RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007794
(589 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 266 bits (680), Expect = 5e-83
Identities = 135/483 (27%), Positives = 209/483 (43%), Gaps = 56/483 (11%)
Query: 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATEST 192
+V + I P V + A+ E ++P + F+ ++E+ +K+A E
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAI-EETDP--TIKSFLALDKENAIKKAQELD 59
Query: 193 LRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAIL 252
K + L G+ + +KD I + TT +K L ++ + +L A+L
Sbjct: 60 ELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEG-FVPIYESTVMEKLHKENAVL 118
Query: 253 VGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
+GK NM E G S ++ NP+D + GGSS GSAA VAAGL P++LG D GGS
Sbjct: 119 IGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGS 178
Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 372
+R PAA CGVVG KPT+GR+ G++ ++ +G L V+D +V AI+G +
Sbjct: 179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDS 238
Query: 373 PTVSLPKVSFPLLKSATSISAIKLAKYD----------------------ARYGWKVVEV 410
+ + V F I +K+A G V EV
Sbjct: 239 TSAPVDDVDFTSEIGK-DIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEV 297
Query: 411 TIPNIEVMRLAHYLTIGSECSTSLSSY------------------LQKINCSDQGWDARV 452
++PN + ++Y+ SE S++LS + + G + +
Sbjct: 298 SLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKR 357
Query: 453 ALSVYGSFSSQEYIKA-----QKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALK 507
+ + S Y A QK+R VF DV+V PT TA+ + ++
Sbjct: 358 RIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEI-- 415
Query: 508 TGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFA 567
D + A N GLP ++VP G G PIGLQFIGKP+ E TL +A+
Sbjct: 416 ---DDPLTMYANDLLTTPVNLAGLPGISVPCGQSN-GRPIGLQFIGKPFDEKTLYRVAYQ 471
Query: 568 MQA 570
+
Sbjct: 472 YET 474
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 215 bits (547), Expect = 1e-63
Identities = 125/491 (25%), Positives = 213/491 (43%), Gaps = 73/491 (14%)
Query: 139 LDYSK-----AYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTL 193
LD+ K + + + + + + +P + FI+ E +++
Sbjct: 4 LDFRKLTIEECLKLSEEEREKLPQLSLETI-KRLDP--HVKAFISVRENVSVEKK----- 55
Query: 194 RYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILV 253
G+ +A+KD I TT ++ L DA V +++ G ++V
Sbjct: 56 --------GKFWGIPVAIKDNILTLGMRTTCASRILENYES-VFDATVVKKMKEAGFVVV 106
Query: 254 GKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV 313
GK N+ E G+S + RNP+D ++ GGSS GSAA V+AG+ ALG D GGSV
Sbjct: 107 GKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSV 166
Query: 314 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP---- 369
R PA+LCGVVG+KPT+G + G++ ++ +G + TV DA ++ I+G
Sbjct: 167 RQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDAT 226
Query: 370 ----------SQQPTVSLPKVSFPLLKSATSISAIKLAKYDA------RYGWKVVEVTIP 413
+ VS K + P I +++ R G KV V IP
Sbjct: 227 TVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIP 286
Query: 414 NIEVMRLAHYLTIGSECSTSLSSYLQ-----------------KINCSDQGWDARVALSV 456
+I+ +Y+ +E S++L+ + K G + R + +
Sbjct: 287 HIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMI 346
Query: 457 YGSFSSQEYIKAQ-----KIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGEL 511
S Y +A K+R V ++ D I+ PT+ VTA++I +
Sbjct: 347 GTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIK------ 400
Query: 512 DYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 571
D + + + I N GLPA++VP G+ LP+G+Q IG+ +++ + IA A++
Sbjct: 401 DPLTYYLMDIFTIPANLAGLPAISVPFGFSN-NLPVGVQVIGRRFADGKVFRIARAIEK- 458
Query: 572 CISEFRKPKVF 582
S + + +F
Sbjct: 459 -NSPYNENGMF 468
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 181 bits (460), Expect = 2e-51
Identities = 129/505 (25%), Positives = 201/505 (39%), Gaps = 70/505 (13%)
Query: 131 PF-FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQAT 189
PF + V D ++G++ + + ++ + ++ I N D LK+A
Sbjct: 1 PFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNP-DALKEAA 59
Query: 190 ESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCG 249
E + G L G+ + +KD I+ +P T+ G+ L RP DA V RLR G
Sbjct: 60 ERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD--DAYLVRRLRDAG 117
Query: 250 AILVGKTNMHELGAGT-----SGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVA 304
A+++GKTN+ E SG + G RNPY S GSSSGSA VAA L VA
Sbjct: 118 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 177
Query: 305 LGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 364
+G + GS+ PAA+ GVVG KPT G + G++P++++ G +A +V DA V AI
Sbjct: 178 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI 237
Query: 365 NGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDA----------------------- 401
G + T ++P + + ++ +
Sbjct: 238 AGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELR 297
Query: 402 RYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYL----------------------- 438
R G VV V +PN A + E L Y
Sbjct: 298 RAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQ 357
Query: 439 -QKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVT 497
+ + +A + + A+++ + + D +V PTTGV
Sbjct: 358 ELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVA 417
Query: 498 AYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWS 557
+ A G P++TVP+G GLP+GL F+G WS
Sbjct: 418 W-----------PIRSEGDDFPGESYSAAAVAGYPSLTVPMGQ-IDGLPVGLLFMGTAWS 465
Query: 558 EPTLMHIAFAMQALCISEFRKPKVF 582
EP L+ +A+A + + R+P F
Sbjct: 466 EPKLIEMAYAYEQ--RTRARRPPHF 488
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 150 bits (379), Expect = 1e-40
Identities = 103/443 (23%), Positives = 173/443 (39%), Gaps = 43/443 (9%)
Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
++ D + +G+++P + AA+ E+ ++ F+ +++
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAI-EAREK--EVHAFVRHDKS-------------A 46
Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
+ + L G+ + +KD ID + PT G++ +P + VM L+ GA ++GKT
Sbjct: 47 RAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDA-PVVMMLKRAGATIIGKT 105
Query: 257 NMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
+ NP++ GGSSSGSAA V AG+ P+ALG GGSV P
Sbjct: 106 TTTAFASR------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRP 159
Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS 376
AA CG KP+F +P GV +W + VG+ A ED A+ G +
Sbjct: 160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPA 219
Query: 377 LPKVS-------FPLLKSATSISAIKLAKYDARYGWKVVEVTIPNIEVMRLAHYLTIGSE 429
++ A K R G V + +P + I
Sbjct: 220 KAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDF 279
Query: 430 CSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVI 489
+ ++ + + R +L + +EY +A++I + VF DV+
Sbjct: 280 EAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVL 339
Query: 490 VVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGL 549
+ + TA + RY +G P V VPV GLPIG+
Sbjct: 340 LTYSAPGTAPAKALAST-----------GDPRYNRLWTLMGNPCVNVPVL-KVGGLPIGV 387
Query: 550 QFIGKPWSEPTLMHIAFAM-QAL 571
Q I + ++ + A+ + AL
Sbjct: 388 QVIARFGNDAHALATAWFLEDAL 410
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 149 bits (377), Expect = 2e-39
Identities = 102/550 (18%), Positives = 177/550 (32%), Gaps = 110/550 (20%)
Query: 108 SDLSPPEKVQQAIDCLPLSSE--KQPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRE 165
+ E + +A+ L + +L + SG+++P V ++
Sbjct: 11 KQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKA-W 69
Query: 166 SSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGG 225
N + +Y + + + + +L GV +++K+ + +T G
Sbjct: 70 EVNK--GTNCVTSYLTDCETQLS--------QAPRQGLLYGVPVSLKECFSYKGHDSTLG 119
Query: 226 TKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKIT 285
+ D V L+L GA+ TN+ + NP +G NP+ SK
Sbjct: 120 LSLNEGMPS-ESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSP 178
Query: 286 GGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNW--- 342
GGSS G A++ +G P+ LG D GGS+R P+A CG+ G KPT R+ SG+ +
Sbjct: 179 GGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQT 238
Query: 343 -TVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDA 401
+G +A VE + A+ P + ++ + + D
Sbjct: 239 AVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN 298
Query: 402 RYG--------------------WKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKI 441
++ NI L+ G S S+LQ
Sbjct: 299 YTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYA--LEVLSAGGLFSDGGRSFLQNF 356
Query: 442 NCS--------------DQGWDARV--------------ALSVYGSFSSQEYIKAQKIRN 473
W R+ L+ S+++ K Q
Sbjct: 357 KGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIE 416
Query: 474 HQMQIHRNVFAKA--DVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGL 531
Q + DV++ P G A ++ TG + Y + N L
Sbjct: 417 MYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRATG---------AISYTVLYNCLDF 466
Query: 532 PAVTVPVGY-----------------------------DTAGLPIGLQFIGKPWSEPTLM 562
PA VPV ++ GLP+ +Q + PW E +
Sbjct: 467 PAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCL 526
Query: 563 HIAFAM-QAL 571
+ Q +
Sbjct: 527 RFMREVEQLM 536
>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's
yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 320
Score = 32.6 bits (74), Expect = 0.11
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 442 NCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQ--IHRNVFAKADVIVVPTTGVTAY 499
N D A++ L Y F ++ KA + N + Q +H N FA+ V+ T Y
Sbjct: 1 NNIDFDSIAKMLLIKYKDFILSKFKKAAPVENIRFQNLVHTNQFAQ-GVLGQSQHLCTVY 59
Query: 500 E---IKDDALKTGELDYIYGAALVRYQIAGNF 528
+ L+T +LD IY + G+
Sbjct: 60 DNPSWHSIVLETLDLDLIYKNVDKEFAKDGHA 91
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 286
Score = 29.2 bits (65), Expect = 1.2
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 467 KAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAAL 519
+AQ R+ + + RN + IVV T T I AL TGE+D +Y AL
Sbjct: 194 RAQNARSEGLNLVRNRKGRLPHIVVVTAEPTPSRISSIALGTGEIDCVYHFAL 246
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 27.6 bits (60), Expect = 4.9
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 150 ITPRMVAERFIAAVRESSNPPMKMSFFINYNEE--DILKQATESTLRYKKGEPISVLDGV 207
I PR + + F + +K+S YNEE D+L +++ + R + + GV
Sbjct: 118 IIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 177
Query: 208 LIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSG 267
+I +EI + T ++ +M E
Sbjct: 178 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 237
Query: 268 I 268
+
Sbjct: 238 L 238
>d1rqwa_ b.25.1.1 (A:) Thaumatin {Ketemfe (Thaumatococcus daniellii)
[TaxId: 4621]}
Length = 207
Score = 26.1 bits (57), Expect = 9.8
Identities = 15/92 (16%), Positives = 23/92 (25%), Gaps = 12/92 (13%)
Query: 248 CGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVA-----AGLCP 302
C T + E G + ++ + ++ V G CP
Sbjct: 77 CKRFGRPPTTLAEFSLNQYG-KDYIDISNIKGFNVPMDFSPTTRGCRGVRCAADIVGQCP 135
Query: 303 VALGVDGGGS------VRMPAALCGVVGFKPT 328
L GGG + C PT
Sbjct: 136 AKLKAPGGGCNDACTVFQTSEYCCTTGKCGPT 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,248,747
Number of extensions: 108586
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 12
Length of query: 589
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 499
Effective length of database: 1,171,896
Effective search space: 584776104
Effective search space used: 584776104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)