Query 007795
Match_columns 589
No_of_seqs 140 out of 267
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qip_A Protein of unknown func 99.7 5.9E-17 2E-21 149.0 7.9 143 28-174 10-163 (165)
2 3sho_A Transcriptional regulat 62.1 30 0.001 30.7 8.4 96 65-170 40-138 (187)
3 2xhz_A KDSD, YRBH, arabinose 5 59.0 37 0.0013 30.0 8.4 96 65-171 50-148 (183)
4 1jeo_A MJ1247, hypothetical pr 53.0 28 0.00097 30.8 6.6 90 65-171 41-133 (180)
5 3k94_A Thiamin pyrophosphokina 47.6 57 0.002 31.5 8.2 90 58-155 37-131 (223)
6 1eci_A Ectatomin; pore-forming 45.9 15 0.00053 26.8 2.9 34 498-538 3-36 (37)
7 3mel_A Thiamin pyrophosphokina 42.1 41 0.0014 32.4 6.2 92 56-154 34-134 (222)
8 1m3s_A Hypothetical protein YC 40.4 68 0.0023 28.5 7.0 90 65-170 38-130 (186)
9 3s4y_A Thiamin pyrophosphokina 39.4 97 0.0033 30.4 8.5 81 71-154 72-163 (247)
10 2yva_A DNAA initiator-associat 38.6 1.7E+02 0.0058 26.1 9.4 104 64-170 41-163 (196)
11 1vim_A Hypothetical protein AF 38.0 65 0.0022 29.5 6.6 89 65-169 48-139 (200)
12 3fxa_A SIS domain protein; str 37.2 56 0.0019 29.5 6.0 95 65-171 46-144 (201)
13 3i9v_6 NADH-quinone oxidoreduc 36.3 21 0.0007 34.3 3.0 27 403-432 138-164 (181)
14 3o6p_A Peptide ABC transporter 35.5 10 0.00035 34.8 0.8 29 446-474 17-45 (229)
15 3etn_A Putative phosphosugar i 34.7 2E+02 0.0067 26.8 9.5 95 65-170 60-159 (220)
16 1x92_A APC5045, phosphoheptose 34.3 1.1E+02 0.0038 27.4 7.5 49 121-170 113-167 (199)
17 3lvu_A ABC transporter, peripl 32.6 19 0.00063 33.7 2.1 29 446-474 14-42 (258)
18 3kn3_A Putative periplasmic pr 31.7 39 0.0013 33.2 4.2 48 473-520 187-238 (242)
19 3lm8_A Thiamine pyrophosphokin 30.7 1.4E+02 0.0048 28.7 7.9 89 58-155 38-134 (222)
20 3muq_A Uncharacterized conserv 29.5 31 0.001 33.6 3.0 67 454-520 154-233 (237)
21 1u8x_X Maltose-6'-phosphate gl 29.0 93 0.0032 33.3 6.9 109 28-152 57-194 (472)
22 1o6d_A Hypothetical UPF0247 pr 27.1 2.3E+02 0.0079 26.5 8.4 42 132-173 81-124 (163)
23 2f06_A Conserved hypothetical 27.1 1.8E+02 0.0063 25.0 7.4 77 53-149 57-136 (144)
24 3pam_A Transmembrane protein; 26.3 24 0.00082 33.0 1.6 28 447-474 15-42 (259)
25 3sg0_A Extracellular ligand-bi 25.5 2.4E+02 0.0081 26.8 8.4 99 45-152 141-245 (386)
26 3cq9_A Uncharacterized protein 23.7 51 0.0017 32.0 3.4 90 57-153 36-134 (227)
27 2lci_A Protein OR36; structura 22.7 2.4E+02 0.0081 25.1 7.1 69 81-156 17-86 (134)
28 3ihk_A Thiamin pyrophosphokina 22.3 1.7E+02 0.0057 28.0 6.7 66 56-128 30-95 (218)
29 1olt_A Oxygen-independent copr 22.0 3.2E+02 0.011 28.4 9.2 51 46-96 119-169 (457)
30 3l8m_A Probable thiamine pyrop 21.0 3.3E+02 0.011 25.9 8.4 88 57-153 34-130 (212)
31 3snr_A Extracellular ligand-bi 20.9 2E+02 0.0069 26.9 6.9 99 45-152 117-221 (362)
32 1to0_A Hypothetical UPF0247 pr 20.0 5.2E+02 0.018 24.1 9.4 42 132-173 86-130 (167)
No 1
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=99.67 E-value=5.9e-17 Score=148.97 Aligned_cols=143 Identities=20% Similarity=0.215 Sum_probs=111.8
Q ss_pred CceEEEEEecCCCCCCCCChhhhHHHHHHHHHhcCccCce-EEEEEecCCC--CChhHHHHhhhcCCceeeccC------
Q 007795 28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPV-SISAYGDTNR--IPASVQHALSSTGIALNHVPA------ 98 (589)
Q Consensus 28 AkTaVFWDIENCPVP~G~da~~V~~NIrsAL~klGY~GpV-TIrAYGD~s~--ip~~vr~aLsSSGIsLihVPa------ 98 (589)
.+++||||.+||..... +......+++..++.+...|.+ ..++||++.. .....+++|...||+++..|.
T Consensus 10 ~rvavfiD~~Nl~~~~~-~~~~~~~d~~~l~~~~~~~g~l~~~~~Y~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~ 88 (165)
T 2qip_A 10 EKIAILVDVQNVYYTCR-EAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDG 88 (165)
T ss_dssp EEEEEEEEHHHHHHHHH-HHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSC
T ss_pred CcEEEEEEHHHHHHHHH-HHcCCCCCHHHHHHHHhcCCEEEEEEEEEccCCchhHHHHHHHHHHCCcEEEEEeeeeccCC
Confidence 47999999999986421 0000011234444444445766 5799998764 235577899999999988773
Q ss_pred CCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCcchHHHHHHHhhc-CCeEEEeccCC-CChhHHhhcCeEEEecccc
Q 007795 99 GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMR-RYNILLAQPHK-ASAPLVAAAKSVWLWTSLV 174 (589)
Q Consensus 99 G~KdAADkkMlVDML~WAldNPpPANIMLISGDrDFS~aL~~LR~R-GYNILLAqP~n-AS~~L~~aAd~vWlWeSLL 174 (589)
..|++.|..|.+||+.++ +..++++|+|||.||.+++..||++ |+.|+++...+ ++..|..+|+.++.+++++
T Consensus 89 ~~k~~~Dv~laiD~~~~a---~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~~~~ 163 (165)
T 2qip_A 89 SAKGDWDVGITLDAIEIA---PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF 163 (165)
T ss_dssp CCSCCCHHHHHHHHHHHG---GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECSGGG
T ss_pred ccCCCccHHHHHHHHHhh---ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecchhh
Confidence 368899999999999997 6689999999999999999999997 99999988544 7899999999999998875
No 2
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=62.07 E-value=30 Score=30.72 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=59.5
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCc---chHHHHHHH
Q 007795 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (589)
Q Consensus 65 GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGDr---DFS~aL~~L 141 (589)
.+|.|.+.|.....-..+...|...|+.+..++.+. ..+.+. +..-.+-+-+++||... +...++..+
T Consensus 40 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~------~~~~~~---~~~~~~~d~~i~iS~sG~t~~~~~~~~~a 110 (187)
T 3sho_A 40 DHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGG------STLTIT---LANLRPTDLMIGVSVWRYLRDTVAALAGA 110 (187)
T ss_dssp SEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCT------HHHHHH---HHTCCTTEEEEEECCSSCCHHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCc------hhHHHH---HhcCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 456666666644444556677888898887775211 111111 11223345567777543 566778888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEe
Q 007795 142 RMRRYNILLAQPHKASAPLVAAAKSVWLW 170 (589)
Q Consensus 142 R~RGYNILLAqP~nAS~~L~~aAd~vWlW 170 (589)
+++|..|+++.... ..+|...|+.++.-
T Consensus 111 k~~g~~vi~IT~~~-~s~l~~~ad~~l~~ 138 (187)
T 3sho_A 111 AERGVPTMALTDSS-VSPPARIADHVLVA 138 (187)
T ss_dssp HHTTCCEEEEESCT-TSHHHHHCSEEEEC
T ss_pred HHCCCCEEEEeCCC-CCcchhhCcEEEEe
Confidence 89999999887543 35688888877654
No 3
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=59.03 E-value=37 Score=30.03 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=60.0
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCc---chHHHHHHH
Q 007795 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (589)
Q Consensus 65 GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGDr---DFS~aL~~L 141 (589)
++|.|.+.|.....-..+...|...|+....+... ..+.. .+..-.+-+-+++||... +...++..+
T Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~-------~~~~~---~~~~~~~~d~vI~iS~sG~t~~~~~~~~~a 119 (183)
T 2xhz_A 50 GKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPG-------EAAHG---DLGMVTPQDVVIAISNSGESSEITALIPVL 119 (183)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTT-------HHHHH---TSTTCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCch-------HHhhh---hhccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 47777777765544455666777788877665321 11111 111123446677788653 566677888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEec
Q 007795 142 RMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (589)
Q Consensus 142 R~RGYNILLAqP~nAS~~L~~aAd~vWlWe 171 (589)
+++|..|+++.... ..+|...|+.++...
T Consensus 120 k~~g~~vi~IT~~~-~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 120 KRLHVPLICITGRP-ESSMARAADVHLCVK 148 (183)
T ss_dssp HTTTCCEEEEESCT-TSHHHHHSSEEEECC
T ss_pred HHCCCCEEEEECCC-CChhHHhCCEEEEeC
Confidence 89999999887543 356888888776543
No 4
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=53.01 E-value=28 Score=30.78 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=56.8
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCc---chHHHHHHH
Q 007795 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (589)
Q Consensus 65 GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGDr---DFS~aL~~L 141 (589)
.+|.|.+.|....+-..+...|...|+....+... .+..-.+-+-+++||... +...++..+
T Consensus 41 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~---------------~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a 105 (180)
T 1jeo_A 41 KKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGET---------------TTPSYEKDDLLILISGSGRTESVLTVAKKA 105 (180)
T ss_dssp SSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTST---------------TCCCCCTTCEEEEEESSSCCHHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCC---------------ccccCCCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 45666666654444445666677788766655321 011123456678888654 566677888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEec
Q 007795 142 RMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (589)
Q Consensus 142 R~RGYNILLAqP~nAS~~L~~aAd~vWlWe 171 (589)
+.+|-.|+++.....+ |...|+.++.-.
T Consensus 106 k~~g~~vi~IT~~~~s--l~~~ad~~l~~~ 133 (180)
T 1jeo_A 106 KNINNNIIAIVCECGN--VVEFADLTIPLE 133 (180)
T ss_dssp HTTCSCEEEEESSCCG--GGGGCSEEEECC
T ss_pred HHCCCcEEEEeCCCCh--HHHhCCEEEEeC
Confidence 8999999988765444 888888776543
No 5
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=47.62 E-value=57 Score=31.55 Aligned_cols=90 Identities=26% Similarity=0.384 Sum_probs=57.3
Q ss_pred HHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeC--Cc-c-
Q 007795 58 LVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISG--DR-D- 133 (589)
Q Consensus 58 L~klGY~GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISG--Dr-D- 133 (589)
|.++|+.-. .+.||...++.+.++.+.+.|+.+++.|. .||..|-.+.+. +|.+.. +..|+++-+ .| |
T Consensus 37 l~~~g~~Pd---~ivGD~DSi~~~~~~~~~~~~~~i~~~p~-eKD~TD~e~Al~---~a~~~g-~~~I~i~Ga~GGR~DH 108 (223)
T 3k94_A 37 LLEAGFRPV---RAFGDFDSLPAEDVVKLQQAFPDLDVWPA-EKDKTDMEIALD---WAVEQT-ARCIRLFGATGGRLDH 108 (223)
T ss_dssp HHHHTCCCS---EEESCGGGSCHHHHHHHHHHCTTCCEECC-BTTBCHHHHHHH---HHHTTC-CSEEEEESCSSSSHHH
T ss_pred HHHcCCCCC---EEEeCcccCCHHHHHHHHhcCCeEEECCC-cCCCCHHHHHHH---HHHHcC-CCEEEEEcCCCCchhH
Confidence 445677543 35699999999999999999999999986 588888765544 454443 345555432 22 1
Q ss_pred hHHHHHHH-hhcCCeEEEeccCC
Q 007795 134 FSNALHQL-RMRRYNILLAQPHK 155 (589)
Q Consensus 134 FS~aL~~L-R~RGYNILLAqP~n 155 (589)
+...|+.| +..+.+|.|+...+
T Consensus 109 ~lani~lL~~~~~~~i~lid~~~ 131 (223)
T 3k94_A 109 LFGNVELLLKYADRPIEIVDRQN 131 (223)
T ss_dssp HHHHHHHHHHTTTSCEEEEETTE
T ss_pred HHHHHHHHHhccCCeEEEEcCCe
Confidence 33333333 34677787775443
No 6
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=45.90 E-value=15 Score=26.80 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHcCccchhhhhhhhhhHHHHHHHHhhhhh
Q 007795 498 YPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLP 538 (589)
Q Consensus 498 ~pk~~~d~i~~fl~s~~g~s~i~~s~~ry~aa~~lk~~cl~ 538 (589)
-||.+|++|---+.+ |+-.|-=.-|+.+|+.|=|
T Consensus 3 ipkkiweticpt~~~-------~akkc~g~iat~ik~~c~k 36 (37)
T 1eci_A 3 IPKKIWETVCPTVEP-------WAKKCSGDIATYIKRECGK 36 (37)
T ss_dssp CCHHHHHHHHHHHHH-------HHHTBCHHHHHHHHHHHHC
T ss_pred chHHHHHHhCcchHH-------HHHHccchHHHHHHHHhcc
Confidence 589999999766543 7778888999999999954
No 7
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=42.05 E-value=41 Score=32.44 Aligned_cols=92 Identities=21% Similarity=0.223 Sum_probs=56.6
Q ss_pred HHHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCC--c-
Q 007795 56 SALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD--R- 132 (589)
Q Consensus 56 sAL~klGY~GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGD--r- 132 (589)
..|.++|+.-. -+.||...++.+.++.+.+.|+.++..|. .||..|-.+.+. +|..+.+...|+++-+- |
T Consensus 34 ~~l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~~~~~~~-eKD~TD~e~Al~---~~~~~~~~~~I~i~Ga~GgRl 106 (222)
T 3mel_A 34 LHLLEADLPLQ---LAVGDFDSLSREEYHFVQETTETLIQAPA-EKDDTDTQLALQ---EALQRFPQAEMTIIGATGGRI 106 (222)
T ss_dssp HHHHTTTCCCC---EEEECCTTSCTTHHHHHHHHCSSEEECCS-SCSSCHHHHHHH---HHHHHCTTSEEEEECCCSSCH
T ss_pred HHHHHCCCCCC---EEEeCcccCCHHHHHHHHhcCCcEEECCc-cCCCCHHHHHHH---HHHHhCCCceEEEEccCCCCH
Confidence 34556777543 35799999999999999999999988776 488888655543 44443333455555432 2
Q ss_pred c-hHHHHHH-----HhhcCCeEEEeccC
Q 007795 133 D-FSNALHQ-----LRMRRYNILLAQPH 154 (589)
Q Consensus 133 D-FS~aL~~-----LR~RGYNILLAqP~ 154 (589)
| +..-|+. ++..+.+|.|+...
T Consensus 107 DH~lani~lL~~~~~~~~~~~i~lid~~ 134 (222)
T 3mel_A 107 DHLLANLWLPFEPRFQGVLRQIRLCDRQ 134 (222)
T ss_dssp HHHHHHHTGGGSHHHHTTGGGEEEECSS
T ss_pred HHHHHHHHHHHhhHHhccCceEEEEeCC
Confidence 1 2222222 33456677777543
No 8
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=40.36 E-value=68 Score=28.46 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=55.1
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCc---chHHHHHHH
Q 007795 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (589)
Q Consensus 65 GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGDr---DFS~aL~~L 141 (589)
.+|.|.+.|....+-..+...|...|+....+... + +..-.+-+-+++||... +...++..+
T Consensus 38 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~-----------~----~~~~~~~d~vI~iS~sG~t~~~~~~~~~a 102 (186)
T 1m3s_A 38 HQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEI-----------L----TPPLAEGDLVIIGSGSGETKSLIHTAAKA 102 (186)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTST-----------T----CCCCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCcc-----------c----ccCCCCCCEEEEEcCCCCcHHHHHHHHHH
Confidence 35555555554334445556677788766655221 0 11122345677788654 456677888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEe
Q 007795 142 RMRRYNILLAQPHKASAPLVAAAKSVWLW 170 (589)
Q Consensus 142 R~RGYNILLAqP~nAS~~L~~aAd~vWlW 170 (589)
+.+|-.|+++..... .+|...|+.++.-
T Consensus 103 k~~g~~vi~IT~~~~-s~l~~~ad~~l~~ 130 (186)
T 1m3s_A 103 KSLHGIVAALTINPE-SSIGKQADLIIRM 130 (186)
T ss_dssp HHTTCEEEEEESCTT-SHHHHHCSEEEEC
T ss_pred HHCCCEEEEEECCCC-CchHHhCCEEEEe
Confidence 899999998875543 4678888866653
No 9
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=39.41 E-value=97 Score=30.35 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=51.1
Q ss_pred EEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhh--hhcCCCCcEEEEEeC--Cc---chHHHHHHH--
Q 007795 71 AYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFW--AVDNPAPSNYLLISG--DR---DFSNALHQL-- 141 (589)
Q Consensus 71 AYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~W--AldNPpPANIMLISG--Dr---DFS~aL~~L-- 141 (589)
+.||...+..++++.+.+.|+.+++.| .||..|-.+.+..+.- .........|+++-+ .| -++. |+.|
T Consensus 72 ivGD~DSi~~~~~~~~~~~~~~i~~~p--eKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GGR~DH~Lan-i~lL~~ 148 (247)
T 3s4y_A 72 INGDFDSIRPEVREYYATKGCELISTP--DQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMAS-VNTLFQ 148 (247)
T ss_dssp EEECCSSSCHHHHHHHHHTTCEEEECC--CTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSSHHHHHHH-HHHHHH
T ss_pred EEcCCcCCCHHHHHHHHhcCCEEEECC--CCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCCchhHHHHH-HHHHHH
Confidence 569999999999999999999999865 6888887776654431 111223455555442 22 2333 3333
Q ss_pred -hh-cCCeEEEeccC
Q 007795 142 -RM-RRYNILLAQPH 154 (589)
Q Consensus 142 -R~-RGYNILLAqP~ 154 (589)
.. .+.+|.|+...
T Consensus 149 ~~~~~~~~i~lid~~ 163 (247)
T 3s4y_A 149 ATHITPFPIIIIQEE 163 (247)
T ss_dssp GGGTCSSCEEEEETT
T ss_pred HhhccCceEEEEeCC
Confidence 22 56778777543
No 10
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=38.57 E-value=1.7e+02 Score=26.06 Aligned_cols=104 Identities=12% Similarity=0.065 Sum_probs=56.8
Q ss_pred cCceEEEEEecCCCCChhHHHHhh------hcCCceeeccCCC-------ccchhhHHHHHHhhhhhcCCCCcEEEEEeC
Q 007795 64 CGPVSISAYGDTNRIPASVQHALS------STGIALNHVPAGV-------KDASDKKILVDMLFWAVDNPAPSNYLLISG 130 (589)
Q Consensus 64 ~GpVTIrAYGD~s~ip~~vr~aLs------SSGIsLihVPaG~-------KdAADkkMlVDML~WAldNPpPANIMLISG 130 (589)
.++|-+-+.|.....-..+...|. ..|+....+.... .+.....+..+.+. ..-.+-+-+++||.
T Consensus 41 a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~--~~~~~~DvvI~iS~ 118 (196)
T 2yva_A 41 GNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVR--ALGHAGDVLLAIST 118 (196)
T ss_dssp TCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHH--HHCCTTCEEEEECS
T ss_pred CCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHH--hcCCCCCEEEEEeC
Confidence 355666666654433334445565 6777666553210 01111122222221 11234566777885
Q ss_pred C---cchHHHHHHHhhcCCeEEEeccCCCChhHHhh---cCeEEEe
Q 007795 131 D---RDFSNALHQLRMRRYNILLAQPHKASAPLVAA---AKSVWLW 170 (589)
Q Consensus 131 D---rDFS~aL~~LR~RGYNILLAqP~nAS~~L~~a---Ad~vWlW 170 (589)
. .+...++..++++|-.|+.+.... ..+|... |+.++.-
T Consensus 119 SG~t~~~i~~~~~ak~~g~~vI~IT~~~-~s~la~~~~~ad~~l~~ 163 (196)
T 2yva_A 119 RGNSRDIVKAVEAAVTRDMTIVALTGYD-GGELAGLLGPQDVEIRI 163 (196)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEECTT-CHHHHTTCCTTSEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCC-CchhhhcccCCCEEEEe
Confidence 4 356778888899999999887443 3557666 7765543
No 11
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=38.02 E-value=65 Score=29.46 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=56.0
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCc---chHHHHHHH
Q 007795 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (589)
Q Consensus 65 GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGDr---DFS~aL~~L 141 (589)
++|.|.+.|....+-..+...|...|+.+..+... .+..-.+-+-+++||... +...++..+
T Consensus 48 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~---------------~~~~~~~~DvvI~iS~SG~t~~~i~~~~~a 112 (200)
T 1vim_A 48 RSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGET---------------VTPRITDQDVLVGISGSGETTSVVNISKKA 112 (200)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTST---------------TCCCCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeCCc---------------cccCCCCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 45666555554444445666677788776665211 011122446677788643 566778888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEE
Q 007795 142 RMRRYNILLAQPHKASAPLVAAAKSVWL 169 (589)
Q Consensus 142 R~RGYNILLAqP~nAS~~L~~aAd~vWl 169 (589)
+++|-.|+++.... ..+|...|+.++.
T Consensus 113 k~~g~~vI~IT~~~-~s~La~~ad~~l~ 139 (200)
T 1vim_A 113 KDIGSKLVAVTGKR-DSSLAKMADVVMV 139 (200)
T ss_dssp HHHTCEEEEEESCT-TSHHHHHCSEEEE
T ss_pred HHCCCeEEEEECCC-CChHHHhCCEEEE
Confidence 89999999887543 3468888887765
No 12
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=37.18 E-value=56 Score=29.54 Aligned_cols=95 Identities=9% Similarity=0.129 Sum_probs=59.0
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhh-hcCCCCcEEEEEeCCc---chHHHHHH
Q 007795 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWA-VDNPAPSNYLLISGDR---DFSNALHQ 140 (589)
Q Consensus 65 GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WA-ldNPpPANIMLISGDr---DFS~aL~~ 140 (589)
++|.|.+.|.....-..+...|...|+....+.. . +++... ..-.+-+-+++||... +...++..
T Consensus 46 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~-------~----~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ 114 (201)
T 3fxa_A 46 GKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTP-------S----DAVHGTLGVLQKEDILILISKGGNTGELLNLIPA 114 (201)
T ss_dssp SCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCH-------H----HHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHH
T ss_pred CcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCc-------h----HHHhhhhhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 4677777766544445566667778887776531 1 111111 1123346677787653 45667788
Q ss_pred HhhcCCeEEEeccCCCChhHHhhcCeEEEec
Q 007795 141 LRMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (589)
Q Consensus 141 LR~RGYNILLAqP~nAS~~L~~aAd~vWlWe 171 (589)
++++|-.|+++..... .+|...|+.++...
T Consensus 115 ak~~g~~vi~IT~~~~-s~l~~~ad~~l~~~ 144 (201)
T 3fxa_A 115 CKTKGSTLIGVTENPD-SVIAKEADIFFPVS 144 (201)
T ss_dssp HHHHTCEEEEEESCTT-SHHHHHCSEEEECC
T ss_pred HHHcCCeEEEEECCCC-ChhHHhCCEEEEcC
Confidence 8899999999875433 45778888777653
No 13
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=36.30 E-value=21 Score=34.35 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=21.1
Q ss_pred CCCCCCccchhhHHHHHHHHHhhhhccccC
Q 007795 403 QGRLTPSEYVQGLIGVILLALNTLKIERVV 432 (589)
Q Consensus 403 ~~~~~~s~~~q~li~~il~al~~lk~ek~~ 432 (589)
+|||+ .++.+++.|+..++.++.|++-
T Consensus 138 PGCPP---~Pe~il~~l~~l~~ki~~~~~~ 164 (181)
T 3i9v_6 138 PGCPP---RPEALIYAVMQLQKKVRGQAYN 164 (181)
T ss_dssp CCSSC---CHHHHHHHHHHHHHHHTTCCBC
T ss_pred eCCCC---CHHHHHHHHHHHHHHHhhcccc
Confidence 78888 4667788888888888888763
No 14
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=35.46 E-value=10 Score=34.85 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.9
Q ss_pred CCCCCCchHHHHHHHHHHhhHHHHhhcCC
Q 007795 446 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 474 (589)
Q Consensus 446 d~~~~~~dvkkal~~ai~~~~v~~~~~g~ 474 (589)
.+-+.+..|||||..||-.+.+|+..++.
T Consensus 17 ~~p~~d~~vRqAl~~aiDr~~i~~~~~~g 45 (229)
T 3o6p_A 17 KSPFRNANLRKAISYSIDRKALVESILGD 45 (229)
T ss_dssp TCGGGCHHHHHHHHHTCCHHHHHHTTTCS
T ss_pred cccCCCHHHHHHHHHHhhHHHHHHHHHcC
Confidence 45577889999999999999999988654
No 15
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=34.68 E-value=2e+02 Score=26.79 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=58.2
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCC---cchHHHHHHH
Q 007795 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD---RDFSNALHQL 141 (589)
Q Consensus 65 GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGD---rDFS~aL~~L 141 (589)
++|.|.+.|....+-..+...|...|+....+.... ++.. .+..-.+-+-+++||.. .+...++..+
T Consensus 60 ~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~-------~~~~---~~~~~~~~DlvI~iS~SG~t~~~i~~~~~a 129 (220)
T 3etn_A 60 GKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSE-------AQHG---DLGILQENDLLLLISNSGKTREIVELTQLA 129 (220)
T ss_dssp CCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTG-------GGBT---GGGGCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHH-------HHHh---hhccCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456666666554444456666778888776664321 1100 11112234667777754 3566778888
Q ss_pred hh--cCCeEEEeccCCCChhHHhhcCeEEEe
Q 007795 142 RM--RRYNILLAQPHKASAPLVAAAKSVWLW 170 (589)
Q Consensus 142 R~--RGYNILLAqP~nAS~~L~~aAd~vWlW 170 (589)
++ +|-.|+++..... .+|...|+.++..
T Consensus 130 k~~~~Ga~vI~IT~~~~-s~La~~aD~~l~~ 159 (220)
T 3etn_A 130 HNLNPGLKFIVITGNPD-SPLASESDVCLST 159 (220)
T ss_dssp HHHCTTCEEEEEESCTT-SHHHHHSSEEEEC
T ss_pred HhcCCCCeEEEEECCCC-ChhHHhCCEEEEc
Confidence 99 9999998875433 4678888877664
No 16
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=34.32 E-value=1.1e+02 Score=27.41 Aligned_cols=49 Identities=10% Similarity=0.035 Sum_probs=35.7
Q ss_pred CCcEEEEEeCC---cchHHHHHHHhhcCCeEEEeccCCCChhHHhh---cCeEEEe
Q 007795 121 APSNYLLISGD---RDFSNALHQLRMRRYNILLAQPHKASAPLVAA---AKSVWLW 170 (589)
Q Consensus 121 pPANIMLISGD---rDFS~aL~~LR~RGYNILLAqP~nAS~~L~~a---Ad~vWlW 170 (589)
+-+-+++||.. ++...++..++++|-.|+++... ...+|... |+.++.-
T Consensus 113 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~-~~s~La~~~~~ad~~l~~ 167 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGR-DGGGMASLLLPEDVEIRV 167 (199)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHCCTTCEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECC-CCCcHHhccccCCEEEEe
Confidence 45667778854 35677888889999999988744 34678888 8877654
No 17
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=32.65 E-value=19 Score=33.73 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCCCCCchHHHHHHHHHHhhHHHHhhcCC
Q 007795 446 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 474 (589)
Q Consensus 446 d~~~~~~dvkkal~~ai~~~~v~~~~~g~ 474 (589)
.+-+.+..|||||..||-++.+|+..++.
T Consensus 14 ~~p~~d~~vRqAl~~aiDr~~iv~~~~~g 42 (258)
T 3lvu_A 14 RAPFDDWRLREALLLAFNFEFINDTVTGG 42 (258)
T ss_dssp STTTTSHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred CCcccCHHHHHHHHHhcCHHHHHHHHhcc
Confidence 45678899999999999999999998654
No 18
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=31.72 E-value=39 Score=33.25 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=26.8
Q ss_pred CCcceeecCCCcceeeec-cCCCCCCCcHH---HHHHHHHHHcCccchhhhh
Q 007795 473 GALPLYVPKNEKLWNCEN-LYGNPNQYPKE---VWDRIQKFLTSSSGRSAIM 520 (589)
Q Consensus 473 g~~~l~~~k~e~lwkcvn-~~~~~~~~pk~---~~d~i~~fl~s~~g~s~i~ 520 (589)
.+|.+++-.++.|-+--- +-.||..||.. .=...-+||.|+.|..+|.
T Consensus 187 ~~l~i~~~gd~~l~n~y~~~~v~p~~~~~~~~~~a~~f~~~l~s~~~q~~i~ 238 (242)
T 3kn3_A 187 PPMVIVLEGDNTLKNFYSIMAVNPKRCEKADYKGAKQFIDWIVSEKMQAEIA 238 (242)
T ss_dssp CSCEEEECCCGGGCCEEEEEEECTTTCTTSCHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCeEEEEcCCcceEeeeEEEEECcccCCccCHHHHHHHHHHHcCHHHHHHHH
Confidence 346666666666666554 55666656532 2233445566666665553
No 19
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=30.66 E-value=1.4e+02 Score=28.71 Aligned_cols=89 Identities=22% Similarity=0.345 Sum_probs=56.1
Q ss_pred HHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeC--Cc---
Q 007795 58 LVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISG--DR--- 132 (589)
Q Consensus 58 L~klGY~GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISG--Dr--- 132 (589)
|.++|+.-. -+.||...++.+.++.+.+.|+.+++.|. .||..|-.+.+. +|.+.. +..|+++-+ .|
T Consensus 38 l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~i~~~p~-eKD~TD~e~Al~---~a~~~g-~~~I~i~Ga~GgR~DH 109 (222)
T 3lm8_A 38 LLDAGIIPV---EAFGDFDSITEQERRRIEKAAPALHVYQA-EKDQTDLDLALD---WALEKQ-PDIIQIFGITGGRADH 109 (222)
T ss_dssp HHHHTCCCS---EEESCSTTSCHHHHHHHHHHCTTCEEECC-CSSSCHHHHHHH---HHHHHC-CSEEEEESCCCSCHHH
T ss_pred HHHcCCCCc---EEEeCcccCCHHHHHHHHhcCCeEEEeCC-CCCCCHHHHHHH---HHHHcC-CCEEEEEcCCCCchhH
Confidence 445677543 35799999999999999999999999986 578788766554 444432 345555432 22
Q ss_pred chHHHHHHH---hhcCCeEEEeccCC
Q 007795 133 DFSNALHQL---RMRRYNILLAQPHK 155 (589)
Q Consensus 133 DFS~aL~~L---R~RGYNILLAqP~n 155 (589)
-++. |+.| ...+.++.|+...+
T Consensus 110 ~lan-i~ll~~~~~~~~~i~lid~~~ 134 (222)
T 3lm8_A 110 FLGN-IQLLYKGVKTNIKIRLIDKQN 134 (222)
T ss_dssp HHHH-HHHHHHHHHTTCEEEEEETTE
T ss_pred HHHH-HHHHHHHHhcCCcEEEEeCCe
Confidence 2332 3333 23467777775443
No 20
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=29.47 E-value=31 Score=33.61 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhHHH---------HhhcCCcceeecCCCcceeeec-cCCCCCCCcH---HHHHHHHHHHcCccchhhhh
Q 007795 454 VRKALNCAIEQHMVI---------KRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPK---EVWDRIQKFLTSSSGRSAIM 520 (589)
Q Consensus 454 vkkal~~ai~~~~v~---------~~~~g~~~l~~~k~e~lwkcvn-~~~~~~~~pk---~~~d~i~~fl~s~~g~s~i~ 520 (589)
.-.+|..|.|.++.+ .++-++|.+++-+++.|.+--- +-.||..||. |.=...-+||.|+.|...|.
T Consensus 154 m~~~l~~a~~~~~y~l~dr~t~l~~~~~~~l~i~~~gd~~l~n~y~v~~v~p~~~~~~~~~~a~~f~~wl~s~~gQ~~i~ 233 (237)
T 3muq_A 154 MGPTLNMASEMQGYTMSDRGTWLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYPTINYQGAKAFSDWLVNPRGQELIN 233 (237)
T ss_dssp HHHHHHHHHHTTCBEEEEHHHHHHHGGGCSCEEEECCCGGGEEEEEEEEECTTTCTTSCHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEechHHhhccccCCeEEEEcCCCceeeeeEEEEECcccCCccCHHHHHHHHHHHcCHHHHHHHH
Confidence 445666666665432 1333467777888888877666 6677776773 34445566777777776664
No 21
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=28.97 E-value=93 Score=33.26 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=59.4
Q ss_pred CceEEEEEecCCCCCCCCChhhhHHHHHHHHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccch--h
Q 007795 28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDAS--D 105 (589)
Q Consensus 28 AkTaVFWDIENCPVP~G~da~~V~~NIrsAL~klGY~GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAA--D 105 (589)
+.--++||++.=. ...+....+..|...+ .+..|++..| ..++|..+.|-++-+|.+.+..+ |
T Consensus 57 ~~eV~L~Di~~e~------~~~~~~~~~~~l~~~~--~~~~I~~t~D-------~~eal~~AD~VViaag~~~~~g~~rd 121 (472)
T 1u8x_X 57 IRKLKLYDNDKER------QDRIAGACDVFIREKA--PDIEFAATTD-------PEEAFTDVDFVMAHIRVGKYAMRALD 121 (472)
T ss_dssp EEEEEEECSCHHH------HHHHHHHHHHHHHHHC--TTSEEEEESC-------HHHHHSSCSEEEECCCTTHHHHHHHH
T ss_pred CCEEEEEeCCHHH------HHHHHHHHHHHhccCC--CCCEEEEECC-------HHHHHcCCCEEEEcCCCccccccchh
Confidence 4567899996411 1112211122222222 3567777644 33567666766666666544322 1
Q ss_pred h--------------------------HHHHHHhhhhhcCCCCcEEEEEeCCcchH-HHHHHHhhcCCeEEEec
Q 007795 106 K--------------------------KILVDMLFWAVDNPAPSNYLLISGDRDFS-NALHQLRMRRYNILLAQ 152 (589)
Q Consensus 106 k--------------------------kMlVDML~WAldNPpPANIMLISGDrDFS-~aL~~LR~RGYNILLAq 152 (589)
. .++.|+..-....-|-+-|+.+|..-|.. .++.++. -..+||..+
T Consensus 122 ~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~-p~~rViG~c 194 (472)
T 1u8x_X 122 EQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR-PNSKILNIC 194 (472)
T ss_dssp HHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHS-TTCCEEECC
T ss_pred hhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC-CCCCEEEeC
Confidence 1 35666666555544556677777776764 5666665 344788876
No 22
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=27.14 E-value=2.3e+02 Score=26.49 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=31.4
Q ss_pred cchHHHHHHHhhcCCeEE-Eec-cCCCChhHHhhcCeEEEeccc
Q 007795 132 RDFSNALHQLRMRRYNIL-LAQ-PHKASAPLVAAAKSVWLWTSL 173 (589)
Q Consensus 132 rDFS~aL~~LR~RGYNIL-LAq-P~nAS~~L~~aAd~vWlWeSL 173 (589)
.+|+..|..++..|-+|. ++. +..-++.+...|+..|....|
T Consensus 81 ~~fA~~l~~~~~~G~~i~FvIGGa~Gl~~~v~~rAd~~lSlS~m 124 (163)
T 1o6d_A 81 EEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKM 124 (163)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGGGCSEEEECCSS
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHHhhCceEEccCC
Confidence 479999999988776674 444 566788888888877776554
No 23
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=27.06 E-value=1.8e+02 Score=24.95 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=40.4
Q ss_pred HHHHHHHhcCccCceE-EEEEe--cCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEe
Q 007795 53 NISSALVKMNYCGPVS-ISAYG--DTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLIS 129 (589)
Q Consensus 53 NIrsAL~klGY~GpVT-IrAYG--D~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLIS 129 (589)
..+..|++.||.-... +.+.+ |..-.-..+.+.|...||.+.++-. .. ......++|.
T Consensus 57 ~a~~~L~~~G~~v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~------------------~~-~~~~~~~~i~ 117 (144)
T 2f06_A 57 KAYKALKDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYS------------------FA-NNNVANVVIR 117 (144)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEE------------------EE-ETTEEEEEEE
T ss_pred HHHHHHHHcCCeEeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEE------------------Ec-cCCcEEEEEE
Confidence 3455566666643221 22221 2222334566677777777744210 00 0011233333
Q ss_pred CCcchHHHHHHHhhcCCeEE
Q 007795 130 GDRDFSNALHQLRMRRYNIL 149 (589)
Q Consensus 130 GDrDFS~aL~~LR~RGYNIL 149 (589)
- .|.-.++..|+..||+|+
T Consensus 118 ~-~d~~~A~~~L~~~g~~v~ 136 (144)
T 2f06_A 118 P-SNMDKCIEVLKEKKVDLL 136 (144)
T ss_dssp E-SCHHHHHHHHHHTTCEEE
T ss_pred e-CCHHHHHHHHHHcCCEEe
Confidence 3 478889999999999995
No 24
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=26.26 E-value=24 Score=32.98 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCCCchHHHHHHHHHHhhHHHHhhcCC
Q 007795 447 PKHRNTDVRKALNCAIEQHMVIKRSLGA 474 (589)
Q Consensus 447 ~~~~~~dvkkal~~ai~~~~v~~~~~g~ 474 (589)
+-+.+..|||||..||-.+.+|+..++.
T Consensus 15 ~p~~d~~vRqAi~~aiDr~~i~~~v~~g 42 (259)
T 3pam_A 15 TLFKDKRVRQALSILFDFEWVNHHLFNN 42 (259)
T ss_dssp GGGCSHHHHHHHHHHCCHHHHHHHTSCS
T ss_pred ccccCHHHHHHHHHHhhHHHHHHHHhcc
Confidence 4567889999999999999999998654
No 25
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=25.53 E-value=2.4e+02 Score=26.80 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=56.6
Q ss_pred CChhhhHHHHHHHHHhcCccCceEEEEEecCCC---CChhHHHHhhhcCCceee---ccCCCccchhhHHHHHHhhhhhc
Q 007795 45 CDPHTIAQNISSALVKMNYCGPVSISAYGDTNR---IPASVQHALSSTGIALNH---VPAGVKDASDKKILVDMLFWAVD 118 (589)
Q Consensus 45 ~da~~V~~NIrsAL~klGY~GpVTIrAYGD~s~---ip~~vr~aLsSSGIsLih---VPaG~KdAADkkMlVDML~WAld 118 (589)
.+.......+-+.|.++|.+ +|.+- |.|... .-..++++|...|+++.. ++.+..+. ...+..+..
T Consensus 141 ~~~~~~~~~~~~~l~~~g~~-~ia~i-~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~--~~~~~~~~~---- 212 (386)
T 3sg0_A 141 PNDDIMAEAIGKYIAKTGAK-KVGYI-GFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASV--TGQVLKIIA---- 212 (386)
T ss_dssp CCHHHHHHHHHHHHHHTTCC-EEEEE-EESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCC--HHHHHHHHH----
T ss_pred CCcHHHHHHHHHHHHhcCCC-EEEEE-ecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcH--HHHHHHHHh----
Confidence 33445556666777776654 44432 443321 224567788899998763 23343332 222333322
Q ss_pred CCCCcEEEEEeCCcchHHHHHHHhhcCCeEEEec
Q 007795 119 NPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ 152 (589)
Q Consensus 119 NPpPANIMLISGDrDFS~aL~~LR~RGYNILLAq 152 (589)
..|.-|++...+.+...++..+++.|+++-++.
T Consensus 213 -~~~dav~~~~~~~~a~~~~~~~~~~g~~~~~~~ 245 (386)
T 3sg0_A 213 -TKPDAVFIASAGTPAVLPQKALRERGFKGAIYQ 245 (386)
T ss_dssp -TCCSEEEEECCSGGGHHHHHHHHHTTCCSEEEC
T ss_pred -cCCCEEEEecCcchHHHHHHHHHHcCCCCcEEe
Confidence 345555555444778889999999998865443
No 26
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
Probab=23.75 E-value=51 Score=31.97 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=45.8
Q ss_pred HHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEe--CCc-c
Q 007795 57 ALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLIS--GDR-D 133 (589)
Q Consensus 57 AL~klGY~GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLIS--GDr-D 133 (589)
.|.++||.-. -+.||...++.+.++.+.+.|+.+...|. .||..|..+.+ .+|....+...|+++- |.| |
T Consensus 36 ~l~~~g~~Pd---~ivGDfDSi~~e~~~~~~~~~~~~~~~~~-~KD~TD~e~Al---~~a~~~~~~~~I~i~Ga~GgR~D 108 (227)
T 3cq9_A 36 RLVKRGIQPV---MVVGDFDSIDAAELQTVKDALVGAIVVKP-DQDHTDTQLAI---KSIFEQLQPDEVHLYGATGGRLD 108 (227)
T ss_dssp HHHHTTCCCS---EEESCC---------CHHHHHHTSEEECC-CSSSCHHHHHH---HHHHHHTCCSEEEEESCSSSCHH
T ss_pred HHHHcCCCCC---EEEeCCcCCCHHHHHHHHhcCceEEECCC-CCCCCHHHHHH---HHHHHhCCCceEEEEcCCCCchh
Confidence 4556787532 35799999888888888888988887776 47777765554 3444444444554443 222 1
Q ss_pred --hHHH--HHHHhhcCC--eEEEecc
Q 007795 134 --FSNA--LHQLRMRRY--NILLAQP 153 (589)
Q Consensus 134 --FS~a--L~~LR~RGY--NILLAqP 153 (589)
++.+ |.+++.+++ +|.|+..
T Consensus 109 H~laNi~lL~~~~~~~~~~~i~lid~ 134 (227)
T 3cq9_A 109 HLLANMWLVLDPVFRQWAPQIKLIDK 134 (227)
T ss_dssp HHHHHHSGGGSHHHHTTGGGEEEECS
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 3322 222234666 7777653
No 27
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.68 E-value=2.4e+02 Score=25.09 Aligned_cols=69 Identities=19% Similarity=0.311 Sum_probs=39.9
Q ss_pred hHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCcchHHHHHHH-hhcCCeEEEeccCCC
Q 007795 81 SVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQL-RMRRYNILLAQPHKA 156 (589)
Q Consensus 81 ~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGDrDFS~aL~~L-R~RGYNILLAqP~nA 156 (589)
.+..+....|..+.+|.. +| .+-..|-..|. ...-..|++||.|..+...+-.| ...||.|+|.-....
T Consensus 17 kikkevenqgyqvrdvnd-----sd-elkkemkklae-eknfekiliisndkqllkemlelisklgykvflllqdqd 86 (134)
T 2lci_A 17 KIKKEVENQGYQVRDVND-----SD-ELKKEMKKLAE-EKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQD 86 (134)
T ss_dssp HHHHHTTTTTCEEEEECS-----HH-HHHHHHHHHHH-CCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSC
T ss_pred HHHHHHHccCeeeeecCc-----hH-HHHHHHHHHHh-hcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCc
Confidence 345556666666666632 11 23344555553 23456789999998766654444 446999987654433
No 28
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=22.34 E-value=1.7e+02 Score=28.05 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=45.5
Q ss_pred HHHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEE
Q 007795 56 SALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLI 128 (589)
Q Consensus 56 sAL~klGY~GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLI 128 (589)
..|.++|+.-. -+.||...+..+.++.+.+.|+.+++.|. .||..|-.+.+. +|..+-....|+++
T Consensus 30 ~~l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~i~~~~~-eKD~TD~e~Al~---~a~~~~~~~~I~i~ 95 (218)
T 3ihk_A 30 SFLLKNQLPLD---LAIGDFDSVSAEEFKQIKAKAKKLVMAPA-EKNDTDTELALK---TIFDCFGRVEIIVF 95 (218)
T ss_dssp HHHHHTTCCCS---EEEECCTTSCHHHHHHHHTTCSSEEECCS-SCSSCHHHHHHH---HHHHHTSSCEEEEE
T ss_pred HHHHHcCCCCC---EEEeCcccCCHHHHHHHHhcCCeEEECCC-CCCCCHHHHHHH---HHHHhCCCCEEEEE
Confidence 34556777543 35799999999999999999999988776 578788666544 44443233455554
No 29
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=22.01 E-value=3.2e+02 Score=28.40 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=25.8
Q ss_pred ChhhhHHHHHHHHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeec
Q 007795 46 DPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHV 96 (589)
Q Consensus 46 da~~V~~NIrsAL~klGY~GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihV 96 (589)
+...+..-++.+.+..+..+.+.|+...+-..+..+.++.|...|+.-+++
T Consensus 119 ~~~~l~~ll~~i~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~risl 169 (457)
T 1olt_A 119 NKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSM 169 (457)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEE
Confidence 333444433333333222222345555555556667777777777655554
No 30
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=21.03 E-value=3.3e+02 Score=25.85 Aligned_cols=88 Identities=25% Similarity=0.243 Sum_probs=52.6
Q ss_pred HHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeC--Cc--
Q 007795 57 ALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISG--DR-- 132 (589)
Q Consensus 57 AL~klGY~GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISG--Dr-- 132 (589)
.|.++|+.-. -+.||...+..+.++.+.+.| .++++|. .||..|-.+.+. +|.+. ....|+++-+ -|
T Consensus 34 ~l~~~g~~Pd---~ivGD~DSi~~~~~~~~~~~~-~i~~~p~-eKD~TD~e~Al~---~a~~~-~~~~I~i~Ga~GgR~D 104 (212)
T 3l8m_A 34 ILLESGITPQ---FAVGDFDSISDSERNFIQQQI-EINPYNS-EKDDTDLALGID---QAVKR-GYRNIDVYGATGGRLD 104 (212)
T ss_dssp HHHHTTCCCS---EEESCCCCSCHHHHHHHHHHT-BCCCCC----CBCHHHHHHH---HHHHT-TCCEEEEESCSSSCHH
T ss_pred HHHHCCCCcc---EEEeCcccCCHHHHHHHhcCC-cEEEECC-cCCCCHHHHHHH---HHHHC-CCCEEEEEcCCCCchh
Confidence 3445677543 357999999999999999989 8888876 578888766544 45444 2344444332 22
Q ss_pred chHHHHHHH-----hhcCCeEEEecc
Q 007795 133 DFSNALHQL-----RMRRYNILLAQP 153 (589)
Q Consensus 133 DFS~aL~~L-----R~RGYNILLAqP 153 (589)
.+...|+.| ...+.+|.|+..
T Consensus 105 H~lani~ll~~~~~~~~~~~i~lid~ 130 (212)
T 3l8m_A 105 HFMGALQILEKPEYAKMNINIKLIDD 130 (212)
T ss_dssp HHHHHHHHHTCHHHHTTTCEEEEECS
T ss_pred HHHHHHHHHHhhhhhccCceEEEEeC
Confidence 133333433 234667777753
No 31
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=20.88 E-value=2e+02 Score=26.94 Aligned_cols=99 Identities=13% Similarity=0.061 Sum_probs=57.7
Q ss_pred CChhhhHHHHHHHHHhcCccCceEEEEEecCCC---CChhHHHHhhhcCCceee---ccCCCccchhhHHHHHHhhhhhc
Q 007795 45 CDPHTIAQNISSALVKMNYCGPVSISAYGDTNR---IPASVQHALSSTGIALNH---VPAGVKDASDKKILVDMLFWAVD 118 (589)
Q Consensus 45 ~da~~V~~NIrsAL~klGY~GpVTIrAYGD~s~---ip~~vr~aLsSSGIsLih---VPaG~KdAADkkMlVDML~WAld 118 (589)
.+....+..+-..|.++|.+ +|.+- |.+... .-..++++|...|+++.. ++.+..+. ...+..+..
T Consensus 117 ~~~~~~~~~~~~~l~~~g~~-~ia~i-~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~--~~~~~~l~~---- 188 (362)
T 3snr_A 117 QPIPIMGKVLYEHMKKNNVK-TVGYI-GYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSV--AGQALKLVA---- 188 (362)
T ss_dssp CCHHHHHHHHHHHHHHTTCC-EEEEE-EESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCC--HHHHHHHHH----
T ss_pred CChHHHHHHHHHHHHhcCCC-EEEEE-ecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCH--HHHHHHHHh----
Confidence 33445556666777777654 44432 443221 224577889999998764 33333332 122333322
Q ss_pred CCCCcEEEEEeCCcchHHHHHHHhhcCCeEEEec
Q 007795 119 NPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ 152 (589)
Q Consensus 119 NPpPANIMLISGDrDFS~aL~~LR~RGYNILLAq 152 (589)
..|.-|++.+.|.+...++..|++.|+++-++.
T Consensus 189 -~~~dav~~~~~~~~a~~~~~~~~~~g~~~p~i~ 221 (362)
T 3snr_A 189 -ANPDAILVGASGTAAALPQTTLRERGYNGLIYQ 221 (362)
T ss_dssp -HCCSEEEEECCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred -cCCCEEEEecCcchHHHHHHHHHHcCCCccEEe
Confidence 235666665557888889999999998875443
No 32
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=20.03 E-value=5.2e+02 Score=24.10 Aligned_cols=42 Identities=7% Similarity=0.173 Sum_probs=31.6
Q ss_pred cchHHHHHHHhhcC-CeEE-Eec-cCCCChhHHhhcCeEEEeccc
Q 007795 132 RDFSNALHQLRMRR-YNIL-LAQ-PHKASAPLVAAAKSVWLWTSL 173 (589)
Q Consensus 132 rDFS~aL~~LR~RG-YNIL-LAq-P~nAS~~L~~aAd~vWlWeSL 173 (589)
.+|+..|..++..| -+|. ++. +..-++.+...|+..|....|
T Consensus 86 ~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~~rA~~~lSlS~m 130 (167)
T 1to0_A 86 EELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFSKM 130 (167)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHHCSEEEESCSS
T ss_pred HHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHhhCcEEEccCC
Confidence 47999999999887 4664 444 566788899999887776554
Done!