BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007796
(589 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DBN5|PUB62_ARATH U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62
PE=2 SV=1
Length = 363
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 117/194 (60%), Gaps = 9/194 (4%)
Query: 375 DGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTS 434
D C+ S L ++ N SLR++LSDP +G+ + DAM++ CGH+FG + +V
Sbjct: 160 DNGCDFSGRRDLSSSSSNSIESLRTILSDPTTGSLMADAMILPCGHTFGAGGIEQVKQMK 219
Query: 435 RCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNR 494
C CS + S+ PNL LR A A +E++ + H + KR++E DQ R
Sbjct: 220 ACCTCSQPVSEDSITPNLTLRVAVQAFCREENSQSNHPS---KRKREGFDQ------ERR 270
Query: 495 ENGDATTTDDGLNRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIG 554
G + N+ +PF+V ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++ +
Sbjct: 271 AFGVTNHSGRSRNKSNHFPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLD 330
Query: 555 SGENVRLQYRSLRK 568
+ E+V+LQYRSL K
Sbjct: 331 NAESVKLQYRSLAK 344
>sp|Q58FY4|PUB63_ARATH U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63
PE=2 SV=1
Length = 383
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 108/174 (62%), Gaps = 9/174 (5%)
Query: 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALR 455
SL+++LSDP++GA ++DA ++ CGHSFG L++V C CS GS PNL+LR
Sbjct: 201 SLKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLEGSEKPNLSLR 260
Query: 456 AAAVAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNRENGDATTTDDGLNRGVQYPFS 515
A +QE+D H KRRKE DQ N T +RG+Q+PFS
Sbjct: 261 IVVHAFRQEEDSDHIHTL---KRRKERSDQKRSFCIPN------ITETPKSSRGIQFPFS 311
Query: 516 VNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRSLRKI 569
+ + ++I+GN+RTP +FVG+ AVI +QCLNGWY++ + + E+++LQ+ SL KI
Sbjct: 312 IGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLAKI 365
>sp|P33288|RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2
Length = 501
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 409 FLDDAMVVSCGHSFGGLMLRKVIDT-SRCTICSAEIETGSLVPNLALRAAAVAIK 462
F D M+ SC H+F L +R+ + S+C +C A + L N ALR A A K
Sbjct: 40 FYDSPMLTSCNHTFCSLCIRRCLSVDSKCPLCRATDQESKLRGNWALREAVEAFK 94
>sp|Q7T3E6|BMI1B_DANRE Polycomb complex protein BMI-1-B OS=Danio rerio GN=bmi1b PE=2 SV=1
Length = 324
Score = 40.4 bits (93), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D +V C HSF + + + ++TS+ C IC ++ + N+
Sbjct: 14 PHLMCVLC---GGYFIDATTIVECLHSFCKMCIVRYLETSKYCPICDVQVHKTKPLLNIR 70
Query: 454 LRAAAVAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNRENGDATTTD 503
I + LF N R+R +D SN + G+ + D
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRRDFYAEHPVDATNGSNEDRGEVSDED 120
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGL-MLRKVIDTSRCTICSAEIETGSLVPNLA 453
P L L P+ + DA + +CGHSF + ++ + + S C CS + L PN
Sbjct: 44 PDLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFL 103
Query: 454 L 454
L
Sbjct: 104 L 104
>sp|Q865W2|TRI50_PIG E3 ubiquitin-protein ligase TRIM50 OS=Sus scrofa GN=TRIM50 PE=2
SV=1
Length = 486
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSF--GGLM-LRKVIDTS-RCTICSAEIETGSLVP 450
P L L P+ + +++ CGHS+ G L+ L + +D+ RC +C E+++ S P
Sbjct: 8 PELEDRLQCPVCLEVFKEPLMLQCGHSYCKGCLLSLSRHLDSELRCPVCRQEVDSSSSPP 67
Query: 451 NLALRAAAVAIKQEDD 466
N++L A++ D
Sbjct: 68 NVSLARVIEALQLPGD 83
>sp|Q54ET0|GRLE_DICDI Metabotropic glutamate receptor-like protein E OS=Dictyostelium
discoideum GN=grlE PE=2 SV=2
Length = 816
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 459 VAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNRENGDATTTDDGLNRGVQYPFSVNE 518
+A + RL+ AL DP+ + N ++G+ T D L G Y +
Sbjct: 367 IAFDKNTGDRLYGEFALLNLINSTKGSFDPIGKINPDSGEITLKSDILYSGPTYKVPSDY 426
Query: 519 KVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRSLR 567
+V++ RT +G VIT C +L +IG G + LQ+R R
Sbjct: 427 QVVVF--DRTLNIVLG---VITGVC-----VLIVIGIGSVIALQWRKFR 465
>sp|Q4WZJ6|RAD18_ASPFU Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1
Length = 418
Score = 37.4 bits (85), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 382 DNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTS-RCTICS 440
D+T ++ L+ L S L + F D+ ++ SC H+F L +R+ + T +C C
Sbjct: 9 DSTDWLETPLSLVSPLESSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPACR 68
Query: 441 AEIETGSLVPNLALRAAAVAIK 462
+ + L N A++ A +
Sbjct: 69 SSDQELKLRRNWAVQELVEAFQ 90
>sp|Q8JIR0|BMI1A_DANRE Polycomb complex protein BMI-1-A OS=Danio rerio GN=bmi1a PE=1 SV=2
Length = 320
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D ++ C HSF + + + ++TS+ C IC ++ + N+
Sbjct: 14 PHLMCVLC---GGYFIDATTIIECLHSFCKMCIVRYLETSKYCPICDVQVHKTKPLLNIR 70
Query: 454 LRAAAVAIKQEDDRRLFHNAALRKRRKEMGDQ--MDPMRRSNRENGDATTTD 503
I + LF N +++RR + +D SN + G+ D
Sbjct: 71 SDKTLQDIVYKLVPGLFKN-EMKRRRDFYAEHPSVDAANGSNEDRGEVADED 121
>sp|Q640D5|BMI1B_XENLA Polycomb complex protein BMI-1-B OS=Xenopus laevis GN=bmi1b PE=2
SV=1
Length = 323
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D A ++ C HSF + + ++TS+ C IC ++ P L
Sbjct: 14 PHLMCVL---CGGYFIDAATIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR--PLLN 68
Query: 454 LRA 456
+RA
Sbjct: 69 IRA 71
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 404 PLSGAFLDDAMVVSCGHSFGGL-MLRKVIDTSRCTICSAEIETGSLVPNLALRAAAVAIK 462
P+ + DA + +CGHSF + ++ + + S C C + +L PN L +K
Sbjct: 48 PICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNFLLDK---LLK 104
Query: 463 QEDDRRL 469
+ DR++
Sbjct: 105 KTSDRQI 111
>sp|Q495X7|TRI60_HUMAN Tripartite motif-containing protein 60 OS=Homo sapiens GN=TRIM60
PE=2 SV=2
Length = 471
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 402 SDPLSGAFLDDAMVVSCGHSFG----GLMLRKVIDTSRCTICSAEIETGSLVPNLALRAA 457
S P+ +L D + ++CGH+F + + + DT C +C S N LR
Sbjct: 15 SCPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDDTFPCPVCRFCFPYKSFRRNPQLRNL 74
Query: 458 AVAIKQEDDRRLFHNAALRKRRKE 481
KQ RR + RKR+KE
Sbjct: 75 TEIAKQLQIRR-----SKRKRQKE 93
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTS---RCTICSAEIETGSLVPNLA 453
L+ ++ P+ L D + + CGH+F + +V TS +C +C + + PN
Sbjct: 10 LQEEVTCPICMEILQDPVTIDCGHNFCLQCISQVGKTSEKIQCPLCKLSVNKNTFRPNKL 69
Query: 454 LRAAAVAIKQED 465
L + A I+ D
Sbjct: 70 LASLAEKIQSMD 81
>sp|Q9TST0|BMI1_FELCA Polycomb complex protein BMI-1 OS=Felis catus GN=BMI1 PE=2 SV=1
Length = 326
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D ++ C HSF + + ++TS+ C IC ++ + N+
Sbjct: 14 PHLMCVL---CGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70
Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
I + LF N R+R
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abelii GN=BMI1 PE=2 SV=1
Length = 326
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D ++ C HSF + + ++TS+ C IC ++ + N+
Sbjct: 14 PHLMCVL---CGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70
Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
I + LF N R+R
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|P35226|BMI1_HUMAN Polycomb complex protein BMI-1 OS=Homo sapiens GN=BMI1 PE=1 SV=2
Length = 326
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D ++ C HSF + + ++TS+ C IC ++ + N+
Sbjct: 14 PHLMCVL---CGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70
Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
I + LF N R+R
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1
Length = 326
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D ++ C HSF + + ++TS+ C IC ++ + N+
Sbjct: 14 PHLMCVL---CGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70
Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
I + LF N R+R
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|Q32KX7|BMI1_BOVIN Polycomb complex protein BMI-1 OS=Bos taurus GN=BMI1 PE=2 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D ++ C HSF + + ++TS+ C IC ++ + N+
Sbjct: 14 PHLMCVL---CGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70
Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
I + LF N R+R
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|A6VP15|GLGB_ACTSZ 1,4-alpha-glucan branching enzyme GlgB OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=glgB PE=3
SV=1
Length = 829
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%)
Query: 1 MVMMMMMMQQQNSSAQPQPQPQSQSTASATAATANNSSLRSPTTAAAAATHAPRQAIPIA 60
+ + ++ A P+ + ++TA ATA N+S T + T +A P+
Sbjct: 720 LATVYFKLKSARKVASPRKVTKKKTTADGAEATAKNASASKATKVSTKKTVKSSEAKPVK 779
Query: 61 AAADHAIGPVVVPISVEPPVA 81
AA ++ V S + P A
Sbjct: 780 AATKSSVTKVATKKSTDKPTA 800
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKV---IDTS-RCTICSAEIETGSLVP 450
P L+ L P+ + +++ CGHS+ L + +D+ RC +C ++ S P
Sbjct: 8 PELQDQLQCPICLEVFKEPLMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQSVDCSSSPP 67
Query: 451 NLALRAAAVAIK 462
N++L A++
Sbjct: 68 NVSLARVIDALR 79
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,617,498
Number of Sequences: 539616
Number of extensions: 9340884
Number of successful extensions: 33664
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 33398
Number of HSP's gapped (non-prelim): 317
length of query: 589
length of database: 191,569,459
effective HSP length: 123
effective length of query: 466
effective length of database: 125,196,691
effective search space: 58341658006
effective search space used: 58341658006
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)