Query 007794
Match_columns 589
No_of_seqs 325 out of 1782
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:40:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 9.8E-98 3E-102 815.8 40.0 437 133-581 3-485 (485)
2 2dc0_A Probable amidase; struc 100.0 1.4E-96 5E-101 795.7 37.6 409 136-572 1-433 (434)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 4.1E-95 1.4E-99 792.0 36.4 430 133-579 2-476 (478)
4 1m22_A Peptide amidase, PAM; e 100.0 3.5E-94 1.2E-98 791.1 37.7 437 132-585 7-495 (503)
5 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 3.5E-94 1.2E-98 782.7 33.1 423 136-580 1-467 (471)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 1.1E-93 3.8E-98 785.8 37.1 434 133-582 6-484 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 5.7E-91 2E-95 761.1 27.2 416 132-577 6-466 (476)
8 1o9p_A Malonamidase E2; malona 100.0 9E-90 3.1E-94 737.7 33.7 387 136-573 2-411 (414)
9 3ppm_A Fatty-acid amide hydrol 100.0 2.7E-87 9.3E-92 740.2 31.0 421 132-579 67-572 (573)
10 3a1k_A Amidase; AS family enzy 100.0 6.5E-88 2.2E-92 742.0 18.4 428 137-574 14-504 (521)
11 3shg_B VBHA; ampylation, adeny 37.9 40 0.0014 24.9 4.1 27 139-165 33-59 (61)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=9.8e-98 Score=815.83 Aligned_cols=437 Identities=31% Similarity=0.438 Sum_probs=370.3
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhHhh-hcCCCCCCCCCCeeee
Q 007794 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRY-KKGEPISVLDGVLIAV 211 (589)
Q Consensus 133 ~~~~s~~~l~~~~~sg~~T~~~v~~~~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~-~~G~~~gpL~GvPi~v 211 (589)
+.++|+.+++++|++|++||+||++++|+||++.+ +.+|||+++++|+|+++|+++|+++ ++|++ ||||||||+|
T Consensus 3 l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~v 78 (485)
T 3ip4_A 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETD---PTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGI 78 (485)
T ss_dssp GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEE
T ss_pred cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEE
Confidence 45789999999999999999999999999999886 6899999999999999999999999 89999 9999999999
Q ss_pred eccccCCCCCCCcccccccCCCCCCCcHHHHHHHHHcCCeEEEecCcccccccCCCCCCCCCCCCCCCCCCCCCCCCchH
Q 007794 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291 (589)
Q Consensus 212 KD~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~~L~~aGAIi~GKtnm~E~g~~~~~~n~~~G~~~NP~n~~~~~GGSSgG 291 (589)
||+|+++|++||+||..+.++. +.+||++|++||+||||++||||||||+++.+|.|++||+|+||||++++|||||||
T Consensus 79 KD~~~v~G~~tt~Gs~~~~~~~-~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgG 157 (485)
T 3ip4_A 79 KDNIITNGLETTCASKMLEGFV-PIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGG 157 (485)
T ss_dssp ETTBCBTTBCCCTTSGGGTTCC-CSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred EcCcccCCCccCCCChhhcCCC-CCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccH
Confidence 9999999999999999887654 478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcceeeeccCCCcccccccccCcccccCCCCcccCCCCCCCCCcccccccchhcHHHHHHHHHHHcCCCCCC
Q 007794 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQ 371 (589)
Q Consensus 292 saaaVaag~~p~alGtD~gGSiRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~~~Gp~arsv~Dl~~~~~~~~g~d~~~ 371 (589)
||++||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|
T Consensus 158 sAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d 237 (485)
T 3ip4_A 158 SAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVND 237 (485)
T ss_dssp HHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTC
T ss_pred HHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCcCCCCCccccccccccccceeeeeee----------------------cccCcEEEEeecCchHHHHHHHHHHHHHh
Q 007794 372 QPTVSLPKVSFPLLKSATSISAIKLAKYD----------------------ARYGWKVVEVTIPNIEVMRLAHYLTIGSE 429 (589)
Q Consensus 372 ~~~~~~p~~~~p~~~~~~~l~~l~ig~~~----------------------~~~G~~Vvei~iP~l~~~~~a~~~~i~~E 429 (589)
..+...|...+... ....++++|||+.. +++||+|+++++|.+++....+..++.+|
T Consensus 238 ~~~~~~~~~~~~~~-~~~~~~~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e 316 (485)
T 3ip4_A 238 STSAPVDDVDFTSE-IGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSE 316 (485)
T ss_dssp TTSCCCCCCCCSTT-TTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHH
T ss_pred ccccccCccchhhh-hccCccCcEEEEECCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCcHHHHHHHHHHHHHHH
Confidence 43322221111100 01246789999754 67899999999998877777777778888
Q ss_pred hhhhhHHHHh------------------hccCCCCchhHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHhHhcCC
Q 007794 430 CSTSLSSYLQ------------------KINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAKA 486 (589)
Q Consensus 430 ~~~~l~~~~~------------------~~~~~~l~~~~r~~~~~~~-----~~s~~dyl~a~~~r~~~~~~~~~lf~~~ 486 (589)
+..++..+.. ......+.+.++..+..+. .....+|.++++.|+++++.+.++|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~ 396 (485)
T 3ip4_A 317 ASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENY 396 (485)
T ss_dssp HHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8776543211 0011223444443333332 2223458899999999999999999999
Q ss_pred CEEEccCCCCCccccchhhhccCCcchhhcccccccchhhhhcCCCceeccCccCCCCCceEEEEEcCCCChHHHHHHHH
Q 007794 487 DVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAF 566 (589)
Q Consensus 487 DvIltPttp~~ap~i~~~~~~~g~~d~~~~~~~~~yt~laNl~G~PAisvPvG~~~~GlPvGlQivG~~~~D~~LL~~A~ 566 (589)
|+||+||+|.++|+++... + +.........||.++|++|+|+||||+|++ +|||+||||+|++|+|+.||++|+
T Consensus 397 D~ll~Pt~~~~a~~~~~~~---~--~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlqlvg~~~~d~~lL~~A~ 470 (485)
T 3ip4_A 397 DVVVGPTAPTTAFNLGEEI---D--DPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAY 470 (485)
T ss_dssp SEEEEESSSSSCCBTTTST---T--CHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCccccc---C--ChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeEEEEcCCCCHHHHHHHHH
Confidence 9999999999999986521 1 111111123489999999999999999997 899999999999999999999999
Q ss_pred HHHHhcccCCCCCCc
Q 007794 567 AMQALCISEFRKPKV 581 (589)
Q Consensus 567 ~lE~~~~~~~~~P~~ 581 (589)
++|+.++|+.++|++
T Consensus 471 ~lE~~~~~~~~~p~~ 485 (485)
T 3ip4_A 471 QYETQYNLHDVYEKL 485 (485)
T ss_dssp HHHHHSCCTTTGGGC
T ss_pred HHHHhcCcccCCCCC
Confidence 999999998888764
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-96 Score=795.66 Aligned_cols=409 Identities=28% Similarity=0.405 Sum_probs=363.8
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhHhhhcCCCCCCCCCCeeeeeccc
Q 007794 136 WTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEI 215 (589)
Q Consensus 136 ~s~~~l~~~~~sg~~T~~~v~~~~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~G~~~gpL~GvPi~vKD~~ 215 (589)
+|+.+++++|++|++||+||++++|+||++.+ + +|||+++++|+|+++|+++|+++++|+++||||||||+|||+|
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~---~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~ 76 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQ---D-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLF 76 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTG---G-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTS
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---C-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEecc
Confidence 47899999999999999999999999999976 6 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCCCCCcHHHHHHHHHcCCeEEEecCcccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 007794 216 DCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295 (589)
Q Consensus 216 ~v~G~~tt~Gs~~~~~~~~~~~da~~V~~L~~aGAIi~GKtnm~E~g~~~~~~n~~~G~~~NP~n~~~~~GGSSgGsaaa 295 (589)
|++|++||+||..+ +.++.+|+++|++||+||||++||||||||+++.+|.|++||+|+||||+.++|||||||||++
T Consensus 77 ~v~G~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaa 154 (434)
T 2dc0_A 77 PVKGMPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVA 154 (434)
T ss_dssp CBTTBCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHH
T ss_pred ccCCcccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHH
Confidence 99999999999987 4454789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcceeeeccCCCcccccccccCcccccCCCCcccCCCCCCCCCcccccccchhcHHHHHHHHHHHcCCCCCCCCCc
Q 007794 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 375 (589)
Q Consensus 296 Vaag~~p~alGtD~gGSiRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~~~Gp~arsv~Dl~~~~~~~~g~d~~~~~~~ 375 (589)
||+|++|+|+|||+|||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+ +.|..
T Consensus 155 VAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~-- 231 (434)
T 2dc0_A 155 VALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLE-- 231 (434)
T ss_dssp HHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCC--
T ss_pred HHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 54421
Q ss_pred CCCCCccccccccccccceeeeeee----------------------cccCcEEEEeecCchHHHHHHHHHHHHHhhhhh
Q 007794 376 SLPKVSFPLLKSATSISAIKLAKYD----------------------ARYGWKVVEVTIPNIEVMRLAHYLTIGSECSTS 433 (589)
Q Consensus 376 ~~p~~~~p~~~~~~~l~~l~ig~~~----------------------~~~G~~Vvei~iP~l~~~~~a~~~~i~~E~~~~ 433 (589)
.++++|||+.. +++|++|+++++| +++....+..++..|+...
T Consensus 232 --------------~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p-~~~~~~~~~~~~~~e~~~~ 296 (434)
T 2dc0_A 232 --------------GVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP-LEGVYEVYTRLVRYEAARI 296 (434)
T ss_dssp --------------CCCSCEEEECHHHHTTCSCHHHHHHHHHHHHHTTTTTCEEEECCCC-CTTHHHHHHHHHHHHHHHH
T ss_pred --------------cccCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCC-cHHHHHHHHHHHHHHHHHH
Confidence 12334444321 6789999999998 7666666777778898887
Q ss_pred hHHHHhhccCCCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhHhcCCCEEEccCCCCCccccchhhhc--cCCc
Q 007794 434 LSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALK--TGEL 511 (589)
Q Consensus 434 l~~~~~~~~~~~l~~~~r~~~~~~~~~s~~dyl~a~~~r~~~~~~~~~lf~~~DvIltPttp~~ap~i~~~~~~--~g~~ 511 (589)
+..+++. ..+.+.+.++.++..+..++..+|.++++.|+++++.+.++|+++|+||+||++.++|+++..... .+.
T Consensus 297 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~- 374 (434)
T 2dc0_A 297 HEKALKE-HPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGR- 374 (434)
T ss_dssp SHHHHHH-CGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEE-
T ss_pred HHHHHHh-chhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccch-
Confidence 7776654 445678888888888888999999999999999999999999999999999999999998652110 011
Q ss_pred chhhcccccccchhhhhcCCCceeccCccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhc
Q 007794 512 DYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALC 572 (589)
Q Consensus 512 d~~~~~~~~~yt~laNl~G~PAisvPvG~~~~GlPvGlQivG~~~~D~~LL~~A~~lE~~~ 572 (589)
......++.||.++|++|+|+||||+|+ .+|+|+||||+|++|+|+.||++|+++|+++
T Consensus 375 -~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~~ 433 (434)
T 2dc0_A 375 -KGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQVVGAYGEDGKVLALGGWLEARL 433 (434)
T ss_dssp -EEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred -hhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEEEECCCCchHHHHHHHHHHHHhh
Confidence 1111234679999999999999999999 7899999999999999999999999999864
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=4.1e-95 Score=791.98 Aligned_cols=430 Identities=29% Similarity=0.465 Sum_probs=363.4
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhHhhhcCCCCCCCCCCeeeee
Q 007794 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVK 212 (589)
Q Consensus 133 ~~~~s~~~l~~~~~sg~~T~~~v~~~~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~G~~~gpL~GvPi~vK 212 (589)
+.++|+.+++++|++|++||+||++++|+||++.+ +.+|||+++++|+|+++|+++|++ +||||||||+||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~~d~~------~gpL~GvPi~vK 72 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTE---EKVKAYITPLYGKALKQAESLKER------ELPLFGIPIAVK 72 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHTCCCT------TSTTTTCEEEEE
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CcCcEEEEeChHHHHHHHHhhchh------cCCcCCceEEEE
Confidence 34679999999999999999999999999999986 679999999999999999999976 689999999999
Q ss_pred ccccCCCCCCCcccccccCCCCCCCcHHHHHHHHHcCCeEEEecCcccccccCCCCCCCCCCCCCCCCCCCCCCCCchHH
Q 007794 213 DEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGS 292 (589)
Q Consensus 213 D~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~~L~~aGAIi~GKtnm~E~g~~~~~~n~~~G~~~NP~n~~~~~GGSSgGs 292 (589)
|+|+++|++||+||..+.++. +.+|+++|++||+||||++||||||||+++.+|.|++||+|+||||++++||||||||
T Consensus 73 D~~~~~G~~tt~Gs~~~~~~~-~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs 151 (478)
T 3h0l_A 73 DNILVEGEKTTCASKILENFV-APYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGS 151 (478)
T ss_dssp TTBCCTTSBCCTTCGGGTTCB-CSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHH
T ss_pred cCccCCCCCcCCcCHhhcCCC-CCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHH
Confidence 999999999999999887654 4789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcceeeeccCCCcccccccccCcccccCCCCcccCCCCCCCCCcccccccchhcHHHHHHHHHHHcCCCCCCC
Q 007794 293 AAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 372 (589)
Q Consensus 293 aaaVaag~~p~alGtD~gGSiRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~~~Gp~arsv~Dl~~~~~~~~g~d~~~~ 372 (589)
|++||+|++|+|+|||+|||||+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|+|+|+.|.
T Consensus 152 aaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~ 231 (478)
T 3h0l_A 152 AASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDS 231 (478)
T ss_dssp HHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCT
T ss_pred HHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCcCCCCCccccccccccccceeeeeee----------------------cccCcEEEEeecCchHHHHHHHHHHHHHhh
Q 007794 373 PTVSLPKVSFPLLKSATSISAIKLAKYD----------------------ARYGWKVVEVTIPNIEVMRLAHYLTIGSEC 430 (589)
Q Consensus 373 ~~~~~p~~~~p~~~~~~~l~~l~ig~~~----------------------~~~G~~Vvei~iP~l~~~~~a~~~~i~~E~ 430 (589)
.+...|...+... ....++++|||+.. +++||+|+++++|.+++....+..++.+|+
T Consensus 232 ~~~~~p~~~~~~~-~~~~~~~lrIgv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~v~~p~~~~~~~~~~~~~~~e~ 310 (478)
T 3h0l_A 232 TSAKVPVPEWSEE-VKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKEGFEIKEVSLPHVKYSIPTYYIIAPSEA 310 (478)
T ss_dssp TSCCCCCCCHHHH-TTCCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHH
T ss_pred cccccCccchhhh-hccCCCCCEEEEECCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCcHHHHHHHHHHHHHHHH
Confidence 3322221111000 01246788999753 678999999999988777777888888888
Q ss_pred hhhhHHHHh------------------hccCCCCchhHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHhHhcCCC
Q 007794 431 STSLSSYLQ------------------KINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAKAD 487 (589)
Q Consensus 431 ~~~l~~~~~------------------~~~~~~l~~~~r~~~~~~~-----~~s~~dyl~a~~~r~~~~~~~~~lf~~~D 487 (589)
..++..+.. ......+.+.++..+..+. .....+|.++++.|+++++.+.++|+++|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 390 (478)
T 3h0l_A 311 SSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVD 390 (478)
T ss_dssp HHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 776543211 0011123444444333332 22334688999999999999999999999
Q ss_pred EEEccCCCCCccccchhhhccCCcchhhcccccccchhhhhcCCCceeccCccCCCCCceEEEEEcCCCChHHHHHHHHH
Q 007794 488 VIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFA 567 (589)
Q Consensus 488 vIltPttp~~ap~i~~~~~~~g~~d~~~~~~~~~yt~laNl~G~PAisvPvG~~~~GlPvGlQivG~~~~D~~LL~~A~~ 567 (589)
+||+||+|.++|+++... + +.........||.++|++|+|+||||+|+ .+|||+||||+|++|+|+.||++|++
T Consensus 391 ~ll~Pt~~~~a~~~~~~~---~--~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~D~~LL~~A~~ 464 (478)
T 3h0l_A 391 VIASPTTPTLPFKFGERL---E--NPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQLIGKHWDETTLLQISYL 464 (478)
T ss_dssp EEEEESCSSSCCBTTTTS---S--SHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEEEEEEECTTCHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCccccc---C--ChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 999999999999986521 1 11111112358999999999999999999 78999999999999999999999999
Q ss_pred HHHhcccCCCCC
Q 007794 568 MQALCISEFRKP 579 (589)
Q Consensus 568 lE~~~~~~~~~P 579 (589)
+|+.+.|+.++|
T Consensus 465 lE~~~~~~~~~p 476 (478)
T 3h0l_A 465 WEQKFKHYEKIP 476 (478)
T ss_dssp HHHHSCGGGCCS
T ss_pred HHHhcCcccCCC
Confidence 999998877766
No 4
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=3.5e-94 Score=791.08 Aligned_cols=437 Identities=30% Similarity=0.462 Sum_probs=365.1
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhHhhhcCCCCCCCCCCeeee
Q 007794 132 FFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV 211 (589)
Q Consensus 132 ~~~~~s~~~l~~~~~sg~~T~~~v~~~~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~G~~~gpL~GvPi~v 211 (589)
++.++|+.+++++|++|++|++||++++|+||++.++.++.+|||+++++| |+++|+++|+++++|+++||||||||+|
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~v 85 (503)
T 1m22_A 7 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLL 85 (503)
T ss_dssp TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeEe
Confidence 345679999999999999999999999999999987555789999999988 9999999999999999999999999999
Q ss_pred eccccCCCCCCCcccccccCCCCCCCcHHHHHHHHHcCCeEEEecCcccccc-----cCCCCCCCCCCCCCCCCCCCCCC
Q 007794 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA-----GTSGINPHYGVARNPYDPSKITG 286 (589)
Q Consensus 212 KD~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~~L~~aGAIi~GKtnm~E~g~-----~~~~~n~~~G~~~NP~n~~~~~G 286 (589)
||+|+++|++||+||..+.+. ++ +||++|++||+||||++||||||||++ +.+|+|++||+|+||||++++||
T Consensus 86 KD~~~v~G~~Tt~Gs~~~~~~-~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pG 163 (503)
T 1m22_A 86 KDNINAAPMATSAGSLALQGF-RP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPC 163 (503)
T ss_dssp ETTBCCTTSCCCTTCGGGTTC-CC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCC
T ss_pred ecccccCCCCcCCCCHhhcCC-CC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999988765 45 899999999999999999999999998 78999999999999999999999
Q ss_pred CCchHHHHHHHhCCcceeeeccCCCcccccccccCcccccCCCCcccCCCCCCCCCcccccccchhcHHHHHHHHHHHcC
Q 007794 287 GSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 366 (589)
Q Consensus 287 GSSgGsaaaVaag~~p~alGtD~gGSiRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~~~Gp~arsv~Dl~~~~~~~~g 366 (589)
|||||||++||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|
T Consensus 164 GSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g 243 (503)
T 1m22_A 164 GSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAG 243 (503)
T ss_dssp SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCCc-cccccc--cccccceeeeeee--------------------cccCcEEEEeecCchHHHHHHHH
Q 007794 367 PLPSQQPTVSLPKVS-FPLLKS--ATSISAIKLAKYD--------------------ARYGWKVVEVTIPNIEVMRLAHY 423 (589)
Q Consensus 367 ~d~~~~~~~~~p~~~-~p~~~~--~~~l~~l~ig~~~--------------------~~~G~~Vvei~iP~l~~~~~a~~ 423 (589)
+|+.|..+...|... ..+... ...++++|||+.. +++|++|+++++|.++++...++
T Consensus 244 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~ 323 (503)
T 1m22_A 244 RDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAER 323 (503)
T ss_dssp CCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGGGSTTHHHHHHHHHHHHHHTTCEEEEECCTTTTTTHHHHH
T ss_pred CCCCCccccccccccccchhhhccccCCCCCEEEEECccccCCHHHHHHHHHHHHHHHHcCCEEEEeCCCcHHHHHHHHH
Confidence 988763221111100 011110 1235788998753 67899999999997654444556
Q ss_pred HHHHHhhhhhhHHHHhhcc--------------------CCCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHH--HHh
Q 007794 424 LTIGSECSTSLSSYLQKIN--------------------CSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQI--HRN 481 (589)
Q Consensus 424 ~~i~~E~~~~l~~~~~~~~--------------------~~~l~~~~r~~~~~~~~~s~~dyl~a~~~r~~~~~~--~~~ 481 (589)
.++..|+...+..++.... ...++..++..+..+..++..+|.++++.|+++++. +.+
T Consensus 324 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 403 (503)
T 1m22_A 324 TLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDA 403 (503)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTCHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667787776665554310 123444555555666678889999998888887765 899
Q ss_pred HhcC--CCEEEccCCCCCccccchhhhccCCcchhhcccccccchhhhhcCCCceeccCccCCCCCceEEEEEcCCCChH
Q 007794 482 VFAK--ADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEP 559 (589)
Q Consensus 482 lf~~--~DvIltPttp~~ap~i~~~~~~~g~~d~~~~~~~~~yt~laNl~G~PAisvPvG~~~~GlPvGlQivG~~~~D~ 559 (589)
+|++ +|+||+||+ .++|++... +.. . .+.||.++|++|+|+||||+|++ +|||+||||+|++|+|+
T Consensus 404 ~~~~~~~D~ll~Pt~-~~a~~~~~~----~~~-~-----~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~~d~ 471 (503)
T 1m22_A 404 ALAAHQLDALVAPTT-GVAWPIRSE----GDD-F-----PGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGTAWSEP 471 (503)
T ss_dssp HHHHTTCSEEEEECC-CCCCBTTC-------C-C-----TTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHH
T ss_pred HHhhcCCCEEEeCCC-ccCcccccc----cCc-c-----cccccccchhhCCCeEEeccccC-CCCCeEEEEECCCCChH
Confidence 9975 899999999 566665421 111 0 15789999999999999999997 79999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCccccc
Q 007794 560 TLMHIAFAMQALCISEFRKPKVFHDL 585 (589)
Q Consensus 560 ~LL~~A~~lE~~~~~~~~~P~~~~~~ 585 (589)
.||++|+++|+++.+ ++|+.|.+-
T Consensus 472 ~lL~~A~~~E~~~~~--~~~p~~~~~ 495 (503)
T 1m22_A 472 KLIEMAYAYEQRTRA--RRPPHFDTD 495 (503)
T ss_dssp HHHHHHHHHHHHHCC--CCCCCCCC-
T ss_pred HHHHHHHHHHHhhCC--CCCCCCCCC
Confidence 999999999999765 455555543
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=3.5e-94 Score=782.65 Aligned_cols=423 Identities=30% Similarity=0.503 Sum_probs=360.6
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhHhhhcCCCCCCCCCCeeeeeccc
Q 007794 136 WTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEI 215 (589)
Q Consensus 136 ~s~~~l~~~~~sg~~T~~~v~~~~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~G~~~gpL~GvPi~vKD~~ 215 (589)
+++.+++++|++|++||+||++++|+||++.+ +.+|||++++ |+|+++|+++|+++ |||||||+|||+|
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~-~~al~~A~~~d~~~-------pL~GvPi~vKD~~ 69 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELD---PGLGAFLSLN-ERLLEEAEAVDPGL-------PLAGLVVAVKDNI 69 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEEC-CTTTHHHHTSCCSC-------TTTTCEEEEETTB
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCccEEEEeC-HHHHHHHHhcCccC-------CcCCCeEEEECCc
Confidence 47899999999999999999999999999986 6899999999 99999999999764 9999999999999
Q ss_pred cCCCCCCCcccccccCCCCCCCcHHHHHHHHHcCCeEEEecCcccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 007794 216 DCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295 (589)
Q Consensus 216 ~v~G~~tt~Gs~~~~~~~~~~~da~~V~~L~~aGAIi~GKtnm~E~g~~~~~~n~~~G~~~NP~n~~~~~GGSSgGsaaa 295 (589)
+++|++||+||..+.++. +.+|+++|++||+||||++||||||||+++.+|.|++||+|+||||++++|||||||||++
T Consensus 70 ~~~G~~tt~Gs~~~~~~~-~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaa 148 (471)
T 3kfu_E 70 ATRGLRTTAGSRLLENFV-PPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAA 148 (471)
T ss_dssp CCTTSCCCTTCSTTTTCC-CSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHH
T ss_pred ccCCccccccCHhHcCCC-CCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHH
Confidence 999999999999887654 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcceeeeccCCCcccccccccCcccccCCCCcccCCCCCCCCCcccccccchhcHHHHHHHHHHHcCCCCCCCCCc
Q 007794 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 375 (589)
Q Consensus 296 Vaag~~p~alGtD~gGSiRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~~~Gp~arsv~Dl~~~~~~~~g~d~~~~~~~ 375 (589)
||+|++|+|+|||+|||||+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.|+|+.|..+.
T Consensus 149 VAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~ 228 (471)
T 3kfu_E 149 LAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSL 228 (471)
T ss_dssp HHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCC
T ss_pred HHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988764332
Q ss_pred CCCCCccccccccccccceeeeeee---------------------cccCcEEEEeecCchHHHHHHHHHHHHHhhhhhh
Q 007794 376 SLPKVSFPLLKSATSISAIKLAKYD---------------------ARYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSL 434 (589)
Q Consensus 376 ~~p~~~~p~~~~~~~l~~l~ig~~~---------------------~~~G~~Vvei~iP~l~~~~~a~~~~i~~E~~~~l 434 (589)
..| ..+... ....++++|||++. +++||+|+++++|.+++....+..++.+|+..++
T Consensus 229 ~~~-~~~~~~-~~~~~~~lrIgv~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~v~~p~~~~~~~~~~~~~~~e~~~~~ 306 (471)
T 3kfu_E 229 DLP-PRFQEA-LEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAYYILAPAEASSNL 306 (471)
T ss_dssp CCC-CCTTCC-SCCCCSSCEEEEEGGGTTTCCHHHHHHHHHHHHHHHTTTCEEEEECCTTGGGHHHHHHHHHHHHHHHHG
T ss_pred CCC-cchhhh-hccCCCCCEEEEECCccCCCCHHHHHHHHHHHHHHHHcCCeeeeecCccHHHHHHHHHHHHHHHHHHHH
Confidence 222 111000 01246788998753 6789999999999888777778888888877665
Q ss_pred HHH-----------------HhhccCCCCchhHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHhHhcCCCEEEcc
Q 007794 435 SSY-----------------LQKINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVP 492 (589)
Q Consensus 435 ~~~-----------------~~~~~~~~l~~~~r~~~~~~~-----~~s~~dyl~a~~~r~~~~~~~~~lf~~~DvIltP 492 (589)
..+ +... ...+.+.++..+..+. ..+..+|.++++.|+++++.+.++|+++|+||+|
T Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~P 385 (471)
T 3kfu_E 307 ARYDGTLYGRRAAGEEVEGMMEAT-RALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLP 385 (471)
T ss_dssp GGCSTTTTSCCCCCSSSHHHHHHH-HTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEE
T ss_pred HHhhhhccccccchhhHHHHHHhh-hhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeC
Confidence 433 1111 1225666655444442 2334589999999999999999999999999999
Q ss_pred CCCCCccccchhhhccCCcchhhcccccccchhhhhcCCCceeccCccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhc
Q 007794 493 TTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALC 572 (589)
Q Consensus 493 ttp~~ap~i~~~~~~~g~~d~~~~~~~~~yt~laNl~G~PAisvPvG~~~~GlPvGlQivG~~~~D~~LL~~A~~lE~~~ 572 (589)
|++.++|+++... . ... ......||.+||++|+|+||||+|+ .+|+|+||||+|++|+|+.||++|+++|++.
T Consensus 386 t~~~~a~~~~~~~---~--~~~-~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~ 458 (471)
T 3kfu_E 386 TTPHPAFPFGARR---D--PLA-MYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAPWGEDERLLRAALAFEEAT 458 (471)
T ss_dssp SCSSSCCBTTTTC---S--HHH-HHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred CcCCCCCcccccc---c--hHH-HHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9999999986521 1 010 0111239999999999999999999 8999999999999999999999999999998
Q ss_pred -ccCCCCCC
Q 007794 573 -ISEFRKPK 580 (589)
Q Consensus 573 -~~~~~~P~ 580 (589)
+|+.++|.
T Consensus 459 g~w~~~~p~ 467 (471)
T 3kfu_E 459 ARAHLKAPL 467 (471)
T ss_dssp SCCCCCTTC
T ss_pred cCcccCCCc
Confidence 88888775
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=1.1e-93 Score=785.77 Aligned_cols=434 Identities=23% Similarity=0.327 Sum_probs=367.5
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhHhhhcCCCCCCCCCCeeeee
Q 007794 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVK 212 (589)
Q Consensus 133 ~~~~s~~~l~~~~~sg~~T~~~v~~~~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~G~~~gpL~GvPi~vK 212 (589)
+.+ |+.+++++|++|++|++||++++|+||++.+ +.+|||+++++|+|+++|++ | .||||||||+||
T Consensus 6 ~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~-d--------~gpL~GvPi~vK 72 (493)
T 3a2q_A 6 LWQ-DATAQAELVRSGEISRTELLEATIAHVQAVN---PEINAVIIPLFEKARRESEL-A--------SGPFAGVPYLLK 72 (493)
T ss_dssp TTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHH-C--------CSTTTTCEEEEE
T ss_pred hhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CccCeEEecCHHHHHHHhhh-c--------CCCcCCcEEEEe
Confidence 445 9999999999999999999999999999876 67999999999999999998 7 389999999999
Q ss_pred ccc-cCCCCCCCccccccc--CCCCCCCcHHHHHHHHHcCCeEEEecCcccccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 007794 213 DEI-DCSPYPTTGGTKWLH--KVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSS 289 (589)
Q Consensus 213 D~~-~v~G~~tt~Gs~~~~--~~~~~~~da~~V~~L~~aGAIi~GKtnm~E~g~~~~~~n~~~G~~~NP~n~~~~~GGSS 289 (589)
|+| +++|++||+||..+. +.. +.+||++|++||+||||++||||||||+++.+|.|++||+|+||||++|+|||||
T Consensus 73 D~~~~v~G~~Tt~Gs~~~~~~~~~-~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSS 151 (493)
T 3a2q_A 73 DLTVVSQGDINTSSIKGMKESGYR-ADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSS 151 (493)
T ss_dssp SSSSCCTTSBCCTTCHHHHHHTCB-CSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSS
T ss_pred cCCcCcCCCcccccChhhhhcCCC-CCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCc
Confidence 999 999999999999886 654 5789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCcceeeeccCCCcccccccccCcccccCCCCcccCCCC--C-CCCCcccccccchhcHHHHHHHHHHHcC
Q 007794 290 SGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGV--L-PLNWTVGMVGILAATVEDALVVYAAING 366 (589)
Q Consensus 290 gGsaaaVaag~~p~alGtD~gGSiRiPAa~cGv~GlKPT~Grvs~~g~--~-~~~~~~~~~Gp~arsv~Dl~~~~~~~~g 366 (589)
||||++||+|++|+|+|||+|||||+||+||||||||||+||||..|+ . +.++++|++|||||||+|+++++++|.|
T Consensus 152 gGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g 231 (493)
T 3a2q_A 152 GGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSG 231 (493)
T ss_dssp HHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBS
T ss_pred HHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999988 4 7778899999999999999999999999
Q ss_pred CCCCCCCCcCCCCCccccccc-cccccceeeeeee------------------------cccCcEEEEeecCchH--HHH
Q 007794 367 PLPSQQPTVSLPKVSFPLLKS-ATSISAIKLAKYD------------------------ARYGWKVVEVTIPNIE--VMR 419 (589)
Q Consensus 367 ~d~~~~~~~~~p~~~~p~~~~-~~~l~~l~ig~~~------------------------~~~G~~Vvei~iP~l~--~~~ 419 (589)
+|+.|..+...|. .+|... ...++++|||+.. +++|++|+++++|.+. ++.
T Consensus 232 ~d~~d~~~~~~p~--~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~~~~~~~~~ 309 (493)
T 3a2q_A 232 HRPGDTFCAPTAS--RPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVNDAYPEALGDRSFL 309 (493)
T ss_dssp CCTTCSCCCCCCS--SCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCCGGGGCCTHH
T ss_pred CCCCCcccccCCC--cchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCccCHHHHH
Confidence 9887643221111 122211 1235667777521 6789999999988444 455
Q ss_pred HHHHHHHHHhhhhhhHHHHhh----ccCCCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhHh-cCCCEEEccCC
Q 007794 420 LAHYLTIGSECSTSLSSYLQK----INCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVF-AKADVIVVPTT 494 (589)
Q Consensus 420 ~a~~~~i~~E~~~~l~~~~~~----~~~~~l~~~~r~~~~~~~~~s~~dyl~a~~~r~~~~~~~~~lf-~~~DvIltPtt 494 (589)
..+..++..|+...+..+.+. .....+.+.++..+..+..++..+|.++++.|+++++.+.++| +++|+||+||+
T Consensus 310 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~Pt~ 389 (493)
T 3a2q_A 310 KDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTV 389 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC
Confidence 556667777887644333221 1234567788888888899999999999999999999999999 99999999999
Q ss_pred CCCccccchhhhc-----cCC-cc-hhhcccccccchhhhhcCCCceeccCccCCCCCceEEEEEcCCCChHHHHHHHHH
Q 007794 495 GVTAYEIKDDALK-----TGE-LD-YIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFA 567 (589)
Q Consensus 495 p~~ap~i~~~~~~-----~g~-~d-~~~~~~~~~yt~laNl~G~PAisvPvG~~~~GlPvGlQivG~~~~D~~LL~~A~~ 567 (589)
+.++|+++..... .+. .+ ......++.||.+||++|+|+||||+|++.+|||+||||+|++|+|+.||++|++
T Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~A~~ 469 (493)
T 3a2q_A 390 TRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQ 469 (493)
T ss_dssp SSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHHHHH
T ss_pred CCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHHHHH
Confidence 9999998653110 000 00 1112234679999999999999999999989999999999999999999999999
Q ss_pred HHHhcccCCCCCCcc
Q 007794 568 MQALCISEFRKPKVF 582 (589)
Q Consensus 568 lE~~~~~~~~~P~~~ 582 (589)
+|+.+.+..++|+++
T Consensus 470 lE~~~~~~~~~p~~~ 484 (493)
T 3a2q_A 470 LEGALPWVARRPQLL 484 (493)
T ss_dssp HHHHSCCTTCCCGGG
T ss_pred HHHhcCcccCCCCCC
Confidence 999998887888764
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=5.7e-91 Score=761.11 Aligned_cols=416 Identities=29% Similarity=0.442 Sum_probs=344.4
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhHhhhcCCCCCCCCCCeeee
Q 007794 132 FFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV 211 (589)
Q Consensus 132 ~~~~~s~~~l~~~~~sg~~T~~~v~~~~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~G~~~gpL~GvPi~v 211 (589)
++.++|+.++ |++|++|++||++++|+||++.+ +.+|||+++++|+++ |+ + ||||||||+|
T Consensus 6 ~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~al------d~-----~--gpL~GvPi~v 66 (476)
T 2gi3_A 6 DFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLD---PHVKAFISVRENVSV------EK-----K--GKFWGIPVAI 66 (476)
T ss_dssp CGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHH---HHHCCEEEECCCCCC------CC-----C--STTTTCEEEE
T ss_pred ccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhC---CceeEEEecChhhhh------hc-----c--CCcCCceEEE
Confidence 3456789888 99999999999999999999886 679999999988776 22 2 8999999999
Q ss_pred eccccCCCCCCCcccccccCCCCCCCcHHHHHHHHHcCCeEEEecCcccccccCCCCCCCCCCCCCCCCCCCCCCCCchH
Q 007794 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291 (589)
Q Consensus 212 KD~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~~L~~aGAIi~GKtnm~E~g~~~~~~n~~~G~~~NP~n~~~~~GGSSgG 291 (589)
||+|+++|++||+||..+.+.. +.+||++|++||+||||++||||||||+++.+|.|++||+|+||||+.++|||||||
T Consensus 67 KD~~~v~G~~Tt~Gs~~~~~~~-~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 145 (476)
T 2gi3_A 67 KDNILTLGMRTTCASRILENYE-SVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGG 145 (476)
T ss_dssp ETTBCCSSSCCCTTCGGGTTCC-CCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred EcCccCCCCccCccChhhcCCC-CCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHH
Confidence 9999999999999999887654 478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcceeeeccCCCcccccccccCcccccCCCCcccCCCCCCCCCcccccccchhcHHHHHHHHHHHcCCCCCC
Q 007794 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQ 371 (589)
Q Consensus 292 saaaVaag~~p~alGtD~gGSiRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~~~Gp~arsv~Dl~~~~~~~~g~d~~~ 371 (589)
||++||+|++|+|+|||+|||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+|+.|
T Consensus 146 sAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d 225 (476)
T 2gi3_A 146 SAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDEND 225 (476)
T ss_dssp HHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTB
T ss_pred HHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998866
Q ss_pred CCCcCCCCCccccccc-cccccceeeeeee----------------------cccCcEEEEeecCchHHHHHHHHHHHHH
Q 007794 372 QPTVSLPKVSFPLLKS-ATSISAIKLAKYD----------------------ARYGWKVVEVTIPNIEVMRLAHYLTIGS 428 (589)
Q Consensus 372 ~~~~~~p~~~~p~~~~-~~~l~~l~ig~~~----------------------~~~G~~Vvei~iP~l~~~~~a~~~~i~~ 428 (589)
..+...|. .+... ...++++|||+.. +++|++|+++++|.+.+....+..+..+
T Consensus 226 ~~~~~~p~---~~~~~~~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~ 302 (476)
T 2gi3_A 226 ATTVNRKV---DFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIAPA 302 (476)
T ss_dssp TTCCSCCC---CSSTTTTSCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHH
T ss_pred ccccCCCc---chhhhhhcCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 43221111 11110 1235778888743 6789999999999876666666667777
Q ss_pred hhhhhhHHHH-----------------hhccCCCCchhHHHHHHhhcCCC-----HHHHHHHHHHHHHHHHHHHhHhcCC
Q 007794 429 ECSTSLSSYL-----------------QKINCSDQGWDARVALSVYGSFS-----SQEYIKAQKIRNHQMQIHRNVFAKA 486 (589)
Q Consensus 429 E~~~~l~~~~-----------------~~~~~~~l~~~~r~~~~~~~~~s-----~~dyl~a~~~r~~~~~~~~~lf~~~ 486 (589)
|+...+..+. .......+.+.++..+..+..++ ..+|.++++.|+++++.+.++|+++
T Consensus 303 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~ 382 (476)
T 2gi3_A 303 EASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQY 382 (476)
T ss_dssp HHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8776653321 11112234555555554444333 2378899999999999999999999
Q ss_pred CEEEccCCCCCccccchhhhccCCcchhhcccccccchhhhhcCCCceeccCccCCCCCceEEEEEcCCCChHHHHHHHH
Q 007794 487 DVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAF 566 (589)
Q Consensus 487 DvIltPttp~~ap~i~~~~~~~g~~d~~~~~~~~~yt~laNl~G~PAisvPvG~~~~GlPvGlQivG~~~~D~~LL~~A~ 566 (589)
|+||+||++.++|++++. +. .. .......||.++|++|+|+||||+|++ +|||+||||+|++|+|+.||++|+
T Consensus 383 D~ll~Pt~~~~a~~~~~~----~~-~~-~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~~d~~lL~~A~ 455 (476)
T 2gi3_A 383 DAILTPTSPVTAFKIGEI----KD-PL-TYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVIGRRFADGKVFRIAR 455 (476)
T ss_dssp SEEEEESCSSCCCBTTTC----CC-HH-HHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECCTTCHHHHHHHHH
T ss_pred CEEEeCCCCCCCCccccc----cc-ch-hhhhccceeccccccCCceEEEecccC-CCCCeEEEEEcCCCCHHHHHHHHH
Confidence 999999999999998641 11 01 111124689999999999999999997 799999999999999999999999
Q ss_pred HHHHhcccCCC
Q 007794 567 AMQALCISEFR 577 (589)
Q Consensus 567 ~lE~~~~~~~~ 577 (589)
++|+++.|+++
T Consensus 456 ~lE~~~~~~~~ 466 (476)
T 2gi3_A 456 AIEKNSPYNEN 466 (476)
T ss_dssp HHHHHCTTSBT
T ss_pred HHHHhcCcccc
Confidence 99999876543
No 8
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=9e-90 Score=737.74 Aligned_cols=387 Identities=27% Similarity=0.392 Sum_probs=341.2
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhHhhhcCCCCCCCCCCeeeeeccc
Q 007794 136 WTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEI 215 (589)
Q Consensus 136 ~s~~~l~~~~~sg~~T~~~v~~~~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~G~~~gpL~GvPi~vKD~~ 215 (589)
+|+.+++++|++|++|++||++++|+||++.+ +.+|||+++++|++ + ++.||||||||+|||+|
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~a-~------------~~~gpL~GvPi~vKD~~ 65 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEARE---KEVHAFVRHDKSAR-A------------QASGPLRGIAVGIKDII 65 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECTTCC-C------------CSSSTTTTCEEEEETTB
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---ccccEEEEeCHHHh-c------------ccCCCcCCCEEEEEccc
Confidence 58899999999999999999999999999876 67999999988765 1 45799999999999999
Q ss_pred cCCCCCCCcccccccCCCCCCCcHHHHHHHHHcCCeEEEecCcccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 007794 216 DCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295 (589)
Q Consensus 216 ~v~G~~tt~Gs~~~~~~~~~~~da~~V~~L~~aGAIi~GKtnm~E~g~~~~~~n~~~G~~~NP~n~~~~~GGSSgGsaaa 295 (589)
|++|++||+||..+.+.. +.+||++|++||+||||++||||||||++ .|+ |+|+||||++|+|||||||||++
T Consensus 66 ~v~G~~tt~Gs~~~~~~~-~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaa 138 (414)
T 1o9p_A 66 DTANMPTEMGSEIYRGWQ-PRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAA 138 (414)
T ss_dssp CCSSSCCCTTSGGGTTCC-CSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHH
T ss_pred ccCCcccCcCCHhhccCC-CCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHH
Confidence 999999999999887654 46899999999999999999999999998 455 99999999999999999999999
Q ss_pred HHhCCcceeeeccCCCcccccccccCcccccCCCCcccCCCCCCCCCcccccccchhcHHHHHHHHHHHcCCCCCCCCCc
Q 007794 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 375 (589)
Q Consensus 296 Vaag~~p~alGtD~gGSiRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~~~Gp~arsv~Dl~~~~~~~~g~d~~~~~~~ 375 (589)
||+|++|+|+|||+|||||+||+||||||||||+||+|+.|+.|+++++|++|||||||+|+++++++|.|++...
T Consensus 139 VAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~---- 214 (414)
T 1o9p_A 139 VGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFS---- 214 (414)
T ss_dssp HHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGS----
T ss_pred HHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865110
Q ss_pred CCCCCccccccccccccceeeeeee----------------------cccCcEEEEeecCch-HHHHHHHHHHHHHhhhh
Q 007794 376 SLPKVSFPLLKSATSISAIKLAKYD----------------------ARYGWKVVEVTIPNI-EVMRLAHYLTIGSECST 432 (589)
Q Consensus 376 ~~p~~~~p~~~~~~~l~~l~ig~~~----------------------~~~G~~Vvei~iP~l-~~~~~a~~~~i~~E~~~ 432 (589)
+ ....+++|||++. +++|++|+++++|.. +++...+..++.+|+..
T Consensus 215 --~---------~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~e~~~ 283 (414)
T 1o9p_A 215 --G---------IVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHR 283 (414)
T ss_dssp --S---------CCCCSSCEEEECCCGGGCCCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --c---------ccCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHHHHHHHHHHH
Confidence 0 0113445665432 678999999998853 55555666677889888
Q ss_pred hhHHHHhhccCCCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhHhcCCCEEEccCCCCCccccchhhhccCCcc
Q 007794 433 SLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELD 512 (589)
Q Consensus 433 ~l~~~~~~~~~~~l~~~~r~~~~~~~~~s~~dyl~a~~~r~~~~~~~~~lf~~~DvIltPttp~~ap~i~~~~~~~g~~d 512 (589)
.+..+++. ..+.+.+.++.++..+..++..+|.++++.|+++++.+.++|+++|+||+||++.++|+++... .+
T Consensus 284 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~--~~--- 357 (414)
T 1o9p_A 284 ALAWEFSE-HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALAS--TG--- 357 (414)
T ss_dssp HTHHHHHH-SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCC--CC---
T ss_pred HHHHHHHh-ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccC--Cc---
Confidence 88777765 4556788888888889999999999999999999999999999999999999999999885421 01
Q ss_pred hhhcccccccchhhhhcCCCceeccCccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhcc
Q 007794 513 YIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCI 573 (589)
Q Consensus 513 ~~~~~~~~~yt~laNl~G~PAisvPvG~~~~GlPvGlQivG~~~~D~~LL~~A~~lE~~~~ 573 (589)
...||.+||++|+|+||||+|++. |+|+||||+|++|+|+.||++|+++|+++.
T Consensus 358 ------~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~~~~d~~lL~~a~~le~~~~ 411 (414)
T 1o9p_A 358 ------DPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIARFGNDAHALATAWFLEDALA 411 (414)
T ss_dssp ------CGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred ------ccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 136899999999999999999988 999999999999999999999999999864
No 9
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.7e-87 Score=740.22 Aligned_cols=421 Identities=23% Similarity=0.306 Sum_probs=339.1
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhHhhhcCCCCCCCCCCeeee
Q 007794 132 FFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV 211 (589)
Q Consensus 132 ~~~~~s~~~l~~~~~sg~~T~~~v~~~~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~G~~~gpL~GvPi~v 211 (589)
.+..+|+.+++++|++|++|++||+++||+||++.+ +.+|||+++..| ++++|++.++ .||||||||+|
T Consensus 67 ~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~---~~~na~~~~~~~-a~~~a~~~~~-------~gpL~GvPi~v 135 (573)
T 3ppm_A 67 ALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVN---KGTNCVTSYLTD-CETQLSQAPR-------QGLLYGVPVSL 135 (573)
T ss_dssp HHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECTT-HHHHHHHCCT-------TCTTTTCEEEE
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CccCEEEEECHH-HHHHHHhhhh-------cCCcCCCeEEE
Confidence 345689999999999999999999999999999876 679999999865 5667766543 28999999999
Q ss_pred eccccCCCCCCCcccccccCCCCCCCcHHHHHHHHHcCCeEEEecCcccccccCCCCCCCCCCCCCCCCCCCCCCCCchH
Q 007794 212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291 (589)
Q Consensus 212 KD~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~~L~~aGAIi~GKtnm~E~g~~~~~~n~~~G~~~NP~n~~~~~GGSSgG 291 (589)
||+|+++|++||+||..+.+. ++.+||++|++|++||||++||||||||+|+.++.|++||+|+||||++++|||||||
T Consensus 136 KD~~~~~G~~tt~Gs~~~~~~-~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 214 (573)
T 3ppm_A 136 KECFSYKGHDSTLGLSLNEGM-PSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGG 214 (573)
T ss_dssp ETTBCCBTCCCCTTCGGGTTC-CBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHH
T ss_pred EcccCCCCCCcCCcChhhcCC-CCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCch
Confidence 999999999999999987665 4678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcceeeeccCCCcccccccccCcccccCCCCcccCCCCCCCCCc----ccccccchhcHHHHHHHHHHHcCC
Q 007794 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWT----VGMVGILAATVEDALVVYAAINGP 367 (589)
Q Consensus 292 saaaVaag~~p~alGtD~gGSiRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~----~~~~Gp~arsv~Dl~~~~~~~~g~ 367 (589)
|||+||+|++++|+|||+|||||+||+||||||||||+||+|+.|+.+.+++ +|++|||||||+|+++++++|+++
T Consensus 215 saaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~ 294 (573)
T 3ppm_A 215 EGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCE 294 (573)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSH
T ss_pred HHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999988765 899999999999999999999986
Q ss_pred CCCCCCCcCCCC-Cccccccc-cccccceeeeeee----------------------cccCcEEEEeecCchHHHHHH-H
Q 007794 368 LPSQQPTVSLPK-VSFPLLKS-ATSISAIKLAKYD----------------------ARYGWKVVEVTIPNIEVMRLA-H 422 (589)
Q Consensus 368 d~~~~~~~~~p~-~~~p~~~~-~~~l~~l~ig~~~----------------------~~~G~~Vvei~iP~l~~~~~a-~ 422 (589)
|+ +..+|. .+.+|... ....+++|||++. +++||+|+++++|.+.+.... +
T Consensus 295 d~----~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~ 370 (573)
T 3ppm_A 295 HL----FTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLS 370 (573)
T ss_dssp HH----HHHCTTSCCCCCCHHHHTCCCCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHHTTCEEEECCCTTHHHHHHTHH
T ss_pred cc----cccCCCCCccccchhhcccCCCCEEEEEcccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHH
Confidence 53 111121 22344321 1246789999864 678999999999987764332 2
Q ss_pred HHHHHHhhhhhhHHHHhhccC-------------------------CCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 007794 423 YLTIGSECSTSLSSYLQKINC-------------------------SDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQ 477 (589)
Q Consensus 423 ~~~i~~E~~~~l~~~~~~~~~-------------------------~~l~~~~r~~~~~~~~~s~~dyl~a~~~r~~~~~ 477 (589)
...+.+|....+...++.... ..+.+.....+..+...+..+|.+.+..|.++++
T Consensus 371 ~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~ 450 (573)
T 3ppm_A 371 TGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQ 450 (573)
T ss_dssp HHHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 223334443333222211000 0111222223344556788899998888888888
Q ss_pred HHHhHhc--CCCEEEccCCCCCccccchhhhccCCcchhhcccccccchhhhhcCCCceeccCccC--------------
Q 007794 478 IHRNVFA--KADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYD-------------- 541 (589)
Q Consensus 478 ~~~~lf~--~~DvIltPttp~~ap~i~~~~~~~g~~d~~~~~~~~~yt~laNl~G~PAisvPvG~~-------------- 541 (589)
.+.+.|+ ++|+||||+ +.++++++... .......||.+||++|+||++||+|+.
T Consensus 451 ~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~---------~~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~ 520 (573)
T 3ppm_A 451 SVIAQWKAMNLDVLLTPM-LGPALDLNTPG---------RATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGY 520 (573)
T ss_dssp HHHHHHHHTTCSEEEEEC-CCSCCBTTCGG---------GCGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCS
T ss_pred HHHHHHhhcCCCEeeCCC-CCCCcCCcccc---------ccccccchhhhhHhhCCCeEEEecccccccccccccccccc
Confidence 8888885 599999999 45777765310 112236799999999999999999964
Q ss_pred ---------------CCCCceEEEEEcCCCChHHHHHHHHHHHHhcccCCCCC
Q 007794 542 ---------------TAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKP 579 (589)
Q Consensus 542 ---------------~~GlPvGlQivG~~~~D~~LL~~A~~lE~~~~~~~~~P 579 (589)
.+|+||||||||++|+|++||++|+.+|+++.. +|+|
T Consensus 521 ~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~-~~~~ 572 (573)
T 3ppm_A 521 FGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTP-QKQP 572 (573)
T ss_dssp SCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCT-TSCC
T ss_pred cchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc-ccCC
Confidence 269999999999999999999999999999875 3544
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=6.5e-88 Score=741.97 Aligned_cols=428 Identities=23% Similarity=0.337 Sum_probs=333.9
Q ss_pred CHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhCCCCCceEEEE-ecCHHHHHHHHHHHhHh---------hhcCCCCCCCC
Q 007794 137 TVLDYSKAYSSGDITP-RMVAERFIAAVRESSNPPMKMSFFI-NYNEEDILKQATESTLR---------YKKGEPISVLD 205 (589)
Q Consensus 137 s~~~l~~~~~sg~~T~-~~v~~~~l~~i~~~~~~~~~~~a~~-~~~~~~al~~A~~~d~r---------~~~G~~~gpL~ 205 (589)
++.+++..+.+++++. +++++++++++++.+. ..|+++ .+..+++ .++.+.|+. ..+|++.||||
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~ 89 (521)
T 3a1k_A 14 AARHYGITLDKTARLEWPALIDGALGSYDVVDQ---LYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLT 89 (521)
T ss_dssp HHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHH---HHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTT
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHHHHHh---hhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCC
Confidence 5556666677777777 7888888877765431 122333 2233333 334444431 12588899999
Q ss_pred CCeeeeeccccCCCCCCCcccccccCCCCCCCcHHHHHHHHHcCCeEEEecCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 007794 206 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKIT 285 (589)
Q Consensus 206 GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~da~~V~~L~~aGAIi~GKtnm~E~g~~~~~~n~~~G~~~NP~n~~~~~ 285 (589)
||||+|||+|+++|++||+||..+.++. +.+||++|++||+||||++||||||||+++.+|.|++||+|+||||++|+|
T Consensus 90 GvPi~vKD~i~v~G~~Tt~Gs~~~~~~~-~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~p 168 (521)
T 3a1k_A 90 GRRVAIKDNVTVAGVPMMNGSRTVEGFT-PSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREA 168 (521)
T ss_dssp TCEEEEETTBCCTTSCBCTTCTTTTTBC-CSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEEEC
T ss_pred CCEEEEEcCcccCCcccCCCChhhcCCC-CCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCCCC
Confidence 9999999999999999999999887654 478999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhCCcceeeeccCCCcccccccccCcccccCCCCcccCCCCCCCCCcccccccchhcHHHHHHHHHHHc
Q 007794 286 GGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAIN 365 (589)
Q Consensus 286 GGSSgGsaaaVaag~~p~alGtD~gGSiRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~~~Gp~arsv~Dl~~~~~~~~ 365 (589)
||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+
T Consensus 169 GGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vla 248 (521)
T 3a1k_A 169 GGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIA 248 (521)
T ss_dssp CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcC-CCCCccccccc-cccccceeeeeee-----------------------cccCcEEEEeecCchHHHHH
Q 007794 366 GPLPSQQPTVS-LPKVSFPLLKS-ATSISAIKLAKYD-----------------------ARYGWKVVEVTIPNIEVMRL 420 (589)
Q Consensus 366 g~d~~~~~~~~-~p~~~~p~~~~-~~~l~~l~ig~~~-----------------------~~~G~~Vvei~iP~l~~~~~ 420 (589)
|+|+.|..+.. .|.. ++... ...++++|||+.. +++|++|+++++|.+.+...
T Consensus 249 g~d~~D~~~~~~~~~~--~~~~~l~~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~Ga~v~ev~~p~~~~~~~ 326 (521)
T 3a1k_A 249 GRDGNDPRQADSVEAG--DYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIPWHLHAFH 326 (521)
T ss_dssp SCCSSCTTSCTTCCCC--CSSTTTTSCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTCEEEEECCTHHHHHHH
T ss_pred CCCCCCccccccCCCc--chhhhhccCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCchHhHHH
Confidence 99876643211 1111 12211 1236788888732 67899999999997665444
Q ss_pred HHHHHHHHhhhhh----------------------hHHHHhhccCCCCchhHHHHHHhh----cCCCHHHHHHHHHHHHH
Q 007794 421 AHYLTIGSECSTS----------------------LSSYLQKINCSDQGWDARVALSVY----GSFSSQEYIKAQKIRNH 474 (589)
Q Consensus 421 a~~~~i~~E~~~~----------------------l~~~~~~~~~~~l~~~~r~~~~~~----~~~s~~dyl~a~~~r~~ 474 (589)
.+..+...+...+ +..+... +.+.+.+.++..+..+ ..++..+|.++++.|++
T Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~a~~~r~~ 405 (521)
T 3a1k_A 327 IWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQ-HADALSETVKLVALTGHHGITTLGGASYGKARNLVPL 405 (521)
T ss_dssp HHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHH-SGGGSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhh-hhhhcCHHHHHHHHhchhhhccCCHHHHHHHHHHHHH
Confidence 4433332222111 1111111 2345666666555443 35677799999999999
Q ss_pred HHHHHHhHhcCCCEEEccCCCCCccccchhhhccCCcchhhcccccccchhhhhcCCCceeccCccCCCCCceEEEEEcC
Q 007794 475 QMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGK 554 (589)
Q Consensus 475 ~~~~~~~lf~~~DvIltPttp~~ap~i~~~~~~~g~~d~~~~~~~~~yt~laNl~G~PAisvPvG~~~~GlPvGlQivG~ 554 (589)
+++.+.++|+++|+||+||+|.++|++++..... .........++.||.++|++|+|+||||+|+ .+|||+||||+|+
T Consensus 406 ~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~-~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~ 483 (521)
T 3a1k_A 406 ARAAYDTALRQFDVLVMPTLPYVASELPAKDVDR-ATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGR 483 (521)
T ss_dssp HHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCH-HHHHHHHHTTCTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECS
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCcccccccCch-hhHHHHHHhhhcccccchhcCCCcEEeeccc-CCCCCeeEEEEcC
Confidence 9999999999999999999999999986521000 0011112235678999999999999999999 6899999999999
Q ss_pred CCChHHHHHHHHHHHH-hccc
Q 007794 555 PWSEPTLMHIAFAMQA-LCIS 574 (589)
Q Consensus 555 ~~~D~~LL~~A~~lE~-~~~~ 574 (589)
+|+|+.||++|+++|+ ...|
T Consensus 484 ~~~d~~LL~~A~~~E~~~~~~ 504 (521)
T 3a1k_A 484 HFDDATVLRVGRAFEKLRGAF 504 (521)
T ss_dssp TTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHhhccc
Confidence 9999999999999999 6544
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=37.92 E-value=40 Score=24.92 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 007794 139 LDYSKAYSSGDITPRMVAERFIAAVRE 165 (589)
Q Consensus 139 ~~l~~~~~sg~~T~~~v~~~~l~~i~~ 165 (589)
.+..+.+-.|++|..++++.+.+||++
T Consensus 33 l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 33 VAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 366788889999999999999999985
Done!