RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007794
(589 letters)
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 302 bits (777), Expect = 2e-97
Identities = 119/456 (26%), Positives = 193/456 (42%), Gaps = 46/456 (10%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
+L+ + +G TP + E + ++ + +EE K+A T +
Sbjct: 2 DLLEAKRLLETGRTTPLALLEEALERA-KAFQD---RNALAYLDEEAARKEALALTEELR 57
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
+G+ L G+ + VKD PT GTK P +A V RLR GA+L KT
Sbjct: 58 RGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLP--EEARAVRRLREAGALLFAKT 115
Query: 257 NMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
NMHE+ G +G NP G RN DPS+ GGSS GSA VA G+ +LG D GGS+R+P
Sbjct: 116 NMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIP 175
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQP--- 373
A GVVGFKP++GR+ L G LPL+ + G L +V DA + + G +
Sbjct: 176 AGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPLEGVQN 235
Query: 374 -TVSLPKVSF-----PLLKSATSISAIKLAKYDARYGWKVVEVTIPNIEVMRLAHYLTIG 427
+P ++ A + L A V EV++P V
Sbjct: 236 PVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAE----VREVSLPLEGV---------- 281
Query: 428 SECSTSLSSY------LQKINCSDQGWDA----RVALSVYGSFSSQEYIKAQKIRNHQMQ 477
E T L Y + + +G+ + + + ++Y A R
Sbjct: 282 YEVYTRLVRYEAARIHEKALKEHPEGFSPQVREALLAGLA--LTEKDYRDAVAEREALRL 339
Query: 478 IHRNVFAKADVIVVPTTGVTAYEI--KDDALKTGELDYIYGAALVRYQIAGNFLGLPAVT 535
D +++P + A + ++ L++G + A + + + LG+P +
Sbjct: 340 ELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHRE--AFITLTLPFSLLGVPTLA 397
Query: 536 VPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 571
+P G+P+GLQ +G + ++ + ++A
Sbjct: 398 LPFA-KVEGMPVGLQVVGAYGEDGKVLALGGWLEAR 432
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 293 bits (753), Expect = 4e-94
Identities = 107/446 (23%), Positives = 182/446 (40%), Gaps = 48/446 (10%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ E+ + F+ +++
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAI-EAREKEVHA--FVRHDKS-------------A 46
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
+ + L G+ + +KD ID + PT G++ +P DA VM L+ GA ++GKT
Sbjct: 47 RAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP-RSDAPVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
+ NP++ GG+SSGSAA V AG+ P+ALG GGSV P
Sbjct: 106 TTTAFASR------DPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRP 159
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPS------ 370
AA CG KP+F +P GV +W + VG+ A ED A+ G
Sbjct: 160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPA 219
Query: 371 QQPTVSLPKVSFPLLKSATSISAIKLA-KYDARYGWKVVEVTIPN-IEVMRLAHYLTIGS 428
+ P + + + F + ++ A K R G V + +P + H +
Sbjct: 220 KAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDF 279
Query: 429 ECSTSLSSYLQKINCSDQGWDARVALSVYGSF--SSQEYIKAQKIRNHQMQIHRNVFAKA 486
E +L+ + + S+ + + +EY +A++I + VF
Sbjct: 280 EAHRALAWEFSE---HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGV 336
Query: 487 DVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLP 546
DV++ + TA TG+ RY +G P V VPV GLP
Sbjct: 337 DVLLTYSAPGTAPAKALA--STGD---------PRYNRLWTLMGNPCVNVPVL-KVGGLP 384
Query: 547 IGLQFIGKPWSEPTLMHIAFAMQALC 572
IG+Q I + ++ + A+ ++
Sbjct: 385 IGVQVIARFGNDAHALATAWFLEDAL 410
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 282 bits (723), Expect = 2e-88
Identities = 136/509 (26%), Positives = 204/509 (40%), Gaps = 76/509 (14%)
Query: 127 SEKQPF-FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDIL 185
S PF + V D ++G++ + + ++ + ++ I N D L
Sbjct: 1 SRNVPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNP-DAL 59
Query: 186 KQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRL 245
K+A E + G L G+ + +KD I+ +P T+ G+ L RP DA V RL
Sbjct: 60 KEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRP--DDAYLVRRL 117
Query: 246 RLCGAILVGKTNMHELGAG-----TSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGL 300
R GA+++GKTN+ E SG + G RNPY S GSSSGSA VAA L
Sbjct: 118 RDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANL 177
Query: 301 CPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVV 360
VA+G + GS+ PAA+ GVVG KPT G + G++P++++ G +A +V DA V
Sbjct: 178 ASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAV 237
Query: 361 YAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIK------------------------L 396
AI G + T ++P + + ++
Sbjct: 238 LTAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAA 297
Query: 397 AKYDARYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQK-----------INCSD 445
+ G VV V +PN A + E L Y I +
Sbjct: 298 TELRRA-GAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQ 356
Query: 446 QGWDARV-----------ALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKA----DVIV 490
+ + + YI+A+ A A D +V
Sbjct: 357 AHSKQELGLFGQELLVEADAT--AGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALV 414
Query: 491 VPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQ 550
PTTGV E D G + Y A G P++TVP+G GLP+GL
Sbjct: 415 APTTGVAWP-------IRSEGDDFPGES---YSAA-AVAGYPSLTVPMGQ-IDGLPVGLL 462
Query: 551 FIGKPWSEPTLMHIAFAMQALCISEFRKP 579
F+G WSEP L+ +A+A + + R+P
Sbjct: 463 FMGTAWSEPKLIEMAYAYEQR--TRARRP 489
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 269 bits (689), Expect = 1e-83
Identities = 106/469 (22%), Positives = 179/469 (38%), Gaps = 54/469 (11%)
Query: 144 AYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISV 203
SG+I+ + E IA V ++ NP +++ I E +++
Sbjct: 16 LVRSGEISRTELLEATIAHV-QAVNP--EINAVIIPLFEKARRES---------ELASGP 63
Query: 204 LDGVLIAVKDEIDCSP-YPTTGGTKWL-HKVRPCTGDACCVMRLRLCGAILVGKTNMHEL 261
GV +KD S T K + DA V R+R G +L+GKTN E+
Sbjct: 64 FAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEM 123
Query: 262 GAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCG 321
G + +G RNP++ + GGSS GS A VAA L PVA G D G+VR+PA++CG
Sbjct: 124 GNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCG 183
Query: 322 VVGFKPTFGRIPLSGVLPLNWTVGM---VGILAATVEDALVVYAAINGPLPSQQPTVSLP 378
VVG KPT GRI ++ + V G+ A +V D + ++G P
Sbjct: 184 VVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTA 243
Query: 379 KVSFP--------------LLKSATSISAI---------KLAKYDARYGWKVVEVTIPNI 415
+ L + A+ A A G V + +
Sbjct: 244 SRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVNDAYPEAL 303
Query: 416 EVMRL--AHYLTIGSECSTSLSSYLQKINC----SDQGWDARVALSVYGSFSSQEYIKAQ 469
+ + + + I D W + + + + +
Sbjct: 304 GDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACV 363
Query: 470 KIRNHQMQIHRNVFAKA-DVIVVPTTGVTAYEIKDDALKTG-ELDYIYGAAL------VR 521
+ + D++++PT EI + L G +L+ A + +
Sbjct: 364 DELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLA 423
Query: 522 YQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 570
+ + N G PA+++P+G + G+PIG+Q + E L+ +A ++
Sbjct: 424 FTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEG 472
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 259 bits (663), Expect = 6e-80
Identities = 147/493 (29%), Positives = 220/493 (44%), Gaps = 76/493 (15%)
Query: 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATEST 192
+V + I P V + A+ E ++P + F+ ++E+ +K+A E
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAI-EETDP--TIKSFLALDKENAIKKAQELD 59
Query: 193 LRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAIL 252
K + L G+ + +KD I + TT +K L P ++ + +L A+L
Sbjct: 60 ELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVP-IYESTVMEKLHKENAVL 118
Query: 253 VGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
+GK NM E G S ++ NP+D + GGSS GSAA VAAGL P++LG D GGS
Sbjct: 119 IGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGS 178
Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGP----- 367
+R PAA CGVVG KPT+GR+ G++ ++ +G L V+D +V AI+G
Sbjct: 179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDS 238
Query: 368 --LPSQQP-------------TVSLPKVSF-----PLLKSATSISAIKLAKYDARYGWKV 407
P V+LPK +K A +A++ K G V
Sbjct: 239 TSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQ-NAVETLK---SLGAVV 294
Query: 408 VEVTIPNIEVMRLAHYLTIGSECSTSLSSY------LQKINCSD----------QGWDAR 451
EV++PN + ++Y+ SE S++LS + +G+
Sbjct: 295 EEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKE 354
Query: 452 V---------ALSV--YGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYE 500
V ALS Y ++ Y K+QK+R VF DV+V PT TA+
Sbjct: 355 VKRRIFLGTFALSSGYYDAY----YKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFN 410
Query: 501 I---KDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWS 557
+ DD L +Y L N GLP ++VP G + G PIGLQFIGKP+
Sbjct: 411 LGEEIDDPLT------MYANDL--LTTPVNLAGLPGISVPCG-QSNGRPIGLQFIGKPFD 461
Query: 558 EPTLMHIAFAMQA 570
E TL +A+ +
Sbjct: 462 EKTLYRVAYQYET 474
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 247 bits (633), Expect = 1e-75
Identities = 138/493 (27%), Positives = 223/493 (45%), Gaps = 82/493 (16%)
Query: 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATEST 192
+ ++ + + G+++P+ V E F + K+ +I LKQA
Sbjct: 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRY-NQTEE--KVKAYITPLYGKALKQAESL- 57
Query: 193 LRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAIL 252
E L G+ IAVKD I TT +K L DA + RL+ GA++
Sbjct: 58 -----KERELPLFGIPIAVKDNILVEGEKTTCASKILENFVA-PYDATVIERLKKAGALI 111
Query: 253 VGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
VGKTN+ E G+S + +NP+D ++ GGSS GSAA VA PV+LG D GGS
Sbjct: 112 VGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGS 171
Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGP----- 367
+R PA+ CGV+G KPT+GR+ G++ ++ +G+ ED +V I+G
Sbjct: 172 IRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDS 231
Query: 368 --LPSQQP-------------TVSLPKVSF-----PLLKSATSISAIKLAKYDARYGWKV 407
P + LPK F P +K A + IK + + G+++
Sbjct: 232 TSAKVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKEAFE-NFIKELE---KEGFEI 287
Query: 408 VEVTIPNIEVMRLAHYLTIGSECSTSLSSY------LQKINCSD----------QGWDAR 451
EV++P+++ +Y+ SE S++L+ Y + D +G+
Sbjct: 288 KEVSLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPE 347
Query: 452 V---------ALSV--YGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYE 500
V ALS Y ++ Y+KAQK+R F + DVI PTT ++
Sbjct: 348 VKRRIMLGTFALSAGYYDAY----YLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFK 403
Query: 501 I---KDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWS 557
++ ++ +Y + + + N GLPA+++P+ + GLP+G Q IGK W
Sbjct: 404 FGERLENPIE------MYLSDI--LTVPANLAGLPAISIPIAWK-DGLPVGGQLIGKHWD 454
Query: 558 EPTLMHIAFAMQA 570
E TL+ I++ +
Sbjct: 455 ETTLLQISYLWEQ 467
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 247 bits (633), Expect = 3e-75
Identities = 114/456 (25%), Positives = 174/456 (38%), Gaps = 67/456 (14%)
Query: 176 FINYNEEDILKQATESTL------RYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWL 229
+ E + A+E+ L VL G +A+KD + + P G++ +
Sbjct: 54 PPTTSREHAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTV 113
Query: 230 HKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSS 289
P DA V RL GA + GK +L S P G RNP+D + GGSS
Sbjct: 114 EGFTPSR-DATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSS 172
Query: 290 SGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGI 349
GSAA+VA G A+G D GGS+R+PAA CGVVG KPTFG +P +G P+ T+ +G
Sbjct: 173 GGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGP 232
Query: 350 LAATVEDALVVYAAING--PL-PSQQPTVSLPKVSFPLLKS---------------ATSI 391
+ TV DA ++ + I G P Q +V L A S
Sbjct: 233 ITRTVHDAALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGHAVSQ 292
Query: 392 SAIKLAKYDA-----RYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSL------------ 434
+ A A G V EV IP + + +
Sbjct: 293 PEVDDAVRAAAHSLTEIGCTVEEVNIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEG 352
Query: 435 -------SSYLQKINCSDQGWDARV---------ALSVYGSFSSQEYIKAQKIRNHQMQI 478
+ + + V ++ G Y KA+ +
Sbjct: 353 LYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLG---GASYGKARNLVPLARAA 409
Query: 479 HRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAAL--VRYQIAGNFLGLPAVTV 536
+ + DV+V+PT A E+ K + AL + + G P+++V
Sbjct: 410 YDTALRQFDVLVMPTLPYVASELPA---KDVDRATFITKALGMIANTAPFDVTGHPSLSV 466
Query: 537 PVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALC 572
P G GLP+G+ G+ + + T++ + A + L
Sbjct: 467 PAGLV-NGLPVGMMITGRHFDDATVLRVGRAFEKLR 501
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 244 bits (625), Expect = 2e-74
Identities = 131/480 (27%), Positives = 221/480 (46%), Gaps = 71/480 (14%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
+ + G+++P VA+ ++ V + +P + F++ NE +L++A +
Sbjct: 2 LAHEIRARVARGEVSPLEVAQAYLKRV-QELDP--GLGAFLSLNER-LLEEA-------E 50
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
+P L G+++AVKD I TT G++ L P +A V RL+ GA+++GKT
Sbjct: 51 AVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVP-PYEATAVARLKALGALVLGKT 109
Query: 257 NMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
N+ E G G+S + + +NP+DP ++ GGSS GSAA +AA L P+ALG D GGSVR P
Sbjct: 110 NLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQP 169
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP-----SQ 371
AA CGV G KPT+GR+ G++ ++ +G +A +V D ++ A GP P
Sbjct: 170 AAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLD 229
Query: 372 QP--------------TVSLPKVSFPLLKSATSISAIKLAKYDARYGWKVVEVTIPNIEV 417
P + + + + + + K G V EV+ P++
Sbjct: 230 LPPRFQEALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQ 289
Query: 418 MRLAHYLTIGSECSTSLSSY--------------LQKINCSDQGWDARV---------AL 454
A+Y+ +E S++L+ Y + + + V L
Sbjct: 290 ALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVL 349
Query: 455 SV--YGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEI--KDDALKTGE 510
S Y ++ Y +AQ R + +F + D++++PTT A+ + D L
Sbjct: 350 SSGYYEAY----YGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLA--- 402
Query: 511 LDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 570
+Y L Y + N GLPA++ P G++ LP+GLQ + + L+ A A +
Sbjct: 403 ---MYREDL--YTVGANLTGLPALSFPAGFE-GHLPVGLQLLAPWGEDERLLRAALAFEE 456
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 241 bits (617), Expect = 2e-73
Identities = 123/486 (25%), Positives = 213/486 (43%), Gaps = 86/486 (17%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
L + + + + + + + +P + FI+ E +++
Sbjct: 8 RKLTIEECLKLSEEEREKLPQLSLETI-KRLDP--HVKAFISVRENVSVEKK-------- 56
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
G+ +A+KD I TT ++ L DA V +++ G ++VGK
Sbjct: 57 -----GKFWGIPVAIKDNILTLGMRTTCASRILENYES-VFDATVVKKMKEAGFVVVGKA 110
Query: 257 NMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
N+ E G+S + RNP+D ++ GGSS GSAA V+AG+ ALG D GGSVR P
Sbjct: 111 NLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQP 170
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP-----SQ 371
A+LCGVVG+KPT+G + G++ ++ +G + TV DA ++ I+G
Sbjct: 171 ASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVN 230
Query: 372 QP--------------TVSLPKVSF-----PLLKSATSISAIKLAKYDARYGWKVVEVTI 412
+ ++P+ + + A+KL + R G KV V I
Sbjct: 231 RKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFE-EALKLLE---RLGAKVERVKI 286
Query: 413 PNIEVMRLAHYLTIGSECSTSLSSY--------LQKINCSD-------QGWDARV----- 452
P+I+ +Y+ +E S++L+ + +++ + G+ V
Sbjct: 287 PHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIM 346
Query: 453 ----ALSV--YGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEI--KDD 504
LS Y ++ + KA K+R V ++ D I+ PT+ VTA++I D
Sbjct: 347 IGTFTLSAAYYEAY----FNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKD 402
Query: 505 ALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHI 564
L Y + + I N GLPA++VP G+ LP+G+Q IG+ +++ + I
Sbjct: 403 PLT------YYLMDI--FTIPANLAGLPAISVPFGFS-NNLPVGVQVIGRRFADGKVFRI 453
Query: 565 AFAMQA 570
A A++
Sbjct: 454 ARAIEK 459
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 212 bits (541), Expect = 2e-61
Identities = 105/528 (19%), Positives = 180/528 (34%), Gaps = 106/528 (20%)
Query: 134 HRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTL 193
+L + SG+++P V ++ E N N + T+
Sbjct: 69 LTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEV-NK------GTNC----VTSYLTDCET 117
Query: 194 RYKKGEPISVLDGVLIAVKDEIDCSPYPTTGG-TKWLHKVRPCTGDACCVMRLRLCGAIL 252
+ + +L GV +++K+ + +T G + P D V L+L GA+
Sbjct: 118 QLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGM--PSESDCVVVQVLKLQGAVP 175
Query: 253 VGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
TN+ + NP +G NP+ SK GGSS G A++ +G P+ LG D GGS
Sbjct: 176 FVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGS 235
Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLP----LNWTVGMVGILAATVEDALVVYAAING-- 366
+R P+A CG+ G KPT R+ SG+ +G +A VE + A+
Sbjct: 236 IRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEH 295
Query: 367 ---------PLPSQQPTVSLPK-------VSFPLLKSATSIS-AIKLAKYD-ARYGWKVV 408
PLP ++ + + + ++ A+ K G ++
Sbjct: 296 LFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLI 355
Query: 409 EVTIPN----IEVMRLAHYLTIG---------SECSTSLSSYLQKINCSDQGWDARVALS 455
N +EV+ + G + L I + ++L
Sbjct: 356 PFLPNNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLL 415
Query: 456 V-------------YGSFSSQEYIKAQKIRNHQMQIHRNVFAKA--DVIVVPTTGVTAYE 500
+ S+++ K Q Q + DV++ P G
Sbjct: 416 LKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGP---- 471
Query: 501 IKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGY-------------------- 540
AL GA V Y + N L PA VPV
Sbjct: 472 ----ALDLNTPGRATGA--VSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIW 525
Query: 541 ---------DTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKP 579
++ GLP+ +Q + PW E + ++ L ++ ++P
Sbjct: 526 DIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL-MTPQKQP 572
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.2 bits (189), Expect = 7e-15
Identities = 86/608 (14%), Positives = 161/608 (26%), Gaps = 211/608 (34%)
Query: 66 LKRNNLIHKFISYAELEDSPLYVPLHPYDSED-----LKEQEIKHIDSDLSPPEKVQQA- 119
+ +++ F A +++ D +D L ++EI HI + + V
Sbjct: 16 YQYKDILSVFED-AFVDN------FDCKDVQDMPKSILSKEEIDHI---IMSKDAVSGTL 65
Query: 120 --IDCLPLSSEK--QPFFHRWTVLDYS---KAYSSGDITPRMVAERFIAAVRESSNPPMK 172
L E+ Q F ++Y + P M+ +I N
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 173 MSFFINYN---EEDI--LKQATESTLRYKKGEPISVLDG-------VLIA--VKDE-IDC 217
F YN + L+QA L + ++DG + + C
Sbjct: 126 ---FAKYNVSRLQPYLKLRQA----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 218 SPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGI--------- 268
WL+ + + M +L I N +S I
Sbjct: 179 KMD---FKIFWLNLKNCNSPETVLEMLQKLLYQI---DPNWTSRSDHSSNIKLRIHSIQA 232
Query: 269 -------NPHYG----VARNPYDP---------SKI--TGGSSSGSAAVVAAGLCPVALG 306
+ Y V N + KI T + + AA ++L
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 307 VDGGG-----SVRMPAALCGVVGFKPTFGRIPLS--GVLPLNWTVGMVGILAATVEDALV 359
+ L + +P +P P + I+A ++ D
Sbjct: 293 HHSMTLTPDEVKSL---LLKYLDCRP--QDLPREVLTTNPR-----RLSIIAESIRD--- 339
Query: 360 VYAAINGPLPSQQPTVSLPKVSFPLLKSA--TSISAIKLAKYDARYGWKVV---EVTIP- 413
G V+ L + +S++ ++ A+Y + V IP
Sbjct: 340 ------GLATWDN----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 414 -----------NIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSS 462
+VM + + L SL ++K +S+
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKL-----HKYSL---VEK-------QPKESTISIPSI--- 431
Query: 463 QEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIK-----DDALKTGELDYIYGA 517
Y++ + ++ +HR++ V Y I DD + Y Y
Sbjct: 432 --YLELKVKLENEYALHRSI-------------VDHYNIPKTFDSDDLIPPYLDQYFY-- 474
Query: 518 ALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFR 577
+ + G+ H+ ++ FR
Sbjct: 475 ---------SHI---------GH----------------------HLKNIEHPERMTLFR 494
Query: 578 KPKVFHDL 585
VF D
Sbjct: 495 --MVFLDF 500
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 88/526 (16%), Positives = 143/526 (27%), Gaps = 185/526 (35%)
Query: 76 ISYAELEDSPLYVP--LHPYDSEDLKEQEIKHI----------DSDLSPPEKVQQAIDCL 123
+S+ LE L VP S+ L+EQ K + D +P E V + + +
Sbjct: 11 LSHGSLEHV-LLVPTASFFIASQ-LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 124 PLSSEKQPFFHRWTVL-----DYSKAYSSG-DI----------------TPRMVAERFIA 161
E VL ++ Y G DI + + + +I
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 162 AVRESSNPPMKM--SFFIN---------Y-------NEEDILKQATESTLR--YKKGEP- 200
A + P K S N +D + E LR Y+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE---E--LRDLYQTYHVL 183
Query: 201 ----ISVLDGVLIA-VKDEIDCSPYPTTGG--TKWLHK--VRPCTGDACCVMRLRLCGAI 251
I L ++ +D T G +WL P + I
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-------PI 236
Query: 252 ---LVGKTNMHELGAGTSGINPHYGVAR-----NPYDPSKITGGSSSGSAAVVAAGLCPV 303
L+G + HY V P + G++ S +V A +
Sbjct: 237 SCPLIGVIQL-----------AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA--I 283
Query: 304 ALGVDG----GGSVRMPAAL--CGVVGFKPTFGRIPLS-GVLPLNWTVG------MV--- 347
A + L GV ++ + L +L + M+
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYE-AYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 348 GILAATVEDAL-----------VVYAA-INGP-----------L---------------- 368
+ V+D + V + +NG L
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 369 -----P-SQ-QPTVS---LPKVS--F--PLLKSATSISAIKLAKYDARYGWKVVEVTIPN 414
P S+ + S LP V+ F LL A+ + L K + + ++ IP
Sbjct: 403 DQSRIPFSERKLKFSNRFLP-VASPFHSHLLVPASDLINKDLVKNNVS--FNAKDIQIP- 458
Query: 415 IEVMRLAHYLTI-GS---ECSTSLSSYLQKINCSDQ-GWDARVALS 455
V Y T GS S S+S + W+
Sbjct: 459 --V-----YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Score = 55.4 bits (133), Expect = 4e-08
Identities = 98/532 (18%), Positives = 152/532 (28%), Gaps = 202/532 (37%)
Query: 146 SSGDITPRMV--AERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISV 203
S G + ++ F A + ++ F IL + TE EP +
Sbjct: 12 SHGSLEHVLLVPTASFFIASQ------LQEQF------NKILPEPTEGFA--ADDEPTTP 57
Query: 204 LDGVLIA-----VKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCG---AILVGK 255
+ L+ V ++ S G V+ L L L G
Sbjct: 58 AE--LVGKFLGYVSSLVEPSK----------------VGQFDQVLNLCLTEFENCYLEGN 99
Query: 256 TNMHELGAGTSGINP-----HYGVARNPYDPSKITG---GSSSGSAAVVAAGLCPVALGV 307
++H L A N + +N + S SA A G
Sbjct: 100 -DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-------- 150
Query: 308 DGGGSVRMPAALCGVVG-------FK------PTFGRIPLSGVLPLNWTVGMVGILAATV 354
G+ ++ A+ G G F+ T+ L G L + ++ + L T
Sbjct: 151 --EGNAQL-VAIFG--GQGNTDDYFEELRDLYQTYH--VLVGDL-IKFSAETLSELIRTT 202
Query: 355 EDALVVYAA-------INGP--LPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDARYGW 405
DA V+ + P P + +S+P +S PL
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-ISCPL--------------------- 240
Query: 406 KVVEVTIPNIEVMRLAHYLTIGSECSTS------LSSYLQKINCSDQGWDARVALSVYGS 459
I V++LAHY+ L SYL+ QG VA++ S
Sbjct: 241 ---------IGVIQLAHYVVT---AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 460 FSS--QEYIKAQKI------RNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGEL 511
+ S KA + R ++ P T + I +D+L+ E
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYE--------------AYPNTSLPP-SILEDSLENNE- 332
Query: 512 DYIYGAA---LVRYQIAGNFLGLPAVTVPVGYDTAGLP------IGL-----QFI--GKP 555
G L I+ L V V + LP I L + G P
Sbjct: 333 ----GVPSPMLS---ISN--LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 556 WSEPTLMHIAFAMQALCIS--------EF--RKPKV----------FH-DLL 586
S L + ++ F RK K FH LL
Sbjct: 384 QS---LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Score = 36.2 bits (83), Expect = 0.033
Identities = 42/225 (18%), Positives = 68/225 (30%), Gaps = 81/225 (36%)
Query: 1 M----GLFRAEGVVYKPVQETDTASPPPPQPNQFYLTANVKAPRMAGFLVKVFVWLLESP 56
M L + + V V +T++ P Q + + V + V
Sbjct: 338 MLSISNLTQEQ--VQDYVNKTNSHLPAG---KQVEI-SLVNGAKN-------LV------ 378
Query: 57 ILGG--LLLYILKRNNLIHKFISYAELEDS----------------PLYVPLH-PY---- 93
+ G LY L N + K + + L+ S P+ P H
Sbjct: 379 -VSGPPQSLYGL--NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 94 ---DSEDLKEQEIKHIDSDLSPP------------------EKVQQAIDCLPLSSEKQPF 132
++DL + + D+ P E++ I LP+ E
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 133 F---HRWTVLDYSKAYSSG--DITPRMVA---ERFIAAVRESSNP 169
F H +LD+ +SG +T R R I A NP
Sbjct: 496 FKATH---ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 31.9 bits (72), Expect = 0.69
Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 73/175 (41%)
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMV---GILAATV----EDALVVY--AAINGP 367
AAL + + V+ + V +V G+ E Y AIN
Sbjct: 1768 AALASL------------ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN-- 1813
Query: 368 LPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDARYGWKVVEVTIPNIEVMRLAHYLTIG 427
P + V+ SF S ++ + + + R GW +VE+ +Y
Sbjct: 1814 -PGR---VA---ASF----SQEALQYV-VERVGKRTGW-LVEI----------VNY---- 1846
Query: 428 SECSTSLSSYLQKINCSDQ-----GWDARVALSVYGSFSSQEYIKAQKIRNHQMQ 477
N +Q G D R AL + + +IK QKI ++Q
Sbjct: 1847 --------------NVENQQYVAAG-DLR-ALDTVTNVLN--FIKLQKIDIIELQ 1883
Score = 28.1 bits (62), Expect = 9.8
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 23/109 (21%)
Query: 480 RNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVG 539
++V+ +AD T G + +I + L +G + +I N+ +
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPV--NLTIHFGGEKGK-RIRENYSAMI------- 1692
Query: 540 YDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYK 588
++T GK +E I + FR K LL
Sbjct: 1693 FETIV-------DGKLKTEKIFKEINEHSTSYT---FRSEK---GLLSA 1728
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double
helix, restriction endonuclease, restriction-modifiction
systems, hydrolase; HET: DNA; 1.60A {Neisseria
gonorrhoeae} SCOP: c.52.1.10 PDB: 4abt_A
Length = 286
Score = 30.9 bits (69), Expect = 1.1
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 467 KAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAG 526
+AQ R+ + + RN + IVV T T I AL TGE+D +Y AL +
Sbjct: 194 RAQNARSEGLNLVRNRKGRLPHIVVVTAEPTPSRISSIALGTGEIDCVYHFALYELEQIL 253
Query: 527 NFLG 530
L
Sbjct: 254 QSLN 257
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.3
Identities = 3/30 (10%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 99 KEQEIKHIDSDLSP--PEK-----VQQAID 121
++Q +K + + L + ++ ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 28.6 bits (64), Expect = 4.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 91 HPYDSEDLKEQEIKHIDSDLSPPEKVQQA 119
H E+L Q K D + EKVQ A
Sbjct: 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSA 38
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 6.2
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 16/81 (19%)
Query: 73 HKFISYAELEDSP------LYVPLHPYDSEDLKEQEIKHIDSDLSPPEKVQQAIDCLPLS 126
+ +S EL D+ L + P+++ ++ + + S+ + + +D
Sbjct: 145 IRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVD----- 199
Query: 127 SEKQPFFHRWTVLDY-SKAYS 146
+ T D SK Y
Sbjct: 200 ----ELNKKCTFWDAISKLYY 216
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,333,850
Number of extensions: 591315
Number of successful extensions: 1180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1133
Number of HSP's successfully gapped: 35
Length of query: 589
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 490
Effective length of database: 3,937,614
Effective search space: 1929430860
Effective search space used: 1929430860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)