)
Q Consensus 323 ~~ 324 (589)
.+
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 44
No 78
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.16 E-value=1e-10 Score=127.94 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=69.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh--cCCceeCCeEEEEEe
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSK--MDNALIDDRRIHVDF 318 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~--l~g~~i~gr~i~V~~ 318 (589)
|..+|||+|||+.+++++|.++|++||.|..|.|+. .++||||+|.+.++|..||.. +++..|.|++|.|+|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 468999999999999999999999999999999986 348999999999999999986 478999999999999
Q ss_pred ccc
Q 007792 319 SQS 321 (589)
Q Consensus 319 a~~ 321 (589)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 975
No 79
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.15 E-value=5.4e-11 Score=124.10 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=75.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
..||||||.+++++.+|..+|+.||.|..|.+..+..||.++|||||+|.+.++|..|+..|||++|.|+.|+|.+-..
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 3499999999999999999999999999999999988999999999999999999999999999999999999987654
No 80
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=1.4e-10 Score=92.08 Aligned_cols=61 Identities=28% Similarity=0.425 Sum_probs=55.6
Q ss_pred HHHHHHHhc----cCCCeEEEE-EeecCCC--CCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 256 DEDLHTIFS----RFGTVVSAE-IIRDFKT--GDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 256 e~~L~~~F~----~~G~v~~~~-i~~d~~t--g~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
+++|.++|. +||.|..|. |+.++.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777666 899999999999999999999999999999999986
No 81
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.1e-10 Score=120.94 Aligned_cols=81 Identities=32% Similarity=0.495 Sum_probs=75.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-----CC-ceeCCeEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKM-----DN-ALIDDRRI 314 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l-----~g-~~i~gr~i 314 (589)
-..+|||.|||+++|++.|.+.|++||+|.++.|+.++.|+.++|.|||.|.++..|+.||.+. .| ..|+|+.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3579999999999999999999999999999999999999999999999999999999999876 24 78999999
Q ss_pred EEEeccc
Q 007792 315 HVDFSQS 321 (589)
Q Consensus 315 ~V~~a~~ 321 (589)
.|..|-+
T Consensus 371 kv~~Av~ 377 (678)
T KOG0127|consen 371 KVTLAVT 377 (678)
T ss_pred eeeeccc
Confidence 9998865
No 82
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=3.2e-11 Score=119.07 Aligned_cols=77 Identities=23% Similarity=0.428 Sum_probs=74.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
+.||||.|.+++.|+.|+..|..||+|++|.+.+|+.|++.+|||||+|+-.+.|+.|++.|||..++|+.|+|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999753
No 83
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.9e-10 Score=119.39 Aligned_cols=82 Identities=29% Similarity=0.495 Sum_probs=75.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
+.-.|.|.||||.+...+|+.+|+.||.|..|.|+..+ .|+.+|||||.|....+|..||+.|||.+|+|++|-|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 35689999999999999999999999999999999764 46667999999999999999999999999999999999998
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
++.
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 754
No 84
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=3e-10 Score=85.90 Aligned_cols=56 Identities=25% Similarity=0.572 Sum_probs=50.9
Q ss_pred HHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 259 LHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 259 L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
|.++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..|.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 589999999999999999999999999999999986
No 85
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.11 E-value=1.3e-10 Score=105.03 Aligned_cols=83 Identities=29% Similarity=0.510 Sum_probs=76.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVS-AEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~-~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
-..+..|||+||.+.+++..|..+|+.||.|.. -.|+.+..||.++|||||.|.+.+.+.+|+..|||..++.++|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 344589999999999999999999999999875 4788999999999999999999999999999999999999999999
Q ss_pred eccc
Q 007792 318 FSQS 321 (589)
Q Consensus 318 ~a~~ 321 (589)
++..
T Consensus 173 ya~k 176 (203)
T KOG0131|consen 173 YAFK 176 (203)
T ss_pred EEEe
Confidence 9975
No 86
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=1.7e-10 Score=116.72 Aligned_cols=81 Identities=22% Similarity=0.500 Sum_probs=74.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc-eeCC--eEEEEEe
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA-LIDD--RRIHVDF 318 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~-~i~g--r~i~V~~ 318 (589)
..++|||.||..++|.+|+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+|++. .|-| .+|.|.+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 468999999999999999999999999999999999999999999999999999999999999884 4555 7888988
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
|...
T Consensus 114 Ad~E 117 (510)
T KOG0144|consen 114 ADGE 117 (510)
T ss_pred cchh
Confidence 8763
No 87
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=9.8e-10 Score=114.83 Aligned_cols=114 Identities=21% Similarity=0.456 Sum_probs=87.1
Q ss_pred cccCCCCcccccCCHHHHHHHHHhhhh---hhhhhhhhccCCCCCCCCCCCCceEEEecCCCCCCHHHHHHHhccCCCeE
Q 007792 194 RLEDDWVPLDEQLSAAELEQVIRSKDA---RSSAVVLESIGDIPDADIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVV 270 (589)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~ 270 (589)
.|.++++++. ++...+.++.+... +.....+.... .....|||.||++.++...|..+|+.||.|+
T Consensus 36 slgy~yvnf~---~~~da~~A~~~~n~~~~~~~~~rim~s~--------rd~~~~~i~nl~~~~~~~~~~d~f~~~g~il 104 (369)
T KOG0123|consen 36 SLGYAYVNFQ---QPADAERALDTMNFDVLKGKPIRIMWSQ--------RDPSLVFIKNLDESIDNKSLYDTFSEFGNIL 104 (369)
T ss_pred ccceEEEecC---CHHHHHHHHHHcCCcccCCcEEEeehhc--------cCCceeeecCCCcccCcHHHHHHHHhhcCee
Confidence 3566666655 45555655555444 22222111111 1122399999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 271 SAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 271 ~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
+|+++.+.. | ++|| ||+|+++++|..||..|||..+.|+.|-|.....
T Consensus 105 S~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 105 SCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred EEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 999999854 4 9999 9999999999999999999999999999988765
No 88
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.95 E-value=1.4e-09 Score=108.78 Aligned_cols=82 Identities=15% Similarity=0.308 Sum_probs=63.0
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFK---TGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~---tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
..|.|.||.+.+|.++++.+|+..|+|..+.|+.+.. .....-.|||.|.+...+..|-.+.|-+.|+--.|+|-+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 3899999999999999999999999999999876422 2334568999999999999998654545555555566665
Q ss_pred ccccc
Q 007792 320 QSVSK 324 (589)
Q Consensus 320 ~~~~~ 324 (589)
.....
T Consensus 88 ~~~~p 92 (479)
T KOG4676|consen 88 DEVIP 92 (479)
T ss_pred CCCCc
Confidence 54433
No 89
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.95 E-value=2e-09 Score=99.62 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=76.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRF-GTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~-G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
....+||..||..+.+.+|..+|.+| |.|..+.+.+++.||.++|||||+|++.+.|.-|.+.||+..|.|+.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45789999999999999999999998 78888899899999999999999999999999999999999999999999997
Q ss_pred ccc
Q 007792 320 QSV 322 (589)
Q Consensus 320 ~~~ 322 (589)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 664
No 90
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.91 E-value=3.8e-09 Score=106.95 Aligned_cols=79 Identities=19% Similarity=0.381 Sum_probs=73.5
Q ss_pred CceEEEecCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFS-RFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~-~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
...+||.|||+++.|++|+.+|. +.|+|.+|.+..| .+||++|+|.|+|++++.+++|++.||...+.|++|.|+-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999996 7899999999999 679999999999999999999999999999999999998654
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 3
No 91
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.89 E-value=3.9e-09 Score=109.74 Aligned_cols=82 Identities=21% Similarity=0.440 Sum_probs=77.2
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
..+|||.+|+..|...+|+.+|++||+|+-++||.+..+...+||+||++.+..+|.+||..|+-++|+|+.|.|+-++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 35899999999999999999999999999999999988888899999999999999999999999999999999999876
Q ss_pred cc
Q 007792 322 VS 323 (589)
Q Consensus 322 ~~ 323 (589)
.+
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 43
No 92
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.89 E-value=5.1e-09 Score=98.53 Aligned_cols=81 Identities=22% Similarity=0.455 Sum_probs=73.1
Q ss_pred CCceEEEecCCCCCCHHHHHH----HhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHT----IFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~----~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
|+.||||-||+..+..++|+. +|++||.|..|... .|.+.+|-|||.|.+.+.|-.|+..|+|+.+-|+.+.|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999998887 99999999988775 36789999999999999999999999999999999999
Q ss_pred Eecccccc
Q 007792 317 DFSQSVSK 324 (589)
Q Consensus 317 ~~a~~~~~ 324 (589)
+||+....
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99987544
No 93
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=1.3e-09 Score=116.86 Aligned_cols=131 Identities=13% Similarity=0.284 Sum_probs=97.4
Q ss_pred ccccCCCCcccccCCHHHHHHHHHhhhhhhhhhhhhccC-----CC-CCCCCCCCCceEEEecCCCCCCHHHHHHHhccC
Q 007792 193 VRLEDDWVPLDEQLSAAELEQVIRSKDARSSAVVLESIG-----DI-PDADIKPPENVLFVCKLNPVTEDEDLHTIFSRF 266 (589)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~i~V~nL~~~~te~~L~~~F~~~ 266 (589)
+.+++.+|++....++..+.++++..........+..-- .. .....+...+.|+|.|||+.++-.+|+++|..|
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF 637 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF 637 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc
Confidence 456778888776555555555555333322222111111 00 111223346799999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccccc
Q 007792 267 GTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSVS 323 (589)
Q Consensus 267 G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~~ 323 (589)
|.|..|.|+.-...+.++|||||+|-+..+|..|+.+|..+-|.|+.|.++||+.-.
T Consensus 638 GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 638 GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 999999998765566679999999999999999999999999999999999998633
No 94
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=4e-09 Score=113.25 Aligned_cols=78 Identities=31% Similarity=0.494 Sum_probs=70.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKT---GDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~t---g~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
++|||.||++.+|.+.|...|...|.|..+.|...+.. -.+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988765432 235699999999999999999999999999999999999
Q ss_pred c
Q 007792 320 Q 320 (589)
Q Consensus 320 ~ 320 (589)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 95
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.83 E-value=3.3e-09 Score=107.17 Aligned_cols=117 Identities=17% Similarity=0.334 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhccCCCCCCCCCC-----CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC
Q 007792 208 AAELEQVIRSKDARSSAVVLESIGDIPDADIKP-----PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGD 282 (589)
Q Consensus 208 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~ 282 (589)
++.+..++....++..+..++.+.+++...... ...+||||+||..+++.+|+++|.+||.|..+.++.|..+..
T Consensus 58 ~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~ 137 (311)
T KOG4205|consen 58 PEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSR 137 (311)
T ss_pred CcchheeecccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccc
Confidence 334445555555555555566555555544333 345999999999999999999999999999999999999999
Q ss_pred cccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccccccc
Q 007792 283 SLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSVSKL 325 (589)
Q Consensus 283 ~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~~~~ 325 (589)
++||+||.|.+.+++..++ ...-+.|+|+.+.|..|.++...
T Consensus 138 ~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 138 PRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cccceeeEeccccccceec-ccceeeecCceeeEeeccchhhc
Confidence 9999999999999999998 46788999999999999885543
No 96
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.77 E-value=2e-08 Score=111.14 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=69.2
Q ss_pred CCCceEEEecCCCC----------CCHHHHHHHhccCCCeEEEEEeecC---CCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 007792 240 PPENVLFVCKLNPV----------TEDEDLHTIFSRFGTVVSAEIIRDF---KTGDSLNYAFIEFENRQACERAYSKMDN 306 (589)
Q Consensus 240 ~~~~~i~V~nL~~~----------~te~~L~~~F~~~G~v~~~~i~~d~---~tg~~~g~aFV~f~~~~~a~~A~~~l~g 306 (589)
.+..+|+|.||... ...++|+++|++||.|+.|.|+.+. .++...|||||+|.+.++|+.||..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 35678999999642 1236789999999999999998652 3456789999999999999999999999
Q ss_pred ceeCCeEEEEEeccc
Q 007792 307 ALIDDRRIHVDFSQS 321 (589)
Q Consensus 307 ~~i~gr~i~V~~a~~ 321 (589)
.+|+|+.|.|.|...
T Consensus 487 r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDRVVVAAFYGE 501 (509)
T ss_pred CEECCeEEEEEEeCH
Confidence 999999999999754
No 97
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.76 E-value=1.3e-08 Score=109.87 Aligned_cols=77 Identities=26% Similarity=0.453 Sum_probs=71.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
..+|||||+|+.++++.+|..+|+.||+|.+|.++. ++|||||.+....+|.+|+.+|+...|.++.|+|.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 457999999999999999999999999999999876 56899999999999999999999999999999999997
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
.+.
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 643
No 98
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=2e-08 Score=99.61 Aligned_cols=80 Identities=23% Similarity=0.411 Sum_probs=75.9
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.+.|||..+.+++++++|+.+|+-||+|+.|.+...+.++..+||+||+|.+..+...||..||-+.++|.-|+|--+-.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999976543
No 99
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.4e-08 Score=104.43 Aligned_cols=75 Identities=32% Similarity=0.503 Sum_probs=70.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~ 322 (589)
..|||| +.+|+..|.++|+.+|+|.+++|+.+. | +.|||||.|.+..+|.+||..||...|.|++|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999997 6 9999999999999999999999999999999999999754
Q ss_pred c
Q 007792 323 S 323 (589)
Q Consensus 323 ~ 323 (589)
+
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 3
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.72 E-value=7.3e-08 Score=95.53 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=72.8
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVS--------AEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRR 313 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~--------~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~ 313 (589)
++.|||.|||.++|.+++.++|++||.|.. |+|..+.. |+.+|-|+|.|.-.+++..||+.|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 456999999999999999999999998863 78888844 999999999999999999999999999999999
Q ss_pred EEEEeccc
Q 007792 314 IHVDFSQS 321 (589)
Q Consensus 314 i~V~~a~~ 321 (589)
|+|+.|+-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99999874
No 101
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.69 E-value=6.4e-08 Score=101.56 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=69.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~ 322 (589)
.+|||.|||++++..+|+++|.+||.|+...|..-...+++.|||||+|.+..+++.||++ +-..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4699999999999999999999999999887765433455559999999999999999965 688899999999987764
Q ss_pred c
Q 007792 323 S 323 (589)
Q Consensus 323 ~ 323 (589)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 102
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=4.1e-08 Score=97.38 Aligned_cols=74 Identities=24% Similarity=0.480 Sum_probs=66.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEEEecc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKM-DNALIDDRRIHVDFSQ 320 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l-~g~~i~gr~i~V~~a~ 320 (589)
-++|||++|...+++.+|...|.+||+|..+.++.. +++|||+|.+.++|+.|...+ |...|+|.+|.|.|+.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 369999999999999999999999999999999774 369999999999999888654 6677899999999998
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 103
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.68 E-value=1.5e-08 Score=102.50 Aligned_cols=81 Identities=26% Similarity=0.423 Sum_probs=74.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
...+||||+|+|.++++.|...|.+||+|.+|.++.++.++.++||+||+|.+.+.+.++|. ..-..|+|+.|.+.-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 46899999999999999999999999999999999999999999999999999999998884 45678999999998887
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
+.
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 63
No 104
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.62 E-value=1e-07 Score=92.73 Aligned_cols=82 Identities=27% Similarity=0.426 Sum_probs=75.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
....+.|+|.|||+.|++++|+++|..||.++.+.|.++ .+|.+.|.|-|.|...++|..|++.|||+.++|+.|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 334589999999999999999999999999988888887 5689999999999999999999999999999999999988
Q ss_pred ccc
Q 007792 319 SQS 321 (589)
Q Consensus 319 a~~ 321 (589)
..+
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 765
No 105
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.59 E-value=8.2e-08 Score=97.46 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=68.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
....++|||.|||+++||+.|+.-|..||.|.++.|+. .|+++| .|.|.+.++|+.|+..|+|..+.|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34567999999999999999999999999999999954 477777 8999999999999999999999999999987
Q ss_pred c
Q 007792 319 S 319 (589)
Q Consensus 319 a 319 (589)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 106
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.57 E-value=1.2e-07 Score=92.53 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=77.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
......+||+|+.+.+|.++|...|..||.|..+.|+.++.+|.++|||||+|.+.+.++.||. |+|..|.|..|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7654
No 107
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=4.7e-08 Score=92.99 Aligned_cols=72 Identities=18% Similarity=0.455 Sum_probs=66.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~ 322 (589)
..||||+||+.+.+.+|+.||..||.|..|.+.. ||+||+|.+..+|..|+..||+..|+|-.+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3689999999999999999999999999988854 79999999999999999999999999999999998753
No 108
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.53 E-value=1.4e-07 Score=101.21 Aligned_cols=83 Identities=25% Similarity=0.493 Sum_probs=74.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFK---TGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIH 315 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~---tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~ 315 (589)
.|..++|||+||++.++++.|...|+.||+|..|+|+.... ......||||.|.+..+|++|++.|+|..|.+..|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45668999999999999999999999999999999997642 233567999999999999999999999999999999
Q ss_pred EEeccc
Q 007792 316 VDFSQS 321 (589)
Q Consensus 316 V~~a~~ 321 (589)
+-|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 109
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=4e-08 Score=91.45 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=71.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
+...||||+||...++|+-|.++|-+.|+|..|.|..++. ++.+ ||||.|.++-++.-|++.|||..+-+..|.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3468999999999999999999999999999999987744 5556 9999999999999999999999999999999876
Q ss_pred cc
Q 007792 320 QS 321 (589)
Q Consensus 320 ~~ 321 (589)
..
T Consensus 85 ~G 86 (267)
T KOG4454|consen 85 CG 86 (267)
T ss_pred cC
Confidence 54
No 110
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=2.2e-07 Score=88.88 Aligned_cols=81 Identities=22% Similarity=0.482 Sum_probs=72.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc-eeCC--eEEEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA-LIDD--RRIHVD 317 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~-~i~g--r~i~V~ 317 (589)
...+||||-|...-.|++++.+|..||.|.+|.+... ..|.++|+|||.|.+.-+|+.||..|+|. .+-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 4579999999999999999999999999999999887 45889999999999999999999999995 3444 679999
Q ss_pred ecccc
Q 007792 318 FSQSV 322 (589)
Q Consensus 318 ~a~~~ 322 (589)
|+...
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 98763
No 111
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.47 E-value=5.4e-06 Score=83.29 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=77.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeE--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVV--------SAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID 310 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~--------~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~ 310 (589)
.....+|||.+||..+++.+|..+|.+||.|. .|.|.++++|+.++|-|.|.|.+...|++||..+++..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567999999999999999999999999885 3678889999999999999999999999999999999999
Q ss_pred CeEEEEEeccccc
Q 007792 311 DRRIHVDFSQSVS 323 (589)
Q Consensus 311 gr~i~V~~a~~~~ 323 (589)
|.+|+|.+|....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987544
No 112
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.44 E-value=1.2e-06 Score=81.82 Aligned_cols=84 Identities=19% Similarity=0.257 Sum_probs=68.8
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeec-CCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC---CeEEEEE
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRD-FKTGDSLNYAFIEFENRQACERAYSKMDNALID---DRRIHVD 317 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d-~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~---gr~i~V~ 317 (589)
-.||||.+||.++..-+|..+|-.|--...+.|... +.....+-+|||+|.+..+|.+|+.+|||..|+ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 479999999999999999999998866665555432 221223479999999999999999999999986 8999999
Q ss_pred eccccccc
Q 007792 318 FSQSVSKL 325 (589)
Q Consensus 318 ~a~~~~~~ 325 (589)
+|++..+.
T Consensus 114 lAKSNtK~ 121 (284)
T KOG1457|consen 114 LAKSNTKR 121 (284)
T ss_pred ehhcCccc
Confidence 99875543
No 113
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.32 E-value=3.1e-06 Score=70.80 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=70.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhcc--CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC----CeEEEE
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSR--FGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID----DRRIHV 316 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~--~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~----gr~i~V 316 (589)
+||-|.|||-..|.++|.+++.. .|..-.+.++.|..++-+.|||||.|.+.+.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998874 366777899999999999999999999999999999999998875 577888
Q ss_pred Eeccc
Q 007792 317 DFSQS 321 (589)
Q Consensus 317 ~~a~~ 321 (589)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 114
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.31 E-value=5.5e-07 Score=85.87 Aligned_cols=82 Identities=27% Similarity=0.444 Sum_probs=75.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
.+.....||.|.|.-+++.+.|-..|.+|-.....+++.++.||+++||+||.|.+..++..|+..|+|..++.++|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 34456799999999999999999999999888889999999999999999999999999999999999999999999876
Q ss_pred ec
Q 007792 318 FS 319 (589)
Q Consensus 318 ~a 319 (589)
-+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 44
No 115
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=8.9e-07 Score=90.80 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=126.7
Q ss_pred EEEEecce----eEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCC-CCCCcccccccccccc
Q 007792 3 VLIVTSLG----DIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGT-GGDSVYKFLYGEQARF 77 (589)
Q Consensus 3 v~~~T~~G----~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~-~~~~~~~~~~~~~~~~ 77 (589)
+.+.|..| -|.|+|+..-+|..++-|..+|...++++..|.+|...+++|.|+...... +|. |-.|....+..+
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs~e~~~qf 179 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWSAEGPFQF 179 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeecCCCcccC
Confidence 67789999 899999999999999999999999999999999999999999998663221 111 111111111122
Q ss_pred cCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeec
Q 007792 78 FGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIK 157 (589)
Q Consensus 78 ~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~ 157 (589)
...+++..++| ..-++.+...-....+.+|+|...+ .+.|+.+..|||.|+.|-.+++.|....++....|..++.|.
T Consensus 180 Pr~~l~~~~K~-eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 180 PRTNLNFELKH-ETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred ccccccccccc-cchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence 33456788898 5688888887767778899998887 899999999999999999999999999999888999899998
Q ss_pred ccccc
Q 007792 158 HTYIL 162 (589)
Q Consensus 158 ~~~vl 162 (589)
++.+.
T Consensus 258 ~Velg 262 (558)
T KOG0882|consen 258 HVELG 262 (558)
T ss_pred eeehh
Confidence 88764
No 116
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=1.1e-06 Score=93.50 Aligned_cols=82 Identities=20% Similarity=0.400 Sum_probs=78.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
....|||++||..+++.++.+++..||.+....++.+..+|.++||||.+|.+..-+..|+..|||..+++++|.|+.|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
..
T Consensus 368 ~g 369 (500)
T KOG0120|consen 368 VG 369 (500)
T ss_pred cc
Confidence 63
No 117
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=1.5e-06 Score=91.60 Aligned_cols=70 Identities=23% Similarity=0.401 Sum_probs=64.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIH 315 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~ 315 (589)
+..+|+|-|||..|++++|..+|+.||+|..|+.-.. ..|.+||+|-+..+|+.|+++|++..|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 5679999999999999999999999999999766443 558999999999999999999999999999998
No 118
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.12 E-value=5.2e-06 Score=87.77 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=68.3
Q ss_pred CCCCCCCCCCceEEEecCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee--
Q 007792 233 IPDADIKPPENVLFVCKLNPVTEDEDLHTIFS-RFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI-- 309 (589)
Q Consensus 233 ~~~~~~~~~~~~i~V~nL~~~~te~~L~~~F~-~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i-- 309 (589)
++...-+++.+.|||.||-.-+|..+|+.+++ .+|.|..+ ++|+ .+..|||.|.+.++|.+.+.+|||..|
T Consensus 435 vpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 435 VPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCC
Confidence 34444566789999999999999999999999 56666666 3342 567999999999999999999999877
Q ss_pred -CCeEEEEEeccc
Q 007792 310 -DDRRIHVDFSQS 321 (589)
Q Consensus 310 -~gr~i~V~~a~~ 321 (589)
+++.|.|.|...
T Consensus 509 sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 509 SNPKHLIADFVRA 521 (718)
T ss_pred CCCceeEeeecch
Confidence 578999999864
No 119
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.08 E-value=2.6e-06 Score=84.34 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=70.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFG--TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIH 315 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G--~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~ 315 (589)
.......+|||||-|++|+++|.+.+...| .+.++++..+..+|+++|||+|...+..++.+.++.|...+|+|..-.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 344567999999999999999999998777 466788888999999999999999999999999999999999997766
Q ss_pred EEe
Q 007792 316 VDF 318 (589)
Q Consensus 316 V~~ 318 (589)
|--
T Consensus 156 V~~ 158 (498)
T KOG4849|consen 156 VLS 158 (498)
T ss_pred eec
Confidence 643
No 120
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.95 E-value=2.8e-05 Score=78.96 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=69.5
Q ss_pred CceEEEecCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 242 ENVLFVCKLNP-VTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 242 ~~~i~V~nL~~-~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
+..|.|.||.. .+|.+-|..+|+-||.|..|+|..++. -.|+|.|.+...|+.|+..|+|..|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57899999966 489999999999999999999998754 589999999999999999999999999999999998
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 63
No 121
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.94 E-value=7e-06 Score=76.88 Aligned_cols=65 Identities=22% Similarity=0.448 Sum_probs=55.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI 309 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i 309 (589)
...||||.||.+++||++|+.+|+.|--..-++|-. . ...+.|||+|++.+.|..|+..|+|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~--~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--R--GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--C--CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 457999999999999999999999997766666633 1 2347999999999999999999999776
No 122
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.88 E-value=5.7e-06 Score=87.14 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=74.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
..+||+-.|+..+++-+|.+||+.+|+|..|.|+.|..++.++|.|||+|.+.+++..|| .|.|..+.|-+|.|+....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 468888889989999999999999999999999999999999999999999999999999 8999999999999998765
No 123
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.83 E-value=5.3e-05 Score=71.78 Aligned_cols=79 Identities=23% Similarity=0.451 Sum_probs=70.3
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC-CeEEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID-DRRIH 315 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~-gr~i~ 315 (589)
...+|..++|+.|||..++.+.|..+|.+|.-...+.++... .+.|||+|.+...|..|...|+|..|- ...|.
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 346788999999999999999999999999999999998753 389999999999999999999999886 88888
Q ss_pred EEecc
Q 007792 316 VDFSQ 320 (589)
Q Consensus 316 V~~a~ 320 (589)
|.++.
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 88774
No 124
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.76 E-value=7.8e-05 Score=59.51 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=48.1
Q ss_pred ceEEEecCCCCCCHHH----HHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 243 NVLFVCKLNPVTEDED----LHTIFSRFG-TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~----L~~~F~~~G-~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
+.|||.|||.+..... |.+++..|| .|..|. .+-|+|.|.+++.|..|.+.|+|..+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999988765 456677776 565541 2689999999999999999999999999999999
Q ss_pred eccc
Q 007792 318 FSQS 321 (589)
Q Consensus 318 ~a~~ 321 (589)
|...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9743
No 125
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.74 E-value=9.3e-05 Score=77.24 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=68.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
...|-+.+|||++|+++|..||+.|+ |..+.+.+ .+|++.|-|||+|.++++++.||+ .+-..+..+-|.|--+.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 45677889999999999999999995 77765554 679999999999999999999995 587888889999988876
Q ss_pred ccccc
Q 007792 322 VSKLW 326 (589)
Q Consensus 322 ~~~~~ 326 (589)
....|
T Consensus 86 ~e~d~ 90 (510)
T KOG4211|consen 86 AEADW 90 (510)
T ss_pred ccccc
Confidence 55544
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.70 E-value=4.1e-05 Score=77.46 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=75.1
Q ss_pred CCceEE-EecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 241 PENVLF-VCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 241 ~~~~i~-V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
+..++| |++|+..+++++|...|..+|.|..+.+..+..++.++|||||.|.....+..|+.. +...|.+.++.|...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 999999999999999999999999999999999999999999999999999999976 788999999999998
Q ss_pred ccccc
Q 007792 320 QSVSK 324 (589)
Q Consensus 320 ~~~~~ 324 (589)
.+...
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 87544
No 127
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.64 E-value=0.00029 Score=69.89 Aligned_cols=80 Identities=19% Similarity=0.518 Sum_probs=61.6
Q ss_pred CceEEEecCCCCCCHHH----H--HHHhccCCCeEEEEEeecCCC-CCcccE--EEEEEcCHHHHHHHHHhcCCceeCCe
Q 007792 242 ENVLFVCKLNPVTEDED----L--HTIFSRFGTVVSAEIIRDFKT-GDSLNY--AFIEFENRQACERAYSKMDNALIDDR 312 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~----L--~~~F~~~G~v~~~~i~~d~~t-g~~~g~--aFV~f~~~~~a~~A~~~l~g~~i~gr 312 (589)
.+-+||-+||+.+..++ | .++|++||.|..|.|-.-..+ ....+. .||+|.+.++|..||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46789999999877665 2 479999999988766432111 111222 49999999999999999999999999
Q ss_pred EEEEEeccc
Q 007792 313 RIHVDFSQS 321 (589)
Q Consensus 313 ~i~V~~a~~ 321 (589)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988653
No 128
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.55 E-value=0.00015 Score=61.97 Aligned_cols=70 Identities=23% Similarity=0.430 Sum_probs=45.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC-----ceeCCeEEEEE
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDN-----ALIDDRRIHVD 317 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g-----~~i~gr~i~V~ 317 (589)
..|+|.+++..++.++|+.+|++||.|.+|.+.... .-|||-|.+.+.|+.|+..+.- ..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578999999999999999999999999999886532 4899999999999999986643 46677776666
Q ss_pred e
Q 007792 318 F 318 (589)
Q Consensus 318 ~ 318 (589)
+
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 5
No 129
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.47 E-value=0.00044 Score=72.29 Aligned_cols=78 Identities=24% Similarity=0.289 Sum_probs=63.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVS-AEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~-~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
+..+|-+.+||+.||+++|.+||+..-.|.. +.++.+ ..+.+.|-|||.|++++.|+.||. -|...|+-+-|.|--|
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 4568889999999999999999997755544 455565 446788999999999999999995 4777888888888765
Q ss_pred c
Q 007792 320 Q 320 (589)
Q Consensus 320 ~ 320 (589)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 130
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.46 E-value=7e-05 Score=71.55 Aligned_cols=67 Identities=31% Similarity=0.465 Sum_probs=60.3
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
.+.|+|-||+..+.+++|...|.++|++....+ ..++|||+|+.+++|..||..|+|..+.|+.|.|
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 467889999999999999999999999854443 3479999999999999999999999999999999
No 131
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.43 E-value=7.4e-05 Score=71.72 Aligned_cols=73 Identities=18% Similarity=0.402 Sum_probs=62.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCC--------CCccc----EEEEEEcCHHHHHHHHHhcCCce
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKT--------GDSLN----YAFIEFENRQACERAYSKMDNAL 308 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~t--------g~~~g----~aFV~f~~~~~a~~A~~~l~g~~ 308 (589)
..-.|||++||+.+...-|+++|++||.|-.|.|.....+ |.+.. -|+|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3569999999999999999999999999999988765443 33322 47899999999999999999999
Q ss_pred eCCeE
Q 007792 309 IDDRR 313 (589)
Q Consensus 309 i~gr~ 313 (589)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99976
No 132
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.37 E-value=0.00083 Score=60.00 Aligned_cols=76 Identities=21% Similarity=0.471 Sum_probs=54.8
Q ss_pred CCCCCCceEEEecCCC------CCCH---HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc
Q 007792 237 DIKPPENVLFVCKLNP------VTED---EDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA 307 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~------~~te---~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~ 307 (589)
...||..||.|.=+.+ ...+ .+|.+.|..||.|.-++++.+ .-+|+|.+-++|.+|+ .|+|.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~ 92 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGI 92 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCS
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCc
Confidence 3467778888876661 2222 367788999999998888763 6799999999999999 68999
Q ss_pred eeCCeEEEEEeccc
Q 007792 308 LIDDRRIHVDFSQS 321 (589)
Q Consensus 308 ~i~gr~i~V~~a~~ 321 (589)
+|+|+.|+|....+
T Consensus 93 ~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 93 QVNGRTLKIRLKTP 106 (146)
T ss_dssp EETTEEEEEEE---
T ss_pred EECCEEEEEEeCCc
Confidence 99999999999765
No 133
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00041 Score=73.40 Aligned_cols=77 Identities=21% Similarity=0.350 Sum_probs=63.5
Q ss_pred CceEEEecCCCCCCH------HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC-CeEE
Q 007792 242 ENVLFVCKLNPVTED------EDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID-DRRI 314 (589)
Q Consensus 242 ~~~i~V~nL~~~~te------~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~-gr~i 314 (589)
.+.|+|.|+|..-.. .-|..+|+++|+|+.+.++.+..+| .+||.|++|.+..+|+.|++.|||..|+ .+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 478999999875332 3456889999999999999886655 9999999999999999999999998875 6777
Q ss_pred EEEec
Q 007792 315 HVDFS 319 (589)
Q Consensus 315 ~V~~a 319 (589)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77643
No 134
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.15 E-value=0.0009 Score=68.32 Aligned_cols=79 Identities=24% Similarity=0.393 Sum_probs=65.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCe-EEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDR-RIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr-~i~V~ 317 (589)
-||..+|++.|+|+.++|++|+..|..-|-.+...... ++.+-+|++.+++.++|..|+..|+...+++. .|+|.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 36778999999999999999999999888765443322 23446999999999999999999999888754 89999
Q ss_pred eccc
Q 007792 318 FSQS 321 (589)
Q Consensus 318 ~a~~ 321 (589)
|+++
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9875
No 135
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.04 E-value=0.0045 Score=62.21 Aligned_cols=79 Identities=15% Similarity=0.288 Sum_probs=63.3
Q ss_pred CCCCceEEEecCCC----CCC-------HHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc
Q 007792 239 KPPENVLFVCKLNP----VTE-------DEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA 307 (589)
Q Consensus 239 ~~~~~~i~V~nL~~----~~t-------e~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~ 307 (589)
.....+|.|.||-. ..+ .++|.+-..+||.|..|.|.-. .+.|.+-|.|.+.++|..||+.|+|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCe
Confidence 34567899999832 233 2456667889999999987532 36699999999999999999999999
Q ss_pred eeCCeEEEEEeccc
Q 007792 308 LIDDRRIHVDFSQS 321 (589)
Q Consensus 308 ~i~gr~i~V~~a~~ 321 (589)
.|+|+.|...+...
T Consensus 338 ~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 338 WFDGRQLTASIWDG 351 (382)
T ss_pred eecceEEEEEEeCC
Confidence 99999999887654
No 136
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.95 E-value=0.00031 Score=67.81 Aligned_cols=64 Identities=19% Similarity=0.429 Sum_probs=54.1
Q ss_pred HHHHHHhc-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 257 EDLHTIFS-RFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 257 ~~L~~~F~-~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
++|...|+ +||+|..+.|..+ ..-...|.+||.|...++|++|+..||+-.|.|++|..+++.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555566 9999999987665 3344679999999999999999999999999999999999854
No 137
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.0018 Score=68.42 Aligned_cols=62 Identities=31% Similarity=0.326 Sum_probs=58.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFS-RFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYS 302 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~-~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~ 302 (589)
|..|||||+||--++.++|..+|. -||.|..+.|-.|++-+-++|-|-|+|.+..+-.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 678999999999999999999999 89999999999998888899999999999999999996
No 138
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.90 E-value=0.0054 Score=62.05 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=70.6
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 239 KPPENVLFVCKLNPV-TEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~-~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
..+...+.|-+|... ++-+.|..+|-.||.|..|++++.+. |-|.|++.+..+.+.|+..||+..+-|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 556789999999775 67788999999999999999998643 799999999999999999999999999999999
Q ss_pred ecccc
Q 007792 318 FSQSV 322 (589)
Q Consensus 318 ~a~~~ 322 (589)
+++..
T Consensus 359 ~SkQ~ 363 (494)
T KOG1456|consen 359 VSKQN 363 (494)
T ss_pred ecccc
Confidence 99863
No 139
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.89 E-value=0.0051 Score=62.24 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=65.6
Q ss_pred CCCCceEEEecC--CCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee--CCeEE
Q 007792 239 KPPENVLFVCKL--NPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI--DDRRI 314 (589)
Q Consensus 239 ~~~~~~i~V~nL--~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i--~gr~i 314 (589)
..+++.|.+.=| -+.+|.+-|.++....|+|..|.|... +| -.|.|+|++.+.|++|...|||..| +-.+|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 446677776655 456899999999999999999988763 33 4799999999999999999999876 34789
Q ss_pred EEEeccccc
Q 007792 315 HVDFSQSVS 323 (589)
Q Consensus 315 ~V~~a~~~~ 323 (589)
+|+||+|..
T Consensus 192 KIeyAkP~r 200 (494)
T KOG1456|consen 192 KIEYAKPTR 200 (494)
T ss_pred EEEecCcce
Confidence 999999843
No 140
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.89 E-value=0.0026 Score=68.28 Aligned_cols=64 Identities=25% Similarity=0.458 Sum_probs=53.4
Q ss_pred HHHHHHhccCCCeEEEEEeecC---CCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 257 EDLHTIFSRFGTVVSAEIIRDF---KTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 257 ~~L~~~F~~~G~v~~~~i~~d~---~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
++|+..+++||.|..|.|..+. ...-..|..||+|.+.++|+.|+++|+|.+|.|+.|...|..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 3455567799999999998762 223356889999999999999999999999999999998864
No 141
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.73 E-value=0.0018 Score=66.65 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=56.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeec---CCC--CCc--------ccEEEEEEcCHHHHHHHHHhcCC
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRD---FKT--GDS--------LNYAFIEFENRQACERAYSKMDN 306 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d---~~t--g~~--------~g~aFV~f~~~~~a~~A~~~l~g 306 (589)
.+..+|.+.|||.+-.-+.|.+||+.||.|+.|+|+.. +.. +.+ +-+|||+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 57889999999999888999999999999999999876 222 222 35799999999999999988765
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.72 E-value=0.0012 Score=67.63 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=59.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc-eeCCeEEEEEeccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA-LIDDRRIHVDFSQS 321 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~-~i~gr~i~V~~a~~ 321 (589)
+.+||+||.+.++..+|..+|...-....-.++. ..|||||.+.+...|.+|++.|+|. ++.|+++.|.++-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4789999999999999999998542111222222 1289999999999999999999994 68999999999876
Q ss_pred cc
Q 007792 322 VS 323 (589)
Q Consensus 322 ~~ 323 (589)
+.
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 43
No 143
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.67 E-value=0.0051 Score=66.82 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=65.0
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeE-EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVV-SAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~-~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
+.|-+-|+|+.++-++|.+||..|-.+- +|.+-.+ ..|+..|-|.|.|++.++|..|...|++..|..+.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788899999999999999999996554 4444444 6789999999999999999999999999999999998864
No 144
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.66 E-value=0.0043 Score=46.00 Aligned_cols=52 Identities=21% Similarity=0.470 Sum_probs=42.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAY 301 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~ 301 (589)
+.|-|.+.++...+ .|...|.+||+|..+.+.. ...+.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 56788899887764 4556888999999988852 2359999999999999985
No 145
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.53 E-value=0.0071 Score=55.51 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=60.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC--CeEEEEEe
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID--DRRIHVDF 318 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~--gr~i~V~~ 318 (589)
....|.|.+||+..++++|+...-+.|.|....+..| |++.|+|...++++-||..|....+. |-...+.+
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 3468999999999999999999999999999999887 79999999999999999999886654 44444333
No 146
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.49 E-value=0.016 Score=48.88 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=51.9
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEe-ecC------CCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCe-E
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEII-RDF------KTGDSLNYAFIEFENRQACERAYSKMDNALIDDR-R 313 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~-~d~------~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr-~ 313 (589)
.+.|.|-+.|+..+ ..|...|++||.|.+..-+ .+. ..........|.|.+..+|.+|| ..||..|.|. .
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 45688889998854 7788999999999876400 000 00112358999999999999999 4699999885 5
Q ss_pred EEEEeccc
Q 007792 314 IHVDFSQS 321 (589)
Q Consensus 314 i~V~~a~~ 321 (589)
+-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 56777754
No 147
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.37 E-value=0.0069 Score=61.49 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=66.3
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCC-eEE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGT-VVS--AEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~-v~~--~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+|-+.+||+.++.++|..||..|.. |.. |.|+.+ ..|.+.|-|||+|.+.+.|.+|....+.+....+-|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 468999999999999999999998864 333 777777 4588999999999999999999988888777789898876
Q ss_pred cc
Q 007792 319 SQ 320 (589)
Q Consensus 319 a~ 320 (589)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 54
No 148
>PRK00969 hypothetical protein; Provisional
Probab=96.32 E-value=0.024 Score=60.42 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=77.4
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCc
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDE 81 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e 81 (589)
...|.|+.|.|+|+|. ....++.-|+..++. |.|..++...+.- +.+|-+..+ |+..
T Consensus 52 ~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~~-vAfGp~~s~------------------l~p~ 108 (508)
T PRK00969 52 KYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRSA-VAFGPFESD------------------LEPS 108 (508)
T ss_pred eEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccccc-eeEcccccC------------------cccc
Confidence 4578999999999999 566777888877765 6788887766544 333322110 1101
Q ss_pred cccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCC-CcceEEEEecCHHHHHHHhhC
Q 007792 82 IRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDE-KHTIFGEVAEGLETLSRINES 142 (589)
Q Consensus 82 ~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~-~~~vFG~Vv~G~~vl~~i~~~ 142 (589)
..-....++-|.|.-+|-+...+.+.|+..+++....- .--|||+||.|..+|+.+...
T Consensus 109 --~~~~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~ 168 (508)
T PRK00969 109 --REEYEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDG 168 (508)
T ss_pred --cCcceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCC
Confidence 01111257888898888877788888887764222111 127999999999999999654
No 149
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.012 Score=62.43 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=46.3
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEee--cC-CCCCccc---EEEEEEcCHHHHHHHHHh
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIR--DF-KTGDSLN---YAFIEFENRQACERAYSK 303 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~--d~-~tg~~~g---~aFV~f~~~~~a~~A~~~ 303 (589)
...||||+||+.++|+.|...|..||.+. |.+.. .. .--.++| |+|+.|+++.++..-|.+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 46999999999999999999999999865 33331 11 1112456 999999999888776654
No 150
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.19 E-value=0.035 Score=59.00 Aligned_cols=116 Identities=14% Similarity=0.197 Sum_probs=78.2
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCc
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDE 81 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e 81 (589)
...|.|+.|.|+|+|-. ...+++-|++.++. |-|..++...+.- +.+|-+..+ |+..
T Consensus 48 ~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~~-vAfGp~~sd------------------l~p~ 104 (503)
T TIGR03268 48 EYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQE-VAFGPFPSD------------------LEPS 104 (503)
T ss_pred eEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecchhh-eeeCcccCC------------------cccc
Confidence 45789999999999993 67778888877765 6777777665543 333322110 1100
Q ss_pred cccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCC--CCcceEEEEecCHHHHHHHhhC
Q 007792 82 IRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLD--EKHTIFGEVAEGLETLSRINES 142 (589)
Q Consensus 82 ~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld--~~~~vFG~Vv~G~~vl~~i~~~ 142 (589)
..-....++-|.+.-+|-+...+.+.|+..+++.... ...-|||+||.|..||++|...
T Consensus 105 --~~~~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~ 165 (503)
T TIGR03268 105 --REPSEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDG 165 (503)
T ss_pred --CCcceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCC
Confidence 0111135788899888888888888888877532221 1467999999999999999654
No 151
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.14 E-value=0.0052 Score=68.79 Aligned_cols=79 Identities=27% Similarity=0.424 Sum_probs=68.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEE
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD--RRIHVD 317 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g--r~i~V~ 317 (589)
.+.+.+||++|..++....|..+|..||.|..|.+-. .--||+|.|++...|+.|+..|-|+.|+| +.|.|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 3567899999999999999999999999999877633 22599999999999999999999999986 779999
Q ss_pred ecccccc
Q 007792 318 FSQSVSK 324 (589)
Q Consensus 318 ~a~~~~~ 324 (589)
|+.....
T Consensus 527 la~~~~~ 533 (975)
T KOG0112|consen 527 LASPPGA 533 (975)
T ss_pred cccCCCC
Confidence 9986433
No 152
>PRK00969 hypothetical protein; Provisional
Probab=96.12 E-value=0.016 Score=61.69 Aligned_cols=96 Identities=24% Similarity=0.340 Sum_probs=62.2
Q ss_pred EEEEecCCCChhHHHHHHHHHhcCccC----CceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCccccCCC
Q 007792 12 IVVDLFVDKCPLTTKNFLKLCKIKYYN----GCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEIRVDLK 87 (589)
Q Consensus 12 i~ieL~~~~aP~~~~nF~~l~~~~~Y~----g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 87 (589)
+.|+|.+ .||.+|++|+.+.+.|.+. -.+|-. ...+|| ..+|.|. +.
T Consensus 206 ~eve~~~-~~p~s~EH~la~~~~G~f~Vd~~tstfI~---d~~L~g----------------------~~~p~En---~~ 256 (508)
T PRK00969 206 VEVELDP-GAPKSVEHFLALLEDGTFEVDFETSTFIA---DDRLQG----------------------LKIPEEN---FE 256 (508)
T ss_pred EEEEEcC-CCCchHHHHHHHHhCCeEEEeeeecceEe---eccccC----------------------ccCCccc---cC
Confidence 5677775 5999999999999987532 122211 111111 2344442 22
Q ss_pred CCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHh
Q 007792 88 HAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRIN 140 (589)
Q Consensus 88 ~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~ 140 (589)
.-..|+|.+-+.|.+ ..-.||...+-.+. -.|+|+|+|+.||++++--.
T Consensus 257 ~R~~GtVTVRt~G~g--~G~vYIyredr~ss--~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 257 PRRRGTVTVRTAGVG--VGKVYIYREDRPSS--LSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred ccccceEEEEeeccC--ceeEEEECCCCCCC--ccceeEEEEecceeeeeccc
Confidence 235799999998754 34688888763333 45999999999999986543
No 153
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.11 E-value=0.033 Score=59.23 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=64.0
Q ss_pred ceeEEEEecCCCChhHHHHHHHHHhcCcc--CCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCccccCC
Q 007792 9 LGDIVVDLFVDKCPLTTKNFLKLCKIKYY--NGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEIRVDL 86 (589)
Q Consensus 9 ~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y--~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 86 (589)
---|.|+||.+.||.||..|..+.-.... --+.+|-..++.++.-|++. +. +.+-.|..+.-
T Consensus 374 ~~vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~~~---------~~-------k~LiPEN~P~~ 437 (503)
T TIGR03268 374 DKVIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGNKE---------LA-------KGLIPENTPED 437 (503)
T ss_pred HhEEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccCch---------hc-------cccCCCCCCCC
Confidence 34579999999999999999998754321 22355555555444422221 10 11222222222
Q ss_pred CCCCCceEEEeccCCCCCcceEEEEeC------CCCCCCCCCcceEEEEecCHHHHHHHhhC
Q 007792 87 KHAKTGTVAMASAGENLNASQFYMTLR------DNLDYLDEKHTIFGEVAEGLETLSRINES 142 (589)
Q Consensus 87 ~~~~~G~vs~a~~g~~~~~sqFfI~l~------~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~ 142 (589)
+ ..+|.|+|.|...-. -...-|-|. |....|++.+. +|+|+++++.|.+|...
T Consensus 438 ~-V~ag~IgvTN~a~k~-~G~IGVRl~d~defGPTGE~F~gTNI-iG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 438 K-VEAGVIGVTNQACKH-VGMIGVRLEDSDEFGPTGEPFSGTNI-IGRVVEGMERLKGLKEG 496 (503)
T ss_pred c-cccceEeeechhhhc-CceEEEEccCCcccCCCCCCccCcce-EEEecCChhHhcccccC
Confidence 2 246888876642110 011222232 22344666554 59999999999888653
No 154
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.97 E-value=0.0048 Score=68.77 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=73.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
...|||.|+|+..|.+.|+.+|..+|.++.+.++.. ..|+++|.|||.|.++.+|..++..+....+.-..+.|.+++|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 458999999999999999999999999999998877 4699999999999999999999988888888888999999887
Q ss_pred c
Q 007792 322 V 322 (589)
Q Consensus 322 ~ 322 (589)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 155
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.013 Score=59.76 Aligned_cols=97 Identities=23% Similarity=0.364 Sum_probs=63.6
Q ss_pred eEEEEecCCCChhHHHHHHHHHhcCc----cCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCccccCC
Q 007792 11 DIVVDLFVDKCPLTTKNFLKLCKIKY----YNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEIRVDL 86 (589)
Q Consensus 11 ~i~ieL~~~~aP~~~~nF~~l~~~~~----Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 86 (589)
.+.|+|-++ +|.+|++|++|.+.|. |.-.+|--..+ +| ...++.| ++.+
T Consensus 204 y~eve~s~n-sP~saEH~lalmedG~lri~~~tntfis~~~---lq----------------------~~~~~~e-n~d~ 256 (512)
T COG4070 204 YFEVELSRN-SPKSAEHFLALMEDGTLRIDVTTNTFISDDT---LQ----------------------EEKVPEE-NFDL 256 (512)
T ss_pred EEEEEeCCC-CchhHHHHHHHhhcceEEEEEeccceeeccc---cc----------------------cccCChh-hhhh
Confidence 357788764 9999999999998764 22222211111 11 1334545 3444
Q ss_pred CCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHh
Q 007792 87 KHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRIN 140 (589)
Q Consensus 87 ~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~ 140 (589)
. .+|.|.+-|.|-+ ...-||.-.+-.+.| .|+|.|+|++||++|+--.
T Consensus 257 R--erG~iTvRn~Gvg--eGrvYIyRedR~ss~--sHnvVGrV~eGiELid~a~ 304 (512)
T COG4070 257 R--ERGAITVRNVGVG--EGRVYIYREDRPSSL--SHNVVGRVIEGIELIDLAE 304 (512)
T ss_pred h--hcceEEEEeeecc--cceEEEEecCCCCcc--ccceeeeeecceEEEEecc
Confidence 4 4799999987743 346788776644444 4899999999999887543
No 156
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.66 E-value=0.031 Score=54.95 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=51.5
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCc-ccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 257 EDLHTIFSRFGTVVSAEIIRDFKTGDS-LNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 257 ~~L~~~F~~~G~v~~~~i~~d~~tg~~-~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
.++.+.+.+||.|..|-|...+.-..- ---.||+|+..++|.+|+-.|||..|+|+.+...|.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 567788899999999877665321111 2358999999999999999999999999999988765
No 157
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=95.19 E-value=0.099 Score=47.05 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=27.6
Q ss_pred EEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecC
Q 007792 4 LIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKD 48 (589)
Q Consensus 4 ~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~ 48 (589)
.|...--.++.+|+.+.||.||+.|.++. =|.+..+|-...+
T Consensus 2 ~~~~~g~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG 43 (147)
T PF12903_consen 2 TLTKRGVSFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSG 43 (147)
T ss_dssp EETTTTEEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSS
T ss_pred eEecCCeEEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEEC
Confidence 34445557899999999999999999988 3555555554444
No 158
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.13 E-value=0.011 Score=64.21 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=66.8
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
...+|..+|||+||...+..+-+..++..||-|..+..+. |||+.|....-+..|+..|+-..++|..|.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3456788999999999999999999999999998876644 9999999999999999999999999999988
Q ss_pred Eecc
Q 007792 317 DFSQ 320 (589)
Q Consensus 317 ~~a~ 320 (589)
....
T Consensus 106 ~~d~ 109 (668)
T KOG2253|consen 106 NVDE 109 (668)
T ss_pred cchh
Confidence 8753
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.93 E-value=0.029 Score=54.40 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=63.0
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC----ceeCCeEEEEEe
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDN----ALIDDRRIHVDF 318 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g----~~i~gr~i~V~~ 318 (589)
..|||.||+..+..+.|...|..||+|....++.| ..+++.+-++|+|...-.|..|+..++- ..+.+.+.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 79999999999999999999999999998777776 5578889999999999999999987732 234566666654
Q ss_pred c
Q 007792 319 S 319 (589)
Q Consensus 319 a 319 (589)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 160
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.77 E-value=0.015 Score=58.57 Aligned_cols=80 Identities=18% Similarity=0.352 Sum_probs=62.1
Q ss_pred CceEEEecCCCCCCHHHHH---HHhccCCCeEEEEEeecCC--CC-CcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 007792 242 ENVLFVCKLNPVTEDEDLH---TIFSRFGTVVSAEIIRDFK--TG-DSLNYAFIEFENRQACERAYSKMDNALIDDRRIH 315 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~---~~F~~~G~v~~~~i~~d~~--tg-~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~ 315 (589)
.+-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+ ...+-++|+|...++|..||...+|+.++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3678999998886655543 6899999999888776542 11 1223489999999999999999999999999988
Q ss_pred EEeccc
Q 007792 316 VDFSQS 321 (589)
Q Consensus 316 V~~a~~ 321 (589)
..+...
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 777654
No 161
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.72 E-value=0.14 Score=41.14 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=41.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMD 305 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~ 305 (589)
...||+ +|..+...+|.++|+.||.|. |.++.+ .-|||.....+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 455565 999999999999999999864 666665 479999999999999998775
No 162
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.67 E-value=0.0025 Score=70.88 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=58.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI 309 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i 309 (589)
.++||.||++.+.+.+|...|..+|.|..++|.....++..+|+|||+|...+.+.+||....+..+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 4899999999999999999999999998888876677899999999999999999999965444433
No 163
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.11 Score=53.30 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.3
Q ss_pred eEEEEecCCCChhHHHHHHHHHhc
Q 007792 11 DIVVDLFVDKCPLTTKNFLKLCKI 34 (589)
Q Consensus 11 ~i~ieL~~~~aP~~~~nF~~l~~~ 34 (589)
-|.||||.+.||.+|..|..+...
T Consensus 377 iieIELyed~APrSv~yFRr~t~l 400 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGL 400 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhccc
Confidence 379999999999999999988753
No 164
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.51 E-value=0.012 Score=65.90 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=68.5
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
+....+.+||+|||+..+++.+|+..|..+|.|..|.|-..+. +.-..||||.|.+...+..|+..|.+..|.--.+.+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 3344567999999999999999999999999999998866532 334579999999999999999999998887656666
Q ss_pred Eecc
Q 007792 317 DFSQ 320 (589)
Q Consensus 317 ~~a~ 320 (589)
-+.+
T Consensus 446 glG~ 449 (975)
T KOG0112|consen 446 GLGQ 449 (975)
T ss_pred cccc
Confidence 6654
No 165
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.10 E-value=0.26 Score=37.59 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=44.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhccC---CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRF---GTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKM 304 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~---G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l 304 (589)
...|+|.++.. ++.++|+.+|..| .....|.++-|. -|-|.|.+...|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 46899999854 6778999999988 235678888873 5789999999999999765
No 166
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.61 E-value=0.26 Score=43.71 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=56.6
Q ss_pred CCCCceEEEecCCCCCC----HHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q 007792 239 KPPENVLFVCKLNPVTE----DEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRI 314 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~t----e~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i 314 (589)
.||-.||.|.=|..++. -..|...++.||+|.+|.++. +.-|.|.|.+..+|-.|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 55667888876655543 234556678999999998754 24799999999999999998876 5678888
Q ss_pred EEEecc
Q 007792 315 HVDFSQ 320 (589)
Q Consensus 315 ~V~~a~ 320 (589)
.+.|-+
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888764
No 167
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.41 E-value=0.32 Score=49.79 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=54.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhccC----CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRF----GTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~----G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
.-.|-+.+||+++|+.++.+||..- |-+..|-++.. ..|+..|-|||.|..+++|+.||.. |-..|+-+-|.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 4567778999999999999999732 23345555553 4688899999999999999999964 444455444544
No 168
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.33 E-value=0.25 Score=46.54 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcc-CCCe---EEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHhcCCceeCC---
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSR-FGTV---VSAEIIRDFKT--GDSLNYAFIEFENRQACERAYSKMDNALIDD--- 311 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~-~G~v---~~~~i~~d~~t--g~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g--- 311 (589)
....|.|.+||+.+|++++.+.+.. ++.- ..+.......+ .....-|||.|.+.+++...+..++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3568999999999999998887776 6655 33332222221 1124679999999999999999999977643
Q ss_pred --eEEEEEeccc
Q 007792 312 --RRIHVDFSQS 321 (589)
Q Consensus 312 --r~i~V~~a~~ 321 (589)
....|++|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 4456777654
No 169
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.14 E-value=0.15 Score=54.78 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=67.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC----CeEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFS-RFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID----DRRIH 315 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~-~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~----gr~i~ 315 (589)
+.+++-|.|++-..|-..|...-. ..|.--.+.++.|-.+....|||||.|.+.+++..+.+++||+.+. .+.+.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 457888889988877777665543 3566667888888778888999999999999999999999997653 57778
Q ss_pred EEecccccccc
Q 007792 316 VDFSQSVSKLW 326 (589)
Q Consensus 316 V~~a~~~~~~~ 326 (589)
|.||.-..+.|
T Consensus 467 itYArIQGk~~ 477 (549)
T KOG4660|consen 467 ITYARIQGKEA 477 (549)
T ss_pred eehhhhhchHH
Confidence 88887655543
No 170
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.05 E-value=0.31 Score=38.76 Aligned_cols=66 Identities=15% Similarity=0.359 Sum_probs=39.3
Q ss_pred eEEEecC--CCCCCHHHHHHHhccCC-----CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 244 VLFVCKL--NPVTEDEDLHTIFSRFG-----TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 244 ~i~V~nL--~~~~te~~L~~~F~~~G-----~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
++|| |+ -..++..+|..+|...+ .|-.+.|.. .|+||+... +.|..++..|++..+.|++|.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----E
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEE
Confidence 3455 33 34578889998887664 345677754 499999974 5889999999999999999999
Q ss_pred Eec
Q 007792 317 DFS 319 (589)
Q Consensus 317 ~~a 319 (589)
+.|
T Consensus 72 e~A 74 (74)
T PF03880_consen 72 ERA 74 (74)
T ss_dssp EE-
T ss_pred EEC
Confidence 875
No 171
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.04 E-value=0.068 Score=58.46 Aligned_cols=79 Identities=24% Similarity=0.116 Sum_probs=65.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVS-AEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~-~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
....|||..||..+++..+..+|...-.|++ |.|... -+++..+-|||+|...+++..|+..-+.+.++-+.|.|.-.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 3569999999999999999999998877776 655544 46778899999999999999998766667777888888754
Q ss_pred c
Q 007792 320 Q 320 (589)
Q Consensus 320 ~ 320 (589)
.
T Consensus 512 ~ 512 (944)
T KOG4307|consen 512 A 512 (944)
T ss_pred h
Confidence 3
No 172
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.57 E-value=0.35 Score=45.73 Aligned_cols=63 Identities=21% Similarity=0.373 Sum_probs=46.8
Q ss_pred CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC--CceeCCeEEEEEeccccc
Q 007792 255 EDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMD--NALIDDRRIHVDFSQSVS 323 (589)
Q Consensus 255 te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~--g~~i~gr~i~V~~a~~~~ 323 (589)
....|+.+|..|+.+..+.+.. +-+-..|.|.+.+.|..|...|+ +..|.|..|+|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 3478999999999998877665 34678999999999999999999 999999999999996543
No 173
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.53 E-value=0.23 Score=53.20 Aligned_cols=71 Identities=17% Similarity=0.329 Sum_probs=58.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhc--cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC--ceeCCeEEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFS--RFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDN--ALIDDRRIHV 316 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~--~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g--~~i~gr~i~V 316 (589)
..++|.|.-||..+-.++|+.+|. .|-+++.|.+..+ .-=||+|++..+|+.|++.|.. ++|-|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 457888999999999999999997 5888999998775 2468999999999999988764 5677877765
Q ss_pred Ee
Q 007792 317 DF 318 (589)
Q Consensus 317 ~~ 318 (589)
.+
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 44
No 174
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=92.21 E-value=0.093 Score=52.48 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=8.8
Q ss_pred CCCHHHHHHHhccC
Q 007792 253 VTEDEDLHTIFSRF 266 (589)
Q Consensus 253 ~~te~~L~~~F~~~ 266 (589)
.....+|...|+.|
T Consensus 168 tqpp~dLw~WyEpy 181 (453)
T KOG2888|consen 168 TQPPADLWDWYEPY 181 (453)
T ss_pred cCChhHHHHHhhhh
Confidence 34456677777766
No 175
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.14 E-value=1.5 Score=37.84 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=53.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC---eEEEEE
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFG-TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD---RRIHVD 317 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G-~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g---r~i~V~ 317 (589)
...+.+...|+.++-++|..+.+.+- .|..++|+.+.. .++-.+++.|.++..|......+||+.+.. ..++|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 34455555666666677766666554 466888988633 256789999999999999999999987753 445544
Q ss_pred ec
Q 007792 318 FS 319 (589)
Q Consensus 318 ~a 319 (589)
|-
T Consensus 91 fV 92 (110)
T PF07576_consen 91 FV 92 (110)
T ss_pred EE
Confidence 43
No 176
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=91.81 E-value=0.85 Score=40.02 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=58.1
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHh----cCccCCceEEEeecCcccccCCCCCCCCCCCCccccccccccc
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCK----IKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQAR 76 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~----~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~ 76 (589)
|.|.|......|.++|+.. .|+..|++++= -..|.+ -+|--.|-
T Consensus 1 mkI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~-E~y~~~p~---------------------------- 48 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGN-EKYFSLPL---------------------------- 48 (120)
T ss_dssp EEEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTT-EEEEE-S-----------------------------
T ss_pred CeEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCc-eEEEeCCC----------------------------
Confidence 7899999999999999976 88999988772 122422 22211121
Q ss_pred ccC-CccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCC-------CCCCCcceEEEEecCHHHHHHHhh
Q 007792 77 FFG-DEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLD-------YLDEKHTIFGEVAEGLETLSRINE 141 (589)
Q Consensus 77 ~~~-~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~-------~ld~~~~vFG~Vv~G~~vl~~i~~ 141 (589)
.++ ++ ... .-...|-|++...+.+ |.|-+.+ .| .+-...++||+|+.|++.|.+|..
T Consensus 49 ~l~~~~-~~~-~~~~~GDi~Yw~pg~~-----l~ifyg~-~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 49 KLPTEE-NPR-SSVEAGDIAYWPPGGA-----LAIFYGD-TPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp ----SS-SEE-SSB-TTEEEEECCCTE-----EEEESS---TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred CCCccc-Ccc-ccccCceEEEeCCCCE-----EEEEecC-cccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 011 11 011 1125688888765433 6666655 22 455678899999999998888853
No 177
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.73 E-value=0.15 Score=57.17 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=66.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee--CCeEEEEE
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI--DDRRIHVD 317 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i--~gr~i~V~ 317 (589)
|-..+.++-|++..++-..|..+|..||.|..++...+- ..|.|+|.+.+.|..|+.+|+|+++ -|-+.+|.
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 334567777888888999999999999999999887753 4899999999999999999999865 58889999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
+|+...
T Consensus 370 ~ak~~~ 375 (1007)
T KOG4574|consen 370 FAKTLP 375 (1007)
T ss_pred eccccc
Confidence 998643
No 178
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.66 E-value=0.72 Score=45.96 Aligned_cols=70 Identities=23% Similarity=0.296 Sum_probs=51.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeE-EEEEecc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRR-IHVDFSQ 320 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~-i~V~~a~ 320 (589)
.=|-|-++|+..+ ..|..+|.+||.|+...... .-.+-+|.|.+..+|++|| ..||..|+|-. |-|.-+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 4555667877655 56778999999997654431 2258999999999999999 46999998854 4455433
No 179
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.86 E-value=0.2 Score=50.86 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=67.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
...++|++++.+.+.+.++..+|..+|.+..+.+........++|+++|.|...+.+..||.......+.+..+...+.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46799999999999999899999999988888777766778899999999999999999996544457777777776665
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
.
T Consensus 167 ~ 167 (285)
T KOG4210|consen 167 R 167 (285)
T ss_pred c
Confidence 4
No 180
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.52 E-value=0.22 Score=52.37 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=56.8
Q ss_pred eEEEecCCCCC-CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 244 VLFVCKLNPVT-EDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 244 ~i~V~nL~~~~-te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.|-+.-.++.. |-.+|...|.+||+|..|.|-.. .-.|.|+|.+..+|-.|. ..++..|+++.|+|-|-++
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 33344444443 45789999999999999988553 247999999999997787 5799999999999999887
No 181
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.42 E-value=1.8 Score=45.64 Aligned_cols=69 Identities=14% Similarity=0.311 Sum_probs=58.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRF-GTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD 311 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~-G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g 311 (589)
+.+.|+|=.+|..+|--+|..|+..| -.|..++|+++... .+-.++|.|.+..+|...+..+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37899999999999999999998866 46779999996432 34468899999999999999999998764
No 182
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=86.74 E-value=0.82 Score=49.36 Aligned_cols=10 Identities=10% Similarity=0.640 Sum_probs=4.7
Q ss_pred CccCCceEEE
Q 007792 35 KYYNGCLFHT 44 (589)
Q Consensus 35 ~~Y~g~~f~r 44 (589)
+||+.+.|..
T Consensus 220 ~yf~ds~~~q 229 (757)
T KOG4368|consen 220 GYFDDSIIQQ 229 (757)
T ss_pred CchhHHHHHH
Confidence 4455554443
No 183
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.80 E-value=5.2 Score=43.59 Aligned_cols=80 Identities=20% Similarity=0.383 Sum_probs=61.1
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhccC----CCeEEEEEeecCC----------CCC---------------------
Q 007792 239 KPPENVLFVCKLNPV-TEDEDLHTIFSRF----GTVVSAEIIRDFK----------TGD--------------------- 282 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~-~te~~L~~~F~~~----G~v~~~~i~~d~~----------tg~--------------------- 282 (589)
..+.+.|-|.||.|. +...+|..+|..| |.|.+|.|+.... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 446789999999997 7889999999866 6899998765311 122
Q ss_pred ---------------c-ccEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEe
Q 007792 283 ---------------S-LNYAFIEFENRQACERAYSKMDNALIDD--RRIHVDF 318 (589)
Q Consensus 283 ---------------~-~g~aFV~f~~~~~a~~A~~~l~g~~i~g--r~i~V~~ 318 (589)
. .-||.|+|.+...|...+..++|++|.. ..|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 1289999999999999999999999875 4444444
No 184
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=80.33 E-value=1.4 Score=48.76 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=10.1
Q ss_pred CCChhHHHHHHHHHhc
Q 007792 19 DKCPLTTKNFLKLCKI 34 (589)
Q Consensus 19 ~~aP~~~~nF~~l~~~ 34 (589)
+..|...++||-..-+
T Consensus 181 Nlnpsv~E~~ll~tfG 196 (877)
T KOG0151|consen 181 NLNPSVDENFLLRTFG 196 (877)
T ss_pred cCCccccHHHHHHHhc
Confidence 5566677777765544
No 185
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.47 E-value=11 Score=39.32 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=45.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTV-VSAEIIRDFKTGDSLNYAFIEFENRQACERAYS 302 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v-~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~ 302 (589)
-.+.|=|-++|...-.++|...|..|+.- ..|++|-+ -.||..|.+...|..||-
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh
Confidence 35788899999999889999999999753 36677666 389999999999999994
No 186
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=76.26 E-value=16 Score=28.28 Aligned_cols=55 Identities=22% Similarity=0.368 Sum_probs=43.1
Q ss_pred CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 253 VTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 253 ~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
.++-++|+..|..|+- . .|..++ | || ||.|.+..+|++++...+|..+-+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999964 2 344442 2 43 79999999999999999999988877765
No 187
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=74.78 E-value=4.7 Score=39.70 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=27.5
Q ss_pred CceEEEecCCCC------------CCHHHHHHHhccCCCeEEEEEee
Q 007792 242 ENVLFVCKLNPV------------TEDEDLHTIFSRFGTVVSAEIIR 276 (589)
Q Consensus 242 ~~~i~V~nL~~~------------~te~~L~~~F~~~G~v~~~~i~~ 276 (589)
..|||+.+||-. -++.-|...|..||.|..|.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 458888888753 34678999999999999887753
No 188
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=71.81 E-value=0.8 Score=43.62 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=56.8
Q ss_pred CceEEEec----CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 007792 242 ENVLFVCK----LNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI 309 (589)
Q Consensus 242 ~~~i~V~n----L~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i 309 (589)
..+++.|+ |...++++.+..+|++.|++..+++..+.. |.++.++|+.+....+.-.|+....+..+
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 45777787 888899999999999999999999988744 78899999999999888889887776543
No 189
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=71.42 E-value=9.8 Score=38.18 Aligned_cols=7 Identities=0% Similarity=0.563 Sum_probs=2.8
Q ss_pred EEcCHHH
Q 007792 290 EFENRQA 296 (589)
Q Consensus 290 ~f~~~~~ 296 (589)
.|.+.++
T Consensus 110 nydT~Es 116 (335)
T KOG0113|consen 110 NYDTSES 116 (335)
T ss_pred cccccHH
Confidence 4444333
No 190
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=64.06 E-value=5.9 Score=22.23 Aligned_cols=17 Identities=53% Similarity=1.245 Sum_probs=15.0
Q ss_pred CCccCCCCCCCCccCCC
Q 007792 341 GCFKCGGLDHIAKDCTG 357 (589)
Q Consensus 341 ~~~~~g~~~~~~~~~~~ 357 (589)
.||.|+..||++.+|+.
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 48999999999999874
No 191
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=63.80 E-value=3.7 Score=41.64 Aligned_cols=6 Identities=17% Similarity=-0.025 Sum_probs=2.3
Q ss_pred ceEEEe
Q 007792 92 GTVAMA 97 (589)
Q Consensus 92 G~vs~a 97 (589)
.+|++.
T Consensus 37 fLvg~C 42 (319)
T KOG0796|consen 37 FLVGFC 42 (319)
T ss_pred HHhCCC
Confidence 333333
No 192
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.83 E-value=5.7 Score=36.92 Aligned_cols=74 Identities=16% Similarity=0.335 Sum_probs=55.5
Q ss_pred CceEEEecCCCCCCH-----HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCe-EEE
Q 007792 242 ENVLFVCKLNPVTED-----EDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDR-RIH 315 (589)
Q Consensus 242 ~~~i~V~nL~~~~te-----~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr-~i~ 315 (589)
.+++++.+++..+-. .....+|-+|-+.....+.. +.++.-|.|.+.+.|..|...+++..|.|+ .|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 467888888776432 22345666777666555544 446777899999999999999999999998 888
Q ss_pred EEeccc
Q 007792 316 VDFSQS 321 (589)
Q Consensus 316 V~~a~~ 321 (589)
.-++++
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 888876
No 193
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=60.49 E-value=24 Score=36.81 Aligned_cols=80 Identities=25% Similarity=0.412 Sum_probs=56.6
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhccC----CCeEEEEEeecCC----------------------------------
Q 007792 239 KPPENVLFVCKLNPV-TEDEDLHTIFSRF----GTVVSAEIIRDFK---------------------------------- 279 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~-~te~~L~~~F~~~----G~v~~~~i~~d~~---------------------------------- 279 (589)
..+.+.|-|-||.|. +...+|..+|+.| |+|..|.|+....
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 456788999999997 7778999998865 6777776653210
Q ss_pred ------CC------Cc-------------------ccEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEe
Q 007792 280 ------TG------DS-------------------LNYAFIEFENRQACERAYSKMDNALIDD--RRIHVDF 318 (589)
Q Consensus 280 ------tg------~~-------------------~g~aFV~f~~~~~a~~A~~~l~g~~i~g--r~i~V~~ 318 (589)
-| .- .-||.|+|.+...+...+..++|.++.. ..+-+.|
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 00 00 1278999999999999999999988764 4444444
No 194
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=57.23 E-value=32 Score=34.28 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=36.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCcccEEEEEEcCHH
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTV-VSAEIIRDFKTGDSLNYAFIEFENRQ 295 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v-~~~~i~~d~~tg~~~g~aFV~f~~~~ 295 (589)
.+-|||+||+.++.-.+|+..+.+.|.+ ..+.+.. +.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCcc
Confidence 4579999999999999999999877643 3444422 4578999997643
No 195
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=55.79 E-value=0.6 Score=48.48 Aligned_cols=74 Identities=18% Similarity=0.372 Sum_probs=61.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEII-RDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~-~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
...+-|.|+|+...++.|-.++.+||.|..|..+ .+..| ...-|+|...+.+..||..|+|..+....++|.|-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 4568899999999999999999999999987553 33322 34557899999999999999999999988888774
No 196
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=51.40 E-value=29 Score=27.01 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 257 EDLHTIFSRFG-TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 257 ~~L~~~F~~~G-~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
++|.+.|...| +|..+.-+....++.+.-.-||++....+. .+.|+=..|++..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecCCC
Confidence 45677777777 677887777777778888899998866553 334555678899988887653
No 197
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=49.16 E-value=26 Score=27.30 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 257 EDLHTIFSRFG-TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 257 ~~L~~~F~~~G-~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
.+|.+.|...| ++..+.-+....+..+...-||+.....+... .|+=+.|+|..|.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46778888888 67788888877777777888888876544333 355567889998887654
No 198
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=48.33 E-value=38 Score=34.11 Aligned_cols=87 Identities=17% Similarity=0.348 Sum_probs=61.7
Q ss_pred CCCCCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecC-------CCCCcccEEEEEEcCHHHHHHHHH----
Q 007792 234 PDADIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDF-------KTGDSLNYAFIEFENRQACERAYS---- 302 (589)
Q Consensus 234 ~~~~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~-------~tg~~~g~aFV~f~~~~~a~~A~~---- 302 (589)
|.....-....|.+.||...++--.+...|.+||+|.+|.++.+. ...+...-..+-|-+.+.|.....
T Consensus 7 PkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQ 86 (309)
T PF10567_consen 7 PKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQ 86 (309)
T ss_pred CCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHH
Confidence 333334456788999999999988899999999999999999764 122334677888988888765542
Q ss_pred hcCC--ceeCCeEEEEEecc
Q 007792 303 KMDN--ALIDDRRIHVDFSQ 320 (589)
Q Consensus 303 ~l~g--~~i~gr~i~V~~a~ 320 (589)
.|.- ..+....|.|.|..
T Consensus 87 rLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 87 RLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHHHhcCCcceeEEEEE
Confidence 2222 34667777777654
No 199
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=47.56 E-value=33 Score=28.73 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=22.5
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHH
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLK 30 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~ 30 (589)
|-|.|.---|.-+++|+... |.+|..+..
T Consensus 4 MRiri~fEsg~c~~eL~ee~-pE~vr~i~d 32 (126)
T COG2164 4 MRIRITFESGHCTGELDEEN-PESVRRIYD 32 (126)
T ss_pred EEEEEEEecceEEEEccccC-hHHHHHHHH
Confidence 55666666699999999876 999987654
No 200
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=43.00 E-value=2.6e+02 Score=31.98 Aligned_cols=67 Identities=7% Similarity=0.131 Sum_probs=50.6
Q ss_pred EEEecC--CCCCCHHHHHHHhccCCCe-----EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 245 LFVCKL--NPVTEDEDLHTIFSRFGTV-----VSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 245 i~V~nL--~~~~te~~L~~~F~~~G~v-----~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
+|| |+ ...++..+|..++..-+.| -.|.|.. .|.||+.. ...|...+..|++..|.|+.|.|+
T Consensus 489 ~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 489 YRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceEEE
Confidence 444 45 4468888888888765544 3456644 49999997 566888999999999999999999
Q ss_pred eccc
Q 007792 318 FSQS 321 (589)
Q Consensus 318 ~a~~ 321 (589)
.+..
T Consensus 559 ~~~~ 562 (629)
T PRK11634 559 LLGD 562 (629)
T ss_pred ECCC
Confidence 8853
No 201
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=42.72 E-value=29 Score=34.76 Aligned_cols=32 Identities=22% Similarity=0.565 Sum_probs=25.6
Q ss_pred CCCCCCCccCCCCCCCCccCCCCCCccccccc
Q 007792 336 TGKGKGCFKCGGLDHIAKDCTGQQPAKYILRD 367 (589)
Q Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 367 (589)
...+.-||+||..|||...|+-.+-..|..+.
T Consensus 173 pPpgY~CyRCGqkgHwIqnCpTN~DpnfdgkR 204 (427)
T COG5222 173 PPPGYVCYRCGQKGHWIQNCPTNQDPNFDGKR 204 (427)
T ss_pred CCCceeEEecCCCCchhhcCCCCCCCCcccee
Confidence 34566799999999999999988777666553
No 202
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=41.52 E-value=30 Score=33.70 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=45.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYS 302 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~ 302 (589)
......+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 4456799999999999999999999999999777776654444344455555544444444443
No 203
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=40.78 E-value=38 Score=34.65 Aligned_cols=6 Identities=17% Similarity=0.883 Sum_probs=2.4
Q ss_pred EEEEEc
Q 007792 287 AFIEFE 292 (589)
Q Consensus 287 aFV~f~ 292 (589)
.||-|.
T Consensus 176 v~vry~ 181 (367)
T KOG0835|consen 176 VFVRYS 181 (367)
T ss_pred eeeecC
Confidence 344443
No 204
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=35.36 E-value=1.3e+02 Score=28.12 Aligned_cols=56 Identities=9% Similarity=0.082 Sum_probs=35.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhccC-CCeEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHh
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRF-GTVVSAEIIRDFKT-GDSLNYAFIEFENRQACERAYSK 303 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~-G~v~~~~i~~d~~t-g~~~g~aFV~f~~~~~a~~A~~~ 303 (589)
.++|.. .|+++|..+...- |.+..|.+-..... ...+|-.||+|.+.++|.++++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 356655 5555555544322 67777766443211 24578899999999999988753
No 205
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=32.55 E-value=35 Score=38.13 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=60.2
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
..+||+.|-....+..-|..++..+++++...++.....+...+-||++|.....+..|. .|.+..+..+.+.+
T Consensus 511 ~p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 511 QPTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKS 584 (681)
T ss_pred CCceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceec
Confidence 349999998888888889999999999998888887777777789999999988887776 56777666555543
No 206
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=31.16 E-value=1.3e+02 Score=26.34 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=35.3
Q ss_pred EEEEEecceeEEEEecCCCCh---------hHHHHHHHHHhcC-ccCCceEEEeecC
Q 007792 2 SVLIVTSLGDIVVDLFVDKCP---------LTTKNFLKLCKIK-YYNGCLFHTVQKD 48 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP---------~~~~nF~~l~~~~-~Y~g~~f~rv~~~ 48 (589)
-|.|+|..|++.|..-.+.|+ .+++.||+....- .-+.+.|+-|+++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 377999999998887755543 2688999888652 2567889888886
No 207
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=31.03 E-value=75 Score=27.61 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=29.2
Q ss_pred eEEEecCCCCC---------CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHH-HHHHH
Q 007792 244 VLFVCKLNPVT---------EDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQA-CERAY 301 (589)
Q Consensus 244 ~i~V~nL~~~~---------te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~-a~~A~ 301 (589)
++.|.|++... +.+.|...|..|.++. +..+.++. ...|++.|+|...-. -..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 45566775433 4578999999998875 55555533 367999999996544 33444
No 208
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=30.25 E-value=62 Score=33.89 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=48.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCC-eEEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHhcCCceeC
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGT-VVSAEIIRDFKT--GDSLNYAFIEFENRQACERAYSKMDNALID 310 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~-v~~~~i~~d~~t--g~~~g~aFV~f~~~~~a~~A~~~l~g~~i~ 310 (589)
...|.|-+||+..++.+|.+-+..|-. |....+.....+ ....+.|||.|...+++......++|..|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 357888999999999999888777642 222333321111 113578999999999999988899997653
No 209
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=30.16 E-value=8.1 Score=41.93 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=53.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD 311 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g 311 (589)
..++|||.|++++++-.+|..++..+--+..+.+.....-....-+++|+|.-.-....|+.+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 35789999999999999999999988666665554332222344588999998777888888888865543
No 210
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.32 E-value=11 Score=39.62 Aligned_cols=78 Identities=4% Similarity=-0.160 Sum_probs=59.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
...|+..||..+++.+|.-+|.-||.|..+.+..--..|-..-.+||... ...|..+|..+.-..+.|..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCch
Confidence 34678889999999999999999999988876554444555567888775 3466677766666677888888888764
No 211
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=23.96 E-value=54 Score=22.97 Aligned_cols=19 Identities=32% Similarity=0.761 Sum_probs=16.5
Q ss_pred CCCccCCCCCCCCccCCCC
Q 007792 340 KGCFKCGGLDHIAKDCTGQ 358 (589)
Q Consensus 340 ~~~~~~g~~~~~~~~~~~~ 358 (589)
..|..|+..|||.++|+..
T Consensus 5 ~~CqkC~~~GH~tyeC~~~ 23 (42)
T PF13917_consen 5 VRCQKCGQKGHWTYECPNK 23 (42)
T ss_pred CcCcccCCCCcchhhCCCC
Confidence 4589999999999999953
No 212
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=23.80 E-value=82 Score=30.76 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=27.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSA 272 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~ 272 (589)
...++|+-|||..+|++.|..+.+++|.+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 45799999999999999999999999865543
No 213
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=22.90 E-value=1.4e+02 Score=24.52 Aligned_cols=49 Identities=8% Similarity=0.147 Sum_probs=32.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFE 292 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~ 292 (589)
+..-|||||++..+-+.-...+....+.-.-+-+..+ .+ ..||+|-++-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~-~n--eqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD-NN--EQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc-CC--CCCEEEEEeC
Confidence 4568999999999987766666665543333333332 22 6699998773
No 214
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=22.02 E-value=39 Score=36.59 Aligned_cols=8 Identities=0% Similarity=0.314 Sum_probs=3.4
Q ss_pred CHHHHHHH
Q 007792 293 NRQACERA 300 (589)
Q Consensus 293 ~~~~a~~A 300 (589)
+.++|.++
T Consensus 236 dkeea~a~ 243 (653)
T KOG2548|consen 236 DKEEAKAQ 243 (653)
T ss_pred hHHHHHHH
Confidence 44444433
No 215
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.29 E-value=2.1e+02 Score=23.05 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.3
Q ss_pred cccEEEEEEcCHHHHHHHHHhcCCce
Q 007792 283 SLNYAFIEFENRQACERAYSKMDNAL 308 (589)
Q Consensus 283 ~~g~aFV~f~~~~~a~~A~~~l~g~~ 308 (589)
.+||-|||=.+..++..|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 77999999999999999998877654
Done!