Query 007795
Match_columns 589
No_of_seqs 140 out of 267
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 10:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007795.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007795hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kwga3 c.23.16.5 (A:394-590) 54.0 7.4 0.00054 34.6 5.3 38 26-63 3-46 (197)
2 d2d59a1 c.2.1.8 (A:4-142) Hypo 47.8 17 0.0012 30.5 6.4 102 52-162 10-115 (139)
3 d1o6da_ c.116.1.3 (A:) Hypothe 44.7 46 0.0033 27.8 8.8 42 132-173 79-122 (147)
4 d2f06a1 d.58.18.11 (A:71-141) 42.4 12 0.0009 28.2 4.1 50 80-149 14-63 (71)
5 d1jeoa_ c.80.1.3 (A:) Probable 32.2 50 0.0036 27.9 7.0 90 65-171 38-130 (177)
6 d1ns5a_ c.116.1.3 (A:) Hypothe 30.0 65 0.0047 26.9 7.3 42 132-173 82-125 (153)
7 d1z45a2 c.2.1.2 (A:11-357) Uri 21.0 40 0.0029 30.3 4.4 29 124-152 2-32 (347)
8 d1m3sa_ c.80.1.3 (A:) Hypothet 19.1 1.1E+02 0.0084 25.5 6.8 89 65-169 38-129 (186)
9 d1vima_ c.80.1.3 (A:) Hypothet 19.0 1.2E+02 0.0085 25.6 6.9 90 65-170 41-133 (192)
10 d1vsra_ c.52.1.15 (A:) Very sh 18.4 44 0.0032 28.5 3.8 67 449-519 58-125 (134)
No 1
>d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain {Thermus thermophilus [TaxId: 274]}
Probab=53.95 E-value=7.4 Score=34.63 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=30.7
Q ss_pred ccCceEEEEEecCC------CCCCCCChhhhHHHHHHHHHhcCc
Q 007795 26 VTAKTSVWWDIENC------QVPKNCDPHTIAQNISSALVKMNY 63 (589)
Q Consensus 26 a~AkTaVFWDIENC------PVP~G~da~~V~~NIrsAL~klGY 63 (589)
+.|+|+|.+|+|++ +...+++........-++|+++|+
T Consensus 3 ~~A~VAil~D~es~Wa~~~~~~~~~~~y~~~~~~~Y~al~~~gv 46 (197)
T d1kwga3 3 AQAPVALVFDYEAAWIYEVQPQGAEWSYLGLVYLFYSALRRLGL 46 (197)
T ss_dssp CCCSEEEECCHHHHHHHHHCCSSTTCCHHHHHHHHHHHHHTTTC
T ss_pred CcCcEEEEEehhHhhhhhccCCCCCcCHHHHHHHHHHHHHHcCC
Confidence 46789999999984 545677777788888899999887
No 2
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=47.85 E-value=17 Score=30.52 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCccCceEEEEEec---CCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCC-CCcEEEE
Q 007795 52 QNISSALVKMNYCGPVSISAYGD---TNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP-APSNYLL 127 (589)
Q Consensus 52 ~NIrsAL~klGY~GpVTIrAYGD---~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNP-pPANIML 127 (589)
..|++.|.+ +-+|-.+|- ..+....+.+.|...|..++-|....++.......-++ .+=| +++.+++
T Consensus 10 ~~i~~~L~~-----~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl----~dlp~~iD~v~i 80 (139)
T d2d59a1 10 EDIREILTR-----YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSV----LDIPDKIEVVDL 80 (139)
T ss_dssp HHHHHHHHH-----CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSG----GGCSSCCSEEEE
T ss_pred HHHHHHHhc-----CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccc----cccCccceEEEE
Confidence 457777865 336767773 34456668889999999887774323333322222222 1223 5666666
Q ss_pred EeCCcchHHHHHHHhhcCCeEEEeccCCCChhHHh
Q 007795 128 ISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVA 162 (589)
Q Consensus 128 ISGDrDFS~aL~~LR~RGYNILLAqP~nAS~~L~~ 162 (589)
+.....-..++..+...|...+.+++...++.+.+
T Consensus 81 ~vp~~~~~~~~~e~~~~g~k~v~~~~G~~~ee~~~ 115 (139)
T d2d59a1 81 FVKPKLTMEYVEQAIKKGAKVVWFQYNTYNREASK 115 (139)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEECTTCCCHHHHH
T ss_pred EeCHHHHHHHHHHHHHhCCCEEEEeccccCHHHHH
Confidence 66555555677888888999999998877765544
No 3
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=44.66 E-value=46 Score=27.84 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=32.2
Q ss_pred cchHHHHHHHhhcCCeEEEe-c-cCCCChhHHhhcCeEEEeccc
Q 007795 132 RDFSNALHQLRMRRYNILLA-Q-PHKASAPLVAAAKSVWLWTSL 173 (589)
Q Consensus 132 rDFS~aL~~LR~RGYNILLA-q-P~nAS~~L~~aAd~vWlWeSL 173 (589)
.+|+..|..++..|.+|.++ . +..-++.+...|+..|....|
T Consensus 79 ~~fA~~l~~~~~~g~~i~FiIGGa~Gl~~~~~~~a~~~lSls~m 122 (147)
T d1o6da_ 79 EEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKM 122 (147)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGGGCSEEEECCSS
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHhcCcEEeCCcC
Confidence 47999999998888888554 3 556778888889988776554
No 4
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=42.37 E-value=12 Score=28.20 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=35.6
Q ss_pred hhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCcchHHHHHHHhhcCCeEE
Q 007795 80 ASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNIL 149 (589)
Q Consensus 80 ~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGDrDFS~aL~~LR~RGYNIL 149 (589)
..+.+.|...||.+.++-. .+...-+.+++...|. -.+...|+..||.|+
T Consensus 14 ~~v~~~L~~~~InI~~~y~------------------~~~~~~~~~vl~vdd~--~~a~~~L~~~G~~vl 63 (71)
T d2f06a1 14 AKVLGFLSAEGVFIEYMYS------------------FANNNVANVVIRPSNM--DKCIEVLKEKKVDLL 63 (71)
T ss_dssp HHHHHHHHHTTCCEEEEEE------------------EEETTEEEEEEEESCH--HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCCEEEEEE------------------EcCCCcEEEEEEECCH--HHHHHHHHHCCCEEE
Confidence 4577889999999988621 1112234567777654 588999999999987
No 5
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=32.24 E-value=50 Score=27.87 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=55.6
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCc---chHHHHHHH
Q 007795 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (589)
Q Consensus 65 GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGDr---DFS~aL~~L 141 (589)
.+|-+.+.|....+-..+...|...|+...++.... +..-.+-+-+++||... +...++..+
T Consensus 38 ~~I~~~G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~---------------~~~~~~~Dl~I~iS~sG~t~~~i~~~~~a 102 (177)
T d1jeoa_ 38 KKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETT---------------TPSYEKDDLLILISGSGRTESVLTVAKKA 102 (177)
T ss_dssp SSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTT---------------CCCCCTTCEEEEEESSSCCHHHHHHHHHH
T ss_pred CeEEEEEccHHHHHHHHHHHHHHhcCCccccccccc---------------ccccCCCCeEEEeccccchHHHHHHHHHH
Confidence 345555555543333445566888898777753211 00112335678888654 556677888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEec
Q 007795 142 RMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (589)
Q Consensus 142 R~RGYNILLAqP~nAS~~L~~aAd~vWlWe 171 (589)
|++|..|+++... .+ +|...|+..+.+.
T Consensus 103 k~~g~~vI~IT~~-~~-~l~~~aD~~l~~~ 130 (177)
T d1jeoa_ 103 KNINNNIIAIVCE-CG-NVVEFADLTIPLE 130 (177)
T ss_dssp HTTCSCEEEEESS-CC-GGGGGCSEEEECC
T ss_pred HHcCCceeEEecC-CC-cHHHhcCceEEEe
Confidence 8999999998853 33 3667788776553
No 6
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=29.97 E-value=65 Score=26.87 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=31.7
Q ss_pred cchHHHHHHHhhcCCeEEEe-c-cCCCChhHHhhcCeEEEeccc
Q 007795 132 RDFSNALHQLRMRRYNILLA-Q-PHKASAPLVAAAKSVWLWTSL 173 (589)
Q Consensus 132 rDFS~aL~~LR~RGYNILLA-q-P~nAS~~L~~aAd~vWlWeSL 173 (589)
.+|+..|..++..|.+|.++ + +..-+..+...|+..|....|
T Consensus 82 ~~fA~~l~~~~~~g~~i~fiIGGa~G~~~~~~~~a~~~lsls~m 125 (153)
T d1ns5a_ 82 PQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSAL 125 (153)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECBTTBCCHHHHHHCSEEECCCSS
T ss_pred HHHHHHHHHHhhccCcEEEEEEcCCCCCHHHHHhhCcEEecccC
Confidence 47999999999888888554 3 555778899888887765443
No 7
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.00 E-value=40 Score=30.35 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=24.8
Q ss_pred EEEEEeCCcchH--HHHHHHhhcCCeEEEec
Q 007795 124 NYLLISGDRDFS--NALHQLRMRRYNILLAQ 152 (589)
Q Consensus 124 NIMLISGDrDFS--~aL~~LR~RGYNILLAq 152 (589)
.+|||||-..|. .++..|..+||+|+++.
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d 32 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVAD 32 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEE
Confidence 479999999995 57888999999998874
No 8
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}
Probab=19.10 E-value=1.1e+02 Score=25.50 Aligned_cols=89 Identities=10% Similarity=0.031 Sum_probs=54.3
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCc---chHHHHHHH
Q 007795 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (589)
Q Consensus 65 GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGDr---DFS~aL~~L 141 (589)
++|-+.+.|....+-..+...|.+.|+....+.. +.... -.+-+.+++||... +-..++..+
T Consensus 38 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-------------~~~~~--~~~~Dl~I~iS~sG~t~~~i~~~~~a 102 (186)
T d1m3sa_ 38 HQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGE-------------ILTPP--LAEGDLVIIGSGSGETKSLIHTAAKA 102 (186)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTS-------------TTCCC--CCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CeEEEEECcHHHHHHHHHHHHHHhccCCCCcCCh-------------hhccc--CCCCCEEEEecCccchhhhHHHHHHH
Confidence 4566656565433334455567788887665421 11100 12345677777543 456777888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEE
Q 007795 142 RMRRYNILLAQPHKASAPLVAAAKSVWL 169 (589)
Q Consensus 142 R~RGYNILLAqP~nAS~~L~~aAd~vWl 169 (589)
+.+|-.|+++.... ..+|...|+.++.
T Consensus 103 k~~g~~iI~IT~~~-~s~La~~ad~~i~ 129 (186)
T d1m3sa_ 103 KSLHGIVAALTINP-ESSIGKQADLIIR 129 (186)
T ss_dssp HHTTCEEEEEESCT-TSHHHHHCSEEEE
T ss_pred HHCCCCEEEEecCC-CchhhHhCCEEEE
Confidence 89999999887543 3458888887665
No 9
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=18.95 E-value=1.2e+02 Score=25.59 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=55.0
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHhhhhhcCCCCcEEEEEeCCc---chHHHHHHH
Q 007795 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (589)
Q Consensus 65 GpVTIrAYGD~s~ip~~vr~aLsSSGIsLihVPaG~KdAADkkMlVDML~WAldNPpPANIMLISGDr---DFS~aL~~L 141 (589)
++|-|.+.|....+-..+...|...|+....+.... +. .--+-+-+++||... +...++..+
T Consensus 41 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~--~~-------------~i~~~Dl~i~iS~sG~t~~~i~~~~~a 105 (192)
T d1vima_ 41 RSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETV--TP-------------RITDQDVLVGISGSGETTSVVNISKKA 105 (192)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTT--CC-------------CCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CcEEEEecCcchhhhhhhhhhhcccccccccccccc--cc-------------cccccccceeccccccchhhHHHHHHH
Confidence 456666666543344455566778888776653210 00 001235577777553 466677788
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEe
Q 007795 142 RMRRYNILLAQPHKASAPLVAAAKSVWLW 170 (589)
Q Consensus 142 R~RGYNILLAqP~nAS~~L~~aAd~vWlW 170 (589)
+++|..|+++..... .+|...|+.++.-
T Consensus 106 k~~g~~vI~IT~~~~-s~l~~~ad~~l~i 133 (192)
T d1vima_ 106 KDIGSKLVAVTGKRD-SSLAKMADVVMVV 133 (192)
T ss_dssp HHHTCEEEEEESCTT-SHHHHHCSEEEEC
T ss_pred Hhhcccceeeeeccc-cccccccceEEEe
Confidence 889999999875444 4577778877653
No 10
>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]}
Probab=18.44 E-value=44 Score=28.51 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=45.8
Q ss_pred CCCchH-HHHHHHHHHhhHHHHhhcCCcceeecCCCcceeeeccCCCCCCCcHHHHHHHHHHHcCccchhhh
Q 007795 449 HRNTDV-RKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAI 519 (589)
Q Consensus 449 ~~~~dv-kkal~~ai~~~~v~~~~~g~~~l~~~k~e~lwkcvn~~~~~~~~pk~~~d~i~~fl~s~~g~s~i 519 (589)
-.|.+- ++=++..++.-.-+.+.|.+|-.=|- .+|-|. +.++.+.--+++.++|.+||.+++..+.|
T Consensus 58 ktn~efW~~Ki~~N~~RD~~~~~~L~~~GW~vl---~iWEce-lk~~~~~~~e~i~~~L~~~l~~~~~~~~i 125 (134)
T d1vsra_ 58 ATRTEFWLEKIGKNVERDRRDISRLQELGWRVL---IVWECA-LRGREKLTDEALTERLEEWICGEGASAQI 125 (134)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE---EEEHHH-HSSTTCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE---EEecCc-cCCcccccHHHHHHHHHHHHhCCCccccc
Confidence 344552 34467777776666666666554443 369887 55555645688999999999999888776
Done!