Query 007792
Match_columns 589
No_of_seqs 537 out of 3850
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 10:37:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ok3_A Peptidyl-prolyl CIS-tra 100.0 7.3E-48 2.5E-52 354.5 17.8 160 1-168 1-161 (161)
2 2poe_A Cyclophilin-like protei 100.0 3.3E-47 1.1E-51 356.7 17.7 162 1-170 17-182 (185)
3 1zkc_A Peptidyl-prolyl CIS-tra 100.0 1.3E-46 4.5E-51 354.4 17.6 162 2-171 21-183 (197)
4 3bo7_A Peptidyl-prolyl CIS-tra 100.0 1.5E-46 5.1E-51 357.7 17.7 169 2-171 8-181 (201)
5 2b71_A Cyclophilin-like protei 100.0 5.5E-46 1.9E-50 350.3 17.6 157 1-165 39-195 (196)
6 2fu0_A Cyclophilin, putative; 100.0 8.8E-46 3E-50 339.6 17.2 154 1-162 6-159 (160)
7 2x7k_A Peptidyl-prolyl CIS-tra 100.0 1.3E-45 4.4E-50 340.6 17.0 154 1-162 12-165 (166)
8 2k7n_A Peptidyl-prolyl CIS-tra 100.0 3.9E-45 1.3E-49 345.5 17.2 163 1-171 12-174 (203)
9 2a2n_A Peptidylprolyl isomeras 100.0 1.4E-44 4.7E-49 336.2 17.2 153 1-161 22-175 (176)
10 3bkp_A Cyclophilin; malaria, i 100.0 9.6E-45 3.3E-49 350.8 16.3 164 1-171 22-201 (232)
11 2hq6_A Serologically defined c 100.0 2.9E-44 1E-48 336.3 16.0 158 2-168 26-185 (185)
12 1w74_A Peptidyl-prolyl CIS-tra 100.0 1.1E-43 3.9E-48 333.6 16.9 151 1-162 24-191 (191)
13 3ich_A Peptidyl-prolyl CIS-tra 100.0 6.4E-44 2.2E-48 335.2 14.0 155 7-170 27-187 (188)
14 2wfi_A Peptidyl-prolyl CIS-tra 100.0 5.7E-43 2E-47 326.9 16.6 148 6-162 20-179 (179)
15 1a58_A Cyclophilin; isomerase, 100.0 8.3E-43 2.8E-47 325.6 16.7 147 7-162 18-176 (177)
16 2haq_A Cyclophilin; rotamase, 100.0 5.1E-43 1.8E-47 324.0 14.7 151 2-162 17-172 (172)
17 2he9_A NK-tumor recognition pr 100.0 1.1E-42 3.6E-47 327.6 16.7 153 2-163 25-190 (192)
18 1mzw_A Cyclophilin H, U-snRNP- 100.0 1E-42 3.6E-47 324.5 16.1 147 7-162 22-177 (177)
19 3pmp_A Cyclophilin A; peptidyl 100.0 1.3E-42 4.6E-47 320.7 16.5 153 1-163 7-164 (164)
20 2cmt_A Peptidyl-prolyl CIS-tra 100.0 2.8E-42 9.4E-47 319.9 17.6 146 7-162 22-171 (172)
21 2z6w_A Peptidyl-prolyl CIS-tra 100.0 3.4E-42 1.2E-46 317.7 16.5 146 7-162 15-164 (165)
22 1qng_A Peptidyl-prolyl CIS-tra 100.0 4.1E-42 1.4E-46 318.8 16.3 150 3-162 6-170 (170)
23 2igv_A Peptidyl-prolyl CIS-tra 100.0 5.6E-42 1.9E-46 318.8 16.8 147 7-163 15-172 (173)
24 2r99_A Peptidyl-prolyl CIS-tra 100.0 9.4E-42 3.2E-46 316.9 17.9 147 7-163 23-173 (173)
25 3s6m_A Peptidyl-prolyl CIS-tra 100.0 3.2E-42 1.1E-46 319.7 14.5 151 1-162 4-167 (167)
26 1lop_A Cyclophilin A; rotamase 100.0 4.5E-42 1.5E-46 317.2 12.6 150 3-163 2-164 (164)
27 2ose_A Probable peptidyl-proly 100.0 2.1E-42 7.2E-47 335.3 10.8 166 1-171 19-215 (234)
28 2poy_A Peptidyl-prolyl CIS-tra 100.0 2.1E-41 7.3E-46 317.2 16.6 145 7-161 31-186 (186)
29 2c3b_A Ppiase, cyclophilin; is 100.0 2.4E-42 8.4E-47 320.5 9.7 147 7-162 19-172 (172)
30 1v9t_A Cyclophilin B; beta bar 100.0 1.9E-41 6.6E-46 313.6 15.3 151 1-162 5-165 (166)
31 3rdd_A Peptidyl-prolyl CIS-tra 100.0 3.9E-41 1.3E-45 315.6 16.6 152 2-163 24-184 (184)
32 1z81_A Cyclophilin; structural 100.0 2.9E-41 9.9E-46 324.5 15.9 147 7-162 71-229 (229)
33 4fru_A Cyclophilin B, peptidyl 100.0 6E-41 2E-45 315.5 16.9 148 7-163 24-175 (185)
34 3k2c_A Peptidyl-prolyl CIS-tra 100.0 1E-40 3.5E-45 314.8 16.5 147 7-163 39-191 (193)
35 1ihg_A Cyclophilin 40; ppiase 100.0 1.1E-37 3.8E-42 328.6 17.3 154 3-166 18-188 (370)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 5E-35 1.7E-39 298.4 7.2 133 2-142 172-345 (369)
37 3pgw_S U1-70K; protein-RNA com 100.0 7.2E-27 2.5E-31 249.7 25.4 85 239-323 99-183 (437)
38 4fxv_A ELAV-like protein 1; RN 99.8 6.2E-20 2.1E-24 155.3 11.7 81 241-321 18-98 (99)
39 3s8s_A Histone-lysine N-methyl 99.8 5.2E-19 1.8E-23 152.6 12.0 84 239-322 3-86 (110)
40 2lxi_A RNA-binding protein 10; 99.8 1.5E-19 5E-24 150.6 6.8 84 242-325 1-86 (91)
41 2lkz_A RNA-binding protein 5; 99.8 6.8E-19 2.3E-23 147.5 7.2 81 241-321 8-94 (95)
42 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.3E-18 1.1E-22 140.9 11.1 83 240-322 4-86 (87)
43 3md1_A Nuclear and cytoplasmic 99.8 5.5E-18 1.9E-22 138.2 11.6 80 243-322 2-81 (83)
44 2cq0_A Eukaryotic translation 99.7 6.8E-18 2.3E-22 143.8 12.2 86 238-323 11-96 (103)
45 2cqc_A Arginine/serine-rich sp 99.7 8E-18 2.7E-22 141.0 12.1 85 237-321 10-94 (95)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.9E-18 1.7E-22 139.1 10.5 82 239-320 4-85 (85)
47 2x1f_A MRNA 3'-END-processing 99.7 6.5E-18 2.2E-22 142.0 11.3 85 241-325 1-85 (96)
48 2dnz_A Probable RNA-binding pr 99.7 7E-18 2.4E-22 141.3 11.5 84 240-323 3-86 (95)
49 1x5u_A Splicing factor 3B subu 99.7 8E-18 2.7E-22 143.8 12.0 88 237-324 10-97 (105)
50 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-17 4E-22 139.7 12.7 83 238-320 12-94 (94)
51 2dgs_A DAZ-associated protein 99.7 1.1E-17 3.7E-22 141.5 12.0 84 239-323 7-90 (99)
52 1whw_A Hypothetical protein ri 99.7 1.3E-17 4.5E-22 140.9 12.4 85 239-323 5-89 (99)
53 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.1E-18 2.4E-22 143.3 10.8 86 238-323 8-93 (102)
54 2dgo_A Cytotoxic granule-assoc 99.7 3.1E-17 1.1E-21 142.6 14.8 86 239-324 12-97 (115)
55 2dnm_A SRP46 splicing factor; 99.7 7E-18 2.4E-22 143.7 10.2 85 239-323 10-94 (103)
56 2la6_A RNA-binding protein FUS 99.7 8.6E-18 2.9E-22 142.1 10.7 85 236-320 7-99 (99)
57 2do4_A Squamous cell carcinoma 99.7 1.9E-17 6.6E-22 140.1 12.8 84 239-323 14-97 (100)
58 1x5t_A Splicing factor 3B subu 99.7 7.3E-18 2.5E-22 141.5 10.0 84 240-323 3-87 (96)
59 3ex7_B RNA-binding protein 8A; 99.7 5.7E-18 1.9E-22 149.8 9.8 89 236-324 16-104 (126)
60 2cpz_A CUG triplet repeat RNA- 99.7 9.4E-18 3.2E-22 145.9 11.0 86 238-323 21-106 (115)
61 1p27_B RNA-binding protein 8A; 99.7 8.5E-18 2.9E-22 143.9 10.5 85 239-323 20-104 (106)
62 1x4h_A RNA-binding protein 28; 99.7 1.8E-17 6.3E-22 143.0 12.5 86 238-323 11-102 (111)
63 3p5t_L Cleavage and polyadenyl 99.7 1.8E-18 6E-23 143.7 5.8 81 243-323 2-84 (90)
64 2cqd_A RNA-binding region cont 99.7 3.8E-17 1.3E-21 142.3 14.0 84 238-322 13-96 (116)
65 2cpf_A RNA binding motif prote 99.7 1.4E-17 4.8E-22 140.4 10.8 84 240-323 3-89 (98)
66 2dng_A Eukaryotic translation 99.7 3.2E-17 1.1E-21 139.6 13.1 83 239-323 12-94 (103)
67 1x5s_A Cold-inducible RNA-bind 99.7 1.1E-17 3.8E-22 142.1 10.0 86 238-323 8-93 (102)
68 2jrs_A RNA-binding protein 39; 99.7 1.4E-17 4.7E-22 143.2 10.6 85 238-322 22-106 (108)
69 1oo0_B CG8781-PA, drosophila Y 99.7 1.6E-17 5.4E-22 143.3 10.9 85 239-323 23-107 (110)
70 3ns6_A Eukaryotic translation 99.7 3.1E-18 1.1E-22 145.2 6.2 83 241-323 5-94 (100)
71 2fy1_A RNA-binding motif prote 99.7 2.1E-17 7.2E-22 144.0 11.4 83 240-323 5-87 (116)
72 1wi8_A EIF-4B, eukaryotic tran 99.7 3E-17 1E-21 140.0 12.2 83 239-323 12-95 (104)
73 2cph_A RNA binding motif prote 99.7 2.3E-17 8E-22 141.3 11.4 86 238-323 11-98 (107)
74 2d9p_A Polyadenylate-binding p 99.7 3E-17 1E-21 139.7 11.8 83 239-323 12-94 (103)
75 2cpe_A RNA-binding protein EWS 99.7 2.3E-17 7.7E-22 143.0 11.2 87 238-324 11-105 (113)
76 3ulh_A THO complex subunit 4; 99.7 3E-17 1E-21 140.8 11.7 81 239-320 26-106 (107)
77 4f25_A Polyadenylate-binding p 99.7 2E-17 6.8E-22 144.0 10.8 80 242-323 5-84 (115)
78 2dnh_A Bruno-like 5, RNA bindi 99.7 3.4E-17 1.2E-21 139.9 12.0 84 239-323 12-98 (105)
79 3s7r_A Heterogeneous nuclear r 99.7 4.4E-17 1.5E-21 134.1 12.2 80 239-319 8-87 (87)
80 2div_A TRNA selenocysteine ass 99.7 1.7E-17 5.8E-22 140.2 9.9 84 239-322 6-94 (99)
81 2dhg_A TRNA selenocysteine ass 99.7 2.2E-17 7.7E-22 140.7 10.5 85 239-324 6-92 (104)
82 1u6f_A Tcubp1, RNA-binding pro 99.7 4.3E-17 1.5E-21 146.7 12.9 85 239-323 39-123 (139)
83 3ucg_A Polyadenylate-binding p 99.7 3.6E-17 1.2E-21 135.2 11.1 80 242-322 6-85 (89)
84 2kxn_B Transformer-2 protein h 99.7 1.7E-17 6E-22 147.3 9.7 87 237-323 41-127 (129)
85 4a8x_A RNA-binding protein wit 99.7 2.2E-17 7.6E-22 136.1 9.7 82 241-322 3-85 (88)
86 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.7E-17 1.6E-21 149.5 12.9 85 239-323 36-120 (156)
87 2cqi_A Nucleolysin TIAR; RNA r 99.7 8E-17 2.7E-21 137.1 13.2 84 238-323 11-94 (103)
88 2cq3_A RNA-binding protein 9; 99.7 1E-16 3.5E-21 136.4 13.8 85 237-323 10-94 (103)
89 3r27_A HnRNP L, heterogeneous 99.7 3.1E-17 1.1E-21 137.6 10.2 84 233-322 12-97 (100)
90 2khc_A Testis-specific RNP-typ 99.7 3.7E-17 1.2E-21 142.8 11.1 82 239-320 37-118 (118)
91 2cqp_A RNA-binding protein 12; 99.7 2.5E-17 8.6E-22 138.8 9.6 83 239-321 12-94 (98)
92 2ywk_A Putative RNA-binding pr 99.7 3.8E-17 1.3E-21 136.9 10.6 82 239-321 13-94 (95)
93 2dgp_A Bruno-like 4, RNA bindi 99.7 2.5E-17 8.7E-22 140.9 9.5 85 239-323 10-97 (106)
94 3n9u_C Cleavage and polyadenyl 99.7 3.6E-17 1.2E-21 150.1 11.0 82 241-322 54-137 (156)
95 2ek1_A RNA-binding protein 12; 99.7 1.3E-17 4.5E-22 139.7 7.5 83 239-321 12-94 (95)
96 2do0_A HnRNP M, heterogeneous 99.7 1.7E-16 5.7E-21 137.7 14.6 83 239-322 12-94 (114)
97 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.8E-17 1.7E-21 150.9 11.7 86 239-324 69-154 (165)
98 1s79_A Lupus LA protein; RRM, 99.7 2.4E-17 8.2E-22 140.3 8.7 80 240-321 9-88 (103)
99 1sjq_A Polypyrimidine tract-bi 99.7 2.6E-17 9.1E-22 139.5 8.5 80 238-323 12-93 (105)
100 2dgx_A KIAA0430 protein; RRM d 99.7 7.1E-17 2.4E-21 135.6 11.1 80 241-323 8-91 (96)
101 2kn4_A Immunoglobulin G-bindin 99.7 9.9E-17 3.4E-21 147.6 12.9 85 239-323 67-151 (158)
102 2dh8_A DAZ-associated protein 99.7 5.1E-17 1.7E-21 138.8 10.2 84 239-323 13-96 (105)
103 2wbr_A GW182, gawky, LD47780P; 99.7 5.6E-17 1.9E-21 131.3 9.7 75 240-320 5-79 (89)
104 2dis_A Unnamed protein product 99.7 6.3E-17 2.1E-21 139.2 10.6 85 240-324 6-94 (109)
105 2rs2_A Musashi-1, RNA-binding 99.7 9.2E-17 3.2E-21 138.3 11.4 85 238-323 21-105 (109)
106 1p1t_A Cleavage stimulation fa 99.7 1.6E-17 5.6E-22 141.5 6.6 84 241-324 7-90 (104)
107 2cq4_A RNA binding motif prote 99.7 4.6E-17 1.6E-21 141.3 9.4 81 242-323 25-105 (114)
108 1x4e_A RNA binding motif, sing 99.7 1.1E-17 3.9E-22 137.0 5.3 81 240-320 3-83 (85)
109 2cqg_A TDP-43, TAR DNA-binding 99.7 2.4E-16 8.3E-21 134.1 13.7 83 239-323 12-94 (103)
110 2dgw_A Probable RNA-binding pr 99.7 1.7E-16 5.7E-21 131.8 12.0 82 239-323 7-88 (91)
111 2cpi_A CCR4-NOT transcription 99.7 6.4E-17 2.2E-21 139.8 9.5 84 240-323 13-102 (111)
112 2dgv_A HnRNP M, heterogeneous 99.7 9E-17 3.1E-21 133.7 9.9 83 239-323 5-87 (92)
113 1x4a_A Splicing factor, argini 99.7 2.5E-16 8.4E-21 135.5 12.9 82 239-323 19-100 (109)
114 2mss_A Protein (musashi1); RNA 99.7 2.8E-17 9.7E-22 131.3 6.3 75 244-319 1-75 (75)
115 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.6E-17 9E-22 139.4 6.4 83 238-322 15-98 (100)
116 2nlw_A Eukaryotic translation 99.7 9.3E-17 3.2E-21 137.3 9.8 82 239-322 12-100 (105)
117 1x4c_A Splicing factor, argini 99.7 2.8E-16 9.7E-21 135.0 12.8 78 240-324 13-95 (108)
118 2a3j_A U1 small nuclear ribonu 99.7 9.8E-17 3.4E-21 141.7 9.9 83 239-324 26-112 (127)
119 1x4b_A Heterogeneous nuclear r 99.7 1.4E-16 4.8E-21 138.7 10.8 82 241-323 26-107 (116)
120 2cq1_A PTB-like protein L; RRM 99.7 3.6E-16 1.2E-20 132.3 12.7 80 238-323 11-92 (101)
121 1x4d_A Matrin 3; structural ge 99.7 1.1E-16 3.7E-21 135.5 9.3 80 239-324 12-94 (102)
122 2cpy_A RNA-binding protein 12; 99.7 1.1E-16 3.9E-21 138.9 9.6 84 238-323 11-95 (114)
123 2fc9_A NCL protein; structure 99.7 3.3E-16 1.1E-20 132.7 12.2 82 238-323 11-92 (101)
124 2kt5_A RNA and export factor-b 99.7 2.1E-16 7.1E-21 139.4 11.2 84 239-323 32-115 (124)
125 2jwn_A Embryonic polyadenylate 99.7 2.4E-16 8.1E-21 138.9 11.2 81 242-323 36-116 (124)
126 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.7E-16 9.1E-21 141.5 11.8 82 238-319 59-140 (140)
127 2ki2_A SS-DNA binding protein 99.7 2.4E-17 8.3E-22 136.6 4.4 81 243-324 2-82 (90)
128 2m2b_A RNA-binding protein 10; 99.7 3.2E-17 1.1E-21 146.1 5.4 84 239-323 20-109 (131)
129 2ad9_A Polypyrimidine tract-bi 99.7 1.5E-16 5E-21 138.3 9.5 81 237-323 26-108 (119)
130 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.6E-17 1.9E-21 130.2 6.1 76 243-319 1-76 (77)
131 1wez_A HnRNP H', FTP-3, hetero 99.7 2.2E-16 7.5E-21 134.2 10.1 81 239-322 12-92 (102)
132 2err_A Ataxin-2-binding protei 99.7 2.2E-16 7.5E-21 135.9 9.8 84 237-322 24-107 (109)
133 2dgu_A Heterogeneous nuclear r 99.7 7E-16 2.4E-20 131.3 12.8 78 239-324 8-85 (103)
134 1x5o_A RNA binding motif, sing 99.7 4.2E-16 1.4E-20 135.2 11.5 82 239-321 22-111 (114)
135 1wg5_A Heterogeneous nuclear r 99.7 3.7E-16 1.3E-20 133.3 11.0 82 239-322 12-94 (104)
136 3q2s_C Cleavage and polyadenyl 99.7 1.5E-16 5.2E-21 155.4 9.2 82 241-322 67-150 (229)
137 2ytc_A PRE-mRNA-splicing facto 99.7 6.3E-16 2.1E-20 126.5 11.2 76 239-320 9-85 (85)
138 2jvr_A Nucleolar protein 3; RN 99.7 2.7E-16 9.1E-21 135.4 9.3 80 239-322 25-105 (111)
139 2cpd_A Apobec-1 stimulating pr 99.7 1.2E-15 4.1E-20 128.8 13.1 82 234-323 7-90 (99)
140 2fc8_A NCL protein; structure 99.7 6.1E-16 2.1E-20 131.3 11.3 82 239-323 12-93 (102)
141 2lea_A Serine/arginine-rich sp 99.6 7.8E-17 2.7E-21 144.3 5.9 85 239-323 44-128 (135)
142 1wex_A Hypothetical protein (r 99.6 3.8E-16 1.3E-20 133.0 9.8 81 237-323 10-92 (104)
143 2db1_A Heterogeneous nuclear r 99.6 2.3E-16 7.9E-21 137.8 8.7 82 240-323 15-99 (118)
144 2cpj_A Non-POU domain-containi 99.6 4.7E-16 1.6E-20 131.3 10.1 83 237-325 10-92 (99)
145 1fj7_A Nucleolin RBD1, protein 99.6 3.8E-17 1.3E-21 138.6 3.4 83 239-323 14-96 (101)
146 2dnq_A RNA-binding protein 4B; 99.6 6.3E-16 2.2E-20 128.1 10.7 78 239-324 5-82 (90)
147 2dgt_A RNA-binding protein 30; 99.6 9.9E-16 3.4E-20 127.5 11.8 78 239-324 7-84 (92)
148 2krb_A Eukaryotic translation 99.6 1.2E-16 4.1E-21 129.7 6.0 72 243-316 2-80 (81)
149 2cpx_A Hypothetical protein FL 99.6 8.6E-17 2.9E-21 139.8 5.4 85 239-323 22-106 (115)
150 1why_A Hypothetical protein ri 99.6 4.8E-16 1.6E-20 130.7 9.8 79 239-323 14-94 (97)
151 1wel_A RNA-binding protein 12; 99.6 1.2E-16 4E-21 141.0 6.1 82 240-322 23-104 (124)
152 1nu4_A U1A RNA binding domain; 99.6 2.4E-16 8.2E-21 132.5 7.4 82 239-323 5-90 (97)
153 2hgl_A HNRPF protein, heteroge 99.6 2.5E-16 8.6E-21 140.7 7.8 82 240-323 42-126 (136)
154 1x4g_A Nucleolysin TIAR; struc 99.6 7.8E-16 2.7E-20 132.4 10.6 79 240-324 23-101 (109)
155 2xnq_A Nuclear polyadenylated 99.6 1.1E-15 3.8E-20 128.6 11.1 77 238-322 18-95 (97)
156 2e5j_A Methenyltetrahydrofolat 99.6 5E-16 1.7E-20 130.7 8.9 81 238-323 15-95 (97)
157 1fjc_A Nucleolin RBD2, protein 99.6 4.5E-16 1.5E-20 130.6 8.5 80 239-323 13-92 (96)
158 2jvo_A Nucleolar protein 3; nu 99.6 6E-16 2.1E-20 132.9 9.4 78 239-324 28-105 (108)
159 2dnp_A RNA-binding protein 14; 99.6 1.1E-15 3.8E-20 126.6 10.6 77 239-323 6-82 (90)
160 2lcw_A RNA-binding protein FUS 99.4 2.2E-17 7.6E-22 143.8 0.0 85 239-323 4-96 (116)
161 1iqt_A AUF1, heterogeneous nuc 99.6 1.2E-16 4.3E-21 127.5 4.3 75 244-319 1-75 (75)
162 3lqv_A PRE-mRNA branch site pr 99.6 8E-16 2.7E-20 133.6 9.7 81 239-322 5-85 (115)
163 2j8a_A Histone-lysine N-methyl 99.6 7.4E-16 2.5E-20 133.1 9.2 80 242-321 2-95 (136)
164 2f3j_A RNA and export factor b 99.6 7.3E-16 2.5E-20 144.5 10.0 84 239-323 85-168 (177)
165 3md3_A Nuclear and cytoplasmic 99.6 9.7E-16 3.3E-20 141.2 10.7 83 238-320 83-165 (166)
166 4f02_A Polyadenylate-binding p 99.6 1.1E-15 3.8E-20 147.8 11.6 85 239-323 12-96 (213)
167 1x4f_A Matrin 3; structural ge 99.6 4.7E-16 1.6E-20 133.6 7.1 79 239-323 22-103 (112)
168 2la4_A Nuclear and cytoplasmic 99.6 7.2E-16 2.5E-20 130.6 8.2 75 241-321 26-100 (101)
169 2dnn_A RNA-binding protein 12; 99.6 1.3E-15 4.3E-20 130.8 9.8 77 242-321 16-92 (109)
170 2kvi_A Nuclear polyadenylated 99.6 7.7E-16 2.6E-20 129.3 7.9 77 239-323 7-84 (96)
171 3egn_A RNA-binding protein 40; 99.6 5.4E-16 1.8E-20 140.2 7.1 85 239-323 42-131 (143)
172 2lmi_A GRSF-1, G-rich sequence 99.6 3.1E-16 1.1E-20 134.5 5.2 83 239-323 8-93 (107)
173 2hvz_A Splicing factor, argini 99.6 6.5E-16 2.2E-20 130.9 7.2 76 243-323 1-76 (101)
174 2xs2_A Deleted in azoospermia- 99.6 9.1E-16 3.1E-20 130.2 7.7 81 240-323 7-87 (102)
175 1wf1_A RNA-binding protein RAL 99.6 2.1E-15 7.3E-20 129.9 9.8 75 239-321 24-99 (110)
176 2hgn_A Heterogeneous nuclear r 99.6 2.9E-16 1E-20 140.7 3.8 82 239-323 43-124 (139)
177 2g4b_A Splicing factor U2AF 65 99.6 4.8E-15 1.6E-19 137.7 12.2 82 239-320 91-172 (172)
178 2cqh_A IGF-II mRNA-binding pro 99.6 1.7E-15 5.7E-20 126.3 8.1 78 239-323 5-84 (93)
179 1x5p_A Negative elongation fac 99.6 1.2E-14 4.2E-19 122.1 13.4 78 238-323 11-88 (97)
180 2e5g_A U6 snRNA-specific termi 99.6 5E-15 1.7E-19 123.7 10.8 76 241-322 7-82 (94)
181 2diu_A KIAA0430 protein; struc 99.6 2.4E-15 8.3E-20 122.8 8.4 73 241-323 7-85 (96)
182 1whx_A Hypothetical protein ri 99.6 1.7E-15 5.9E-20 130.7 7.9 75 241-321 9-83 (111)
183 2e44_A Insulin-like growth fac 99.6 2.8E-15 9.6E-20 125.7 8.6 79 240-322 13-92 (96)
184 2dha_A FLJ20171 protein; RRM d 99.6 1.4E-15 4.7E-20 133.5 6.6 80 241-322 22-105 (123)
185 1fxl_A Paraneoplastic encephal 99.6 7.1E-15 2.4E-19 135.5 11.7 82 242-323 2-83 (167)
186 2i2y_A Fusion protein consists 99.6 3.2E-15 1.1E-19 136.3 9.1 79 239-322 70-148 (150)
187 3beg_B Splicing factor, argini 99.6 2.6E-15 8.8E-20 130.5 8.0 74 241-321 15-93 (115)
188 1wg1_A KIAA1579 protein, homol 99.6 4.6E-15 1.6E-19 122.3 9.1 75 241-322 4-78 (88)
189 2hgm_A HNRPF protein, heteroge 99.6 2.5E-15 8.7E-20 132.1 7.7 79 240-321 40-120 (126)
190 3d2w_A TAR DNA-binding protein 99.6 4.8E-15 1.6E-19 122.6 8.9 77 238-323 7-85 (89)
191 1b7f_A Protein (SXL-lethal pro 99.6 5.7E-15 1.9E-19 136.5 10.3 83 241-323 2-84 (168)
192 2cq2_A Hypothetical protein LO 99.6 3E-15 1E-19 128.6 7.7 78 239-322 22-106 (114)
193 1l3k_A Heterogeneous nuclear r 99.6 1E-14 3.5E-19 138.5 12.1 84 240-324 102-185 (196)
194 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-14 4.1E-19 127.8 10.9 75 243-322 29-106 (130)
195 1b7f_A Protein (SXL-lethal pro 99.6 2E-14 6.9E-19 132.8 12.0 81 239-319 86-168 (168)
196 2e5i_A Heterogeneous nuclear r 99.5 3.2E-14 1.1E-18 124.6 12.1 77 240-322 21-102 (124)
197 2yh0_A Splicing factor U2AF 65 99.5 2.2E-14 7.4E-19 136.4 11.8 85 239-323 111-195 (198)
198 2qfj_A FBP-interacting repress 99.5 1.7E-14 5.7E-19 139.2 11.2 83 241-323 124-206 (216)
199 4f02_A Polyadenylate-binding p 99.5 2.4E-15 8E-20 145.5 4.9 81 241-323 102-182 (213)
200 2pe8_A Splicing factor 45; RRM 99.5 2.6E-14 9.1E-19 121.7 10.7 83 239-321 5-93 (105)
201 1l3k_A Heterogeneous nuclear r 99.5 2.2E-14 7.6E-19 136.1 11.3 83 239-322 10-92 (196)
202 2dnl_A Cytoplasmic polyadenyla 99.5 1.1E-14 3.7E-19 126.3 7.9 79 240-321 6-87 (114)
203 1sjr_A Polypyrimidine tract-bi 99.5 1.7E-14 5.9E-19 131.6 9.5 76 243-322 47-124 (164)
204 2cjk_A Nuclear polyadenylated 99.5 7.8E-15 2.7E-19 135.5 7.2 80 242-322 87-166 (167)
205 3nmr_A Cugbp ELAV-like family 99.5 9.7E-15 3.3E-19 135.8 7.8 81 239-320 92-175 (175)
206 1fxl_A Paraneoplastic encephal 99.5 3E-14 1E-18 131.3 11.0 81 239-319 85-167 (167)
207 2bz2_A Negative elongation fac 99.5 2.2E-14 7.6E-19 125.7 8.6 77 239-323 36-112 (121)
208 3tyt_A Heterogeneous nuclear r 99.5 3.3E-14 1.1E-18 136.5 10.5 78 240-322 2-80 (205)
209 1fje_B Nucleolin RBD12, protei 99.5 6.5E-14 2.2E-18 130.5 11.4 112 206-322 62-174 (175)
210 2hzc_A Splicing factor U2AF 65 99.5 3.8E-14 1.3E-18 116.3 8.7 71 241-318 5-86 (87)
211 1wf0_A TDP-43, TAR DNA-binding 99.5 2.4E-14 8.4E-19 117.9 7.1 76 241-323 4-79 (88)
212 3md3_A Nuclear and cytoplasmic 99.5 7E-14 2.4E-18 128.7 10.1 79 243-322 1-79 (166)
213 2qfj_A FBP-interacting repress 99.5 6.4E-14 2.2E-18 135.1 9.4 81 242-322 28-108 (216)
214 2ghp_A U4/U6 snRNA-associated 99.5 5.3E-14 1.8E-18 142.5 8.9 83 239-322 207-291 (292)
215 2voo_A Lupus LA protein; RNA-b 99.5 1.6E-13 5.6E-18 130.3 11.3 78 242-321 109-186 (193)
216 3smz_A Protein raver-1, ribonu 99.5 7.5E-14 2.6E-18 140.8 8.6 85 239-324 181-266 (284)
217 2cjk_A Nuclear polyadenylated 99.5 9.7E-14 3.3E-18 128.1 8.4 80 241-322 2-81 (167)
218 3nmr_A Cugbp ELAV-like family 99.5 1.5E-13 5.1E-18 127.7 9.6 82 241-322 2-88 (175)
219 3u1l_A PRE-mRNA-splicing facto 99.4 1.1E-13 3.8E-18 134.7 7.9 79 239-323 131-230 (240)
220 3smz_A Protein raver-1, ribonu 99.4 2.2E-13 7.4E-18 137.4 10.0 85 239-323 92-176 (284)
221 3pgw_A U1-A; protein-RNA compl 99.4 4E-13 1.4E-17 135.4 11.2 82 239-323 6-91 (282)
222 2dit_A HIV TAT specific factor 99.4 8.9E-13 3.1E-17 113.8 11.2 82 238-323 11-103 (112)
223 2adc_A Polypyrimidine tract-bi 99.4 3E-13 1E-17 132.1 8.7 80 238-322 30-110 (229)
224 3v4m_A Splicing factor U2AF 65 99.4 7.5E-13 2.6E-17 112.7 8.7 82 240-321 3-96 (105)
225 3pgw_A U1-A; protein-RNA compl 99.4 1.3E-12 4.3E-17 131.6 11.6 78 238-320 203-281 (282)
226 3tyt_A Heterogeneous nuclear r 99.4 4.7E-13 1.6E-17 128.4 7.9 79 239-319 120-204 (205)
227 2adc_A Polypyrimidine tract-bi 99.4 9.5E-13 3.2E-17 128.6 9.5 79 239-322 148-228 (229)
228 1qm9_A Polypyrimidine tract-bi 99.4 5.2E-13 1.8E-17 127.1 7.4 79 239-322 117-197 (198)
229 1fje_B Nucleolin RBD12, protei 99.4 2.1E-13 7.1E-18 127.1 4.3 82 239-322 10-91 (175)
230 1jmt_A Splicing factor U2AF 35 99.4 2.7E-13 9.1E-18 115.4 4.4 73 246-319 19-103 (104)
231 3ue2_A Poly(U)-binding-splicin 99.4 1.1E-12 3.8E-17 113.9 8.4 81 241-321 19-108 (118)
232 3sde_A Paraspeckle component 1 99.3 1.9E-12 6.6E-17 129.0 9.6 80 239-324 19-98 (261)
233 1qm9_A Polypyrimidine tract-bi 99.3 9.2E-13 3.1E-17 125.4 6.1 76 242-322 3-79 (198)
234 3sde_A Paraspeckle component 1 99.3 4.1E-12 1.4E-16 126.6 10.2 81 241-322 95-179 (261)
235 2ghp_A U4/U6 snRNA-associated 99.3 4E-12 1.4E-16 128.7 8.7 82 241-323 116-198 (292)
236 2g4b_A Splicing factor U2AF 65 99.3 8.2E-12 2.8E-16 115.6 9.1 75 241-322 3-88 (172)
237 2yh0_A Splicing factor U2AF 65 99.3 1.1E-11 3.6E-16 117.7 9.2 75 241-322 3-88 (198)
238 2d9o_A DNAJ (HSP40) homolog, s 99.2 4.6E-11 1.6E-15 100.4 11.5 65 252-323 27-91 (100)
239 3tht_A Alkylated DNA repair pr 99.2 2E-11 6.8E-16 125.1 9.9 77 239-321 15-98 (345)
240 3s6e_A RNA-binding protein 39; 99.2 7.8E-11 2.7E-15 101.5 9.3 78 240-321 5-92 (114)
241 2dnr_A Synaptojanin-1; RRM dom 99.2 1.2E-10 4.3E-15 94.2 9.4 75 238-321 3-85 (91)
242 1owx_A Lupus LA protein, SS-B, 99.1 3.3E-10 1.1E-14 97.8 8.6 77 239-321 15-95 (121)
243 1ufw_A Synaptojanin 2; RNP dom 99.0 1.1E-09 3.8E-14 89.0 7.2 77 236-321 9-94 (95)
244 3dxb_A Thioredoxin N-terminall 98.7 3.5E-08 1.2E-12 95.4 7.9 67 255-321 142-212 (222)
245 3pgw_S U1-70K; protein-RNA com 98.4 1.7E-07 6E-12 99.7 6.6 14 259-272 9-22 (437)
246 2l9w_A U4/U6 snRNA-associated- 98.1 1.2E-05 4E-10 66.6 8.5 73 241-319 20-97 (117)
247 1wey_A Calcipressin 1; structu 97.6 0.00011 3.8E-09 60.7 6.7 75 242-322 5-84 (104)
248 1uw4_A UPF3X; nonsense mediate 97.0 0.0056 1.9E-07 49.6 9.9 68 243-310 2-71 (91)
249 1whv_A Poly(A)-specific ribonu 96.9 0.0027 9.2E-08 51.5 7.5 54 243-305 17-70 (100)
250 3ctr_A Poly(A)-specific ribonu 96.7 0.0027 9.2E-08 51.7 6.0 54 243-305 7-60 (101)
251 2dhx_A Poly (ADP-ribose) polym 96.5 0.017 6E-07 47.4 9.6 72 241-321 7-83 (104)
252 1wwh_A Nucleoporin 35, nucleop 96.2 0.018 6.2E-07 48.8 8.3 72 241-320 23-95 (119)
253 2l08_A Regulator of nonsense t 95.7 0.025 8.5E-07 46.1 6.9 78 242-319 9-93 (97)
254 2nnz_A Hypothetical protein; b 95.7 0.017 5.8E-07 51.6 6.3 103 1-140 30-143 (153)
255 3kop_A Uncharacterized protein 95.3 0.12 4.3E-06 46.4 10.6 42 8-49 30-78 (188)
256 3p3d_A Nucleoporin 53; structu 95.0 0.019 6.6E-07 49.3 4.2 78 242-321 7-98 (132)
257 1zx8_A Hypothetical protein TM 93.9 0.2 6.8E-06 43.6 8.1 102 1-140 13-124 (136)
258 3pq1_A Poly(A) RNA polymerase; 93.7 0.032 1.1E-06 58.9 3.3 56 242-303 53-108 (464)
259 2kn4_A Immunoglobulin G-bindin 93.6 0.065 2.2E-06 47.8 4.9 36 271-308 2-37 (158)
260 2i2y_A Fusion protein consists 93.1 0.027 9.1E-07 50.1 1.3 42 280-322 9-51 (150)
261 3ts2_A Protein LIN-28 homolog 92.0 0.031 1.1E-06 49.7 0.3 93 257-358 2-116 (148)
262 3d45_A Poly(A)-specific ribonu 77.4 4.6 0.00016 43.2 7.7 54 243-305 441-494 (507)
263 1dsq_A Nucleic acid binding pr 75.9 1.8 6.3E-05 25.8 2.4 19 340-358 3-21 (26)
264 2g0c_A ATP-dependent RNA helic 75.6 3.7 0.00013 31.4 4.8 68 244-320 2-75 (76)
265 1a6b_B Momulv, zinc finger pro 70.9 3.7 0.00013 27.4 3.1 22 337-358 8-29 (40)
266 2ysa_A Retinoblastoma-binding 65.2 3.7 0.00013 29.5 2.4 21 339-359 7-27 (55)
267 1u6p_A GAG polyprotein; MLV, A 64.3 5.5 0.00019 28.7 3.1 22 337-358 21-42 (56)
268 4f25_A Polyadenylate-binding p 62.6 0.98 3.3E-05 37.7 -1.3 18 241-258 96-113 (115)
269 1nc8_A Nucleocapsid protein; H 46.4 15 0.00051 22.3 2.6 20 339-358 6-25 (29)
270 2k9u_B Filamin-binding LIM pro 42.8 17 0.00058 21.3 2.2 14 101-114 6-19 (26)
271 4eyt_A Telomerase associated p 30.1 2E+02 0.0067 22.5 7.7 69 242-318 12-87 (129)
272 3lpe_A Putative transcription 21.9 1.9E+02 0.0065 22.6 6.0 34 269-307 40-73 (92)
273 3iyu_X Outer capsid protein VP 20.7 26 0.0009 37.4 0.7 87 40-131 30-127 (776)
No 1
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=7.3e-48 Score=354.49 Aligned_cols=160 Identities=47% Similarity=0.803 Sum_probs=153.6
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
|+|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||++.+++.++.++|+ ..|++
T Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g-------~~~~d 73 (161)
T 2ok3_A 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWG-------KKFED 73 (161)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTS-------SCBCC
T ss_pred CEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCCCCcccC-------Ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 57899
Q ss_pred ccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCC-CCcccceeeccc
Q 007792 81 EIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEK-NRPYKNIRIKHT 159 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~-~~p~~~i~I~~~ 159 (589)
|..+.|+|+.+|+||||+.++++++|||||++.+ +||||++|+|||+|++||+||++|++++++.. ++|..+|+|.+|
T Consensus 74 E~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~-~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~ 152 (161)
T 2ok3_A 74 EYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK-QPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152 (161)
T ss_dssp CCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEE
T ss_pred ccCcCcCcCCCeEEEEecCCCCCcceEEEEEcCC-CCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEE
Confidence 9878899999999999999999999999999998 69999999999999999999999999999887 999999999999
Q ss_pred ccccCCCCC
Q 007792 160 YILEDPFDD 168 (589)
Q Consensus 160 ~vl~~p~~~ 168 (589)
.++.+||++
T Consensus 153 ~i~~~Pf~d 161 (161)
T 2ok3_A 153 TIHANPFAQ 161 (161)
T ss_dssp EEECCSCC-
T ss_pred EEecCCCCC
Confidence 999999974
No 2
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=3.3e-47 Score=356.68 Aligned_cols=162 Identities=41% Similarity=0.735 Sum_probs=151.9
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
|.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||++.+++.++.++|+ ..|++
T Consensus 17 ~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g-------~~~~d 89 (185)
T 2poe_A 17 QGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYG-------RYFDD 89 (185)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSCCCBTTB-------SCBCC
T ss_pred eEEEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCC-------Ccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999987 67899
Q ss_pred ccccCCCCCCCceEEEeccC----CCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceee
Q 007792 81 EIRVDLKHAKTGTVAMASAG----ENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRI 156 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g----~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I 156 (589)
|+.+.|+|+.+|+||||+.+ +++++||||||+.+ +||||++|+|||+|++||+||++|+.++++.+++|.++|+|
T Consensus 90 E~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I 168 (185)
T 2poe_A 90 EIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSS-LPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIII 168 (185)
T ss_dssp CCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEE
T ss_pred cccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCC-CCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEE
Confidence 98889999999999999999 99999999999998 69999999999999999999999999999988999999999
Q ss_pred cccccccCCCCChh
Q 007792 157 KHTYILEDPFDDPA 170 (589)
Q Consensus 157 ~~~~vl~~p~~~~~ 170 (589)
.+|+++.+||+++.
T Consensus 169 ~~~~i~~dPf~d~~ 182 (185)
T 2poe_A 169 KDIVIHSNPIADQE 182 (185)
T ss_dssp EEEEEECCC-----
T ss_pred EEEEEECCCCCCcc
Confidence 99999999998874
No 3
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=1.3e-46 Score=354.36 Aligned_cols=162 Identities=43% Similarity=0.792 Sum_probs=155.3
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCc
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDE 81 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e 81 (589)
.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||++.+++.++.++|+ ..|++|
T Consensus 21 ~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~Gg~si~g-------~~f~dE 93 (197)
T 1zkc_A 21 YVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWG-------KPFKDE 93 (197)
T ss_dssp EEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTB-------SCBCCC
T ss_pred EEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCCCCCccCC-------Cccccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999987 678999
Q ss_pred cccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCC-CCcccceeecccc
Q 007792 82 IRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEK-NRPYKNIRIKHTY 160 (589)
Q Consensus 82 ~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~-~~p~~~i~I~~~~ 160 (589)
+.+.|+|+.+|+||||+.++++++||||||+.+ +|+||++|+|||+|++||+||++|+.++++.+ ++|..+|+|.+|+
T Consensus 94 ~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~ 172 (197)
T 1zkc_A 94 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRS-CAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATT 172 (197)
T ss_dssp CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEE
T ss_pred cCcCcCCCCceEEEEecCCCCCcccEEEEEcCC-CCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEE
Confidence 888999999999999999999999999999998 69999999999999999999999999999987 9999999999999
Q ss_pred cccCCCCChhh
Q 007792 161 ILEDPFDDPAQ 171 (589)
Q Consensus 161 vl~~p~~~~~~ 171 (589)
++.+||+++..
T Consensus 173 v~~dPf~d~~~ 183 (197)
T 1zkc_A 173 VFVDPYEEADA 183 (197)
T ss_dssp EEECTTHHHHH
T ss_pred EEcCCcccHHH
Confidence 99999987765
No 4
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=1.5e-46 Score=357.68 Aligned_cols=169 Identities=30% Similarity=0.567 Sum_probs=149.9
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccC-----CCCCCCCCCCCccccccccccc
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTG-----DPTGTGTGGDSVYKFLYGEQAR 76 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~G-----d~~~~~~~~~~~~~~~~~~~~~ 76 (589)
.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+++|||||| |+++++.++.++|..+....+.
T Consensus 8 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~~~~~g~ 87 (201)
T 3bo7_A 8 YLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFPGGA 87 (201)
T ss_dssp EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCCSSTTCC
T ss_pred EEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCccccccccccCCC
Confidence 69999999999999999999999999999999999999999999999999999 9999999999999655555567
Q ss_pred ccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceee
Q 007792 77 FFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRI 156 (589)
Q Consensus 77 ~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I 156 (589)
.|++|+.+.|+|+.+|+||||+.++++++|||||||.+ +||||++|+|||+|++||+||++|+.++++.+++|..+|.|
T Consensus 88 ~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I 166 (201)
T 3bo7_A 88 PFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKS-CEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKV 166 (201)
T ss_dssp CBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBE
T ss_pred cccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEE
Confidence 89999889999999999999999999999999999998 69999999999999999999999999999999999999999
Q ss_pred cccccccCCCCChhh
Q 007792 157 KHTYILEDPFDDPAQ 171 (589)
Q Consensus 157 ~~~~vl~~p~~~~~~ 171 (589)
.+|+++.+||+++..
T Consensus 167 ~~~~v~~dPf~d~~~ 181 (201)
T 3bo7_A 167 EEIIVFKNPFEDARK 181 (201)
T ss_dssp EEEEEEECCC-----
T ss_pred EEEEEEcCCccCHHH
Confidence 999999999998765
No 5
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=5.5e-46 Score=350.29 Aligned_cols=157 Identities=39% Similarity=0.685 Sum_probs=148.1
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
|.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||++.+++.++.++|+ ..|++
T Consensus 39 ~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~gg~si~g-------~~~~d 111 (196)
T 2b71_A 39 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYG-------EYFED 111 (196)
T ss_dssp CEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTB-------SCBCC
T ss_pred cEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCCCCCccCC-------Ccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999987 67899
Q ss_pred ccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccc
Q 007792 81 EIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTY 160 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 160 (589)
|+.+.|+|+.+|+||||+.++++++||||||+.+ +||||++|+|||+|++||+||++|+.++++.+++|..+|+|.+|.
T Consensus 112 E~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~ 190 (196)
T 2b71_A 112 EINKELKHTGAGILSMSNNGPNTNSSQFFITLAP-LPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 190 (196)
T ss_dssp CCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred cccCCcCcCCCeEEEEccCCCCCcccEEEEECCC-CCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEE
Confidence 9888999999999999999999999999999998 699999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 007792 161 ILEDP 165 (589)
Q Consensus 161 vl~~p 165 (589)
|+.+|
T Consensus 191 i~~dP 195 (196)
T 2b71_A 191 TAVNA 195 (196)
T ss_dssp C----
T ss_pred EecCC
Confidence 99876
No 6
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=8.8e-46 Score=339.58 Aligned_cols=154 Identities=41% Similarity=0.688 Sum_probs=147.7
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
+.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||++.+++++++++|+ ..|++
T Consensus 6 ~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g-------~~~~d 78 (160)
T 2fu0_A 6 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWG-------NEFED 78 (160)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTS-------SCBCC
T ss_pred CEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCCCCcccC-------CCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999987 67899
Q ss_pred ccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccc
Q 007792 81 EIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTY 160 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 160 (589)
|+.+.|+|+.+|+||||+.++++++|||||++.+ +||||++|+|||+|++||+||++|+.++++.+++|.++|+|.+|.
T Consensus 79 E~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~-~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~ 157 (160)
T 2fu0_A 79 EFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVP-CPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIK 157 (160)
T ss_dssp CCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEE
T ss_pred cccCCcccCCceEEEEecCCCCCcccEEEEECCC-CCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEE
Confidence 9877899999999999999999999999999998 699999999999999999999999999999899999999999998
Q ss_pred cc
Q 007792 161 IL 162 (589)
Q Consensus 161 vl 162 (589)
++
T Consensus 158 v~ 159 (160)
T 2fu0_A 158 IN 159 (160)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 7
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=1.3e-45 Score=340.56 Aligned_cols=154 Identities=44% Similarity=0.751 Sum_probs=148.1
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
|.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||++.+++.++.++|+ ..|++
T Consensus 12 ~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g-------~~~~d 84 (166)
T 2x7k_A 12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYG-------KQFED 84 (166)
T ss_dssp SEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTS-------SCBCC
T ss_pred CEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCC-------Ccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999987 67899
Q ss_pred ccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccc
Q 007792 81 EIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTY 160 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 160 (589)
|+.+.|+|..+|+||||+.++++++|||||++.+ +||||++|+|||+|++||+||++|+.++++..++|.++|+|.+|.
T Consensus 85 E~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~-~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~ 163 (166)
T 2x7k_A 85 ELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAP-TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAY 163 (166)
T ss_dssp CCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEE
T ss_pred ccccccCCCCCeEEEEeeCCCCCccceEEEECCC-CCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEE
Confidence 9878999988999999999999999999999998 699999999999999999999999999999889999999999998
Q ss_pred cc
Q 007792 161 IL 162 (589)
Q Consensus 161 vl 162 (589)
|+
T Consensus 164 i~ 165 (166)
T 2x7k_A 164 PS 165 (166)
T ss_dssp EC
T ss_pred Ee
Confidence 85
No 8
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=3.9e-45 Score=345.47 Aligned_cols=163 Identities=41% Similarity=0.694 Sum_probs=154.7
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
|.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||++.+++.++.++|+ ..|++
T Consensus 12 ~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~gg~si~g-------~~f~d 84 (203)
T 2k7n_A 12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYG-------KQFED 84 (203)
T ss_dssp SEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSSCCCTTSC-------SCBCC
T ss_pred CEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCCCCCccCC-------Ccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999887 67899
Q ss_pred ccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccc
Q 007792 81 EIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTY 160 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 160 (589)
|+.+.|+|..+|+||||+.++++++|||||+|.+ +||||++|+|||+|++||+||++|+.++++..++|.++|+|.+|.
T Consensus 85 E~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~-~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~ 163 (203)
T 2k7n_A 85 ELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAP-TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAY 163 (203)
T ss_dssp CCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSC-CCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEE
T ss_pred cccccccCCCCeEEEEeeCCCCCcccEEEEEcCC-CCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEE
Confidence 9878999988999999999999999999999998 699999999999999999999999999999889999999999999
Q ss_pred cccCCCCChhh
Q 007792 161 ILEDPFDDPAQ 171 (589)
Q Consensus 161 vl~~p~~~~~~ 171 (589)
++..+..+...
T Consensus 164 v~~~~~s~~g~ 174 (203)
T 2k7n_A 164 PSGGGGSGGGS 174 (203)
T ss_dssp ECCCCCCCCCT
T ss_pred EEecCCCCCCC
Confidence 99887766554
No 9
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=1.4e-44 Score=336.20 Aligned_cols=153 Identities=43% Similarity=0.754 Sum_probs=146.0
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
+.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||++.++++++.++|+ ..|++
T Consensus 22 ~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g-------~~~~d 94 (176)
T 2a2n_A 22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWG-------GEFED 94 (176)
T ss_dssp SEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTS-------SCBCC
T ss_pred CEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCCCCCCCCcccC-------Ccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999987 67899
Q ss_pred ccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccC-CCCCcccceeeccc
Q 007792 81 EIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVD-EKNRPYKNIRIKHT 159 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~-~~~~p~~~i~I~~~ 159 (589)
|+.+.|+|+.+|+||||+.++++++|||||++.+ +||||++|+|||+|++||+||++|+.++++ .+++|..+|+|.+|
T Consensus 95 E~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v 173 (176)
T 2a2n_A 95 EFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVP-TPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 173 (176)
T ss_dssp CCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEE
T ss_pred ccccccccCCceEEEEEeCCCCCcccEEEEECCC-CCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEE
Confidence 9877899999999999999999999999999998 699999999999999999999999999998 68999999999998
Q ss_pred cc
Q 007792 160 YI 161 (589)
Q Consensus 160 ~v 161 (589)
.|
T Consensus 174 ~v 175 (176)
T 2a2n_A 174 TV 175 (176)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 10
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=9.6e-45 Score=350.77 Aligned_cols=164 Identities=39% Similarity=0.653 Sum_probs=150.3
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
+.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+++||||||+++++++++.++|. .+..|++
T Consensus 22 ~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~-----~g~~f~d 96 (232)
T 3bkp_A 22 GKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTF-----DGKPFDV 96 (232)
T ss_dssp CEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSCCCCCTT-----TTCCBCC
T ss_pred CEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCCCCcccc-----CCCccCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999882 1267899
Q ss_pred ccccCCCCCCCceEEEeccCC--------------CCCcceEEEEeCCCCCCCCCCcceEEEEecCHH--HHHHHhhCcc
Q 007792 81 EIRVDLKHAKTGTVAMASAGE--------------NLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLE--TLSRINESFV 144 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~g~--------------~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~--vl~~i~~~~~ 144 (589)
|+.+.|+|+.+|+||||+.++ ++++|||||||.+ +||||++|+|||+|+ ||+ +|++|+.+++
T Consensus 97 E~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~-~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t 174 (232)
T 3bkp_A 97 ETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLAR-ADVLNNAYTLFGKVT-GHTLYNLMKFNDLEV 174 (232)
T ss_dssp CCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSC-CGGGTTTSCEEEEEC-GGGHHHHHHHTTSCB
T ss_pred ccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCC-CcccCCCccEEEEEE-eCchHHHHHHHcCCc
Confidence 987889999999999999987 5999999999998 699999999999999 664 4899999999
Q ss_pred CCCCCcccceeecccccccCCCCChhh
Q 007792 145 DEKNRPYKNIRIKHTYILEDPFDDPAQ 171 (589)
Q Consensus 145 ~~~~~p~~~i~I~~~~vl~~p~~~~~~ 171 (589)
+.+++|+.+|+|.+|+++.+||++...
T Consensus 175 ~~~~~P~~~i~I~~~~vl~dPf~d~~~ 201 (232)
T 3bkp_A 175 GKEDRPMTPPFIKSVDVLWNPFEDLVP 201 (232)
T ss_dssp CGGGCBSSCCBEEEEEEEECCCTTCCC
T ss_pred CCCCCcCCCeEEEEEEEEcCChhhhhh
Confidence 999999999999999999999987664
No 11
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=2.9e-44 Score=336.28 Aligned_cols=158 Identities=44% Similarity=0.762 Sum_probs=148.9
Q ss_pred EEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCc
Q 007792 2 SVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDE 81 (589)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e 81 (589)
.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||++.+++.++.++|+ ..|++|
T Consensus 26 ~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g-------~~~~dE 98 (185)
T 2hq6_A 26 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYG-------APFKDE 98 (185)
T ss_dssp EEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTS-------SCBCCC
T ss_pred EEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCCCCcccC-------Cccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999987 578999
Q ss_pred cccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHH--HHHHhhCccCCCCCcccceeeccc
Q 007792 82 IRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLET--LSRINESFVDEKNRPYKNIRIKHT 159 (589)
Q Consensus 82 ~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~v--l~~i~~~~~~~~~~p~~~i~I~~~ 159 (589)
+.+.|+|+.+|+||||+.++++++|||||++.+ +|+||++|+|||+|+ ||+| +++|+.++++.+++|..+|+|.+|
T Consensus 99 ~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~-~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~ 176 (185)
T 2hq6_A 99 FHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGR-ADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176 (185)
T ss_dssp CBTTBCSCSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEE
T ss_pred cccCcccCCCeEEEEccCCCCCccceEEEECCC-CCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEE
Confidence 877899999999999999999999999999998 699999999999999 7766 478999999999999999999999
Q ss_pred ccccCCCCC
Q 007792 160 YILEDPFDD 168 (589)
Q Consensus 160 ~vl~~p~~~ 168 (589)
+++.+||++
T Consensus 177 ~v~~~Pf~d 185 (185)
T 2hq6_A 177 EVLFNPFDD 185 (185)
T ss_dssp EEEECTTC-
T ss_pred EEeCCCCCC
Confidence 999999975
No 12
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=1.1e-43 Score=333.61 Aligned_cols=151 Identities=37% Similarity=0.607 Sum_probs=141.3
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHH---------------hcCccCCceEEEeecCcccccCCCCCCCCCCCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLC---------------KIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDS 65 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~---------------~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~ 65 (589)
+.|+|+|++|+|+|+||++.||+||+||++|| +.+||+|+.||||+|+|||||||+.+++++++
T Consensus 24 ~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~G~gg~- 102 (191)
T 1w74_A 24 ATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP- 102 (191)
T ss_dssp EEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSSCCS-
T ss_pred eEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCCCCCCC-
Confidence 47999999999999999999999999999999 45799999999999999999999988777663
Q ss_pred cccccccccccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEec--CHHHHHHHhhCc
Q 007792 66 VYKFLYGEQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAE--GLETLSRINESF 143 (589)
Q Consensus 66 ~~~~~~~~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~--G~~vl~~i~~~~ 143 (589)
+ ..|++|+.+.|+|+.+|+||||+.++++|+||||||+.+ +||||++|+|||+|++ ||+||++|+.++
T Consensus 103 --g-------~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~-~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~ 172 (191)
T 1w74_A 103 --G-------YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGK-TPHLNRRHTIFGEVIDAESQRVVEAISKTA 172 (191)
T ss_dssp --S-------CCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEEEEECSHHHHHHHHHHHTSC
T ss_pred --C-------CccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCC-CcccCCCeeEEEEEEECCCHHHHHHHHcCC
Confidence 2 568999888999999999999999999999999999998 6999999999999999 999999999999
Q ss_pred cCCCCCcccceeecccccc
Q 007792 144 VDEKNRPYKNIRIKHTYIL 162 (589)
Q Consensus 144 ~~~~~~p~~~i~I~~~~vl 162 (589)
++..++|..+|+|.+|+|+
T Consensus 173 t~~~~~P~~~v~I~~~~i~ 191 (191)
T 1w74_A 173 TDGNDRPTDPVVIESITIS 191 (191)
T ss_dssp BCTTSCBSSCCEEEEEEEC
T ss_pred cCCCCCcCCCeEEEEEEEC
Confidence 9999999999999999874
No 13
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=6.4e-44 Score=335.24 Aligned_cols=155 Identities=38% Similarity=0.677 Sum_probs=145.2
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHh--cCc-cCCceEEEeecCcccccCC-CCCCCCCCCCcccccccccccccCCcc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCK--IKY-YNGCLFHTVQKDFTAQTGD-PTGTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-Y~g~~f~rv~~~~~iq~Gd-~~~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
|++|+|+|+||++.||+||+||++||+ .+| |+|+.||||+++||||||+ +.++++++.+||+ ..|++|
T Consensus 27 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g-------~~f~dE- 98 (188)
T 3ich_A 27 EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYG-------ERFPDE- 98 (188)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB-------SCBCCC-
T ss_pred EeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccC-------Cccccc-
Confidence 899999999999999999999999995 678 9999999999999999999 5688899999987 578899
Q ss_pred ccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccccc
Q 007792 83 RVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYIL 162 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~vl 162 (589)
.+.|+|+.+|+||||+.++++|+||||||+.+ +||||++|+|||+|++||+||++|+.++++..++|..+|+|.+|+++
T Consensus 99 ~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~-~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l 177 (188)
T 3ich_A 99 NFKLKHYGPGWVSMANAGKDTNGSQFFITTVK-TAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177 (188)
T ss_dssp CCCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred ccCcccCCCeEEEEccCCCCCcccEEEEECCC-CcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeEEE
Confidence 68899999999999999999999999999998 69999999999999999999999999999988999999999999988
Q ss_pred --cCCCCChh
Q 007792 163 --EDPFDDPA 170 (589)
Q Consensus 163 --~~p~~~~~ 170 (589)
++||+++.
T Consensus 178 ~~~~Pf~~~~ 187 (188)
T 3ich_A 178 EVEKPFAIAK 187 (188)
T ss_dssp EEEEEEECCC
T ss_pred ecCCCCCCCC
Confidence 67887654
No 14
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=5.7e-43 Score=326.88 Aligned_cols=148 Identities=40% Similarity=0.697 Sum_probs=139.2
Q ss_pred EecceeEEEEecCCCChhHHHHHHHHHh-----------cCccCCceEEEeecCcccccCCCC-CCCCCCCCcccccccc
Q 007792 6 VTSLGDIVVDLFVDKCPLTTKNFLKLCK-----------IKYYNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGE 73 (589)
Q Consensus 6 ~T~~G~i~ieL~~~~aP~~~~nF~~l~~-----------~~~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~ 73 (589)
.|++|+|+|+||++.||+||+||++||+ .+||+|+.||||+|+|||||||++ ++++++.++|+
T Consensus 20 ~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g----- 94 (179)
T 2wfi_A 20 NQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYG----- 94 (179)
T ss_dssp TEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTS-----
T ss_pred CccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCCCCcccC-----
Confidence 3899999999999999999999999996 568999999999999999999986 78889999987
Q ss_pred cccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccc
Q 007792 74 QARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKN 153 (589)
Q Consensus 74 ~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~ 153 (589)
..|++|. +.++|+.+|+||||+.++++|+||||||+.+ +||||++|+|||+|++||+||++|+.++++..++|..+
T Consensus 95 --~~f~dE~-~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~-~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~ 170 (179)
T 2wfi_A 95 --GFFEDES-FAVKHNKEFLLSMANRGKDTNGSQFFITTKP-TPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAE 170 (179)
T ss_dssp --SCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSC
T ss_pred --Ccccccc-cCcCcCCCeEEEEEeCCCCCcceEEEEEcCC-CcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCC
Confidence 5688884 6899999999999999999999999999998 69999999999999999999999999999999999999
Q ss_pred eeecccccc
Q 007792 154 IRIKHTYIL 162 (589)
Q Consensus 154 i~I~~~~vl 162 (589)
|+|.+|++|
T Consensus 171 v~I~~~G~l 179 (179)
T 2wfi_A 171 VRILSCGEL 179 (179)
T ss_dssp EEEEEEEEC
T ss_pred eEEEeCeeC
Confidence 999999875
No 15
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=8.3e-43 Score=325.56 Aligned_cols=147 Identities=40% Similarity=0.627 Sum_probs=138.7
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHhc--------C---ccCCceEEEeecCcccccCCCC-CCCCCCCCccccccccc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCKI--------K---YYNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQ 74 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~--------~---~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~ 74 (589)
|++|+|+|+||++.||+||+||++||++ + ||+|+.||||+|+|||||||++ ++++++.++|+
T Consensus 18 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g------ 91 (177)
T 1a58_A 18 NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYG------ 91 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSCCCCTTS------
T ss_pred EeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCCCCcccC------
Confidence 7899999999999999999999999985 3 8999999999999999999987 78899999987
Q ss_pred ccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccce
Q 007792 75 ARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNI 154 (589)
Q Consensus 75 ~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i 154 (589)
..|++|. +.++|+.+|+||||+.++++|+||||||+.+ +||||++|+|||+|++||+||++|+.++++..++|..+|
T Consensus 92 -~~f~dE~-~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~-~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v 168 (177)
T 1a58_A 92 -GMFDDEE-FVMKHDEPFVVSMANKGPNTNGSQFFITTTP-APHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADV 168 (177)
T ss_dssp -SCBCCCC-CCSCCCSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE
T ss_pred -CcccCcc-cCcccCCCeEEEEeeCCCCCceeEEEEECCC-CCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCe
Confidence 5688884 6889999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred eecccccc
Q 007792 155 RIKHTYIL 162 (589)
Q Consensus 155 ~I~~~~vl 162 (589)
+|.+|++|
T Consensus 169 ~I~~~G~l 176 (177)
T 1a58_A 169 VILNCGEL 176 (177)
T ss_dssp EEEEEEEE
T ss_pred EEEEeEEE
Confidence 99999986
No 16
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=5.1e-43 Score=324.02 Aligned_cols=151 Identities=39% Similarity=0.721 Sum_probs=140.7
Q ss_pred EEEE-EecceeEEEEecCCCChhHHHHHHHHH--hcCc-cCCceEEEeecCcccccCC-CCCCCCCCCCccccccccccc
Q 007792 2 SVLI-VTSLGDIVVDLFVDKCPLTTKNFLKLC--KIKY-YNGCLFHTVQKDFTAQTGD-PTGTGTGGDSVYKFLYGEQAR 76 (589)
Q Consensus 2 ~v~~-~T~~G~i~ieL~~~~aP~~~~nF~~l~--~~~~-Y~g~~f~rv~~~~~iq~Gd-~~~~~~~~~~~~~~~~~~~~~ 76 (589)
.|.+ .|++|+|+|+||++.||+||+||++|| +.+| |+|+.||||+|+||||||+ +.++++++.++|+ .
T Consensus 17 di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g-------~ 89 (172)
T 2haq_A 17 DVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYG-------E 89 (172)
T ss_dssp EEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSS-------S
T ss_pred EEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccC-------C
Confidence 4544 499999999999999999999999999 6789 9999999999999999999 5678889999887 5
Q ss_pred ccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceee
Q 007792 77 FFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRI 156 (589)
Q Consensus 77 ~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I 156 (589)
.|++| .+.|+|. +|+||||+.++++|+||||||+.+ +|+||++|+|||+|++||+||++|++++++..++|.++|+|
T Consensus 90 ~f~dE-~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~-~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I 166 (172)
T 2haq_A 90 KFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAP-TPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKI 166 (172)
T ss_dssp CBCCC-CCCSCCC-TTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEE
T ss_pred cccCc-CCCcccC-ceEEEEccCCCCCcccEEEEECCC-CCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEE
Confidence 68899 6889998 999999999999999999999998 69999999999999999999999999999988899999999
Q ss_pred cccccc
Q 007792 157 KHTYIL 162 (589)
Q Consensus 157 ~~~~vl 162 (589)
.+|++|
T Consensus 167 ~~~g~l 172 (172)
T 2haq_A 167 VASGEL 172 (172)
T ss_dssp EEEEEC
T ss_pred EEeEEC
Confidence 999875
No 17
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=327.65 Aligned_cols=153 Identities=39% Similarity=0.685 Sum_probs=142.1
Q ss_pred EEEE-EecceeEEEEecCCCChhHHHHHHHHHh-----------cCccCCceEEEeecCcccccCCCC-CCCCCCCCccc
Q 007792 2 SVLI-VTSLGDIVVDLFVDKCPLTTKNFLKLCK-----------IKYYNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYK 68 (589)
Q Consensus 2 ~v~~-~T~~G~i~ieL~~~~aP~~~~nF~~l~~-----------~~~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~ 68 (589)
.|.+ .|++|+|+||||++.||+||+||++||+ .+||+|+.||||+|+|||||||++ ++++++.+||+
T Consensus 25 di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G~gg~siyg 104 (192)
T 2he9_A 25 DIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYG 104 (192)
T ss_dssp EEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTS
T ss_pred EEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCCCCCCcccC
Confidence 3433 5899999999999999999999999996 468999999999999999999986 78899999987
Q ss_pred ccccccccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCC
Q 007792 69 FLYGEQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKN 148 (589)
Q Consensus 69 ~~~~~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~ 148 (589)
..|++|. +.|+|+.+|+||||+.++++|+||||||+.+ +||||++|+|||+|++||+||++|+.++++.++
T Consensus 105 -------~~f~dE~-~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~ 175 (192)
T 2he9_A 105 -------GYFKDEN-FILKHDRAFLLSMANRGKHTNGSQFFITTKP-APHLDGVHVVFGLVISGFEVIEQIENLKTDAAS 175 (192)
T ss_dssp -------SCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTS
T ss_pred -------CcccCcc-ccCCCCCCeEEEEEeCCCCCcceEEEEEcCC-CcccCCCccEEEEEEeCHHHHHHHHcCCcCCCC
Confidence 5688884 7899999999999999999999999999998 699999999999999999999999999999999
Q ss_pred Ccccceeeccccccc
Q 007792 149 RPYKNIRIKHTYILE 163 (589)
Q Consensus 149 ~p~~~i~I~~~~vl~ 163 (589)
+|..+|+|.+|+++.
T Consensus 176 ~P~~~v~I~~~g~l~ 190 (192)
T 2he9_A 176 RPYADVRVIDCGVLA 190 (192)
T ss_dssp CBSSCEEEEEEEECC
T ss_pred CCcCCeEEEEeEEEc
Confidence 999999999999974
No 18
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=1e-42 Score=324.54 Aligned_cols=147 Identities=35% Similarity=0.659 Sum_probs=139.3
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHhcCc--------cCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccccc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCKIKY--------YNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQARF 77 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~ 77 (589)
|++|+|+||||++.||+||+||++||++++ |+|+.||||+|+|||||||+. ++++++.++|+ ..
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g-------~~ 94 (177)
T 1mzw_A 22 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYR-------GP 94 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTS-------SC
T ss_pred eeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCccCC-------Cc
Confidence 679999999999999999999999999998 999999999999999999986 78889999887 56
Q ss_pred cCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeec
Q 007792 78 FGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIK 157 (589)
Q Consensus 78 ~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~ 157 (589)
|++|. +.|+|+.+|+||||+.++++++||||||+.+ +||||++|+|||+|++||+||++|++++++.+++|.++|+|.
T Consensus 95 f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~-~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~ 172 (177)
T 1mzw_A 95 FADEN-FKLRHSAPGLLSMANSGPSTNGCQFFITCSK-CDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVIS 172 (177)
T ss_dssp BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEE
T ss_pred ccCcc-cccccCCCCEEEEccCCCCCcceEEEEECCC-CCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEE
Confidence 88884 7899999999999999999999999999998 699999999999999999999999999999899999999999
Q ss_pred ccccc
Q 007792 158 HTYIL 162 (589)
Q Consensus 158 ~~~vl 162 (589)
+|++|
T Consensus 173 ~cG~l 177 (177)
T 1mzw_A 173 QCGEM 177 (177)
T ss_dssp EEEEC
T ss_pred eceeC
Confidence 99975
No 19
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=1.3e-42 Score=320.69 Aligned_cols=153 Identities=36% Similarity=0.613 Sum_probs=142.3
Q ss_pred CEEEEE-ecceeEEEEecCCCChhHHHHHHHHHh--cCc-cCCceEEEeecCcccccCC-CCCCCCCCCCcccccccccc
Q 007792 1 MSVLIV-TSLGDIVVDLFVDKCPLTTKNFLKLCK--IKY-YNGCLFHTVQKDFTAQTGD-PTGTGTGGDSVYKFLYGEQA 75 (589)
Q Consensus 1 ~~v~~~-T~~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-Y~g~~f~rv~~~~~iq~Gd-~~~~~~~~~~~~~~~~~~~~ 75 (589)
|+|.+. |++|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+||||||| +.+++.++.++|+
T Consensus 7 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g------- 79 (164)
T 3pmp_A 7 FNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYG------- 79 (164)
T ss_dssp EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTB-------
T ss_pred EEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCC-------
Confidence 567777 999999999999999999999999999 778 9999999999999999999 5688899999987
Q ss_pred cccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCccccee
Q 007792 76 RFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIR 155 (589)
Q Consensus 76 ~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~ 155 (589)
..|++| .+.++|+.+|+||||+.++++++|||||++.+ +||||++|+|||+|++||+||++|++++++ +++|..+|+
T Consensus 80 ~~~~dE-~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~-~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~ 156 (164)
T 3pmp_A 80 EKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVP-TSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIK 156 (164)
T ss_dssp SCBCCC-CCCSCCCSTTEEEECBSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEE
T ss_pred cccccc-ccccCcCCCcEEEEeeCCCCCcccEEEEECCC-ChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEE
Confidence 668888 68899999999999999999999999999998 699999999999999999999999999886 689999999
Q ss_pred eccccccc
Q 007792 156 IKHTYILE 163 (589)
Q Consensus 156 I~~~~vl~ 163 (589)
|.+|++|+
T Consensus 157 I~~cg~l~ 164 (164)
T 3pmp_A 157 ITDCGTVA 164 (164)
T ss_dssp EEEEEEC-
T ss_pred EEeCeEEC
Confidence 99999873
No 20
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=2.8e-42 Score=319.85 Aligned_cols=146 Identities=36% Similarity=0.625 Sum_probs=136.9
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHhc--Cc-cCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccccccCCcc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCKI--KY-YNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~--~~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
|++|+|+|+||++.||+||+||++||++ +| |+|+.||||+|+||||||++. ++++++.++|+ ..|++|.
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g-------~~f~dE~ 94 (172)
T 2cmt_A 22 GDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYG-------RKFDDEN 94 (172)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTB-------SCBCCCC
T ss_pred eecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCC-------Ccccccc
Confidence 8999999999999999999999999985 78 999999999999999999987 68889999887 5688884
Q ss_pred ccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccccc
Q 007792 83 RVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYIL 162 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~vl 162 (589)
+.|+|+.+|+||||+.++++++|||||++.+ +||||++|+|||+|++||+||++|+++++. +++|.++|+|.+|++|
T Consensus 95 -~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~-~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~~g~l 171 (172)
T 2cmt_A 95 -FQLRHEGFGVLSMANSGPNTNGSQFFICTTK-CDWLDGKHVVFGRVVDGQNVVKKMESVGSK-SGKVKEPVIISRCGEL 171 (172)
T ss_dssp -CCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHGGGGCCT-TCCCSSCEEEEEEEEE
T ss_pred -cCcccCCceEEEEeeCCCCCcccEEEEECCC-CCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCEEEEEeEeE
Confidence 6899999999999999999999999999998 699999999999999999999999998884 6899999999999987
No 21
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=3.4e-42 Score=317.68 Aligned_cols=146 Identities=40% Similarity=0.658 Sum_probs=137.2
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHh--cCc-cCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccccccCCcc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCK--IKY-YNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
|++|+|+|+||++.||+||+||++||+ .+| |+|+.||||+|+||||||+++ ++++++.++|+ ..|++|
T Consensus 15 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g-------~~f~dE- 86 (165)
T 2z6w_A 15 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYG-------SRFPDE- 86 (165)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTB-------SCBCCC-
T ss_pred EeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccC-------CcccCc-
Confidence 589999999999999999999999999 889 999999999999999999986 67888889887 568888
Q ss_pred ccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccccc
Q 007792 83 RVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYIL 162 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~vl 162 (589)
.+.|+|+.+|+||||+.++++++|||||++.+ +||||++|+|||+|++||+||++|+.+++ .+++|.++|+|.+|+++
T Consensus 87 ~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~-~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~g~l 164 (165)
T 2z6w_A 87 NFTLKHVGPGVLSMANAGPNTNGSQFFICTIK-TDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 164 (165)
T ss_dssp CCCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEEEC
T ss_pred ccccccCCCCEEEEeeCCCCCcccEEEEEcCC-CcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEEeEEE
Confidence 58899998999999999999999999999998 69999999999999999999999999885 67899999999999987
No 22
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=4.1e-42 Score=318.77 Aligned_cols=150 Identities=38% Similarity=0.657 Sum_probs=138.9
Q ss_pred EEEEec-----ceeEEEEecCCCChhHHHHHHHHHhc-Cc--------cCCceEEEeecCcccccCCCC-CCCCCCCCcc
Q 007792 3 VLIVTS-----LGDIVVDLFVDKCPLTTKNFLKLCKI-KY--------YNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVY 67 (589)
Q Consensus 3 v~~~T~-----~G~i~ieL~~~~aP~~~~nF~~l~~~-~~--------Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~ 67 (589)
|.|+++ +|+|+|+||++.||+||+||++||++ +| |+|+.||||+|+|||||||+. ++++++.++|
T Consensus 6 v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~ 85 (170)
T 1qng_A 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIY 85 (170)
T ss_dssp EEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred EEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCcccc
Confidence 555554 99999999999999999999999984 88 999999999999999999986 7888999998
Q ss_pred cccccccccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCC
Q 007792 68 KFLYGEQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEK 147 (589)
Q Consensus 68 ~~~~~~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~ 147 (589)
+ ..|++| .+.|+|+.+|+||||+.++++|+||||||+.+ +||||++|+|||+|++||+||++|+.+++ .+
T Consensus 86 g-------~~f~dE-~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~-~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~ 155 (170)
T 1qng_A 86 G-------RSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVP-CPWLDGKHVVFGKVIEGMNVVREMEKEGA-KS 155 (170)
T ss_dssp B-------SCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCC-TT
T ss_pred C-------Cccccc-ccccccCCCCEEEEeecCCCCcccEEEEECCC-CcccCCCeeEEEEEECCHHHHHHHHhCCC-CC
Confidence 7 568888 47899999999999999999999999999998 69999999999999999999999999999 67
Q ss_pred CCcccceeecccccc
Q 007792 148 NRPYKNIRIKHTYIL 162 (589)
Q Consensus 148 ~~p~~~i~I~~~~vl 162 (589)
++|..+|+|.+|++|
T Consensus 156 ~~P~~~v~I~~cG~l 170 (170)
T 1qng_A 156 GYVKRSVVITDCGEL 170 (170)
T ss_dssp CCCSSCEEEEEEEEC
T ss_pred CCCCCCeEEEeceeC
Confidence 899999999999875
No 23
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=5.6e-42 Score=318.77 Aligned_cols=147 Identities=37% Similarity=0.630 Sum_probs=136.7
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHhc--C--------ccCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCKI--K--------YYNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQA 75 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~--~--------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~ 75 (589)
|++|+|+|+||++.||+||+||++||++ + ||+|+.||||+|+|||||||+. ++++++.++|+
T Consensus 15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~siyg------- 87 (173)
T 2igv_A 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYG------- 87 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB-------
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCccCC-------
Confidence 4599999999999999999999999987 5 7999999999999999999987 78889999887
Q ss_pred cccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCccccee
Q 007792 76 RFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIR 155 (589)
Q Consensus 76 ~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~ 155 (589)
..|++|. +.|+|+.+|+||||+.++++|+||||||+.+ +||||++|+|||+|++||+||++|+.+++ .+++|..+|+
T Consensus 88 ~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~-~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~~v~ 164 (173)
T 2igv_A 88 EKFPDEN-FKEKHTGPGVLSMANAGPNTNGSQFFLCTVK-TEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCM 164 (173)
T ss_dssp SCBCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSCEE
T ss_pred CcccCcc-cccCCCCCeEEEEeeCCCCCcceEEEEEcCC-ccccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCCCCCEE
Confidence 5688884 7899999999999999999999999999998 69999999999999999999999999888 4689999999
Q ss_pred eccccccc
Q 007792 156 IKHTYILE 163 (589)
Q Consensus 156 I~~~~vl~ 163 (589)
|.+|++++
T Consensus 165 I~~~g~l~ 172 (173)
T 2igv_A 165 IADCGQLK 172 (173)
T ss_dssp EEEEEEEC
T ss_pred EEEeEEEc
Confidence 99999974
No 24
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=9.4e-42 Score=316.91 Aligned_cols=147 Identities=38% Similarity=0.627 Sum_probs=136.8
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHh--cCc-cCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccccccCCcc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCK--IKY-YNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
|++|+|+|+||++.||+||+||++||+ .+| |+|+.||||+|+||||||+++ ++++++.++|+ ..|++|
T Consensus 23 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g-------~~f~dE- 94 (173)
T 2r99_A 23 KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYG-------KKFDDE- 94 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTB-------SCBCCC-
T ss_pred ccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCC-------CcccCc-
Confidence 899999999999999999999999995 577 999999999999999999987 68888999887 568888
Q ss_pred ccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccccc
Q 007792 83 RVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYIL 162 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~vl 162 (589)
.+.|+|+.+|+||||+.++++++||||||+.+ +||||++|+|||+|++||+||++|+.+++. +++|.++|+|.+|++|
T Consensus 95 ~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~-~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~cG~l 172 (173)
T 2r99_A 95 NFILKHTGPGLLSMANSGPNTNGSQFFLTCDK-TDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVIIADCGEY 172 (173)
T ss_dssp CCCSCCCSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEEC
T ss_pred ccCcccCCCcEEEEccCCCCCcccEEEEECCC-CCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEEEeeeE
Confidence 47899999999999999999999999999998 699999999999999999999999998875 5899999999999987
Q ss_pred c
Q 007792 163 E 163 (589)
Q Consensus 163 ~ 163 (589)
.
T Consensus 173 ~ 173 (173)
T 2r99_A 173 V 173 (173)
T ss_dssp C
T ss_pred C
Confidence 3
No 25
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=3.2e-42 Score=319.69 Aligned_cols=151 Identities=26% Similarity=0.406 Sum_probs=137.0
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
|.|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+++||||||+++..... .+++ ..|++
T Consensus 4 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~~--~~~~-------~~~~~ 74 (167)
T 3s6m_A 4 SMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQ--KPTD-------APIAN 74 (167)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTTEE--CCCC-------CCBCC
T ss_pred cEEEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCCCC--CCCC-------CccCC
Confidence 79999999999999999999999999999999999999999999999999999998754321 2222 46888
Q ss_pred ccccCCCCCCCceEEEec-cCCCCCcceEEEEeCCCCCCCCCC--------cceEEEEecCHHHHHHHhhCccCC----C
Q 007792 81 EIRVDLKHAKTGTVAMAS-AGENLNASQFYMTLRDNLDYLDEK--------HTIFGEVAEGLETLSRINESFVDE----K 147 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~-~g~~~~~sqFfI~l~~~~~~ld~~--------~~vFG~Vv~G~~vl~~i~~~~~~~----~ 147 (589)
|..+.|+| .+|+||||+ .++++++|||||++.+ ++|||++ |+|||+|++||+||++|++++++. +
T Consensus 75 E~~~~l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~-~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~ 152 (167)
T 3s6m_A 75 EANNGLKN-DTYTIAMARTNDPHSATAQFFINVND-NEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQ 152 (167)
T ss_dssp CGGGCCCC-CTTEEEECCCSSTTCBCSCEEEESSC-CGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CB
T ss_pred cccccccC-CccEEEEecCCCCCCccceEEEEcCC-chhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccC
Confidence 88778887 799999999 6899999999999998 6999998 999999999999999999999987 6
Q ss_pred CCcccceeecccccc
Q 007792 148 NRPYKNIRIKHTYIL 162 (589)
Q Consensus 148 ~~p~~~i~I~~~~vl 162 (589)
++|+.+|+|.+|.||
T Consensus 153 ~~P~~~v~I~~~~il 167 (167)
T 3s6m_A 153 DVPNDDVVIEKAVVV 167 (167)
T ss_dssp TCBSSCCEEEEEEEC
T ss_pred CCcCCCeEEEEEEEC
Confidence 899999999999875
No 26
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=4.5e-42 Score=317.19 Aligned_cols=150 Identities=31% Similarity=0.504 Sum_probs=135.4
Q ss_pred EEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCCcc
Q 007792 3 VLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 3 v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||+++.. .+.++|+ ..|++|.
T Consensus 2 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~--~g~~~~g-------~~~~dE~ 72 (164)
T 1lop_A 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG--MKQKATK-------EPIKNEA 72 (164)
T ss_dssp EEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETT--TEECCCC-------CCBCCCC
T ss_pred EEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCcccC--CCcCCCC-------Ccccccc
Confidence 899999999999999999999999999999999999999999999999999998732 1334444 5789998
Q ss_pred ccCCCCCCCceEEEec-cCCCCCcceEEEEeCCCCCCCCCC--------cceEEEEecCHHHHHHHhhCccCC----CCC
Q 007792 83 RVDLKHAKTGTVAMAS-AGENLNASQFYMTLRDNLDYLDEK--------HTIFGEVAEGLETLSRINESFVDE----KNR 149 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~-~g~~~~~sqFfI~l~~~~~~ld~~--------~~vFG~Vv~G~~vl~~i~~~~~~~----~~~ 149 (589)
.+.|+| .+|+||||+ .++++++|||||++.+ +||||++ |+|||+|++||+||++|+.++++. .++
T Consensus 73 ~~~l~~-~~G~lsmA~~~~p~s~gSQFfI~~~~-~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~ 150 (164)
T 1lop_A 73 NNGLKN-TRGTLAMARTQAPHSATAQFFINVVD-NDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDV 150 (164)
T ss_dssp CSSCCC-CTTEEEECCCSSTTCBCSCEEEESSC-CGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEE
T ss_pred cccccc-CccEEEEeecCCCCCccceEEEEcCC-ccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCC
Confidence 777888 699999997 5899999999999998 6999998 999999999999999999999975 479
Q ss_pred cccceeeccccccc
Q 007792 150 PYKNIRIKHTYILE 163 (589)
Q Consensus 150 p~~~i~I~~~~vl~ 163 (589)
|..+|+|.+|.+++
T Consensus 151 P~~~v~I~~~~v~~ 164 (164)
T 1lop_A 151 PKEDVIIESVTVSE 164 (164)
T ss_dssp ESSCCEEEEEEECC
T ss_pred cCCCeEEEEEEEeC
Confidence 99999999999863
No 27
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=2.1e-42 Score=335.25 Aligned_cols=166 Identities=27% Similarity=0.448 Sum_probs=140.9
Q ss_pred CEEEEE-ecceeEEEEecCCCChhHHHHHHHHHhc-----------------C--c-cCCceEEEeecCcccccCC-CCC
Q 007792 1 MSVLIV-TSLGDIVVDLFVDKCPLTTKNFLKLCKI-----------------K--Y-YNGCLFHTVQKDFTAQTGD-PTG 58 (589)
Q Consensus 1 ~~v~~~-T~~G~i~ieL~~~~aP~~~~nF~~l~~~-----------------~--~-Y~g~~f~rv~~~~~iq~Gd-~~~ 58 (589)
|.|.|. |++|+|+|+||++.||+||+||++||++ + | |+|+.||||+++||||||| +.+
T Consensus 19 ~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~~~g 98 (234)
T 2ose_A 19 MDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNS 98 (234)
T ss_dssp EEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCCC--
T ss_pred EEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCccCC
Confidence 345555 9999999999999999999999999984 3 7 9999999999999999999 568
Q ss_pred CCCCCCCcccccccccccccCCccccCCCCCCCceEEEec----cCCCCCcceEEEEeCCC-----CCCCCCCcceEEEE
Q 007792 59 TGTGGDSVYKFLYGEQARFFGDEIRVDLKHAKTGTVAMAS----AGENLNASQFYMTLRDN-----LDYLDEKHTIFGEV 129 (589)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~vs~a~----~g~~~~~sqFfI~l~~~-----~~~ld~~~~vFG~V 129 (589)
+|+++.+||+... ....|+ .+.|+|+.+|+||||+ .++++++||||||+.+. +||||++|+|||+|
T Consensus 99 ~G~Gg~siyg~~~--~p~~f~---~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~V 173 (234)
T 2ose_A 99 NGSSAGTVYCDEP--IPPVFG---DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQV 173 (234)
T ss_dssp --CCCCCTTTTCC--BCCCCC---SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEE
T ss_pred CCCCCccccCCcc--Cccccc---CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEE
Confidence 8999999987320 001133 3579999999999999 99999999999999973 59999999999999
Q ss_pred ecCHHHHHHHhhCccCCCCCcccceeecccccccCCCCChhh
Q 007792 130 AEGLETLSRINESFVDEKNRPYKNIRIKHTYILEDPFDDPAQ 171 (589)
Q Consensus 130 v~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~vl~~p~~~~~~ 171 (589)
|+||+||++|+.++++..++|..+|+|.+|+++.+|+++++.
T Consensus 174 v~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~p~~~~~k 215 (234)
T 2ose_A 174 YGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLDSSQAQRK 215 (234)
T ss_dssp EECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCCHHHHCC-
T ss_pred eCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecCCcccccc
Confidence 999999999999999988999999999999999888766554
No 28
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=2.1e-41 Score=317.19 Aligned_cols=145 Identities=39% Similarity=0.663 Sum_probs=134.5
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHh--cCc--------cCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCK--IKY--------YNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQA 75 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~--~~~--------Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~ 75 (589)
|++|+|+|+||++.||+||+||++||+ .+| |+|+.||||+|+|||||||+. ++++++.++|+
T Consensus 31 t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~gg~si~g------- 103 (186)
T 2poy_A 31 TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYG------- 103 (186)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCCTTC-------
T ss_pred EecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCCCCccCC-------
Confidence 459999999999999999999999996 478 999999999999999999986 78889999987
Q ss_pred cccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCccccee
Q 007792 76 RFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIR 155 (589)
Q Consensus 76 ~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~ 155 (589)
..|++|. +.|+|+.+|+||||+.++++|+||||||+.+ +||||++|+|||+|++||+||++|+.+++ .+++|..+|+
T Consensus 104 ~~f~dE~-~~l~h~~~G~lsMAn~gpntngSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~~~P~~~v~ 180 (186)
T 2poy_A 104 SKFRDEN-FVYTHDAPFLLSMANAGPNTNGSQFFITTVP-CPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVC 180 (186)
T ss_dssp -CBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEE
T ss_pred CcccCcc-cccccCCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCCCCCEE
Confidence 5688884 7899999999999999999999999999998 69999999999999999999999999988 5789999999
Q ss_pred eccccc
Q 007792 156 IKHTYI 161 (589)
Q Consensus 156 I~~~~v 161 (589)
|.+|++
T Consensus 181 I~~cG~ 186 (186)
T 2poy_A 181 ITASGV 186 (186)
T ss_dssp EEEEEC
T ss_pred EEeCCC
Confidence 999974
No 29
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=2.4e-42 Score=320.55 Aligned_cols=147 Identities=39% Similarity=0.618 Sum_probs=111.7
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHh--cCc-cCCceEEEeecCcccccCC-CCCCCCCCCCcccccccccccccCCcc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCK--IKY-YNGCLFHTVQKDFTAQTGD-PTGTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-Y~g~~f~rv~~~~~iq~Gd-~~~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
|++|+|+|+||++.||+||+||++||+ .++ |+|+.||||+|+||||||+ +.++++++.++|+ ..|++|
T Consensus 19 T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g-------~~f~dE- 90 (172)
T 2c3b_A 19 TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYG-------DKFADE- 90 (172)
T ss_dssp CEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------------------------
T ss_pred cccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCC-------CcccCc-
Confidence 889999999999999999999999999 668 9999999999999999999 6788899999887 568888
Q ss_pred ccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEec--CHHHHHHHhhCccCCCC-Ccccceeeccc
Q 007792 83 RVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAE--GLETLSRINESFVDEKN-RPYKNIRIKHT 159 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~--G~~vl~~i~~~~~~~~~-~p~~~i~I~~~ 159 (589)
.+.++|+.+|+||||+.++++++||||||+.+ +||||++|+|||+|++ ||+||++|++++++... +|.++|+|.+|
T Consensus 91 ~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~-~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~c 169 (172)
T 2c3b_A 91 NFSRKHDKKGILSMANAGPNTNGSQFFITTAV-TSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNC 169 (172)
T ss_dssp --CHHHHHTCEEEEC---------CEEEECSC-CTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEE
T ss_pred ccccccCCCeEEEEeeCCCCCcccEEEEECCC-CCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeC
Confidence 67889989999999999999999999999998 6999999999999999 99999999999998765 99999999999
Q ss_pred ccc
Q 007792 160 YIL 162 (589)
Q Consensus 160 ~vl 162 (589)
++|
T Consensus 170 G~l 172 (172)
T 2c3b_A 170 GEL 172 (172)
T ss_dssp EEC
T ss_pred eeC
Confidence 875
No 30
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=1.9e-41 Score=313.59 Aligned_cols=151 Identities=28% Similarity=0.463 Sum_probs=135.0
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCCCCcccccccccccccCC
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQARFFGD 80 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (589)
..|+|+|++|+|+|+||++.||+||+||++||+.+||+|+.||||+|+||||||+++..+.+ ..++ ..|++
T Consensus 5 ~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~~--~~~g-------~~~~d 75 (166)
T 1v9t_A 5 PHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPN-------PPIKN 75 (166)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCCB--CCCC-------CCBCC
T ss_pred eEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCCC--CCCC-------Ccccc
Confidence 46999999999999999999999999999999999999999999999999999998865422 1222 45888
Q ss_pred ccccCCCCCCCceEEEecc-CCCCCcceEEEEeCCCCCCCCCC-----cceEEEEecCHHHHHHHhhCccCC----CCCc
Q 007792 81 EIRVDLKHAKTGTVAMASA-GENLNASQFYMTLRDNLDYLDEK-----HTIFGEVAEGLETLSRINESFVDE----KNRP 150 (589)
Q Consensus 81 e~~~~l~~~~~G~vs~a~~-g~~~~~sqFfI~l~~~~~~ld~~-----~~vFG~Vv~G~~vl~~i~~~~~~~----~~~p 150 (589)
|....|+| .+|+||||+. ++++++||||||+.+ +||||++ |+|||+|++||+||++|+.++++. .++|
T Consensus 76 E~~~~l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~-~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P 153 (166)
T 1v9t_A 76 EADNGLRN-TRGTIAMARTADKDSATSQFFINVAD-NAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVP 153 (166)
T ss_dssp CGGGSCCC-CTTEEEECCCSSTTCBCSCEEEESSC-CGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEE
T ss_pred cccccccC-CceEEEEeecCCCCCccceEEEEeCC-ccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCc
Confidence 97666766 6899999996 699999999999998 6999998 999999999999999999999976 4789
Q ss_pred ccceeecccccc
Q 007792 151 YKNIRIKHTYIL 162 (589)
Q Consensus 151 ~~~i~I~~~~vl 162 (589)
..+|+|.+|.++
T Consensus 154 ~~~v~I~~~~v~ 165 (166)
T 1v9t_A 154 SKPVVILSATVL 165 (166)
T ss_dssp SSCCBEEEEEEC
T ss_pred CCCeEEEEEEEe
Confidence 999999999986
No 31
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=3.9e-41 Score=315.56 Aligned_cols=152 Identities=38% Similarity=0.604 Sum_probs=138.9
Q ss_pred EEEEEec-----ceeEEEEecCCCChhHHHHHHHHHhcCc---cCCceEEEeecCcccccCCCC-CCCCCCCCccccccc
Q 007792 2 SVLIVTS-----LGDIVVDLFVDKCPLTTKNFLKLCKIKY---YNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYG 72 (589)
Q Consensus 2 ~v~~~T~-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~---Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~ 72 (589)
.|.|+|+ +|+|+|+||++.||+||+||++||++++ |+|+.||||+|+|||||||+. +++.++.++|+
T Consensus 24 ~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g---- 99 (184)
T 3rdd_A 24 TVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYG---- 99 (184)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB----
T ss_pred EEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCC----
Confidence 3677766 9999999999999999999999997755 999999999999999999954 78889999887
Q ss_pred ccccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCccc
Q 007792 73 EQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYK 152 (589)
Q Consensus 73 ~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~ 152 (589)
..|++| .+.++|+.+|+||||+.++++++|||||++.+ +|+||++|+|||+|++||+||++|+++++ .+++|..
T Consensus 100 ---~~~~de-~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~-~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~-~~g~P~~ 173 (184)
T 3rdd_A 100 ---EKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAK-TEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSK 173 (184)
T ss_dssp ---SCBCCC-CCCSCCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSS
T ss_pred ---CcccCc-ccccccCCCcEEEEEeCCCCCcccEEEEEeCC-chhhCCCceEEEEEecCHHHHHHHHhcCC-CCCCCcC
Confidence 567888 47899999999999999999999999999998 69999999999999999999999999886 4789999
Q ss_pred ceeeccccccc
Q 007792 153 NIRIKHTYILE 163 (589)
Q Consensus 153 ~i~I~~~~vl~ 163 (589)
+|+|.+|++|+
T Consensus 174 ~v~I~~cG~l~ 184 (184)
T 3rdd_A 174 KITIADCGQLE 184 (184)
T ss_dssp CEEEEEEEECC
T ss_pred CeEEEeCeEEC
Confidence 99999999974
No 32
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=2.9e-41 Score=324.50 Aligned_cols=147 Identities=34% Similarity=0.580 Sum_probs=138.3
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHhcC--------ccCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccccc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCKIK--------YYNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQARF 77 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~~--------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~ 77 (589)
|++|+|+||||++.||+||+||++||+++ +|+|+.||||+|+|||||||++ ++++++.+||+ ..
T Consensus 71 t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg-------~~ 143 (229)
T 1z81_A 71 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYG-------EK 143 (229)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTB-------SC
T ss_pred eecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCC-------Cc
Confidence 45999999999999999999999999987 7999999999999999999986 78899999987 56
Q ss_pred cCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEe--cCHHHHHHHhhCccCCC-CCcccce
Q 007792 78 FGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVA--EGLETLSRINESFVDEK-NRPYKNI 154 (589)
Q Consensus 78 ~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv--~G~~vl~~i~~~~~~~~-~~p~~~i 154 (589)
|++| .+.|+|+.+|+||||+.++++++||||||+.+ +||||++|+|||+|+ +||+||++|+.++++.. ++|.++|
T Consensus 144 f~dE-~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~-~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V 221 (229)
T 1z81_A 144 FDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKK-CEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPI 221 (229)
T ss_dssp CCCC-CCCSCCCSTTEEEECCSSSSCCCSCEEEESSC-CGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCE
T ss_pred cccc-ccccccCCCcEEEeccCCCCCcccEEEEECCC-CcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCe
Confidence 8888 47899999999999999999999999999998 799999999999999 99999999999999887 9999999
Q ss_pred eecccccc
Q 007792 155 RIKHTYIL 162 (589)
Q Consensus 155 ~I~~~~vl 162 (589)
+|.+|++|
T Consensus 222 ~I~~cG~l 229 (229)
T 1z81_A 222 NVVECGEL 229 (229)
T ss_dssp EEEEEEEC
T ss_pred EEEeCeeC
Confidence 99999975
No 33
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=6e-41 Score=315.54 Aligned_cols=148 Identities=40% Similarity=0.667 Sum_probs=139.0
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHhc--C-ccCCceEEEeecCcccccCCCC-CCCCCCCCcccccccccccccCCcc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCKI--K-YYNGCLFHTVQKDFTAQTGDPT-GTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~~--~-~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
|++|+|+|+||++.||+||+||++||++ + +|+|+.||||+|+||||||++. ++++++.++|+ ..|++|
T Consensus 24 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g-------~~f~de- 95 (185)
T 4fru_A 24 EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYG-------ERFPDE- 95 (185)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB-------SCBCCC-
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccC-------CccCcc-
Confidence 5699999999999999999999999976 5 7999999999999999999987 78889999887 568888
Q ss_pred ccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcccceeecccccc
Q 007792 83 RVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPYKNIRIKHTYIL 162 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~vl 162 (589)
.+.++|+.+|+||||+.++++++|||||++.+ +||||++|+|||+|++||+||++|+.++++.+++|..+|+|.+|+++
T Consensus 96 ~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~-~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l 174 (185)
T 4fru_A 96 NFKLKHYGPGWVSMANAGKDTNGSQFFITTVK-TAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174 (185)
T ss_dssp CCCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred ccccCcCCCeEEEEeeCCCCCcceEEEEEeCC-CcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEEceEE
Confidence 47899999999999999999999999999998 69999999999999999999999999999999999999999999987
Q ss_pred c
Q 007792 163 E 163 (589)
Q Consensus 163 ~ 163 (589)
.
T Consensus 175 ~ 175 (185)
T 4fru_A 175 E 175 (185)
T ss_dssp E
T ss_pred e
Confidence 3
No 34
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1e-40 Score=314.79 Aligned_cols=147 Identities=41% Similarity=0.664 Sum_probs=137.2
Q ss_pred ecceeEEEEecCCCChhHHHHHHHHHh--cCc-cCCceEEEeecCcccccCCC-CCCCCCCCCcccccccccccccCCcc
Q 007792 7 TSLGDIVVDLFVDKCPLTTKNFLKLCK--IKY-YNGCLFHTVQKDFTAQTGDP-TGTGTGGDSVYKFLYGEQARFFGDEI 82 (589)
Q Consensus 7 T~~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-Y~g~~f~rv~~~~~iq~Gd~-~~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (589)
|++|+|+|+||++.||+||+||++||+ .++ |+|+.||||+|+|||||||+ .+++.++.++|+ ..|++|
T Consensus 39 t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g-------~~f~dE- 110 (193)
T 3k2c_A 39 ESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYG-------EKFPDE- 110 (193)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTS-------SCBCCC-
T ss_pred EEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCC-------Cccccc-
Confidence 889999999999999999999999998 567 99999999999999999994 578889999887 568888
Q ss_pred ccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccCCCCCcc--cceeecccc
Q 007792 83 RVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVDEKNRPY--KNIRIKHTY 160 (589)
Q Consensus 83 ~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~~~~~p~--~~i~I~~~~ 160 (589)
.+.++|+.+|+||||+.++++++|||||+|.+ +|+||++|+|||+|++||+||++|++++++ .++|. .+|+|.+|+
T Consensus 111 ~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v~I~~cG 188 (193)
T 3k2c_A 111 NFELKHTKEGILSMANCGAHTNGSQFFITLGK-TQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRIEIRDCG 188 (193)
T ss_dssp CCCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCEEEEEEE
T ss_pred ccccccCCCcEEEEEeCCCCCCccEEEEECCC-CcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccEEEEEce
Confidence 68899999999999999999999999999998 699999999999999999999999999887 67999 999999999
Q ss_pred ccc
Q 007792 161 ILE 163 (589)
Q Consensus 161 vl~ 163 (589)
+|.
T Consensus 189 ~l~ 191 (193)
T 3k2c_A 189 VLG 191 (193)
T ss_dssp ECC
T ss_pred EeC
Confidence 985
No 35
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=1.1e-37 Score=328.62 Aligned_cols=154 Identities=38% Similarity=0.601 Sum_probs=143.6
Q ss_pred EEEEec-----ceeEEEEecCCCChhHHHHHHHHHhc--------C---ccCCceEEEeecCcccccCCCC-CCCCCCCC
Q 007792 3 VLIVTS-----LGDIVVDLFVDKCPLTTKNFLKLCKI--------K---YYNGCLFHTVQKDFTAQTGDPT-GTGTGGDS 65 (589)
Q Consensus 3 v~~~T~-----~G~i~ieL~~~~aP~~~~nF~~l~~~--------~---~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~ 65 (589)
|.|+|+ +|+|+|+||++.||+||+||+.||++ | ||+||.||||+|+|||||||++ ++|+++.+
T Consensus 18 v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g~~~ 97 (370)
T 1ihg_A 18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGES 97 (370)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCB
T ss_pred EEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCCCCC
Confidence 677776 89999999999999999999999997 6 7999999999999999999998 88999999
Q ss_pred cccccccccccccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCCCcceEEEEecCHHHHHHHhhCccC
Q 007792 66 VYKFLYGEQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDEKHTIFGEVAEGLETLSRINESFVD 145 (589)
Q Consensus 66 ~~~~~~~~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~~~~vFG~Vv~G~~vl~~i~~~~~~ 145 (589)
||+ ..|++| .+.++|+.+|+||||+.|+++|+||||||+.+ +||||++|||||+|++||+||++|..++++
T Consensus 98 ~~~-------~~~~~e-~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~-~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~ 168 (370)
T 1ihg_A 98 IYG-------EKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVP-TPHLDGKHVVFGQVIKGMGVAKILENVEVK 168 (370)
T ss_dssp TTB-------SCBCCC-CCCBCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCEE
T ss_pred CCC-------CCcCCC-cCCcCCCCCeEEEEeeCCCCCCCceEEEeCCC-CcccCCCceEEEEEecCHHHHHHHHcCCCC
Confidence 997 678899 46899999999999999999999999999998 699999999999999999999999999988
Q ss_pred CCCCcccceeecccccccCCC
Q 007792 146 EKNRPYKNIRIKHTYILEDPF 166 (589)
Q Consensus 146 ~~~~p~~~i~I~~~~vl~~p~ 166 (589)
. ++|..+|+|..|+++..+.
T Consensus 169 ~-~~P~~~v~I~~~g~l~~~~ 188 (370)
T 1ihg_A 169 G-EKPAKLCVIAECGELKEGD 188 (370)
T ss_dssp T-TEESSCEEEEEEEEECTTC
T ss_pred C-CccceeEEEEEEEEeccCc
Confidence 7 8999999999999986543
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=5e-35 Score=298.43 Aligned_cols=133 Identities=26% Similarity=0.395 Sum_probs=114.0
Q ss_pred EEEEEec--------ceeEEEEecCCCChhHHHHHHHHHhcCccCCceEEEeecCcccccCCCCCCCCCC----------
Q 007792 2 SVLIVTS--------LGDIVVDLFVDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGG---------- 63 (589)
Q Consensus 2 ~v~~~T~--------~G~i~ieL~~~~aP~~~~nF~~l~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~---------- 63 (589)
+|.|.|+ +|+|+|+||++.||+||+||++||+.+||+|+.|||| ++|||||||++++++++
T Consensus 172 ~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g~~~~ 250 (369)
T 3rfy_A 172 SVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTEKTRT 250 (369)
T ss_dssp EEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCSCCCCCCCS
T ss_pred EEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccCcccCcCcc
Confidence 5778886 9999999999999999999999999999999999999 99999999999877662
Q ss_pred -----------CCcccccccccccccCCc----cccCCCCCCCceEEEecc--CCCCCcceEEEEeCC------CCCCCC
Q 007792 64 -----------DSVYKFLYGEQARFFGDE----IRVDLKHAKTGTVAMASA--GENLNASQFYMTLRD------NLDYLD 120 (589)
Q Consensus 64 -----------~~~~~~~~~~~~~~~~~e----~~~~l~~~~~G~vs~a~~--g~~~~~sqFfI~l~~------~~~~ld 120 (589)
.++|+ ..|++| ..+.|+|+.+|+||||+. ++++++||||||+.+ .++|||
T Consensus 251 iP~E~~~~G~g~piyg-------~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LD 323 (369)
T 3rfy_A 251 VPLEIMVTGEKTPFYG-------STLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILD 323 (369)
T ss_dssp SSSSSCSSSSCCSCCC-------SSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSC
T ss_pred cCccccccCCCCCcCC-------CccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccC
Confidence 22222 223343 135788889999999998 899999999999942 379999
Q ss_pred CCcceEEEEecCHHHHHHHhhC
Q 007792 121 EKHTIFGEVAEGLETLSRINES 142 (589)
Q Consensus 121 ~~~~vFG~Vv~G~~vl~~i~~~ 142 (589)
++|+|||+|++||+||++|+..
T Consensus 324 gkytVFG~VveGmdVVdkI~~G 345 (369)
T 3rfy_A 324 GRYAVFGYVTDNEDFLADLKVG 345 (369)
T ss_dssp SCEEEEEEEEESTTGGGGCCTT
T ss_pred CCeeEEEEEecCHHHHHHHhCC
Confidence 9999999999999999999764
No 37
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.95 E-value=7.2e-27 Score=249.73 Aligned_cols=85 Identities=28% Similarity=0.497 Sum_probs=80.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.||+++|..+|++||.|+.|.|+.++.||+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98743
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=155.32 Aligned_cols=81 Identities=28% Similarity=0.522 Sum_probs=78.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
..++|||+|||+++|+++|.++|++||+|..|.|+.++.+|.++|||||+|.+.++|..||+.|||..|.|++|.|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 39
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=152.61 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=80.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.+|.++|||+|||+.+|+++|.++|++||.|..|.|+.++.||+++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
|...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9753
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=150.59 Aligned_cols=84 Identities=19% Similarity=0.385 Sum_probs=77.9
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEEEec
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFG-TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKM-DNALIDDRRIHVDFS 319 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G-~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l-~g~~i~gr~i~V~~a 319 (589)
.++|||+|||+.+|+++|.++|++|| +|..|.|+.++.||.++|||||+|.+.++|.+||+.| ++..|+|++|.|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999887 457899999999999
Q ss_pred cccccc
Q 007792 320 QSVSKL 325 (589)
Q Consensus 320 ~~~~~~ 325 (589)
.++.+.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 886554
No 41
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=6.8e-19 Score=147.46 Aligned_cols=81 Identities=21% Similarity=0.397 Sum_probs=75.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCC--eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc----eeCCeEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGT--VVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA----LIDDRRI 314 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~--v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~----~i~gr~i 314 (589)
.=+||||+|||+.+|+++|.++|++||. |..|.|+.|+.||+++|||||+|.+.++|..||+.|||. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 668999999999999999999999999999999999996 5999999
Q ss_pred EEEeccc
Q 007792 315 HVDFSQS 321 (589)
Q Consensus 315 ~V~~a~~ 321 (589)
.|+||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=140.87 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=77.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
++..+|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccc
Q 007792 320 QSV 322 (589)
Q Consensus 320 ~~~ 322 (589)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=5.5e-18 Score=138.19 Aligned_cols=80 Identities=26% Similarity=0.522 Sum_probs=77.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~ 322 (589)
.+|||+|||+.+++++|.++|++||.|..+.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999874
No 44
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=143.78 Aligned_cols=86 Identities=24% Similarity=0.418 Sum_probs=81.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++++..
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998744
No 45
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8e-18 Score=140.97 Aligned_cols=85 Identities=29% Similarity=0.447 Sum_probs=80.5
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
...++.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeccc
Q 007792 317 DFSQS 321 (589)
Q Consensus 317 ~~a~~ 321 (589)
.+|++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=4.9e-18 Score=139.14 Aligned_cols=82 Identities=28% Similarity=0.487 Sum_probs=78.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 007792 319 SQ 320 (589)
Q Consensus 319 a~ 320 (589)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=6.5e-18 Score=141.99 Aligned_cols=85 Identities=22% Similarity=0.412 Sum_probs=80.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
|.++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 007792 321 SVSKL 325 (589)
Q Consensus 321 ~~~~~ 325 (589)
+....
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 75543
No 48
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7e-18 Score=141.35 Aligned_cols=84 Identities=24% Similarity=0.407 Sum_probs=80.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
++.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+++++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 007792 320 QSVS 323 (589)
Q Consensus 320 ~~~~ 323 (589)
.+..
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8744
No 49
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=143.82 Aligned_cols=88 Identities=23% Similarity=0.361 Sum_probs=82.3
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
....+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred Eecccccc
Q 007792 317 DFSQSVSK 324 (589)
Q Consensus 317 ~~a~~~~~ 324 (589)
.++.+...
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987543
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=139.73 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=79.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
..++.++|||+|||+.+++++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|..|++.|||..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 007792 318 FSQ 320 (589)
Q Consensus 318 ~a~ 320 (589)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 51
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=141.45 Aligned_cols=84 Identities=23% Similarity=0.388 Sum_probs=79.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..||. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 98744
No 52
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=140.86 Aligned_cols=85 Identities=26% Similarity=0.383 Sum_probs=80.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98754
No 53
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=143.33 Aligned_cols=86 Identities=27% Similarity=0.481 Sum_probs=81.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||+.|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++.+..
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998744
No 54
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=3.1e-17 Score=142.60 Aligned_cols=86 Identities=27% Similarity=0.518 Sum_probs=81.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccccc
Q 007792 319 SQSVSK 324 (589)
Q Consensus 319 a~~~~~ 324 (589)
+.+...
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987543
No 55
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7e-18 Score=143.69 Aligned_cols=85 Identities=26% Similarity=0.363 Sum_probs=80.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
|++..
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98743
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=142.08 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=80.2
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc
Q 007792 236 ADIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVS--------AEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA 307 (589)
Q Consensus 236 ~~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~--------~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~ 307 (589)
....++.++|||+|||+.+|+++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|..||+.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344667899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeCCeEEEEEecc
Q 007792 308 LIDDRRIHVDFSQ 320 (589)
Q Consensus 308 ~i~gr~i~V~~a~ 320 (589)
.|.|+.|.|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999984
No 57
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=140.12 Aligned_cols=84 Identities=27% Similarity=0.398 Sum_probs=79.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++ +|+++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+++..
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98744
No 58
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.3e-18 Score=141.54 Aligned_cols=84 Identities=30% Similarity=0.529 Sum_probs=80.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSA-EIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~-~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.+.++|||+|||+.+|+++|.++|++||.|..| .|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98744
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=5.7e-18 Score=149.81 Aligned_cols=89 Identities=20% Similarity=0.353 Sum_probs=82.4
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 007792 236 ADIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIH 315 (589)
Q Consensus 236 ~~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~ 315 (589)
.....+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 33455678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccccc
Q 007792 316 VDFSQSVSK 324 (589)
Q Consensus 316 V~~a~~~~~ 324 (589)
|++|.+...
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999987543
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=9.4e-18 Score=145.93 Aligned_cols=86 Identities=29% Similarity=0.447 Sum_probs=81.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
..++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++++..
T Consensus 101 ~a~~~~ 106 (115)
T 2cpz_A 101 LKRSKN 106 (115)
T ss_dssp CCCCSC
T ss_pred EcCCCC
Confidence 998754
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.5e-18 Score=143.92 Aligned_cols=85 Identities=21% Similarity=0.376 Sum_probs=80.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
|.+..
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98743
No 62
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=143.02 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=81.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC------CceeCC
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMD------NALIDD 311 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~------g~~i~g 311 (589)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||..|| |..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 35567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEEEeccccc
Q 007792 312 RRIHVDFSQSVS 323 (589)
Q Consensus 312 r~i~V~~a~~~~ 323 (589)
+.|.|.++.+..
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998743
No 63
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=1.8e-18 Score=143.67 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=73.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFG--TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G--~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
.+|||+|||+.+|+++|+++|++|| .|..|.|+.++.+|+++|||||+|.+.++|.+||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 64
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-17 Score=142.31 Aligned_cols=84 Identities=31% Similarity=0.457 Sum_probs=79.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
...+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||..|++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 355678999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred ecccc
Q 007792 318 FSQSV 322 (589)
Q Consensus 318 ~a~~~ 322 (589)
++.+.
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 99764
No 65
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=140.39 Aligned_cols=84 Identities=23% Similarity=0.445 Sum_probs=78.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFK---TGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~---tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
++.++|||+|||+.+|+++|.++|++||.|..|.|+.++. |+.++|||||+|.+.++|..||..|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred Eeccccc
Q 007792 317 DFSQSVS 323 (589)
Q Consensus 317 ~~a~~~~ 323 (589)
.++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998744
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3.2e-17 Score=139.63 Aligned_cols=83 Identities=25% Similarity=0.457 Sum_probs=78.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++|| |..|.|+.++.+++++|||||+|.+.++|..|| .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45678999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98743
No 67
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=142.10 Aligned_cols=86 Identities=29% Similarity=0.492 Sum_probs=81.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||+.|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++++..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998744
No 68
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=143.25 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=80.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
..++.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 007792 318 FSQSV 322 (589)
Q Consensus 318 ~a~~~ 322 (589)
+++++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99764
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.6e-17 Score=143.27 Aligned_cols=85 Identities=22% Similarity=0.387 Sum_probs=80.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98643
No 70
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=3.1e-18 Score=145.16 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=79.2
Q ss_pred CCceEEEecCCC------CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC-eE
Q 007792 241 PENVLFVCKLNP------VTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD-RR 313 (589)
Q Consensus 241 ~~~~i~V~nL~~------~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g-r~ 313 (589)
..++|||+|||+ .+++++|.++|++||.|..|.|+.++.||+++|||||+|.+.++|.+||+.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEeccccc
Q 007792 314 IHVDFSQSVS 323 (589)
Q Consensus 314 i~V~~a~~~~ 323 (589)
|.|.+|.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998643
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=144.01 Aligned_cols=83 Identities=28% Similarity=0.448 Sum_probs=78.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. +|+++|||||+|.+.++|+.||..|||..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cccc
Q 007792 320 QSVS 323 (589)
Q Consensus 320 ~~~~ 323 (589)
++..
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8744
No 72
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=139.99 Aligned_cols=83 Identities=18% Similarity=0.366 Sum_probs=78.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKT-GDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~t-g~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
..+.++|||+|||+.+|+++|+++|++|| |..|.|+.++.+ |.++|||||+|.+.++|..|| .|||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45678999999999999999999999999 999999999887 999999999999999999999 999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++.+..
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998744
No 73
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=141.35 Aligned_cols=86 Identities=17% Similarity=0.427 Sum_probs=80.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeec-CCCCCcccEEEEEEcCHHHHHHHHHhc-CCceeCCeEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRD-FKTGDSLNYAFIEFENRQACERAYSKM-DNALIDDRRIH 315 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d-~~tg~~~g~aFV~f~~~~~a~~A~~~l-~g~~i~gr~i~ 315 (589)
..++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++.++|||||+|.+.++|..||..| ||..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3556789999999999999999999999999999999998 789999999999999999999999999 99999999999
Q ss_pred EEeccccc
Q 007792 316 VDFSQSVS 323 (589)
Q Consensus 316 V~~a~~~~ 323 (589)
|.++.+..
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998744
No 74
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=139.74 Aligned_cols=83 Identities=25% Similarity=0.465 Sum_probs=78.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ ++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456789999999999999999999999999999999997 889999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 98754
No 75
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=143.01 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=81.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeE--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVV--------SAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI 309 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~--------~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i 309 (589)
...+.++|||+|||+.+|+++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|..||..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 355678999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred CCeEEEEEecccccc
Q 007792 310 DDRRIHVDFSQSVSK 324 (589)
Q Consensus 310 ~gr~i~V~~a~~~~~ 324 (589)
.|+.|.|.++++...
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987543
No 76
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=3e-17 Score=140.77 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=77.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++ +|+++|||||+|.+.++|..||..|||..|.|+.|.|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3567899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cc
Q 007792 319 SQ 320 (589)
Q Consensus 319 a~ 320 (589)
|.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 77
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=2e-17 Score=143.96 Aligned_cols=80 Identities=31% Similarity=0.570 Sum_probs=74.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.++|||+|||+.+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|+.||+.|||..|+|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999999985 44899999999999999999999999999999999999976
Q ss_pred cc
Q 007792 322 VS 323 (589)
Q Consensus 322 ~~ 323 (589)
..
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 78
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=3.4e-17 Score=139.91 Aligned_cols=84 Identities=23% Similarity=0.393 Sum_probs=79.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC---eEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD---RRIH 315 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g---r~i~ 315 (589)
.++.++|||+|||+.+++++|.++|++||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4567999999999999999999999999999999999987 79999999999999999999999999999998 9999
Q ss_pred EEeccccc
Q 007792 316 VDFSQSVS 323 (589)
Q Consensus 316 V~~a~~~~ 323 (589)
|.+|.+..
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998744
No 79
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=4.4e-17 Score=134.13 Aligned_cols=80 Identities=29% Similarity=0.427 Sum_probs=75.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||+ +++..|+|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999995 588899999999998
Q ss_pred c
Q 007792 319 S 319 (589)
Q Consensus 319 a 319 (589)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 80
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=140.19 Aligned_cols=84 Identities=21% Similarity=0.424 Sum_probs=79.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeE-EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeE----
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVV-SAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRR---- 313 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~-~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~---- 313 (589)
..+.++|||+|||+.+++++|.++|++||.|. .|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEecccc
Q 007792 314 IHVDFSQSV 322 (589)
Q Consensus 314 i~V~~a~~~ 322 (589)
|.|.||++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999999863
No 81
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=140.75 Aligned_cols=85 Identities=24% Similarity=0.446 Sum_probs=79.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcc-CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCce-eCCeEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSR-FGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNAL-IDDRRIHV 316 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~-~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~-i~gr~i~V 316 (589)
..+.++|||+|||+.+|+++|.++|++ ||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 446789999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred Eecccccc
Q 007792 317 DFSQSVSK 324 (589)
Q Consensus 317 ~~a~~~~~ 324 (589)
.++.+...
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99976443
No 82
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=146.69 Aligned_cols=85 Identities=22% Similarity=0.404 Sum_probs=80.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+++++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
|.+..
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98754
No 83
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=3.6e-17 Score=135.20 Aligned_cols=80 Identities=23% Similarity=0.410 Sum_probs=77.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999889999999999999999999999 9999999999999999986
Q ss_pred c
Q 007792 322 V 322 (589)
Q Consensus 322 ~ 322 (589)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 84
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=1.7e-17 Score=147.29 Aligned_cols=87 Identities=31% Similarity=0.489 Sum_probs=81.8
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
...++.++|||+|||+.+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeccccc
Q 007792 317 DFSQSVS 323 (589)
Q Consensus 317 ~~a~~~~ 323 (589)
.++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998743
No 85
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=136.08 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=77.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC-cccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGD-SLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~-~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+..++. ++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458999999999999999999999999999999999887766 8999999999999999999999999999999999999
Q ss_pred ccc
Q 007792 320 QSV 322 (589)
Q Consensus 320 ~~~ 322 (589)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 86
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=4.7e-17 Score=149.54 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=80.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
|.+..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98744
No 87
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8e-17 Score=137.09 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=77.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+ ++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456799999999999999999999999999999999998544 68999999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998744
No 88
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=136.44 Aligned_cols=85 Identities=27% Similarity=0.495 Sum_probs=78.1
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
....+.++|||+|||+.+|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|..||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456779999999999999999999999999999999998754 38899999999999999999999999999999999
Q ss_pred Eeccccc
Q 007792 317 DFSQSVS 323 (589)
Q Consensus 317 ~~a~~~~ 323 (589)
.++.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2cq3_A 88 NNATARV 94 (103)
T ss_dssp EECCSSC
T ss_pred EEcccCC
Confidence 9998754
No 89
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=137.64 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=72.9
Q ss_pred CCCCCCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCce--eC
Q 007792 233 IPDADIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNAL--ID 310 (589)
Q Consensus 233 ~~~~~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~--i~ 310 (589)
+.+....+|..+|||+|||+.+|+++|.++|++||.|..|.|+. .+|||||+|.+.++|..|+..|++.. |.
T Consensus 12 ~~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 12 YDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp -----CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred ccccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 34455677889999999999999999999999999999999975 46899999999999999999999864 88
Q ss_pred CeEEEEEecccc
Q 007792 311 DRRIHVDFSQSV 322 (589)
Q Consensus 311 gr~i~V~~a~~~ 322 (589)
|++|.|+||+++
T Consensus 86 Gr~i~V~~S~~k 97 (100)
T 3r27_A 86 GHPAFVNYSTSQ 97 (100)
T ss_dssp TEEEEEEECSCS
T ss_pred CcEEEEEecccc
Confidence 999999999863
No 90
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=3.7e-17 Score=142.84 Aligned_cols=82 Identities=28% Similarity=0.475 Sum_probs=78.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|..||+.|||..|+|+.|.|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 007792 319 SQ 320 (589)
Q Consensus 319 a~ 320 (589)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 91
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=138.82 Aligned_cols=83 Identities=14% Similarity=0.285 Sum_probs=78.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.+..++|||+|||+.+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|+.||..|||..|.|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45678999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred ccc
Q 007792 319 SQS 321 (589)
Q Consensus 319 a~~ 321 (589)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 875
No 92
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=136.87 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=77.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++.++|||+|||+.+++++|+++|++||+|..|.|+.++. +.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44678999999999999999999999999999999999875 89999999999999999999999999999999999999
Q ss_pred ccc
Q 007792 319 SQS 321 (589)
Q Consensus 319 a~~ 321 (589)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 93
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=2.5e-17 Score=140.92 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=80.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee---CCeEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI---DDRRIH 315 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i---~gr~i~ 315 (589)
.++.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|..||..|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred EEeccccc
Q 007792 316 VDFSQSVS 323 (589)
Q Consensus 316 V~~a~~~~ 323 (589)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998743
No 94
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=150.11 Aligned_cols=82 Identities=15% Similarity=0.268 Sum_probs=77.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFG--TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G--~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..++|||+|||+++|+++|.++|++|| .|..|.|+.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
|.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9763
No 95
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.3e-17 Score=139.69 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=76.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++.++|||+|||+.+|+++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 44568999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccc
Q 007792 319 SQS 321 (589)
Q Consensus 319 a~~ 321 (589)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 96
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=137.70 Aligned_cols=83 Identities=28% Similarity=0.390 Sum_probs=78.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++ +++++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4567899999999999999999999999999999999986 599999999999999999999999999999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 9753
No 97
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=4.8e-17 Score=150.93 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=80.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 007792 319 SQSVSK 324 (589)
Q Consensus 319 a~~~~~ 324 (589)
+.+...
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987543
No 98
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=140.32 Aligned_cols=80 Identities=9% Similarity=0.195 Sum_probs=75.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
.+..+|||+|||+.+|+++|.++|++||+|..|.|+.++. |.++|||||+|.+.++|..||. ++|..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3568999999999999999999999999999999999977 9999999999999999999997 8999999999999998
Q ss_pred cc
Q 007792 320 QS 321 (589)
Q Consensus 320 ~~ 321 (589)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 75
No 99
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-17 Score=139.46 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=73.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC--CceeCCeEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMD--NALIDDRRIH 315 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~--g~~i~gr~i~ 315 (589)
.+++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|..||+.|+ +..|.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999999874 5999999999999999999886 4789999999
Q ss_pred EEeccccc
Q 007792 316 VDFSQSVS 323 (589)
Q Consensus 316 V~~a~~~~ 323 (589)
|.+|++..
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99998743
No 100
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.1e-17 Score=135.64 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=75.0
Q ss_pred CCceEEEecCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLH----TIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~----~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
..++|||+|||+.+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 46899999999999999999 99999999999999988765 789999999999999999999999999999999
Q ss_pred Eeccccc
Q 007792 317 DFSQSVS 323 (589)
Q Consensus 317 ~~a~~~~ 323 (589)
.+|++..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9998743
No 101
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=9.9e-17 Score=147.60 Aligned_cols=85 Identities=28% Similarity=0.420 Sum_probs=80.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+..+|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
|.+..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98743
No 102
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.1e-17 Score=138.84 Aligned_cols=84 Identities=25% Similarity=0.385 Sum_probs=79.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++.++|||+|||+.+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|..||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98754
No 103
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=5.6e-17 Score=131.34 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
....-|||+||++.+|+++|+++|.+||+|..+.|+. ++|||||+|.+.++|..|++.|||..|.|++|.|++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3467899999999999999999999999999999965 6799999999999999999999999999999999999
Q ss_pred c
Q 007792 320 Q 320 (589)
Q Consensus 320 ~ 320 (589)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.3e-17 Score=139.20 Aligned_cols=85 Identities=16% Similarity=0.270 Sum_probs=78.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCC-eEEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHhcC--CceeCCeEEE
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGT-VVSAEII-RDFKTGDSLNYAFIEFENRQACERAYSKMD--NALIDDRRIH 315 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~-v~~~~i~-~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~--g~~i~gr~i~ 315 (589)
.+.++|||+|||+.+|+++|.++|.+||. |..|.|+ .++.+|.++|||||+|.+.++|..||..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred EEecccccc
Q 007792 316 VDFSQSVSK 324 (589)
Q Consensus 316 V~~a~~~~~ 324 (589)
|.+|.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987543
No 105
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=9.2e-17 Score=138.29 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=76.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..+ +..|+|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999876 599999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++.+..
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998643
No 106
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-17 Score=141.54 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=79.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred cccc
Q 007792 321 SVSK 324 (589)
Q Consensus 321 ~~~~ 324 (589)
+...
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7543
No 107
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.6e-17 Score=141.31 Aligned_cols=81 Identities=26% Similarity=0.299 Sum_probs=77.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..|| .|||..|.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999999999999999999999999999 9999999999999999987
Q ss_pred cc
Q 007792 322 VS 323 (589)
Q Consensus 322 ~~ 323 (589)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 108
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-17 Score=137.05 Aligned_cols=81 Identities=22% Similarity=0.397 Sum_probs=76.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred c
Q 007792 320 Q 320 (589)
Q Consensus 320 ~ 320 (589)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 109
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-16 Score=134.07 Aligned_cols=83 Identities=28% Similarity=0.436 Sum_probs=77.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4467899999999999999999999999999999999999999999999999999999999997 57899999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98754
No 110
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=131.85 Aligned_cols=82 Identities=16% Similarity=0.278 Sum_probs=77.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.....+|||+|||+.+|+++|+++|++| .|..|.|+.+ .+|+++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457899999999999999999999999 9999999999 889999999999999999999999 999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+++.+
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98753
No 111
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.4e-17 Score=139.75 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=77.1
Q ss_pred CCCceEEEecCCCCCCHHHHH---HHhccCCCeEEEEEeecCCCC---CcccEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q 007792 240 PPENVLFVCKLNPVTEDEDLH---TIFSRFGTVVSAEIIRDFKTG---DSLNYAFIEFENRQACERAYSKMDNALIDDRR 313 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~---~~F~~~G~v~~~~i~~d~~tg---~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~ 313 (589)
.+.++|||+|||+.+++++|. ++|++||+|..|.|+.+..++ .++|||||+|.+.++|+.||+.|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356899999999999999999 999999999999999887654 45699999999999999999999999999999
Q ss_pred EEEEeccccc
Q 007792 314 IHVDFSQSVS 323 (589)
Q Consensus 314 i~V~~a~~~~ 323 (589)
|.|.+|.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998754
No 112
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=9e-17 Score=133.71 Aligned_cols=83 Identities=25% Similarity=0.326 Sum_probs=77.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++.++|||+|||+.+++++|+++|++||.|..|.|+. .++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999987 4788999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+++..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98743
No 113
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=135.52 Aligned_cols=82 Identities=23% Similarity=0.425 Sum_probs=75.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|..||+.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999654 55889999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+++..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98743
No 114
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=2.8e-17 Score=131.27 Aligned_cols=75 Identities=24% Similarity=0.391 Sum_probs=72.3
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 244 VLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 244 ~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
+|||+|||+.+|+++|.++|++||+|..|.|+.++.+|.++|||||+|.+.++|++|++ |||..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999996 9999999999999875
No 115
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=139.39 Aligned_cols=83 Identities=19% Similarity=0.364 Sum_probs=75.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecC-CCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDF-KTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~-~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
...+.++|||+|||+.+++++|.++|++|| |..|.|+.++ .+|+++|||||+|.+.++|..|| .|||..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999998 68999999999999999999999 89999999999999
Q ss_pred Eecccc
Q 007792 317 DFSQSV 322 (589)
Q Consensus 317 ~~a~~~ 322 (589)
.++++.
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999864
No 116
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=9.3e-17 Score=137.28 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=75.6
Q ss_pred CCCCceEEEecCCCCC------CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCe
Q 007792 239 KPPENVLFVCKLNPVT------EDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDR 312 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~------te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr 312 (589)
....++|||+|||+.+ |+++|..+|++||.|..|.|+ ..+|+++|||||+|.+.++|..||..|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3346899999999999 789999999999999999988 47899999999999999999999999999999998
Q ss_pred -EEEEEecccc
Q 007792 313 -RIHVDFSQSV 322 (589)
Q Consensus 313 -~i~V~~a~~~ 322 (589)
+|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999999753
No 117
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=134.98 Aligned_cols=78 Identities=27% Similarity=0.342 Sum_probs=72.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC-----eEE
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD-----RRI 314 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g-----r~i 314 (589)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|+.||+.|||..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35689999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred EEEecccccc
Q 007792 315 HVDFSQSVSK 324 (589)
Q Consensus 315 ~V~~a~~~~~ 324 (589)
.|++|.+...
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987443
No 118
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=141.67 Aligned_cols=83 Identities=17% Similarity=0.341 Sum_probs=74.7
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLH----TIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRI 314 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~----~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i 314 (589)
.+|.++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|..||..|||..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4567899999999999999876 6999999999988753 67899999999999999999999999999999999
Q ss_pred EEEecccccc
Q 007792 315 HVDFSQSVSK 324 (589)
Q Consensus 315 ~V~~a~~~~~ 324 (589)
.|.||++...
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987443
No 119
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=138.70 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=77.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||.. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 347999999999999999999999999999999999999999999999999999999999987 9999999999999998
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
+..
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 754
No 120
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-16 Score=132.31 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=72.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc--CCceeCCeEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKM--DNALIDDRRIH 315 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l--~g~~i~gr~i~ 315 (589)
..+|.++|||+|||+.+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|..|+..| ++..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3567899999999999999999999999999999988764 699999999999999999977 57889999999
Q ss_pred EEeccccc
Q 007792 316 VDFSQSVS 323 (589)
Q Consensus 316 V~~a~~~~ 323 (589)
|.||++..
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 99998644
No 121
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=135.52 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=72.3
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC--ceeCCeEEE
Q 007792 239 KPPENVLFVCKLNP-VTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDN--ALIDDRRIH 315 (589)
Q Consensus 239 ~~~~~~i~V~nL~~-~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g--~~i~gr~i~ 315 (589)
..|..+|||+|||+ .+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|..||+.||+ ..|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 44788999999999 9999999999999999999999864 48999999999999999999886 469999999
Q ss_pred EEecccccc
Q 007792 316 VDFSQSVSK 324 (589)
Q Consensus 316 V~~a~~~~~ 324 (589)
|++|+....
T Consensus 86 V~~a~~~~~ 94 (102)
T 1x4d_A 86 VHLSQKYKR 94 (102)
T ss_dssp EEEECCCTT
T ss_pred EEECCCCCC
Confidence 999986443
No 122
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=138.87 Aligned_cols=84 Identities=11% Similarity=0.195 Sum_probs=77.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTV-VSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v-~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
...+..+|||+|||+.+|+++|+++|++||.| ..|.|+.++ +|+++|||||+|.+.++|..||.. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999997 899999999999999999999976 999999999999
Q ss_pred Eeccccc
Q 007792 317 DFSQSVS 323 (589)
Q Consensus 317 ~~a~~~~ 323 (589)
.++.+..
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998643
No 123
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=132.71 Aligned_cols=82 Identities=21% Similarity=0.397 Sum_probs=74.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
...+.++|||+|||+.+|+++|+++|++||.| .|+.+ .+++++|||||+|.+.++|+.||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45578999999999999999999999999987 56665 688999999999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++.+..
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998743
No 124
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=2.1e-16 Score=139.35 Aligned_cols=84 Identities=26% Similarity=0.385 Sum_probs=79.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4467899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
|.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98643
No 125
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=2.4e-16 Score=138.92 Aligned_cols=81 Identities=26% Similarity=0.417 Sum_probs=77.3
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999999999999999999999999999 8999999999999999986
Q ss_pred cc
Q 007792 322 VS 323 (589)
Q Consensus 322 ~~ 323 (589)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 126
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=141.49 Aligned_cols=82 Identities=28% Similarity=0.474 Sum_probs=77.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
..++.++|||+|||+.+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 007792 318 FS 319 (589)
Q Consensus 318 ~a 319 (589)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 127
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.4e-17 Score=136.62 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=74.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~ 322 (589)
++|||+|||+.+++++|.++|++||+|..|.|+.++.+|.++|||||+|.+.+ |..|+..|||..|.|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999874
Q ss_pred cc
Q 007792 323 SK 324 (589)
Q Consensus 323 ~~ 324 (589)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 128
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-17 Score=146.10 Aligned_cols=84 Identities=18% Similarity=0.376 Sum_probs=79.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc----eeCCe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVS--AEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA----LIDDR 312 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~--~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~----~i~gr 312 (589)
..+.++|||+|||+.+|+++|+++|++||.|.. |.|+.++.||+++|||||+|.+. +|..||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEeccccc
Q 007792 313 RIHVDFSQSVS 323 (589)
Q Consensus 313 ~i~V~~a~~~~ 323 (589)
.|.|.++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998743
No 129
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=138.28 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=73.6
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC--ceeCCeEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDN--ALIDDRRI 314 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g--~~i~gr~i 314 (589)
...+|.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|++ ..|.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34567899999999999999999999999999999999874 69999999999999999998874 68999999
Q ss_pred EEEeccccc
Q 007792 315 HVDFSQSVS 323 (589)
Q Consensus 315 ~V~~a~~~~ 323 (589)
.|.+|++..
T Consensus 100 ~V~~a~~k~ 108 (119)
T 2ad9_A 100 YIQFSNHKE 108 (119)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCCC
Confidence 999998744
No 130
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.6e-17 Score=130.17 Aligned_cols=76 Identities=22% Similarity=0.397 Sum_probs=73.4
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
++|||+|||+.+++++|.++|++||+|..|.|+.++.+|.++|||||+|.+.++|..|+..|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999987
No 131
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=134.19 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=74.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+..+|||+|||+.+|+++|+++|++||.| .|.|+.++ +|+++|||||+|.+.++|++|| .||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 4567899999999999999999999999954 99999997 8999999999999999999999 5799999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
+.+.
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8763
No 132
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=135.93 Aligned_cols=84 Identities=27% Similarity=0.485 Sum_probs=77.1
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
....+.++|||+|||+.+|+++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|..|+..|||..|+|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 335567899999999999999999999999999999999874 348999999999999999999999999999999999
Q ss_pred Eecccc
Q 007792 317 DFSQSV 322 (589)
Q Consensus 317 ~~a~~~ 322 (589)
.+++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999864
No 133
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=7e-16 Score=131.28 Aligned_cols=78 Identities=27% Similarity=0.494 Sum_probs=72.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+ ++||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3467899999999999999999999999999999986 36999999999999999999999999999999999
Q ss_pred cccccc
Q 007792 319 SQSVSK 324 (589)
Q Consensus 319 a~~~~~ 324 (589)
+.+...
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 987544
No 134
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=135.20 Aligned_cols=82 Identities=23% Similarity=0.492 Sum_probs=76.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee--------C
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI--------D 310 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i--------~ 310 (589)
..+.++|||+|||+.+|+++|..+|.+||.|..|.|+.++ ++.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3467899999999999999999999999999999999997 899999999999999999999999999999 5
Q ss_pred CeEEEEEeccc
Q 007792 311 DRRIHVDFSQS 321 (589)
Q Consensus 311 gr~i~V~~a~~ 321 (589)
+++|.|.||.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999975
No 135
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.7e-16 Score=133.29 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=75.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVS-AEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~-~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
..+..+|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+|+++|||||+|.+.++|..||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999997 888888 8899999999999999999999986 9999999999999
Q ss_pred ecccc
Q 007792 318 FSQSV 322 (589)
Q Consensus 318 ~a~~~ 322 (589)
++.+.
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98753
No 136
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=1.5e-16 Score=155.39 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=77.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFG--TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G--~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..++|||+||++.+|+++|+++|++|| .|+.|.|+.++.||+++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
|++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9763
No 137
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.3e-16 Score=126.54 Aligned_cols=76 Identities=28% Similarity=0.517 Sum_probs=71.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKM-DNALIDDRRIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l-~g~~i~gr~i~V~ 317 (589)
.++.++|||+|||+.+|+++|.++|++||.|..|.|+. ++|||||+|.+.++|..|+..| +|..|.|+.|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 45678999999999999999999999999999999986 4699999999999999999988 9999999999999
Q ss_pred ecc
Q 007792 318 FSQ 320 (589)
Q Consensus 318 ~a~ 320 (589)
||+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 138
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=2.7e-16 Score=135.41 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=72.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFG-TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G-~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
.+...+|||+|||+.+|+++|+++|++|| .|..+.|+. ..++|||||+|.+.++|+.||+.|||..|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 33568999999999999999999999999 899998854 2478999999999999999999999999999999999
Q ss_pred ecccc
Q 007792 318 FSQSV 322 (589)
Q Consensus 318 ~a~~~ 322 (589)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 99753
No 139
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=128.77 Aligned_cols=82 Identities=27% Similarity=0.466 Sum_probs=73.7
Q ss_pred CCCCCCCCCceEEEecCCCCCCHHHHHHHhccC--CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC
Q 007792 234 PDADIKPPENVLFVCKLNPVTEDEDLHTIFSRF--GTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD 311 (589)
Q Consensus 234 ~~~~~~~~~~~i~V~nL~~~~te~~L~~~F~~~--G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g 311 (589)
+.....++.++|||+|||+.+|+++|+.+|++| |.|..|.++ +|||||+|.+.++|..||..|||..|.|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 7 GDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp CCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred ccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 334445677999999999999999999999999 999998874 4799999999999999999999999999
Q ss_pred eEEEEEeccccc
Q 007792 312 RRIHVDFSQSVS 323 (589)
Q Consensus 312 r~i~V~~a~~~~ 323 (589)
+.|.|.++++..
T Consensus 79 ~~l~v~~a~~~~ 90 (99)
T 2cpd_A 79 SPIEVTLAKPVD 90 (99)
T ss_dssp EEEEEECCCCCC
T ss_pred cEEEEEECCCCC
Confidence 999999998754
No 140
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.1e-16 Score=131.28 Aligned_cols=82 Identities=27% Similarity=0.481 Sum_probs=75.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999874 677888888999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+++..
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98744
No 141
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=7.8e-17 Score=144.30 Aligned_cols=85 Identities=28% Similarity=0.420 Sum_probs=80.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+++++|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+++..
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98743
No 142
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=133.00 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=72.3
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC--ceeCCeEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDN--ALIDDRRI 314 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g--~~i~gr~i 314 (589)
...+|..+|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|++.|++ ..|.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34567899999999999999999999999999999998763 68999999999999999998875 45999999
Q ss_pred EEEeccccc
Q 007792 315 HVDFSQSVS 323 (589)
Q Consensus 315 ~V~~a~~~~ 323 (589)
.|+|+++..
T Consensus 84 ~V~~a~~~~ 92 (104)
T 1wex_A 84 FFNYSTSKR 92 (104)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCcc
Confidence 999998643
No 143
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=2.3e-16 Score=137.83 Aligned_cols=82 Identities=22% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGT---VVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~---v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
...++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||+ |||..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35689999999999999999999999999 89999999976 9999999999999999999998 9999999999999
Q ss_pred Eeccccc
Q 007792 317 DFSQSVS 323 (589)
Q Consensus 317 ~~a~~~~ 323 (589)
.++....
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997644
No 144
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.7e-16 Score=131.33 Aligned_cols=83 Identities=25% Similarity=0.458 Sum_probs=75.3
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 237 DIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 237 ~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
...++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34556789999999999999999999999999999999753 689999999999999999999999999999999
Q ss_pred Eeccccccc
Q 007792 317 DFSQSVSKL 325 (589)
Q Consensus 317 ~~a~~~~~~ 325 (589)
.++.+....
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpj_A 84 RFACHSASL 92 (99)
T ss_dssp EESSCCSCC
T ss_pred EEcCCCCCC
Confidence 999875543
No 145
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-17 Score=138.55 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=76.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+..+|||+|||+.+|+++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|..||+ |||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999888 667777789999999999999999999998 999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+++..
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98743
No 146
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.3e-16 Score=128.09 Aligned_cols=78 Identities=26% Similarity=0.497 Sum_probs=72.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++.++|||+|||+.+|+++|.++|++||.|..|.|+ +|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467899999999999999999999999999999997 48999999999999999999999999999999999
Q ss_pred cccccc
Q 007792 319 SQSVSK 324 (589)
Q Consensus 319 a~~~~~ 324 (589)
+.+...
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 147
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.9e-16 Score=127.45 Aligned_cols=78 Identities=26% Similarity=0.548 Sum_probs=72.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+. +||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999964 5999999999999999999999999999999999
Q ss_pred cccccc
Q 007792 319 SQSVSK 324 (589)
Q Consensus 319 a~~~~~ 324 (589)
+++...
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987543
No 148
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=129.71 Aligned_cols=72 Identities=24% Similarity=0.397 Sum_probs=67.8
Q ss_pred ceEEEecCCCCC------CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCe-EEE
Q 007792 243 NVLFVCKLNPVT------EDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDR-RIH 315 (589)
Q Consensus 243 ~~i~V~nL~~~~------te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr-~i~ 315 (589)
++|||+|||+.+ |+++|.++|++||+|..|.|+ +.+|+++|||||+|.+.++|..|+..|||..|+|+ +|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 46889999999999999999999999999999999 887
Q ss_pred E
Q 007792 316 V 316 (589)
Q Consensus 316 V 316 (589)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 149
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.6e-17 Score=139.76 Aligned_cols=85 Identities=24% Similarity=0.404 Sum_probs=73.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++.++|||+|||+.+|+++|.++|++||.|..+.+..+..+++++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999984332222223788999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
|.+..
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98744
No 150
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-16 Score=130.72 Aligned_cols=79 Identities=32% Similarity=0.539 Sum_probs=73.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC--CeEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID--DRRIHV 316 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~--gr~i~V 316 (589)
.++.++|||+|||+.+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|+.|+..|||..|. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999998753 689999999999999999999999999 999999
Q ss_pred Eeccccc
Q 007792 317 DFSQSVS 323 (589)
Q Consensus 317 ~~a~~~~ 323 (589)
.++++..
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998743
No 151
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-16 Score=140.97 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=76.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
.+..+|||+|||+.+|+++|.++|..||.|..+.++.+..+|+++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999999887777777899999999999999999999998 9999999999999999
Q ss_pred ccc
Q 007792 320 QSV 322 (589)
Q Consensus 320 ~~~ 322 (589)
.+.
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 763
No 152
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=2.4e-16 Score=132.47 Aligned_cols=82 Identities=22% Similarity=0.451 Sum_probs=75.3
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLH----TIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRI 314 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~----~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i 314 (589)
.++.++|||+|||+.+++++|. ++|++||.|..|.|+. +|.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4577999999999999999999 9999999999998873 56788999999999999999999999999999999
Q ss_pred EEEeccccc
Q 007792 315 HVDFSQSVS 323 (589)
Q Consensus 315 ~V~~a~~~~ 323 (589)
.|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 153
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=2.5e-16 Score=140.70 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=76.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGT---VVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~---v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
...++|||+|||+++|+++|+++|++||. |..|.|+.++. |+++|||||+|.+.++|.+||+ |||..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45689999999999999999999999999 88999999977 9999999999999999999998 9999999999999
Q ss_pred Eeccccc
Q 007792 317 DFSQSVS 323 (589)
Q Consensus 317 ~~a~~~~ 323 (589)
.++.+..
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9987643
No 154
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=132.39 Aligned_cols=79 Identities=14% Similarity=0.388 Sum_probs=73.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
++.++|||+|||+.+|+++|..+|++||.|..|.|+.+ +|||||+|.+.++|..||..|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35689999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 320 QSVSK 324 (589)
Q Consensus 320 ~~~~~ 324 (589)
++...
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87543
No 155
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.1e-15 Score=128.55 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=71.3
Q ss_pred CCCCCceEEEecCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 238 IKPPENVLFVCKLNP-VTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~-~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
..++.++|||+|||+ .+++++|..+|++||.|..|.|. +|||||+|.+.++|..|+..|||..|.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 355789999999998 99999999999999999999983 589999999999999999999999999999999
Q ss_pred Eecccc
Q 007792 317 DFSQSV 322 (589)
Q Consensus 317 ~~a~~~ 322 (589)
+++++.
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999764
No 156
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=130.65 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=72.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
..+..++|||+|||+.+|+++|+.+|++||.|. +.++.+ .++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345578999999999999999999999999997 666653 578999999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++++..
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998743
No 157
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=4.5e-16 Score=130.57 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=72.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..+ ..++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467899999999999999999999999988765 35688999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 98743
No 158
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=6e-16 Score=132.91 Aligned_cols=78 Identities=23% Similarity=0.454 Sum_probs=72.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+ +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred cccccc
Q 007792 319 SQSVSK 324 (589)
Q Consensus 319 a~~~~~ 324 (589)
+++...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987554
No 159
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=126.59 Aligned_cols=77 Identities=21% Similarity=0.496 Sum_probs=71.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++.++|||+|||+.+|+++|..+|++||.|..|.|+. +||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999974 5999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+++..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98743
No 160
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-17 Score=143.82 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=80.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVS--------AEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID 310 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~--------~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~ 310 (589)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|..||..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999998 899999899999999999999999999999999999999
Q ss_pred CeEEEEEeccccc
Q 007792 311 DRRIHVDFSQSVS 323 (589)
Q Consensus 311 gr~i~V~~a~~~~ 323 (589)
|+.|.|.++.+..
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998754
No 161
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=1.2e-16 Score=127.46 Aligned_cols=75 Identities=24% Similarity=0.407 Sum_probs=71.7
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 244 VLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 244 ~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
+|||+|||+.+|+++|.++|++||+|..|.|+.++.+|.++|||||+|.+.++|..|+. +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999997 5899999999999875
No 162
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=8e-16 Score=133.62 Aligned_cols=81 Identities=14% Similarity=0.289 Sum_probs=74.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++.++|||+|||+.+|+++|..+|++||.|..|.|+.+ +.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999875 45689999999999999999999999999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
+.+.
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9863
No 163
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=7.4e-16 Score=133.08 Aligned_cols=80 Identities=14% Similarity=0.212 Sum_probs=72.9
Q ss_pred CceEEEecC----CCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC----HHH----HHHHHH--hcCCc
Q 007792 242 ENVLFVCKL----NPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFEN----RQA----CERAYS--KMDNA 307 (589)
Q Consensus 242 ~~~i~V~nL----~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~----~~~----a~~A~~--~l~g~ 307 (589)
.+.|||+|| |+.|++.+|+.+|++||+|..|.++.|+.||.++|||||+|.+ ..+ |..|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 9999999999999999999999999999999999999999996 333 888988 78999
Q ss_pred eeCCeEEEEEeccc
Q 007792 308 LIDDRRIHVDFSQS 321 (589)
Q Consensus 308 ~i~gr~i~V~~a~~ 321 (589)
.|+|++|+|.+...
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998764
No 164
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=7.3e-16 Score=144.46 Aligned_cols=84 Identities=26% Similarity=0.385 Sum_probs=79.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|..||..|||..|.|+.|.|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
|....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 98643
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.7e-16 Score=141.23 Aligned_cols=83 Identities=25% Similarity=0.483 Sum_probs=79.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
...+..+|||+|||+.+|+++|.++|++||.|..+.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 007792 318 FSQ 320 (589)
Q Consensus 318 ~a~ 320 (589)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.1e-15 Score=147.76 Aligned_cols=85 Identities=29% Similarity=0.470 Sum_probs=78.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..|.++|||+|||+++|+++|.++|++||+|..|.|+.++.|++++|||||+|.+.++|..||..||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87533
No 167
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.7e-16 Score=133.59 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=71.3
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC--CceeCCeEEE
Q 007792 239 KPPENVLFVCKLNPV-TEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMD--NALIDDRRIH 315 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~-~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~--g~~i~gr~i~ 315 (589)
.+|.++|||+|||+. +|+++|.++|++||.|..|.|+. ++|||||+|.+.++|..||+.|+ +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 99999999999999999999974 46999999999999999999886 4669999999
Q ss_pred EEeccccc
Q 007792 316 VDFSQSVS 323 (589)
Q Consensus 316 V~~a~~~~ 323 (589)
|.+|+...
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99998644
No 168
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.2e-16 Score=130.64 Aligned_cols=75 Identities=12% Similarity=0.323 Sum_probs=70.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
..++|||+|||+.+++++|..+|++||.|..|.|+. ++|||||+|.+.++|..|+..|||..|+|+.|.|.|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 468999999999999999999999999999999973 57999999999999999999999999999999999987
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 169
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=130.83 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=72.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
..+|||+|||+.+|+++|+++|++| .|..|.|+.++. |+++|||||+|.+.++|++|| .||+..|+|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999999965 999999999999999999999 6999999999999998865
No 170
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=7.7e-16 Score=129.26 Aligned_cols=77 Identities=27% Similarity=0.466 Sum_probs=70.7
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 239 KPPENVLFVCKLNP-VTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~-~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
.++.++|||+|||+ .+|+++|..+|++||.|..|.|. +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999999 99999999999999999999984 5899999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++++..
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 998644
No 171
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=5.4e-16 Score=140.25 Aligned_cols=85 Identities=27% Similarity=0.424 Sum_probs=73.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEE--E---eecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAE--I---IRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRR 313 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~--i---~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~ 313 (589)
..+.++|||+|||+.+|+++|..+|++||.|..+. + +....+|.++|||||+|.+.++|..||..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45779999999999999999999999999987641 1 111246889999999999999999999999999999999
Q ss_pred EEEEeccccc
Q 007792 314 IHVDFSQSVS 323 (589)
Q Consensus 314 i~V~~a~~~~ 323 (589)
|.|.+|++..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998643
No 172
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-16 Score=134.50 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=76.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGT---VVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIH 315 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~---v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~ 315 (589)
.....+|||+|||+.+|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|..||. ||+..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345689999999999999999999999998 89999999977 9999999999999999999998 999999999999
Q ss_pred EEeccccc
Q 007792 316 VDFSQSVS 323 (589)
Q Consensus 316 V~~a~~~~ 323 (589)
|.++.+..
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99997643
No 173
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.5e-16 Score=130.89 Aligned_cols=76 Identities=26% Similarity=0.466 Sum_probs=72.0
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~ 322 (589)
++|||+|||+.+|+++|.++|++||+|..|.|+.+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999886 6799999999999999999999999999999999999875
Q ss_pred c
Q 007792 323 S 323 (589)
Q Consensus 323 ~ 323 (589)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 174
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=9.1e-16 Score=130.24 Aligned_cols=81 Identities=21% Similarity=0.403 Sum_probs=76.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.++ +|.++|||||+|.+.++|..||. ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356899999999999999999999999999999999997 99999999999999999999997 999999999999999
Q ss_pred cccc
Q 007792 320 QSVS 323 (589)
Q Consensus 320 ~~~~ 323 (589)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7644
No 175
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=2.1e-15 Score=129.88 Aligned_cols=75 Identities=21% Similarity=0.493 Sum_probs=70.3
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 239 KPPENVLFVCKLNPV-TEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~-~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
.++.++|||+|||+. +|+++|+++|++||.|..|.| ++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999998 46899999999999999999999999999999999
Q ss_pred eccc
Q 007792 318 FSQS 321 (589)
Q Consensus 318 ~a~~ 321 (589)
++.+
T Consensus 96 ~a~~ 99 (110)
T 1wf1_A 96 MAGE 99 (110)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9975
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.59 E-value=2.9e-16 Score=140.71 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=74.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.....+|||+|||+++|+++|+++|++|| |+.|.|+.++. |+++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 67999999976 999999999999999999999 7899999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87643
No 177
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=4.8e-15 Score=137.67 Aligned_cols=82 Identities=22% Similarity=0.445 Sum_probs=78.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+..+|||+|||+.+|+++|.++|++||.|..+.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 007792 319 SQ 320 (589)
Q Consensus 319 a~ 320 (589)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 178
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=126.29 Aligned_cols=78 Identities=21% Similarity=0.418 Sum_probs=69.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCC-eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC-ceeCCeEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGT-VVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDN-ALIDDRRIHV 316 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~-v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g-~~i~gr~i~V 316 (589)
..+.++|||+|||+.+|+++|+++|++||. |..+.+. ++|||||+|.+.++|..||..||| ..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345689999999999999999999999999 5555552 469999999999999999999999 9999999999
Q ss_pred Eeccccc
Q 007792 317 DFSQSVS 323 (589)
Q Consensus 317 ~~a~~~~ 323 (589)
.++.+..
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998743
No 179
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-14 Score=122.06 Aligned_cols=78 Identities=18% Similarity=0.357 Sum_probs=71.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
...+.++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999999984 367999999999999999999999999999999999
Q ss_pred eccccc
Q 007792 318 FSQSVS 323 (589)
Q Consensus 318 ~a~~~~ 323 (589)
++.+..
T Consensus 83 ~a~~~~ 88 (97)
T 1x5p_A 83 IARKQP 88 (97)
T ss_dssp CCSSCC
T ss_pred ECCCCC
Confidence 998744
No 180
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=123.69 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=69.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
...+|||+|||+.+|+++|..+|++||.|..| +.++.++. ||||+|.+.++|..||. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 56666665 99999999999999998 99999999999999887
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
+.
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 181
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=122.84 Aligned_cols=73 Identities=29% Similarity=0.417 Sum_probs=65.4
Q ss_pred CCce-EEEecCCCCCCHHH----HHHHhccC-CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q 007792 241 PENV-LFVCKLNPVTEDED----LHTIFSRF-GTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRI 314 (589)
Q Consensus 241 ~~~~-i~V~nL~~~~te~~----L~~~F~~~-G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i 314 (589)
|..| |||+|||+.+++++ |.++|++| |+|..| |+ |||||.|.+.++|..|++.|||..|.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4444 99999999999988 55899999 599887 33 999999999999999999999999999999
Q ss_pred EEEeccccc
Q 007792 315 HVDFSQSVS 323 (589)
Q Consensus 315 ~V~~a~~~~ 323 (589)
+|+||+...
T Consensus 77 ~v~~A~~~s 85 (96)
T 2diu_A 77 IVSFTPKNR 85 (96)
T ss_dssp EEESSCCSC
T ss_pred EEEecCCCc
Confidence 999998744
No 182
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=130.71 Aligned_cols=75 Identities=16% Similarity=0.275 Sum_probs=70.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
..++|||+|||+.+|+++|+++|++||.|..|.|+. ++|||||+|.+.++|..||..|||..|.|+.|.|+||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998864 56899999999999999999999999999999999997
Q ss_pred c
Q 007792 321 S 321 (589)
Q Consensus 321 ~ 321 (589)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 5
No 183
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=125.66 Aligned_cols=79 Identities=15% Similarity=0.286 Sum_probs=72.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSA-EIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~-~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
...++|||+|||+.+|+++|..+|++||.|..| .|+.++.++ .|||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999 588876553 499999999999999999999999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
+.+.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9874
No 184
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=133.47 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=73.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCe----EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTV----VSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v----~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
...+|||+|||+.+|+++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 46899999999999999999999999986 68999998 5899999999999999999999975 999999999999
Q ss_pred Eecccc
Q 007792 317 DFSQSV 322 (589)
Q Consensus 317 ~~a~~~ 322 (589)
..+.+.
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998753
No 185
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.58 E-value=7.1e-15 Score=135.50 Aligned_cols=82 Identities=24% Similarity=0.505 Sum_probs=78.5
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.++|||+|||+.+|+++|.++|++||.|..+.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred cc
Q 007792 322 VS 323 (589)
Q Consensus 322 ~~ 323 (589)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 186
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=3.2e-15 Score=136.27 Aligned_cols=79 Identities=23% Similarity=0.421 Sum_probs=74.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ ++|||||+|.+.++|..||..|||..|.|++|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
+.+.
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9864
No 187
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=2.6e-15 Score=130.50 Aligned_cols=74 Identities=27% Similarity=0.381 Sum_probs=66.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeE-----EE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRR-----IH 315 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~-----i~ 315 (589)
..++|||+|||+.+|+++|+++|++||+|..|.|+.+ |||||+|.+.++|+.||+.|||..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3589999999999999999999999999999999765 89999999999999999999999999998 67
Q ss_pred EEeccc
Q 007792 316 VDFSQS 321 (589)
Q Consensus 316 V~~a~~ 321 (589)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 776655
No 188
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=4.6e-15 Score=122.33 Aligned_cols=75 Identities=11% Similarity=0.187 Sum_probs=70.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
..++|||+|||+.+++++|+++|++| .|..+.|. +++|||||+|.+.++|..|+..|||..|.|++|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 478999999999999999999999999999999999996
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 189
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=2.5e-15 Score=132.10 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=72.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeE--EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVV--SAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~--~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
.+..+|||+|||+.+|+++|+++|++| .|+ .|.|+.++. |+++|||||+|.+.++|.+||+ +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 456899999999999999999999999 577 899999977 9999999999999999999997 57899999999999
Q ss_pred eccc
Q 007792 318 FSQS 321 (589)
Q Consensus 318 ~a~~ 321 (589)
.+.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8864
No 190
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=4.8e-15 Score=122.56 Aligned_cols=77 Identities=18% Similarity=0.357 Sum_probs=63.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc--eeCCeEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA--LIDDRRIH 315 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~--~i~gr~i~ 315 (589)
..++.++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |+|. .+.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3567899999999999999999999999999999999874 78999999999999984 3444 45699999
Q ss_pred EEeccccc
Q 007792 316 VDFSQSVS 323 (589)
Q Consensus 316 V~~a~~~~ 323 (589)
|.+|.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998643
No 191
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.57 E-value=5.7e-15 Score=136.53 Aligned_cols=83 Identities=27% Similarity=0.528 Sum_probs=79.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
+.++|||+|||+.+|+++|.++|++||+|..|.|+.++.+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 192
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3e-15 Score=128.65 Aligned_cols=78 Identities=17% Similarity=0.303 Sum_probs=70.4
Q ss_pred CCCCceEEE--ecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee-----CC
Q 007792 239 KPPENVLFV--CKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI-----DD 311 (589)
Q Consensus 239 ~~~~~~i~V--~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i-----~g 311 (589)
..|..+||| |||++.+|+++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.|||..| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 346789999 77999999999999999999999988764 368999999999999999999999998 78
Q ss_pred eEEEEEecccc
Q 007792 312 RRIHVDFSQSV 322 (589)
Q Consensus 312 r~i~V~~a~~~ 322 (589)
++|.|.|+...
T Consensus 96 ~~l~v~~a~~~ 106 (114)
T 2cq2_A 96 ITLYLNFVEKV 106 (114)
T ss_dssp EECEEEEESCC
T ss_pred cEEEEEecccC
Confidence 99999999753
No 193
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=1e-14 Score=138.49 Aligned_cols=84 Identities=19% Similarity=0.378 Sum_probs=75.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
.+..+|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999999988999999999999999999999975 899999999999999
Q ss_pred ccccc
Q 007792 320 QSVSK 324 (589)
Q Consensus 320 ~~~~~ 324 (589)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 87544
No 194
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.56 E-value=1.2e-14 Score=127.78 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=69.0
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEec
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNY-AFIEFENRQACERAYSKMDNALIDD--RRIHVDFS 319 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~-aFV~f~~~~~a~~A~~~l~g~~i~g--r~i~V~~a 319 (589)
-.|||+||++.+|+++|.++|++||.|..|.|+.. .+|| |||+|.+.++|..|++.|||..|.| +.|+|+||
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46789999999999999999999999999988764 3578 9999999999999999999999988 99999999
Q ss_pred ccc
Q 007792 320 QSV 322 (589)
Q Consensus 320 ~~~ 322 (589)
++.
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 874
No 195
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.55 E-value=2e-14 Score=132.78 Aligned_cols=81 Identities=27% Similarity=0.546 Sum_probs=77.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD--RRIHV 316 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g--r~i~V 316 (589)
..+..+|||+|||+.+++++|.++|++||.|..+.|+.+..+|.++|||||+|.+.++|..|+..|||..|.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999999999988 99999
Q ss_pred Eec
Q 007792 317 DFS 319 (589)
Q Consensus 317 ~~a 319 (589)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 196
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=3.2e-14 Score=124.56 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=68.4
Q ss_pred CCCce--EEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHhcCCceeCC--eEE
Q 007792 240 PPENV--LFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNY-AFIEFENRQACERAYSKMDNALIDD--RRI 314 (589)
Q Consensus 240 ~~~~~--i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~-aFV~f~~~~~a~~A~~~l~g~~i~g--r~i 314 (589)
+|..+ |||+||++.+|+++|.++|++||.|..|.|+.. .|| |||+|.+.++|..|++.|||..|.| +.|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 44554 679999999999999999999999999998652 286 9999999999999999999999987 699
Q ss_pred EEEecccc
Q 007792 315 HVDFSQSV 322 (589)
Q Consensus 315 ~V~~a~~~ 322 (589)
.|++|++.
T Consensus 95 ~V~~Ak~~ 102 (124)
T 2e5i_A 95 KIEYARPT 102 (124)
T ss_dssp EEECCSCS
T ss_pred EEEEecCC
Confidence 99999874
No 197
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=2.2e-14 Score=136.42 Aligned_cols=85 Identities=20% Similarity=0.398 Sum_probs=80.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98743
No 198
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.54 E-value=1.7e-14 Score=139.19 Aligned_cols=83 Identities=28% Similarity=0.461 Sum_probs=79.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
+.+
T Consensus 204 ~~~ 206 (216)
T 2qfj_A 204 TPP 206 (216)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 199
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.54 E-value=2.4e-15 Score=145.49 Aligned_cols=81 Identities=31% Similarity=0.548 Sum_probs=75.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
...+|||+|||+.+|+++|.++|++||.|..|.|+.+. +.++|||||+|.+.++|..||+.|||..|+|+.|.|.+|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999874 4479999999999999999999999999999999999998
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 743
No 200
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=2.6e-14 Score=121.75 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=74.0
Q ss_pred CCCCceEEEecCCC-----CCCHHHHHHHhccCCCeEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHhcCCceeCCe
Q 007792 239 KPPENVLFVCKLNP-----VTEDEDLHTIFSRFGTVVSAEIIRDFKT-GDSLNYAFIEFENRQACERAYSKMDNALIDDR 312 (589)
Q Consensus 239 ~~~~~~i~V~nL~~-----~~te~~L~~~F~~~G~v~~~~i~~d~~t-g~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr 312 (589)
..|..+|+|.||.. +.++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999963 2378999999999999999999998654 68899999999999999999999999999999
Q ss_pred EEEEEeccc
Q 007792 313 RIHVDFSQS 321 (589)
Q Consensus 313 ~i~V~~a~~ 321 (589)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999975
No 201
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.54 E-value=2.2e-14 Score=136.10 Aligned_cols=83 Identities=23% Similarity=0.349 Sum_probs=77.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 44678999999999999999999999999999999999999999999999999999999999965 99999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
+.+.
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8764
No 202
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=126.29 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=70.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 240 PPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKT---GDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~t---g~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
...++|||+|||+.+|+++|+++|++||+|. +.++.+..+ |+++|||||+|.+.++|+.||+.|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568999999999999999999999999999 888888777 7999999999999999999999985 488888888
Q ss_pred Eeccc
Q 007792 317 DFSQS 321 (589)
Q Consensus 317 ~~a~~ 321 (589)
..+.+
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 76654
No 203
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=1.7e-14 Score=131.60 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=69.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEecc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD--RRIHVDFSQ 320 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g--r~i~V~~a~ 320 (589)
.+|||+||++.+|+++|.++|++||.|..|.|+.. .++|||||+|.+.++|..|++.|||..|.| +.|+|+||+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 46899999999999999999999999999998653 256899999999999999999999999965 999999998
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
+.
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 204
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.53 E-value=7.8e-15 Score=135.55 Aligned_cols=80 Identities=23% Similarity=0.490 Sum_probs=76.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
..+|||+|||+.+|+++|.++|++||.|..+.|+.++.+|.++|||||+|.+.++|.+|++ |+|..|.|+.|.|.+|.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5699999999999999999999999999999999998899999999999999999999997 899999999999999986
Q ss_pred c
Q 007792 322 V 322 (589)
Q Consensus 322 ~ 322 (589)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 205
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.53 E-value=9.7e-15 Score=135.79 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=74.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC---CeEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID---DRRIH 315 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~---gr~i~ 315 (589)
..+..+|||+|||+.+|+++|.++|++||.|..+.|+.+. +|.++|||||+|.+.++|..|+..|||..+. |++|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999985 5899999999999999999999999998776 49999
Q ss_pred EEecc
Q 007792 316 VDFSQ 320 (589)
Q Consensus 316 V~~a~ 320 (589)
|.||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99973
No 206
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.53 E-value=3e-14 Score=131.31 Aligned_cols=81 Identities=26% Similarity=0.456 Sum_probs=75.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeE--EEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRR--IHV 316 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~--i~V 316 (589)
..+..+|||+|||+.+++++|.++|++||.|..+.|+.+..+|.++|||||+|.+.++|..|+..|||..|.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345689999999999999999999999999999999999889999999999999999999999999999999965 888
Q ss_pred Eec
Q 007792 317 DFS 319 (589)
Q Consensus 317 ~~a 319 (589)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 207
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=2.2e-14 Score=125.67 Aligned_cols=77 Identities=18% Similarity=0.365 Sum_probs=70.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|| ++|+++|.++|++||.|..|.|+ .++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999996 69999999999999999999986 3679999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98743
No 208
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=3.3e-14 Score=136.53 Aligned_cols=78 Identities=19% Similarity=0.370 Sum_probs=72.7
Q ss_pred CCCceEEEecCC-CCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 240 PPENVLFVCKLN-PVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 240 ~~~~~i~V~nL~-~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
++.++|||+||| +.+|+++|..+|++||.|..|+|+.+ .+|||||+|.+.++|..||+.|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 89999999999999999999999875 469999999999999999999999999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
++..
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 9753
No 209
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=6.5e-14 Score=130.52 Aligned_cols=112 Identities=18% Similarity=0.236 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHhhhhhhhhhhhhccCCCC-CCCCCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcc
Q 007792 206 LSAAELEQVIRSKDARSSAVVLESIGDIP-DADIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSL 284 (589)
Q Consensus 206 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~ 284 (589)
.+++.+++++.-......+..+...-..+ ......+..+|||+|||+.+|+++|.++|++||.|..+ ..++.++
T Consensus 62 ~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~ 136 (175)
T 1fje_B 62 ESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSK 136 (175)
T ss_dssp SSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCC
T ss_pred CCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCc
Confidence 35666666663211222233332222111 12234467899999999999999999999999988765 4678899
Q ss_pred cEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecccc
Q 007792 285 NYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 285 g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~ 322 (589)
|||||+|.+.++|..|+..|||..|.|+.|.|.||.++
T Consensus 137 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 137 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999999999999999864
No 210
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=3.8e-14 Score=116.28 Aligned_cols=71 Identities=21% Similarity=0.410 Sum_probs=66.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRF----G-------TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI 309 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~----G-------~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i 309 (589)
+..+|||+|||+.+|+++|+++|++| | .|..+.++.+ +|||||+|.+.++|..|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 9999998754 699999999999999999 9999999
Q ss_pred CCeEEEEEe
Q 007792 310 DDRRIHVDF 318 (589)
Q Consensus 310 ~gr~i~V~~ 318 (589)
.|+.|.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 211
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.4e-14 Score=117.90 Aligned_cols=76 Identities=18% Similarity=0.383 Sum_probs=66.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 5689999999999999999999999999999999865 67999999999999976542 2456699999999998
Q ss_pred ccc
Q 007792 321 SVS 323 (589)
Q Consensus 321 ~~~ 323 (589)
+..
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 744
No 212
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=7e-14 Score=128.66 Aligned_cols=79 Identities=20% Similarity=0.436 Sum_probs=73.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecccc
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~ 322 (589)
.+|||+|||+.+|+++|.++|++||+|..|.|+.++ +++++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999985 4779999999999999999999999999999999999999764
No 213
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=6.4e-14 Score=135.06 Aligned_cols=81 Identities=21% Similarity=0.387 Sum_probs=74.5
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999998765
Q ss_pred c
Q 007792 322 V 322 (589)
Q Consensus 322 ~ 322 (589)
.
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 4
No 214
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=5.3e-14 Score=142.53 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=76.6
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhccCCCeEEEEEeecCC-CCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 239 KPPENVLFVCKLNPV-TEDEDLHTIFSRFGTVVSAEIIRDFK-TGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~-~te~~L~~~F~~~G~v~~~~i~~d~~-tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
..+..+|||+|||+. +|+++|.++|++||.|..|.|+.+.. ||.++|||||+|.+.++|..|+ .|||..|.|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999999876 6999999999999999999999 99999999999999
Q ss_pred Eecccc
Q 007792 317 DFSQSV 322 (589)
Q Consensus 317 ~~a~~~ 322 (589)
.||.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999874
No 215
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=1.6e-13 Score=130.28 Aligned_cols=78 Identities=9% Similarity=0.201 Sum_probs=72.0
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.++|||+|||+.+|+++|.++|++||+|..|.|+.+. +|.++|||||+|.+.++|..||..++ ..|+|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999985 58899999999999999999997654 599999999999865
No 216
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.46 E-value=7.5e-14 Score=140.82 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=78.8
Q ss_pred CCCCceEEEecCCCCC-CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 239 KPPENVLFVCKLNPVT-EDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~-te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
..+.++|||+|||+.+ |+++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 4567899999999995 999999999999999999999985 79999999999999999999999999999999999999
Q ss_pred ecccccc
Q 007792 318 FSQSVSK 324 (589)
Q Consensus 318 ~a~~~~~ 324 (589)
|+.+...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987543
No 217
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.46 E-value=9.7e-14 Score=128.12 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=74.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..|+.. +..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999974 678999999999987
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 218
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=1.5e-13 Score=127.68 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=75.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHhcCCceeC---CeEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTG--DSLNYAFIEFENRQACERAYSKMDNALID---DRRIH 315 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg--~~~g~aFV~f~~~~~a~~A~~~l~g~~i~---gr~i~ 315 (589)
..++|||+|||+.+|+++|.++|++||+|..|.|+.++.++ .++|||||+|.+.++|..|++.|||..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35799999999999999999999999999999999998887 89999999999999999999999998776 68888
Q ss_pred EEecccc
Q 007792 316 VDFSQSV 322 (589)
Q Consensus 316 V~~a~~~ 322 (589)
|.++.+.
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8887653
No 219
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=1.1e-13 Score=134.66 Aligned_cols=79 Identities=19% Similarity=0.370 Sum_probs=71.1
Q ss_pred CCCCceEEEecCCCCC---------CHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 007792 239 KPPENVLFVCKLNPVT---------EDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI 309 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~---------te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i 309 (589)
....++||||||+..+ ++++|..+|++||+|..|.|+. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3457899999999998 7999999999999999999986 479999999999999999999999999
Q ss_pred ------------CCeEEEEEeccccc
Q 007792 310 ------------DDRRIHVDFSQSVS 323 (589)
Q Consensus 310 ------------~gr~i~V~~a~~~~ 323 (589)
.|+.|.|.||+..+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998644
No 220
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.43 E-value=2.2e-13 Score=137.44 Aligned_cols=85 Identities=21% Similarity=0.429 Sum_probs=80.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
.++..+|||+|||+.+|+++|.++|++||.|..+.|+.+..+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 007792 319 SQSVS 323 (589)
Q Consensus 319 a~~~~ 323 (589)
+.+..
T Consensus 172 a~~~~ 176 (284)
T 3smz_A 172 TDAGQ 176 (284)
T ss_dssp CCGGG
T ss_pred CCCCC
Confidence 98643
No 221
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.43 E-value=4e-13 Score=135.36 Aligned_cols=82 Identities=21% Similarity=0.438 Sum_probs=75.5
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLH----TIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRI 314 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~----~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i 314 (589)
..+.++|||+|||+.+|+++|+ ++|++||.|..|.|+. +++++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999966 8999999999999875 68899999999999999999999999999999999
Q ss_pred EEEeccccc
Q 007792 315 HVDFSQSVS 323 (589)
Q Consensus 315 ~V~~a~~~~ 323 (589)
.|.++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997644
No 222
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=8.9e-13 Score=113.77 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCCCceEEEecCCCCCC-----------HHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 007792 238 IKPPENVLFVCKLNPVTE-----------DEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDN 306 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~t-----------e~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g 306 (589)
.+.+..+|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|..|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345688999999954432 5899999999999999965 543 3789999999999999999999999
Q ss_pred ceeCCeEEEEEeccccc
Q 007792 307 ALIDDRRIHVDFSQSVS 323 (589)
Q Consensus 307 ~~i~gr~i~V~~a~~~~ 323 (589)
..|+|++|.|.++.+..
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999997743
No 223
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=3e-13 Score=132.13 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=74.4
Q ss_pred CCCCCceEEEecCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 238 IKPPENVLFVCKLNP-VTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~-~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
..++.++|||+|||+ .+++++|.++|++||.|..|.|+.++ +|||||+|.+.++|..||+.|||..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 355778999999999 99999999999999999999998874 689999999999999999999999999999999
Q ss_pred Eecccc
Q 007792 317 DFSQSV 322 (589)
Q Consensus 317 ~~a~~~ 322 (589)
.++.+.
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 999764
No 224
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=7.5e-13 Score=112.73 Aligned_cols=82 Identities=22% Similarity=0.337 Sum_probs=71.8
Q ss_pred CCCceEEEecC--CCCCC--------HHHHHHHhccCCCeEEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHhcCCc
Q 007792 240 PPENVLFVCKL--NPVTE--------DEDLHTIFSRFGTVVSAEIIRDFKT--GDSLNYAFIEFENRQACERAYSKMDNA 307 (589)
Q Consensus 240 ~~~~~i~V~nL--~~~~t--------e~~L~~~F~~~G~v~~~~i~~d~~t--g~~~g~aFV~f~~~~~a~~A~~~l~g~ 307 (589)
.|..+|.|.|+ |..+. +++|+++|++||+|..|.|+.+..+ +.++|||||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 33343 3689999999999999999988755 467999999999999999999999999
Q ss_pred eeCCeEEEEEeccc
Q 007792 308 LIDDRRIHVDFSQS 321 (589)
Q Consensus 308 ~i~gr~i~V~~a~~ 321 (589)
.|+|++|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999865
No 225
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.38 E-value=1.3e-12 Score=131.62 Aligned_cols=78 Identities=22% Similarity=0.441 Sum_probs=72.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEE
Q 007792 238 IKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID-DRRIHV 316 (589)
Q Consensus 238 ~~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~-gr~i~V 316 (589)
..++.++|||+|||+.+|+++|.++|++||.|..|.|+.++ +|||||+|.+.++|..||..|||..|. |+.|.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 35567899999999999999999999999999999998653 589999999999999999999999999 999999
Q ss_pred Eecc
Q 007792 317 DFSQ 320 (589)
Q Consensus 317 ~~a~ 320 (589)
.||+
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 226
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.38 E-value=4.7e-13 Score=128.40 Aligned_cols=79 Identities=11% Similarity=0.263 Sum_probs=70.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCe--EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCe----
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTV--VSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDR---- 312 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v--~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr---- 312 (589)
.+|..+|||+|||+.+|+++|+++|++||.| ..+.|+.+. +..+|||||+|.+.++|..||..|||..|.|.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 4567899999999999999999999999999 899988764 55679999999999999999999999999986
Q ss_pred EEEEEec
Q 007792 313 RIHVDFS 319 (589)
Q Consensus 313 ~i~V~~a 319 (589)
++.|++|
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 6777775
No 227
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.37 E-value=9.5e-13 Score=128.57 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=72.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFG-TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID-DRRIHV 316 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G-~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~-gr~i~V 316 (589)
.++.++|||+|||+.+++++|.++|++|| .|..|.|+.. .+|||||+|.+.++|..|+..|||..|. |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 45678999999999999999999999999 9999999653 4689999999999999999999999999 999999
Q ss_pred Eecccc
Q 007792 317 DFSQSV 322 (589)
Q Consensus 317 ~~a~~~ 322 (589)
.|+++.
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999863
No 228
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.37 E-value=5.2e-13 Score=127.11 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=73.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEE
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFG-TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID-DRRIHV 316 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G-~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~-gr~i~V 316 (589)
.++.++|||+|||+.+++++|.++|++|| .|..|.|+.+ .+|||||+|.+.++|..|+..|||..|. |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 45688999999999999999999999999 9999999764 3689999999999999999999999999 999999
Q ss_pred Eecccc
Q 007792 317 DFSQSV 322 (589)
Q Consensus 317 ~~a~~~ 322 (589)
.|+++.
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999863
No 229
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=2.1e-13 Score=127.06 Aligned_cols=82 Identities=18% Similarity=0.320 Sum_probs=72.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|..|| .|||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 456789999999999999999999999998766 33445567889999999999999999999 5999999999999999
Q ss_pred cccc
Q 007792 319 SQSV 322 (589)
Q Consensus 319 a~~~ 322 (589)
+.+.
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 9764
No 230
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=2.7e-13 Score=115.37 Aligned_cols=73 Identities=15% Similarity=0.389 Sum_probs=65.2
Q ss_pred EEecCCCCCCHHHHHHHh------------ccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q 007792 246 FVCKLNPVTEDEDLHTIF------------SRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRR 313 (589)
Q Consensus 246 ~V~nL~~~~te~~L~~~F------------~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~ 313 (589)
.+.||++.+++++|.++| ++||+|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|+|++
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 367888888888877666 999999999999875 4789999999999999999999999999999999
Q ss_pred EEEEec
Q 007792 314 IHVDFS 319 (589)
Q Consensus 314 i~V~~a 319 (589)
|.|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 231
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=1.1e-12 Score=113.91 Aligned_cols=81 Identities=12% Similarity=0.252 Sum_probs=71.6
Q ss_pred CCceEEEecCCC--CC---CHHHHHHHhccCCCeEEEEEeecCC----CCCcccEEEEEEcCHHHHHHHHHhcCCceeCC
Q 007792 241 PENVLFVCKLNP--VT---EDEDLHTIFSRFGTVVSAEIIRDFK----TGDSLNYAFIEFENRQACERAYSKMDNALIDD 311 (589)
Q Consensus 241 ~~~~i~V~nL~~--~~---te~~L~~~F~~~G~v~~~~i~~d~~----tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g 311 (589)
|..+|+|.||-. ++ .+++|++.|++||+|..|.|+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999932 22 3689999999999999999998864 46788999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 007792 312 RRIHVDFSQS 321 (589)
Q Consensus 312 r~i~V~~a~~ 321 (589)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 232
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.34 E-value=1.9e-12 Score=128.99 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=72.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEe
Q 007792 239 KPPENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDF 318 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~ 318 (589)
..+.++|||+|||+.+|+++|..+|++||.|..|.|.. ++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34567999999999999999999999999999999965 469999999999999999999999999999999999
Q ss_pred cccccc
Q 007792 319 SQSVSK 324 (589)
Q Consensus 319 a~~~~~ 324 (589)
+.+...
T Consensus 93 a~~~~~ 98 (261)
T 3sde_A 93 ATHGAA 98 (261)
T ss_dssp CCCSSE
T ss_pred cccCCc
Confidence 986443
No 233
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.33 E-value=9.2e-13 Score=125.37 Aligned_cols=76 Identities=21% Similarity=0.410 Sum_probs=71.6
Q ss_pred CceEEEecCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 007792 242 ENVLFVCKLNP-VTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQ 320 (589)
Q Consensus 242 ~~~i~V~nL~~-~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~ 320 (589)
.++|||+|||+ .+++++|.++|++||.|..|.|+.++ +|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998864 6899999999999999999999999999999999998
Q ss_pred cc
Q 007792 321 SV 322 (589)
Q Consensus 321 ~~ 322 (589)
+.
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 234
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.31 E-value=4.1e-12 Score=126.57 Aligned_cols=81 Identities=27% Similarity=0.433 Sum_probs=74.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC-CceeC---CeEEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMD-NALID---DRRIHV 316 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~-g~~i~---gr~i~V 316 (589)
+..+|||+|||+.+|+++|..+|+.||.|..|.|+.+ .+|.++|||||+|.+.++|..||..|| |..+. |++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 5689999999999999999999999999999999999 689999999999999999999999995 55555 999999
Q ss_pred Eecccc
Q 007792 317 DFSQSV 322 (589)
Q Consensus 317 ~~a~~~ 322 (589)
.++.+.
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 999763
No 235
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=4e-12 Score=128.67 Aligned_cols=82 Identities=12% Similarity=0.261 Sum_probs=71.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEec
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFG-TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFS 319 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G-~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a 319 (589)
+..+|||+|||+.+|+++|.++|.+|| .|..|.|+.+.. |.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999998865 788999999999999999999999999999999999999
Q ss_pred cccc
Q 007792 320 QSVS 323 (589)
Q Consensus 320 ~~~~ 323 (589)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 8644
No 236
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.27 E-value=8.2e-12 Score=115.64 Aligned_cols=75 Identities=19% Similarity=0.374 Sum_probs=67.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRF----G-------TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI 309 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~----G-------~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i 309 (589)
+.++|||+|||+.+|+++|.++|++| | .|..+.+.. ++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 777777754 5799999999999999999 8999999
Q ss_pred CCeEEEEEecccc
Q 007792 310 DDRRIHVDFSQSV 322 (589)
Q Consensus 310 ~gr~i~V~~a~~~ 322 (589)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999997653
No 237
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.26 E-value=1.1e-11 Score=117.69 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=66.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRF----G-------TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI 309 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~----G-------~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i 309 (589)
..++|||+|||+.+|+++|.++|++| | .|..+.+. .++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 36899999999999999999999999 5 66666653 46799999999999999999 8999999
Q ss_pred CCeEEEEEecccc
Q 007792 310 DDRRIHVDFSQSV 322 (589)
Q Consensus 310 ~gr~i~V~~a~~~ 322 (589)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998764
No 238
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.6e-11 Score=100.45 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccccc
Q 007792 252 PVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQSVS 323 (589)
Q Consensus 252 ~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~~~ 323 (589)
..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|..||..+++ +.|++|.|.|+.+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 468999999999999999999997 35789999999999999999988665 679999999998654
No 239
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=2e-11 Score=125.14 Aligned_cols=77 Identities=16% Similarity=0.310 Sum_probs=66.7
Q ss_pred CCCCceEEEec--CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeC---Ce-
Q 007792 239 KPPENVLFVCK--LNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALID---DR- 312 (589)
Q Consensus 239 ~~~~~~i~V~n--L~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~---gr- 312 (589)
.+|..+||||| |++.+|+++|+++|++||+|..|.|+. ++|||||+|.+.++|++||+.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56789999999 588999999999999999999887743 4699999999999999999999999883 45
Q ss_pred -EEEEEeccc
Q 007792 313 -RIHVDFSQS 321 (589)
Q Consensus 313 -~i~V~~a~~ 321 (589)
.|.|.|+..
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 577777753
No 240
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=7.8e-11 Score=101.51 Aligned_cols=78 Identities=8% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCCceEEEecCCCCCC----------HHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 007792 240 PPENVLFVCKLNPVTE----------DEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI 309 (589)
Q Consensus 240 ~~~~~i~V~nL~~~~t----------e~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i 309 (589)
.|..+|.|.|+-.... +++|++.|++||.|..|.|+.+. ++|||||+|.+.++|.+|++.|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3567899999833221 35789999999999999987652 589999999999999999999999999
Q ss_pred CCeEEEEEeccc
Q 007792 310 DDRRIHVDFSQS 321 (589)
Q Consensus 310 ~gr~i~V~~a~~ 321 (589)
+|+.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999864
No 241
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-10 Score=94.17 Aligned_cols=75 Identities=16% Similarity=0.284 Sum_probs=65.7
Q ss_pred CCCCCceEEEecCC----CCCCH----HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 007792 238 IKPPENVLFVCKLN----PVTED----EDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALI 309 (589)
Q Consensus 238 ~~~~~~~i~V~nL~----~~~te----~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i 309 (589)
..||..||+|.-++ .++-. .+|.+.|.+||.|..++|+.+ .+||+|.+.++|.+||. |||..|
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEe
Confidence 46788999998877 23433 678899999999999999886 38999999999999997 999999
Q ss_pred CCeEEEEEeccc
Q 007792 310 DDRRIHVDFSQS 321 (589)
Q Consensus 310 ~gr~i~V~~a~~ 321 (589)
+|+.|+|+++.+
T Consensus 74 ~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 74 LNRTITIALKSP 85 (91)
T ss_dssp TTEEEEEEECCC
T ss_pred CCeEEEEEeCCC
Confidence 999999999876
No 242
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=3.3e-10 Score=97.81 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=69.1
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHHhcC--CceeCCeEE
Q 007792 239 KPPENVLFVCKLNPV-TEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFEN-RQACERAYSKMD--NALIDDRRI 314 (589)
Q Consensus 239 ~~~~~~i~V~nL~~~-~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~-~~~a~~A~~~l~--g~~i~gr~i 314 (589)
-+++..|||+||++. ++.++|+++|++||+|.+|.|+.+.. .|||.|.+ ..+|..|+..|| +..|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 456899999999999 99999999999999999999988754 59999999 899999999995 789999999
Q ss_pred EEEeccc
Q 007792 315 HVDFSQS 321 (589)
Q Consensus 315 ~V~~a~~ 321 (589)
.|++...
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9987653
No 243
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.1e-09 Score=89.03 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=65.7
Q ss_pred CCCCCCCceEEEecCCCC-----CCH----HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 007792 236 ADIKPPENVLFVCKLNPV-----TED----EDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDN 306 (589)
Q Consensus 236 ~~~~~~~~~i~V~nL~~~-----~te----~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g 306 (589)
....||..||+|.-++.. +-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||. |||
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGG
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCC
Confidence 345788999999988743 322 5688999999999999999873 9999999999999997 999
Q ss_pred ceeCCeEEEEEeccc
Q 007792 307 ALIDDRRIHVDFSQS 321 (589)
Q Consensus 307 ~~i~gr~i~V~~a~~ 321 (589)
..|+|+.|+|.+..+
T Consensus 80 ~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 80 MKVKGRAVKISGPSS 94 (95)
T ss_dssp SEETTEEEEEECCCC
T ss_pred eeeCCeEEEEeccCC
Confidence 999999999998643
No 244
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.66 E-value=3.5e-08 Score=95.44 Aligned_cols=67 Identities=13% Similarity=0.286 Sum_probs=60.7
Q ss_pred CHHHHHHHhccCCCeEEEEEeecC----CCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEeccc
Q 007792 255 EDEDLHTIFSRFGTVVSAEIIRDF----KTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVDFSQS 321 (589)
Q Consensus 255 te~~L~~~F~~~G~v~~~~i~~d~----~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~~a~~ 321 (589)
.+++|.+.|++||.|..+.|+.+. .++.++||+||+|.+.++|.+|+..|||..|+|+.|.|.++..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 467899999999999999998554 4558999999999999999999999999999999999999864
No 245
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.44 E-value=1.7e-07 Score=99.74 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=7.7
Q ss_pred HHHHhccCCCeEEE
Q 007792 259 LHTIFSRFGTVVSA 272 (589)
Q Consensus 259 L~~~F~~~G~v~~~ 272 (589)
|..+|.++|+|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 44555555555554
No 246
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=1.2e-05 Score=66.64 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=66.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccC-----CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRF-----GTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIH 315 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~-----G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~ 315 (589)
...+|-|-|||..++...|..++..+ |.|+.+.++.+. +-|+|+|.+...|-+|.-+|+|.+|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35788889999999999999999999 999999998874 5799999999999999999999999999999
Q ss_pred EEec
Q 007792 316 VDFS 319 (589)
Q Consensus 316 V~~a 319 (589)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8743
No 247
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00011 Score=60.66 Aligned_cols=75 Identities=13% Similarity=0.300 Sum_probs=63.7
Q ss_pred CceEEEecCCCCC-CH----HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 007792 242 ENVLFVCKLNPVT-ED----EDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHV 316 (589)
Q Consensus 242 ~~~i~V~nL~~~~-te----~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V 316 (589)
.++|+|.||+..+ .. +.++.+|..|+++........ -.-..|.|.+.++|.+|-..|++..|+|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998865 32 567899999999988777653 346789999999999999999999999999999
Q ss_pred Eecccc
Q 007792 317 DFSQSV 322 (589)
Q Consensus 317 ~~a~~~ 322 (589)
-++++.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999853
No 248
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.96 E-value=0.0056 Score=49.62 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=57.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHhcCCceeC
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGD--SLNYAFIEFENRQACERAYSKMDNALID 310 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~--~~g~aFV~f~~~~~a~~A~~~l~g~~i~ 310 (589)
++|.|.+||+.+|++++.+.++.+..+....++..+.+.+ ..+-|||.|.+.+++....+.++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5789999999999999999999998887777776554433 3467999999999999999999998774
No 249
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.91 E-value=0.0027 Score=51.53 Aligned_cols=54 Identities=26% Similarity=0.404 Sum_probs=45.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMD 305 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~ 305 (589)
..++| ++|.++...+|.++|+.||. ..|.++-| .-|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45555 99999999999999999994 45777776 489999999999999998663
No 250
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.71 E-value=0.0027 Score=51.71 Aligned_cols=54 Identities=26% Similarity=0.385 Sum_probs=46.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMD 305 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~ 305 (589)
..++| ++|.++...+|.++|+.|| -..|.++-| .-|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 456777776 489999999999999998664
No 251
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.017 Score=47.37 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=58.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcc-----CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSR-----FGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIH 315 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~-----~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~ 315 (589)
-..+|.|.|||+.+.++.|.-+|+. -|+|..+.... +-|+|+|.+...|+..|+. ....|.|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3579999999999999999999986 26888887643 5799999999999999853 35678888899
Q ss_pred EEeccc
Q 007792 316 VDFSQS 321 (589)
Q Consensus 316 V~~a~~ 321 (589)
|....+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 876544
No 252
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.17 E-value=0.018 Score=48.81 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=57.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCC-eEEEEEec
Q 007792 241 PENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDD-RRIHVDFS 319 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~g-r~i~V~~a 319 (589)
..+-|.|-+.|+.. -..|...|++||.|....... ...+-.|.|.+..+|++|| ..||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 35788899999886 467888999999999877621 2369999999999999999 569999985 66777765
Q ss_pred c
Q 007792 320 Q 320 (589)
Q Consensus 320 ~ 320 (589)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 253
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.72 E-value=0.025 Score=46.10 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=56.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHhcCCceeCC-----eEE
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGD--SLNYAFIEFENRQACERAYSKMDNALIDD-----RRI 314 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~--~~g~aFV~f~~~~~a~~A~~~l~g~~i~g-----r~i 314 (589)
.-+|.|..||+.+|++++.+.++.+-++.....+..+.+.+ ...-|||.|.+.+++....+.++|..+-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 35789999999999999888887765554433333332222 23579999999999999999999987743 334
Q ss_pred EEEec
Q 007792 315 HVDFS 319 (589)
Q Consensus 315 ~V~~a 319 (589)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 254
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=95.68 E-value=0.017 Score=51.56 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=63.0
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHh----cCccCCceEEEeecCcccccCCCCCCCCCCCCccccccccccc
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCK----IKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQAR 76 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~----~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~ 76 (589)
|.|.|.-.-..|+++|+.+.||+||..|+++.= ...|.+ -++-..|-.
T Consensus 30 ~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~LPl~~~~~~~g~-E~y~~lp~~--------------------------- 81 (153)
T 2nnz_A 30 MRLRIRFESAECEVELYEEWAPETVRAIADALPIKSTANRWGD-EIYFTTQVA--------------------------- 81 (153)
T ss_dssp CCEEEEETTEEEEECCCTTSCHHHHHHHHHTCSEEEEEEEETT-EEEECCSCC---------------------------
T ss_pred eEEEEEECCEEEEEEEcCCCCHHHHHHHHHhCCcEEEHHhhCC-cEEEECCCC---------------------------
Confidence 667888888899999999999999999999872 112322 222111211
Q ss_pred ccCC-ccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCC------CcceEEEEecCHHHHHHHh
Q 007792 77 FFGD-EIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDE------KHTIFGEVAEGLETLSRIN 140 (589)
Q Consensus 77 ~~~~-e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~------~~~vFG~Vv~G~~vl~~i~ 140 (589)
++. | +.. ....+|-|++...+. .|.|-..+ .|...+ .-.+||+|++|++.|..+.
T Consensus 82 -l~~~e-n~~-~~~~~GDI~Yy~pg~-----~LaIFYg~-~p~s~~e~~~as~~~~lG~I~~gle~L~~~~ 143 (153)
T 2nnz_A 82 -VEKEE-NSK-DVVELGDVAYWIPGK-----AICLFFGK-TPISDDKIRPASAVNVIGRIVNSMEGLKGVA 143 (153)
T ss_dssp -CCCSS-CCB-CCCCTTEEEEETTTT-----EEEEESSC-CTTCTTSCCCCSSEEEEEECCSCCCCGGGCC
T ss_pred -CCCCC-CCc-ccCCCCeEEEeCCCC-----EEEEEECC-ccccccccccccccEEEEEEccCHHHHhhCC
Confidence 111 1 011 112568888776543 26666665 332221 2578999999988776663
No 255
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=95.33 E-value=0.12 Score=46.42 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=28.6
Q ss_pred ccee-EEEEecCCCChhHHHHHHHHHh--cC----ccCCceEEEeecCc
Q 007792 8 SLGD-IVVDLFVDKCPLTTKNFLKLCK--IK----YYNGCLFHTVQKDF 49 (589)
Q Consensus 8 ~~G~-i~ieL~~~~aP~~~~nF~~l~~--~~----~Y~g~~f~rv~~~~ 49 (589)
..|- ++.+|..+.||+||+.|+++.= +. -|-|-.++-.+|.|
T Consensus 30 ~~g~~~~A~Lldd~APkTcaA~~~~LP~~~~viHarwSGeeVy~~lp~f 78 (188)
T 3kop_A 30 KRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAF 78 (188)
T ss_dssp TTTEEEEEEECTTTSHHHHHHHHHHCCEEEECEECSSSSSEEEEEEECC
T ss_pred cCCeEEEEEEccccChHHHHHHHHhCCCCcceEEEEEecceEEEECCcc
Confidence 3344 7899999999999999999772 11 15555555444443
No 256
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.03 E-value=0.019 Score=49.35 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=56.0
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEE-EEEee------------cCCCC-CcccEEEEEEcCHHHHHHHHHhcCCc
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVS-AEIIR------------DFKTG-DSLNYAFIEFENRQACERAYSKMDNA 307 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~-~~i~~------------d~~tg-~~~g~aFV~f~~~~~a~~A~~~l~g~ 307 (589)
...|.|-+.|+..+ ..+...|++||.|.. +.+.. .+... ....+..|+|.+..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 46777888877765 567789999999875 21110 00000 02467899999999999999 57999
Q ss_pred eeCCeEEEEEeccc
Q 007792 308 LIDDRRIHVDFSQS 321 (589)
Q Consensus 308 ~i~gr~i~V~~a~~ 321 (589)
.|+|..|=|....+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888887754
No 257
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=93.89 E-value=0.2 Score=43.59 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=63.4
Q ss_pred CEEEEEecceeEEEEecCCCChhHHHHHHHHHh----cCccCCceEEEeecCcccccCCCCCCCCCCCCccccccccccc
Q 007792 1 MSVLIVTSLGDIVVDLFVDKCPLTTKNFLKLCK----IKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGEQAR 76 (589)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~l~~----~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~ 76 (589)
|-|.+......|+++|+. .|.|+..|+++.= ...|. .-+|-..|.. +..
T Consensus 13 ~~~~~~~~~~~v~a~L~D--np~Ta~~~~~~LPl~~~~~~~g-~E~y~~~p~~-l~~----------------------- 65 (136)
T 1zx8_A 13 MRVELLFESGKCVIDLNE--EYEVVKLLKEKIPFESVVNTWG-EEIYFSTPVN-VQK----------------------- 65 (136)
T ss_dssp EEEEEECSSCEEEEEEET--TSHHHHHHHHHCSEEEECEESS-SEEEEECSCC-CCC-----------------------
T ss_pred eEEEEeeCCcEEEEEEcC--CHHHHHHHHHHCCcEEEHHHhC-CcEEEECCcc-CCC-----------------------
Confidence 678888888999999984 4889999999872 22353 4444333422 100
Q ss_pred ccCCccccCCCCCCCceEEEeccCCCCCcceEEEEeCCCCCCCCC------CcceEEEEecCHHHHHHHh
Q 007792 77 FFGDEIRVDLKHAKTGTVAMASAGENLNASQFYMTLRDNLDYLDE------KHTIFGEVAEGLETLSRIN 140 (589)
Q Consensus 77 ~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFfI~l~~~~~~ld~------~~~vFG~Vv~G~~vl~~i~ 140 (589)
.| ..... ...|-|++...+. .|.|-+.+ .|...+ .-++||+|++|++.|..+.
T Consensus 66 ---~e-~~~~~-~~~GDIaYw~pgg-----~LaIFyg~-~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v~ 124 (136)
T 1zx8_A 66 ---ME-NPREV-VEIGDVGYWPPGK-----ALCLFFGK-TPMSDDKIQPASAVNVIGKIVEGLEDLKKIK 124 (136)
T ss_dssp ---CS-SEESS-BCTTEEEEEGGGT-----EEEEESSC-CTTCSSSBCCSSCEEEEEEEEECGGGGGGCC
T ss_pred ---CC-CCCcc-CCCCcEEEeCCCC-----EEEEEeCC-CccccCccccCcCcEEEEEEccCHHHHhhCC
Confidence 01 01111 2568888776543 36676666 343332 3678999999988776663
No 258
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.69 E-value=0.032 Score=58.91 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=42.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSK 303 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~ 303 (589)
..+|||. +|..+++.+|.++|++||+|..+.+..++ .-||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3799997 79999999999999999999998887642 26999999999999987743
No 259
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.63 E-value=0.065 Score=47.84 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=29.7
Q ss_pred EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCce
Q 007792 271 SAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNAL 308 (589)
Q Consensus 271 ~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~ 308 (589)
++.|+.+.. +++|||||+|.+.++|++|+..+++..
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 466777644 589999999999999999998887643
No 260
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.08 E-value=0.027 Score=50.05 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=38.0
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEEEecccc
Q 007792 280 TGDSLNYAFIEFENRQACERAYSKM-DNALIDDRRIHVDFSQSV 322 (589)
Q Consensus 280 tg~~~g~aFV~f~~~~~a~~A~~~l-~g~~i~gr~i~V~~a~~~ 322 (589)
..+.+|+++|+|.+.++|++|++.| ||..|+| .|.|.++...
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4567899999999999999999999 9999999 9999988753
No 261
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=92.04 E-value=0.031 Score=49.72 Aligned_cols=93 Identities=20% Similarity=0.415 Sum_probs=47.9
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcC--------HHHH---HHHHHhcCCc--eeCCeEEEEEeccccc
Q 007792 257 EDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFEN--------RQAC---ERAYSKMDNA--LIDDRRIHVDFSQSVS 323 (589)
Q Consensus 257 ~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~--------~~~a---~~A~~~l~g~--~i~gr~i~V~~a~~~~ 323 (589)
+++.++|...|.|+.... .+||+||+-.+ .+++ ..||. ..|+ .-.|..|...+.....
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~-~~g~~~l~eG~~V~f~~~~g~k 72 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMTARAGVALDPPVDVFVHQSKLH-MEGFRSLKEGEAVEFTFKKSAK 72 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEEEETTEEEEEEEEEEEEGGGBC-SSSSCCCCTTCEEEEEEEEETT
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeCccccccCCCCccEEEEhHHhc-ccCCccCCCCCEEEEEEEEccc
Confidence 455567777777654432 45899998752 1121 12221 2332 2356676666654321
Q ss_pred cc---------cccccCCCCCCCCCCCCccCCCCCCCCccCCCC
Q 007792 324 KL---------WNQFRRRDHQTGKGKGCFKCGGLDHIAKDCTGQ 358 (589)
Q Consensus 324 ~~---------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 358 (589)
.. ................||+|+..+|++.+|+..
T Consensus 73 G~~A~~V~~pgg~pv~GS~rrp~~~~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 73 GLESIRVTGPGGVFCIGSERRPKGGDRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp EEEEEEEESGGGCCCCCCTTSCCCSCCCTTTCCSSCCGGGCCSC
T ss_pred cchhhcccccCCccccccccccCCCCcccEeCCccchhhhCCCC
Confidence 11 001111112223345699999999999999863
No 262
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.35 E-value=4.6 Score=43.23 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=44.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 007792 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMD 305 (589)
Q Consensus 243 ~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~ 305 (589)
..++|+ +|..+...+|.++|+.||. ..|.++.+ ..|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 456665 9999999999999999995 45666554 479999999999999998874
No 263
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=75.95 E-value=1.8 Score=25.84 Aligned_cols=19 Identities=42% Similarity=1.052 Sum_probs=17.0
Q ss_pred CCCccCCCCCCCCccCCCC
Q 007792 340 KGCFKCGGLDHIAKDCTGQ 358 (589)
Q Consensus 340 ~~~~~~g~~~~~~~~~~~~ 358 (589)
..||.||..+|++++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4599999999999999876
No 264
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.59 E-value=3.7 Score=31.38 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=43.4
Q ss_pred eEEEec-CCCCCCHHHHHHHhccCC-----CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 007792 244 VLFVCK-LNPVTEDEDLHTIFSRFG-----TVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNALIDDRRIHVD 317 (589)
Q Consensus 244 ~i~V~n-L~~~~te~~L~~~F~~~G-----~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~~i~gr~i~V~ 317 (589)
+|||.. -...+...+|..++..-+ .|-.+.|.. .|.||+... ..|..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 456531 133466778887777544 355666643 489999974 56888999999999999999998
Q ss_pred ecc
Q 007792 318 FSQ 320 (589)
Q Consensus 318 ~a~ 320 (589)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 265
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=70.89 E-value=3.7 Score=27.41 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.0
Q ss_pred CCCCCCccCCCCCCCCccCCCC
Q 007792 337 GKGKGCFKCGGLDHIAKDCTGQ 358 (589)
Q Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~ 358 (589)
.....||.|+..|||+++||..
T Consensus 8 ~~~~~C~~Cgk~GH~ardCP~~ 29 (40)
T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPKK 29 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSSS
T ss_pred CCCCeeeECCCCCcchhhCcCC
Confidence 3456799999999999999987
No 266
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.22 E-value=3.7 Score=29.51 Aligned_cols=21 Identities=38% Similarity=0.944 Sum_probs=17.9
Q ss_pred CCCCccCCCCCCCCccCCCCC
Q 007792 339 GKGCFKCGGLDHIAKDCTGQQ 359 (589)
Q Consensus 339 ~~~~~~~g~~~~~~~~~~~~~ 359 (589)
...||+||..|||+++|+...
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGGG
T ss_pred CCccccCCCcCcccccCCCCC
Confidence 456999999999999998553
No 267
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=64.27 E-value=5.5 Score=28.75 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.0
Q ss_pred CCCCCCccCCCCCCCCccCCCC
Q 007792 337 GKGKGCFKCGGLDHIAKDCTGQ 358 (589)
Q Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~ 358 (589)
.....||.||..|||+++|+..
T Consensus 21 ~~~~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 21 LDRDQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp CCTTBCSSSCCBSSCGGGCTTC
T ss_pred CCCCcceeCCCCCcccccCcCC
Confidence 3456799999999999999986
No 268
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=62.64 E-value=0.98 Score=37.73 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCceEEEecCCCCCCHHH
Q 007792 241 PENVLFVCKLNPVTEDED 258 (589)
Q Consensus 241 ~~~~i~V~nL~~~~te~~ 258 (589)
..++|||+|||+.+|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 446899999999999864
No 269
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=46.38 E-value=15 Score=22.33 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=17.0
Q ss_pred CCCCccCCCCCCCCccCCCC
Q 007792 339 GKGCFKCGGLDHIAKDCTGQ 358 (589)
Q Consensus 339 ~~~~~~~g~~~~~~~~~~~~ 358 (589)
...||.||..||++.+|+..
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 45699999999999999754
No 270
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=42.83 E-value=17 Score=21.26 Aligned_cols=14 Identities=36% Similarity=0.422 Sum_probs=10.2
Q ss_pred CCCCcceEEEEeCC
Q 007792 101 ENLNASQFYMTLRD 114 (589)
Q Consensus 101 ~~~~~sqFfI~l~~ 114 (589)
+.--.|..||||.+
T Consensus 6 eKR~aSSvFITLap 19 (26)
T 2k9u_B 6 EKRVASSVFITLAP 19 (26)
T ss_dssp SSSCEEEEEEEECC
T ss_pred hhheeeeEEEEecC
Confidence 33446779999987
No 271
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=30.06 E-value=2e+02 Score=22.48 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=50.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCC-------ceeCCeEE
Q 007792 242 ENVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDN-------ALIDDRRI 314 (589)
Q Consensus 242 ~~~i~V~nL~~~~te~~L~~~F~~~G~v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g-------~~i~gr~i 314 (589)
.+-|-|-|+|..+-..++.-.....|---.|..+- |-|.|.|.+..+...|+..|-+ .+|.|..+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 46677889999998888876666777555565533 7899999999999999876521 24566666
Q ss_pred EEEe
Q 007792 315 HVDF 318 (589)
Q Consensus 315 ~V~~ 318 (589)
.|--
T Consensus 84 dvis 87 (129)
T 4eyt_A 84 DVIS 87 (129)
T ss_dssp EEEC
T ss_pred eeee
Confidence 6543
No 272
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.94 E-value=1.9e+02 Score=22.63 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=26.7
Q ss_pred eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhcCCc
Q 007792 269 VVSAEIIRDFKTGDSLNYAFIEFENRQACERAYSKMDNA 307 (589)
Q Consensus 269 v~~~~i~~d~~tg~~~g~aFV~f~~~~~a~~A~~~l~g~ 307 (589)
|..+.++.. ..||.||++....++..+|..+.|.
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 555555432 6799999999999999999888874
No 273
>3iyu_X Outer capsid protein VP4; triple layered particle, NEAR atomic resolution, double layered particle, de novo, infectious, icosah virus; HET: NAG; 3.80A {Simian rotavirus A} PDB: 1kri_A
Probab=20.71 E-value=26 Score=37.35 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=42.1
Q ss_pred ceEEEeecCcccccCCCC-CCCCCC-------CCcccccccccccccCCccccCCCCCCCceEEEeccCCCCCcceEE--
Q 007792 40 CLFHTVQKDFTAQTGDPT-GTGTGG-------DSVYKFLYGEQARFFGDEIRVDLKHAKTGTVAMASAGENLNASQFY-- 109 (589)
Q Consensus 40 ~~f~rv~~~~~iq~Gd~~-~~~~~~-------~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~vs~a~~g~~~~~sqFf-- 109 (589)
+.=.-|.||.++|+|=.. ..|.|. .+++.-.|.......|.++-..|.....|+|+-+-. .+.|+
T Consensus 30 tQnVTINPGPFAQTgYAPVnWG~GE~nDSTTVEPvLDGPYQPTtFnpP~~YWiLl~P~~~GVV~E~TN-----ntd~W~A 104 (776)
T 3iyu_X 30 TQNVTINLGPFAQTGYAPVNWGPGETNDSTTVEPVLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTN-----NTDRWLA 104 (776)
T ss_dssp CEECCCCCCCCCCCCCCCC----------------CEEEECSEEECCCTTEEEEECCCSSEEEEEEEC-----SSSCEEE
T ss_pred ccceeECCCccccccccccccCCCccCCCCeeeccCCCCCCCcccCCCCceEEEEccCCCCEEEEeec-----CCceEEE
Confidence 333457899999998433 322221 111111111111122333222334456787765532 22233
Q ss_pred -EEeCCCCCCCCCCcceEEEEec
Q 007792 110 -MTLRDNLDYLDEKHTIFGEVAE 131 (589)
Q Consensus 110 -I~l~~~~~~ld~~~~vFG~Vv~ 131 (589)
|.+.|+.+.-+.+|++||+-++
T Consensus 105 ~ILIEPNV~~~~RqYtiFGeqvq 127 (776)
T 3iyu_X 105 TILVEPNVTSETRSYTLFGTQEQ 127 (776)
T ss_dssp EEEECSSEEEEEEEEEETTEEEE
T ss_pred EEEecCCCCCcceEEEEeeeEEE
Confidence 4556666666778999998764
Done!