Query 007796
Match_columns 589
No_of_seqs 181 out of 1362
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 15:27:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00273 oxidase reductase; Pr 100.0 4.6E-56 1E-60 464.4 28.4 267 84-376 2-314 (320)
2 PLN02758 oxidoreductase, 2OG-F 100.0 6.6E-56 1.4E-60 470.7 28.3 291 51-375 23-348 (361)
3 PLN02276 gibberellin 20-oxidas 100.0 2E-55 4.4E-60 466.9 30.0 285 52-374 16-340 (361)
4 PLN02485 oxidoreductase 100.0 1.6E-55 3.4E-60 462.1 28.5 272 84-375 4-327 (329)
5 PLN02912 oxidoreductase, 2OG-F 100.0 2.4E-55 5.1E-60 464.4 28.6 289 51-375 13-334 (348)
6 PLN02904 oxidoreductase 100.0 3.4E-55 7.4E-60 464.6 29.8 262 85-374 49-342 (357)
7 COG3491 PcbC Isopenicillin N s 100.0 1.4E-55 3E-60 449.7 24.9 268 83-375 1-311 (322)
8 PLN02216 protein SRG1 100.0 4.1E-55 8.8E-60 464.0 29.1 286 54-375 27-346 (357)
9 PLN03178 leucoanthocyanidin di 100.0 2.7E-55 5.9E-60 465.8 27.8 268 84-375 44-347 (360)
10 PLN02254 gibberellin 3-beta-di 100.0 5.8E-55 1.2E-59 462.9 29.9 288 54-375 28-346 (358)
11 PLN02750 oxidoreductase, 2OG-F 100.0 7.9E-55 1.7E-59 459.8 30.3 263 85-375 24-330 (345)
12 PLN02997 flavonol synthase 100.0 8.3E-55 1.8E-59 456.4 28.9 259 85-373 30-316 (325)
13 PLN02515 naringenin,2-oxogluta 100.0 7.6E-55 1.6E-59 462.0 28.8 265 85-376 35-332 (358)
14 PLN02393 leucoanthocyanidin di 100.0 8.4E-55 1.8E-59 462.4 28.9 293 52-373 22-347 (362)
15 PLN02704 flavonol synthase 100.0 8.5E-55 1.8E-59 457.9 27.5 281 53-372 16-331 (335)
16 PLN02299 1-aminocyclopropane-1 100.0 3.6E-54 7.8E-59 450.9 29.0 265 85-375 4-296 (321)
17 PLN02639 oxidoreductase, 2OG-F 100.0 4.8E-54 1E-58 452.6 29.2 282 53-375 12-326 (337)
18 PLN03002 oxidoreductase, 2OG-F 100.0 3.6E-54 7.7E-59 452.8 28.2 261 83-375 10-322 (332)
19 PLN02947 oxidoreductase 100.0 4.5E-54 9.7E-59 458.4 27.3 289 51-373 34-358 (374)
20 PLN02156 gibberellin 2-beta-di 100.0 2.7E-53 5.9E-58 446.5 28.3 260 86-376 25-317 (335)
21 PLN00417 oxidoreductase, 2OG-F 100.0 3.7E-53 8E-58 447.7 28.9 257 84-367 41-331 (348)
22 PLN02365 2-oxoglutarate-depend 100.0 9.8E-53 2.1E-57 436.2 27.3 253 85-375 3-287 (300)
23 KOG0143 Iron/ascorbate family 100.0 7.9E-51 1.7E-55 425.7 27.9 266 83-375 13-312 (322)
24 PLN02403 aminocyclopropanecarb 100.0 1.3E-50 2.7E-55 421.1 26.8 256 87-375 2-284 (303)
25 PLN02984 oxidoreductase, 2OG-F 100.0 1.5E-49 3.3E-54 419.0 25.5 246 85-375 36-326 (341)
26 PLN03001 oxidoreductase, 2OG-F 100.0 1.2E-42 2.7E-47 354.7 21.2 178 170-373 67-249 (262)
27 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.8 1.7E-19 3.7E-24 156.5 8.2 94 222-336 2-98 (98)
28 PF14226 DIOX_N: non-haem diox 99.4 1.3E-13 2.9E-18 123.0 4.6 69 88-161 1-74 (116)
29 PLN03176 flavanone-3-hydroxyla 99.4 1.6E-12 3.4E-17 118.8 8.1 65 85-150 35-99 (120)
30 PF04564 U-box: U-box domain; 99.2 3.1E-12 6.7E-17 107.0 3.1 67 399-465 3-71 (73)
31 smart00504 Ubox Modified RING 98.9 1.6E-09 3.5E-14 86.8 3.5 60 401-460 2-62 (63)
32 TIGR00599 rad18 DNA repair pro 97.2 0.00052 1.1E-08 74.7 5.5 71 397-467 23-94 (397)
33 PF11789 zf-Nse: Zinc-finger o 96.1 0.0017 3.7E-08 52.2 0.2 38 401-438 12-53 (57)
34 PLN03208 E3 ubiquitin-protein 94.6 0.015 3.2E-07 57.7 1.3 51 403-453 21-88 (193)
35 KOG0287 Postreplication repair 94.5 0.02 4.4E-07 60.6 2.1 80 385-464 5-88 (442)
36 PF13445 zf-RING_UBOX: RING-ty 93.8 0.024 5.3E-07 43.1 0.8 30 404-434 2-35 (43)
37 PF13920 zf-C3HC4_3: Zinc fing 92.8 0.052 1.1E-06 41.8 1.3 35 410-444 12-48 (50)
38 PF13640 2OG-FeII_Oxy_3: 2OG-F 92.4 0.12 2.6E-06 44.7 3.1 68 251-335 12-100 (100)
39 PF13923 zf-C3HC4_2: Zinc fing 92.0 0.064 1.4E-06 39.3 0.9 32 408-439 6-39 (39)
40 PF13532 2OG-FeII_Oxy_2: 2OG-F 91.9 1.7 3.6E-05 42.0 10.8 88 223-333 98-194 (194)
41 PF13639 zf-RING_2: Ring finge 91.9 0.057 1.2E-06 40.5 0.5 30 411-440 14-44 (44)
42 PF15227 zf-C3HC4_4: zinc fing 91.7 0.093 2E-06 39.5 1.4 33 407-439 5-42 (42)
43 COG5432 RAD18 RING-finger-cont 90.7 0.19 4.1E-06 52.6 2.9 80 388-467 10-93 (391)
44 cd00162 RING RING-finger (Real 90.6 0.19 4.1E-06 36.2 2.1 30 414-443 14-45 (45)
45 PF12851 Tet_JBP: Oxygenase do 90.5 0.77 1.7E-05 44.8 6.9 73 250-335 86-170 (171)
46 PRK15401 alpha-ketoglutarate-d 90.2 7.3 0.00016 39.5 13.7 85 223-334 117-212 (213)
47 KOG2177 Predicted E3 ubiquitin 90.1 0.22 4.9E-06 49.2 2.9 68 397-466 10-78 (386)
48 KOG2042 Ubiquitin fusion degra 89.8 0.36 7.8E-06 57.7 4.6 66 402-467 872-939 (943)
49 PF04641 Rtf2: Rtf2 RING-finge 89.8 0.22 4.7E-06 51.5 2.6 96 355-450 54-167 (260)
50 KOG4642 Chaperone-dependent E3 89.3 0.31 6.6E-06 50.3 3.1 67 399-465 210-278 (284)
51 KOG1645 RING-finger-containing 88.0 0.48 1E-05 51.7 3.7 60 414-473 23-88 (463)
52 KOG0978 E3 ubiquitin ligase in 87.8 0.24 5.3E-06 57.5 1.4 53 398-450 641-695 (698)
53 smart00702 P4Hc Prolyl 4-hydro 86.6 7.3 0.00016 37.2 10.7 160 120-335 3-178 (178)
54 smart00184 RING Ring finger. E 85.8 0.46 1E-05 32.8 1.5 30 410-439 8-39 (39)
55 PRK05467 Fe(II)-dependent oxyg 84.8 6.7 0.00014 40.1 9.8 48 267-334 129-176 (226)
56 KOG4628 Predicted E3 ubiquitin 84.2 0.56 1.2E-05 50.6 1.9 38 411-448 243-282 (348)
57 TIGR00570 cdk7 CDK-activating 83.7 1.1 2.3E-05 47.7 3.7 46 413-458 21-72 (309)
58 PF12678 zf-rbx1: RING-H2 zinc 83.4 0.46 1E-05 39.8 0.7 25 416-440 48-73 (73)
59 PF00097 zf-C3HC4: Zinc finger 83.0 0.66 1.4E-05 33.9 1.3 31 409-439 7-41 (41)
60 PHA02929 N1R/p28-like protein; 82.6 0.74 1.6E-05 47.3 1.9 37 413-451 195-232 (238)
61 PF14634 zf-RING_5: zinc-RING 80.0 0.82 1.8E-05 34.4 0.9 29 413-441 15-44 (44)
62 PF14835 zf-RING_6: zf-RING of 79.1 2 4.3E-05 35.7 3.0 57 397-454 4-61 (65)
63 COG5222 Uncharacterized conser 78.9 2 4.4E-05 45.3 3.6 63 401-463 275-341 (427)
64 KOG3113 Uncharacterized conser 78.7 1.1 2.4E-05 46.2 1.7 48 401-449 112-163 (293)
65 KOG0320 Predicted E3 ubiquitin 75.4 1.2 2.6E-05 43.8 0.9 34 417-450 150-184 (187)
66 PF14447 Prok-RING_4: Prokaryo 75.2 1.6 3.4E-05 35.1 1.3 37 411-448 18-54 (55)
67 TIGR02466 conserved hypothetic 73.2 39 0.00085 33.9 11.0 39 278-334 160-198 (201)
68 COG5152 Uncharacterized conser 68.9 1.9 4.2E-05 43.1 0.6 35 410-444 206-241 (259)
69 KOG1813 Predicted E3 ubiquitin 68.1 2 4.2E-05 45.4 0.5 38 407-444 248-286 (313)
70 COG5243 HRD1 HRD ubiquitin lig 67.3 3.1 6.8E-05 45.1 1.8 28 416-443 316-344 (491)
71 KOG0823 Predicted E3 ubiquitin 66.6 2.6 5.7E-05 43.0 1.0 45 409-453 56-104 (230)
72 KOG1734 Predicted RING-contain 65.2 3.9 8.4E-05 42.8 1.9 84 364-452 198-289 (328)
73 KOG0802 E3 ubiquitin ligase [P 64.5 3.2 6.9E-05 47.4 1.3 32 413-444 309-341 (543)
74 COG4068 Uncharacterized protei 61.6 6.8 0.00015 32.0 2.3 38 430-479 5-42 (64)
75 PF13759 2OG-FeII_Oxy_5: Putat 59.9 11 0.00024 32.9 3.7 38 277-332 63-100 (101)
76 COG5113 UFD2 Ubiquitin fusion 59.4 10 0.00023 43.9 4.1 68 397-464 851-920 (929)
77 smart00739 KOW KOW (Kyprides, 55.1 13 0.00028 24.6 2.5 25 513-542 1-25 (28)
78 PF07350 DUF1479: Protein of u 45.7 12 0.00027 41.5 1.9 57 84-147 46-102 (416)
79 KOG2660 Locus-specific chromos 45.2 24 0.00051 38.0 3.8 62 399-460 14-81 (331)
80 KOG4172 Predicted E3 ubiquitin 43.9 6.5 0.00014 31.8 -0.4 32 412-444 19-54 (62)
81 KOG0289 mRNA splicing factor [ 43.5 11 0.00023 42.0 1.1 46 405-450 5-52 (506)
82 PHA02926 zinc finger-like prot 43.1 13 0.00028 38.1 1.5 37 414-452 193-236 (242)
83 COG5627 MMS21 DNA repair prote 42.2 29 0.00064 35.8 3.8 52 417-468 207-265 (275)
84 PF14311 DUF4379: Domain of un 40.7 13 0.00028 29.3 0.9 23 417-439 33-55 (55)
85 KOG4265 Predicted E3 ubiquitin 40.2 13 0.00028 40.3 1.0 68 370-444 267-336 (349)
86 KOG0824 Predicted E3 ubiquitin 38.0 18 0.00039 38.5 1.6 42 412-453 19-63 (324)
87 KOG4275 Predicted E3 ubiquitin 36.2 7.9 0.00017 41.0 -1.3 30 412-443 312-341 (350)
88 KOG4367 Predicted Zn-finger pr 35.7 13 0.00028 41.3 0.1 21 402-422 6-26 (699)
89 KOG0317 Predicted E3 ubiquitin 33.9 23 0.00049 37.5 1.6 42 407-448 246-288 (293)
90 COG1724 Predicted RNA binding 33.1 26 0.00056 29.3 1.5 13 544-556 18-30 (66)
91 smart00333 TUDOR Tudor domain. 31.2 84 0.0018 24.1 4.1 53 513-570 2-54 (57)
92 PF01157 Ribosomal_L21e: Ribos 31.1 71 0.0015 28.8 4.1 35 513-547 32-73 (99)
93 KOG3671 Actin regulatory prote 30.7 2.1E+02 0.0046 32.8 8.4 27 85-113 478-504 (569)
94 PF09889 DUF2116: Uncharacteri 30.3 56 0.0012 26.8 2.9 28 433-472 3-30 (59)
95 COG5540 RING-finger-containing 30.0 30 0.00066 37.0 1.8 34 411-444 337-372 (374)
96 COG4647 AcxC Acetone carboxyla 29.9 21 0.00045 33.7 0.5 14 417-430 74-87 (165)
97 PF08882 Acetone_carb_G: Aceto 29.7 23 0.0005 32.5 0.8 19 434-452 75-93 (112)
98 PRK08333 L-fuculose phosphate 29.4 88 0.0019 30.4 4.8 38 85-128 118-155 (184)
99 KOG2979 Protein involved in DN 28.6 31 0.00068 36.0 1.6 39 402-440 178-222 (262)
100 cd04451 S1_IF1 S1_IF1: Transla 28.1 62 0.0013 26.1 2.9 25 536-562 4-29 (64)
101 PF00018 SH3_1: SH3 domain; I 27.9 71 0.0015 24.0 3.1 29 512-557 14-42 (48)
102 KOG1924 RhoA GTPase effector D 27.6 1.1E+02 0.0025 36.7 5.9 24 451-474 987-1010(1102)
103 KOG0297 TNF receptor-associate 27.1 48 0.001 36.5 2.8 58 399-456 20-81 (391)
104 PRK08130 putative aldolase; Va 25.5 1.1E+02 0.0024 30.5 4.9 38 85-128 125-162 (213)
105 PF10571 UPF0547: Uncharacteri 24.9 33 0.00071 23.5 0.6 14 410-423 11-25 (26)
106 PF00567 TUDOR: Tudor domain; 23.7 54 0.0012 28.1 2.0 36 537-572 71-106 (121)
107 KOG4159 Predicted E3 ubiquitin 23.3 61 0.0013 36.0 2.7 39 407-445 91-130 (398)
108 PF09629 YorP: YorP protein; 23.3 68 0.0015 26.5 2.2 34 513-547 6-40 (71)
109 COG3357 Predicted transcriptio 23.2 34 0.00074 30.4 0.6 31 409-442 55-85 (97)
110 COG0325 Predicted enzyme with 21.8 5.4E+02 0.012 26.7 8.9 93 103-208 101-208 (228)
111 KOG4692 Predicted E3 ubiquitin 21.5 46 0.00099 36.3 1.3 35 411-445 433-468 (489)
112 smart00834 CxxC_CXXC_SSSS Puta 21.1 27 0.00059 25.2 -0.4 27 417-443 10-36 (41)
113 cd00350 rubredoxin_like Rubred 20.8 48 0.001 23.6 0.8 21 417-442 6-26 (33)
No 1
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=4.6e-56 Score=464.38 Aligned_cols=267 Identities=20% Similarity=0.253 Sum_probs=229.7
Q ss_pred CCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC-------CCCCc
Q 007796 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-------GKGSR 156 (589)
Q Consensus 84 ~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~-------~~~~r 156 (589)
+.+.||+|||+.+.++++.++.+++++|.+||+++|||||.||||+.++++++++.+++||+||.|++ ....+
T Consensus 2 ~~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~ 81 (320)
T PTZ00273 2 TRASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHR 81 (320)
T ss_pred CCCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCC
Confidence 46789999999998777778889999999999999999999999999999999999999999999882 12356
Q ss_pred ccccccC------C------cC----------------------CCCCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHh
Q 007796 157 GVYMYRA------G------RA----------------------LEDWDSS-P---PCMADIFRCMGKAARAALFAIARH 198 (589)
Q Consensus 157 GyY~~~~------g------e~----------------------lddWP~~-P---~~m~~y~~~m~kla~~LL~aIA~~ 198 (589)
|| .... + +. ...||.. | +.+++|++.|.+++..||++||++
T Consensus 82 GY-~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~ 160 (320)
T PTZ00273 82 GY-GAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALA 160 (320)
T ss_pred CC-CCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 73 3211 0 00 0017755 3 799999999999999999999999
Q ss_pred CCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCC
Q 007796 199 LRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNG 277 (589)
Q Consensus 199 LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G 277 (589)
|||++++|.+.+++ + .+.+|++|||+++.... .. .++++|||+|+||||+||. +||||++++|
T Consensus 161 Lgl~~~~f~~~~~~-~------~~~lrl~~YP~~~~~~~-~~--------~g~~~HTD~g~lTlL~qd~~~GLqV~~~~g 224 (320)
T PTZ00273 161 IGLREDFFDSKFME-P------LSVFRMKHYPALPQTKK-GR--------TVCGEHTDYGIITLLYQDSVGGLQVRNLSG 224 (320)
T ss_pred hCcCHHHHHHhhCC-C------cceeeeeecCCCCCccc-cC--------cccccccCCCeEEEEecCCCCceEEECCCC
Confidence 99999999998866 3 25899999999874321 12 3589999999999999996 9999999899
Q ss_pred ceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCC
Q 007796 278 RWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQS 357 (589)
Q Consensus 278 ~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~ 357 (589)
+|++|++. ||++|||+||+|++||||+|+|++|||+.+ ..+|||++||++|+.|++|.|+++++.. +.|.+
T Consensus 225 ~Wi~V~p~--pg~lvVNvGD~l~~~TnG~~kSt~HRVv~~------~~~R~Si~~F~~p~~d~~i~pl~~~~~~-~~~~~ 295 (320)
T PTZ00273 225 EWMDVPPL--EGSFVVNIGDMMEMWSNGRYRSTPHRVVNT------GVERYSMPFFCEPNPNVIIKCLDNCHSE-ENPPK 295 (320)
T ss_pred CEEeCCCC--CCeEEEEHHHHHHHHHCCeeeCCCccccCC------CCCeEEEEEEEcCCCCceEecCccccCC-CCccc
Confidence 99999998 999999999999999999999999999853 4689999999999999999999998854 57899
Q ss_pred CCCccHHHHHHHHHHhhcc
Q 007796 358 YVPISVSQFMDDLSAEEDG 376 (589)
Q Consensus 358 y~pit~~df~~~r~~~~~~ 376 (589)
|++++++||+..++...|.
T Consensus 296 y~~~~~~e~~~~~~~~~~~ 314 (320)
T PTZ00273 296 YPPVRAVDWLLKRFAETYA 314 (320)
T ss_pred CCceeHHHHHHHHHHHHHH
Confidence 9999999999999988773
No 2
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.6e-56 Score=470.69 Aligned_cols=291 Identities=14% Similarity=0.143 Sum_probs=239.0
Q ss_pred cCCCCccchhhccCCCCCCcccCCCCCCCCCCCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCH
Q 007796 51 HAPRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDA 130 (589)
Q Consensus 51 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ 130 (589)
+...++|+.++-+++.++. .. .+ ...+...||+|||+.+.+++.+++++++++|.+||++||||+|.||||+.
T Consensus 23 ~~~~~vp~~~v~~~~~~p~-~~----~~--~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~ 95 (361)
T PLN02758 23 SKPTTVPERFIRDMDERPD-LA----SD--TLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIEL 95 (361)
T ss_pred cCCCCCCHHHcCCchhccc-cc----cc--cccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCH
Confidence 3456777777766555421 11 00 11124579999999998766667788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccCC------CCCCcccccccCC---c--------------C-----CCCCCCCh----HHHH
Q 007796 131 AIMRCGLEAARLYFRTKSQTV------GKGSRGVYMYRAG---R--------------A-----LEDWDSSP----PCMA 178 (589)
Q Consensus 131 ell~~a~~~ar~FF~LP~Ee~------~~~~rGyY~~~~g---e--------------~-----lddWP~~P----~~m~ 178 (589)
++++++++.+++||+||.|+| ....+|| ..... . + ..-||..| +.++
T Consensus 96 ~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY-~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr~~~~ 174 (361)
T PLN02758 96 ELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGY-GQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFSETLE 174 (361)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcccCCCcccc-CcccccccccccCeeEEEEeeccCccccccccCccccHHHHHHHH
Confidence 999999999999999999882 2235674 22110 0 0 00199764 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCc
Q 007796 179 DIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKG 258 (589)
Q Consensus 179 ~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~G 258 (589)
+|+++|.+++..||++||++|||++++|.+++++ + .+.+|++|||+++.++. . + ++++|||+|
T Consensus 175 ~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~------~~~lR~~~YP~~~~~~~--~---~-----g~~~HtD~g 237 (361)
T PLN02758 175 VYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGE-A------VQAVRMNYYPPCSRPDL--V---L-----GLSPHSDGS 237 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcC-c------cceeeeecCCCCCCccc--c---c-----CccCccCCc
Confidence 9999999999999999999999999999998866 2 25899999999875432 1 3 489999999
Q ss_pred eEEEEecC---CCccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeee
Q 007796 259 LLTLISSD---SPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLM 335 (589)
Q Consensus 259 lLTLL~qD---~~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~ 335 (589)
+||||+|| .+||||++ +|+|++|++. ||++|||+||+|++||||+|+|++|||+.+ ..++|||++||++
T Consensus 238 ~lTlL~qd~~~v~GLQV~~-~g~Wi~V~p~--pgalVVNiGD~L~~~SNG~~kS~~HRVv~~-----~~~~R~Sia~F~~ 309 (361)
T PLN02758 238 ALTVLQQGKGSCVGLQILK-DNTWVPVHPV--PNALVINIGDTLEVLTNGKYKSVEHRAVTN-----KEKDRLSIVTFYA 309 (361)
T ss_pred eeEEEEeCCCCCCCeeeee-CCEEEeCCCC--CCeEEEEccchhhhhcCCeeecccceeecC-----CCCCEEEEEEEec
Confidence 99999997 37999986 6899999998 999999999999999999999999999964 3478999999999
Q ss_pred cCCCcEEecCcccccCCCCCCCCCCccHHHHHHHHHHhhc
Q 007796 336 PQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 336 P~~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~~~~ 375 (589)
|+.|++|.|+++++.+ +.|++|++++++||+..++....
T Consensus 310 P~~d~~i~pl~elv~~-~~p~~Y~~~~~~ey~~~~~~~~~ 348 (361)
T PLN02758 310 PSYEVELGPMPELVDD-ENPCKYRRYNHGEYSRHYVTSKL 348 (361)
T ss_pred CCCCCeEeCCHHHcCC-CCCCcCCCccHHHHHHHHHhccc
Confidence 9999999999999854 57899999999999999887644
No 3
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=2e-55 Score=466.91 Aligned_cols=285 Identities=18% Similarity=0.208 Sum_probs=235.6
Q ss_pred CCCCccchhhccCCCCCCcccCCCCCCCCCCCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHH
Q 007796 52 APRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAA 131 (589)
Q Consensus 52 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~e 131 (589)
+...+|+.++-++|.+ |. +......||+|||+.+.+++++++.+++++|.+||++||||+|.||||+.+
T Consensus 16 ~~~~vp~~~~~~~~~~-p~----------~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~ 84 (361)
T PLN02276 16 KQSNIPAQFIWPDEEK-PS----------AAVPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAA 84 (361)
T ss_pred CCCCCCHHhcCCcccc-CC----------CCCcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHH
Confidence 3445777777666665 21 011246899999999987777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCC------CCCCcccccccCCc-----------------CC-------CC-----CCCC-h-
Q 007796 132 IMRCGLEAARLYFRTKSQTV------GKGSRGVYMYRAGR-----------------AL-------ED-----WDSS-P- 174 (589)
Q Consensus 132 ll~~a~~~ar~FF~LP~Ee~------~~~~rGyY~~~~ge-----------------~l-------dd-----WP~~-P- 174 (589)
+++++++.+++||+||.|++ ....+|| .....+ .. .+ ||.. +
T Consensus 85 l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY-~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 163 (361)
T PLN02276 85 LIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGY-ASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQ 163 (361)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhccCCCCcccc-CccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHH
Confidence 99999999999999999983 1235674 221100 00 01 4432 2
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCC
Q 007796 175 --PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMN 252 (589)
Q Consensus 175 --~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~ 252 (589)
+.+++|+..|.+++..||++||++|||++++|.+++.+ + .+.+|++|||+++..+. . + +++
T Consensus 164 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~------~~~lrl~~YP~~~~~~~--~---~-----g~~ 226 (361)
T PLN02276 164 FGKVYQEYCEAMKTLSLKIMELLGISLGVDRGYYRKFFED-G------DSIMRCNYYPPCQEPEL--T---L-----GTG 226 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC-c------cceeeeEeCCCCCCccc--c---c-----CCc
Confidence 58999999999999999999999999999999998865 2 25899999999865432 1 3 599
Q ss_pred CcccCceEEEEecCC-CccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEE
Q 007796 253 GEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLA 331 (589)
Q Consensus 253 ~HTD~GlLTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~Sia 331 (589)
+|||+|+||||+||. +||||+ .+|+|++|+|. ||++|||+||+|++||||+|+|++|||+.+ ...+|||++
T Consensus 227 ~HTD~g~lTlL~Qd~v~GLQV~-~~g~Wi~V~p~--pgalVVNiGD~L~~~TNG~~kSt~HRVv~~-----~~~~R~Sia 298 (361)
T PLN02276 227 PHCDPTSLTILHQDQVGGLQVF-VDNKWRSVRPR--PGALVVNIGDTFMALSNGRYKSCLHRAVVN-----SERERRSLA 298 (361)
T ss_pred cccCCceeEEEEecCCCceEEE-ECCEEEEcCCC--CCeEEEEcHHHHHHHhCCccccccceeecC-----CCCCEEEEE
Confidence 999999999999996 999999 58999999998 999999999999999999999999999864 357899999
Q ss_pred EeeecCCCcEEecCcccccCCCCCCCCCCccHHHHHHHHHHhh
Q 007796 332 FRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEE 374 (589)
Q Consensus 332 fF~~P~~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~~~ 374 (589)
||++|+.|++|.|+++++. ++.|++|++++++||++.+....
T Consensus 299 ~F~~P~~d~~i~pl~~~v~-~~~p~~y~~~~~~ey~~~~~~~~ 340 (361)
T PLN02276 299 FFLCPKEDKVVRPPQELVD-REGPRKYPDFTWSDLLEFTQKHY 340 (361)
T ss_pred EEecCCCCCEEeCChHhcC-CCCCCcCCCCCHHHHHHHHHHhc
Confidence 9999999999999999984 45799999999999998766543
No 4
>PLN02485 oxidoreductase
Probab=100.00 E-value=1.6e-55 Score=462.14 Aligned_cols=272 Identities=18% Similarity=0.227 Sum_probs=225.7
Q ss_pred CCCCcceEeCCCCCCC-------CCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC-----
Q 007796 84 MLPRVRLSDVAPYDGA-------PAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV----- 151 (589)
Q Consensus 84 ~~a~IPvIDLs~l~~~-------ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~----- 151 (589)
++..||+|||+.+.+. ++.++.+++++|.+||+++|||||.||||+.++++++++.+++||+||.|+|
T Consensus 4 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~ 83 (329)
T PLN02485 4 DFKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKM 83 (329)
T ss_pred CCCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcc
Confidence 4678999999998642 1235778999999999999999999999999999999999999999999882
Q ss_pred --CCCCcccccccCC----------c------------------CC---CCCCCCh----HHHHHHHHHHHHHHHHHHHH
Q 007796 152 --GKGSRGVYMYRAG----------R------------------AL---EDWDSSP----PCMADIFRCMGKAARAALFA 194 (589)
Q Consensus 152 --~~~~rGyY~~~~g----------e------------------~l---ddWP~~P----~~m~~y~~~m~kla~~LL~a 194 (589)
...++| |..... | .. ..||..+ +.+++|+++|.++++.||++
T Consensus 84 ~~~~~~rG-Y~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ 162 (329)
T PLN02485 84 TPAAGYRG-YQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILRG 162 (329)
T ss_pred cCCCCCCC-cccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123567 322100 0 00 1288764 89999999999999999999
Q ss_pred HHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecC-C-Cccce
Q 007796 195 IARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD-S-PGLQV 272 (589)
Q Consensus 195 IA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD-~-~GLQV 272 (589)
||++|||++++|.+.+...+ .+.+|++|||+++....... ...++++|||+|+||||+|| . +||||
T Consensus 163 ~a~~Lgl~~~~f~~~~~~~~------~~~lrl~~YP~~~~~~~~~~------~~~g~~~HTD~g~lTlL~qd~~~~GLqV 230 (329)
T PLN02485 163 IALALGGSPDEFEGKMAGDP------FWVMRIIGYPGVSNLNGPPE------NDIGCGAHTDYGLLTLVNQDDDITALQV 230 (329)
T ss_pred HHHHcCCChHHhhhhhccCc------cceEEEEeCCCCccccCCcc------cCcccccccCCCeEEEEeccCCCCeeeE
Confidence 99999999999987653322 35899999999875221100 12469999999999999996 4 99999
Q ss_pred EcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCccccc-C
Q 007796 273 CDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAA-G 351 (589)
Q Consensus 273 ~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~va-g 351 (589)
++++|+|++|++. ||++|||+||+|++||||+|+|++|||+.+ .+.+||||+||++|+.|++|.|++.++. +
T Consensus 231 ~~~~g~Wi~V~p~--pg~~vVNiGD~L~~~TnG~~~St~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~ 303 (329)
T PLN02485 231 RNLSGEWIWAIPI--PGTFVCNIGDMLKIWSNGVYQSTLHRVINN-----SPKYRVCVAFFYETNFDAAVEPLDICKEKR 303 (329)
T ss_pred EcCCCcEEECCCC--CCcEEEEhHHHHHHHHCCEeeCCCceecCC-----CCCCeEEEEEEecCCCCceeecchhhcccc
Confidence 9989999999998 999999999999999999999999999974 3468999999999999999999999874 1
Q ss_pred CCCCCCCCCccHHHHHHHHHHhhc
Q 007796 352 HVIPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 352 ~~~p~~y~pit~~df~~~r~~~~~ 375 (589)
.+.|++|++++++||+..++.+.+
T Consensus 304 ~~~~~~y~~~t~~e~~~~~~~~~~ 327 (329)
T PLN02485 304 TGGSQVFKRVVYGEHLVNKVLTNF 327 (329)
T ss_pred cCCCCCCCcEeHHHHHHHHHHHhh
Confidence 346899999999999999988765
No 5
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.4e-55 Score=464.39 Aligned_cols=289 Identities=15% Similarity=0.195 Sum_probs=232.8
Q ss_pred cCCCCccchhhccCCCCCCcccCCCCCCCCCCCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCH
Q 007796 51 HAPRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDA 130 (589)
Q Consensus 51 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ 130 (589)
+...++|+.++-+++.+++.. .+ ..+...||+|||+.+.+. .+.+++++|.+||++||||||.||||+.
T Consensus 13 ~~~~~~p~~~~~~~~~~~~~~-------~~-~~~~~~iPvIDls~~~~~---~~~~~~~~l~~A~~~~GFf~v~nHGI~~ 81 (348)
T PLN02912 13 SVVDHVPSNYVRPVSDRPNMS-------EV-ETSGDSIPLIDLRDLHGP---NRADIINQFAHACSSYGFFQIKNHGVPE 81 (348)
T ss_pred cCCCCCCHHhcCCchhccccc-------cc-cccCCCCCeEECcccCCc---CHHHHHHHHHHHHHHCCEEEEEeCCCCH
Confidence 345567777776665442111 11 113467999999988542 3678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccCCCC-------CCccccccc----CCc------------C----CCCCCCCh----HHHHH
Q 007796 131 AIMRCGLEAARLYFRTKSQTVGK-------GSRGVYMYR----AGR------------A----LEDWDSSP----PCMAD 179 (589)
Q Consensus 131 ell~~a~~~ar~FF~LP~Ee~~~-------~~rGyY~~~----~ge------------~----lddWP~~P----~~m~~ 179 (589)
++++++++.+++||+||.|+|.+ ...+||... .+. + ...||..| +.+.+
T Consensus 82 ~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr~~~~~ 161 (348)
T PLN02912 82 ETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFNVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAE 161 (348)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccccccccccccCCchheEEEeecCcccccccCcchhHHHHHHHHH
Confidence 99999999999999999988322 111112110 000 0 01288664 79999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCce
Q 007796 180 IFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGL 259 (589)
Q Consensus 180 y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~Gl 259 (589)
|+++|.+++.+||++||++|||++++|.+++.. + .+.+|++|||+++..+. . + |+++|||+|+
T Consensus 162 y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~-~------~~~lrl~~YPp~~~~~~--~---~-----G~~~HtD~g~ 224 (348)
T PLN02912 162 YATSVRALVLTLLEAISESLGLEKDRVSNTLGK-H------GQHMAINYYPPCPQPEL--T---Y-----GLPGHKDANL 224 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC-c------cceeeeeecCCCCChhh--c---C-----CcCCCcCCCc
Confidence 999999999999999999999999999998865 2 25899999999875332 2 3 4899999999
Q ss_pred EEEEecCC-CccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCC
Q 007796 260 LTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQG 338 (589)
Q Consensus 260 LTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~ 338 (589)
||||+||. +||||+ .+|+|++|+|. ||++|||+||+|++||||+|+|++|||+.+ ...+|||++||++|+.
T Consensus 225 lTlL~Qd~v~GLQV~-~~g~Wi~V~p~--pgalvVNiGD~L~~~TNG~~kSt~HRVv~~-----~~~~R~Sia~F~~p~~ 296 (348)
T PLN02912 225 ITVLLQDEVSGLQVF-KDGKWIAVNPI--PNTFIVNLGDQMQVISNDKYKSVLHRAVVN-----TDKERISIPTFYCPSE 296 (348)
T ss_pred eEEEEECCCCceEEE-ECCcEEECCCc--CCeEEEEcCHHHHHHhCCEEEcccccccCC-----CCCCEEEEEEEecCCC
Confidence 99999996 999999 57899999998 999999999999999999999999999864 3468999999999999
Q ss_pred CcEEecCcccccCC-CCCCCCCCccHHHHHHHHHHhhc
Q 007796 339 NAILDCSPIAAAGH-VIPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 339 DavI~Plp~~vag~-~~p~~y~pit~~df~~~r~~~~~ 375 (589)
|++|.|+++++.++ ..|++|++++++||+..++....
T Consensus 297 d~~i~pl~~~v~~~~~~p~~y~~~~~~ey~~~~~~~~~ 334 (348)
T PLN02912 297 DAVIGPAQELINEEEDSLAIYRNFTYAEYFEKFWDTAF 334 (348)
T ss_pred CCeEeCCHHHhCcCCCCCCCCCCCcHHHHHHHHHhccc
Confidence 99999999998543 25899999999999988877544
No 6
>PLN02904 oxidoreductase
Probab=100.00 E-value=3.4e-55 Score=464.55 Aligned_cols=262 Identities=17% Similarity=0.188 Sum_probs=222.8
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCCCC-------CCcc
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK-------GSRG 157 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~~~-------~~rG 157 (589)
...||+|||+.+.+ ++.+.+++++|.+||++||||+|.||||+.++++++++.+++||+||.|+|.. ...|
T Consensus 49 ~~~iPvIDls~~~~--~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~ 126 (357)
T PLN02904 49 TITLPVIDLSLLHD--PLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVR 126 (357)
T ss_pred CCCCCEEECcccCC--chhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCccc
Confidence 35799999998864 35678899999999999999999999999999999999999999999988321 1122
Q ss_pred cccc-cC----C------------cCC----CCCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcC
Q 007796 158 VYMY-RA----G------------RAL----EDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDD 212 (589)
Q Consensus 158 yY~~-~~----g------------e~l----ddWP~~-P---~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~ 212 (589)
|.. .. . .+. .-||.. | +.+++|+++|.+++..||++||++|||++++|.+.+.+
T Consensus 127 -~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 205 (357)
T PLN02904 127 -YGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEE 205 (357)
T ss_pred -ccccccccCCCCCCceEEeeeccCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 111 00 0 000 118865 3 89999999999999999999999999999999998865
Q ss_pred CCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCCCccceEcCCCceEEccCCCCCCcEE
Q 007796 213 TPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLL 292 (589)
Q Consensus 213 ~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~~GLQV~~~~G~Wi~Vpp~~~pg~lV 292 (589)
+ .+.+|++|||+++..+. . + |+++|||+|+||||+||.+||||++++|+|++|+|. ||++|
T Consensus 206 -~------~~~lrl~~YPp~p~~~~--~---~-----g~~~HtD~g~lTlL~qd~~GLQV~~~~g~Wi~V~p~--pgalV 266 (357)
T PLN02904 206 -G------SQVMAVNCYPACPEPEI--A---L-----GMPPHSDFGSLTILLQSSQGLQIMDCNKNWVCVPYI--EGALI 266 (357)
T ss_pred -c------ccEEEeeecCCCCCccc--c---c-----CCcCccCCCceEEEecCCCeeeEEeCCCCEEECCCC--CCeEE
Confidence 2 25899999999875432 2 3 589999999999999999999999988999999998 99999
Q ss_pred EEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCCCccHHHHHHHHHH
Q 007796 293 LITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSA 372 (589)
Q Consensus 293 VNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~ 372 (589)
||+||+|++||||+|+|++|||+.+ ...+||||+||++|+.|++|.|+++++. ++.|++|++++++||+..++.
T Consensus 267 VNiGD~Le~~TNG~~kSt~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~Pl~~~v~-~~~p~~Y~~~~~~ey~~~~~~ 340 (357)
T PLN02904 267 VQLGDQVEVMSNGIYKSVVHRVTVN-----KDYKRLSFASLHSLPLHKKISPAPELVN-ENKPAAYGEFSFNDFLDYISS 340 (357)
T ss_pred EEccHHHHHHhCCeeeccCCcccCC-----CCCCEEEEEEeecCCCCCeEeCCHHHcC-CCCCCcCCCCCHHHHHHHHHh
Confidence 9999999999999999999999874 3468999999999999999999999984 457899999999999988876
Q ss_pred hh
Q 007796 373 EE 374 (589)
Q Consensus 373 ~~ 374 (589)
+.
T Consensus 341 ~~ 342 (357)
T PLN02904 341 ND 342 (357)
T ss_pred cc
Confidence 53
No 7
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=1.4e-55 Score=449.65 Aligned_cols=268 Identities=22% Similarity=0.279 Sum_probs=228.3
Q ss_pred CCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC-------CCCC
Q 007796 83 TMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-------GKGS 155 (589)
Q Consensus 83 ~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~-------~~~~ 155 (589)
+++..||+|||+.+.+.++.++.+++++|++||+++|||||.+||++.++++++++++|.||+||.|+| +..+
T Consensus 1 ~~~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~ 80 (322)
T COG3491 1 MSTRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQH 80 (322)
T ss_pred CCCCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccc
Confidence 356789999999999999999999999999999999999999999999999999999999999999982 4468
Q ss_pred cccccccCCcCCC-----------------------------C---CCCCh---HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007796 156 RGVYMYRAGRALE-----------------------------D---WDSSP---PCMADIFRCMGKAARAALFAIARHLR 200 (589)
Q Consensus 156 rGyY~~~~ge~ld-----------------------------d---WP~~P---~~m~~y~~~m~kla~~LL~aIA~~LG 200 (589)
+|| ....+|..+ + ||.-| +.+..|+++|.+++.+||++||.+|+
T Consensus 81 rGY-~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~Ld 159 (322)
T COG3491 81 RGY-TPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWPAIPGLRDALLQYYRAMTAVGLRLLRAIALGLD 159 (322)
T ss_pred ccc-ccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 884 332222110 1 88556 89999999999999999999999999
Q ss_pred CChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCCce
Q 007796 201 LRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRW 279 (589)
Q Consensus 201 L~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G~W 279 (589)
|++++|..++++ |. +++|++|||+.+...+. .+.++|+|+|+||||+||. +||||++++|+|
T Consensus 160 L~~d~Fd~~~~d-~~------~~~RLlrYP~~~~~~~~----------~~~GaHtD~G~lTLl~Qd~~~GLqv~~~~g~W 222 (322)
T COG3491 160 LPEDFFDKRTSD-PN------SVLRLLRYPSRPAREGA----------DGVGAHTDYGLLTLLFQDDVGGLEVRPPNGGW 222 (322)
T ss_pred CChhhhhhccCC-ch------heEEEEecCCCcccccc----------cccccccCCCeEEEEEecccCCeEEecCCCCe
Confidence 999999999776 55 49999999987753321 2479999999999999996 999999999999
Q ss_pred EEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCC
Q 007796 280 YLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYV 359 (589)
Q Consensus 280 i~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~ 359 (589)
++|+|. ||++|||+|||||+||||+|+||+|||+.| ++.+||||+||+.|+.|+.|.|+..+..+...+.++.
T Consensus 223 l~v~P~--pgtlvVNiGdmLe~~Tng~lrST~HRV~~~-----~~~~R~SipfF~~p~~Da~I~Pl~~l~~~~a~~~~~~ 295 (322)
T COG3491 223 LDVPPI--PGTLVVNIGDMLERWTNGRLRSTVHRVRNP-----PGVDRYSIPFFLEPNFDAEIAPLLPLCPEAANEPRGP 295 (322)
T ss_pred eECCCC--CCeEEEeHHHHHHHHhCCeeccccceeecC-----CCccceeeeeeccCCCCccccccCCCCcccccCCcCC
Confidence 999999 999999999999999999999999999985 3479999999999999999998665443445667777
Q ss_pred CccHHHHHHHHHHhhc
Q 007796 360 PISVSQFMDDLSAEED 375 (589)
Q Consensus 360 pit~~df~~~r~~~~~ 375 (589)
.-+..+++.+.+..++
T Consensus 296 ~t~~~n~l~r~~~~n~ 311 (322)
T COG3491 296 GTDPDNPLLRDYATNF 311 (322)
T ss_pred CCCCCchHHHHHHHHH
Confidence 7666666665555555
No 8
>PLN02216 protein SRG1
Probab=100.00 E-value=4.1e-55 Score=464.01 Aligned_cols=286 Identities=14% Similarity=0.153 Sum_probs=232.2
Q ss_pred CCccchhhccCCCCCCcccCCCCCCCCCCCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHH
Q 007796 54 RQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIM 133 (589)
Q Consensus 54 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell 133 (589)
.++|+.++-+++.++.+. ........||+|||+.+.+++ .+.+++++|.+||++||||+|.||||+.+++
T Consensus 27 ~~~p~~~v~p~~~~~~~~--------~~~~~~~~iPvIDls~~~~~~--~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li 96 (357)
T PLN02216 27 TTVPPRYVRSDQDKTEIA--------VDSGLSSEIPIIDMKRLCSST--AMDSEVEKLDFACKEWGFFQLVNHGIDSSFL 96 (357)
T ss_pred CCCCHhhCcCcccCCccc--------cccCcCCCCCeEEChhccCCc--cHHHHHHHHHHHHHHCcEEEEECCCCCHHHH
Confidence 456666666655542110 011123589999999986543 3456899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccCC------CCCCcccccccCC---c--------------CC--C---CCCCCh----HHHHHHH
Q 007796 134 RCGLEAARLYFRTKSQTV------GKGSRGVYMYRAG---R--------------AL--E---DWDSSP----PCMADIF 181 (589)
Q Consensus 134 ~~a~~~ar~FF~LP~Ee~------~~~~rGyY~~~~g---e--------------~l--d---dWP~~P----~~m~~y~ 181 (589)
+++++.+++||+||.|+| ....+|| ..... . +. . -||..| +.+++|+
T Consensus 97 ~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy-~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~ 175 (357)
T PLN02216 97 DKVKSEIQDFFNLPMEEKKKLWQRPGEIEGF-GQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYS 175 (357)
T ss_pred HHHHHHHHHHHcCCHHHHHhhhcCCCCcccc-CccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHH
Confidence 999999999999999883 2235673 21100 0 00 0 188764 8999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEE
Q 007796 182 RCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLT 261 (589)
Q Consensus 182 ~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLT 261 (589)
++|.+++.+||++||++|||++++|.+++++ + ..+.+|++|||+++.++. . + ++++|||+|+||
T Consensus 176 ~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~-----~~~~lRl~~YPp~p~~~~--~---~-----G~~~HtD~g~lT 239 (357)
T PLN02216 176 AEVKSIAKILFAKMASALEIKPEEMEKLFDD-D-----LGQSIRMNYYPPCPQPDQ--V---I-----GLTPHSDAVGLT 239 (357)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc-C-----chheeEEeecCCCCCccc--c---c-----CccCcccCceEE
Confidence 9999999999999999999999999998865 2 124899999999975432 1 3 499999999999
Q ss_pred EEecC--CCccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCC
Q 007796 262 LISSD--SPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGN 339 (589)
Q Consensus 262 LL~qD--~~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~D 339 (589)
||+|| .+||||+ .+|+|++|+|. ||++|||+||+|++||||+|+|++|||+.+ ..++||||+||+.|..|
T Consensus 240 lL~q~~~v~GLQV~-~~g~Wi~V~p~--pgalvVNiGD~L~~~TNG~~kS~~HRVv~~-----~~~~R~Si~~F~~P~~d 311 (357)
T PLN02216 240 ILLQVNEVEGLQIK-KDGKWVSVKPL--PNALVVNVGDILEIITNGTYRSIEHRGVVN-----SEKERLSVATFHNTGMG 311 (357)
T ss_pred EEEecCCCCceeEE-ECCEEEECCCC--CCeEEEEcchhhHhhcCCeeeccCceeecC-----CCCCEEEEEEEecCCCC
Confidence 99994 4999998 58999999998 999999999999999999999999999864 34789999999999999
Q ss_pred cEEecCcccccCCCCCCCCCCccHHHHHHHHHHhhc
Q 007796 340 AILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 340 avI~Plp~~vag~~~p~~y~pit~~df~~~r~~~~~ 375 (589)
++|.|+++++.+ +.|++|++++++||+..++....
T Consensus 312 ~~i~p~~~lv~~-~~p~~Y~~~t~~ey~~~~~~~~~ 346 (357)
T PLN02216 312 KEIGPAKSLVER-QKAALFKSLTTKEYFDGLFSREL 346 (357)
T ss_pred CeEeCcHHHcCC-CCCCCCCCcCHHHHHHHHHhccc
Confidence 999999999854 57899999999999998886543
No 9
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=2.7e-55 Score=465.80 Aligned_cols=268 Identities=19% Similarity=0.241 Sum_probs=226.6
Q ss_pred CCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC--------CCCC
Q 007796 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV--------GKGS 155 (589)
Q Consensus 84 ~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~--------~~~~ 155 (589)
....||+|||+.+.+++++++.+++++|.+||++||||||.||||+.++++++++.+++||+||.|+| ...+
T Consensus 44 ~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~ 123 (360)
T PLN03178 44 AGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAA 123 (360)
T ss_pred cCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCc
Confidence 35689999999998877778899999999999999999999999999999999999999999999882 1135
Q ss_pred cccccccC-----Cc------------CC-----CCCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhh
Q 007796 156 RGVYMYRA-----GR------------AL-----EDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHL 209 (589)
Q Consensus 156 rGyY~~~~-----ge------------~l-----ddWP~~-P---~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ 209 (589)
+|| .... +. +. .-||.. | +.+++|+++|.+++..||++||++|||++++|.++
T Consensus 124 ~Gy-~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~ 202 (360)
T PLN03178 124 QGY-GSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTPPDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKE 202 (360)
T ss_pred ccc-ccccccccccccchhHhhccccCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 673 2110 10 00 019876 3 89999999999999999999999999999999998
Q ss_pred hcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCCceEEccCCCCC
Q 007796 210 LDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAP 288 (589)
Q Consensus 210 ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~p 288 (589)
+... . +..+.+|++|||+++.++. . + |+++|||+|+||||+||. +||||+. +|+|++|+|. |
T Consensus 203 ~~~~-~---~~~~~lrl~~YP~~~~~~~--~---~-----g~~~HTD~g~lTlL~qd~v~GLQV~~-~g~Wi~V~p~--p 265 (360)
T PLN03178 203 VGGL-E---ELLLQMKINYYPRCPQPDL--A---L-----GVEAHTDVSALTFILHNMVPGLQVLY-EGKWVTAKCV--P 265 (360)
T ss_pred hcCc-c---cchhhhheeccCCCCCCcc--c---c-----CcCCccCCCceEEEeeCCCCceeEeE-CCEEEEcCCC--C
Confidence 8641 1 1235799999999875432 2 3 589999999999999986 9999995 7899999998 9
Q ss_pred CcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcE-EecCcccccCCCCCCCCCCccHHHHH
Q 007796 289 GDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAI-LDCSPIAAAGHVIPQSYVPISVSQFM 367 (589)
Q Consensus 289 g~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~Dav-I~Plp~~vag~~~p~~y~pit~~df~ 367 (589)
|++|||+||+|++||||+|+|++|||+.+ ...+||||+||++|+.|+. +.|+++++.. +.|++|++++++||+
T Consensus 266 g~lvVNiGD~L~~~TNG~~kSt~HRVv~~-----~~~~R~Si~~F~~P~~d~~v~~pl~~~v~~-~~p~~y~p~~~~eyl 339 (360)
T PLN03178 266 DSIVVHIGDTLEILSNGRYKSILHRGLVN-----KEKVRISWAVFCEPPKEKIILKPLPELVSK-EEPPKFPPRTFGQHV 339 (360)
T ss_pred CeEEEEccHHHHHHhCCccccccceeecC-----CCCCeEEEEEEecCCcccccccCcHHHcCC-CCcccCCCccHHHHH
Confidence 99999999999999999999999999864 3467999999999999975 6999999854 578999999999999
Q ss_pred HHHHHhhc
Q 007796 368 DDLSAEED 375 (589)
Q Consensus 368 ~~r~~~~~ 375 (589)
..++....
T Consensus 340 ~~~~~~~~ 347 (360)
T PLN03178 340 SHKLFKKP 347 (360)
T ss_pred HHHHhccc
Confidence 98887544
No 10
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=5.8e-55 Score=462.93 Aligned_cols=288 Identities=16% Similarity=0.190 Sum_probs=229.1
Q ss_pred CCccchhhccCCCCCCcccCCCCCCCCCCCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHH
Q 007796 54 RQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIM 133 (589)
Q Consensus 54 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell 133 (589)
.++|+.++-++|.+++ |. .....+.....||||||+.. .++++|.+||++||||+|.||||+.+++
T Consensus 28 ~~vp~~~v~p~~~~~~---~~--~~~~~~~~~~~iPvIDl~~~---------~~~~~l~~Ac~~~GFF~vvnHGI~~~l~ 93 (358)
T PLN02254 28 QTLPDSHVWTPKDDLL---FS--SAPSPSTTDESIPVIDLSDP---------NALTLIGHACETWGVFQVTNHGIPLSLL 93 (358)
T ss_pred ccCChhhcCChhhccC---cc--ccccccCcCCCCCeEeCCCH---------HHHHHHHHHHHHCCEEEEEcCCCCHHHH
Confidence 3577777776665521 11 01111123457999999742 3689999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccCC------CCCCcccccccC----------------CcCCC----CCCCCh----HHHHHHHHH
Q 007796 134 RCGLEAARLYFRTKSQTV------GKGSRGVYMYRA----------------GRALE----DWDSSP----PCMADIFRC 183 (589)
Q Consensus 134 ~~a~~~ar~FF~LP~Ee~------~~~~rGyY~~~~----------------ge~ld----dWP~~P----~~m~~y~~~ 183 (589)
+++++.+++||+||.|+| ...++||..... +.+.. -||..+ +.+++|+++
T Consensus 94 ~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~fr~~~~~Y~~~ 173 (358)
T PLN02254 94 DDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQKE 173 (358)
T ss_pred HHHHHHHHHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeecCccccchhhCCCCchHHHHHHHHHHHH
Confidence 999999999999999983 223456311100 00011 188764 799999999
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEE
Q 007796 184 MGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLI 263 (589)
Q Consensus 184 m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL 263 (589)
|.+|+++||++||++|||++++|.+++..... .+..+.+|++|||+++.++. . + |+++|||+|+||||
T Consensus 174 ~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~--~~~~~~lRl~~YPp~p~~~~--~---~-----G~~~HtD~g~lTiL 241 (358)
T PLN02254 174 MKKLAERLMWLMLGSLGITEEDIKWAGPKSGS--QGAQAALQLNSYPVCPDPDR--A---M-----GLAPHTDSSLLTIL 241 (358)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhhcccc--cCcceeEEEecCCCCCCccc--c---c-----CcCCccCCCcEEEE
Confidence 99999999999999999999999877632000 12236899999999985432 2 3 59999999999999
Q ss_pred ecCC-CccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEE
Q 007796 264 SSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAIL 342 (589)
Q Consensus 264 ~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI 342 (589)
+||. +||||++.+|+|++|+|. ||++|||+||+|++||||+|+|++|||+.+ ...+||||+||++|+.|++|
T Consensus 242 ~Qd~v~GLQV~~~~~~Wi~V~p~--pgalVVNiGD~lq~~SNg~~kS~~HRVv~~-----~~~~R~Sia~F~~P~~d~~i 314 (358)
T PLN02254 242 YQSNTSGLQVFREGVGWVTVPPV--PGSLVVNVGDLLHILSNGRFPSVLHRAVVN-----KTRHRISVAYFYGPPSDVQI 314 (358)
T ss_pred ecCCCCCceEECCCCEEEEcccC--CCCEEEEhHHHHHHHhCCeeccccceeecC-----CCCCEEEEEEEecCCCCcEE
Confidence 9995 999999876699999998 999999999999999999999999999874 34789999999999999999
Q ss_pred ecCcccccCCCCCCCCCCccHHHHHHHHHHhhc
Q 007796 343 DCSPIAAAGHVIPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 343 ~Plp~~vag~~~p~~y~pit~~df~~~r~~~~~ 375 (589)
.|+++++. ++.|++|++++++||+..++....
T Consensus 315 ~pl~~lv~-~~~p~~Y~~~t~~ey~~~~~~~~~ 346 (358)
T PLN02254 315 SPLPKLVD-PNHPPLYRSVTWKEYLATKAKHFN 346 (358)
T ss_pred eCcHHhcC-CCCCcccCCcCHHHHHHHHHHhhh
Confidence 99999985 457899999999999988875543
No 11
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=7.9e-55 Score=459.82 Aligned_cols=263 Identities=16% Similarity=0.195 Sum_probs=223.6
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCCC------CCCccc
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG------KGSRGV 158 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~~------~~~rGy 158 (589)
...||+|||+.+ ++.++++++++|.+||+++|||||.||||+.++++++++.+++||+||.|+|. ...+||
T Consensus 24 ~~~iPvIDls~~---~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY 100 (345)
T PLN02750 24 DEEIPVIDLSVS---TSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRDEVNPMGY 100 (345)
T ss_pred CCCCCeEECCCC---CcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccCc
Confidence 568999999985 33457889999999999999999999999999999999999999999998831 123563
Q ss_pred cc----------------ccCC--------cC--------CCCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 007796 159 YM----------------YRAG--------RA--------LEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLR 202 (589)
Q Consensus 159 Y~----------------~~~g--------e~--------lddWP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~ 202 (589)
+. .... .+ .+-||..| +.+++|++.|.+++..||++||++|||+
T Consensus 101 ~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 180 (345)
T PLN02750 101 HDSEHTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYARQVEKLAFKLLELISLSLGLP 180 (345)
T ss_pred CcccccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 21 0000 00 01288664 7999999999999999999999999999
Q ss_pred hhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEc-CCCceE
Q 007796 203 SDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCD-PNGRWY 280 (589)
Q Consensus 203 ~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~-~~G~Wi 280 (589)
+++|++++.+ + .+.+|++|||+++..+. . + ++++|||+|+||||+||. +||||++ .+|+|+
T Consensus 181 ~~~f~~~~~~-~------~~~lR~~~YPp~~~~~~--~---~-----g~~~HtD~g~lTlL~qd~v~GLQV~~~~~g~Wi 243 (345)
T PLN02750 181 ADRLNGYFKD-Q------ISFARFNHYPPCPAPHL--A---L-----GVGRHKDGGALTVLAQDDVGGLQISRRSDGEWI 243 (345)
T ss_pred HHHHHHHhcC-c------ceEEEEEecCCCCCccc--c---c-----CcCCCCCCCeEEEEecCCCCceEEeecCCCeEE
Confidence 9999999876 2 25899999999874321 2 3 589999999999999986 9999985 578999
Q ss_pred EccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCCC
Q 007796 281 LADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVP 360 (589)
Q Consensus 281 ~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~p 360 (589)
+|++. ||++|||+||+|++||||+|+||+|||+.+ .+.+||||+||++|+.|++|.|+++++.. +.|++|++
T Consensus 244 ~V~p~--pg~~vVNiGD~L~~~Tng~~~St~HRVv~~-----~~~~R~Si~~F~~P~~d~~i~pl~~~v~~-~~p~~y~p 315 (345)
T PLN02750 244 PVKPI--PDAFIINIGNCMQVWTNDLYWSAEHRVVVN-----SQKERFSIPFFFFPSHYVNIKPLDELINE-QNPPKYKE 315 (345)
T ss_pred EccCC--CCeEEEEhHHHHHHHhCCeeecccceeccC-----CCCCEEEEEEeecCCCCCeecCcHHhcCC-CCCCccCC
Confidence 99998 999999999999999999999999999974 35789999999999999999999999854 57899999
Q ss_pred ccHHHHHHHHHHhhc
Q 007796 361 ISVSQFMDDLSAEED 375 (589)
Q Consensus 361 it~~df~~~r~~~~~ 375 (589)
++++||+..++...+
T Consensus 316 ~~~~e~~~~~~~~~~ 330 (345)
T PLN02750 316 FNWGKFFASRNRSDY 330 (345)
T ss_pred ccHHHHHHHHHhccc
Confidence 999999998887765
No 12
>PLN02997 flavonol synthase
Probab=100.00 E-value=8.3e-55 Score=456.40 Aligned_cols=259 Identities=16% Similarity=0.191 Sum_probs=219.8
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC-----CCCCcccc
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-----GKGSRGVY 159 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~-----~~~~rGyY 159 (589)
...||+|||+.+ .+.+++++|.+||++||||||.||||+.++++++++.+++||+||.|+| ....+||.
T Consensus 30 ~~~IPvIDls~~------~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~GY~ 103 (325)
T PLN02997 30 AVDVPVVDLSVS------DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKEEDFEGYK 103 (325)
T ss_pred CCCCCeEECCCC------CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCccccC
Confidence 448999999975 2467899999999999999999999999999999999999999999983 22467842
Q ss_pred ccc-CCc------------CC-----CCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCC
Q 007796 160 MYR-AGR------------AL-----EDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPA 217 (589)
Q Consensus 160 ~~~-~ge------------~l-----ddWP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~ 217 (589)
... .+. +. .-||..| +.+++|++.|.+++.+||++||++|||++++|.+.+.+ +.
T Consensus 104 ~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~-~~-- 180 (325)
T PLN02997 104 RNYLGGINNWDEHLFHRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGG-ET-- 180 (325)
T ss_pred cccccCCCCccceeEeeecCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC-Cc--
Confidence 210 110 00 1188653 89999999999999999999999999999999998864 11
Q ss_pred CCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCCceEEccCCCCCCcEEEEch
Q 007796 218 NEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITG 296 (589)
Q Consensus 218 ~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvG 296 (589)
..+.+|++|||+++..+. . + ++++|||+|+||||+||. +||||+. +|+|++|+|. ||++|||+|
T Consensus 181 --~~~~lRl~~YP~~~~~~~--~---~-----g~~~HTD~g~lTlL~Qd~v~GLQV~~-~g~Wi~V~p~--pgalvVNiG 245 (325)
T PLN02997 181 --AEYVLRVNFYPPTQDTEL--V---I-----GAAAHSDMGAIALLIPNEVPGLQAFK-DEQWLDLNYI--NSAVVVIIG 245 (325)
T ss_pred --ccceeeeecCCCCCCccc--c---c-----CccCccCCCceEEEecCCCCCEEEeE-CCcEEECCCC--CCeEEEEec
Confidence 125899999999875322 2 3 589999999999999986 9999995 7899999998 999999999
Q ss_pred hhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCCCccHHHHHHHHHHh
Q 007796 297 KALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE 373 (589)
Q Consensus 297 D~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~~ 373 (589)
|+|++||||+|+|++|||+.+ ....|||++||++|+.|++|.|+++++.+ +.|++|++++++||+..++.+
T Consensus 246 D~Le~~TNG~~kSt~HRVv~~-----~~~~R~Si~fF~~P~~d~~i~Plp~~v~~-~~p~~y~~~~~~e~l~~r~~~ 316 (325)
T PLN02997 246 DQLMRMTNGRFKNVLHRAKTD-----KERLRISWPVFVAPRADMSVGPLPELTGD-ENPPKFETLIYNDYIDQKIRG 316 (325)
T ss_pred hHHHHHhCCccccccceeeCC-----CCCCEEEEEEEecCCCCCeEeCChHHcCC-CCCCcCCCccHHHHHHHHHhh
Confidence 999999999999999999874 34689999999999999999999999854 578999999999999998764
No 13
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=7.6e-55 Score=462.01 Aligned_cols=265 Identities=15% Similarity=0.159 Sum_probs=222.7
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCCC------CCCccc
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG------KGSRGV 158 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~~------~~~rGy 158 (589)
...||+|||+.+.++ ++++.+++++|.+||++||||||.||||+.++++++++.+++||+||.|+|. ...+||
T Consensus 35 ~~~iPvIDls~~~~~-~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy 113 (358)
T PLN02515 35 SDEIPVISLAGIDEV-GGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLARDFFALPAEEKLRFDMSGGKKGGF 113 (358)
T ss_pred CCCCCEEEChhccCC-chHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhCcCCCCccCc
Confidence 347999999998653 4568889999999999999999999999999999999999999999998831 224674
Q ss_pred cccc--CC--------------cCC-----CCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCC
Q 007796 159 YMYR--AG--------------RAL-----EDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDT 213 (589)
Q Consensus 159 Y~~~--~g--------------e~l-----ddWP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~ 213 (589)
.... .+ .+. ..||..| +.+++|+++|.+|++.||++||++|||++++|.+++..
T Consensus 114 ~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~~~~~- 192 (358)
T PLN02515 114 IVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTKACVD- 192 (358)
T ss_pred ccccccccccccCceeeeccccCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhhcC-
Confidence 2110 00 000 0198764 89999999999999999999999999999999988755
Q ss_pred CCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCC-ceEEccCCCCCCcE
Q 007796 214 PLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNG-RWYLADGGSAPGDL 291 (589)
Q Consensus 214 pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G-~Wi~Vpp~~~pg~l 291 (589)
+ .+.+|++|||+++.++. . + |+++|||+|+||||+||. +||||++.+| +|++|+|. ||++
T Consensus 193 ~------~~~lrl~~YP~~~~~~~--~---~-----G~~~HTD~g~lTlL~Qd~v~GLQV~~~~~~~Wi~Vpp~--pgal 254 (358)
T PLN02515 193 M------DQKVVVNYYPKCPQPDL--T---L-----GLKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQPV--EGAF 254 (358)
T ss_pred c------cceEEEeecCCCCChhh--c---c-----CCCCCCCCCeEEEEecCCCCceEEEECCCCeEEECCCC--CCeE
Confidence 2 24799999999864322 1 3 589999999999999996 9999987655 79999998 9999
Q ss_pred EEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCCCccHHHHHHHHH
Q 007796 292 LLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLS 371 (589)
Q Consensus 292 VVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~ 371 (589)
|||+||+|++||||+|+|++|||+.+ ...+||||+||++|+.|++|.|++ ++. .+.|++|++++++||+..++
T Consensus 255 VVNiGD~L~~~TNG~~kSt~HRVv~~-----~~~~R~Si~~F~~P~~d~~i~Pl~-~~~-~~~p~~y~~~t~~eyl~~~~ 327 (358)
T PLN02515 255 VVNLGDHGHYLSNGRFKNADHQAVVN-----SNCSRLSIATFQNPAPDATVYPLK-VRE-GEKPILEEPITFAEMYRRKM 327 (358)
T ss_pred EEEccHHHHHHhCCeeeeecceEECC-----CCCCEEEEEEEecCCCCCEEECCC-cCC-CCCCCcCCCcCHHHHHHHHH
Confidence 99999999999999999999999864 346899999999999999999997 443 34789999999999999998
Q ss_pred Hhhcc
Q 007796 372 AEEDG 376 (589)
Q Consensus 372 ~~~~~ 376 (589)
...+.
T Consensus 328 ~~~~~ 332 (358)
T PLN02515 328 SRDLE 332 (358)
T ss_pred hcccc
Confidence 77664
No 14
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=8.4e-55 Score=462.36 Aligned_cols=293 Identities=14% Similarity=0.138 Sum_probs=239.7
Q ss_pred CCCCccchhhccCCCCCCcccCCCCCCCCCCCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHH
Q 007796 52 APRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAA 131 (589)
Q Consensus 52 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~e 131 (589)
...++|..++-+++.++..- . .....+.+.||+|||+.+.++++++|.+++++|.+||++||||+|.||||+.+
T Consensus 22 ~~~~~p~~~~~~~~~~~~~~----~--~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~ 95 (362)
T PLN02393 22 GLPTIPDRYVKPPSQRPNSS----N--TTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNHGVRPE 95 (362)
T ss_pred CCCcCCHHHcCCchhccccc----c--ccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCCHH
Confidence 45677777777766653110 0 01123457899999999987777788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCC------CCCCcccccccCC---cC---------------CC---CCCCCh----HHHHHH
Q 007796 132 IMRCGLEAARLYFRTKSQTV------GKGSRGVYMYRAG---RA---------------LE---DWDSSP----PCMADI 180 (589)
Q Consensus 132 ll~~a~~~ar~FF~LP~Ee~------~~~~rGyY~~~~g---e~---------------ld---dWP~~P----~~m~~y 180 (589)
+++++++.+++||+||.|+| ...++||...... .. .. .||..| +.+.+|
T Consensus 96 li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y 175 (362)
T PLN02393 96 LMDRAREAWREFFHLPLEVKQRYANSPATYEGYGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLPPSCRELIEEY 175 (362)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhhcccCcccccccccccccccccCchhheeeeecCccccchhhCcccchHHHHHHHHH
Confidence 99999999999999999883 2235784221110 00 01 298764 799999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceE
Q 007796 181 FRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLL 260 (589)
Q Consensus 181 ~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlL 260 (589)
+++|.+++..||++||++|||++++|.+++... . ...+.+|++|||+++..+. . + ++++|||+|+|
T Consensus 176 ~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~-~---~~~~~lRl~~YP~~p~~~~--~---~-----g~~~HtD~g~l 241 (362)
T PLN02393 176 GEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGE-D---GVGACLRVNYYPKCPQPDL--T---L-----GLSPHSDPGGM 241 (362)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCC-c---cccceeeeeecCCCCCccc--c---c-----ccccccCCceE
Confidence 999999999999999999999999999988652 1 1235899999999875432 1 3 58999999999
Q ss_pred EEEecC-C-CccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCC
Q 007796 261 TLISSD-S-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQG 338 (589)
Q Consensus 261 TLL~qD-~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~ 338 (589)
|||+|| . +||||+ .+|+|++|++. ||++|||+||+|++||||+|+|++|||+.+ ...+|||++||++|+.
T Consensus 242 TlL~q~~~v~GLQV~-~~g~W~~V~p~--pgalVVNiGD~l~~~Tng~~kSt~HRVv~~-----~~~~R~SiafF~~P~~ 313 (362)
T PLN02393 242 TILLPDDNVAGLQVR-RDDAWITVKPV--PDAFIVNIGDQIQVLSNAIYKSVEHRVIVN-----SAKERVSLAFFYNPKS 313 (362)
T ss_pred EEEeeCCCCCcceee-ECCEEEECCCC--CCeEEEEcchhhHhhcCCeeeccceecccC-----CCCCEEEEEEEecCCC
Confidence 999984 4 999999 68999999998 999999999999999999999999999874 3468999999999999
Q ss_pred CcEEecCcccccCCCCCCCCCCccHHHHHHHHHHh
Q 007796 339 NAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE 373 (589)
Q Consensus 339 DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~~ 373 (589)
|++|.|+++++.+ +.|++|++++++||+......
T Consensus 314 d~~i~pl~~~v~~-~~p~~y~~~~~~ey~~~~~~~ 347 (362)
T PLN02393 314 DLPIEPLKELVTP-DRPALYPPMTFDEYRLFIRTK 347 (362)
T ss_pred CceEeCcHHhcCC-CCCCCCCCccHHHHHHHHHhc
Confidence 9999999999853 578999999999998776644
No 15
>PLN02704 flavonol synthase
Probab=100.00 E-value=8.5e-55 Score=457.92 Aligned_cols=281 Identities=13% Similarity=0.172 Sum_probs=228.8
Q ss_pred CCCccchhhccCCCCCCcccCCCCCCCCCCCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHH
Q 007796 53 PRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAI 132 (589)
Q Consensus 53 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~el 132 (589)
...+|..++-++..+ |.+. ....+...||+|||+.. .+.+++++|.+||+++|||+|.||||+.++
T Consensus 16 ~~~~p~~~~~~~~~~-p~~~-------~~~~~~~~iPvIDls~~------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l 81 (335)
T PLN02704 16 KETIPEEFIRSEKEQ-PAIT-------TFHGVDPQVPTIDLSDP------DEEKLTRLIAEASKEWGMFQIVNHGIPSEV 81 (335)
T ss_pred cCCCCHHHcCCcccc-cccc-------cccccCCCCCeEECCCc------cHHHHHHHHHHHHHHcCEEEEEcCCCCHHH
Confidence 446777676666554 2211 11223568999999964 245789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccCC--------CCCCcccccccC-----Cc-----C-------CC-----CCCCCh----HHHH
Q 007796 133 MRCGLEAARLYFRTKSQTV--------GKGSRGVYMYRA-----GR-----A-------LE-----DWDSSP----PCMA 178 (589)
Q Consensus 133 l~~a~~~ar~FF~LP~Ee~--------~~~~rGyY~~~~-----ge-----~-------ld-----dWP~~P----~~m~ 178 (589)
++++++.+++||+||.|+| ...++|| .... +. . .. .||..+ +.+.
T Consensus 82 ~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy-~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr~~~~ 160 (335)
T PLN02704 82 ISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGY-GTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYREVNE 160 (335)
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhccCCCcccccc-cccccccccCcccceeeeEeeecCCcccchhhCccccchhHHHHH
Confidence 9999999999999999883 1135784 2211 10 0 00 177653 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCc
Q 007796 179 DIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKG 258 (589)
Q Consensus 179 ~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~G 258 (589)
+|++.|.+++.+||++||++|||++++|.+++.... ..+.+|++|||+++..+. . + ++++|||+|
T Consensus 161 ~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~-----~~~~lrl~~YP~~~~~~~--~---~-----g~~~HtD~g 225 (335)
T PLN02704 161 EYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGEE-----LEYLLKINYYPPCPRPDL--A---L-----GVVAHTDMS 225 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCc-----hhhhhhhhcCCCCCCccc--c---c-----CccCccCCc
Confidence 999999999999999999999999999998875411 124799999999874322 2 3 489999999
Q ss_pred eEEEEecCC-CccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecC
Q 007796 259 LLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQ 337 (589)
Q Consensus 259 lLTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~ 337 (589)
+||||+||. +||||+ .+|+|++|+|. ||++|||+||+|++||||+|+|++|||+.+ ...+||||+||++|+
T Consensus 226 ~lTlL~qd~v~GLQV~-~~g~Wi~V~p~--pg~lvVNvGD~L~~~TNg~~kSt~HRVv~~-----~~~~R~Si~~F~~p~ 297 (335)
T PLN02704 226 AITILVPNEVQGLQVF-RDDHWFDVKYI--PNALVIHIGDQIEILSNGKYKSVLHRTTVN-----KEKTRMSWPVFLEPP 297 (335)
T ss_pred ceEEEecCCCCceeEe-ECCEEEeCCCC--CCeEEEEechHHHHHhCCeeecccceeecC-----CCCCeEEEEEEecCC
Confidence 999999986 999998 47899999998 999999999999999999999999999874 347899999999999
Q ss_pred CCcEEecCcccccCCCCCCCCCCccHHHHHHHHHH
Q 007796 338 GNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSA 372 (589)
Q Consensus 338 ~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~ 372 (589)
.|++|.|+++++.. ++|++|++++++||+..++.
T Consensus 298 ~d~~i~pl~~~~~~-~~p~~Y~~~~~~e~~~~~~~ 331 (335)
T PLN02704 298 SELAVGPLPKLINE-DNPPKFKTKKFKDYVYCKLN 331 (335)
T ss_pred CCceEeCChHhcCC-CCCccCCCCCHHHHHHHHHh
Confidence 99999999999854 57899999999999988876
No 16
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=3.6e-54 Score=450.91 Aligned_cols=265 Identities=15% Similarity=0.176 Sum_probs=221.6
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCCC---CCCcccccc
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG---KGSRGVYMY 161 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~~---~~~rGyY~~ 161 (589)
++.||+|||+.+.. +++.+++++|.+||++||||||.||||+.++++++++.+++||+||.|++. ...+|| ..
T Consensus 4 ~~~iPvIDls~~~~---~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~gy-~~ 79 (321)
T PLN02299 4 MESFPVIDMEKLNG---EERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVASKGL-EG 79 (321)
T ss_pred CCCCCEEECcCCCc---ccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccCCCCc-cc
Confidence 67899999998842 356778999999999999999999999999999999999999999998832 123563 21
Q ss_pred cCCc---------------C---CCCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCC
Q 007796 162 RAGR---------------A---LEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANE 219 (589)
Q Consensus 162 ~~ge---------------~---lddWP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e 219 (589)
...+ + ...||..| +.+++|++.|.+++.+||++||++|||++++|.+++.+. ..
T Consensus 80 ~~~~~~~~d~ke~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~----~~ 155 (321)
T PLN02299 80 VQTEVEDLDWESTFFLRHLPESNLADIPDLDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGS----KG 155 (321)
T ss_pred ccccCCCcCHHHHcccccCCccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC----CC
Confidence 1110 0 01288764 899999999999999999999999999999999887531 01
Q ss_pred ccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecC--CCccceEcCCCceEEccCCCCCCcEEEEchh
Q 007796 220 VSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD--SPGLQVCDPNGRWYLADGGSAPGDLLLITGK 297 (589)
Q Consensus 220 ~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD--~~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD 297 (589)
..+.+|++|||+++..+. . + ++++|||+|+||||+|| .+||||+ .+|+|++|+|. ||++|||+||
T Consensus 156 ~~~~lRl~~YPp~~~~~~--~---~-----G~~~HTD~g~lTlL~qd~~v~GLQV~-~~g~Wi~V~p~--pg~lvVNiGD 222 (321)
T PLN02299 156 PTFGTKVSNYPPCPKPDL--V---K-----GLRAHTDAGGIILLFQDDKVSGLQLL-KDGEWVDVPPM--RHSIVVNLGD 222 (321)
T ss_pred ccceeeeEecCCCCCccc--c---c-----CccCccCCCeEEEEEecCCCCCcCcc-cCCeEEECCCC--CCeEEEEeCH
Confidence 234799999999875432 1 3 48899999999999996 4999998 58999999998 9999999999
Q ss_pred hhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCC-CCCCCCCCccHHHHHHHHHHhhc
Q 007796 298 ALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGH-VIPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 298 ~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~-~~p~~y~pit~~df~~~r~~~~~ 375 (589)
+|++||||+|+|+.|||+.+ ...+|||++||++|+.|++|.|+++++..+ ..|.+|++++++||+..++++..
T Consensus 223 ~l~~~Tng~~kS~~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~pl~~~v~~~~~~p~~y~p~~~~e~l~~~~~~~~ 296 (321)
T PLN02299 223 QLEVITNGKYKSVMHRVVAQ-----TDGNRMSIASFYNPGSDAVIYPAPALVEKEAEEEQVYPKFVFEDYMKLYAGLKF 296 (321)
T ss_pred HHHHHhCCceecccceeecC-----CCCCEEEEEEEecCCCCceEeCchHhcCcccCCCcCCCCCcHHHHHHHHHHccc
Confidence 99999999999999999974 246899999999999999999999998543 25799999999999998887644
No 17
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.8e-54 Score=452.56 Aligned_cols=282 Identities=16% Similarity=0.212 Sum_probs=228.2
Q ss_pred CCCccchhhccCCCCCCcccCCCCCCCCCCCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHH
Q 007796 53 PRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAI 132 (589)
Q Consensus 53 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~el 132 (589)
+.++|+.++.+++.++.. + .......||+|||+.. ++.+++++|.+||++||||||.||||+.++
T Consensus 12 ~~~~p~~~~~~~~~~p~~-~--------~~~~~~~iPvIDls~~------~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l 76 (337)
T PLN02639 12 HTTLPESYVRPESERPRL-S--------EVSTCENVPVIDLGSP------DRAQVVQQIGDACRRYGFFQVINHGVSAEL 76 (337)
T ss_pred cCcCCHHhcCCchhcccc-c--------ccccCCCCCeEECCCc------cHHHHHHHHHHHHHhCCEEEEEcCCCCHHH
Confidence 356666666666544210 0 0123467999999853 467899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccCCCC-------CCccccccc----CC------------cC----CCCCCCCh----HHHHHHH
Q 007796 133 MRCGLEAARLYFRTKSQTVGK-------GSRGVYMYR----AG------------RA----LEDWDSSP----PCMADIF 181 (589)
Q Consensus 133 l~~a~~~ar~FF~LP~Ee~~~-------~~rGyY~~~----~g------------e~----lddWP~~P----~~m~~y~ 181 (589)
++++++.+++||+||.|+|.. ...++|... .+ .+ ...||..| +.+++|+
T Consensus 77 ~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~~~~~n~wP~~~~~fr~~~~~y~ 156 (337)
T PLN02639 77 VEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNVRKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFKEIVSTYC 156 (337)
T ss_pred HHHHHHHHHHHhcCCHHHHhhhhccCCCCccccccccccccCcccCchheEEeeecCCcccchhCcccchHHHHHHHHHH
Confidence 999999999999999987321 011112110 00 00 11288654 8999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEE
Q 007796 182 RCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLT 261 (589)
Q Consensus 182 ~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLT 261 (589)
++|.+++.+||++||++|||++++|.+++.+ + .+.+|++|||+++..+. . + |+++|||+|+||
T Consensus 157 ~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~------~~~lrl~~YP~~~~~~~--~---~-----g~~~HTD~g~lT 219 (337)
T PLN02639 157 REVRELGFRLQEAISESLGLEKDYIKNVLGE-Q------GQHMAVNYYPPCPEPEL--T---Y-----GLPAHTDPNALT 219 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhCC-C------ccEEEEEcCCCCCCccc--c---c-----CCCCCcCCCceE
Confidence 9999999999999999999999999988765 2 25899999999875322 2 3 489999999999
Q ss_pred EEecC--CCccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCC
Q 007796 262 LISSD--SPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGN 339 (589)
Q Consensus 262 LL~qD--~~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~D 339 (589)
||+|| .+||||+. +|+|++|+|. ||++|||+||+|++||||+|+|++|||+.+ +..+|||++||++|+.|
T Consensus 220 lL~qd~~v~GLQV~~-~g~Wi~V~p~--pg~lVVNiGD~L~~~TNG~~kSt~HRVv~~-----~~~~R~Sia~F~~p~~d 291 (337)
T PLN02639 220 ILLQDQQVAGLQVLK-DGKWVAVNPH--PGAFVINIGDQLQALSNGRYKSVWHRAVVN-----TDKERMSVASFLCPCDD 291 (337)
T ss_pred EEEecCCcCceEeec-CCeEEeccCC--CCeEEEechhHHHHHhCCeeeccCcccccC-----CCCCEEEEEEEecCCCC
Confidence 99997 39999994 7899999998 999999999999999999999999999864 34789999999999999
Q ss_pred cEEecCcccccCCCCCCCCCCccHHHHHHHHHHhhc
Q 007796 340 AILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 340 avI~Plp~~vag~~~p~~y~pit~~df~~~r~~~~~ 375 (589)
++|.|+++++.+ +.|++|++++++||+..++....
T Consensus 292 ~~i~pl~~~~~~-~~p~~y~p~~~~e~~~~~~~~~~ 326 (337)
T PLN02639 292 AVISPAKKLTDD-GTAAVYRDFTYAEYYKKFWSRNL 326 (337)
T ss_pred ceEeCchHHcCC-CCCCCCCCCCHHHHHHHHHhccC
Confidence 999999999853 57899999999999988876543
No 18
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.6e-54 Score=452.77 Aligned_cols=261 Identities=20% Similarity=0.315 Sum_probs=220.0
Q ss_pred CCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC-----CCCCcc
Q 007796 83 TMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-----GKGSRG 157 (589)
Q Consensus 83 ~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~-----~~~~rG 157 (589)
+....||+|||+.. .+..++++|.+||+++|||||.||||+.++++++++.+++||+||.|+| ....+|
T Consensus 10 ~~~~~iP~IDl~~~------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~G 83 (332)
T PLN03002 10 MKVSSLNCIDLAND------DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRG 83 (332)
T ss_pred CCCCCCCEEeCCch------hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCC
Confidence 34678999999942 3557899999999999999999999999999999999999999999883 233567
Q ss_pred cccccCCc----------------------CC------------CCCCCC---h---HHHHHHHHHHHHHHHHHHHHHHH
Q 007796 158 VYMYRAGR----------------------AL------------EDWDSS---P---PCMADIFRCMGKAARAALFAIAR 197 (589)
Q Consensus 158 yY~~~~ge----------------------~l------------ddWP~~---P---~~m~~y~~~m~kla~~LL~aIA~ 197 (589)
|.....+ +. ..||.. | +.+++|+++|.+|+..||++||+
T Consensus 84 -Y~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~ 162 (332)
T PLN03002 84 -YTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLAL 162 (332)
T ss_pred -cCcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321000 00 118864 4 79999999999999999999999
Q ss_pred hCCCChhHHhh--hhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEc
Q 007796 198 HLRLRSDVFNH--LLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCD 274 (589)
Q Consensus 198 ~LGL~~~~F~~--~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~ 274 (589)
+|||++++|.+ ++++ + .+.+|++|||+++.... .. .++++|||+|+||||+||. +||||++
T Consensus 163 ~Lgl~~~~f~~~~~~~~-~------~~~lrl~~YP~~~~~~~-~~--------~g~~~HTD~g~lTlL~qd~v~GLQV~~ 226 (332)
T PLN03002 163 ALDLDVGYFDRTEMLGK-P------IATMRLLRYQGISDPSK-GI--------YACGAHSDFGMMTLLATDGVMGLQICK 226 (332)
T ss_pred HcCCChHHhccccccCC-C------chheeeeeCCCCCCccc-Cc--------cccccccCCCeEEEEeeCCCCceEEec
Confidence 99999999986 4443 2 35899999999864321 12 3589999999999999995 9999986
Q ss_pred C----CCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCccccc
Q 007796 275 P----NGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAA 350 (589)
Q Consensus 275 ~----~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~va 350 (589)
. +|+|++|+|. ||++|||+||+|++||||+|+|++|||+.+ ..+||||+||++|+.|++|.|+++++.
T Consensus 227 ~~~~~~g~Wi~Vpp~--pg~~VVNiGD~L~~wTng~~kSt~HRVv~~------~~~R~Sia~F~~p~~d~~i~pl~~~~~ 298 (332)
T PLN03002 227 DKNAMPQKWEYVPPI--KGAFIVNLGDMLERWSNGFFKSTLHRVLGN------GQERYSIPFFVEPNHDCLVECLPTCKS 298 (332)
T ss_pred CCCCCCCcEEECCCC--CCeEEEEHHHHHHHHhCCeeECcCCeecCC------CCCeeEEEEEecCCCCeeEecCCcccC
Confidence 4 3689999998 999999999999999999999999999863 357999999999999999999999984
Q ss_pred CCCCCCCCCCccHHHHHHHHHHhhc
Q 007796 351 GHVIPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 351 g~~~p~~y~pit~~df~~~r~~~~~ 375 (589)
++.|.+|++++++||+..++...+
T Consensus 299 -~~~p~~y~~~~~~e~l~~~~~~~~ 322 (332)
T PLN03002 299 -ESDLPKYPPIKCSTYLTQRYEETH 322 (332)
T ss_pred -CCCcccCCCccHHHHHHHHHHHHh
Confidence 467899999999999999998877
No 19
>PLN02947 oxidoreductase
Probab=100.00 E-value=4.5e-54 Score=458.43 Aligned_cols=289 Identities=17% Similarity=0.193 Sum_probs=232.0
Q ss_pred cCCCCccchhhccCCCCCCcccCCCCCCCCC-CCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCC
Q 007796 51 HAPRQAIPIAAAADHAIGPVVVPISVEPPVA-TTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSED 129 (589)
Q Consensus 51 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~-~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~ 129 (589)
....++|+.++-+++.++. ....... +.....||+|||+.+.+ ..+..++++|.+||++||||+|.||||+
T Consensus 34 ~~~~~vp~~yv~p~~~~~~-----~~~~~~~~~~~~~~iPvIDls~l~~---~~~~~~~~~l~~Ac~~~GFF~v~nHGIp 105 (374)
T PLN02947 34 SGITKVPAKYILPASDRPG-----LTRDEAIAASGNLKLPVIDLAELRG---SNRPHVLATLAAACREYGFFQVVNHGVP 105 (374)
T ss_pred cCCCcCCHHhcCCchhccc-----cccccccccCCCCCCCeEECcccCC---ccHHHHHHHHHHHHHHCcEEEEEcCCCC
Confidence 3456888877776665521 1110011 12356799999998864 3467889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccCCCC-------CCcccccccC----C------------cCCC----CCCCCh----HHHH
Q 007796 130 AAIMRCGLEAARLYFRTKSQTVGK-------GSRGVYMYRA----G------------RALE----DWDSSP----PCMA 178 (589)
Q Consensus 130 ~ell~~a~~~ar~FF~LP~Ee~~~-------~~rGyY~~~~----g------------e~ld----dWP~~P----~~m~ 178 (589)
.++++++++.+++||+||.|++.. ...||+.... + .+.. -||..| +.++
T Consensus 106 ~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr~~~~ 185 (374)
T PLN02947 106 SEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLRKVAA 185 (374)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCccchHHHHHHHH
Confidence 999999999999999999988311 1234321100 0 0111 188765 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC---hhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcc
Q 007796 179 DIFRCMGKAARAALFAIARHLRLR---SDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEV 255 (589)
Q Consensus 179 ~y~~~m~kla~~LL~aIA~~LGL~---~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HT 255 (589)
+|+++|.+|+..||++||++|||+ .++|.+.+.+ + .+.+|++|||+++.++. . + |+++||
T Consensus 186 ~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~-~------~~~lrln~YPp~p~~~~--~---~-----G~~~HT 248 (374)
T PLN02947 186 TYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEA-G------SQMMVVNCYPACPEPEL--T---L-----GMPPHS 248 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcC-c------ceeeeeecCCCCCCccc--c---c-----CCCCcc
Confidence 999999999999999999999997 4567666644 2 35899999999975432 1 3 599999
Q ss_pred cCceEEEEecCC-CccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEee
Q 007796 256 EKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRL 334 (589)
Q Consensus 256 D~GlLTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~ 334 (589)
|+|+||||+||. +||||++ +|+|++|+|. ||++|||+||+|++||||+|+|++|||+.+ ...+||||+||+
T Consensus 249 D~g~lTlL~Qd~v~GLQV~~-~g~Wi~V~p~--pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~-----~~~~R~Sia~F~ 320 (374)
T PLN02947 249 DYGFLTLLLQDEVEGLQIMH-AGRWVTVEPI--PGSFVVNVGDHLEIFSNGRYKSVLHRVRVN-----STKPRISVASLH 320 (374)
T ss_pred CCCceEEEEecCCCCeeEeE-CCEEEeCCCC--CCeEEEEeCceeeeeeCCEEeccccccccC-----CCCCEEEEEEEe
Confidence 999999999986 9999997 8999999998 999999999999999999999999999864 357899999999
Q ss_pred ecCCCcEEecCcccccCCCCCCCCCCccHHHHHHHHHHh
Q 007796 335 MPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE 373 (589)
Q Consensus 335 ~P~~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~~ 373 (589)
.|+.|++|.|+++++. ++.|++|++++++||+......
T Consensus 321 ~P~~d~~i~Pl~~lv~-~~~p~~Y~~~~~~ey~~~~~~~ 358 (374)
T PLN02947 321 SLPFERVVGPAPELVD-EQNPRRYMDTDFATFLAYLASA 358 (374)
T ss_pred cCCCCCEEeCChHhcC-CCCCCcCCCCCHHHHHHHHHHh
Confidence 9999999999999985 4579999999999999887654
No 20
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=2.7e-53 Score=446.53 Aligned_cols=260 Identities=14% Similarity=0.168 Sum_probs=216.6
Q ss_pred CCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCCC----CCCcccccc
Q 007796 86 PRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG----KGSRGVYMY 161 (589)
Q Consensus 86 a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~~----~~~rGyY~~ 161 (589)
..||+|||+.. +..++|.+||++||||+|.||||+.++++++++.+++||+||.|+|. ....|| ..
T Consensus 25 ~~iPvIDls~~---------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~Gy-~~ 94 (335)
T PLN02156 25 VLIPVIDLTDS---------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPPDPFGY-GT 94 (335)
T ss_pred CCCCcccCCCh---------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCCCCccc-Cc
Confidence 36999999831 23678999999999999999999999999999999999999998832 223463 21
Q ss_pred c-CC-c--------------C-------CCCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCC-hhHHhhhhcCC
Q 007796 162 R-AG-R--------------A-------LEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLR-SDVFNHLLDDT 213 (589)
Q Consensus 162 ~-~g-e--------------~-------lddWP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~-~~~F~~~ld~~ 213 (589)
. .+ . . ..-||..| +.+++|+++|.+++.+||++||++||++ +++|.+++.+.
T Consensus 95 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~~ 174 (335)
T PLN02156 95 KRIGPNGDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVK 174 (335)
T ss_pred cccCCCCCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcCC
Confidence 0 00 0 0 00187654 7899999999999999999999999997 47898887541
Q ss_pred CCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCCceEEccCCCCCCcEE
Q 007796 214 PLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLL 292 (589)
Q Consensus 214 pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lV 292 (589)
+..+.+|++|||+++..+.... .|+++|||+|+||||+||. +||||+..+|+|++|+|. ||++|
T Consensus 175 -----~~~~~lRl~~YP~~~~~~~~~~--------~g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp~--pga~V 239 (335)
T PLN02156 175 -----ESDSCLRMNHYPEKEETPEKVE--------IGFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPD--HSSFF 239 (335)
T ss_pred -----CccceEeEEeCCCCCCCccccc--------cCCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccCC--CCcEE
Confidence 1236899999999874322212 3589999999999999986 999999888999999998 99999
Q ss_pred EEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCCCccHHHHHHHHHH
Q 007796 293 LITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSA 372 (589)
Q Consensus 293 VNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~ 372 (589)
||+||+|++||||+|+|+.|||+.+ ...+||||+||+.|+.|++|.|++.++.+ +.|++|++++++||+..++.
T Consensus 240 VNiGD~l~~wTNg~~kSt~HRVv~~-----~~~~R~SiafF~~P~~d~~i~pl~~~v~~-~~p~~y~p~~~~ey~~~~~~ 313 (335)
T PLN02156 240 VLVGDTLQVMTNGRFKSVKHRVVTN-----TKRSRISMIYFAGPPLSEKIAPLSCLVPK-QDDCLYNEFTWSQYKLSAYK 313 (335)
T ss_pred EEhHHHHHHHhCCeeeccceeeecC-----CCCCEEEEEEeecCCCCCEEeCChHhcCC-CCCccCCCccHHHHHHHHHh
Confidence 9999999999999999999999964 34689999999999999999999999854 57899999999999999998
Q ss_pred hhcc
Q 007796 373 EEDG 376 (589)
Q Consensus 373 ~~~~ 376 (589)
..+.
T Consensus 314 ~~~~ 317 (335)
T PLN02156 314 TKLG 317 (335)
T ss_pred ccCC
Confidence 7663
No 21
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.7e-53 Score=447.70 Aligned_cols=257 Identities=15% Similarity=0.204 Sum_probs=214.9
Q ss_pred CCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC------CCCCcc
Q 007796 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV------GKGSRG 157 (589)
Q Consensus 84 ~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~------~~~~rG 157 (589)
+.+.||+|||+.+.++++..+ +.+++|.+||+++|||+|.||||+.++++++++.+++||+||.|+| ...++|
T Consensus 41 ~~~~IPvIDls~~~~~~~~~~-~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~G 119 (348)
T PLN00417 41 PEMDIPAIDLSLLLSSSDDGR-EELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQG 119 (348)
T ss_pred cCCCCCeEEChhhcCCCchHH-HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCccc
Confidence 467899999999876555444 4569999999999999999999999999999999999999999982 123567
Q ss_pred cccccC----C------cCC-------C-----CCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhc
Q 007796 158 VYMYRA----G------RAL-------E-----DWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLD 211 (589)
Q Consensus 158 yY~~~~----g------e~l-------d-----dWP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld 211 (589)
| .... . +.. + -||..| +.+++|+.+|.+++..||++||++|||++++|.+++.
T Consensus 120 Y-~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~ 198 (348)
T PLN00417 120 Y-GNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMARSLELEENCFLEMYG 198 (348)
T ss_pred c-ccccccccCCCcCccceeecccCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 3 2210 0 100 0 188764 8999999999999999999999999999999998876
Q ss_pred CCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecC--CCccceEcCCCceEEccCCCCCC
Q 007796 212 DTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD--SPGLQVCDPNGRWYLADGGSAPG 289 (589)
Q Consensus 212 ~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD--~~GLQV~~~~G~Wi~Vpp~~~pg 289 (589)
+.. .+.+|++|||+++..+. . .|+++|||+|+||||+|| .+||||+ .+|+|++|++. ||
T Consensus 199 ~~~------~~~lRl~~YPp~~~~~~--~--------~g~~~HTD~g~lTlL~qd~~v~GLQV~-~~g~Wi~V~p~--pg 259 (348)
T PLN00417 199 ENA------TMDTRFNMYPPCPRPDK--V--------IGVKPHADGSAFTLLLPDKDVEGLQFL-KDGKWYKAPIV--PD 259 (348)
T ss_pred cCc------cceeeeeecCCCCCccc--c--------cCCcCccCCCceEEEEecCCCCceeEe-ECCeEEECCCC--CC
Confidence 521 24699999999875432 1 358999999999999996 4999998 57999999998 99
Q ss_pred cEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCCCccHHHHH
Q 007796 290 DLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFM 367 (589)
Q Consensus 290 ~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~pit~~df~ 367 (589)
++|||+||+|++||||+|+|++|||+.+ ...+|||++||++|+.|++|+|+++++. +++|++|++++++...
T Consensus 260 ~lVVNiGD~Le~~Tng~~kSt~HRVv~~-----~~~~R~Si~fF~~P~~d~~i~pl~~~v~-~~~p~~Y~~~~~~~~~ 331 (348)
T PLN00417 260 TILINVGDQMEIMSNGIYKSPVHRVVTN-----REKERISVATFCIPGADKEIQPVDGLVS-EARPRLYKTVKKYVEL 331 (348)
T ss_pred cEEEEcChHHHHHhCCeecccceEEecC-----CCCCEEEEEEEecCCCCceecCchHhcC-CCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999974 3468999999999999999999999984 4589999999954433
No 22
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=9.8e-53 Score=436.22 Aligned_cols=253 Identities=19% Similarity=0.233 Sum_probs=212.4
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCCC-----CCCcccc
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG-----KGSRGVY 159 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~~-----~~~rGyY 159 (589)
...||+|||+.+. +.+++|.+||++||||||.||||+.++++++++.+++||+||.|+|. ...+| |
T Consensus 3 ~~~iPvIDls~~~--------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~G-Y 73 (300)
T PLN02365 3 EVNIPTIDLEEFP--------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVILGSG-Y 73 (300)
T ss_pred cCCCCEEEChhhH--------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCCCCCCC-C
Confidence 3469999999872 23589999999999999999999999999999999999999998832 23467 4
Q ss_pred cccCCc-----CC-----------CCCC----CCh---HHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhHHhhhhcCCCC
Q 007796 160 MYRAGR-----AL-----------EDWD----SSP---PCMADIFRCMGKAARAALFAIARHLRL-RSDVFNHLLDDTPL 215 (589)
Q Consensus 160 ~~~~ge-----~l-----------ddWP----~~P---~~m~~y~~~m~kla~~LL~aIA~~LGL-~~~~F~~~ld~~pl 215 (589)
...... .. +.|| ..| +.+++|+++|.+++..||++||++||| ++++|.+..
T Consensus 74 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~~----- 148 (300)
T PLN02365 74 MAPSEVNPLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGWP----- 148 (300)
T ss_pred CCcCCCCCchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhcc-----
Confidence 322110 00 0133 324 899999999999999999999999999 888887631
Q ss_pred CCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecC--CCccceEcC-CCceEEccCCCCCCcEE
Q 007796 216 PANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD--SPGLQVCDP-NGRWYLADGGSAPGDLL 292 (589)
Q Consensus 216 ~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD--~~GLQV~~~-~G~Wi~Vpp~~~pg~lV 292 (589)
+.+|++|||+++..++ . .++++|||+|+||||+|| .+||||+++ +|+|++|+|. ||++|
T Consensus 149 ------~~lr~~~YP~~p~~~~--~--------~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p~--pga~v 210 (300)
T PLN02365 149 ------SQFRINKYNFTPETVG--S--------SGVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDPL--PGTLL 210 (300)
T ss_pred ------cceeeeecCCCCCccc--c--------ccccCccCCCceEEEecCCCcCceEEEECCCCeEEecCCC--CCeEE
Confidence 3799999999874322 2 358999999999999997 499999987 7899999998 99999
Q ss_pred EEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCCCccHHHHHHHHHH
Q 007796 293 LITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSA 372 (589)
Q Consensus 293 VNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~ 372 (589)
||+||+|++||||+|+|++|||+.+ .+.+||||+||+.|+.|++|.|+++++. ++.|++|++++++||+..++.
T Consensus 211 VNiGD~l~~~TNG~~~St~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~p~~~~v~-~~~p~~y~~~~~~e~~~~~~~ 284 (300)
T PLN02365 211 VNLGDVATAWSNGRLCNVKHRVQCK-----EATMRISIASFLLGPKDDDVEAPPEFVD-AEHPRLYKPFTYEDYRKLRLS 284 (300)
T ss_pred EEhhHHHHHHhCCceecccceeEcC-----CCCCEEEEEEEecCCCCCeEeCCHHHcC-CCCCccCCCccHHHHHHHHHh
Confidence 9999999999999999999999964 3468999999999999999999999984 457899999999999998876
Q ss_pred hhc
Q 007796 373 EED 375 (589)
Q Consensus 373 ~~~ 375 (589)
...
T Consensus 285 ~~~ 287 (300)
T PLN02365 285 TKL 287 (300)
T ss_pred ccc
Confidence 544
No 23
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=7.9e-51 Score=425.74 Aligned_cols=266 Identities=18% Similarity=0.254 Sum_probs=226.3
Q ss_pred CCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC-----CC-CCc
Q 007796 83 TMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-----GK-GSR 156 (589)
Q Consensus 83 ~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~-----~~-~~r 156 (589)
.+...||+|||+.+...+. .+.+++++|++||++||||+|.||||+.++++++++.+++||+||.|++ .+ ...
T Consensus 13 ~~~~~iPvIDls~~~~~~~-~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~ 91 (322)
T KOG0143|consen 13 TSELDIPVIDLSCLDSDDP-GREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYR 91 (322)
T ss_pred ccCCCcCeEECCCCCCcch-hHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCcc
Confidence 3467899999998876555 7888999999999999999999999999999999999999999999982 22 346
Q ss_pred ccccccCCc-C----------------C---C--CCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhh
Q 007796 157 GVYMYRAGR-A----------------L---E--DWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLL 210 (589)
Q Consensus 157 GyY~~~~ge-~----------------l---d--dWP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~l 210 (589)
| |...... . . . .||..| +.|++|.+++.+++..|+++|+++|||+.+++.+.+
T Consensus 92 g-Y~~~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~ 170 (322)
T KOG0143|consen 92 G-YGTSFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLF 170 (322)
T ss_pred c-ccccccccccccccchhheeeeccCccccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhh
Confidence 7 3321110 0 0 0 188775 899999999999999999999999999987777777
Q ss_pred cCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecC-C-CccceEcCCCceEEccCCCCC
Q 007796 211 DDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD-S-PGLQVCDPNGRWYLADGGSAP 288 (589)
Q Consensus 211 d~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD-~-~GLQV~~~~G~Wi~Vpp~~~p 288 (589)
+.. ..+.+|+++||+|+.++.. + |+++|||.|+||||.|| . +||||++.+|.|++|+|. |
T Consensus 171 ~~~------~~~~~r~n~Yp~cp~pe~~-----l-----Gl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~Wi~V~P~--p 232 (322)
T KOG0143|consen 171 GET------GGQVMRLNYYPPCPEPELT-----L-----GLGAHTDKSFLTILLQDDDVGGLQVFTKDGKWIDVPPI--P 232 (322)
T ss_pred CCc------cceEEEEeecCCCcCcccc-----c-----cccCccCcCceEEEEccCCcCceEEEecCCeEEECCCC--C
Confidence 652 2358999999999965442 4 49999999999999997 4 999999757899999999 9
Q ss_pred CcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCCCccHHHHHH
Q 007796 289 GDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMD 368 (589)
Q Consensus 289 g~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~pit~~df~~ 368 (589)
|+||||+||+|++||||+|+|+.|||+.+ ..+.|+|+|||+.|..|++|.|+++++.++ |++|+++++.+|++
T Consensus 233 ~a~vVNiGD~l~~lSNG~ykSv~HRV~~n-----~~~~R~Sia~F~~p~~d~~i~p~~elv~~~--~~~Y~~~~~~~y~~ 305 (322)
T KOG0143|consen 233 GAFVVNIGDMLQILSNGRYKSVLHRVVVN-----GEKERISVAFFVFPPLDKVIGPPEELVDEE--PPKYKPFTFGDYLE 305 (322)
T ss_pred CCEEEEcccHHhHhhCCcccceEEEEEeC-----CCCceEEEEEEecCCCCceecChhhhCCCC--CCccCcEEHHHHHH
Confidence 99999999999999999999999999984 235699999999999999999999998553 77799999999999
Q ss_pred HHHHhhc
Q 007796 369 DLSAEED 375 (589)
Q Consensus 369 ~r~~~~~ 375 (589)
..+....
T Consensus 306 ~~~~~~~ 312 (322)
T KOG0143|consen 306 FYFSKKL 312 (322)
T ss_pred HHHhccc
Confidence 8887654
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=1.3e-50 Score=421.13 Aligned_cols=256 Identities=18% Similarity=0.220 Sum_probs=208.9
Q ss_pred CcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC---CCCCccc----c
Q 007796 87 RVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV---GKGSRGV----Y 159 (589)
Q Consensus 87 ~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~---~~~~rGy----Y 159 (589)
.||+|||+.+.. ..+.+++++|.+||++||||+|.||||+.++++++++.++.||+||.|++ .....++ |
T Consensus 2 ~iPvIDls~~~~---~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~~~~~~~~~~~~~~ 78 (303)
T PLN02403 2 EIPVIDFDQLDG---EKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFYESEIAKALDNEGK 78 (303)
T ss_pred CCCeEeCccCCc---ccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccccCcccccCC
Confidence 699999998853 45778999999999999999999999999999999999999999999873 1111110 1
Q ss_pred ccc---------CCcCC---CCCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccce
Q 007796 160 MYR---------AGRAL---EDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSS 223 (589)
Q Consensus 160 ~~~---------~ge~l---ddWP~~-P---~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~ 223 (589)
... ...+. ..||.. | +.+++|+++|.+++..||++||++|||++++|.+++.... ...+.
T Consensus 79 ~~~~d~kE~~~~~~~p~~~~~~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~----~~~~~ 154 (303)
T PLN02403 79 TSDVDWESSFFIWHRPTSNINEIPNLSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNK----GPSVG 154 (303)
T ss_pred CCCccHhhhcccccCCccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCC----Cccce
Confidence 000 00111 129976 3 8999999999999999999999999999999998876310 11246
Q ss_pred EEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecC--CCccceEcCCCceEEccCCCCC-CcEEEEchhhhH
Q 007796 224 VLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD--SPGLQVCDPNGRWYLADGGSAP-GDLLLITGKALS 300 (589)
Q Consensus 224 lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD--~~GLQV~~~~G~Wi~Vpp~~~p-g~lVVNvGD~Le 300 (589)
+|++|||+++.++. . . ++++|||+|+||||+|| .+||||+ .+|+|++|+|. | |++|||+||+|+
T Consensus 155 lrl~~YP~~~~~~~--~---~-----G~~~HtD~g~lTlL~q~~~v~GLqV~-~~g~Wi~V~p~--p~~~lvVNvGD~L~ 221 (303)
T PLN02403 155 TKVAKYPECPRPEL--V---R-----GLREHTDAGGIILLLQDDQVPGLEFL-KDGKWVPIPPS--KNNTIFVNTGDQLE 221 (303)
T ss_pred eeeEcCCCCCCccc--c---c-----CccCccCCCeEEEEEecCCCCceEec-cCCeEEECCCC--CCCEEEEEehHHHH
Confidence 99999999874321 1 2 48899999999999996 4999997 57999999998 8 699999999999
Q ss_pred HHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCC-CccHHHHHHHHHHhhc
Q 007796 301 HATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYV-PISVSQFMDDLSAEED 375 (589)
Q Consensus 301 ~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~-pit~~df~~~r~~~~~ 375 (589)
+||||+|+|++|||+.+ ...+|||++||++|+.|++|.|+++++ |+ +++++||+..+.....
T Consensus 222 ~~Tng~~~S~~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~pl~~~~--------~~~~~~~~eyl~~~~~~~~ 284 (303)
T PLN02403 222 VLSNGRYKSTLHRVMAD-----KNGSRLSIATFYNPAGDAIISPAPKLL--------YPSNYRFQDYLKLYSTTKF 284 (303)
T ss_pred HHhCCeeecccceeecC-----CCCCEEEEEEEEcCCCCCeEeCchhhC--------CCCCccHHHHHHHHHHhcc
Confidence 99999999999999974 346799999999999999999999876 23 4999999988776433
No 25
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.5e-49 Score=418.99 Aligned_cols=246 Identities=16% Similarity=0.224 Sum_probs=202.9
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCCCC-----CCcccc
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK-----GSRGVY 159 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~~~-----~~rGyY 159 (589)
...||+|||+.+ .+++|.+||++||||+|.||||+.++++++++.+++||+||.|+|.. ...|||
T Consensus 36 ~~~IPvIDls~~----------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~ 105 (341)
T PLN02984 36 DIDIPVIDMECL----------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYF 105 (341)
T ss_pred cCCCCeEeCcHH----------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccc
Confidence 556999999976 15899999999999999999999999999999999999999988322 112221
Q ss_pred -cc----cCCc---------CCC----------------CC-CCC---h---HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 007796 160 -MY----RAGR---------ALE----------------DW-DSS---P---PCMADIFRCMGKAARAALFAIARHLRLR 202 (589)
Q Consensus 160 -~~----~~ge---------~ld----------------dW-P~~---P---~~m~~y~~~m~kla~~LL~aIA~~LGL~ 202 (589)
.. ..+. ..+ .| +.. | +.+++|+++|.+++..||++||++|||+
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~ 185 (341)
T PLN02984 106 WGTPALTPSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLE 185 (341)
T ss_pred cCcccccccccccccccccCCCCeeeEEeCcCCchhhhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 10 0000 001 13 222 3 7899999999999999999999999999
Q ss_pred --hhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCCce
Q 007796 203 --SDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRW 279 (589)
Q Consensus 203 --~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G~W 279 (589)
+++|.+++.+ + .+.+|++|||+++..+. . + |+++|||+|+||||+||. +||||+ .+|+|
T Consensus 186 ~~~~~f~~~~~~-~------~~~lRl~~YPp~~~~~~--~---~-----g~~aHTD~g~lTlL~Qd~v~GLQV~-~~g~W 247 (341)
T PLN02984 186 LSGDQKMSYLSE-S------TGVIRVYRYPQCSNEAE--A---P-----GMEVHTDSSVISILNQDEVGGLEVM-KDGEW 247 (341)
T ss_pred cchhHHHHHhcC-c------cceEEEEeCCCCCCccc--c---c-----CccCccCCCceEEEEeCCCCCeeEe-eCCce
Confidence 9999998865 2 25899999999875322 1 3 589999999999999986 999998 47999
Q ss_pred EEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCC
Q 007796 280 YLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYV 359 (589)
Q Consensus 280 i~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~ 359 (589)
++|+|. ||++|||+||+|++||||+|+|++|||+.+ + ....|||++||++|+.|++|.| ++|+
T Consensus 248 v~V~p~--pgalVVNiGD~Le~wTNg~~kSt~HRVv~~---~-~~~~R~Sia~F~~P~~d~~i~p-----------~~y~ 310 (341)
T PLN02984 248 FNVKPI--ANTLVVNLGDMMQVISDDEYKSVLHRVGKR---N-KKKERYSICYFVFPEEDCVIKS-----------SKYK 310 (341)
T ss_pred EECCCC--CCeEEEECChhhhhhcCCeeeCCCCccccC---C-CCCCeEEEEEEecCCCCCEEcc-----------CCcC
Confidence 999998 999999999999999999999999999642 1 3468999999999999999963 5799
Q ss_pred CccHHHHHHHHHHhhc
Q 007796 360 PISVSQFMDDLSAEED 375 (589)
Q Consensus 360 pit~~df~~~r~~~~~ 375 (589)
+++++||+..+.....
T Consensus 311 p~t~~e~l~~~~~~~~ 326 (341)
T PLN02984 311 PFTYSDFEAQVQLDVK 326 (341)
T ss_pred cccHHHHHHHHHhhhh
Confidence 9999999998876654
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.2e-42 Score=354.66 Aligned_cols=178 Identities=20% Similarity=0.321 Sum_probs=158.7
Q ss_pred CCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccC
Q 007796 170 WDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIG 245 (589)
Q Consensus 170 WP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G 245 (589)
||..| +.+++|+++|.+++.+||++||++||+++++|.+++.+ + .+.+|++|||+++.++. . +
T Consensus 67 wP~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~------~~~lrl~~YP~~~~~~~--~---~- 133 (262)
T PLN03001 67 WPDFPPDYREVVGEYGDCMKALAQKLLAFISESLGLPCSCIEDAVGD-F------YQNITVSYYPPCPQPEL--T---L- 133 (262)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC-c------chhheeecCCCCCCccc--c---c-
Confidence 88764 89999999999999999999999999999999998865 2 24799999999875432 2 3
Q ss_pred CCCCCCCCcccCceEEEEecCC-CccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCC
Q 007796 246 GGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNG 324 (589)
Q Consensus 246 ~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~ 324 (589)
++++|||+|+||||+||. +||||+. +|+|++|+|. ||++|||+||+|++||||+|+|++|||+.+ ..
T Consensus 134 ----g~~~HtD~g~lTlL~qd~v~GLqV~~-~g~Wi~V~p~--p~a~vVNiGD~l~~~tng~~~S~~HRVv~~-----~~ 201 (262)
T PLN03001 134 ----GLQSHSDFGAITLLIQDDVEGLQLLK-DAEWLMVPPI--SDAILIIIADQTEIITNGNYKSAQHRAIAN-----AN 201 (262)
T ss_pred ----CCcCCcCCCeeEEEEeCCCCceEEee-CCeEEECCCC--CCcEEEEccHHHHHHhCCccccccceEEcC-----CC
Confidence 489999999999999986 9999984 7899999998 999999999999999999999999999974 34
Q ss_pred CCceEEEEeeecCCCcEEecCcccccCCCCCCCCCCccHHHHHHHHHHh
Q 007796 325 GGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE 373 (589)
Q Consensus 325 ~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~~ 373 (589)
.+||||+||++|+.|++|.|+++++.+ +.|++|++++++||+..++..
T Consensus 202 ~~R~Sia~F~~p~~d~~i~p~~e~v~~-~~p~~y~~~~~~e~l~~~~~~ 249 (262)
T PLN03001 202 KARLSVATFHDPAKTAKIAPASALSTE-SFPPRYCEIVYGEYVSSWYSK 249 (262)
T ss_pred CCEEEEEEEEcCCCCCEEeCChHhcCC-CCCCcCCCccHHHHHHHHHHh
Confidence 789999999999999999999999854 578999999999999887764
No 27
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.79 E-value=1.7e-19 Score=156.52 Aligned_cols=94 Identities=37% Similarity=0.592 Sum_probs=69.6
Q ss_pred ceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccC--ceEEEEecC-CCccceEcCCCceEEccCCCCCCcEEEEchhh
Q 007796 222 SSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEK--GLLTLISSD-SPGLQVCDPNGRWYLADGGSAPGDLLLITGKA 298 (589)
Q Consensus 222 s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~--GlLTLL~qD-~~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~ 298 (589)
+.+|+++|++ + ..+ .++++|+|. +++|+|+++ ++||||++. ++|+.|++. ++.++||+||+
T Consensus 2 ~~~~~~~Y~~-~---~~~---------~~~~~H~D~~~~~~Til~~~~~~gL~~~~~-~~~~~v~~~--~~~~~v~~G~~ 65 (98)
T PF03171_consen 2 SQLRLNRYPP-P---ENG---------VGIGPHTDDEDGLLTILFQDEVGGLQVRDD-GEWVDVPPP--PGGFIVNFGDA 65 (98)
T ss_dssp -EEEEEEE-S-C---CGC---------EEEEEEEES--SSEEEEEETSTS-EEEEET-TEEEE------TTCEEEEEBHH
T ss_pred CEEEEEECCC-c---ccC---------CceeCCCcCCCCeEEEEecccchheecccc-ccccCccCc--cceeeeeceee
Confidence 3799999998 1 111 258999999 999999995 599999985 489999998 99999999999
Q ss_pred hHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeec
Q 007796 299 LSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMP 336 (589)
Q Consensus 299 Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P 336 (589)
|++||||.++++.|||..+ ....|+|++||++|
T Consensus 66 l~~~t~g~~~~~~HrV~~~-----~~~~R~s~~~f~~p 98 (98)
T PF03171_consen 66 LEILTNGRYPATLHRVVPP-----TEGERYSLTFFLRP 98 (98)
T ss_dssp HHHHTTTSS----EEEE-------STS-EEEEEEEEE-
T ss_pred eecccCCccCCceeeeEcC-----CCCCEEEEEEEECC
Confidence 9999999999999999974 25799999999998
No 28
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.41 E-value=1.3e-13 Score=122.97 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=60.5
Q ss_pred cceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccC-----CCCCCcccccc
Q 007796 88 VRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQT-----VGKGSRGVYMY 161 (589)
Q Consensus 88 IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee-----~~~~~rGyY~~ 161 (589)
||||||+. +.+.+.+++++|.+||+++|||||.||||+.++++++++.+++||+||.|+ ..+..+| |..
T Consensus 1 iPvIDls~----~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~~~G-y~~ 74 (116)
T PF14226_consen 1 IPVIDLSP----DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARSPSYRG-YSP 74 (116)
T ss_dssp --EEEHGG----CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCCTTCSE-EEE
T ss_pred CCeEECCC----CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCCCCCcc-ccc
Confidence 79999998 456899999999999999999999999999999999999999999999988 3456788 554
No 29
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.36 E-value=1.6e-12 Score=118.84 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=59.5
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccC
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQT 150 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee 150 (589)
...||+|||+.+.+++ +.+.+++++|.+||++||||||.||||+.++++++++.+++||+||.|+
T Consensus 35 ~~~iPvIDls~~~~~~-~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~LP~e~ 99 (120)
T PLN03176 35 SNEIPVISIAGIDDGG-EKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEE 99 (120)
T ss_pred CCCCCeEECccccCCc-hHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHH
Confidence 3479999999987644 4577899999999999999999999999999999999999999999988
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.25 E-value=3.1e-12 Score=107.00 Aligned_cols=67 Identities=18% Similarity=0.356 Sum_probs=55.9
Q ss_pred cccCCCccccccccchhhccCCccChhhHH-HHhh-cCcccccCcccccCCCCchHHHHHHHHHHHhhh
Q 007796 399 SVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVID-TSRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (589)
Q Consensus 399 ~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~-~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~ 465 (589)
.-|.+|+||++|.|+||++|||+|....|+ |+.+ ..+|++|+.+++...|.||.+||.++++|+++.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAEN 71 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHC
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHc
Confidence 346899999999999999999999999999 5555 699999999999999999999999999999874
No 31
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.86 E-value=1.6e-09 Score=86.81 Aligned_cols=60 Identities=18% Similarity=0.383 Sum_probs=55.4
Q ss_pred cCCCccccccccchhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHH
Q 007796 401 LSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVA 460 (589)
Q Consensus 401 lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~ 460 (589)
|..|+++.+|+|+|+++|||+|....|. ++.+...|++|+.+++...|.||..||.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 4689999999999999999999999998 66677899999999999999999999998874
No 32
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.15 E-value=0.00052 Score=74.74 Aligned_cols=71 Identities=24% Similarity=0.448 Sum_probs=57.6
Q ss_pred cccccCCCccccccccchhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHHHHhhhhh
Q 007796 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDR 467 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~~~ 467 (589)
|++-|.=|+=..++.++++.+|||.|-..=|+ ++.+...|++|+.++....|.+|+.|+.+++.|+..+..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~~ 94 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRPS 94 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhhHH
Confidence 33444456667788999999999999988888 455556799999999988999999999999999865443
No 33
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.07 E-value=0.0017 Score=52.23 Aligned_cols=38 Identities=26% Similarity=0.590 Sum_probs=27.1
Q ss_pred cCCCccccccccchhh-ccCCccChhhHHHHhh---cCcccc
Q 007796 401 LSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVID---TSRCTI 438 (589)
Q Consensus 401 lsdp~~g~~~~da~~~-~cghsf~~~~~~~~~~---~~~c~~ 438 (589)
+.+|+|+..|+|+|.. .|||+|....|...++ ...|++
T Consensus 12 ~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 12 LKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3899999999999998 7999999999996653 356775
No 34
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=94.59 E-value=0.015 Score=57.68 Aligned_cols=51 Identities=22% Similarity=0.483 Sum_probs=42.0
Q ss_pred CCccccccccchhhccCCccChhhHH-HHh----------------hcCcccccCcccccCCCCchHH
Q 007796 403 DPLSGAFLDDAMVVSCGHSFGGLMLR-KVI----------------DTSRCTICSAEIETGSLVPNLA 453 (589)
Q Consensus 403 dp~~g~~~~da~~~~cghsf~~~~~~-~~~----------------~~~~c~~c~~~~~~~~l~pn~~ 453 (589)
=|+=...+.|+++.+|||+|=..=|. |+. +...|++|+.+|+...|.|.|.
T Consensus 21 CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 21 CNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 36667778899999999999888887 543 2468999999999999999874
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=94.49 E-value=0.02 Score=60.64 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=62.6
Q ss_pred hhhhcccCCCccccccc---CCCccccccccchhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHH
Q 007796 385 YLVQNNLNKEPSLRSVL---SDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVA 460 (589)
Q Consensus 385 ~~~~~~~~~~~sl~~~l---sdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~ 460 (589)
++++++-++.|||+.+= -==+--+++.=+||.||||+|-++-|+ .+-....|+.|-.++++..|.-|.-|-..++-
T Consensus 5 ~~Sdw~~tsipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S 84 (442)
T KOG0287|consen 5 AESDWPPTSIPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKS 84 (442)
T ss_pred ccccCCCccCchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHH
Confidence 45556667778776542 112335778889999999999999999 66677999999999999999988888888877
Q ss_pred HHhh
Q 007796 461 IKQE 464 (589)
Q Consensus 461 ~~~e 464 (589)
|.--
T Consensus 85 ~~~~ 88 (442)
T KOG0287|consen 85 LNFA 88 (442)
T ss_pred HHHH
Confidence 6544
No 36
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=93.77 E-value=0.024 Score=43.07 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=19.6
Q ss_pred Ccccccccc----chhhccCCccChhhHHHHhhcC
Q 007796 404 PLSGAFLDD----AMVVSCGHSFGGLMLRKVIDTS 434 (589)
Q Consensus 404 p~~g~~~~d----a~~~~cghsf~~~~~~~~~~~~ 434 (589)
|++-+ +.+ +|+++|||+|-..-|+++.+.+
T Consensus 2 pIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 2 PICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred Ccccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 44445 556 8999999999999999888865
No 37
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=92.83 E-value=0.052 Score=41.84 Aligned_cols=35 Identities=29% Similarity=0.605 Sum_probs=26.3
Q ss_pred cccchhhccCCc-cChhhHH-HHhhcCcccccCcccc
Q 007796 410 LDDAMVVSCGHS-FGGLMLR-KVIDTSRCTICSAEIE 444 (589)
Q Consensus 410 ~~da~~~~cghs-f~~~~~~-~~~~~~~c~~c~~~~~ 444 (589)
..+++++||||. |=..=++ +......|++|+++|+
T Consensus 12 ~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 12 PRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp BSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 467888999999 6544444 5568899999999986
No 38
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=92.35 E-value=0.12 Score=44.66 Aligned_cols=68 Identities=22% Similarity=0.348 Sum_probs=47.1
Q ss_pred CCCcccC-----ceEEEEe--cC------CCccceEcC---CCceEEcc-----CCCCCCcEEEEchhhhHHHhCCCCCC
Q 007796 251 MNGEVEK-----GLLTLIS--SD------SPGLQVCDP---NGRWYLAD-----GGSAPGDLLLITGKALSHATAGLRPA 309 (589)
Q Consensus 251 ~~~HTD~-----GlLTLL~--qD------~~GLQV~~~---~G~Wi~Vp-----p~~~pg~lVVNvGD~Le~lTnG~lkS 309 (589)
..+|+|. ..+|+|+ ++ ++.|++.+. ++....++ |. +|.+|++-+ ..
T Consensus 12 ~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~--~g~~v~F~~-----------~~ 78 (100)
T PF13640_consen 12 FGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPK--PGRLVIFPS-----------DN 78 (100)
T ss_dssp EEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-B--TTEEEEEES-----------CT
T ss_pred EeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCC--CCEEEEEeC-----------CC
Confidence 6799988 7888883 31 266888863 45556665 76 899998877 34
Q ss_pred ccceeccCCCCCCCCCCceEEEEeee
Q 007796 310 ALYRAAPDFVSCSNGGGRTSLAFRLM 335 (589)
Q Consensus 310 tlHRVv~p~~~~~~~~~R~SiafF~~ 335 (589)
.+|+|... .....|+++.+|++
T Consensus 79 ~~H~v~~v----~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 79 SLHGVTPV----GEGGRRYSLTFWFH 100 (100)
T ss_dssp CEEEEEEE-----EESEEEEEEEEEE
T ss_pred CeecCccc----CCCCCEEEEEEEEC
Confidence 58999862 13578999999975
No 39
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=92.04 E-value=0.064 Score=39.29 Aligned_cols=32 Identities=31% Similarity=0.697 Sum_probs=22.6
Q ss_pred cccccc-hhhccCCccChhhHH-HHhhcCccccc
Q 007796 408 AFLDDA-MVVSCGHSFGGLMLR-KVIDTSRCTIC 439 (589)
Q Consensus 408 ~~~~da-~~~~cghsf~~~~~~-~~~~~~~c~~c 439 (589)
..+.|+ ++++|||+|=..=|+ ++.+..+|++|
T Consensus 6 ~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 6 DELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp SB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 345667 577999999887777 56666888876
No 40
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=91.93 E-value=1.7 Score=42.01 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=45.0
Q ss_pred eEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCc-------eEEEEecCCCccceEcC--CCceEEccCCCCCCcEEE
Q 007796 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKG-------LLTLISSDSPGLQVCDP--NGRWYLADGGSAPGDLLL 293 (589)
Q Consensus 223 ~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~G-------lLTLL~qD~~GLQV~~~--~G~Wi~Vpp~~~pg~lVV 293 (589)
.+.+++|.+.. +++.|.|-- ++||-+....=+.+... .+.++.+.-. +|+++|
T Consensus 98 ~~liN~Y~~g~----------------~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~--~gsl~v 159 (194)
T PF13532_consen 98 QCLINYYRDGS----------------GIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLP--PGSLLV 159 (194)
T ss_dssp EEEEEEESSTT-----------------EEEE---TTC-CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE---TTEEEE
T ss_pred EEEEEecCCCC----------------CcCCCCCcccccCCCcEEEEEEccCceEEEeeccCCCccEEEEcC--CCCEEE
Confidence 67889998832 266777755 23333322233444442 3467887766 999999
Q ss_pred EchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEe
Q 007796 294 ITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFR 333 (589)
Q Consensus 294 NvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF 333 (589)
+-|++=..| .|..+... ..... ......|+||.|.
T Consensus 160 m~g~~r~~~-H~I~~~~~-~~~~~---~~~~~~RislTfR 194 (194)
T PF13532_consen 160 MSGEARYDW-HGIPPVKK-DTHPS---HYVRGRRISLTFR 194 (194)
T ss_dssp EETTHHHHE-EEE-S-SC-EEEES---TEE-S-EEEEEEE
T ss_pred eChHHhhhe-eEcccccC-Ccccc---ccCCCCEEEEEeC
Confidence 999997666 44333221 00000 0012479999984
No 41
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=91.91 E-value=0.057 Score=40.47 Aligned_cols=30 Identities=20% Similarity=0.653 Sum_probs=24.6
Q ss_pred ccchhhccCCccChhhHH-HHhhcCcccccC
Q 007796 411 DDAMVVSCGHSFGGLMLR-KVIDTSRCTICS 440 (589)
Q Consensus 411 ~da~~~~cghsf~~~~~~-~~~~~~~c~~c~ 440 (589)
++.++++|||.|-..=|+ |+.+...|++|+
T Consensus 14 ~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 14 EKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp SCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 456677999999998888 888899999984
No 42
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=91.66 E-value=0.093 Score=39.49 Aligned_cols=33 Identities=27% Similarity=0.637 Sum_probs=21.9
Q ss_pred ccccccchhhccCCccChhhHHHHhhcC-----ccccc
Q 007796 407 GAFLDDAMVVSCGHSFGGLMLRKVIDTS-----RCTIC 439 (589)
Q Consensus 407 g~~~~da~~~~cghsf~~~~~~~~~~~~-----~c~~c 439 (589)
-.++.|+|.++|||+|=..=|++..+.. .|+.|
T Consensus 5 ~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 5 LDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp TSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred chhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 3578888999999999888788665543 46554
No 43
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=90.71 E-value=0.19 Score=52.57 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=58.3
Q ss_pred hcccCCCcccccccCC---CccccccccchhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHHHHh
Q 007796 388 QNNLNKEPSLRSVLSD---PLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQ 463 (589)
Q Consensus 388 ~~~~~~~~sl~~~lsd---p~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~ 463 (589)
-++-+|.|||+.+=+- =+--.++.=.++-+|||+|-.+-|+ ++-+...|+.|..+-.+.-|.=|.-+|...+-|.+
T Consensus 10 D~~~T~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 10 DWNQTKIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred ccccccCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 3556677777653111 1112233345667999999999999 78888999999999888888888888888888877
Q ss_pred hhhh
Q 007796 464 EDDR 467 (589)
Q Consensus 464 e~~~ 467 (589)
-++.
T Consensus 90 ~r~~ 93 (391)
T COG5432 90 NRDL 93 (391)
T ss_pred ccHH
Confidence 6554
No 44
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=90.56 E-value=0.19 Score=36.19 Aligned_cols=30 Identities=23% Similarity=0.661 Sum_probs=22.3
Q ss_pred hhhccCCccChhhHH-HHhh-cCcccccCccc
Q 007796 414 MVVSCGHSFGGLMLR-KVID-TSRCTICSAEI 443 (589)
Q Consensus 414 ~~~~cghsf~~~~~~-~~~~-~~~c~~c~~~~ 443 (589)
++.+|||.|-..=++ +..+ ...|++|+.++
T Consensus 14 ~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 14 VLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred EecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 344599999888887 4444 57899998764
No 45
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=90.54 E-value=0.77 Score=44.75 Aligned_cols=73 Identities=21% Similarity=0.151 Sum_probs=46.5
Q ss_pred CCCCcccC----ceEEEEec----C-CCccceEcC---CCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccC
Q 007796 250 AMNGEVEK----GLLTLISS----D-SPGLQVCDP---NGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPD 317 (589)
Q Consensus 250 ~~~~HTD~----GlLTLL~q----D-~~GLQV~~~---~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p 317 (589)
....|.|. ...|++.. | .+|+-++.. +..=+.+.+. +|++++..|-.+ .|-|..-
T Consensus 86 ~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~--~GtVl~~~~~~~-----------~Hgvtpv 152 (171)
T PF12851_consen 86 CTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQ--PGTVLIFCAKRE-----------LHGVTPV 152 (171)
T ss_pred CccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEEEecC--CCcEEEEcccce-----------eeecCcc
Confidence 45678887 56666655 2 367777653 1122334445 999999999877 6666542
Q ss_pred CCCCCCCCCceEEEEeee
Q 007796 318 FVSCSNGGGRTSLAFRLM 335 (589)
Q Consensus 318 ~~~~~~~~~R~SiafF~~ 335 (589)
...+.....|+|++||++
T Consensus 153 ~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 153 ESPNRNHGTRISLVFYQH 170 (171)
T ss_pred cCCCCCCCeEEEEEEEeE
Confidence 111234578999999986
No 46
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=90.17 E-value=7.3 Score=39.52 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=48.7
Q ss_pred eEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccC-------ceEEEEecCCCccceE--cCCCceEEccCCCCCCcEEE
Q 007796 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEK-------GLLTLISSDSPGLQVC--DPNGRWYLADGGSAPGDLLL 293 (589)
Q Consensus 223 ~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~-------GlLTLL~qD~~GLQV~--~~~G~Wi~Vpp~~~pg~lVV 293 (589)
.+.+|+|.+-. +++.|.|- -+++|-+.+..=+.+. ..++.++.+.-. .|+++|
T Consensus 117 a~LvN~Y~~G~----------------~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~--~Gdllv 178 (213)
T PRK15401 117 ACLINRYAPGA----------------KLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKRSDPLQRILLE--HGDVVV 178 (213)
T ss_pred EEEEEeccCcC----------------ccccccCCCcccCCCCEEEEeCCCCeEEEecccCCCCceEEEEeC--CCCEEE
Confidence 68899999732 26777773 2233333332222222 123468887655 999999
Q ss_pred EchhhhHHHhCCCCCCccceeccCCC-CC-CCCCCceEEEEee
Q 007796 294 ITGKALSHATAGLRPAALYRAAPDFV-SC-SNGGGRTSLAFRL 334 (589)
Q Consensus 294 NvGD~Le~lTnG~lkStlHRVv~p~~-~~-~~~~~R~SiafF~ 334 (589)
.-|++ ..| .|.|..-.. .. ..+..|+++.|..
T Consensus 179 m~G~s-r~~--------~HgVp~~~~~~~p~~g~~RINLTFR~ 212 (213)
T PRK15401 179 WGGPS-RLR--------YHGILPLKAGEHPLTGECRINLTFRK 212 (213)
T ss_pred ECchH-hhe--------eccCCcCCCCcCCCCCCCeEEEEeEc
Confidence 99996 444 465542100 00 1234799999863
No 47
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=0.22 Score=49.25 Aligned_cols=68 Identities=22% Similarity=0.468 Sum_probs=54.0
Q ss_pred cccccCCCccccccccchhhccCCccChhhHHHHh-hcCcccccCcccccCCCCchHHHHHHHHHHHhhhh
Q 007796 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDD 466 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~~-~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~~ 466 (589)
+...+..|+--..+.+++|++|||+|=..-|+... ....|+.|.. ... .|.||..|=..++.+++...
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCC
Confidence 34556788888899999999999999988887444 3468999996 333 88899999999999886643
No 48
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=89.79 E-value=0.36 Score=57.75 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=58.7
Q ss_pred CCCccccccccchhhc-cCCccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHHHHhhhhh
Q 007796 402 SDPLSGAFLDDAMVVS-CGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDR 467 (589)
Q Consensus 402 sdp~~g~~~~da~~~~-cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~~~ 467 (589)
-||+.+.+|-|.|++| =|++.+...|+ +++...+=+-|+.+++++.+.||-.|++-.+.+.+|+..
T Consensus 872 ~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~~ 939 (943)
T KOG2042|consen 872 LDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKRN 939 (943)
T ss_pred hCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHHHhhh
Confidence 5999999999999998 99999999887 555555556999999999999999999999999999543
No 49
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.77 E-value=0.22 Score=51.55 Aligned_cols=96 Identities=17% Similarity=0.369 Sum_probs=59.9
Q ss_pred CCCCCCccHHHHHHHHHHh--hcccCCCCC-chhhhhcccCCCc-----------ccccccCCCcccccccc---chhh-
Q 007796 355 PQSYVPISVSQFMDDLSAE--EDGLCNRSD-NTYLVQNNLNKEP-----------SLRSVLSDPLSGAFLDD---AMVV- 416 (589)
Q Consensus 355 p~~y~pit~~df~~~r~~~--~~~~~~~~~-~~~~~~~~~~~~~-----------sl~~~lsdp~~g~~~~d---a~~~- 416 (589)
...|-.-.+-+|+..+-.. ......+.. +-..-..+|.+.+ .....+--|+|+.-|.. .+.+
T Consensus 54 G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~ 133 (260)
T PF04641_consen 54 GRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFTKNPSYKEEDKSSGDNSEGRFICPVTGKEFNGKHKFVYLR 133 (260)
T ss_pred CeeEcHHHHHHHHHhcCcCCCCccccccccCccceeeEEeEecCccccccccccccCCceeECCCCCcccCCceeEEEEc
Confidence 4567777777777766332 010111111 1122223343332 23455677999988865 4444
Q ss_pred ccCCccChhhHHHHhhcCcccccCcccccCCCCc
Q 007796 417 SCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVP 450 (589)
Q Consensus 417 ~cghsf~~~~~~~~~~~~~c~~c~~~~~~~~l~p 450 (589)
+|||-|....|+.+.....|++|+.+.+...+.|
T Consensus 134 ~cG~V~s~~alke~k~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 134 PCGCVFSEKALKELKKSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCCCEeeHHHHHhhcccccccccCCccccCCEEE
Confidence 9999999999999975678999999988666553
No 50
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=0.31 Score=50.26 Aligned_cols=67 Identities=15% Similarity=0.309 Sum_probs=58.7
Q ss_pred cccCCCccccccccchhhccCCccChhhHH-HHhhcCccc-ccCcccccCCCCchHHHHHHHHHHHhhh
Q 007796 399 SVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCT-ICSAEIETGSLVPNLALRAAAVAIKQED 465 (589)
Q Consensus 399 ~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~-~c~~~~~~~~l~pn~~lr~~~~~~~~e~ 465 (589)
.-|.--+|-++|.|.+|.|-|=++...-|. ++++..+=. +..-+|++.-|.||++|-.++.+|++|-
T Consensus 210 d~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n 278 (284)
T KOG4642|consen 210 DYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKEN 278 (284)
T ss_pred chhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhc
Confidence 345667889999999999999999998887 777776655 8999999999999999999999999874
No 51
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.04 E-value=0.48 Score=51.73 Aligned_cols=60 Identities=25% Similarity=0.552 Sum_probs=44.4
Q ss_pred hhhccCCccChhhHH-HHh--hcCcccccCcccccCCCCchHHHHHHHHHH---HhhhhhhhhhhH
Q 007796 414 MVVSCGHSFGGLMLR-KVI--DTSRCTICSAEIETGSLVPNLALRAAAVAI---KQEDDRRLFHNA 473 (589)
Q Consensus 414 ~~~~cghsf~~~~~~-~~~--~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~---~~e~~~~~~~~~ 473 (589)
+++-|||-||+.-|+ |+- -.++|+.|+.+-+--.|.|-++||..++-= .+.|++++.|..
T Consensus 23 vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~dt~~~~rle~q~~T~~c 88 (463)
T KOG1645|consen 23 VSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAMDTENEQRLEEQRRTHTC 88 (463)
T ss_pred eeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344699999999998 553 237999999999999999999999876532 233333555554
No 52
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=87.80 E-value=0.24 Score=57.52 Aligned_cols=53 Identities=21% Similarity=0.468 Sum_probs=41.5
Q ss_pred ccccCCCccccccccchhhccCCccChhhHHHHhhc--CcccccCcccccCCCCc
Q 007796 398 RSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT--SRCTICSAEIETGSLVP 450 (589)
Q Consensus 398 ~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~~~~--~~c~~c~~~~~~~~l~p 450 (589)
|.+|.=|+=-.=--|++|.+|||=|=..=++..+++ .+||+||.+...+++-|
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 445555554444579999999999999999977765 89999999988777644
No 53
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=86.61 E-value=7.3 Score=37.23 Aligned_cols=160 Identities=18% Similarity=0.114 Sum_probs=88.6
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC-CCCCccc-ccccCCcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007796 120 AAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-GKGSRGV-YMYRAGRALEDWDSSPPCMADIFRCMGKAARAALFAIAR 197 (589)
Q Consensus 120 FF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~-~~~~rGy-Y~~~~ge~lddWP~~P~~m~~y~~~m~kla~~LL~aIA~ 197 (589)
++++.+- ++++.++.+.+.++..+. +.+.. +....+. -..+... ..|-..-. ...+...|.+.|+.
T Consensus 3 i~~~~~~-ls~~ec~~li~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~--~~~l~~~~--------~~~~~~~l~~~i~~ 70 (178)
T smart00702 3 VVVFHDF-LSPAECQKLLEEAEPLGW-RGEVTRGDTNPNHDSKYRQSN--GTWLELLK--------GDLVIERIRQRLAD 70 (178)
T ss_pred EEEECCC-CCHHHHHHHHHHhhhhcc-cceeecCCCCccccCCCEeec--ceecCCCC--------CCHHHHHHHHHHHH
Confidence 4555555 889999999999888653 32221 1110000 0000000 01211100 12345556666677
Q ss_pred hCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCc--------eEEEEec--C-
Q 007796 198 HLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKG--------LLTLISS--D- 266 (589)
Q Consensus 198 ~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~G--------lLTLL~q--D- 266 (589)
.++++.. .... ...+.+++|.+.. ...+|.|.. .+|++.. |
T Consensus 71 ~~~~~~~----~~~~--------~~~~~~~~Y~~g~----------------~~~~H~D~~~~~~~~~r~~T~~~yLn~~ 122 (178)
T smart00702 71 FLGLLRG----LPLS--------AEDAQVARYGPGG----------------HYGPHVDNFEDDENGDRIATFLLYLNDV 122 (178)
T ss_pred HHCCCch----hhcc--------CcceEEEEECCCC----------------cccCcCCCCCCCCCCCeEEEEEEEeccC
Confidence 7776422 1111 1268999998732 156788865 6787765 4
Q ss_pred --CCccceEcCCC-ceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeee
Q 007796 267 --SPGLQVCDPNG-RWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLM 335 (589)
Q Consensus 267 --~~GLQV~~~~G-~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~ 335 (589)
++.|.+.+.+. ....|.|. .|.+|++-... +.++|.|.+- ....|+++..+++
T Consensus 123 ~~GG~~~f~~~~~~~~~~v~P~--~G~~v~f~~~~---------~~~~H~v~pv-----~~G~r~~~~~W~~ 178 (178)
T smart00702 123 EEGGELVFPGLGLMVCATVKPK--KGDLLFFPSGR---------GRSLHGVCPV-----TRGSRWAITGWIR 178 (178)
T ss_pred CcCceEEecCCCCccceEEeCC--CCcEEEEeCCC---------CCccccCCcc-----eeCCEEEEEEEEC
Confidence 25577775432 35677777 88888765321 1678999752 2368999988764
No 54
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=85.78 E-value=0.46 Score=32.79 Aligned_cols=30 Identities=40% Similarity=0.917 Sum_probs=22.5
Q ss_pred cccchhhccCCccChhhHHHHh--hcCccccc
Q 007796 410 LDDAMVVSCGHSFGGLMLRKVI--DTSRCTIC 439 (589)
Q Consensus 410 ~~da~~~~cghsf~~~~~~~~~--~~~~c~~c 439 (589)
..++++++|||.|-..=++... ....|+.|
T Consensus 8 ~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 8 LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 4678889999999888777443 35668766
No 55
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=84.75 E-value=6.7 Score=40.11 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=34.7
Q ss_pred CCccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEee
Q 007796 267 SPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRL 334 (589)
Q Consensus 267 ~~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~ 334 (589)
++.|.+.+..|. ..|.|. .|.+||+-. +.+|+|.+ .....||++.+..
T Consensus 129 GGEl~~~~~~g~-~~Vkp~--aG~~vlfps------------~~lH~v~p-----Vt~G~R~~~~~Wi 176 (226)
T PRK05467 129 GGELVIEDTYGE-HRVKLP--AGDLVLYPS------------TSLHRVTP-----VTRGVRVASFFWI 176 (226)
T ss_pred CCceEEecCCCc-EEEecC--CCeEEEECC------------CCceeeee-----ccCccEEEEEecH
Confidence 466999876665 456666 888888874 47899985 1346799987765
No 56
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.23 E-value=0.56 Score=50.58 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=32.1
Q ss_pred ccchhhccCCccChhhHH-HHhhcCc-ccccCcccccCCC
Q 007796 411 DDAMVVSCGHSFGGLMLR-KVIDTSR-CTICSAEIETGSL 448 (589)
Q Consensus 411 ~da~~~~cghsf~~~~~~-~~~~~~~-c~~c~~~~~~~~l 448 (589)
|.-.|+||.|-|=..=|. |+.+..+ |++|+.++....-
T Consensus 243 dklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 243 DKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred CeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 345789999999999998 9999955 9999998776554
No 57
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.72 E-value=1.1 Score=47.73 Aligned_cols=46 Identities=17% Similarity=0.441 Sum_probs=34.5
Q ss_pred chhhccCCccChhhHHHHh--hcCcccccCcccccCC----CCchHHHHHHH
Q 007796 413 AMVVSCGHSFGGLMLRKVI--DTSRCTICSAEIETGS----LVPNLALRAAA 458 (589)
Q Consensus 413 a~~~~cghsf~~~~~~~~~--~~~~c~~c~~~~~~~~----l~pn~~lr~~~ 458 (589)
.||.+|||.|=..=|.++. ....|+.|+.++.-.. +++..+.--.+
T Consensus 21 l~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 21 LMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred cccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 3677899999988888654 4468999999999777 67766554433
No 58
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=83.40 E-value=0.46 Score=39.85 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=21.7
Q ss_pred hccCCccChhhHH-HHhhcCcccccC
Q 007796 416 VSCGHSFGGLMLR-KVIDTSRCTICS 440 (589)
Q Consensus 416 ~~cghsf~~~~~~-~~~~~~~c~~c~ 440 (589)
.+|||.|...=|+ |+.....|++|+
T Consensus 48 ~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4799999999888 999999999996
No 59
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=83.05 E-value=0.66 Score=33.87 Aligned_cols=31 Identities=35% Similarity=0.868 Sum_probs=22.1
Q ss_pred ccccch-hhccCCccChhhHHHHhh---cCccccc
Q 007796 409 FLDDAM-VVSCGHSFGGLMLRKVID---TSRCTIC 439 (589)
Q Consensus 409 ~~~da~-~~~cghsf~~~~~~~~~~---~~~c~~c 439 (589)
.+++.+ +++|||+|-..=|++.++ ...|+.|
T Consensus 7 ~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 7 PFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp BCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred cccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 345555 889999999988884444 4667665
No 60
>PHA02929 N1R/p28-like protein; Provisional
Probab=82.60 E-value=0.74 Score=47.34 Aligned_cols=37 Identities=16% Similarity=0.442 Sum_probs=29.9
Q ss_pred chhhccCCccChhhHH-HHhhcCcccccCcccccCCCCch
Q 007796 413 AMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPN 451 (589)
Q Consensus 413 a~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn 451 (589)
+++.+|||.|-..=|. |..+...||+|+.++. ++.++
T Consensus 195 ~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~--~v~~~ 232 (238)
T PHA02929 195 GILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI--SVIKS 232 (238)
T ss_pred eecCCCCCcccHHHHHHHHhcCCCCCCCCCEee--EEeee
Confidence 4566899999988886 9889999999999876 44443
No 61
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=80.01 E-value=0.82 Score=34.38 Aligned_cols=29 Identities=34% Similarity=0.757 Sum_probs=23.4
Q ss_pred chhhccCCccChhhHHHHh-hcCcccccCc
Q 007796 413 AMVVSCGHSFGGLMLRKVI-DTSRCTICSA 441 (589)
Q Consensus 413 a~~~~cghsf~~~~~~~~~-~~~~c~~c~~ 441 (589)
++|++|||+|=..=|++.. ....|++|++
T Consensus 15 ~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 15 PRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred eEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 6788999999887777665 6678999974
No 62
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=79.15 E-value=2 Score=35.66 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=27.4
Q ss_pred cccccCCCccccccccchh-hccCCccChhhHHHHhhcCcccccCcccccCCCCchHHH
Q 007796 397 LRSVLSDPLSGAFLDDAMV-VSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLAL 454 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~-~~cghsf~~~~~~~~~~~~~c~~c~~~~~~~~l~pn~~l 454 (589)
|...|.=+.-..+|.++|. ..|.|.|=+.=|+.-+. +.|+.|+.|-....+.=|--|
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-~~CPvC~~Paw~qD~~~NrqL 61 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-SECPVCHTPAWIQDIQINRQL 61 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-TB-SSS--B-S-SS----HHH
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-CCCCCcCChHHHHHHHhhhhh
Confidence 3444555666788899865 58999999998876655 459999999887777656544
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.92 E-value=2 Score=45.29 Aligned_cols=63 Identities=24% Similarity=0.520 Sum_probs=54.9
Q ss_pred cCCCccccccccchhhc-cCCccChhhHH-HHhhc-CcccccCc-ccccCCCCchHHHHHHHHHHHh
Q 007796 401 LSDPLSGAFLDDAMVVS-CGHSFGGLMLR-KVIDT-SRCTICSA-EIETGSLVPNLALRAAAVAIKQ 463 (589)
Q Consensus 401 lsdp~~g~~~~da~~~~-cghsf~~~~~~-~~~~~-~~c~~c~~-~~~~~~l~pn~~lr~~~~~~~~ 463 (589)
|.-|+.+-|+-.+|=-+ |||.|-..-|+ -++++ ..|+.|.. +|-.+.|.|.+--..++.+|++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 57899999999999995 99999999988 55555 78999986 5889999999999999988877
No 64
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.68 E-value=1.1 Score=46.22 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=39.2
Q ss_pred cCCCccccccccch----hhccCCccChhhHHHHhhcCcccccCcccccCCCC
Q 007796 401 LSDPLSGAFLDDAM----VVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLV 449 (589)
Q Consensus 401 lsdp~~g~~~~da~----~~~cghsf~~~~~~~~~~~~~c~~c~~~~~~~~l~ 449 (589)
+-=|++|--|.+.- +.+|||=|.--.|+.|+ -+.|..|++..++....
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHhh-hccccccCCcccccCeE
Confidence 34599999898854 44999999999988877 79999999998866544
No 65
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.41 E-value=1.2 Score=43.77 Aligned_cols=34 Identities=24% Similarity=0.629 Sum_probs=29.3
Q ss_pred ccCCccChhhHH-HHhhcCcccccCcccccCCCCc
Q 007796 417 SCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVP 450 (589)
Q Consensus 417 ~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~p 450 (589)
+|||=|=..=|+ -++.+-.|++|++.|+..-+++
T Consensus 150 kCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 150 KCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccchhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence 799999999999 5666789999999999777655
No 66
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=75.22 E-value=1.6 Score=35.14 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=27.0
Q ss_pred ccchhhccCCccChhhHHHHhhcCcccccCcccccCCC
Q 007796 411 DDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSL 448 (589)
Q Consensus 411 ~da~~~~cghsf~~~~~~~~~~~~~c~~c~~~~~~~~l 448 (589)
..-++++|||-.=..- =-..+++.|++|+.+++.++.
T Consensus 18 ~~~~~~pCgH~I~~~~-f~~~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 18 TKGTVLPCGHLICDNC-FPGERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred cccccccccceeeccc-cChhhccCCCCCCCcccCCCC
Confidence 3457889999654332 234578999999999998765
No 67
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=73.19 E-value=39 Score=33.90 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=30.3
Q ss_pred ceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEee
Q 007796 278 RWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRL 334 (589)
Q Consensus 278 ~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~ 334 (589)
.|+.|.|. +|.+||+-+-+ .|+|.+. ....+|+||+|=+
T Consensus 160 ~~~~v~P~--~G~lvlFPS~L------------~H~v~p~----~~~~~RISiSFNl 198 (201)
T TIGR02466 160 RFVYVPPQ--EGRVLLFESWL------------RHEVPPN----ESEEERISVSFNY 198 (201)
T ss_pred ccEEECCC--CCeEEEECCCC------------ceecCCC----CCCCCEEEEEEee
Confidence 58889888 99999887765 5998763 2357999999843
No 68
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=68.88 E-value=1.9 Score=43.07 Aligned_cols=35 Identities=31% Similarity=0.699 Sum_probs=28.3
Q ss_pred cccchhhccCCccChh-hHHHHhhcCcccccCcccc
Q 007796 410 LDDAMVVSCGHSFGGL-MLRKVIDTSRCTICSAEIE 444 (589)
Q Consensus 410 ~~da~~~~cghsf~~~-~~~~~~~~~~c~~c~~~~~ 444 (589)
.+..|+-.|||+|-+. .|++.++...|.+|.+.+-
T Consensus 206 y~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 206 YESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 3567788899999665 5678888999999999864
No 69
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.13 E-value=2 Score=45.38 Aligned_cols=38 Identities=24% Similarity=0.602 Sum_probs=31.5
Q ss_pred ccccccchhhccCCccChh-hHHHHhhcCcccccCcccc
Q 007796 407 GAFLDDAMVVSCGHSFGGL-MLRKVIDTSRCTICSAEIE 444 (589)
Q Consensus 407 g~~~~da~~~~cghsf~~~-~~~~~~~~~~c~~c~~~~~ 444 (589)
..-..+.|+.+|||.|=.. .|++.++...|.+|++.+-
T Consensus 248 r~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 248 RKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 4556788999999999544 5678888899999999875
No 70
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=67.27 E-value=3.1 Score=45.14 Aligned_cols=28 Identities=25% Similarity=0.581 Sum_probs=25.4
Q ss_pred hccCCccChhhHH-HHhhcCcccccCccc
Q 007796 416 VSCGHSFGGLMLR-KVIDTSRCTICSAEI 443 (589)
Q Consensus 416 ~~cghsf~~~~~~-~~~~~~~c~~c~~~~ 443 (589)
+||||=|-=.-|| |.-+.-+|+||+.|+
T Consensus 316 LpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 316 LPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred ccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 6899999888888 999999999999994
No 71
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.60 E-value=2.6 Score=42.99 Aligned_cols=45 Identities=29% Similarity=0.579 Sum_probs=35.2
Q ss_pred ccccchhhccCCccChhhH-HHHhhc---CcccccCcccccCCCCchHH
Q 007796 409 FLDDAMVVSCGHSFGGLML-RKVIDT---SRCTICSAEIETGSLVPNLA 453 (589)
Q Consensus 409 ~~~da~~~~cghsf~~~~~-~~~~~~---~~c~~c~~~~~~~~l~pn~~ 453 (589)
+-+|+|+-.|||=|==.=| ||+.-. +-|++|+..|+.+.|+|=|.
T Consensus 56 ~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 56 LAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred ccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3479999999999954444 566544 45689999999999999875
No 72
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.17 E-value=3.9 Score=42.77 Aligned_cols=84 Identities=19% Similarity=0.363 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcccCCCCCchhhhhcccCCCcccccccCCCccccccccchh-----hccCCccChhhHH-HHh--hcCc
Q 007796 364 SQFMDDLSAEEDGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMV-----VSCGHSFGGLMLR-KVI--DTSR 435 (589)
Q Consensus 364 ~df~~~r~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~lsdp~~g~~~~da~~-----~~cghsf~~~~~~-~~~--~~~~ 435 (589)
.++..++++...+.....+.++.. + ++|+=+|-..-+.-+.=||++| ++|+|+|--.-|| |.+ +..+
T Consensus 198 a~icsd~mAs~iGfYs~~glPtkh---l--~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqt 272 (328)
T KOG1734|consen 198 AEICSDYMASTIGFYSPSGLPTKH---L--SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQT 272 (328)
T ss_pred HHHHHHHHHHHhcccCCCCCCCCC---C--CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCC
Confidence 344555555555555555554411 1 2334344333333333455555 5899999999999 654 6789
Q ss_pred ccccCcccccCCCCchH
Q 007796 436 CTICSAEIETGSLVPNL 452 (589)
Q Consensus 436 c~~c~~~~~~~~l~pn~ 452 (589)
|+-|+..++...++-|.
T Consensus 273 CPYCKekVdl~rmfsnp 289 (328)
T KOG1734|consen 273 CPYCKEKVDLKRMFSNP 289 (328)
T ss_pred CchHHHHhhHhhhccCc
Confidence 99999999998887764
No 73
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.52 E-value=3.2 Score=47.43 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=28.4
Q ss_pred chhhccCCccChhhHH-HHhhcCcccccCcccc
Q 007796 413 AMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIE 444 (589)
Q Consensus 413 a~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~ 444 (589)
+-.++|||.|...-|+ |..+...|++|...+.
T Consensus 309 ~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 309 PKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 6677999999999999 9999999999999543
No 74
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=61.56 E-value=6.8 Score=31.97 Aligned_cols=38 Identities=18% Similarity=0.456 Sum_probs=29.7
Q ss_pred HhhcCcccccCcccccCCCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 007796 430 VIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKRR 479 (589)
Q Consensus 430 ~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~~~~~~~~~~~~~r~ 479 (589)
|---++|..|+++|..+ ++|..|+=++|..+.+.|+|+
T Consensus 5 v~PH~HC~VCg~aIp~d------------e~~CSe~C~eil~ker~R~r~ 42 (64)
T COG4068 5 VVPHRHCVVCGKAIPPD------------EQVCSEECGEILNKERKRQRN 42 (64)
T ss_pred CCCCccccccCCcCCCc------------cchHHHHHHHHHHHHHHHHHH
Confidence 44458999999999877 468999999998887555543
No 75
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=59.90 E-value=11 Score=32.91 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=24.6
Q ss_pred CceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEE
Q 007796 277 GRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAF 332 (589)
Q Consensus 277 G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~Siaf 332 (589)
..++.++|. +|.|||+-+.+ .|+|.+. ....+|+||+|
T Consensus 63 ~~~~~~~p~--~G~lvlFPs~l------------~H~v~p~----~~~~~Risisf 100 (101)
T PF13759_consen 63 SPYYIVEPE--EGDLVLFPSWL------------WHGVPPN----NSDEERISISF 100 (101)
T ss_dssp -SEEEE-----TTEEEEEETTS------------EEEE--------SSS-EEEEEE
T ss_pred CceEEeCCC--CCEEEEeCCCC------------EEeccCc----CCCCCEEEEEc
Confidence 468888888 99999999876 6999763 23468999998
No 76
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=59.42 E-value=10 Score=43.91 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=62.2
Q ss_pred cccccCCCccccccccchhhc-cCCccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHHHHhh
Q 007796 397 LRSVLSDPLSGAFLDDAMVVS-CGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~~-cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e 464 (589)
..+-+-||+.=.+|-|+|++| -|-+.+...|+ +++.-++=+--+.|++.+..+||-.||..+-.|++-
T Consensus 851 vPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~ 920 (929)
T COG5113 851 VPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYKC 920 (929)
T ss_pred CchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHhc
Confidence 445568999999999999997 89999999999 999999999999999999999999999999998875
No 77
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=55.13 E-value=13 Score=24.58 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=20.6
Q ss_pred ceeeccEeEEecCCCCCcccccceeeeeee
Q 007796 513 PFSVNEKVLIKGNRRTPEKFVGKEAVITSQ 542 (589)
Q Consensus 513 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+|.+||+|.|.+- .|.|++++|.+-
T Consensus 1 ~~~~G~~V~I~~G-----~~~g~~g~i~~i 25 (28)
T smart00739 1 KFEVGDTVRVIAG-----PFKGKVGKVLEV 25 (28)
T ss_pred CCCCCCEEEEeEC-----CCCCcEEEEEEE
Confidence 4789999999874 489999998764
No 78
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=45.70 E-value=12 Score=41.53 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=43.3
Q ss_pred CCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCc
Q 007796 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTK 147 (589)
Q Consensus 84 ~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP 147 (589)
...-||.||++++.++. +.+.+.+.+++.|+++|.+. |+.+....-.+..++|....
T Consensus 46 G~~~IP~i~f~di~~~~------~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~~n 102 (416)
T PF07350_consen 46 GSSIIPEIDFADIENGG------VSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLKAN 102 (416)
T ss_dssp T--SS-EEEHHHHHCT---------HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCceeeHHHHhCCC------CCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHHhC
Confidence 45679999999986532 34667888899999999999 99999999999999998754
No 79
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=45.20 E-value=24 Score=38.03 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=45.1
Q ss_pred cccCCCccccccccchhh-ccCCccChhhH-HHHhhcCcccccCccccc----CCCCchHHHHHHHHH
Q 007796 399 SVLSDPLSGAFLDDAMVV-SCGHSFGGLML-RKVIDTSRCTICSAEIET----GSLVPNLALRAAAVA 460 (589)
Q Consensus 399 ~~lsdp~~g~~~~da~~~-~cghsf~~~~~-~~~~~~~~c~~c~~~~~~----~~l~pn~~lr~~~~~ 460 (589)
..+..++=+-+|.||--+ -|=|||=..=| +++.+..+|+.|+..|-- ..|.+.-+|+..+.-
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHH
Confidence 445677777777777655 59999976655 488888999999998763 345566667766654
No 80
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.93 E-value=6.5 Score=31.78 Aligned_cols=32 Identities=38% Similarity=0.717 Sum_probs=22.2
Q ss_pred cchhhccCCc---cChhhHH-HHhhcCcccccCcccc
Q 007796 412 DAMVVSCGHS---FGGLMLR-KVIDTSRCTICSAEIE 444 (589)
Q Consensus 412 da~~~~cghs---f~~~~~~-~~~~~~~c~~c~~~~~ 444 (589)
|.|+..|||- |..+ |+ |.--...|+||+++|.
T Consensus 19 dsVlYtCGHMCmCy~Cg-~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 19 DSVLYTCGHMCMCYACG-LRLKKALHGCCPICRAPIK 54 (62)
T ss_pred hHHHHHcchHHhHHHHH-HHHHHccCCcCcchhhHHH
Confidence 6688899996 4444 34 3335678999998864
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=43.50 E-value=11 Score=41.97 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=40.5
Q ss_pred ccccccccchhhc-cCCccChhhHH-HHhhcCcccccCcccccCCCCc
Q 007796 405 LSGAFLDDAMVVS-CGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVP 450 (589)
Q Consensus 405 ~~g~~~~da~~~~-cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~p 450 (589)
+||++=+++||++ -||=|-.--|+ .+.|++.|+|.+++++++.|.|
T Consensus 5 ISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 5 ISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVE 52 (506)
T ss_pred ccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeee
Confidence 6899999999996 99999988887 7789999999999988776654
No 82
>PHA02926 zinc finger-like protein; Provisional
Probab=43.09 E-value=13 Score=38.10 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=25.9
Q ss_pred hhhccCCccChhhHH-HHhh------cCcccccCcccccCCCCchH
Q 007796 414 MVVSCGHSFGGLMLR-KVID------TSRCTICSAEIETGSLVPNL 452 (589)
Q Consensus 414 ~~~~cghsf~~~~~~-~~~~------~~~c~~c~~~~~~~~l~pn~ 452 (589)
++.+|+|+|=-.=|+ |... ...||+|+..+. .+.|+-
T Consensus 193 IL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pSr 236 (242)
T PHA02926 193 LLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMSK 236 (242)
T ss_pred ccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eecccc
Confidence 455899999887777 5542 235999999866 455543
No 83
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=42.16 E-value=29 Score=35.79 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=39.2
Q ss_pred ccCCccChhhHHHHhh---cCccc--ccCcccccCCCC--chHHHHHHHHHHHhhhhhh
Q 007796 417 SCGHSFGGLMLRKVID---TSRCT--ICSAEIETGSLV--PNLALRAAAVAIKQEDDRR 468 (589)
Q Consensus 417 ~cghsf~~~~~~~~~~---~~~c~--~c~~~~~~~~l~--pn~~lr~~~~~~~~e~~~~ 468 (589)
+|-|-|...+|++.++ +-.|+ +|++.+....+. |-+-+|.+.+-+|+-+++.
T Consensus 207 kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir~sqeq~ 265 (275)
T COG5627 207 KCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIRNSQEQI 265 (275)
T ss_pred hhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHHhhhhhh
Confidence 6999999999997776 56788 899887655553 5577777777777766653
No 84
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=40.74 E-value=13 Score=29.28 Aligned_cols=23 Identities=22% Similarity=0.638 Sum_probs=19.5
Q ss_pred ccCCccChhhHHHHhhcCccccc
Q 007796 417 SCGHSFGGLMLRKVIDTSRCTIC 439 (589)
Q Consensus 417 ~cghsf~~~~~~~~~~~~~c~~c 439 (589)
.|||+|-...-.|+.....|+.|
T Consensus 33 ~Cgh~w~~~v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhhccCCCCCCCC
Confidence 69999998765588889999987
No 85
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.18 E-value=13 Score=40.27 Aligned_cols=68 Identities=26% Similarity=0.315 Sum_probs=42.8
Q ss_pred HHHhhcccCCCCCchhhhhcccCCCcccccccCCCccccccccchhhccCCccChhhHHHHhh--cCcccccCcccc
Q 007796 370 LSAEEDGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID--TSRCTICSAEIE 444 (589)
Q Consensus 370 r~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~~~--~~~c~~c~~~~~ 444 (589)
.+.+.|+..|........ . ..+.+.+=|+.- |+ --|.+|+||=|-==+.+=-+.++ .-+|+||+++|+
T Consensus 267 ~LqEiyGien~~v~~~~~--~-~~~~gkeCVICl--se--~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 267 LLQEIYGIENSTVEGTDA--D-ESESGKECVICL--SE--SRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred eeehhhccccCCCCCCcc--c-cccCCCeeEEEe--cC--CcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 345556666555433221 2 445555555442 22 14889999999877666555555 677999999987
No 86
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.01 E-value=18 Score=38.52 Aligned_cols=42 Identities=21% Similarity=0.467 Sum_probs=30.1
Q ss_pred cchhhccCCccChhhHH--HHhhcCcccccCcccccC-CCCchHH
Q 007796 412 DAMVVSCGHSFGGLMLR--KVIDTSRCTICSAEIETG-SLVPNLA 453 (589)
Q Consensus 412 da~~~~cghsf~~~~~~--~~~~~~~c~~c~~~~~~~-~l~pn~~ 453 (589)
=.+++.|+|-|=-.-|| -...|..|..|..+|+.. .+-|.+-
T Consensus 19 ~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~ 63 (324)
T KOG0824|consen 19 CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLK 63 (324)
T ss_pred cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhhh
Confidence 35778999999877777 334567799999999843 3334433
No 87
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.16 E-value=7.9 Score=40.98 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=21.0
Q ss_pred cchhhccCCccChhhHHHHhhcCcccccCccc
Q 007796 412 DAMVVSCGHSFGGLMLRKVIDTSRCTICSAEI 443 (589)
Q Consensus 412 da~~~~cghsf~~~~~~~~~~~~~c~~c~~~~ 443 (589)
|-++++|||..-... ==++|.-|+||++-|
T Consensus 312 DCvfLeCGHmVtCt~--CGkrm~eCPICRqyi 341 (350)
T KOG4275|consen 312 DCVFLECGHMVTCTK--CGKRMNECPICRQYI 341 (350)
T ss_pred ceEEeecCcEEeehh--hccccccCchHHHHH
Confidence 668889999876542 224556899888754
No 88
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=35.71 E-value=13 Score=41.35 Aligned_cols=21 Identities=24% Similarity=0.831 Sum_probs=19.1
Q ss_pred CCCccccccccchhhccCCcc
Q 007796 402 SDPLSGAFLDDAMVVSCGHSF 422 (589)
Q Consensus 402 sdp~~g~~~~da~~~~cghsf 422 (589)
.-|+-|.|.+|++|++|||+.
T Consensus 6 kc~vc~~f~~epiil~c~h~l 26 (699)
T KOG4367|consen 6 KCPVCGSFYREPIILPCSHNL 26 (699)
T ss_pred cCceehhhccCceEeecccHH
Confidence 568899999999999999974
No 89
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.88 E-value=23 Score=37.54 Aligned_cols=42 Identities=14% Similarity=0.353 Sum_probs=34.9
Q ss_pred ccccccchhhccCCccChhhHH-HHhhcCcccccCcccccCCC
Q 007796 407 GAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSL 448 (589)
Q Consensus 407 g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l 448 (589)
-+.+.|.---||||=|=-.=|. |..+..-|+.|+.+.+...+
T Consensus 246 Le~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 246 LENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred ecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 4566777778999999877666 99999999999999886654
No 90
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=33.13 E-value=26 Score=29.32 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=10.7
Q ss_pred cCceEEEEeeCCC
Q 007796 544 LNGWYLLNIIGSG 556 (589)
Q Consensus 544 ~~~~~~~~~~~~~ 556 (589)
-||||+||+-.|-
T Consensus 18 ~~Gf~~vrqkGSH 30 (66)
T COG1724 18 KDGFQLVRQKGSH 30 (66)
T ss_pred hCCcEEEEeecce
Confidence 4899999987764
No 91
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=31.20 E-value=84 Score=24.10 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=38.4
Q ss_pred ceeeccEeEEecCCCCCcccccceeeeeeeccCceEEEEeeCCCceehhhhhhHHhhh
Q 007796 513 PFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRSLRKIL 570 (589)
Q Consensus 513 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (589)
+|.||+.|+.+-+ =.+| -.|.|+.---+++|.|+-+|-|.+..+..-+|+.+.
T Consensus 2 ~~~~G~~~~a~~~---d~~w--yra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWE---DGEW--YRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeC---CCCE--EEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 6889999999851 1111 246777666669999999998888887777776554
No 92
>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....
Probab=31.11 E-value=71 Score=28.77 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=19.3
Q ss_pred ceeeccEeEEecCCC----CC-cccccceeeee--eeccCce
Q 007796 513 PFSVNEKVLIKGNRR----TP-EKFVGKEAVIT--SQCLNGW 547 (589)
Q Consensus 513 pf~~~~~~~~~~~~~----~~-~~~~~~~~~~~--~~~~~~~ 547 (589)
-|.+||+|-|++|-. .| .+|-||--+|. +|+--|=
T Consensus 32 ~yk~GD~V~I~id~sv~kGmPh~~yHGkTG~V~~v~~~~~G~ 73 (99)
T PF01157_consen 32 EYKVGDKVDIKIDPSVHKGMPHKRYHGKTGRVFNVTKGARGV 73 (99)
T ss_dssp ---TT-EEEE---TTSSSSS--GGGTTEEEEEEEE-SSCEEE
T ss_pred HccCCCEEEEEecCccccCCCcceECCCceeEEEeCCCceEE
Confidence 599999999999954 33 47889988887 4555555
No 93
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=30.72 E-value=2.1e+02 Score=32.76 Aligned_cols=27 Identities=0% Similarity=-0.047 Sum_probs=17.8
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHh
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSG 113 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~ 113 (589)
-..++.++...+.++ +.|..+.++|++
T Consensus 478 G~ql~~ve~t~~~~~--dgR~~LmaqIRq 504 (569)
T KOG3671|consen 478 GGQLKKVETTALSSG--DGRDALMAQIRQ 504 (569)
T ss_pred cccccceeeccCcCc--ccHHHHHHHHHh
Confidence 456777777776543 367777777774
No 94
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=30.29 E-value=56 Score=26.77 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=19.4
Q ss_pred cCcccccCcccccCCCCchHHHHHHHHHHHhhhhhhhhhh
Q 007796 433 TSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHN 472 (589)
Q Consensus 433 ~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~~~~~~~~ 472 (589)
-++|+.|+.+|..+ ++|..++=++.+.+
T Consensus 3 HkHC~~CG~~Ip~~------------~~fCS~~C~~~~~k 30 (59)
T PF09889_consen 3 HKHCPVCGKPIPPD------------ESFCSPKCREEYRK 30 (59)
T ss_pred CCcCCcCCCcCCcc------------hhhhCHHHHHHHHH
Confidence 37899999988743 56776665555555
No 95
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.05 E-value=30 Score=36.96 Aligned_cols=34 Identities=24% Similarity=0.550 Sum_probs=27.4
Q ss_pred ccchhhccCCccChhhHH-HHhhc-CcccccCcccc
Q 007796 411 DDAMVVSCGHSFGGLMLR-KVIDT-SRCTICSAEIE 444 (589)
Q Consensus 411 ~da~~~~cghsf~~~~~~-~~~~~-~~c~~c~~~~~ 444 (589)
|.-|++||-|-|-.+-+. |+..+ -.|++|+-+|-
T Consensus 337 d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 337 DRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 557889999999887777 88855 57999998763
No 96
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.87 E-value=21 Score=33.69 Aligned_cols=14 Identities=43% Similarity=0.734 Sum_probs=10.4
Q ss_pred ccCCccChhhHHHH
Q 007796 417 SCGHSFGGLMLRKV 430 (589)
Q Consensus 417 ~cghsf~~~~~~~~ 430 (589)
.||||||.---.|.
T Consensus 74 ecghsf~d~r~nwk 87 (165)
T COG4647 74 ECGHSFGDYRENWK 87 (165)
T ss_pred eccccccChhhCce
Confidence 79999998763343
No 97
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=29.73 E-value=23 Score=32.47 Aligned_cols=19 Identities=21% Similarity=0.495 Sum_probs=15.9
Q ss_pred CcccccCcccccCCCCchH
Q 007796 434 SRCTICSAEIETGSLVPNL 452 (589)
Q Consensus 434 ~~c~~c~~~~~~~~l~pn~ 452 (589)
-.|+.|+--++...++|-+
T Consensus 75 yyCP~Cgt~levE~~~Pg~ 93 (112)
T PF08882_consen 75 YYCPGCGTQLEVEAPPPGY 93 (112)
T ss_pred EECCCCcceeEEccCCCCC
Confidence 4799999999988888865
No 98
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=29.42 E-value=88 Score=30.44 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=30.5
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCC
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSE 128 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV 128 (589)
...||++++.... -.++++.+.+++.+...+.+.|||+
T Consensus 118 ~~~v~v~~~~~~g------~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 118 LKKIPILPFRPAG------SVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CCCEeeecCCCCC------cHHHHHHHHHHhccCCEEEEcCCCC
Confidence 5689999876531 2467888999999999999999996
No 99
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=28.59 E-value=31 Score=35.96 Aligned_cols=39 Identities=23% Similarity=0.572 Sum_probs=31.8
Q ss_pred CCCccccccccchhh-ccCCccChhhHHHHhhc---Cccc--ccC
Q 007796 402 SDPLSGAFLDDAMVV-SCGHSFGGLMLRKVIDT---SRCT--ICS 440 (589)
Q Consensus 402 sdp~~g~~~~da~~~-~cghsf~~~~~~~~~~~---~~c~--~c~ 440 (589)
.||+|-+...-.||+ +|||=|...+|..++.. -+|+ -|.
T Consensus 178 rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 178 RDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 788998888899999 59999999998877654 5677 455
No 100
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=28.05 E-value=62 Score=26.08 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=16.2
Q ss_pred eeeeeeecc-CceEEEEeeCCCceehhh
Q 007796 536 EAVITSQCL-NGWYLLNIIGSGENVRLQ 562 (589)
Q Consensus 536 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 562 (589)
+++|+ .++ ||||+|+. ++|+-++-.
T Consensus 4 ~G~Vi-~~~~g~~~~V~~-~~g~~~~c~ 29 (64)
T cd04451 4 EGVVT-EALPNAMFRVEL-ENGHEVLAH 29 (64)
T ss_pred EEEEE-EEeCCCEEEEEe-CCCCEEEEE
Confidence 34554 478 69999986 555554443
No 101
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=27.95 E-value=71 Score=23.98 Aligned_cols=29 Identities=14% Similarity=0.429 Sum_probs=20.2
Q ss_pred cceeeccEeEEecCCCCCcccccceeeeeeeccCceEEEEeeCCCc
Q 007796 512 YPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGE 557 (589)
Q Consensus 512 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (589)
..|..||+|.|- ...-+|||.+|.+++++
T Consensus 14 Ls~~~Gd~i~v~-----------------~~~~~~Ww~~~~~~~~~ 42 (48)
T PF00018_consen 14 LSFKKGDIIEVL-----------------EKSDDGWWKVRNESTGK 42 (48)
T ss_dssp SEB-TTEEEEEE-----------------EESSSSEEEEEETTTTE
T ss_pred EeEECCCEEEEE-----------------EecCCCEEEEEECCCCc
Confidence 367777777653 44556999999988754
No 102
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=27.62 E-value=1.1e+02 Score=36.72 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhHH
Q 007796 451 NLALRAAAVAIKQEDDRRLFHNAA 474 (589)
Q Consensus 451 n~~lr~~~~~~~~e~~~~~~~~~~ 474 (589)
|..|-+.+.+.++-++-+..+.++
T Consensus 987 naf~ea~~en~krRee~Ek~rr~k 1010 (1102)
T KOG1924|consen 987 NAFLEAVAENEKRREEEEKERRAK 1010 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444443344443
No 103
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=27.08 E-value=48 Score=36.55 Aligned_cols=58 Identities=24% Similarity=0.494 Sum_probs=44.2
Q ss_pred cccCCCccccccccchhh-ccCCccChhhHH-HHhhcCcccccCcccccCCCCc--hHHHHH
Q 007796 399 SVLSDPLSGAFLDDAMVV-SCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVP--NLALRA 456 (589)
Q Consensus 399 ~~lsdp~~g~~~~da~~~-~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~p--n~~lr~ 456 (589)
.=|..|+=...+.|++.. .|||.|...-|. +..+...|+.|..++...-+.| |..-|.
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~ 81 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRE 81 (391)
T ss_pred ccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHH
Confidence 334778888889999995 999999998877 7777899999988877555544 444443
No 104
>PRK08130 putative aldolase; Validated
Probab=25.52 E-value=1.1e+02 Score=30.49 Aligned_cols=38 Identities=21% Similarity=0.079 Sum_probs=30.2
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCC
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSE 128 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV 128 (589)
...||++++... .-.++++.+.+++.+...+++.|||+
T Consensus 125 ~g~i~v~~y~~~------g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 125 VGHVPLIPYYRP------GDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred cCccceECCCCC------ChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 457999877643 12467888999999999999999996
No 105
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.91 E-value=33 Score=23.47 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=9.9
Q ss_pred cccchhhc-cCCccC
Q 007796 410 LDDAMVVS-CGHSFG 423 (589)
Q Consensus 410 ~~da~~~~-cghsf~ 423 (589)
-.++.+=| |||+|.
T Consensus 11 ~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 11 PESAKFCPHCGYDFE 25 (26)
T ss_pred hhhcCcCCCCCCCCc
Confidence 34556666 999996
No 106
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=23.68 E-value=54 Score=28.14 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=29.0
Q ss_pred eeeeeeccCceEEEEeeCCCceehhhhhhHHhhhCC
Q 007796 537 AVITSQCLNGWYLLNIIGSGENVRLQYRSLRKILNS 572 (589)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (589)
|+|+.---+++|.|..+|-|.++.+....|+.+...
T Consensus 71 a~I~~~~~~~~~~V~~iD~G~~~~v~~~~l~~l~~~ 106 (121)
T PF00567_consen 71 AVITVDIDENQYKVFLIDYGNTEKVSASDLRPLPPE 106 (121)
T ss_dssp EEEEEEECTTEEEEEETTTTEEEEEEGGGEEE--HH
T ss_pred EEEEEecccceeEEEEEecCceEEEcHHHhhhhCHH
Confidence 445677789999999999999999999999888743
No 107
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=61 Score=35.99 Aligned_cols=39 Identities=28% Similarity=0.578 Sum_probs=28.7
Q ss_pred ccccccchhhccCCccChhhHHHHh-hcCcccccCccccc
Q 007796 407 GAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIET 445 (589)
Q Consensus 407 g~~~~da~~~~cghsf~~~~~~~~~-~~~~c~~c~~~~~~ 445 (589)
-.++.+.+..||||||-.-=|.+.. +..-|++|..++-.
T Consensus 91 ~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 91 SRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred HhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3456677778999999986544433 56889999999763
No 108
>PF09629 YorP: YorP protein; InterPro: IPR018591 This entry is represented by Bacteriophage SP-beta, YorP. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. YorP is a 71 residue protein. The structure is of an alpha helix between two of five beta strands. The function is unknown. ; PDB: 2HEQ_A.
Probab=23.30 E-value=68 Score=26.52 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=19.2
Q ss_pred ceeeccEeEEecCCCC-CcccccceeeeeeeccCce
Q 007796 513 PFSVNEKVLIKGNRRT-PEKFVGKEAVITSQCLNGW 547 (589)
Q Consensus 513 pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 547 (589)
-|-+|+.|+|--|-|- =.-||||+-+|-. -||-|
T Consensus 6 sY~~~~~VeIN~NAkyg~P~~VG~kG~IIe-~l~S~ 40 (71)
T PF09629_consen 6 SYPLGLEVEINSNAKYGCPHHVGRKGKIIE-KLHSA 40 (71)
T ss_dssp -S-TT-EEEE-TT-TTTSTT--SSEEEEEE-E---S
T ss_pred ccCCCCEEEEcCcccccCccccccccchhh-hhhhh
Confidence 3568999999999764 4689999998864 46666
No 109
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=23.17 E-value=34 Score=30.42 Aligned_cols=31 Identities=32% Similarity=0.682 Sum_probs=23.9
Q ss_pred ccccchhhccCCccChhhHHHHhhcCcccccCcc
Q 007796 409 FLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAE 442 (589)
Q Consensus 409 ~~~da~~~~cghsf~~~~~~~~~~~~~c~~c~~~ 442 (589)
+|.-|.--+||--|.. .+|+.-|+|+.|+-+
T Consensus 55 lv~Pa~CkkCGfef~~---~~ik~pSRCP~CKSE 85 (97)
T COG3357 55 LVRPARCKKCGFEFRD---DKIKKPSRCPKCKSE 85 (97)
T ss_pred EecChhhcccCccccc---cccCCcccCCcchhh
Confidence 3444555589999997 457889999999866
No 110
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=21.81 E-value=5.4e+02 Score=26.65 Aligned_cols=93 Identities=12% Similarity=0.057 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhhhhcCc-----EEEEEc------CCCCHHHHHHHHHHHHHHhcCcccCCCCCCcccccccCCcCCCCCC
Q 007796 103 PYLKAVEALSGSLMRHN-----AAVIEL------GSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRAGRALEDWD 171 (589)
Q Consensus 103 ~r~~~v~~L~~A~~~~G-----FF~L~n------hGV~~ell~~a~~~ar~FF~LP~Ee~~~~~rGyY~~~~ge~lddWP 171 (589)
.+.+++++|.+...+.| |++|+. ||++.+.+.+..+..+++-+|. -+| -|..+. +-
T Consensus 101 Dr~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L~-------l~G-LM~ipp-----~~ 167 (228)
T COG0325 101 DRLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNLE-------LRG-LMTIPP-----LT 167 (228)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEEEecCCccccCCCCHHHHHHHHHHHHhCCCCe-------EeE-EEeeCC-----CC
Confidence 46677777777666666 456666 4566666666666666654444 346 343222 22
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH----HHhCCCChhHHhh
Q 007796 172 SSPPCMADIFRCMGKAARAALFAI----ARHLRLRSDVFNH 208 (589)
Q Consensus 172 ~~P~~m~~y~~~m~kla~~LL~aI----A~~LGL~~~~F~~ 208 (589)
..|.....+|+.+.++...+.... ..++|+..||-..
T Consensus 168 ~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMGMS~D~e~A 208 (228)
T COG0325 168 DDPEEIFAVFRKLRKLFDELKAKYPPIDELSMGMSNDYEIA 208 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCeecCcCcccHHHH
Confidence 246788889999988888887753 2567776665443
No 111
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.55 E-value=46 Score=36.32 Aligned_cols=35 Identities=17% Similarity=0.431 Sum_probs=28.0
Q ss_pred ccchhhccCCccChhhH-HHHhhcCcccccCccccc
Q 007796 411 DDAMVVSCGHSFGGLML-RKVIDTSRCTICSAEIET 445 (589)
Q Consensus 411 ~da~~~~cghsf~~~~~-~~~~~~~~c~~c~~~~~~ 445 (589)
..||+-||||---.+-| |+++..++|.-|+.-+..
T Consensus 433 i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 433 INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred chhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 45799999997544443 699999999999988764
No 112
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.11 E-value=27 Score=25.24 Aligned_cols=27 Identities=26% Similarity=0.580 Sum_probs=17.9
Q ss_pred ccCCccChhhHHHHhhcCcccccCccc
Q 007796 417 SCGHSFGGLMLRKVIDTSRCTICSAEI 443 (589)
Q Consensus 417 ~cghsf~~~~~~~~~~~~~c~~c~~~~ 443 (589)
.|||.|--..-...-+...|+.|+.++
T Consensus 10 ~Cg~~fe~~~~~~~~~~~~CP~Cg~~~ 36 (41)
T smart00834 10 DCGHTFEVLQKISDDPLATCPECGGDV 36 (41)
T ss_pred CCCCEEEEEEecCCCCCCCCCCCCCcc
Confidence 599988644311224667899999864
No 113
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.81 E-value=48 Score=23.57 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=16.4
Q ss_pred ccCCccChhhHHHHhhcCcccccCcc
Q 007796 417 SCGHSFGGLMLRKVIDTSRCTICSAE 442 (589)
Q Consensus 417 ~cghsf~~~~~~~~~~~~~c~~c~~~ 442 (589)
.|||.+.... ...+|++|+.+
T Consensus 6 ~CGy~y~~~~-----~~~~CP~Cg~~ 26 (33)
T cd00350 6 VCGYIYDGEE-----APWVCPVCGAP 26 (33)
T ss_pred CCCCEECCCc-----CCCcCcCCCCc
Confidence 4999887553 67799999886
Done!