BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007795
(589 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BJ34|MARF1_MOUSE Meiosis arrest female protein 1 OS=Mus musculus GN=Marf1 PE=1 SV=3
Length = 1730
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 32 VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
V+WDIENC VP T+ Q I + + D ++ V L++ +
Sbjct: 354 VFWDIENCSVPSGRSATTVVQRIREKFFRGH--REAEFICVCDISKENKEVIQELNNCQV 411
Query: 92 ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
+ H+ A K+A+D K+ + +A + AP+ +L+S D +F+ L LR R ++I+L
Sbjct: 412 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 471
Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
++AS L+ A + + ++ PP
Sbjct: 472 VHKNQASEALLHHANQLIRFEEFISDLPP 500
>sp|Q8VIG2|MARF1_RAT Meiosis arrest female protein 1 OS=Rattus norvegicus GN=Marf1 PE=1
SV=2
Length = 1735
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 32 VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
V+WDIENC VP T+ Q I + + D ++ V L++ +
Sbjct: 353 VFWDIENCSVPSGRSATTVVQRIREKFFRGHR--EAEFICVCDISKENKEVIQELNNCQV 410
Query: 92 ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
+ H+ A K+A+D K+ + +A + AP+ +L+S D +F+ L LR R ++I+L
Sbjct: 411 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 470
Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
++AS L+ A + + ++ PP
Sbjct: 471 VHKNQASEALLHHANQLIRFEEFISDLPP 499
>sp|E1BZ85|MARF1_CHICK Meiosis arrest female protein 1 homolog OS=Gallus gallus GN=MARF1
PE=3 SV=1
Length = 1741
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 32 VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
V+WDIENC VP + Q I K + D ++ V L++ +
Sbjct: 347 VFWDIENCSVPTGRSAVAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 404
Query: 92 ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
+ H+ A K+A+D K+ + +A + AP+ +L+S D +F+ L LR R + I+L
Sbjct: 405 TVAHINATAKNAADDKLRQSLRRFADTHTAPATVVLVSTDVNFALELSDLRHRHGFRIIL 464
Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
++AS L+ A + + ++ PP
Sbjct: 465 VHKNQASEALLHHAHELVCFEEFISDLPP 493
>sp|B2GUN4|MARF1_XENTR Meiosis arrest female protein 1 homolog OS=Xenopus tropicalis
GN=marf1 PE=2 SV=1
Length = 1681
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 3/166 (1%)
Query: 15 APMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGD 74
+P +T + Q V+WDIENC VP T+ + I L K + D
Sbjct: 325 SPDLATGQMQENLPPIGVFWDIENCSVPSGRSAVTVVKRIRERLFKGH--REAEFICVCD 382
Query: 75 TNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDF 134
++ V L++ + + H+ A K+A+D K+ + +A + +P+ +L+S D +F
Sbjct: 383 ISKENKEVIEELNNCQVTVAHINATAKNAADDKLRQSLRRFADTHTSPATVVLVSTDVNF 442
Query: 135 SNALHQLRMRR-YNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
+ L LR R ++I+L ++AS L+ A + + ++ PP
Sbjct: 443 ALELSDLRHRHSFHIILIHKNQASEALLHHAHELIHFEEFISDLPP 488
>sp|Q9Y4F3|MARF1_HUMAN Meiosis arrest female protein 1 OS=Homo sapiens GN=KIAA0430 PE=1
SV=6
Length = 1742
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 32 VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
V+WDIENC VP + Q I K + D ++ V L++ +
Sbjct: 355 VFWDIENCSVPSGRSATAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 412
Query: 92 ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
+ H+ A K+A+D K+ + +A + AP+ +L+S D +F+ L LR R ++I+L
Sbjct: 413 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 472
Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
++AS L+ A + + ++ PP
Sbjct: 473 VHKNQASEALLHHANELIRFEEFISDLPP 501
>sp|E1BP74|MARF1_BOVIN Meiosis arrest female protein 1 OS=Bos taurus GN=MARF1 PE=3 SV=2
Length = 1742
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 32 VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
V+WDIENC VP + Q I K + D ++ V L++ +
Sbjct: 353 VFWDIENCSVPSGRSATAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 410
Query: 92 ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
+ H+ A K+A+D K+ + +A + AP+ +L+S D +F+ L LR R ++I+L
Sbjct: 411 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 470
Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
++AS L+ A + + ++ PP
Sbjct: 471 VHKNQASEALLHHANELIRFEEFISDLPP 499
>sp|B2UXC6|HEM1_CLOBA Glutamyl-tRNA reductase OS=Clostridium botulinum (strain Alaska E43
/ Type E3) GN=hemA PE=3 SV=1
Length = 401
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 338 ELKSSYFESPNPASLNVPQK---GHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPA 394
++K+SYF+S N +LN+ + +A+ G+ SR E P SS+S +
Sbjct: 112 QVKTSYFKSLNAKALNLELQRLFQYAITCGKKF------KSQSRLFEIPVSSASIVVNES 165
Query: 395 SSNG-------GWGTQGRLTPSEYVQGLIGVILLALNTLKI-ERVVPSEANITDCIRYGE 446
+ G+G GRLT + I + LA+ KI + +V N+ D + E
Sbjct: 166 INKDCKKFMVLGYGDVGRLTMKYLLAHNINEVYLAVRNKKIKDEIVDERVNVID---FEE 222
Query: 447 PKHRNTDVRKALNCAIEQHMVIKR 470
D+ ++C H+VIK+
Sbjct: 223 KNKYINDMDCVISCTSAPHIVIKK 246
>sp|B2TPD9|HEM1_CLOBB Glutamyl-tRNA reductase OS=Clostridium botulinum (strain Eklund 17B
/ Type B) GN=hemA PE=3 SV=1
Length = 401
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 338 ELKSSYFESPNPASLNVPQK---GHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPA 394
++K+SYF+S N +LN+ + +A+ G+ SR E P SS+S +
Sbjct: 112 QVKTSYFKSLNAKALNLELQRLFQYAITCGKKF------KSQSRLFEIPVSSASIVVNES 165
Query: 395 SSNG-------GWGTQGRLTPSEYVQGLIGVILLALNTLKI-ERVVPSEANITDCIRYGE 446
+ G+G GRLT + I + LA+ KI + ++ N+ D + E
Sbjct: 166 INKDCKKFMVLGYGDVGRLTMKYLLAHNINEVYLAVRNKKIKDEIMDKRVNVID---FEE 222
Query: 447 PKHRNTDVRKALNCAIEQHMVIKR 470
D+ ++C H+VIK+
Sbjct: 223 KNKYINDMDCVISCTSAPHIVIKK 246
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
Length = 2946
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 13/143 (9%)
Query: 281 LPHNSQNHGF--RPIPPSSNGPRFPPAPPANLPDIGKLNMSEYP----NYAQNCPNFHPQ 334
+PH S NHGF + IP S G F PA PD K + P + P+
Sbjct: 1617 IPHPSLNHGFLAKLIPEQSFGHSFYKETPAAFPDTIKEKETPTPGEDIQVESSIPHTDSG 1676
Query: 335 SGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPA 394
GEE +S N A L P + +L+S + E + S T PA
Sbjct: 1677 IGEEQVASIL---NGAELETSTG----PDAMSELLSTLSSEVKKSQESLTENPSETLKPA 1729
Query: 395 SSNGGWGTQGRLTPSEYVQGLIG 417
+S + E ++ L+
Sbjct: 1730 TSISSISQTKGINVKEILKSLVA 1752
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,005,580
Number of Sequences: 539616
Number of extensions: 10823388
Number of successful extensions: 24907
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 209
Number of HSP's that attempted gapping in prelim test: 24349
Number of HSP's gapped (non-prelim): 699
length of query: 589
length of database: 191,569,459
effective HSP length: 123
effective length of query: 466
effective length of database: 125,196,691
effective search space: 58341658006
effective search space used: 58341658006
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)