BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007796
         (589 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
           Shewanella Oneidensis At 2.20 A Resolution
 pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
           Shewanella Oneidensis At 2.20 A Resolution
 pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
           Shewanella Oneidensis At 2.20 A Resolution
 pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
           Shewanella Oneidensis At 2.20 A Resolution
          Length = 280

 Score = 33.1 bits (74), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 259 LLTLI-SSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAA-P 316
           L+T++ +++ PGLQV   +G W   D  S  G++++  G  L  A+ G  P+  +R   P
Sbjct: 179 LITVLPTANEPGLQVKAKDGSW--LDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINP 236

Query: 317 DFVSCSNGGGRTSLAFRLMPQGNAIL 342
           +         R SL   L P  + +L
Sbjct: 237 E--GTDKTKSRISLPLFLHPHPSVVL 260


>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
          Length = 117

 Score = 32.0 bits (71), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
           P L  VL     G F+D   ++ C HSF    + + ++TS+ C IC  ++     + N+ 
Sbjct: 14  PHLMCVLC---GGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70

Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
                  I  +    LF N   R+R
Sbjct: 71  SDKTLQDIVYKLVPGLFKNEMKRRR 95


>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
          Length = 108

 Score = 32.0 bits (71), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
           P L  VL     G F+D   ++ C HSF    + + ++TS+ C IC  ++     + N+ 
Sbjct: 14  PHLMCVLC---GGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70

Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
                  I  +    LF N   R+R
Sbjct: 71  SDKTLQDIVYKLVPGLFKNEMKRRR 95


>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
           Ligase Complex
          Length = 97

 Score = 32.0 bits (71), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
           P L  VL     G F+D   ++ C HSF    + + ++TS+ C IC  ++     + N+ 
Sbjct: 10  PHLMCVLC---GGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 66

Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
                  I  +    LF N   R+R
Sbjct: 67  SDKTLQDIVYKLVPGLFKNEMKRRR 91


>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
 pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
          Length = 387

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 486 MDPMRRSNRENGDATTTDDGLNRGVQYPF 514
           MD MR+ + ENG A TT +GL  GV + F
Sbjct: 342 MDEMRKKSLENGQA-TTGEGLEWGVLFGF 369


>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
 pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
 pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
           4-Coumaroyl- Primed Monoketide Intermediate
 pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
           4-Coumaroyl- Primed Monoketide Intermediate
          Length = 387

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 486 MDPMRRSNRENGDATTTDDGLNRGVQYPF 514
           MD MR+ + ENG A TT +GL  GV + F
Sbjct: 342 MDEMRKKSLENGQA-TTGEGLEWGVLFGF 369


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,018,088
Number of Sequences: 62578
Number of extensions: 541821
Number of successful extensions: 1015
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 7
length of query: 589
length of database: 14,973,337
effective HSP length: 104
effective length of query: 485
effective length of database: 8,465,225
effective search space: 4105634125
effective search space used: 4105634125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)