RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 007794
(589 letters)
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 322 bits (827), Expect = e-104
Identities = 153/469 (32%), Positives = 228/469 (48%), Gaps = 40/469 (8%)
Query: 135 RWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILK--QATEST 192
T + + + +++ + E ++A + E+ NP + F+ + E L +A +
Sbjct: 6 ELTAAELAALLRAKELSAVELVEAYLARI-EALNPDLN--AFVAVDPEAALALAEAAAAD 62
Query: 193 LRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAIL 252
R GEP+ L GV IAVKD ID + PTT G+K L P DA V RLR GA++
Sbjct: 63 ARLAAGEPLGPLAGVPIAVKDNIDTAGLPTTAGSKALEDYVP-PYDATVVERLRAAGAVI 121
Query: 253 VGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
+GKTNM E G+S N +G RNP++ ++ GGSS GSAA VAAGL P+ALG D GGS
Sbjct: 122 LGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGS 181
Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 372
+R+PAA CG+VG KPT+GR+ GV+PL ++ +G LA TV DA ++ I GP P
Sbjct: 182 IRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDS 241
Query: 373 PTVSLPKVSFPLLKSATSISAIKLA---KYD--------------------ARYGWKVVE 409
P P V L + +++ + G +VVE
Sbjct: 242 PLPPPPPVPPALAG--KDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVE 299
Query: 410 VTIPN-IEVMRLAHY---LTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEY 465
V++P + LA Y G + K G + + + + S Y
Sbjct: 300 VSLPLLSDDYALAAYYLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGY 359
Query: 466 IKAQKIRNHQMQIHR---NVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRY 522
A R + I R +F + DV++ PTT A +I + + +Y L +
Sbjct: 360 YDAYYRRAQKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMY--LLDVF 417
Query: 523 QIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 571
+ N GLPA++VP G+ GLP+GLQ IG + + TL+ +A A++
Sbjct: 418 TVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQA 466
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 288 bits (739), Expect = 1e-91
Identities = 150/444 (33%), Positives = 219/444 (49%), Gaps = 52/444 (11%)
Query: 155 VAERFIAAVRESSNPPMKMSFFINYNE-EDILKQATESTLRYKKGEPISVLDGVLIAVKD 213
+ E ++ E++NP + + + E K A + R +KG L GV I++KD
Sbjct: 2 LVEAYLDRA-EAANPKLNAFVTVFFEEALAQAKAADKRRARKEKG----PLHGVPISLKD 56
Query: 214 EIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYG 273
ID PTT G+K + P DA V RLR GA+++GKTNM E G++ N +G
Sbjct: 57 NIDVKGVPTTAGSK-ALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFG 115
Query: 274 VARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIP 333
RNP+D S+ GGSS GSAA VAAGL P+A+G D GGS+R+PAA CG+VG KPT+GR+
Sbjct: 116 PTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVS 175
Query: 334 LSGVLPLNWTVGMVGILAATVEDALVVYAAINGP---LPSQQPTVSLP------------ 378
GV+P + ++ VG LA TVEDA ++ I G P+ P+
Sbjct: 176 RYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPDFAEPLKKSLKGL 235
Query: 379 KVSFPLLKSATSISA------IKLAKYDARYGWKVVEVTIPNIEVMRLAHYLTIGSECST 432
++ P S+ K A G +VVEV P+++ +Y+ +E S+
Sbjct: 236 RIGVPREDFYFSLDPEVQRAVRKAAAALEALGHEVVEVEPPSLKHALPLYYIIAPAEASS 295
Query: 433 SLSSYLQKI------NCSDQGWDARV-----ALSVYGSFSSQEYIKAQKIRNHQMQIHRN 481
+LS + D+ R+ ALS +S Y+KAQK+R +
Sbjct: 296 NLSDLDELYPRIRDELLGDE-VKRRIELGAYALSAG--YSGAYYLKAQKVRRLLRREFAG 352
Query: 482 VFAKADVIVVPTTGVTAYEIKDDALKTGE----LDYIYGAALVRYQIAGNFLGLPAVTVP 537
+F + DV++ PTT A + + A LD+ N GLPA+++P
Sbjct: 353 LFEELDVLLSPTTPTPAPRLGEAADSPTVLYNLLDFTANTVPA------NLAGLPAISLP 406
Query: 538 VGYDTAGLPIGLQFIGKPWSEPTL 561
G+ GLP+GLQ IG P + TL
Sbjct: 407 AGFSEDGLPVGLQIIGPPGDDETL 430
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 275 bits (706), Expect = 2e-86
Identities = 155/475 (32%), Positives = 235/475 (49%), Gaps = 70/475 (14%)
Query: 147 SGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
+ +I+ + + ++ E +P K++ FI EE+ L QA + + GE L G
Sbjct: 3 NKEISAVELTQAYLDR-IEEVDP--KLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAG 58
Query: 207 VLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTS 266
+ IA+KD I TT +K L P DA V +L+ GA+++GKTNM E G+S
Sbjct: 59 IPIAIKDNICTKGIRTTCASKILENYVP-PYDATVVEKLKAAGAVILGKTNMDEFAMGSS 117
Query: 267 GINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFK 326
N +G +NP+D ++ GGSS GSAA VAAGL P ALG D GGS+R PAA CGVVG K
Sbjct: 118 TENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLK 177
Query: 327 PTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLK 386
PT+GR+ G++ ++ +G A TVEDA ++ AI G P + +P +
Sbjct: 178 PTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDY-TAA 236
Query: 387 SATSISAIKLA------------KYDARY----------GWKVVEVTIPNIEVMRLAHYL 424
I +K+ + G ++VEV++P+ + A+Y+
Sbjct: 237 LGKDIKGLKIGVPKEYFGEGLDPEVKEAVEAAIKKLEDLGAEIVEVSLPHTKYALPAYYI 296
Query: 425 TIGSECSTSLSSY------LQKINCSD----------QGWDARV---------ALSV--Y 457
+E S++L+ Y + + D +G+ V LS Y
Sbjct: 297 IAPAEASSNLARYDGVRYGYRAEDAKDLEEMYEKTRSEGFGEEVKRRIMLGTYVLSAGYY 356
Query: 458 GSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAY---EIKDDALKTGELDYI 514
++ Y+KAQK+R Q F K DVI+ PT TA+ E DD L +
Sbjct: 357 DAY----YLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLA------M 406
Query: 515 YGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 569
Y + + + + N GLPA++VP G+D GLP+GLQ IGK + E TL+++A+A +
Sbjct: 407 YLSDI--FTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE 459
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 256 bits (657), Expect = 3e-79
Identities = 133/444 (29%), Positives = 213/444 (47%), Gaps = 56/444 (12%)
Query: 172 KMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK 231
K++ F+ E LKQA + L G+ IAVKD I TT +K L
Sbjct: 29 KINAFLEVTVEKALKQAKKLDKAILT-----PLAGIPIAVKDNISTKGIVTTCASKILEN 83
Query: 232 VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG 291
P DA + RL+ GA+++GKTNM E G+S +G +NP++ ++ GGSS G
Sbjct: 84 YIP-PYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGG 142
Query: 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILA 351
SAA VAA L P +LG D GGS+R PA+ CGVVGFKPT+GR+ G++ ++ +G A
Sbjct: 143 SAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFA 202
Query: 352 ATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLA-----------KYD 400
TVED ++ I+G + +P + + +K+ +
Sbjct: 203 RTVEDIALLLDVISGHDKRDSTSAKVP-DPEFFEELKKDLKGLKVGVVKEFSEEMDKEVQ 261
Query: 401 ARY----------GWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY--------LQKIN 442
++ G ++VEV+ P+++ +Y+ SE S++L+ Y +++ N
Sbjct: 262 EKFENALEVLEELGAEIVEVSFPHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPN 321
Query: 443 C--------SDQGWDARVALS-VYGSFSSQE------YIKAQKIRNHQMQIHRNVFAKAD 487
+G+ V + G+++ Y+KAQK+R + +F + D
Sbjct: 322 SLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVD 381
Query: 488 VIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPI 547
VIV PT ++I + E+ Y+ + N GLPA++VP G GLPI
Sbjct: 382 VIVSPTAPTLPFKIGEKLDDPLEM-YLSDI----LTVPANLAGLPAISVPCGVKEKGLPI 436
Query: 548 GLQFIGKPWSEPTLMHIAFAMQAL 571
GLQ IGK + + TL+ +++A +
Sbjct: 437 GLQIIGKCFDDKTLLQVSYAFEQA 460
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 229 bits (586), Expect = 1e-68
Identities = 150/465 (32%), Positives = 217/465 (46%), Gaps = 38/465 (8%)
Query: 143 KAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPIS 202
A +G+++ R VA+ +A + +NP +++ F E L +A GEP+
Sbjct: 14 AAVRAGELSARAVAQATLARI-ARANP--QLNAFTAVTAERALAEAARIDAARAAGEPLG 70
Query: 203 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
L GV AVK+ D + T G+K P T DA V RL GA+LVG NM E
Sbjct: 71 PLAGVPFAVKNLFDVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYA 130
Query: 263 AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGV 322
G + N HYG RNP+D ++I GGSS GSAA VAAGL P LG D GS+R+PA+LCG+
Sbjct: 131 YGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCGI 190
Query: 323 VGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP--------SQQPT 374
G KPT+GR+ +G P ++ +G A +V D +VY + GP P +PT
Sbjct: 191 FGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADRPAEPT 250
Query: 375 VSLPKVSFPLLKSATSISAIKLAKY-------DARYGWKVV--------EVTIPNIEVMR 419
L L+ A L Y +AR V EV +P R
Sbjct: 251 APLLDRGAEGLRIA------VLGGYFAQWADPEARAAVDRVAKALGATREVELPEAARAR 304
Query: 420 LAHYLTIGSECSTSLSSYLQKINCSDQGWD--ARVALSVYGSFSSQEYIKAQKIRNHQMQ 477
A ++ SE + +L + Q +D +R L + Y++AQ+ R Q
Sbjct: 305 AAAFIITASEGG---NLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQ 361
Query: 478 IHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVP 537
+F DV++ P T +A I + ++ ++ A L +F+GLP V VP
Sbjct: 362 AVLELFEHVDVLIAPATPCSAPLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVP 421
Query: 538 VGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVF 582
+ GLPIG+Q I PW E + A A++ ++ P VF
Sbjct: 422 LRTP-GGLPIGVQLIAAPWREDLALRAAAALEQQGVAAAPVPTVF 465
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 221 bits (565), Expect = 1e-65
Identities = 153/472 (32%), Positives = 221/472 (46%), Gaps = 36/472 (7%)
Query: 127 SEKQPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILK 186
S + P ++ + + A SG ++ + E +A R ++ P+ F + E L
Sbjct: 2 SHRDPDVASLSLTEAAAALRSGRLSCLELVEALLA--RAAALAPLNA--FTTVDAEGALA 57
Query: 187 QATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLR 246
A + G + +L GV I +KD I+ + PTT GT L P T DA V RL
Sbjct: 58 AARRIDAQRAAGAAL-LLAGVPIVIKDNINTAGMPTTAGTPALLGFVPAT-DAPVVQRLL 115
Query: 247 LCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALG 306
GA+ +GK NMHEL G + N +G RNPYDP++I GGSS G+AA VAA L P LG
Sbjct: 116 DAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLG 175
Query: 307 VDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 366
D GGSVR+PAALCGVVG +PT GR GV+P++ T VG +A +V D ++ A I G
Sbjct: 176 TDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITG 235
Query: 367 ------PLPSQQPTVSLPKVSF--PLLKSATSISAIKLAKYDARYGWKVVEVTIPNI--- 415
P+ + +P F L +++ LAK A G VE+ +P +
Sbjct: 236 DAALPAPVALAGLRLGVPAAPFWDGLDPDVAAVAEAALAKLAAA-GVTFVELDLPGLHEL 294
Query: 416 -----------EVMR-LAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQ 463
E + L YL + S + +I D R L S
Sbjct: 295 NEAVGFPIALYEALADLRAYLR-ENGAGVSFEELVARIASPDVRAIFRDLLDP-PQISED 352
Query: 464 EYIKAQKIRNHQMQ-IHRNVFA--KADVIVVPTTGVTAYEIKDD-ALKTGELDYIYGAAL 519
Y A + ++Q +R FA D I+ PTT +TA I DD + A +
Sbjct: 353 AYRAALDVGRPRLQAWYRQAFARHGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTFARV 412
Query: 520 VRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 571
+R + GLP +++P G GLP+GL+ G S+ L+ I A++ +
Sbjct: 413 IRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLAIGRALERV 464
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 219 bits (560), Expect = 3e-65
Identities = 142/461 (30%), Positives = 207/461 (44%), Gaps = 42/461 (9%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++++ + A SG ++ R VAE +A + ++ ++ F E L A
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADG---GLNAFTAVTAERALADAARIDADLA 57
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
G P+ L GV AVK+ D + T G K + P DA V RL GA+LVG
Sbjct: 58 AGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGAL 117
Query: 257 NMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
NM E G + N HYG RNP+D ++I GGSS GSAA VAAGL P +LG D GS+R+P
Sbjct: 118 NMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVP 177
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQ----- 371
A+LCGV G KPT+GR+ GV P ++ VG A +VED + Y + GP P
Sbjct: 178 ASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTD 237
Query: 372 ---QPTVSL-----------------PKVSFPLLKSATSISAIKLAKYDARYGWKVVEVT 411
+PTV L + + P +A A L V
Sbjct: 238 RPAEPTVPLLPAGISGLRIAVLGGWFQQNADPEALAAVGRVAKALGATT--------IVE 289
Query: 412 IPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWD--ARVALSVYGSFSSQEYIKAQ 469
+P+ E R A ++ SE + +L + Q +D R L + Y +AQ
Sbjct: 290 LPDAERARAAAFVITASEGG---NLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQ 346
Query: 470 KIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFL 529
+ R+ R +F + DV++ P T +A I + + + A L + +F
Sbjct: 347 RFRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFA 406
Query: 530 GLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 570
GLP + P+ LPIG+Q I PW E + A ++
Sbjct: 407 GLPVLAAPL-PRPGRLPIGVQLIAAPWREDLCLRAAAVLER 446
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 194 bits (495), Expect = 5e-56
Identities = 129/393 (32%), Positives = 191/393 (48%), Gaps = 23/393 (5%)
Query: 194 RYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILV 253
R + G + LDG ++++KD D + PT G+ P DA V RLR GA+++
Sbjct: 36 RRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADALIVQRLRNAGAVII 95
Query: 254 GKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 313
GKT+M E G+NPHYG N DP++I GGSSSG+A VA G +A+G D GGSV
Sbjct: 96 GKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSV 155
Query: 314 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQ 371
R+PAAL G+VGFKPT RIPL G PL+ ++ +G LA TV D A + G P+P +
Sbjct: 156 RIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLE 215
Query: 372 QPTVSLPKVSFP----LLKSATSISAI---KLAKYDARYGWKVVEVTIPNIEVMRLAHYL 424
V+ ++ P L ++A LA + G ++ ++ I ++ + RLA
Sbjct: 216 VLPVAGLRIGLPKGYLLADMEPDVAAAFEASLAAL-EKAGARIADLAIDDL-IARLAEAT 273
Query: 425 TIGS----ECSTSLSSYLQKINCSDQGWDARVA--LSVYGSFSSQEYIKAQKIRNHQMQI 478
IGS E S + +L D D RV LS + Y + + R +
Sbjct: 274 RIGSIAGIEASHIHADWLAD---LDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARA 330
Query: 479 HRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPV 538
A D+ +P T + A I + E D + L+R N L ++T+P+
Sbjct: 331 MDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVEN-LLLRNTQVANQFDLCSITLPM 389
Query: 539 GYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 571
A LP GL + S+ L+ A +++ L
Sbjct: 390 P-GMA-LPAGLMLTARNGSDRRLLAAAASVEKL 420
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 190 bits (484), Expect = 4e-54
Identities = 94/243 (38%), Positives = 133/243 (54%), Gaps = 6/243 (2%)
Query: 142 SKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPI 201
+ SG + P VAE+ + A+ ++ + FI+ EE +++A S+ R++ G +
Sbjct: 12 AVLIQSGALDPVQVAEQALDAIASYADQ----AVFISLTEERAMREAEASSARWRAGRSL 67
Query: 202 SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHEL 261
+LDG+ IA KD D + TT G+ L P + DA V L G + +G+TNM E
Sbjct: 68 GLLDGIPIAWKDLFDVAGSVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEF 127
Query: 262 GAGTSGINPHYGVARNPY--DPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAAL 319
G+NPHYG NP D +I GGSSSGSA VAAGL PVA+G D GGSVR+PAA
Sbjct: 128 AFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAF 187
Query: 320 CGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK 379
G+VG+K T GR + GV PL ++ +G L +V DA+ + AA+ G L
Sbjct: 188 NGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAG 247
Query: 380 VSF 382
+
Sbjct: 248 LRL 250
Score = 41.6 bits (98), Expect = 0.001
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 517 AALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 571
+R + GNFL + V++P G AG+P+GL + L+ A A++A+
Sbjct: 394 LKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAV 448
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 178 bits (454), Expect = 1e-49
Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 8/227 (3%)
Query: 143 KAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPIS 202
AY G+++P + + + + +P ++ F + E L A S R+++GEP
Sbjct: 14 AAYRRGELSPVEATQAVLDRI-DRRDP--AVNAFCLVDAEGALAAARASEERWRRGEPCG 70
Query: 203 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
+LDGV +++KD +PT G++ + P DA V RLR GA+L+GKT E G
Sbjct: 71 LLDGVPVSIKDIFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFG 130
Query: 263 AGTSGI--NPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALC 320
G+ +P YG+ RNP+D GGSS G+AA VA G+ P+++G DGGGSVR+PA+ C
Sbjct: 131 --WKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPASFC 188
Query: 321 GVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGP 367
G GFKPTFGR+PL P T+ VG + TV DA ++ I P
Sbjct: 189 GTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARP 234
Score = 52.3 bits (126), Expect = 4e-07
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 460 FSSQEYIKAQKIRNHQMQIHRNVF-AKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAA 518
+S+ +Y+ A +R + F + D+++ PT + A+E D G+
Sbjct: 346 YSASDYLDATAVR-AALGARMGAFHERYDLLLTPTLPIPAFEAGHDVPP--------GSG 396
Query: 519 LVR------YQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALC 572
L + N PA +VP G+ AGLP+GLQ +G S+ ++ +A A +
Sbjct: 397 LTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQAL 456
Query: 573 ISEFRKPKV 581
P
Sbjct: 457 PWPHGAPAA 465
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 178 bits (452), Expect = 1e-49
Identities = 127/466 (27%), Positives = 201/466 (43%), Gaps = 75/466 (16%)
Query: 146 SSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLD 205
+ G++T M+ E ++ + + + + + +A + R GE + +L
Sbjct: 19 ADGELTAPMLLEVYLQRIERLDS---HLRAYRVVLFDRARAEAEAAQQRLDAGERLPLL- 74
Query: 206 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGT 265
GV IA+KD++D + TT G+ T DA V RLR GA+++GKTN+ EL
Sbjct: 75 GVPIAIKDDVDVAGEVTTYGSA--GHGPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMP 132
Query: 266 SGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGF 325
+ +G RNP+DP++ GGSS GSAA VAAGL PVALG DGGGS+R+P+ CG+ G
Sbjct: 133 FTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGL 192
Query: 326 KPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAIN-----------------GPL 368
KP RI L + + G +A +V DA ++ A G L
Sbjct: 193 KPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEFVAAAAREPGRL 252
Query: 369 P---SQQPTVSLP-KVSFPLLKSATSISAI------KLAKYDARYGWKVVEVTIPNI--- 415
S + LP + L + A+ + D Y +P
Sbjct: 253 RIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVVRDPDYPAATYANYLPRFFRG 312
Query: 416 ---EVMRLAHY--LTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQK 470
+ AH L + L S+ D R+A + + E + + +
Sbjct: 313 ISDDADAQAHPDRLEARTRAIARLGSFFS---------DRRMA-----ALRAAEVVLSAR 358
Query: 471 IRNHQMQIHRNVFAKADVIVVPTTG-----VTAYEIKDDALKTGELDYIYGAA-LVRYQI 524
I +++F DV+V P T + AY+ + G + + V Y
Sbjct: 359 I--------QSIFDDVDVVVTPGTATGPSRIGAYQ------RRGAVSTLLLVVQRVPYFQ 404
Query: 525 AGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 570
N G PA VP +D GLP+ +Q +G+P+ E TL+ +A +++
Sbjct: 405 VWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIES 450
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 173 bits (441), Expect = 5e-48
Identities = 130/430 (30%), Positives = 196/430 (45%), Gaps = 57/430 (13%)
Query: 176 FINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPC 235
F + + + A + G S L G+ ++VKD D + T G++ L P
Sbjct: 44 FTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVAGQVTRAGSRVLADAPPA 103
Query: 236 TGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY----DPSKITGGSSSG 291
DA V RLR GA+L+G+TNM E G+NPHYG RNP+ +I GGSSSG
Sbjct: 104 AADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSG 163
Query: 292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILA 351
+A VA G+ ALG D GGS+R+PAALCG+ GFKPT R+PL G +PL+ T+ +G LA
Sbjct: 164 AAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLA 223
Query: 352 ATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLA-------------- 397
+V +V A + + + V +A + ++LA
Sbjct: 224 RSVACCALVDAVL-----AGEEPVVP---------AARPLEGLRLAVPTTVVLDGLDATV 269
Query: 398 --------KYDARYGWKVVEVTIPNIEVMRLAHYLTIGSECS-TSLSSYL---QKINCSD 445
K + G + E+ P E+ LA I ++ ++ SY +
Sbjct: 270 AAAFERALKRLSAAGAIIEEIAFP--ELAELA---EINAKGGFSAAESYAWHRPLLARHR 324
Query: 446 QGWDARVALSV-YG-SFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKD 503
+D RVA + G S+ +YI R + A+ D +V+PT + I D
Sbjct: 325 DQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIAD 384
Query: 504 DALKTGELDYIYGAALV-RYQIAGNFLGLPAVTVPVGYDTAG-LPIGLQFIGKPWSEPTL 561
L+ + + AL+ R NFL A+++P G P+GL G P + L
Sbjct: 385 --LEADDAAFFRTNALLLRNPSLINFLDGCALSLPCH--APGEAPVGLMLAGAPGRDDRL 440
Query: 562 MHIAFAMQAL 571
+ IA A++A+
Sbjct: 441 LAIALAVEAV 450
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 172 bits (438), Expect = 3e-47
Identities = 132/457 (28%), Positives = 190/457 (41%), Gaps = 72/457 (15%)
Query: 182 EDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCS-PYPTTGGTKWLHKVRPCTGDAC 240
D A K G+ L G+ + +KD ID + P PTT G+ L RP T DA
Sbjct: 51 PDAEADAAALDAERKAGKVRGPLHGIPVLLKDNIDAADPMPTTAGSLALAGNRP-TRDAF 109
Query: 241 CVMRLRLCGAILVGKTNMHEL-----GAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295
V RLR GA+++GK N+ E +SG + G+ RNPY + GSSSGS A
Sbjct: 110 LVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAA 169
Query: 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVE 355
VAAGL VA+G + GS+ PAA+ G+VG KPT G + G++P++ + G + TV
Sbjct: 170 VAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVA 229
Query: 356 DALVVYAAINGPLPSQQPTVSLPKVSFPLLK--SATSISAIKLA----------KYDA-- 401
DA V AI G P+ T S P + + A ++ +L + DA
Sbjct: 230 DAAAVLTAIAGGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYLGYHPEVDAQF 289
Query: 402 --------RYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQ------KINCSDQG 447
G V++V + A + + E L++YL+ +
Sbjct: 290 ERALAELKAAGAVVIDVVDLDDGDWGEAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADL 349
Query: 448 WDARVALSV--YGSFSSQEYIKAQKIRNHQMQIHRNVFAKA------------------D 487
A F + + +AQ + + A A D
Sbjct: 350 IAFNRAQHAREMPYFGQELFEQAQAAPGLDDPAYLDALADAKRLAGPEGIDAALKEHRLD 409
Query: 488 VIVVPTTGVTAYEIKDDALKTGE-LDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLP 546
+V PTTG A+ I D + A V G P +TVP+G GLP
Sbjct: 410 ALVAPTTG-PAWLI--DLINGDSFGGSSSTPAAVA--------GYPHLTVPMGQ-VQGLP 457
Query: 547 IGLQFIGKPWSEPTLMHIAFAM-QALCISEFRKPKVF 582
+GL FIG WSE L+ + +A QA + R+ F
Sbjct: 458 VGLSFIGAAWSEARLLELGYAYEQA---THARREPRF 491
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 166 bits (422), Expect = 6e-46
Identities = 113/381 (29%), Positives = 160/381 (41%), Gaps = 38/381 (9%)
Query: 204 LDGVLIAVKDEIDCSPYPTTGGT-KWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
L G+ AVKD D + Y T G WL + T A V +L GA VGKT EL
Sbjct: 26 LAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDELA 85
Query: 263 AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGV 322
+G N HYG NP P ++ GGSSSGSAA VA GL ALG D GGSVR PA+ CG+
Sbjct: 86 FSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGL 145
Query: 323 VGFKPTFGRIPLSGVLPLNWTVGMVGILA------ATVEDALVVYAAINGPLPSQQPTVS 376
G +PT GRI L GV+PL + VG A V + L+ A PL +
Sbjct: 146 YGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLT---QRLL 202
Query: 377 LPKVSFPLLKSATSISAIKLAKYDARYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSS 436
+P F LL A + + ++P + + Y
Sbjct: 203 IPVDLFALLDPAVRAALEAALARLRPHLGPAKPASVPPLSLDEW--YEAF---------R 251
Query: 437 YLQK--INCSDQGWDARVALSV---------YGSFSSQEYIKAQKIRNHQMQIHRN-VFA 484
LQ + W + + G+ + + ++A + R +
Sbjct: 252 VLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVEAARARRAAFARELAALLG 311
Query: 485 KADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAG 544
V+++PT A ++ + L+ AL IAG GLP +++P+ G
Sbjct: 312 PDAVLLLPTVPGAA-PLRGAPFE--ALEAYRERALRLLCIAG-LAGLPQISLPLA-SVDG 366
Query: 545 LPIGLQFIGKPWSEPTLMHIA 565
P GL IG S+ +L+ +A
Sbjct: 367 APFGLSLIGPRGSDRSLLALA 387
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 167 bits (425), Expect = 5e-45
Identities = 134/426 (31%), Positives = 180/426 (42%), Gaps = 62/426 (14%)
Query: 181 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTG--- 237
EED+L QA R + E + L GV AVKD ID + PTT C
Sbjct: 10 EEDLLAQAAALDARDARPERLP-LYGVPFAVKDNIDVAGLPTTAA---------CPAFAY 59
Query: 238 ----DACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSA 293
DA V LR GAI+VGKTN+ + G G YG RN +DP+ I+GGSSSGSA
Sbjct: 60 TPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSA 119
Query: 294 AVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAAT 353
VA GL P ALG D GS R+PAAL +VG KPT G + +GV+P ++ V I A T
Sbjct: 120 VAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALT 179
Query: 354 VEDALVVYAAINGPLPS-----QQPTVSL------PKVSFPLLKSATSIS-AIKLAKYDA 401
V DA V P P +L P+V P + A + A
Sbjct: 180 VADAEQVLRIAAAPDARDPYSRPLPAAALRRFPPPPRVGVPRAAQLEFFGDSQAEAAFAA 239
Query: 402 ------RYGWKVVEVTI-PNIEVMRLAH--------YLTIGSECSTSLSSYLQKINCSDQ 446
G +VVE+ P +E L + Y +G + +
Sbjct: 240 AVERLEALGVEVVEIDFAPFLETAALLYEGPWVAERYAAVGEFVEAQPDALDPVV----- 294
Query: 447 GWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTG--VTAYEIKDD 504
R ++ FS+ + AQ + + A DV++VPT T E+ D
Sbjct: 295 ----RGIITSATRFSAADAFAAQYRLAALRRKAEALLAGVDVLLVPTAPTHPTIEEVLAD 350
Query: 505 ALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHI 564
+ + L Y N L L AV VP G+ + GLP G+ IG + + L +
Sbjct: 351 PVGL-------NSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASL 403
Query: 565 AFAMQA 570
+QA
Sbjct: 404 GRRLQA 409
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 163 bits (414), Expect = 4e-44
Identities = 132/465 (28%), Positives = 200/465 (43%), Gaps = 45/465 (9%)
Query: 135 RWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLR 194
R + + + A S D++ R AE +A + ++ NP ++ +++ E+ L QA
Sbjct: 7 RLSAAELAAAVRSRDVSAREAAEAALARL-DAVNP--AINAVVDHRPEEALAQADAVDAA 63
Query: 195 YKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVG 254
+G+ L GV + VK +D + + TT G + L K D+ V LR GA+++G
Sbjct: 64 RARGDDPGPLAGVPVTVKVNVDQAGFATTNGVR-LQKDLIAPADSPVVDNLRKAGAVIIG 122
Query: 255 KTNMHELG--AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
+TN T NP +G NP+DPS GGSS G+AA VAAG+ +A G D GGS
Sbjct: 123 RTNTPAFSYRWFTD--NPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGS 180
Query: 313 VRMPAALCGVVGFKPTFGRIPL-------SGVLPLNWTVGMVGILAATVEDALVVYAAIN 365
+R PA CGV G +PT GR+P + +V G LA TV D + AA+
Sbjct: 181 IRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQ--GPLARTVADLRLALAAMA 238
Query: 366 GPLPSQQPTVSLPKVSFPLLKSAT---------SISAIKLAKYDA-----RYGWKVVEVT 411
P P V P P K ++ A DA GW V EV
Sbjct: 239 APDPRDPWWVPAPLEGPPRPKRVALCVRPDGLDVDPEVEAALRDAARRLEDAGWTVEEVD 298
Query: 412 -IPNI-EVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVY----GSFSSQEY 465
P + E L L +G L++ + D G A AL Y
Sbjct: 299 DTPPLREAAELQERLWLGDGYEALLAAAEAE---GDPG--ALAALRGQRAKARPLDLAGY 353
Query: 466 IKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIA 525
+ A R + + F ++++P + + D ++ A L QIA
Sbjct: 354 MNALARRATLTRQWQLFFEDYPLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQL--PQIA 411
Query: 526 GNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 570
F+GLP ++VP G G+P+G+Q + + E + A++A
Sbjct: 412 LPFMGLPGLSVPTGL-VGGVPVGVQLVAGRFREDLCLAAGEAIEA 455
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 165 bits (419), Expect = 6e-44
Identities = 93/241 (38%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 135 RWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFIN-YNEEDILKQATESTL 193
T+ AY +G +TPR V A + +P + +I+ E D+L QA
Sbjct: 6 DLTLASLRAAYRAGTLTPRAVVAALYARIAAVDDPEV----WIHLRPEADLLAQAAALEA 61
Query: 194 RYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTG-------DACCVMRLR 246
R P L GV AVKD ID + PTT C DA V RLR
Sbjct: 62 RDPAALP---LYGVPFAVKDNIDVAGLPTTAA---------CPAFAYTPERDATVVARLR 109
Query: 247 LCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALG 306
GAI++GKTN+ + G G YG RN +DP ++GGSSSGSA VA GL ALG
Sbjct: 110 AAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALG 169
Query: 307 VDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 366
D GS R+PAA +VG KPT G + GV+P T+ V + A TV+DA V A + G
Sbjct: 170 TDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAG 229
Query: 367 P 367
Sbjct: 230 F 230
Score = 42.5 bits (101), Expect = 6e-04
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 482 VFAKADVIVVPTTG--VTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVG 539
V A D ++VPT T E+ D + + L Y N L L A+ VP G
Sbjct: 363 VLAGIDALLVPTAPTHPTIAEVAADPIG-------LNSRLGTYTNFVNLLDLCALAVPAG 415
Query: 540 YDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 570
+ GLP G+ I +++ L +A +QA
Sbjct: 416 FRADGLPFGVTLIAPAFADQALADLAARLQA 446
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 158 bits (401), Expect = 4e-42
Identities = 128/431 (29%), Positives = 187/431 (43%), Gaps = 83/431 (19%)
Query: 204 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHEL-- 261
L G +A+KD + + P G+ L P DA V RL GA +VGK +L
Sbjct: 88 LAGKTVALKDNVAVAGVPMMNGSSTLEGFVPSF-DATVVTRLLDAGATIVGKATCEDLCF 146
Query: 262 --GAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAAL 319
G+ TS P NP DP GGSSSGSAA+VAAG +A+G D GGS+R+P+A
Sbjct: 147 SGGSHTSDPGP----VHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAW 202
Query: 320 CGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGP--LPSQQPTVSL 377
CG+ G KPT G +P +G P+ T+ +G + ATV D ++ I G L +QP
Sbjct: 203 CGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPA--Q 260
Query: 378 PKV---------------------------SFPLLKSATSISAIKLAKYDARYGWKVVEV 410
P V S P + A +A +L G V EV
Sbjct: 261 PPVDDYTAALDRGVKGLKIGILREGFGLPNSEPEVDEAVRAAAKRLED----LGATVEEV 316
Query: 411 TIPNIEVMRLAHYLTIGSECSTSL----SSY---------LQKINCSDQGWDARV-ALSV 456
+IP + + LA + I +E +T+ + Y ++ GW R LS
Sbjct: 317 SIP-LHRLALAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLDAFGAGWRERADDLSE 375
Query: 457 ----------YG--SFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDD 504
YG + + Y KA+ + + K D++V+PTT + A +
Sbjct: 376 TVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAP 435
Query: 505 ALKTGELDYIYGAALVRYQIAGN-----FLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEP 559
E Y+ A ++ N G PA++VP G GLP+GL +G+ + E
Sbjct: 436 DASREE--YVSRA----LEMIANTAPFDVTGHPAMSVPCGL-VDGLPVGLMLVGRHFDEA 488
Query: 560 TLMHIAFAMQA 570
T++ A A +A
Sbjct: 489 TILRAAAAFEA 499
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 155 bits (394), Expect = 2e-41
Identities = 75/190 (39%), Positives = 107/190 (56%), Gaps = 7/190 (3%)
Query: 179 YNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGD 238
++ E A ST R+ KGEP+ LDGV + +K+ I P GT P D
Sbjct: 47 FDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIATRGVPVPLGTAATDLP-PAAAD 105
Query: 239 ACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAA 298
A RLR GA+++ KT M + G +SG++ +G+ RNP+D + GGSS+G+ A AA
Sbjct: 106 APPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAA 165
Query: 299 GLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMV-GILAATVEDA 357
G P+ LG D GGSVR+PA CG+VG KP+ GRIP+ P G G + TV+DA
Sbjct: 166 GYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPID---P--PYTGRCAGPMTRTVDDA 220
Query: 358 LVVYAAINGP 367
++ + ++ P
Sbjct: 221 ALLMSVLSRP 230
Score = 38.8 bits (91), Expect = 0.006
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 532 PAVTVPVGYDTAGLPIGLQFIGK 554
PA ++ G+ GLPIGLQ +G
Sbjct: 412 PAASINCGFTRDGLPIGLQIVGP 434
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 152 bits (385), Expect = 4e-40
Identities = 95/235 (40%), Positives = 128/235 (54%), Gaps = 10/235 (4%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
+ D + +SG +T + R + + E+S P ++ F E L +A E+ R
Sbjct: 19 GLTDQAYQLASGAVTSVELVRRSLRRI-EASQP--TLNAFRVVRAEAALAEAAEADRRRA 75
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
G+ + +L GV IAVKD++D + PT GT +V P T D+ V RLR GA++VGKT
Sbjct: 76 AGDRLPLL-GVPIAVKDDVDVAGVPTAFGTA--GEVPPATADSEVVRRLRAAGAVIVGKT 132
Query: 257 NMHELGAG--TSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVR 314
N ELG TSG P +G RNP+ GGSS GSAA VAAGL A+G DG GSVR
Sbjct: 133 NTCELGQWPFTSG--PAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVR 190
Query: 315 MPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP 369
+PAA +VG KP GRI + + + G LA TV DA ++ A +G P
Sbjct: 191 IPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHP 245
Score = 57.8 bits (140), Expect = 8e-09
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 472 RNHQMQIHRNV---FAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAG-- 526
R + R V F DV++ PTT + G D + G A R IA
Sbjct: 365 RAAEAAAQRRVGSIFDIVDVVLAPTTAQPPPRV-------GAFDRLGGWATDRAMIAACP 417
Query: 527 -----NFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 570
N LG P++ VP G+ + GLPIG Q +G SEP L+ +A ++A
Sbjct: 418 YTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLEA 466
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 152 bits (385), Expect = 5e-40
Identities = 120/416 (28%), Positives = 182/416 (43%), Gaps = 54/416 (12%)
Query: 188 ATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRL 247
A + +GE L G+ + VK+ + + PTT G L P DA V RL+
Sbjct: 61 ARAADAARARGE-RGPLLGIPVTVKESFNVAGLPTTWGFPDLRDYVP-AEDAVAVARLKA 118
Query: 248 CGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGV 307
GA+++GKTN+ N YG NP+D ++ GGSS GSAA +AAG +++G
Sbjct: 119 AGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGS 178
Query: 308 DGGGSVRMPAALCGVVGFKPTFGRIPLSG-------VLPLNWTVGMVGILAATVEDALVV 360
D GGS+R+PA CGV KPT G +PL G LP + + G +A + D ++
Sbjct: 179 DIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALL 238
Query: 361 YAAINGPLPSQQPT---VSLPKV--------------SFPLLKSATSISAI--KLAKYDA 401
+ GP P ++LP PLL + ++ A +LA A
Sbjct: 239 LDVMAGPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEHPLLPTDAAVRAAIERLAAALA 298
Query: 402 RYGWKVVE--VTIPNIEV-----MRL------AHYLTIGSECSTSLSSYLQKINCSDQGW 448
G +VV +P++ MRL A + + + ++ L D+
Sbjct: 299 DAGARVVRHSPLLPDLAESARLYMRLLFAASAARFPPDAYADAQARAAGLSA---DDRSL 355
Query: 449 DARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAY---EIKDDA 505
A L S ++++ A R R FA+ DV++ P T A+ D
Sbjct: 356 AA-ERLRGAV-LSHRDWLFADAAREELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPL 413
Query: 506 LKTGELD---YIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSE 558
+ ++D Y Y LV +A GLPA +P+G GLP+G+Q +G P E
Sbjct: 414 ERRIDIDGVSYPYWDQLVWAGLAT-LPGLPATAIPIGLSATGLPVGVQIVG-PALE 467
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 143 bits (362), Expect = 6e-37
Identities = 123/449 (27%), Positives = 184/449 (40%), Gaps = 91/449 (20%)
Query: 181 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDAC 240
+ +L +A E +GE L G+ A KD TT G+ P DA
Sbjct: 55 RDALLAEAAEKDAALARGEYRGWLHGMPQAPKDLAPTKGIRTTLGSPIFADQVP-QEDAI 113
Query: 241 CVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGL 300
V R+R GAI +GKTN E G G+ NP YG RNPYDPS+ GGSS G+AA +A +
Sbjct: 114 VVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRM 173
Query: 301 CPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMV--------GILAA 352
PVA G D GS+R PAA V +G P G +P + G V G +
Sbjct: 174 LPVADGSDMMGSLRNPAAFNNV------YGFRPSQGRVP-HGPGGDVFVQQLGTEGPMGR 226
Query: 353 TVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYD---ARYGW---- 405
TVED ++ A G P PL + + + D R W
Sbjct: 227 TVEDVALLLAVQAGYDPRD-----------PLSLAEDPARFAQPLEADLRGKRIAWLGDW 275
Query: 406 ---KVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY-LQKINCSDQGWDARVAL---SVYG 458
+E + + LA +G + +L ++ +++ W A + L V G
Sbjct: 276 GGYLPMEAGVLELCEAALATLRELGCDVEAALPAFPPERL------WRAWLTLRHFLVGG 329
Query: 459 S---------------------------FSSQEYIKAQKIRNHQMQIHRNVFAKADVIVV 491
S ++ + +A IR+ Q +F + D + +
Sbjct: 330 SLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERYDFLAL 389
Query: 492 PTTGVTAYEIKDDALKTGELDY---IYGAALVRYQ------IAGNFLGLPAVTVPVGYDT 542
PT V ++ E + I G A+ Y + GLPA++VPVG++
Sbjct: 390 PTAQVFPFDA--------EWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNA 441
Query: 543 AGLPIGLQFIGKPWSEPTLMHIAFAMQAL 571
AGLP+G+Q IG P ++ ++ +A A +
Sbjct: 442 AGLPMGMQIIGPPRADLAVLQLAHAYEQA 470
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 137 bits (347), Expect = 9e-35
Identities = 117/414 (28%), Positives = 167/414 (40%), Gaps = 65/414 (15%)
Query: 200 PISVLDGVLIAVKDEIDCSP-YPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNM 258
S L G+ + VKD + + PT+ GT L DA V +L+ GA ++GK NM
Sbjct: 133 KKSNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIA-DQDATIVKQLKEEGAFVLGKANM 191
Query: 259 HELG-----AGTSGINPHYGVARNPYDPSKI-TGGSSSGSAAVVAAGLCPVALGVDGGGS 312
E SG + G NPY P K T GSSSGSA VVAA P+A+G + GS
Sbjct: 192 SEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADFAPLAVGTETTGS 251
Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 372
+ PAA VVG +P+ G + +G++PL T+ G +A TV+DA ++ A+ G +
Sbjct: 252 IVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMIG---YDE 308
Query: 373 PTVSLPKVSFPLLKSATSISAIKLAKYDARYGWKVVEVTIPNIEVMRLAHYLTIGSECST 432
V KV K I K D G K+ + + + +
Sbjct: 309 KDVMTEKV-----KDKERIDYTKDLSIDGLKGKKIGLLFSVDQQD-------ENRKAVAE 356
Query: 433 SLSSYLQK--------INCSDQGWDARVALSVYGSFSSQEYIKAQK----------IRNH 474
+ LQ I ++ G D L + +Y QK I +
Sbjct: 357 KIRKDLQDAGAILTDYIQLNNGGVDNLQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFN 416
Query: 475 QMQIHRNVFAKADVI---------------VVPTTGVTAYEIKDDALKTGELDYIYGAAL 519
+ R + +I VV T+ A + D L LD AL
Sbjct: 417 KKDSKRRIKYGQTLIEASEKSAITKDEFEKVVQTSQENAKKELDRYLVEKGLD-----AL 471
Query: 520 VRYQIAGNFL----GLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 569
V L G P + VP GYD G P+G F+GK + E L +I +A +
Sbjct: 472 VMINNEEVLLSAVAGYPELAVPAGYDNNGEPVGAVFVGKQFGEKELFNIGYAYE 525
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 118 bits (297), Expect = 9e-29
Identities = 63/149 (42%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
Query: 204 LDGVLIAVKDEIDCSPYPTT-GGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
L G+ AVKD D Y T G W T A V+ + GA VGKT M E+
Sbjct: 27 LHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIMDEMA 86
Query: 263 AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGV 322
+G N HYG NP P ++ GGSSSGSA V A L +LG D GGSVR+PA+ CG+
Sbjct: 87 YSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGI 146
Query: 323 VGFKPTFGRIPLSGVLPLNWTVGMVGILA 351
GF+P+ G + GV+P+ + VG A
Sbjct: 147 FGFRPSHGAVSTVGVIPMAQSFDTVGWFA 175
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 118 bits (299), Expect = 1e-28
Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 19/222 (8%)
Query: 147 SGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDG 206
+G ++ V E IA E+ NP + + + + +A G G
Sbjct: 26 AGRVSAAEVVEAAIARA-EAVNPALNALAYAAF--DRARDRAARP------GSQGGFFSG 76
Query: 207 VLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTS 266
V +KD +D + PT G+ RP D+ + G I +GKT + E G S
Sbjct: 77 VPTFIKDNVDVAGLPTMHGSDAWTP-RPAKADSDFARQFLATGLISLGKTQLPEFGFSAS 135
Query: 267 GINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFK 326
+P G RNP++ G SS GSAA+VAAG+ P+A DGGGS+R+PAA CG+VG K
Sbjct: 136 TEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLK 195
Query: 327 PTFGRIPLSG---VLPLNWTVGMV--GILAATVEDALVVYAA 363
P+ GR+PL LP+N +V G+L TV D Y
Sbjct: 196 PSRGRLPLDPELRRLPVN----IVANGVLTRTVRDTAAFYRE 233
Score = 44.2 bits (105), Expect = 1e-04
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 477 QIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDY-IYGAALVRYQI---AGNFLGLP 532
+++ F DV++ PT T EI D+ L+ Y N G P
Sbjct: 366 RVYARFFGTYDVVLTPTLAHTTPEI---GYLDPTQDFDTVLDRLISYVAFTPLQNATGEP 422
Query: 533 AVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 570
A+++P+G + GLP+G+ F E TL+ +A+ ++
Sbjct: 423 AISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEE 460
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 118 bits (298), Expect = 1e-28
Identities = 106/397 (26%), Positives = 178/397 (44%), Gaps = 58/397 (14%)
Query: 196 KKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGK 255
+K L + +KD S PT +K L +P + +A V +L GA V K
Sbjct: 29 EKNNKDGPLANCVFTIKDNFATSEGPTHASSKSLENFKP-SYNATVVQKLINAGAKPVAK 87
Query: 256 TNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRM 315
+ ELG G +G+ +G+ +NP D SK+ GGSSSGSAA + A+G D G SVR+
Sbjct: 88 VHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKNI-SFAIGSDTGDSVRL 146
Query: 316 PAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDAL----VVYAAINGPLPSQ 371
PA+ G VGFKP++G I G+ ++ V V DA+ V++ L S
Sbjct: 147 PASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSV 206
Query: 372 QPTVSLPKVS------------FPLLKSATSISAIKLAKYDARYGWKVVEVTIPNIEVMR 419
V + V F L+ + KL +V ++ I + ++++
Sbjct: 207 D--VKINNVKKTKPKKVAYLDCFKELEEYVAKKYKKLINILKSENIEVEKIKI-DEKLLK 263
Query: 420 L--AHYLTIG-SECSTSLS-----SYLQK----------INCSDQGWDARVALS-VYGSF 460
Y I SE S++L+ ++ + IN +G+ V + GS+
Sbjct: 264 AIKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTRSEGFGKMVQKRLILGSY 323
Query: 461 ----SSQE--YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKT-GELDY 513
+QE ++KA+K+R + ++ K D+++ P A +I ++ K+ +DY
Sbjct: 324 FLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYMDY 383
Query: 514 IYGAALVRYQIAGNFLGLPAVTVPVG-YDTAGLPIGL 549
I + N +G P++++P+G Y+ LP L
Sbjct: 384 ILTIS--------NLVGNPSLSIPLGKYN--NLPFNL 410
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 117 bits (294), Expect = 1e-27
Identities = 108/394 (27%), Positives = 180/394 (45%), Gaps = 28/394 (7%)
Query: 202 SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHEL 261
S L G+ + +KD I PT+ GT L K DA V L+ GA+++GKTNM E
Sbjct: 228 SALYGMPVLLKDNIGTKELPTSAGTVAL-KDWVIGKDATIVENLKANGALILGKTNMSEW 286
Query: 262 GAGT-----SGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
AG +G + G ++NPY + GSSSGSA + +A+G + GS+ P
Sbjct: 287 AAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAIGTETNGSIITP 346
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDA-LVVYAAINGPLPSQQPTV 375
A+ VG+KP+ G + G++PL+ G L TV DA L A N T
Sbjct: 347 ASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTSNPPLSTD 406
Query: 376 SLPKVSFPLL---KSATSISAIKLAKYD-ARYGWKVVE-VTIPNIEVMRLAHYLTIGSEC 430
+L LL +S + IK K D + G ++E + + E + + ++
Sbjct: 407 ALKGKRIGLLADGESNEETAVIKKIKLDLQKAGATIIEGIAVGEFEQKDTDYASLLNADF 466
Query: 431 STSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIV 490
L+ +LQ + ++ + + + +Y +++ +++ Q I + +AD +
Sbjct: 467 KHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQSELVKSQQSTITKQ---QADNLA 523
Query: 491 VPTTGVTAYEIKDDALKTGELDYIY-----GAALVRYQIAGNFLGLPAVTVPVGYDT-AG 544
+ E+ D L+ +LD + G+ + IAGN P +T+P GYD +
Sbjct: 524 SNLIQSSQNEL-DSVLQKDKLDAVVTIGMGGSVMFLAPIAGN----PELTIPAGYDEESN 578
Query: 545 LPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRK 578
PI L FI S+ L+++ +A + S+ RK
Sbjct: 579 QPISLTFITARNSDKILLNMGYAYEQ--QSKNRK 610
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 115 bits (290), Expect = 2e-27
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 13/244 (5%)
Query: 134 HRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDI-LKQATEST 192
T+ D A G +T + + ++ + + K++ + N + I + +A +
Sbjct: 11 KELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPDAIFIAEALDHE 70
Query: 193 LRYKKGEPISVLDGVLIAVKDEIDCSPY-PTTGGTKWLHKVRPCTGDACCVMRLRLCGAI 251
+ K L G+ + +KD I+ + T+ GT L + + DA V +LR GA+
Sbjct: 71 RKIKG--VRGPLHGIPVLLKDNIETNDSMHTSAGTIALEQHIS-SEDAFLVTKLREAGAV 127
Query: 252 LVGKTNMHELGAGTS-----GINPHYGVARNPYDPSKIT---GGSSSGSAAVVAAGLCPV 303
++GK NM EL S G + G NPY + GGSS+GSA VAA V
Sbjct: 128 ILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVV 187
Query: 304 ALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAA 363
++G + GS+ PA VVG KPT G I G++P ++ G A TV DA ++ +
Sbjct: 188 SVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGS 247
Query: 364 INGP 367
+ G
Sbjct: 248 LTGV 251
Score = 52.9 bits (127), Expect = 3e-07
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 503 DDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLM 562
D AL+ LD I + + I G P++ +P GY G P G+ +SE TL+
Sbjct: 414 DFALEKYNLDAILFPSYIGSTICAK-AGYPSIAIPAGYMEGGRPFGITLASTAFSEGTLI 472
Query: 563 HIAFAM-QALCISEFRKP 579
+A+A QA ++ RK
Sbjct: 473 KLAYAFEQA---TKHRKI 487
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 99.1 bits (247), Expect = 5e-22
Identities = 116/485 (23%), Positives = 195/485 (40%), Gaps = 78/485 (16%)
Query: 144 AYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISV 203
A G +TP + + I ++ NP + Y E L++A + R G+P +
Sbjct: 12 AVQQGQVTPLELVTQAIYKAKKL-NPTLNAIVSERYEEA--LEEAKQ---RDFSGKPFA- 64
Query: 204 LDGVLIAVKD-EIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELG 262
GV I +KD + +T G++ L K T V RL G I++G++N E G
Sbjct: 65 --GVPIFLKDLGQELKGQLSTSGSR-LFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFG 121
Query: 263 AGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGV 322
+ +G P+D S+ GGSS G+AA+V++G+ +A DGGGS+R+PA+ G+
Sbjct: 122 FKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGL 181
Query: 323 VGFKPTFGRIPLSGVLPLNWTVGMVGI-LAATVEDA--LVVY---AAINGPLPSQQPTVS 376
+G KP+ GRIP+ W V L +V D L+ Y + P P T+S
Sbjct: 182 IGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFP--LATLS 239
Query: 377 LPKVSFPLLK-------------SATSISAI----KLAKYDARYGWKVVEVT---IPNIE 416
+ L + S S+ A + + G +VVE+ + E
Sbjct: 240 KESLFQSLQRPLKIAFYQRSPDGSPVSLDAAKALKQAVTFLREQGHEVVELEEFPLDMTE 299
Query: 417 VMRLAHYLTIGS--------ECSTSLSSYLQKINCSDQGWDARVALSVYGS---FSSQEY 465
VMR Y + S + +L + K + W ++Y S ++ Y
Sbjct: 300 VMR--SYYIMNSVETAAMFDDIEDALGRPMTKDDMETMTW------AIYQSGQDIPAKRY 351
Query: 466 IKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTA---------YEIKDDALKTGE------ 510
+ + + + D+++ TT A ++ + +
Sbjct: 352 SQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQ 411
Query: 511 LDYIY-----GAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIA 565
+ + A+ Y N G PA+++P GLP+G+Q I E L+ IA
Sbjct: 412 QNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLLLGIA 471
Query: 566 FAMQA 570
+A
Sbjct: 472 EQFEA 476
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 83.7 bits (207), Expect = 8e-17
Identities = 72/214 (33%), Positives = 97/214 (45%), Gaps = 21/214 (9%)
Query: 183 DILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGT---KWLHKVRPCTGDA 239
D LK+A S R +GE + LDG+ KD G+ K L R DA
Sbjct: 55 DALKEAEASDARRARGETLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQR----DA 110
Query: 240 CCVMRLRLCGAILVGKTNMHELGAGTSGINP-HYGVARNPYDPSKITG----GSSSGSAA 294
+ RLR GAI +GKTNM + G G+ YG A +PY+ + +T GSS+G+
Sbjct: 111 FTIERLRAAGAICLGKTNMPPMANG--GMQRGVYGRAESPYNAAYLTAPFASGSSNGAGT 168
Query: 295 VVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATV 354
AA L + S R PA+ G+ + P+ G I + G PL T+ +V A T+
Sbjct: 169 ATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTM 228
Query: 355 EDALVVYAAI-------NGPLPSQQPTVSLPKVS 381
D L V I G L QP V +PK S
Sbjct: 229 ADLLEVLDVIVADDPDTRGDLWRLQPWVPIPKAS 262
Score = 40.5 bits (95), Expect = 0.002
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 529 LGLPAVTVPVGY--DTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 570
LG+P VTVP+G D G+P+GL F G+ + + L+ A A +A
Sbjct: 510 LGVPTVTVPMGVMADI-GMPVGLTFAGRAYDDNALLRFAAAFEA 552
>gnl|CDD|147282 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. The
HRD4 gene was identical to NPL4, a gene previously
implicated in nuclear transport. Using a diverse set of
substrates and direct ubiquitination assays, analysis
revealed that HRD4/NPL4 is required for a poorly
characterized step in ER-associated degradation after
ubiquitination of target proteins but before their
recognition by the 26S proteasome. This region of the
protein contains possibly two zinc binding motifs
(Bateman A pers. obs.). Npl4p physically associates with
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex.
The Cdc48-Ufd1-Npl4 complex functions in the recognition
of several polyubiquitin-tagged proteins and facilitates
their presentation to the 26S proteasome for processive
degradation or even more specific processing.
Length = 147
Score = 33.1 bits (76), Expect = 0.15
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 88 VPLHPYDSEDLKEQEIKHI 106
PL P+D E LKE +IKH+
Sbjct: 39 SPLEPWDEEYLKEHKIKHM 57
>gnl|CDD|182208 PRK10046, dpiA, two-component response regulator DpiA; Provisional.
Length = 225
Score = 31.1 bits (70), Expect = 1.1
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 33/114 (28%)
Query: 490 VVPTTGVTAYEIKDDALKTGELDYI--------YGAALVRYQIAGNFL------------ 529
VV TT + E +A++ G DY+ G L R++ + L
Sbjct: 81 VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQID 140
Query: 530 --------GLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAM-QALCIS 574
G P +P G D P+ L + K + EP + H A + QAL IS
Sbjct: 141 EMFNAYARGEPKDELPTGID----PLTLNAVRKLFKEPGVQHTAETVAQALTIS 190
>gnl|CDD|222451 pfam13910, DUF4209, Domain of unknown function (DUF4209). This
short domain is found in bacteria and eukaryotes,
though not in yeasts or Archaea. It carries a highly
conserved RNxxxHG sequence motif.
Length = 97
Score = 29.2 bits (66), Expect = 1.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 15/76 (19%)
Query: 31 YLTANVKAPRMAGFLVKVFVWLLESP----ILGGLLLYILK-----------RNNLIHKF 75
L++ +K+ + A L + LL S LG L+ +L+ RN L H F
Sbjct: 16 LLSSGLKSNKNAPKLPSLLSELLASEELKTALGEALILLLRVLLGPPNGLNLRNVLWHGF 75
Query: 76 ISYAELEDSPLYVPLH 91
IS AE S L + L
Sbjct: 76 ISPAEFTPSYLSLLLL 91
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 31.3 bits (71), Expect = 1.8
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
Query: 21 SPPPPQPNQFYLTANVKAPRMAGF---LVKVFV-WLLESP--ILGGLLLYILKRNN---- 70
+ LT K + F L+ + V ++ ESP + GLL ++ RNN
Sbjct: 618 GSYKTNEDLPLLT---KREDIDLFSQTLLPILVSFVSESPFNEIIGLLGLLITRNNVSFV 674
Query: 71 --------LIHKFISYAEL 81
L+ IS AEL
Sbjct: 675 ATTKIGLSLLTTLISRAEL 693
>gnl|CDD|200086 TIGR01225, hutH, histidine ammonia-lyase. This enzyme deaminates
histidine to urocanic acid, the first step in histidine
degradation. It is closely related to phenylalanine
ammonia-lyase [Energy metabolism, Amino acids and
amines].
Length = 506
Score = 30.8 bits (70), Expect = 2.2
Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 26/134 (19%)
Query: 246 RLCGAILVGKTNMHELGAGTSGINPHYGVAR----------NPYDPSKITGGSSSGSAAV 295
+ AI+ + N L G SG+ V +P P K GS S +
Sbjct: 92 EVVRAIMALRLN--SLAKGYSGVRAE--VLDQLIALLNAGVHPVVPEK---GSVGASGDL 144
Query: 296 VAAGLCPVALGVDGGGSV-----RMPAA-LCGVVGFKPTFGRIPLSGVLPLNWTVGMVGI 349
A L +AL + G G RMPAA G +P G+ +N T M +
Sbjct: 145 --APLAHMALVLMGEGKAFFKGERMPAAEALAAAGLEPVTLA-AKEGLALINGTQAMTAL 201
Query: 350 LAATVEDALVVYAA 363
+ DA + A
Sbjct: 202 ALLALFDAEDLLRA 215
>gnl|CDD|215106 PLN00212, PLN00212, glutelin; Provisional.
Length = 493
Score = 29.8 bits (67), Expect = 4.3
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 455 SVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPT 493
+ F ++ ++QK R+ +IH+ F + DV+ +P
Sbjct: 126 QQFQQFLTEGQSQSQKFRDEHQKIHQ--FRQGDVVALPA 162
>gnl|CDD|163682 cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like,
N-terminal catalytic TIM barrel domain. This family of
bacterial enzymes is sequence-similar to
4-hydroxy-2-oxovalerate aldolase (HOA) but its exact
function is unknown. This family includes the
Bacteroides vulgatus Bvu_2661 protein and belongs to the
DRE-TIM metallolyase superfamily. DRE-TIM metallolyases
include 2-isopropylmalate synthase (IPMS),
alpha-isopropylmalate synthase (LeuA),
3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate
synthase, citramalate synthase, 4-hydroxy-2-oxovalerate
aldolase, re-citrate synthase, transcarboxylase 5S,
pyruvate carboxylase, AksA, and FrbC. These members all
share a conserved triose-phosphate isomerase (TIM)
barrel domain consisting of a core beta(8)-alpha(8)
motif with the eight parallel beta strands forming an
enclosed barrel surrounded by eight alpha helices. The
domain has a catalytic center containing a divalent
cation-binding site formed by a cluster of invariant
residues that cap the core of the barrel. In addition,
the catalytic site includes three invariant residues -
an aspartate (D), an arginine (R), and a glutamate (E) -
which is the basis for the domain name "DRE-TIM".
Length = 266
Score = 29.5 bits (67), Expect = 4.7
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 153 RMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV- 211
+ F+ + S K++ ++Y +DI S SV+D + +A
Sbjct: 54 AFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASG---------SVVDMIRVAFH 104
Query: 212 KDEID 216
K E D
Sbjct: 105 KHEFD 109
>gnl|CDD|144881 pfam01452, Rota_NSP4, Rotavirus non structural protein. This
protein has been called NSP4, NSP5, NS28, and NCVP5. The
final steps in the assembly of rotavirus occur in the
lumen of the endoplasmic reticulum (ER). Targeting of
the immature inner capsid particle (ICP) to this
compartment is mediated by the cytoplasmic tail of NSP4,
located in the ER membrane.
Length = 174
Score = 29.1 bits (65), Expect = 4.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 382 FPLLKSA---------TSISAIKLAKYDARYGWKVVEVTIPNI--EVMRLAHYLT 425
FP + S SI +K+AK + +KV++V + I ++RL Y T
Sbjct: 33 FPYIASVLTVLFTAHKASIPTMKVAKTTSGCSYKVIKVVVVTIFNTLLRLFGYKT 87
>gnl|CDD|149922 pfam09015, NgoMIV_restric, NgoMIV restriction enzyme. Members of
this family are prokaryotic DNA restriction enzymes,
exhibiting an alpha/beta structure, with a central
region comprising a mixed six-stranded beta-sheet with
alpha-helices on each side. A long 'arm' protrudes out
of the core of the domain between strands beta2 and
beta3 and is mainly involved in the tetramerisation
interface of the protein. These restriction enzymes
recognise the double-stranded sequence GCCGGC and cleave
after G-1.
Length = 277
Score = 29.4 bits (66), Expect = 5.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 467 KAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAAL 519
+AQ R + + RN + IVV T I AL TG++D +Y AL
Sbjct: 185 RAQNTRTEALNLIRNRKGRLPHIVVVTAEPLPSRIASLALGTGDIDCVYHFAL 237
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains
without catalytic isopeptidase activity (non
metal-binding); eukaryotic. This family contains MPN
(also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains
variants lacking key residues in the JAB1/MPN/Mov34
metalloenzyme (JAMM) motif and are unable to coordinate
a metal ion. Comparisons of key catalytic and metal
binding residues explain why the MPN-containing proteins
Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation
initiation factor 3 subunits f and h do not show
catalytic isopeptidase activity. It has been proposed
that the MPN domain in these proteins has a primarily
structural function. Rpn7 is known to be critical for
the integrity of the 26S proteasome complex by
establishing a correct lid structure. It is necessary
for the incorporation/anchoring of Rpn3 and Rpn12 to the
lid and essential for viability and normal mitosis. CSN6
is a highly conserved protein complex with diverse
functions, including several important intracellular
pathways such as the ubiquitin/proteasome system, DNA
repair, cell cycle, developmental changes, and some
aspects of immune responses. It cleaves ubiquitin-like
protein Nedd8 (neural precursor cell expressed,
developmentally downregulated 8)) in the cullin 1 in
cells. EIF3f s a potent inhibitor of HIV-1 replication
as well as an important negative regulator of cell
growth and proliferation. EIF3h regulates cell growth
and viability, and that over-expression of the gene may
provide growth advantage to prostate, breast, and liver
cancer cells.
Length = 157
Score = 28.6 bits (64), Expect = 5.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 65 ILKRNNLIHKFISYAELEDSPLYVPLHPYDSEDLKEQEIK 104
I K +N +H S E++PL + L P D ++ EI
Sbjct: 92 ISKSDNSLHSQFSL-ISEENPLILILDPSLQSDSEKLEIS 130
>gnl|CDD|224753 COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic
component [Inorganic ion transport and metabolism].
Length = 299
Score = 28.9 bits (65), Expect = 6.7
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 282 SKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLN 341
+ TGGSSS A VVA G V LG G+ A V P G
Sbjct: 157 ATYTGGSSSVVAKVVAGGEAAVGLGNLYYGAYAKDKAKGAPVEVV-----YPEEGTG--- 208
Query: 342 WTVGMVGILAAT 353
V +L
Sbjct: 209 VNPSGVALLKKA 220
>gnl|CDD|203238 pfam05351, GMP_PDE_delta, GMP-PDE, delta subunit. GMP-PDE delta
subunit was originally identified as a fourth subunit of
rod-specific cGMP phosphodiesterase (PDE)(EC:3.1.4.35).
The precise function of PDE delta subunit in the rod
specific GMP-PDE complex is unclear. In addition, PDE
delta subunit is not confined to photoreceptor cells but
is widely distributed in different tissues. PDE delta
subunit is thought to be a specific soluble transport
factor for certain prenylated proteins and Arl2-GTP a
regulator of PDE-mediated transport.
Length = 156
Score = 28.4 bits (64), Expect = 7.1
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 494 TGVTAYEI-KDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPI 547
TG +EI KD + + + VRYQ FL L V V + P+
Sbjct: 21 TGKVLFEIAKDPSDEDLPEEDPNAGREVRYQFPPKFLKLKTVGATVEFTVGDKPV 75
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 28.7 bits (65), Expect = 7.4
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 374 TVSLPKVSFPLLKSATSISAIKLAKYDARYGWKVVEVTIPNIEVMRL 420
+ P + +L T S ++LA+ G KV E I E+
Sbjct: 189 ELITPPLDGSILPGITRDSILELAR---DLGIKVEERPITRDELYEA 232
>gnl|CDD|177866 PLN02220, PLN02220, delta-9 acyl-lipid desaturase.
Length = 299
Score = 28.6 bits (64), Expect = 9.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 124 PLSSEKQPFFHR-WTVLDYSKAYSSG 148
+ EK+ FF R WT LD +A + G
Sbjct: 15 AVRKEKRAFFFRKWTRLDVVRASAVG 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,841,593
Number of extensions: 3094230
Number of successful extensions: 2911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2828
Number of HSP's successfully gapped: 82
Length of query: 589
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 487
Effective length of database: 6,413,494
Effective search space: 3123371578
Effective search space used: 3123371578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)