Query 007796
Match_columns 589
No_of_seqs 181 out of 1362
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oox_A Putative 2OG-Fe(II) oxy 100.0 1E-56 3.4E-61 466.0 24.4 266 84-375 3-310 (312)
2 1gp6_A Leucoanthocyanidin diox 100.0 1.5E-55 5E-60 465.4 27.5 266 86-375 45-346 (356)
3 1w9y_A 1-aminocyclopropane-1-c 100.0 7.2E-55 2.4E-59 454.0 22.8 263 86-375 2-294 (319)
4 1odm_A Isopenicillin N synthas 100.0 6.9E-54 2.4E-58 448.2 22.7 266 80-375 1-325 (331)
5 1dcs_A Deacetoxycephalosporin 100.0 3.7E-53 1.3E-57 439.5 17.3 261 85-375 2-306 (311)
6 3on7_A Oxidoreductase, iron/as 100.0 4.4E-51 1.5E-55 418.3 24.6 248 86-375 2-278 (280)
7 2kr4_A Ubiquitin conjugation f 99.1 4.1E-11 1.4E-15 101.5 4.8 69 397-465 11-80 (85)
8 2kre_A Ubiquitin conjugation f 99.0 9.7E-11 3.3E-15 102.4 4.0 70 396-465 25-95 (100)
9 1wgm_A Ubiquitin conjugation f 99.0 1.4E-10 4.9E-15 100.9 3.5 71 396-466 18-90 (98)
10 2f42_A STIP1 homology and U-bo 98.8 1.7E-09 5.6E-14 104.1 4.8 71 394-464 100-172 (179)
11 1t1h_A Gspef-atpub14, armadill 98.8 1.3E-09 4.4E-14 89.6 2.6 70 396-465 4-75 (78)
12 2yu4_A E3 SUMO-protein ligase 98.8 1.5E-09 5.3E-14 93.3 2.8 69 396-464 3-82 (94)
13 2c2l_A CHIP, carboxy terminus 98.6 2.2E-08 7.5E-13 99.9 4.6 67 398-464 206-274 (281)
14 3ztg_A E3 ubiquitin-protein li 98.4 3.4E-07 1.2E-11 77.4 5.1 73 394-466 7-84 (92)
15 2bay_A PRE-mRNA splicing facto 98.3 2.3E-07 7.8E-12 74.0 1.6 54 401-454 4-59 (61)
16 2y43_A E3 ubiquitin-protein li 98.0 2.1E-06 7.2E-11 73.6 3.4 71 396-466 18-90 (99)
17 3htk_C E3 SUMO-protein ligase 98.0 2.6E-06 8.9E-11 86.3 3.6 67 397-463 178-250 (267)
18 1jm7_B BARD1, BRCA1-associated 97.9 7.5E-06 2.6E-10 72.5 5.0 69 397-466 19-88 (117)
19 3fl2_A E3 ubiquitin-protein li 97.9 6.4E-06 2.2E-10 73.5 3.7 71 396-466 48-121 (124)
20 2ckl_A Polycomb group ring fin 97.8 1.5E-05 5E-10 69.5 4.6 70 396-465 11-86 (108)
21 1z6u_A NP95-like ring finger p 97.8 1.3E-05 4.3E-10 74.6 4.2 71 396-466 74-147 (150)
22 1jm7_A BRCA1, breast cancer ty 97.7 1.2E-05 4.1E-10 69.9 2.7 68 397-464 18-89 (112)
23 3m62_A Ubiquitin conjugation f 97.7 2E-05 6.7E-10 91.9 4.4 68 398-465 889-958 (968)
24 2ecv_A Tripartite motif-contai 97.6 2.4E-05 8.3E-10 64.1 2.0 61 396-456 15-82 (85)
25 3hct_A TNF receptor-associated 97.5 4.2E-05 1.4E-09 67.7 3.2 69 394-462 12-82 (118)
26 2ecw_A Tripartite motif-contai 97.5 2.6E-05 9E-10 63.9 1.6 60 397-456 16-82 (85)
27 3lrq_A E3 ubiquitin-protein li 97.5 3.9E-05 1.3E-09 66.2 2.7 71 395-465 17-90 (100)
28 2egp_A Tripartite motif-contai 97.5 1.3E-05 4.5E-10 65.3 -0.4 60 397-456 9-76 (79)
29 2ckl_B Ubiquitin ligase protei 97.4 5.6E-05 1.9E-09 70.6 2.8 74 394-467 48-125 (165)
30 2csy_A Zinc finger protein 183 97.3 7.3E-05 2.5E-09 61.6 2.3 56 398-454 13-69 (81)
31 2djb_A Polycomb group ring fin 97.3 0.00013 4.3E-09 58.9 3.3 60 394-453 9-70 (72)
32 4ayc_A E3 ubiquitin-protein li 97.2 8.4E-05 2.9E-09 67.6 1.3 59 401-461 54-113 (138)
33 3l11_A E3 ubiquitin-protein li 97.2 0.0002 6.8E-09 62.8 3.2 66 400-465 15-89 (115)
34 2yur_A Retinoblastoma-binding 97.0 0.00042 1.4E-08 56.2 3.9 58 395-452 10-72 (74)
35 3hcs_A TNF receptor-associated 97.0 0.00028 9.7E-09 66.0 2.6 67 394-460 12-80 (170)
36 3ng2_A RNF4, snurf, ring finge 96.9 0.00029 1E-08 56.0 1.9 39 414-452 31-70 (71)
37 1rmd_A RAG1; V(D)J recombinati 96.9 0.00059 2E-08 59.9 3.6 58 394-451 17-76 (116)
38 2ecy_A TNF receptor-associated 96.9 0.00067 2.3E-08 53.5 3.5 53 397-449 12-66 (66)
39 2xeu_A Ring finger protein 4; 96.7 0.00036 1.2E-08 54.1 1.1 39 414-452 24-63 (64)
40 2ct2_A Tripartite motif protei 96.5 0.00093 3.2E-08 55.2 2.4 60 395-454 10-80 (88)
41 1g25_A CDK-activating kinase a 96.3 0.0013 4.4E-08 51.7 1.7 39 414-452 22-62 (65)
42 2ysl_A Tripartite motif-contai 96.3 0.0022 7.4E-08 51.2 3.0 53 396-448 16-72 (73)
43 2ect_A Ring finger protein 126 96.1 0.0031 1.1E-07 51.1 3.1 39 413-451 31-70 (78)
44 3knv_A TNF receptor-associated 95.7 0.0032 1.1E-07 57.7 1.9 65 395-459 26-101 (141)
45 2ea6_A Ring finger protein 4; 95.6 0.0057 1.9E-07 47.9 2.6 43 403-445 18-68 (69)
46 2d8t_A Dactylidin, ring finger 95.4 0.0018 6E-08 51.9 -0.9 43 404-446 19-62 (71)
47 4ap4_A E3 ubiquitin ligase RNF 95.2 0.0046 1.6E-07 54.4 0.9 49 404-452 11-67 (133)
48 2kiz_A E3 ubiquitin-protein li 95.1 0.0083 2.9E-07 47.4 2.0 35 411-445 28-63 (69)
49 1chc_A Equine herpes virus-1 r 95.1 0.0095 3.3E-07 46.8 2.3 35 410-444 15-51 (68)
50 2ecn_A Ring finger protein 141 95.1 0.0044 1.5E-07 49.1 0.3 45 402-447 17-62 (70)
51 4ap4_A E3 ubiquitin ligase RNF 94.9 0.0054 1.9E-07 53.9 0.6 39 414-452 93-132 (133)
52 1x4j_A Ring finger protein 38; 94.9 0.012 4.2E-07 47.3 2.6 34 413-446 39-73 (75)
53 2ecm_A Ring finger and CHY zin 94.7 0.013 4.4E-07 44.0 2.2 32 413-444 22-54 (55)
54 1bor_A Transcription factor PM 94.7 0.011 3.6E-07 45.5 1.6 43 403-447 9-51 (56)
55 2ysj_A Tripartite motif-contai 94.6 0.017 5.8E-07 44.8 2.7 44 396-439 16-63 (63)
56 2ecj_A Tripartite motif-contai 94.6 0.017 5.9E-07 43.7 2.6 43 397-439 12-58 (58)
57 2l0b_A E3 ubiquitin-protein li 94.0 0.017 5.9E-07 48.5 1.6 33 413-445 56-89 (91)
58 1iym_A EL5; ring-H2 finger, ub 93.9 0.021 7.2E-07 42.9 1.8 32 413-444 21-54 (55)
59 2ep4_A Ring finger protein 24; 93.8 0.024 8.1E-07 45.3 2.0 33 413-445 31-64 (74)
60 2ecg_A Baculoviral IAP repeat- 92.3 0.064 2.2E-06 43.3 2.5 39 404-445 29-68 (75)
61 4ic3_A E3 ubiquitin-protein li 92.2 0.042 1.4E-06 44.4 1.3 38 404-444 28-66 (74)
62 2ecl_A Ring-box protein 2; RNF 91.9 0.034 1.2E-06 45.8 0.3 34 413-446 42-77 (81)
63 1e4u_A Transcriptional repress 91.7 0.16 5.6E-06 41.8 4.3 38 411-448 24-65 (78)
64 2hbt_A EGL nine homolog 1; pro 91.4 3.1 0.00011 41.3 14.0 173 105-335 13-212 (247)
65 2rg4_A Uncharacterized protein 90.0 2.3 7.8E-05 41.3 11.4 43 278-338 167-209 (216)
66 2vje_B MDM4 protein; proto-onc 89.8 0.095 3.2E-06 41.2 1.1 34 411-444 18-55 (63)
67 2yho_A E3 ubiquitin-protein li 89.8 0.056 1.9E-06 44.5 -0.2 48 404-454 22-73 (79)
68 2ea5_A Cell growth regulator w 89.1 0.17 5.9E-06 40.4 2.2 35 408-445 23-58 (68)
69 3dpl_R Ring-box protein 1; ubi 88.7 0.14 4.7E-06 44.8 1.5 31 414-444 69-100 (106)
70 2y1n_A E3 ubiquitin-protein li 88.7 0.16 5.6E-06 54.0 2.3 43 404-446 336-380 (389)
71 1v87_A Deltex protein 2; ring- 88.2 0.21 7.1E-06 43.1 2.3 30 415-444 58-93 (114)
72 2vje_A E3 ubiquitin-protein li 88.1 0.15 5E-06 40.2 1.1 35 410-444 18-56 (64)
73 4a0k_B E3 ubiquitin-protein li 82.7 0.25 8.5E-06 44.1 0.0 29 416-444 82-111 (117)
74 3i3q_A Alpha-ketoglutarate-dep 81.4 6.5 0.00022 38.2 9.6 86 223-335 106-202 (211)
75 3dkq_A PKHD-type hydroxylase S 81.3 2.6 8.8E-05 42.0 6.8 106 188-336 72-195 (243)
76 3t6p_A Baculoviral IAP repeat- 79.3 0.59 2E-05 48.9 1.4 40 402-444 297-337 (345)
77 2d8s_A Cellular modulator of i 77.9 1.1 3.9E-05 36.9 2.5 35 411-445 28-70 (80)
78 3s57_A Alpha-ketoglutarate-dep 74.2 12 0.0004 36.0 9.0 84 223-334 101-201 (204)
79 2iuw_A Alkylated repair protei 70.1 13 0.00043 36.6 8.2 86 223-336 127-230 (238)
80 3tht_A Alkylated DNA repair pr 62.1 14 0.00049 38.4 7.2 98 223-338 199-315 (345)
81 2ct0_A Non-SMC element 1 homol 57.5 5.3 0.00018 32.6 2.3 28 417-444 33-63 (74)
82 3i2d_A E3 SUMO-protein ligase 48.4 7.7 0.00026 41.0 2.4 65 397-461 246-316 (371)
83 1wim_A KIAA0161 protein; ring 46.6 3.4 0.00012 34.3 -0.5 26 417-442 25-61 (94)
84 3vk6_A E3 ubiquitin-protein li 41.0 10 0.00034 33.0 1.5 31 414-444 16-48 (101)
85 3k1l_B Fancl; UBC, ring, RWD, 39.0 9.7 0.00033 40.1 1.3 30 416-445 332-373 (381)
86 3itq_A Prolyl 4-hydroxylase, a 37.6 94 0.0032 30.0 8.1 156 119-336 40-212 (216)
87 3rdv_A CAP-Gly domain-containi 37.4 5.7 0.00019 32.4 -0.5 24 514-537 3-26 (72)
88 2gmg_A Hypothetical protein PF 34.6 10 0.00035 33.2 0.6 29 410-442 65-93 (105)
89 4fo9_A E3 SUMO-protein ligase 34.3 17 0.00056 38.3 2.2 62 396-457 211-278 (360)
90 2jig_A Prolyl-4 hydroxylase; h 30.2 1E+02 0.0034 29.3 6.9 48 279-337 170-218 (224)
91 1vq8_Q 50S ribosomal protein L 28.3 54 0.0019 28.1 4.1 35 513-547 33-72 (96)
92 2dbn_A Hypothetical protein YB 27.5 18 0.00062 39.2 1.1 57 84-147 97-153 (461)
93 4a17_P RPL21, 60S ribosomal pr 26.3 65 0.0022 30.0 4.5 41 513-553 33-89 (157)
94 2heq_A YORP protein; SH3-like, 26.0 62 0.0021 26.4 3.7 41 504-547 4-45 (84)
95 4ayb_P DNA-directed RNA polyme 25.9 15 0.00052 27.7 0.1 29 415-444 6-34 (48)
96 3p8d_A Medulloblastoma antigen 25.5 57 0.0019 26.2 3.4 57 513-575 6-62 (67)
97 2ftc_K 39S ribosomal protein L 22.8 62 0.0021 27.9 3.4 51 513-563 3-57 (98)
98 1vyx_A ORF K3, K3RING; zinc-bi 22.7 46 0.0016 25.6 2.4 33 412-444 18-58 (60)
99 1nz9_A Transcription antitermi 20.7 64 0.0022 24.4 2.8 52 512-568 3-57 (58)
No 1
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=100.00 E-value=1e-56 Score=466.00 Aligned_cols=266 Identities=21% Similarity=0.306 Sum_probs=225.3
Q ss_pred CCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC------CCCCcc
Q 007796 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV------GKGSRG 157 (589)
Q Consensus 84 ~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~------~~~~rG 157 (589)
++..||||||+.+.+ .+.+++++|.+||++||||||.||||+.++++++++.+++||+||.|++ ....+|
T Consensus 3 ~~~~iPvIDls~~~~----~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~G 78 (312)
T 3oox_A 3 STSAIDPVSFSLYAK----DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARG 78 (312)
T ss_dssp -CCSSCCEETHHHHH----CHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSE
T ss_pred CCCCCCeEEChHhcc----cHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccc
Confidence 467899999998743 5778999999999999999999999999999999999999999999873 123466
Q ss_pred cccccCCc--------------------C----------CCCCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCCh
Q 007796 158 VYMYRAGR--------------------A----------LEDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRS 203 (589)
Q Consensus 158 yY~~~~ge--------------------~----------lddWP~~-P---~~m~~y~~~m~kla~~LL~aIA~~LGL~~ 203 (589)
|.....+ . ..-||.. | +.+++|+++|.+++..||++||++|||++
T Consensus 79 -y~~~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~ 157 (312)
T 3oox_A 79 -YIPFGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLER 157 (312)
T ss_dssp -EECCCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred -cccccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 3321110 0 0018865 3 79999999999999999999999999999
Q ss_pred hHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCCceEEc
Q 007796 204 DVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLA 282 (589)
Q Consensus 204 ~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G~Wi~V 282 (589)
++|.+++++ + .+.+|++||||++.+. .+ .++++|||+|+||||+||. +||||++++|+|++|
T Consensus 158 ~~f~~~~~~-~------~~~lr~~~Ypp~~~~~-~~---------~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V 220 (312)
T 3oox_A 158 DFFKPTVQD-G------NSVLRLLHYPPIPKDA-TG---------VRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPI 220 (312)
T ss_dssp TTTHHHHTT-C------CCEEEEEEECCCSSCC-C-----------CEEEECCCSSEEEEECCTTSCEEEECTTSCEEEC
T ss_pred HHHHHHhcC-C------cceeeeEecCCCCCCc-CC---------cCccceecCceEEEEeEcCcCceEEECCCCcEEEC
Confidence 999999876 2 2589999999987542 11 3589999999999999995 999999999999999
Q ss_pred cCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCC-Cc
Q 007796 283 DGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYV-PI 361 (589)
Q Consensus 283 pp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~-pi 361 (589)
+|. ||++|||+||+|++||||+|+|+.|||+.+... ..+.+|||++||++|+.|++|.|+++++.. ++|++|+ ++
T Consensus 221 ~p~--pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~-~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~-~~p~~y~~~~ 296 (312)
T 3oox_A 221 NPP--PGCLVINIGDMLERLTNNVLPSTVHRVVNPPPE-RRGVPRYSTPFFLHFASDYEIKTLQNCVTA-ENPDRYPESI 296 (312)
T ss_dssp CCC--SSCEEEEECHHHHHHTTTSSCCCCEEECCCCGG-GTTSCEEECCEEECCCTTCEECCCGGGCCS-SSCCSCSSCE
T ss_pred CCC--CCeEEEEhHHHHHHHhCCeecCCCceEeCCCcc-CCCCCEEEEEEEecCCCCcEEecCccccCC-CCcccCCCCe
Confidence 998 999999999999999999999999999865211 124689999999999999999999999854 5799999 99
Q ss_pred cHHHHHHHHHHhhc
Q 007796 362 SVSQFMDDLSAEED 375 (589)
Q Consensus 362 t~~df~~~r~~~~~ 375 (589)
+++||+..++.+..
T Consensus 297 t~~eyl~~r~~~~~ 310 (312)
T 3oox_A 297 TADEFLQQRLREIK 310 (312)
T ss_dssp EHHHHHHHHHHHHC
T ss_pred eHHHHHHHHHHHhc
Confidence 99999999998643
No 2
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=1.5e-55 Score=465.38 Aligned_cols=266 Identities=18% Similarity=0.267 Sum_probs=227.6
Q ss_pred CCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC-------C-CCCcc
Q 007796 86 PRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-------G-KGSRG 157 (589)
Q Consensus 86 a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~-------~-~~~rG 157 (589)
..||+|||+.+.+++++.|.+++++|.+||++||||||.||||+.++++++++.+++||+||.|++ . ...+|
T Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~G 124 (356)
T 1gp6_A 45 PQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124 (356)
T ss_dssp CCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSE
T ss_pred CCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccc
Confidence 379999999997666667889999999999999999999999999999999999999999999872 1 24567
Q ss_pred cccccCCc----CCC------------------CCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhc
Q 007796 158 VYMYRAGR----ALE------------------DWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLD 211 (589)
Q Consensus 158 yY~~~~ge----~ld------------------dWP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld 211 (589)
|...... ..+ -||..+ +.+++|+++|.+++..||++||++|||++++|.++++
T Consensus 125 -y~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~ 203 (356)
T 1gp6_A 125 -YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVG 203 (356)
T ss_dssp -EECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTT
T ss_pred -cCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 3322110 000 188764 8999999999999999999999999999999999886
Q ss_pred CCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCCceEEccCCCCCCc
Q 007796 212 DTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGD 290 (589)
Q Consensus 212 ~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~ 290 (589)
.. .+..+.+|++|||+++.++. . + ++++|||+|+||||+||. +||||+. +|+|++|+|. ||+
T Consensus 204 ~~----~~~~~~lrl~~YPp~~~~~~--~---~-----g~~~HtD~g~lTlL~qd~v~GLQV~~-~g~Wi~V~p~--pga 266 (356)
T 1gp6_A 204 GL----EELLLQMKINYYPKCPQPEL--A---L-----GVEAHTDVSALTFILHNMVPGLQLFY-EGKWVTAKCV--PDS 266 (356)
T ss_dssp HH----HHCEEEEEEEEECCCSSTTT--C---C-----SEEEECCCSSEEEEEECSCCCEEEEE-TTEEEECCCC--TTC
T ss_pred cc----CCccceeeeeecCCCCCccc--c---c-----CcCCccCCCeEEEEEEcCCCCeEEec-CCcEEECcCC--CCe
Confidence 20 01236899999999875432 1 3 589999999999999995 9999995 8999999998 999
Q ss_pred EEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCc-EEecCcccccCCCCCCCCCCccHHHHHHH
Q 007796 291 LLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNA-ILDCSPIAAAGHVIPQSYVPISVSQFMDD 369 (589)
Q Consensus 291 lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~Da-vI~Plp~~vag~~~p~~y~pit~~df~~~ 369 (589)
+|||+||+|++||||+|+|++|||+.+ .+.+|||++||++|+.|+ +|.|+++++.. +.|++|+++|++||+..
T Consensus 267 lvVNiGD~l~~~TnG~~kS~~HRVv~~-----~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~-~~p~~y~~~t~~eyl~~ 340 (356)
T 1gp6_A 267 IVMHIGDTLEILSNGKYKSILHRGLVN-----KEKVRISWAVFCEPPKDKIVLKPLPEMVSV-ESPAKFPPRTFAQHIEH 340 (356)
T ss_dssp EEEEECHHHHHHTTTSSCCCCEEECCC-----SSCCEEEEEEEEECCTTTCEECCCGGGCCS-SSCCSSCCEEHHHHHHH
T ss_pred EEEEeccHHHHhcCCEeeccCceecCC-----CCCCEEEEEEeecCCCCCcEEeCChhhcCC-CCCccCCCccHHHHHHH
Confidence 999999999999999999999999975 357999999999999999 99999999853 57999999999999999
Q ss_pred HHHhhc
Q 007796 370 LSAEED 375 (589)
Q Consensus 370 r~~~~~ 375 (589)
++...+
T Consensus 341 ~~~~~~ 346 (356)
T 1gp6_A 341 KLFGKE 346 (356)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 887654
No 3
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=100.00 E-value=7.2e-55 Score=454.03 Aligned_cols=263 Identities=14% Similarity=0.157 Sum_probs=218.1
Q ss_pred CCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCCCC---CCccccccc
Q 007796 86 PRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK---GSRGVYMYR 162 (589)
Q Consensus 86 a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~~~---~~rGyY~~~ 162 (589)
..||||||+.+. ++++.+++++|.+||++||||||.||||+.++++++++.+++||+||.|++.. ..+| |...
T Consensus 2 ~~iPvIDls~l~---~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~~G-y~~~ 77 (319)
T 1w9y_A 2 ENFPIISLDKVN---GVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKA-LEGV 77 (319)
T ss_dssp CCCCEEEGGGGG---STTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred CCCCEEECcccC---cccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCC-CCcc
Confidence 469999999885 34688899999999999999999999999999999999999999999987311 1224 2211
Q ss_pred CCc---------------CC---CCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCc
Q 007796 163 AGR---------------AL---EDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEV 220 (589)
Q Consensus 163 ~ge---------------~l---ddWP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~ 220 (589)
..+ +. ..||..| +.+++|+++|.+++..||++||++|||++++|.+++++. .+.
T Consensus 78 ~~e~~~~d~ke~~~~~~~p~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~----~~~ 153 (319)
T 1w9y_A 78 QAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGS----KGP 153 (319)
T ss_dssp CCCGGGCCCCEEEEEEEESCCGGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTT----TCC
T ss_pred cccCCCCChhhheeeecCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCc----CCc
Confidence 110 01 1299764 799999999999999999999999999999999988641 012
Q ss_pred cceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecC--CCccceEcCCCceEEccCCCCCCcEEEEchhh
Q 007796 221 SSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD--SPGLQVCDPNGRWYLADGGSAPGDLLLITGKA 298 (589)
Q Consensus 221 ~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD--~~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~ 298 (589)
.+.+|++||||++.++. . + ++++|||+|+||||+|| .+||||+ .+|+|++|+|. ||++|||+||+
T Consensus 154 ~~~lrl~~YPp~~~~~~--~---~-----g~~~HtD~g~lTlL~qd~~v~GLQV~-~~g~Wi~V~p~--pgalvVNiGD~ 220 (319)
T 1w9y_A 154 NFGTKVSNYPPCPKPDL--I---K-----GLRAHTDAGGIILLFQDDKVSGLQLL-KDGQWIDVPPM--RHSIVVNLGDQ 220 (319)
T ss_dssp EEEEEEEECCCCSCGGG--G---S-----SCCCBCCSSSEEEEEESSSCCCEEEE-ETTEEEECCCC--TTCEEEEECHH
T ss_pred cceeEEEecCCCccccc--c---c-----ccccccCCCceEEEEecCCCCeeeEe-eCCeEEEcccC--CCcEEEEhHHH
Confidence 36899999999875422 1 3 58999999999999995 4999998 48899999998 99999999999
Q ss_pred hHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCC---CCCCCCCccHHHHHHHHHHhhc
Q 007796 299 LSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHV---IPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 299 Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~---~p~~y~pit~~df~~~r~~~~~ 375 (589)
|++||||+|+|+.|||+.+ .+.+|||++||++|+.|++|.|+++++.. + +|++|++++++||+..++...+
T Consensus 221 l~~~SnG~~kS~~HRVv~~-----~~~~R~Sia~F~~p~~d~~i~pl~~l~~~-~~~~~p~~Y~~~t~~ey~~~~~~~~~ 294 (319)
T 1w9y_A 221 LEVITNGKYKSVMHRVIAQ-----KDGARMSLASFYNPGSDAVIYPAPALVEK-EAEENKQVYPKFVFDDYMKLYAGLKF 294 (319)
T ss_dssp HHHHTTTSSCCCCEEECCC-----SSSCCEEEEEEEECCTTCEECCCGGGC---------CCCCCEEHHHHHHTTTTTTC
T ss_pred HHHHhCCeeecccceecCC-----CCCCceEEEEEecCCCCCeEeCchhhcCc-ccccCccccCcEeHHHHHHHHHhhhc
Confidence 9999999999999999974 35789999999999999999999999854 4 4899999999999988775443
No 4
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=100.00 E-value=6.9e-54 Score=448.24 Aligned_cols=266 Identities=13% Similarity=0.132 Sum_probs=221.9
Q ss_pred CCCCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHH-hcCcccCCCCC-Ccc
Q 007796 80 VATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLY-FRTKSQTVGKG-SRG 157 (589)
Q Consensus 80 ~~~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~F-F~LP~Ee~~~~-~rG 157 (589)
|++++...||||||+.+.+++++.+.+++++|.+||++||||||.|||| +++++++.+++| |+||.|++... .+|
T Consensus 1 m~s~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~~~~~~~~F~F~lP~eeK~~~~~~G 77 (331)
T 1odm_A 1 MGSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMSITPEEKWDLAIRA 77 (331)
T ss_dssp --CCCBCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHHHHHHHHHHHHHCCHHHHHHHBCTT
T ss_pred CCcccCCCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHHHHHHHHhccCCCCHHHHHhhhhcC
Confidence 4455667899999999977776788999999999999999999999999 999999999999 99999873110 023
Q ss_pred --------------------------cccccCC----------cCC---CCCCCC---h---HHHHHHHHHHHHHHHHHH
Q 007796 158 --------------------------VYMYRAG----------RAL---EDWDSS---P---PCMADIFRCMGKAARAAL 192 (589)
Q Consensus 158 --------------------------yY~~~~g----------e~l---ddWP~~---P---~~m~~y~~~m~kla~~LL 192 (589)
||..... ... ..||.. | +.+++|+++|.+++..||
T Consensus 78 y~~~~~e~~~~~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll 157 (331)
T 1odm_A 78 YNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALL 157 (331)
T ss_dssp TCTTCTTCSSSEEECCBTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCccccccccccccCCCCChhheEecccCCccccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 1111100 001 129975 3 899999999999999999
Q ss_pred HHHHHhCCCChhHHhhhhcCCCCCCCCccceEE--EeeeC------C---CCCCCCCCcccccCCCCCCCCCcccCceEE
Q 007796 193 FAIARHLRLRSDVFNHLLDDTPLPANEVSSSVL--VATYS------P---ASLQNGKGAIGAIGGGKPAMNGEVEKGLLT 261 (589)
Q Consensus 193 ~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lr--ll~YP------p---~~~~~~~~~~y~~G~g~~~~~~HTD~GlLT 261 (589)
++||++|||++++|.+++++ + .+.+| ++||| | ++.++. +. + ++++|||+|+||
T Consensus 158 ~~la~~Lgl~~~~f~~~~~~-~------~~~lr~~l~~YP~~~~~~p~~~~~~~~~-~~---~-----g~~~HtD~g~lT 221 (331)
T 1odm_A 158 KGYALALGKEENFFARHFKP-D------DTLASVVLIRYPYLDPYPEAAIKTAADG-TK---L-----SFEWHEDVSLIT 221 (331)
T ss_dssp HHHHHHTTSCTTTTGGGCCT-T------TCCCEEEEEEECCCSSCCGGGCEECTTS-CE---E-----EEEEECCSSSEE
T ss_pred HHHHHHhCCCHHHHHHHhcC-c------HHHHHHHHhhCCCcccccccccCCCccc-cc---c-----ccccccCCCeEE
Confidence 99999999999999998866 2 35899 99999 6 433221 12 3 599999999999
Q ss_pred EEecCC-CccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCc
Q 007796 262 LISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNA 340 (589)
Q Consensus 262 LL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~Da 340 (589)
||+||. +||||++++| |++|+|. ||++|||+||+|++||||+|+|+.|||+.+ +.+|||++||++|+.|+
T Consensus 222 lL~qd~v~GLQV~~~~g-Wi~V~p~--pgalvVNiGD~l~~~TnG~~kS~~HRVv~~------~~~R~Sia~F~~P~~d~ 292 (331)
T 1odm_A 222 VLYQSNVQNLQVETAAG-YQDIEAD--DTGYLINCGSYMAHLTNNYYKAPIHRVKWV------NAERQSLPFFVNLGYDS 292 (331)
T ss_dssp EEEECSSCCEEEEETTE-EEECCCC--TTSEEEEECHHHHHHTTTSSCCCCEEEECC------CSCEEEEEEEECCCTTC
T ss_pred EEeeCCCCCEEEEcCCC-eEECCCC--CCeEEEEccHHHHHHhCCEeeCCCceeCCC------CCCEEEEEEEEcCCCCC
Confidence 999995 9999998899 9999998 999999999999999999999999999852 47899999999999999
Q ss_pred EEecCcccccCCCCCCCCCCccHHHHHHHHHHhhc
Q 007796 341 ILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 341 vI~Plp~~vag~~~p~~y~pit~~df~~~r~~~~~ 375 (589)
+|.|+++++.. +. ++|++++++||+..++....
T Consensus 293 ~i~pl~~~~~~-~~-~~y~~~t~~e~l~~~~~~~~ 325 (331)
T 1odm_A 293 VIDPFDPREPN-GK-SDREPLSYGDYLQNGLVSLI 325 (331)
T ss_dssp BCCCCCTTSTT-CC-CSSCCCBHHHHHHHHHHHHH
T ss_pred EEeCCCccccc-cc-cCCCCccHHHHHHHHHHHHH
Confidence 99999998854 34 88999999999999987654
No 5
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=100.00 E-value=3.7e-53 Score=439.46 Aligned_cols=261 Identities=15% Similarity=0.113 Sum_probs=211.8
Q ss_pred CCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCc-ccCC-------CCCCc
Q 007796 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTK-SQTV-------GKGSR 156 (589)
Q Consensus 85 ~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP-~Ee~-------~~~~r 156 (589)
...||||||+.+.+++.. ++|.+||++||||||.||||+.++++++++.+++||+|| .|++ ....+
T Consensus 2 ~~~iPvIDls~l~~~~~~------~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~~~~~~ 75 (311)
T 1dcs_A 2 DTTVPTFSLAELQQGLHQ------DEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRR 75 (311)
T ss_dssp CCCCCEEEHHHHHTTCSH------HHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSSCCSSS
T ss_pred CCCCcEEEchhhcCCCHH------HHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccCCCCCC
Confidence 357999999987543321 389999999999999999999999999999999999999 8772 23468
Q ss_pred ccccccCCcC----------CC------------CCCCCh---HHHHHHHHHHHHHHHHHHHHHHHhCCC----ChhHHh
Q 007796 157 GVYMYRAGRA----------LE------------DWDSSP---PCMADIFRCMGKAARAALFAIARHLRL----RSDVFN 207 (589)
Q Consensus 157 GyY~~~~ge~----------ld------------dWP~~P---~~m~~y~~~m~kla~~LL~aIA~~LGL----~~~~F~ 207 (589)
| |.....+. .+ .|| .| +.+++|+++|.+++..||++||++||| ++++|.
T Consensus 76 G-y~~~~~e~~~~~~~~~~~~d~~E~~~~~~~~n~wP-~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~f~ 153 (311)
T 1dcs_A 76 G-FTGLESESTAQITNTGSYSDYSMCYSMGTADNLFP-SGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFL 153 (311)
T ss_dssp E-EEEC-----------------CEEEEECSSSCCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHH
T ss_pred c-eeeccccccccccCCCCCCCcceeeeccCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcHhHHh
Confidence 8 55332211 11 299 65 899999999999999999999999999 888887
Q ss_pred hhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecC-C-Cc---cceEcCCCceEEc
Q 007796 208 HLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD-S-PG---LQVCDPNGRWYLA 282 (589)
Q Consensus 208 ~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD-~-~G---LQV~~~~G~Wi~V 282 (589)
+. . +.+|++||||++.++..+ ....++++|||+|+||||+|| . +| |||++ +|+|++|
T Consensus 154 ~~--~---------~~lrl~~YPp~~~~~~~~------~~~~g~~~HtD~g~lTlL~qd~~v~G~~~LqV~~-~g~W~~V 215 (311)
T 1dcs_A 154 DC--E---------PLLRFRYFPQVPEHRSAE------EQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV-GGAFTDL 215 (311)
T ss_dssp SC--C---------CEEEEEEECC-----------------CCEEEEEECSSEEEEEEECCTTCCCCEEEEE-TTEEEEC
T ss_pred hc--c---------hhhheecCCCCCcccccC------ccccccccccCCCeEEEEecCCCCCCceeEEEEe-CCEEEeC
Confidence 65 2 489999999987542111 012469999999999999998 5 99 99998 8999999
Q ss_pred cCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCC--CC
Q 007796 283 DGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSY--VP 360 (589)
Q Consensus 283 pp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y--~p 360 (589)
+|. ||++|||+||+|++||||+|+|+.|||+.+......+.+|||++||++|+.|++|. +++++.. +.|++| ++
T Consensus 216 ~p~--pg~lvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~~R~Si~~F~~p~~d~~i~-l~~~~~~-~~p~~y~~~~ 291 (311)
T 1dcs_A 216 PYR--PDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNADFTFS-VPLAREC-GFDVSLDGET 291 (311)
T ss_dssp CCC--TTCEEEEECHHHHHHTTSCSCCCCEEECCC----CTTCCEEEEEEEECCCTTCEEE-HHHHHHT-TCCCCCCSSE
T ss_pred cCC--CCeEEEEHHHHHHHHhCCcccCCCceEeCCCcccCCCCCeEEEEEEEcCCCCcEEe-CCcccCC-CCccccCCCC
Confidence 998 99999999999999999999999999997621101257899999999999999999 9998854 578999 99
Q ss_pred ccHHHHHHHHHHhhc
Q 007796 361 ISVSQFMDDLSAEED 375 (589)
Q Consensus 361 it~~df~~~r~~~~~ 375 (589)
+|++||+..++...|
T Consensus 292 ~t~~ey~~~~~~~~~ 306 (311)
T 1dcs_A 292 ATFQDWIGGNYVNIR 306 (311)
T ss_dssp EEHHHHHCSSCCCEE
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999998887766
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=100.00 E-value=4.4e-51 Score=418.28 Aligned_cols=248 Identities=16% Similarity=0.253 Sum_probs=199.7
Q ss_pred CCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccC----CCCCCcccccc
Q 007796 86 PRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQT----VGKGSRGVYMY 161 (589)
Q Consensus 86 a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee----~~~~~rGyY~~ 161 (589)
..||||||+.. +.+++|.+||++||||||.||||+.++++++++.+++||+++... .....+| |..
T Consensus 2 ~~IPvIDls~~---------~~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~le~K~k~~~~~~~~~G-Y~~ 71 (280)
T 3on7_A 2 MKLETIDYRAA---------DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFMFNRETHDG-FFP 71 (280)
T ss_dssp --CCEEETTST---------THHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTSGGGGGGBCCTTTCCE-EEC
T ss_pred CCCCEEECCCh---------hHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhhHHHHHhccCCCCCCc-ccc
Confidence 36999999863 247899999999999999999999999999999999999983222 1234688 443
Q ss_pred cC-CcC-----CCC---------CCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCCh--hH---HhhhhcCCCCCC
Q 007796 162 RA-GRA-----LED---------WDSSP----PCMADIFRCMGKAARAALFAIARHLRLRS--DV---FNHLLDDTPLPA 217 (589)
Q Consensus 162 ~~-ge~-----ldd---------WP~~P----~~m~~y~~~m~kla~~LL~aIA~~LGL~~--~~---F~~~ld~~pl~~ 217 (589)
.. .+. ..| ||..| +.+++|+++|.+++..||++||++||++. ++ |.+++++.
T Consensus 72 ~~~~e~~~~~~~~D~kE~~~~~p~~~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~---- 147 (280)
T 3on7_A 72 ASISETAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEMIANS---- 147 (280)
T ss_dssp CC--------CCCCSCEEEEECTTSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTTCSSCHHHHHTTC----
T ss_pred CccccccCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhHHHHHHhcCC----
Confidence 22 221 112 55433 79999999999999999999999999863 32 55666542
Q ss_pred CCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCCceEEccCCCCCCcEEEEch
Q 007796 218 NEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITG 296 (589)
Q Consensus 218 ~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvG 296 (589)
..+.+|++||||++.++..+. .++++|||+|+||||+||. +||||++++|+|++|+|. ||++|||+|
T Consensus 148 --~~~~lr~~~YP~~~~~~~~~~--------~g~~~HtD~g~lTlL~qd~~~GLqV~~~~g~W~~V~p~--pg~~vVNiG 215 (280)
T 3on7_A 148 --HKTLLRILHYPPMTGDEEMGA--------IRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSD--FGNIIINIG 215 (280)
T ss_dssp --SSCEEEEEEECCCCTTCCCCS--------EEEEEECCCSSEEEEECCSCCCEEEECTTSCEEECCCC--TTCEEEEEC
T ss_pred --ccceEEEEECCCCCCccccCc--------ccccCCCCCCeEEEEEecCCCCeEEEcCCCCEEECcCC--CCEEEEEcC
Confidence 125899999999986433222 3589999999999999995 999999989999999998 999999999
Q ss_pred hhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCCCccHHHHHHHHHHhhc
Q 007796 297 KALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEED 375 (589)
Q Consensus 297 D~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~pit~~df~~~r~~~~~ 375 (589)
|+|++||||+|+|+.|||+.++..+ ...+|||++||++|+.|++|.| +||++||+..|+.+..
T Consensus 216 D~l~~~Tng~~kS~~HRVv~~~~~~-~~~~R~Si~~F~~P~~d~~i~p---------------~ita~~~l~~rl~~~~ 278 (280)
T 3on7_A 216 DMLQEASDGYFPSTSHRVINPEGTD-KTKSRISLPLFLHPHPSVVLSE---------------RYTADSYLMERLRELG 278 (280)
T ss_dssp HHHHHHTTTSSCCCCEEEECCTTCC-TTSCEEECCEEECCCTTCBCSS---------------SCBHHHHHHHHHHHTT
T ss_pred hHHHHHhCCcccCCCceEeCCCCCC-CCCCeEEEEEEEcCCCCCEECC---------------CccHHHHHHHHHHHhc
Confidence 9999999999999999998753211 2468999999999999999963 5899999999998764
No 7
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.11 E-value=4.1e-11 Score=101.53 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=63.2
Q ss_pred cccccCCCccccccccchhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHHHHhhh
Q 007796 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~ 465 (589)
+..-+..|+++.+|.|+|+++|||+|....|+ |+.+...|+.|+.+++...|.||.+||.+++.++++.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 45566899999999999999999999999998 7777899999999999999999999999999998763
No 8
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.03 E-value=9.7e-11 Score=102.38 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=63.9
Q ss_pred ccccccCCCccccccccchhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHHHHhhh
Q 007796 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~ 465 (589)
.+..-+.+|+++.+|.|+|+++|||+|....|+ |+.+...|+.|+.+++...|.||.+||.+++.++++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHHh
Confidence 455667899999999999999999999999998 6667899999999999999999999999999998763
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.00 E-value=1.4e-10 Score=100.95 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=64.1
Q ss_pred ccccccCCCccccccccchhhccC-CccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHHHHhhhh
Q 007796 396 SLRSVLSDPLSGAFLDDAMVVSCG-HSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDD 466 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~~cg-hsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~~ 466 (589)
.+..-+..|+++.+|.|+|+++|| |+|...-|+ |+.+...|+.|+.+++...|.||.+||.+++.++++..
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcc
Confidence 445667899999999999999999 999999998 67678899999999999999999999999999987743
No 10
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.84 E-value=1.7e-09 Score=104.14 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=62.5
Q ss_pred CcccccccCCCccccccccchhhccCCccChhhHH-HHhhc-CcccccCcccccCCCCchHHHHHHHHHHHhh
Q 007796 394 EPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDT-SRCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (589)
Q Consensus 394 ~~sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~-~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e 464 (589)
...+..-+..|+++.+|.|+|+++|||+|....|. |+.+. ..|+.|+.+++...|.||.+||.+++.++.+
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence 34566778999999999999999999999999999 55443 3599999999999999999999999999865
No 11
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.81 E-value=1.3e-09 Score=89.62 Aligned_cols=70 Identities=16% Similarity=0.309 Sum_probs=62.2
Q ss_pred ccccccCCCccccccccchhhccCCccChhhHH-HHhh-cCcccccCcccccCCCCchHHHHHHHHHHHhhh
Q 007796 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVID-TSRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~-~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~ 465 (589)
.+.+-+.-|+...+|.|+|+++|||+|-..-|+ |+.+ ...|++|+.++....|.||+.||.+++.++++.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHc
Confidence 455667889999999999999999999999988 5554 678999999999999999999999999998764
No 12
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.5e-09 Score=93.30 Aligned_cols=69 Identities=23% Similarity=0.426 Sum_probs=59.3
Q ss_pred ccccccCCCccccccccchhhc-cCCccChhhHHHHhhc-------Ccccc--cCcc-cccCCCCchHHHHHHHHHHHhh
Q 007796 396 SLRSVLSDPLSGAFLDDAMVVS-CGHSFGGLMLRKVIDT-------SRCTI--CSAE-IETGSLVPNLALRAAAVAIKQE 464 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~~-cghsf~~~~~~~~~~~-------~~c~~--c~~~-~~~~~l~pn~~lr~~~~~~~~e 464 (589)
++..-|..|+++.+|.|+|+++ |||+|-...|.+.++. ..|++ |... ++...|.||.+||.+++.++++
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3445568999999999999996 9999999999844443 38999 8888 9999999999999999999766
No 13
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=2.2e-08 Score=99.94 Aligned_cols=67 Identities=15% Similarity=0.265 Sum_probs=59.1
Q ss_pred ccccCCCccccccccchhhccCCccChhhHH-HHhhcC-cccccCcccccCCCCchHHHHHHHHHHHhh
Q 007796 398 RSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTS-RCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (589)
Q Consensus 398 ~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~-~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e 464 (589)
...+..|+++.+|.|+|+++|||||-..-|. |+.+.. .|++|+.+++...|.||..||.+++.|+.+
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence 3556889999999999999999999999999 444433 499999999999999999999999999876
No 14
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.35 E-value=3.4e-07 Score=77.36 Aligned_cols=73 Identities=23% Similarity=0.464 Sum_probs=61.4
Q ss_pred CcccccccCCCccccccccchhhc-cCCccChhhHH-HHhhc--CcccccCccc-ccCCCCchHHHHHHHHHHHhhhh
Q 007796 394 EPSLRSVLSDPLSGAFLDDAMVVS-CGHSFGGLMLR-KVIDT--SRCTICSAEI-ETGSLVPNLALRAAAVAIKQEDD 466 (589)
Q Consensus 394 ~~sl~~~lsdp~~g~~~~da~~~~-cghsf~~~~~~-~~~~~--~~c~~c~~~~-~~~~l~pn~~lr~~~~~~~~e~~ 466 (589)
.+.|..-|.=|+-..+|.|+++++ |||+|-..=|+ |+.+. ..|++|+.++ ....|.||..|+.+++.++++..
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 445566667799999999999999 99999988887 54433 5899999997 68899999999999999998743
No 15
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.25 E-value=2.3e-07 Score=73.99 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=49.7
Q ss_pred cCCCccccccccchhh-ccCCccChhhHH-HHhhcCcccccCcccccCCCCchHHH
Q 007796 401 LSDPLSGAFLDDAMVV-SCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLAL 454 (589)
Q Consensus 401 lsdp~~g~~~~da~~~-~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~l 454 (589)
+..|+|+.+|+|+|+. +|||+|....|+ |+.+..+|++++++++...|.||.+-
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 4789999999999999 899999999998 88888899999999999999999753
No 16
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.04 E-value=2.1e-06 Score=73.63 Aligned_cols=71 Identities=17% Similarity=0.391 Sum_probs=60.3
Q ss_pred ccccccCCCccccccccchhh-ccCCccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHHHHhhhh
Q 007796 396 SLRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDD 466 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~-~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~~ 466 (589)
.+..-+.=|+-...+.|++++ +|||+|-..=|+ |+.....|++|+.++....|.||+.|+.+++.+++.+.
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 344455668888888999888 899999988887 67777899999999999999999999999999987754
No 17
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.6e-06 Score=86.25 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=57.2
Q ss_pred cccccCCCccccccccchhh-ccCCccChhhHHHHhhc---Ccccc--cCcccccCCCCchHHHHHHHHHHHh
Q 007796 397 LRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVIDT---SRCTI--CSAEIETGSLVPNLALRAAAVAIKQ 463 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~-~cghsf~~~~~~~~~~~---~~c~~--c~~~~~~~~l~pn~~lr~~~~~~~~ 463 (589)
++.-|..|+++.+|.|+|++ .|||+|-...|.+.++. ..|++ |++.++...|.||..|+..++.+++
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 34445899999999999986 99999999999966554 47999 9999999999999999988876543
No 18
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.93 E-value=7.5e-06 Score=72.51 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=58.8
Q ss_pred cccccCCCccccccccchhh-ccCCccChhhHHHHhhcCcccccCcccccCCCCchHHHHHHHHHHHhhhh
Q 007796 397 LRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDD 466 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~-~cghsf~~~~~~~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~~ 466 (589)
|+..+.=|+-..++.|++++ +|||+|-..=|++..+ ..|++|+.++....|.||+.|+.++..+++.+.
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 34455678888888999999 9999999888885555 899999999999999999999999998877643
No 19
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.88 E-value=6.4e-06 Score=73.51 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=58.6
Q ss_pred ccccccCCCccccccccchhhccCCccChhhHH-HHhhc-CcccccCccccc-CCCCchHHHHHHHHHHHhhhh
Q 007796 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDT-SRCTICSAEIET-GSLVPNLALRAAAVAIKQEDD 466 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~-~~c~~c~~~~~~-~~l~pn~~lr~~~~~~~~e~~ 466 (589)
.+..-+.=|+-..+|.|+++++|||+|-..=|. |+... ..|++|+.++.. ..+.||..|+.+++.+.....
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~~ 121 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYG 121 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccccc
Confidence 344456678999999999999999999998887 55433 499999999996 899999999999988876543
No 20
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.80 E-value=1.5e-05 Score=69.47 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=59.1
Q ss_pred ccccccCCCccccccccchhh-ccCCccChhhHH-HHhhcCcccccCcccccC----CCCchHHHHHHHHHHHhhh
Q 007796 396 SLRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLR-KVIDTSRCTICSAEIETG----SLVPNLALRAAAVAIKQED 465 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~-~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~----~l~pn~~lr~~~~~~~~e~ 465 (589)
.|+.-+.=|+-..++.|++++ +|||+|-..=|+ |+.....|++|+.++... .|.+|..|+.++..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~ 86 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGL 86 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTH
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhH
Confidence 455556778888899999998 999999888887 767778999999999865 8899999999999887753
No 21
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.79 E-value=1.3e-05 Score=74.64 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=59.2
Q ss_pred ccccccCCCccccccccchhhccCCccChhhHHHHhhc--CcccccCcccccC-CCCchHHHHHHHHHHHhhhh
Q 007796 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT--SRCTICSAEIETG-SLVPNLALRAAAVAIKQEDD 466 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~~~~--~~c~~c~~~~~~~-~l~pn~~lr~~~~~~~~e~~ 466 (589)
.++.-+.=|+-..+|.|+++++|||+|-..=|.+.++. ..|++|+.++... .|.||+.|+.+++.+..+..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~~ 147 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYS 147 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTTT
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHhh
Confidence 34555677888999999999999999998888854443 3799999999977 99999999999999886643
No 22
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.72 E-value=1.2e-05 Score=69.89 Aligned_cols=68 Identities=16% Similarity=0.439 Sum_probs=56.8
Q ss_pred cccccCCCccccccccchhhccCCccChhhHHHHhhcC----cccccCcccccCCCCchHHHHHHHHHHHhh
Q 007796 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTS----RCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~~~~~----~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e 464 (589)
|+..+.=|+-...+.|+++++|||+|-..=|.+.++.+ .|++|+.++....|.+|+.|+..++.+++.
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 44445667777888899999999999999888555543 899999999999999999999999888764
No 23
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.68 E-value=2e-05 Score=91.91 Aligned_cols=68 Identities=15% Similarity=0.302 Sum_probs=63.0
Q ss_pred ccccCCCccccccccchhhccC-CccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHHHHhhh
Q 007796 398 RSVLSDPLSGAFLDDAMVVSCG-HSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (589)
Q Consensus 398 ~~~lsdp~~g~~~~da~~~~cg-hsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~ 465 (589)
.+-+.||+|+++|.|+||++.| +++....|+ |+....+|+..+++++...|.||++||.+++.++.+.
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence 4556899999999999999998 699999999 8888999999999999999999999999999999873
No 24
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=2.4e-05 Score=64.14 Aligned_cols=61 Identities=21% Similarity=0.487 Sum_probs=50.0
Q ss_pred ccccccCCCccccccccchhhccCCccChhhHH-HHhh------cCcccccCcccccCCCCchHHHHH
Q 007796 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVID------TSRCTICSAEIETGSLVPNLALRA 456 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~------~~~c~~c~~~~~~~~l~pn~~lr~ 456 (589)
.++..+.=|+-...+.|+++++|||+|-..=|+ |+.. ...|++|+..+....|.||+.|+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 344455667778888999999999999888887 5555 689999999999999999988764
No 25
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.51 E-value=4.2e-05 Score=67.73 Aligned_cols=69 Identities=20% Similarity=0.404 Sum_probs=57.6
Q ss_pred CcccccccCCCccccccccchhhccCCccChhhHH-HHhhcC-cccccCcccccCCCCchHHHHHHHHHHH
Q 007796 394 EPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTS-RCTICSAEIETGSLVPNLALRAAAVAIK 462 (589)
Q Consensus 394 ~~sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~-~c~~c~~~~~~~~l~pn~~lr~~~~~~~ 462 (589)
.++|..-+.=|+-..+|.|+++++|||+|-..=|. |+.+.. .|++|+.++....++||..|+.++..++
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 34566666778999999999999999999988887 555554 9999999999999999999888776544
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.50 E-value=2.6e-05 Score=63.91 Aligned_cols=60 Identities=22% Similarity=0.507 Sum_probs=49.5
Q ss_pred cccccCCCccccccccchhhccCCccChhhHH-HHhh------cCcccccCcccccCCCCchHHHHH
Q 007796 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVID------TSRCTICSAEIETGSLVPNLALRA 456 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~------~~~c~~c~~~~~~~~l~pn~~lr~ 456 (589)
++.-+.=|+-...+.|+++++|||+|-..=|+ |+.. ...|++|+.+++...|.||+.|+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 44445667778888999999999999988887 5555 678999999999999999988764
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.50 E-value=3.9e-05 Score=66.17 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=58.4
Q ss_pred cccccccCCCccccccccchh-hccCCccChhhHH-HHhhc-CcccccCcccccCCCCchHHHHHHHHHHHhhh
Q 007796 395 PSLRSVLSDPLSGAFLDDAMV-VSCGHSFGGLMLR-KVIDT-SRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (589)
Q Consensus 395 ~sl~~~lsdp~~g~~~~da~~-~~cghsf~~~~~~-~~~~~-~~c~~c~~~~~~~~l~pn~~lr~~~~~~~~e~ 465 (589)
++|+..+.=|+=..++.|+++ ++|||+|-..=|+ |+... ..|++|+.++....|.+|..|...++.+++.+
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 344555566777778888998 8999999988888 66655 59999999999999999999999988887664
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.48 E-value=1.3e-05 Score=65.28 Aligned_cols=60 Identities=20% Similarity=0.428 Sum_probs=48.7
Q ss_pred cccccCCCccccccccchhhccCCccChhhHH-HHhh-------cCcccccCcccccCCCCchHHHHH
Q 007796 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVID-------TSRCTICSAEIETGSLVPNLALRA 456 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~-------~~~c~~c~~~~~~~~l~pn~~lr~ 456 (589)
|+.-+.=|+-...+.|+++++|||+|=..=|+ |+.. ...|++|+.++....|.||+.|+.
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 34444557778888999999999999988887 4443 578999999999999999988764
No 29
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.41 E-value=5.6e-05 Score=70.61 Aligned_cols=74 Identities=24% Similarity=0.364 Sum_probs=57.3
Q ss_pred CcccccccCCCccccccccchhh-ccCCccChhhHH-HHhh-cCcccccCcccc-cCCCCchHHHHHHHHHHHhhhhh
Q 007796 394 EPSLRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLR-KVID-TSRCTICSAEIE-TGSLVPNLALRAAAVAIKQEDDR 467 (589)
Q Consensus 394 ~~sl~~~lsdp~~g~~~~da~~~-~cghsf~~~~~~-~~~~-~~~c~~c~~~~~-~~~l~pn~~lr~~~~~~~~e~~~ 467 (589)
..++..-+.=|+-...+.|++++ +|||+|-..=|. |+.. ...|++|+.++. ...|.||..|+.++..++...+.
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~~~ 125 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDE 125 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-----
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcchhH
Confidence 34556666778888999999988 999999988888 5554 678999999995 67899999999999998775433
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=7.3e-05 Score=61.57 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=45.4
Q ss_pred ccccCCCccccccccchhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchHHH
Q 007796 398 RSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLAL 454 (589)
Q Consensus 398 ~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~l 454 (589)
..-+.=|+-...+.|+++++|||+|=..=|. |+.....|++|+.++. ..+.||..|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHH
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHH
Confidence 3344567778888999999999999877776 7777899999999997 778888554
No 31
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00013 Score=58.88 Aligned_cols=60 Identities=17% Similarity=0.322 Sum_probs=49.4
Q ss_pred CcccccccCCCccccccccchhh-ccCCccChhhHH-HHhhcCcccccCcccccCCCCchHH
Q 007796 394 EPSLRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLA 453 (589)
Q Consensus 394 ~~sl~~~lsdp~~g~~~~da~~~-~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~ 453 (589)
.+.|+.-+.=|+=...+.|++++ +|||+|-..=|+ |+.....|++|+.++....+.+|++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 70 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGPS 70 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCCS
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccCC
Confidence 34455666778888889999988 999999888777 7777889999999999988888753
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.19 E-value=8.4e-05 Score=67.63 Aligned_cols=59 Identities=20% Similarity=0.441 Sum_probs=46.4
Q ss_pred cCCCccccccccchhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchHHHHHHHHHH
Q 007796 401 LSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNLALRAAAVAI 461 (589)
Q Consensus 401 lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~ 461 (589)
+.=|+-..+|.|+++++|||+|-..=|. |+.....|++|+.+|.... +|+.+...++.+
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~~i~~~ 113 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT--YSLVLDNCINKM 113 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE--ECHHHHHHHHHH
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC--CccchhHHHHHH
Confidence 4568888899999999999999988887 7888899999999997543 355555554443
No 33
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.15 E-value=0.0002 Score=62.82 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=53.1
Q ss_pred ccCCCccccccccchhhccCCccChhhHH-HHhh-cCcccccCccccc-------CCCCchHHHHHHHHHHHhhh
Q 007796 400 VLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVID-TSRCTICSAEIET-------GSLVPNLALRAAAVAIKQED 465 (589)
Q Consensus 400 ~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~-~~~c~~c~~~~~~-------~~l~pn~~lr~~~~~~~~e~ 465 (589)
-+.=|+=..++.|+++++|||+|-..=|+ |+.+ ...|++|+.++.. ..+.+|..|+..++.+..++
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~ 89 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRE 89 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHH
Confidence 34557777888999999999999988887 4444 5789999999874 67778999999888777654
No 34
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.04 E-value=0.00042 Score=56.18 Aligned_cols=58 Identities=19% Similarity=0.461 Sum_probs=46.4
Q ss_pred cccccccCCCccccccccchhhc-cCCccChhhHH-HHhhc--CcccccCcc-cccCCCCchH
Q 007796 395 PSLRSVLSDPLSGAFLDDAMVVS-CGHSFGGLMLR-KVIDT--SRCTICSAE-IETGSLVPNL 452 (589)
Q Consensus 395 ~sl~~~lsdp~~g~~~~da~~~~-cghsf~~~~~~-~~~~~--~~c~~c~~~-~~~~~l~pn~ 452 (589)
+.++.-+.=|+-..+|.|+++++ |||+|=..=|+ |+.+. ..|++|+.+ +..+.|.+|+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 72 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGPS 72 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCTT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccCC
Confidence 44555667788889999999999 99999998888 44433 589999999 4578888885
No 35
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.97 E-value=0.00028 Score=66.02 Aligned_cols=67 Identities=22% Similarity=0.409 Sum_probs=56.5
Q ss_pred CcccccccCCCccccccccchhhccCCccChhhHHHHhh-c-CcccccCcccccCCCCchHHHHHHHHH
Q 007796 394 EPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID-T-SRCTICSAEIETGSLVPNLALRAAAVA 460 (589)
Q Consensus 394 ~~sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~~~-~-~~c~~c~~~~~~~~l~pn~~lr~~~~~ 460 (589)
.+.|.+.|.=|+-..+|.|+++.+|||+|=..=|.+.++ . ..|++|+.++..+.++||.+++..+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 456777788899999999999999999999888885443 3 399999999999999999998876654
No 36
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.92 E-value=0.00029 Score=55.99 Aligned_cols=39 Identities=26% Similarity=0.582 Sum_probs=35.1
Q ss_pred hhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchH
Q 007796 414 MVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNL 452 (589)
Q Consensus 414 ~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~ 452 (589)
++++|||+|-..=|+ |+.+...|++|+.++....+.|+|
T Consensus 31 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 31 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred EeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 778999999998887 888889999999999999998875
No 37
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.86 E-value=0.00059 Score=59.87 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=47.2
Q ss_pred CcccccccCCCccccccccchhhccCCccChhhHH-HHhh-cCcccccCcccccCCCCch
Q 007796 394 EPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLR-KVID-TSRCTICSAEIETGSLVPN 451 (589)
Q Consensus 394 ~~sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~-~~~~-~~~c~~c~~~~~~~~l~pn 451 (589)
...++.-+.=|+-..++.|+++++|||+|-..=|. |+.. ...|++|+.++....+.++
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred HHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 34455666778889999999999999999999888 4444 5789999999998887655
No 38
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.00067 Score=53.54 Aligned_cols=53 Identities=17% Similarity=0.365 Sum_probs=42.5
Q ss_pred cccccCCCccccccccchhhccCCccChhhHHHHh--hcCcccccCcccccCCCC
Q 007796 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI--DTSRCTICSAEIETGSLV 449 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~~--~~~~c~~c~~~~~~~~l~ 449 (589)
+.+-+.=|+-...+.|+++++|||+|=..=|++.+ ....|++|+.++..+.|+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~if 66 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVF 66 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTCC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhcC
Confidence 34444567778889999999999999998888444 457899999999987764
No 39
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.74 E-value=0.00036 Score=54.13 Aligned_cols=39 Identities=26% Similarity=0.582 Sum_probs=34.3
Q ss_pred hhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchH
Q 007796 414 MVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNL 452 (589)
Q Consensus 414 ~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~ 452 (589)
++++|||.|-..=|+ |+.+...|++|+.++....+.|+|
T Consensus 24 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 24 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp EEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred EeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 677999999988887 777889999999999998887764
No 40
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.00093 Score=55.16 Aligned_cols=60 Identities=28% Similarity=0.546 Sum_probs=44.2
Q ss_pred cccccccCCCcccccccc----chhhccCCccChhhHHHHhhc----CcccccCccccc---CCCCchHHH
Q 007796 395 PSLRSVLSDPLSGAFLDD----AMVVSCGHSFGGLMLRKVIDT----SRCTICSAEIET---GSLVPNLAL 454 (589)
Q Consensus 395 ~sl~~~lsdp~~g~~~~d----a~~~~cghsf~~~~~~~~~~~----~~c~~c~~~~~~---~~l~pn~~l 454 (589)
+.++..+.=|+-...+.| +++++|||+|-..=|++.++. ..|++|+.++.. ..|.+|+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~~ 80 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLTV 80 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTTT
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHHH
Confidence 344445556777777888 899999999998888844443 699999999874 456666654
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.30 E-value=0.0013 Score=51.72 Aligned_cols=39 Identities=21% Similarity=0.514 Sum_probs=32.1
Q ss_pred hhhccCCccChhhHHHH-hh-cCcccccCcccccCCCCchH
Q 007796 414 MVVSCGHSFGGLMLRKV-ID-TSRCTICSAEIETGSLVPNL 452 (589)
Q Consensus 414 ~~~~cghsf~~~~~~~~-~~-~~~c~~c~~~~~~~~l~pn~ 452 (589)
++++|||+|-..=|++. .+ ...|++|+.+++...+.|++
T Consensus 22 ~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 22 MVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp EECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred ecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence 56799999998888855 33 36799999999999998875
No 42
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.0022 Score=51.21 Aligned_cols=53 Identities=17% Similarity=0.480 Sum_probs=41.9
Q ss_pred ccccccCCCccccccccchhhccCCccChhhHHHHh----hcCcccccCcccccCCC
Q 007796 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI----DTSRCTICSAEIETGSL 448 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~~----~~~~c~~c~~~~~~~~l 448 (589)
.+..-+.=|+-...+.|+++++|||+|=..=|++.+ ....|++|+.++....+
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 344445668888888999999999999998888555 35689999999987654
No 43
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.09 E-value=0.0031 Score=51.10 Aligned_cols=39 Identities=15% Similarity=0.385 Sum_probs=33.1
Q ss_pred chhhccCCccChhhHH-HHhhcCcccccCcccccCCCCch
Q 007796 413 AMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPN 451 (589)
Q Consensus 413 a~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn 451 (589)
.++++|||.|-..=|+ |+.....|++|+.++....+.||
T Consensus 31 ~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 31 VRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp EEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred EEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 3566999999888777 88888999999999998888776
No 44
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.73 E-value=0.0032 Score=57.73 Aligned_cols=65 Identities=20% Similarity=0.357 Sum_probs=49.7
Q ss_pred cccccccCCCccccccccchhhccCCccChhhHHHHhh-c-CcccccCcccc---------cCCCCchHHHHHHHH
Q 007796 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID-T-SRCTICSAEIE---------TGSLVPNLALRAAAV 459 (589)
Q Consensus 395 ~sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~~~-~-~~c~~c~~~~~---------~~~l~pn~~lr~~~~ 459 (589)
+.|.+-+.=|+-..+|.|+|..+|||+|=..=|++.++ . ..|++|+.++. ...++|+.+++..+.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 34555567788889999999999999999888884443 4 38999999753 446778888776654
No 45
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.60 E-value=0.0057 Score=47.91 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=34.0
Q ss_pred CCccccccccc-------hhhccCCccChhhHH-HHhhcCcccccCccccc
Q 007796 403 DPLSGAFLDDA-------MVVSCGHSFGGLMLR-KVIDTSRCTICSAEIET 445 (589)
Q Consensus 403 dp~~g~~~~da-------~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~ 445 (589)
=|+=...+.+. ++++|||.|-..=|+ |+.....|++|+.++..
T Consensus 18 C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35555556665 788999999988887 77788899999998763
No 46
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.44 E-value=0.0018 Score=51.89 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=36.0
Q ss_pred CccccccccchhhccCCccChhhHH-HHhhcCcccccCcccccC
Q 007796 404 PLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETG 446 (589)
Q Consensus 404 p~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~ 446 (589)
|+=...+.|+++++|||.|=..=|+ |+.+...|++|+.++...
T Consensus 19 ~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 19 AICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred ccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 5556777889999999999988877 677778999999998744
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.20 E-value=0.0046 Score=54.41 Aligned_cols=49 Identities=22% Similarity=0.490 Sum_probs=38.9
Q ss_pred Cccccccccc-------hhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchH
Q 007796 404 PLSGAFLDDA-------MVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNL 452 (589)
Q Consensus 404 p~~g~~~~da-------~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~ 452 (589)
|+=...++|+ ++++|||+|-..=|+ |+.+...|++|++.++...+.+++
T Consensus 11 ~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~ 67 (133)
T 4ap4_A 11 PICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 67 (133)
T ss_dssp TTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECB
T ss_pred cccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccc
Confidence 3334445555 888999999998887 778888999999999988887763
No 48
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=95.08 E-value=0.0083 Score=47.36 Aligned_cols=35 Identities=29% Similarity=0.652 Sum_probs=30.1
Q ss_pred ccchhhccCCccChhhHH-HHhhcCcccccCccccc
Q 007796 411 DDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIET 445 (589)
Q Consensus 411 ~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~ 445 (589)
+++++++|||.|-..=|+ |+.....|++|+.+|..
T Consensus 28 ~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 28 EDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp SCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 456788999999888777 88888999999999875
No 49
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.05 E-value=0.0095 Score=46.81 Aligned_cols=35 Identities=20% Similarity=0.552 Sum_probs=29.3
Q ss_pred ccc-chhhccCCccChhhHH-HHhhcCcccccCcccc
Q 007796 410 LDD-AMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIE 444 (589)
Q Consensus 410 ~~d-a~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~ 444 (589)
+.+ .++++|||+|-..=|+ |+.+...|++|+.++.
T Consensus 15 ~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 15 PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred ccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 445 4788999999988877 7778899999999986
No 50
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.05 E-value=0.0044 Score=49.12 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=35.2
Q ss_pred CCCccccccccchhhccCCccChhhHH-HHhhcCcccccCcccccCC
Q 007796 402 SDPLSGAFLDDAMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGS 447 (589)
Q Consensus 402 sdp~~g~~~~da~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~ 447 (589)
.=|+=-..+.+ ++++|||.|-..=|+ |+.+...|++|+.++....
T Consensus 17 ~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 17 ECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 33555556667 889999999988877 6777899999999988544
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.93 E-value=0.0054 Score=53.92 Aligned_cols=39 Identities=26% Similarity=0.582 Sum_probs=35.5
Q ss_pred hhhccCCccChhhHH-HHhhcCcccccCcccccCCCCchH
Q 007796 414 MVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETGSLVPNL 452 (589)
Q Consensus 414 ~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~~l~pn~ 452 (589)
++.+|||.|-..=|. |+...+.|++|+.++..+.+.|+|
T Consensus 93 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 93 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp EEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred EeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 778999999998887 899999999999999999998875
No 52
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.91 E-value=0.012 Score=47.30 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=29.1
Q ss_pred chhhccCCccChhhHH-HHhhcCcccccCcccccC
Q 007796 413 AMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIETG 446 (589)
Q Consensus 413 a~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~~ 446 (589)
.++++|||.|-..=|+ |+.+...|++|++++...
T Consensus 39 ~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 39 LRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp EEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred EEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3778999999888777 888889999999998754
No 53
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=94.75 E-value=0.013 Score=43.99 Aligned_cols=32 Identities=28% Similarity=0.581 Sum_probs=27.6
Q ss_pred chhhccCCccChhhHH-HHhhcCcccccCcccc
Q 007796 413 AMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIE 444 (589)
Q Consensus 413 a~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~ 444 (589)
.++++|||.|-..=|+ |+.+...|++|+.++.
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp EEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred eEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 6778999999888777 7778899999999875
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.70 E-value=0.011 Score=45.45 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=33.3
Q ss_pred CCccccccccchhhccCCccChhhHHHHhhcCcccccCcccccCC
Q 007796 403 DPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGS 447 (589)
Q Consensus 403 dp~~g~~~~da~~~~cghsf~~~~~~~~~~~~~c~~c~~~~~~~~ 447 (589)
=|+=...+.|+++++|||+|=..=|++ ....|++|++++....
T Consensus 9 C~IC~~~~~~p~~l~CgH~fC~~Ci~~--~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 9 CQQCQAEAKCPKLLPCLHTLCSGCLEA--SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CSSSCSSCBCCSCSTTSCCSBTTTCSS--SSSSCSSCCSSSSCCS
T ss_pred ceEeCCccCCeEEcCCCCcccHHHHcc--CCCCCCcCCcEeecCC
Confidence 355556677899999999998776665 4678999999987543
No 55
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.64 E-value=0.017 Score=44.80 Aligned_cols=44 Identities=20% Similarity=0.531 Sum_probs=33.5
Q ss_pred ccccccCCCccccccccchhhccCCccChhhHHHHhh----cCccccc
Q 007796 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID----TSRCTIC 439 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~~~----~~~c~~c 439 (589)
.++.-+.=|+=...+.|+++++|||+|=..=|++.++ ...|++|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3444445577788889999999999999988884443 4579887
No 56
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.60 E-value=0.017 Score=43.66 Aligned_cols=43 Identities=21% Similarity=0.527 Sum_probs=32.6
Q ss_pred cccccCCCccccccccchhhccCCccChhhHHHH----hhcCccccc
Q 007796 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKV----IDTSRCTIC 439 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~~cghsf~~~~~~~~----~~~~~c~~c 439 (589)
++.-+.=|+=...+.|+++++|||+|-..=|++. .....|++|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3444455777788899999999999998888844 345788887
No 57
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=94.00 E-value=0.017 Score=48.51 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=28.9
Q ss_pred chhhccCCccChhhHH-HHhhcCcccccCccccc
Q 007796 413 AMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIET 445 (589)
Q Consensus 413 a~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~ 445 (589)
.++++|||.|-..=|. |+.....|++|+.++..
T Consensus 56 ~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 56 ATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred EEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 7778999999988887 88889999999998764
No 58
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=93.92 E-value=0.021 Score=42.85 Aligned_cols=32 Identities=25% Similarity=0.553 Sum_probs=27.4
Q ss_pred chhhc-cCCccChhhHH-HHhhcCcccccCcccc
Q 007796 413 AMVVS-CGHSFGGLMLR-KVIDTSRCTICSAEIE 444 (589)
Q Consensus 413 a~~~~-cghsf~~~~~~-~~~~~~~c~~c~~~~~ 444 (589)
.++++ |||.|-..=|+ |+.+...|++|+.++.
T Consensus 21 ~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 21 ARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred eEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 56676 99999988887 8888899999999874
No 59
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.78 E-value=0.024 Score=45.32 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=27.6
Q ss_pred chhhccCCccChhhHH-HHhhcCcccccCccccc
Q 007796 413 AMVVSCGHSFGGLMLR-KVIDTSRCTICSAEIET 445 (589)
Q Consensus 413 a~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~~ 445 (589)
.++++|||.|-..=|+ |+.....|++|+.++..
T Consensus 31 ~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 31 LGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp EEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred EEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4456999999888777 88888999999999764
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.31 E-value=0.064 Score=43.33 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=30.0
Q ss_pred CccccccccchhhccCCc-cChhhHHHHhhcCcccccCccccc
Q 007796 404 PLSGAFLDDAMVVSCGHS-FGGLMLRKVIDTSRCTICSAEIET 445 (589)
Q Consensus 404 p~~g~~~~da~~~~cghs-f~~~~~~~~~~~~~c~~c~~~~~~ 445 (589)
|+=-..+.|+++++|||. |=..=++ +...|++|+.+|+.
T Consensus 29 ~IC~~~~~~~~~~pCgH~~~C~~C~~---~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 29 KICMDRNIAIVFVPCGHLVTCKQCAE---AVDKCPMCYTVITF 68 (75)
T ss_dssp SSSCSSCCCBCCSSSCCCCBCHHHHH---HCSBCTTTCCBCCC
T ss_pred CcCCCCCCCEEEecCCCHHHHHHHhh---CCCCCccCCceecC
Confidence 444455678889999999 8776664 45899999999874
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=92.24 E-value=0.042 Score=44.44 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=29.9
Q ss_pred CccccccccchhhccCCc-cChhhHHHHhhcCcccccCcccc
Q 007796 404 PLSGAFLDDAMVVSCGHS-FGGLMLRKVIDTSRCTICSAEIE 444 (589)
Q Consensus 404 p~~g~~~~da~~~~cghs-f~~~~~~~~~~~~~c~~c~~~~~ 444 (589)
++=-..+.|+++++|||. |=..=+++. ..|++|+.+|+
T Consensus 28 ~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~ 66 (74)
T 4ic3_A 28 KICMDRNIAIVFVPCGHLVTCKQCAEAV---DKCPMCYTVIT 66 (74)
T ss_dssp TTTSSSBCCEEEETTCCBCCCHHHHTTC---SBCTTTCCBCS
T ss_pred CCCCCCCCCEEEcCCCChhHHHHhhhcC---ccCCCcCcCcc
Confidence 444455678889999999 887766544 89999999987
No 62
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.91 E-value=0.034 Score=45.82 Aligned_cols=34 Identities=26% Similarity=0.568 Sum_probs=28.2
Q ss_pred chhhc-cCCccChhhHH-HHhhcCcccccCcccccC
Q 007796 413 AMVVS-CGHSFGGLMLR-KVIDTSRCTICSAEIETG 446 (589)
Q Consensus 413 a~~~~-cghsf~~~~~~-~~~~~~~c~~c~~~~~~~ 446 (589)
.++++ |||.|-..=|+ |+.+...|++|+.++...
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred EEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 44554 99999998887 888889999999997643
No 63
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=91.70 E-value=0.16 Score=41.79 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=30.6
Q ss_pred ccchhhc--cCCccChhhHHHHh--hcCcccccCcccccCCC
Q 007796 411 DDAMVVS--CGHSFGGLMLRKVI--DTSRCTICSAEIETGSL 448 (589)
Q Consensus 411 ~da~~~~--cghsf~~~~~~~~~--~~~~c~~c~~~~~~~~l 448 (589)
+|..+++ |||+|=..=|.++. ....|++|+++++...+
T Consensus 24 ~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 24 DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 5677776 99999988888765 35799999999987665
No 64
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=91.37 E-value=3.1 Score=41.26 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=100.2
Q ss_pred HHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCCCCCCcccccccCCcCC-----CC---CCCC--h
Q 007796 105 LKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRAGRAL-----ED---WDSS--P 174 (589)
Q Consensus 105 ~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~~~~~rGyY~~~~ge~l-----dd---WP~~--P 174 (589)
....+.|..+|.+.|++++.+- +++++++.+.+.++.+-.... ...+ ......... .+ |-.. +
T Consensus 13 ~~~~~~i~~~L~~~g~~Vid~f-Ls~ee~~~L~~~~~~~~~~g~-----~~~a-~i~~~~~~~~~~iR~d~i~wl~~~~~ 85 (247)
T 2hbt_A 13 KLALEYIVPCMNKHGICVVDDF-LGKETGQQIGDEVRALHDTGK-----FTDG-QLVSQKSDSSKDIRGDKITWIEGKEP 85 (247)
T ss_dssp HHHHHTHHHHHHHTSEEEESSS-SCHHHHHHHHHHHHHHHHTTC-----SCSC-CEEECCSSSTTCEECCEEEEECSCST
T ss_pred hhhHHHHHHHhccCCEEEECCC-CCHHHHHHHHHHHHhhhhcCC-----cccc-ccccccccccccccccceeeeccccc
Confidence 3446788999999999999988 999999999999888532110 0111 111100000 01 4221 2
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCC
Q 007796 175 --PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMN 252 (589)
Q Consensus 175 --~~m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~ 252 (589)
+.+..|++.+.++-. .+...||+.. +.. ...+.+.+|++. +. ...
T Consensus 86 ~~~~~~~l~~~i~~l~~----~ln~~lGl~~------i~~--------~~e~~~~~Y~~~----G~-----------~y~ 132 (247)
T 2hbt_A 86 GCETIGLLMSSMDDLIR----HCNGKLGSYK------ING--------RTKAMVACYPGN----GT-----------GYV 132 (247)
T ss_dssp TCHHHHHHHHHHHHHHH----HTTTTSTTCC------EEE--------ECCEEEEEECSS----SC-----------CEE
T ss_pred chhHHHHHHHHHHHHHH----HHhhhcCccc------ccc--------cceEEEEEecCC----CC-----------ccc
Confidence 334445555544332 2222233210 000 124678899861 11 245
Q ss_pred CcccCc-----eEEEEec--C-------CCccceEcCCC-ceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccC
Q 007796 253 GEVEKG-----LLTLISS--D-------SPGLQVCDPNG-RWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPD 317 (589)
Q Consensus 253 ~HTD~G-----lLTLL~q--D-------~~GLQV~~~~G-~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p 317 (589)
.|.|.. .+|+++. + ++-|.+.+.++ ....|.|. .|.+|++-.+. -.+|.|.+
T Consensus 133 ~H~D~~~~~~R~~T~vlYLN~~w~~~~~GG~l~~~~~~~~~~~~v~P~--~grlv~F~s~~----------~~~H~V~p- 199 (247)
T 2hbt_A 133 RHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPK--FDRLLFFWSDR----------RNPHEVQP- 199 (247)
T ss_dssp EECSSCSCCSEEEEEEEECBTTCCHHHHBCCEEECCTTCSSCEEECCB--TTEEEEEECST----------TCCEEECC-
T ss_pred ccccCCCCCCceEEEEEEeCCCCCCCCCceeEEEecCCCCceEEEEcC--CCEEEEEecCC----------Cceeeecc-
Confidence 677762 5777764 2 24477876443 57889988 99999987532 15899974
Q ss_pred CCCCCCCCCceEEEEeee
Q 007796 318 FVSCSNGGGRTSLAFRLM 335 (589)
Q Consensus 318 ~~~~~~~~~R~SiafF~~ 335 (589)
....||||+..++
T Consensus 200 -----~~~~R~sit~W~~ 212 (247)
T 2hbt_A 200 -----AYATRYAITVWYF 212 (247)
T ss_dssp -----BSSCEEEEEEEEE
T ss_pred -----CCCEEEEEEEEEc
Confidence 2468999988664
No 65
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=89.96 E-value=2.3 Score=41.31 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=32.8
Q ss_pred ceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCC
Q 007796 278 RWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQG 338 (589)
Q Consensus 278 ~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~ 338 (589)
.|+.|.|. +|.+||+-+. | .|.|.+. ....+|+||+|-+.+..
T Consensus 167 ~~~~i~P~--~G~lvlFpS~-l-----------~H~V~p~----~~~~~RiSIsFN~~~~~ 209 (216)
T 2rg4_A 167 TFRSVAPK--VGDVLLWESW-L-----------RHEVPMN----MAEEDRISVSFNYAWGE 209 (216)
T ss_dssp SEEEECCC--TTEEEEEETT-S-----------CEEECCC----CSSSCEEEEEEEEEC--
T ss_pred CeeEecCC--CCeEEEECCC-C-----------EEeccCC----CCCCCEEEEEEEeecCC
Confidence 56678887 9999999877 4 7999853 23468999999998865
No 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=89.79 E-value=0.095 Score=41.17 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=24.5
Q ss_pred ccchhh--ccCCc-cChhhHHHHh-hcCcccccCcccc
Q 007796 411 DDAMVV--SCGHS-FGGLMLRKVI-DTSRCTICSAEIE 444 (589)
Q Consensus 411 ~da~~~--~cghs-f~~~~~~~~~-~~~~c~~c~~~~~ 444 (589)
.|++++ ||||. |=..=+.+++ +.+.|++|+++|+
T Consensus 18 ~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 18 RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456666 99998 6555555444 4469999999986
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=89.79 E-value=0.056 Score=44.52 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=31.6
Q ss_pred CccccccccchhhccCCc-cChhhHHHHhhcCcccccCcccccC---CCCchHHH
Q 007796 404 PLSGAFLDDAMVVSCGHS-FGGLMLRKVIDTSRCTICSAEIETG---SLVPNLAL 454 (589)
Q Consensus 404 p~~g~~~~da~~~~cghs-f~~~~~~~~~~~~~c~~c~~~~~~~---~l~pn~~l 454 (589)
++=.....|++++||||. |=..=+++ ...|++|+.+|... .+.+|.+|
T Consensus 22 ~IC~~~~~~~v~~pCgH~~~C~~C~~~---~~~CP~Cr~~i~~~~~i~~p~~~~~ 73 (79)
T 2yho_A 22 MVCCEEEINSTFCPCGHTVCCESCAAQ---LQSCPVCRSRVEHVQHVYLPTHTSL 73 (79)
T ss_dssp TTTSSSBCCEEEETTCBCCBCHHHHTT---CSBCTTTCCBCCEEEECBCTTCCC-
T ss_pred EEeCcccCcEEEECCCCHHHHHHHHHh---cCcCCCCCchhhCeEEEEeCcchhh
Confidence 333445678899999999 65554443 35999999998732 34455544
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.06 E-value=0.17 Score=40.40 Aligned_cols=35 Identities=11% Similarity=0.330 Sum_probs=26.6
Q ss_pred cccccchhhccCCc-cChhhHHHHhhcCcccccCccccc
Q 007796 408 AFLDDAMVVSCGHS-FGGLMLRKVIDTSRCTICSAEIET 445 (589)
Q Consensus 408 ~~~~da~~~~cghs-f~~~~~~~~~~~~~c~~c~~~~~~ 445 (589)
.-..|++++||||. |=..=++ +...|++|+++|..
T Consensus 23 ~~~~~~v~~pCgH~~~C~~C~~---~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 23 NGTVNWVLLPCRHTCLCDGCVK---YFQQCPMCRQFVQE 58 (68)
T ss_dssp SSCCCCEETTTTBCCSCTTHHH---HCSSCTTTCCCCCC
T ss_pred cCCCCEEEECCCChhhhHHHHh---cCCCCCCCCcchhc
Confidence 33467888999999 6655544 46899999999873
No 69
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=88.73 E-value=0.14 Score=44.76 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=27.0
Q ss_pred hhhccCCccChhhHH-HHhhcCcccccCcccc
Q 007796 414 MVVSCGHSFGGLMLR-KVIDTSRCTICSAEIE 444 (589)
Q Consensus 414 ~~~~cghsf~~~~~~-~~~~~~~c~~c~~~~~ 444 (589)
++++|||.|-..=|. |+.....|++|+++..
T Consensus 69 ~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp EEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred eecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 445899999999988 8888999999999854
No 70
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=88.73 E-value=0.16 Score=54.02 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=32.9
Q ss_pred CccccccccchhhccCCccChhhHH-HHh-hcCcccccCcccccC
Q 007796 404 PLSGAFLDDAMVVSCGHSFGGLMLR-KVI-DTSRCTICSAEIETG 446 (589)
Q Consensus 404 p~~g~~~~da~~~~cghsf~~~~~~-~~~-~~~~c~~c~~~~~~~ 446 (589)
|+=-..+.|+++.+|||.|=..=|. |+. +...|++|+.++...
T Consensus 336 ~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 336 KICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp TTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3334456788999999999766666 555 579999999998743
No 71
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=88.19 E-value=0.21 Score=43.10 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=24.7
Q ss_pred hhccCCccChhhHH-HH-----hhcCcccccCcccc
Q 007796 415 VVSCGHSFGGLMLR-KV-----IDTSRCTICSAEIE 444 (589)
Q Consensus 415 ~~~cghsf~~~~~~-~~-----~~~~~c~~c~~~~~ 444 (589)
+++|||.|-..=|. |+ .....|++|+..+.
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 67999999998887 66 34569999999876
No 72
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=88.13 E-value=0.15 Score=40.19 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=24.9
Q ss_pred cccchhh--ccCCc-cChhhHH-HHhhcCcccccCcccc
Q 007796 410 LDDAMVV--SCGHS-FGGLMLR-KVIDTSRCTICSAEIE 444 (589)
Q Consensus 410 ~~da~~~--~cghs-f~~~~~~-~~~~~~~c~~c~~~~~ 444 (589)
..|++++ ||||. |=..=++ +..+...|++|+++|+
T Consensus 18 ~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 18 PKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3566766 99999 5433334 4555678999999986
No 73
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=82.73 E-value=0.25 Score=44.08 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred hccCCccChhhHH-HHhhcCcccccCcccc
Q 007796 416 VSCGHSFGGLMLR-KVIDTSRCTICSAEIE 444 (589)
Q Consensus 416 ~~cghsf~~~~~~-~~~~~~~c~~c~~~~~ 444 (589)
.+|||.|-..=|. |+.....|++|+++..
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ------------------------------
T ss_pred CCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4899999999888 8888999999999854
No 74
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=81.36 E-value=6.5 Score=38.19 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=52.1
Q ss_pred eEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccC-------ceEEEEecCCCccceEcC--CCceEEccCCCCCCcEEE
Q 007796 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEK-------GLLTLISSDSPGLQVCDP--NGRWYLADGGSAPGDLLL 293 (589)
Q Consensus 223 ~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~-------GlLTLL~qD~~GLQV~~~--~G~Wi~Vpp~~~pg~lVV 293 (589)
.+.+++|.+-. +++.|.|. .+++|-+....=+.+... .+.++.+.-. +|+++|
T Consensus 106 ~~LvN~Y~~G~----------------~i~~H~D~~e~~~~~pI~svSLG~~~~f~f~~~~~~~~~~~i~L~--~Gsllv 167 (211)
T 3i3q_A 106 ACLINRYAPGA----------------KLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLE--HGDVVV 167 (211)
T ss_dssp EEEEEEECTTC----------------CEEEECCCCCSCTTSCEEEEEEESCEEEEECCSSTTSCCEEEEEC--TTCEEE
T ss_pred EEEEEEEcCCC----------------CcccccCCCccccCCCEEEEECCCCeEEEEecccCCCceEEEECC--CCCEEE
Confidence 68899998732 26677772 244555544344444432 3456777655 999999
Q ss_pred EchhhhHHHhCCCCCCccceeccCCCCC--CCCCCceEEEEeee
Q 007796 294 ITGKALSHATAGLRPAALYRAAPDFVSC--SNGGGRTSLAFRLM 335 (589)
Q Consensus 294 NvGD~Le~lTnG~lkStlHRVv~p~~~~--~~~~~R~SiafF~~ 335 (589)
+-|++-. | .|.|..-.... ..+..|+|+.|...
T Consensus 168 M~G~~r~-~--------~H~I~~~~~~~~p~~~~~RIsLTFR~~ 202 (211)
T 3i3q_A 168 WGGESRL-F--------YHGIQPLKAGFHPLTIDCRYNLTFRQA 202 (211)
T ss_dssp ECGGGTT-C--------CEEECCCCCCCBTTTBTCEEEEEEECC
T ss_pred ECchHHc-e--------EeccCcccCCcCCCCCCCEEEEEeeec
Confidence 9998842 4 57775421000 01246999999853
No 75
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=81.28 E-value=2.6 Score=41.96 Aligned_cols=106 Identities=20% Similarity=0.160 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCc---------
Q 007796 188 ARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKG--------- 258 (589)
Q Consensus 188 a~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~G--------- 258 (589)
+..|.+.|...|+....++...+.. ....+++++|.+-. ...+|.|..
T Consensus 72 ~~~l~~~i~~~l~~~~~f~~~~L~~-------~~e~~~~~rY~~G~----------------~y~~H~D~~~~~~~~~~~ 128 (243)
T 3dkq_A 72 AVALGQQIMDRLLAHPQFVSAALPL-------QFYPPLFNRYQGGE----------------TFGYHIDNAIRSTPDGMI 128 (243)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCEE-------EEEEEEEEEECTTC----------------EEEEECBCSEEEETTEEE
T ss_pred HHHHHHHHHHHHccCcchhhccccc-------ccccceEEEECCCC----------------eeccCCCCCCCCCCCccc
Confidence 3444555555666654443322211 01258889998832 134566542
Q ss_pred --eEEEEe--cC-----CCccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceE
Q 007796 259 --LLTLIS--SD-----SPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTS 329 (589)
Q Consensus 259 --lLTLL~--qD-----~~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~S 329 (589)
.+|++. .| +|.|.+.+..+ =..|+|. .|.+|++-. .++|+|.+- ....||+
T Consensus 129 ~r~~T~~lYLndp~~~~GGetvf~~~~~-~~~V~P~--~G~~v~F~s------------~~lH~v~pV-----~~G~R~~ 188 (243)
T 3dkq_A 129 RTDLSATLFLSEPENYQGGELVIQDTYG-QQSIKLS--AGSLVLYPS------------SSLHQVTPV-----LSGERTA 188 (243)
T ss_dssp ECCEEEEEECSCGGGEEECCEEEEETTE-EEEECCC--TTCEEEEET------------TSEEEECCE-----EEECEEE
T ss_pred cceEEEEEEeCCCCCCCCceEEEeeCCC-cEEEecC--CCEEEEECC------------CCeEcCccc-----cccCEEE
Confidence 344443 34 25577766443 3567777 899998753 369999741 2368999
Q ss_pred EEEeeec
Q 007796 330 LAFRLMP 336 (589)
Q Consensus 330 iafF~~P 336 (589)
++++++-
T Consensus 189 ~~~Wi~s 195 (243)
T 3dkq_A 189 AFMWLQS 195 (243)
T ss_dssp EEEEEEE
T ss_pred EEEehhh
Confidence 9988863
No 76
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=79.33 E-value=0.59 Score=48.93 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=32.4
Q ss_pred CCCccccccccchhhccCCc-cChhhHHHHhhcCcccccCcccc
Q 007796 402 SDPLSGAFLDDAMVVSCGHS-FGGLMLRKVIDTSRCTICSAEIE 444 (589)
Q Consensus 402 sdp~~g~~~~da~~~~cghs-f~~~~~~~~~~~~~c~~c~~~~~ 444 (589)
.=|+=...+.|++++||||. |=..=+.+. ..|++|+.+|+
T Consensus 297 ~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---~~CP~CR~~i~ 337 (345)
T 3t6p_A 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSL---RKCPICRGIIK 337 (345)
T ss_dssp BCTTTSSSBCCEEEETTCCEEECTTTGGGC---SBCTTTCCBCC
T ss_pred CCCccCCcCCceEEcCCCChhHhHHHHhcC---CcCCCCCCCcc
Confidence 33666777889999999999 877766644 89999999987
No 77
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.87 E-value=1.1 Score=36.94 Aligned_cols=35 Identities=17% Similarity=0.448 Sum_probs=28.7
Q ss_pred ccchhhccC-----CccChhhHH-HHhhcC--cccccCccccc
Q 007796 411 DDAMVVSCG-----HSFGGLMLR-KVIDTS--RCTICSAEIET 445 (589)
Q Consensus 411 ~da~~~~cg-----hsf~~~~~~-~~~~~~--~c~~c~~~~~~ 445 (589)
++.+|+||. |.|-..=|+ |+.+.. .|++|+.++..
T Consensus 28 ~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 28 ESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 567889996 999988887 777653 89999999773
No 78
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=74.22 E-value=12 Score=35.97 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=52.1
Q ss_pred eEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccC--------ceEEEEecCCCccceEcC---------CCceEEccCC
Q 007796 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEK--------GLLTLISSDSPGLQVCDP---------NGRWYLADGG 285 (589)
Q Consensus 223 ~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~--------GlLTLL~qD~~GLQV~~~---------~G~Wi~Vpp~ 285 (589)
.+.+++|.+-.. +++.|.|- .+.+|-+....=+.+... .+..+.+.-.
T Consensus 101 ~~LvN~Y~~G~d---------------~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~~~~~~~~~~~~~~~~~~L~ 165 (204)
T 3s57_A 101 FVLINRYKDGSD---------------HICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVVRLPLA 165 (204)
T ss_dssp EEEEEEESSTTC---------------CEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEGGGCSSSCSCCCCCEEEEEC
T ss_pred eeEEEEECCCCC---------------cccceecChhhccCCCcEEEEECCCceEEEEEEcCCCccccccCCceEEEECC
Confidence 578999988431 25667665 233444433223333321 1245666555
Q ss_pred CCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEee
Q 007796 286 SAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRL 334 (589)
Q Consensus 286 ~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~ 334 (589)
+|+++|+-|++=..| .|.|..- ......|+|+.|..
T Consensus 166 --~GsllvM~g~~q~~w--------~H~Ip~~---~~~~~~RislTFR~ 201 (204)
T 3s57_A 166 --HGSLLMMNHPTNTHW--------YHSLPVR---KKVLAPRVNLTFRK 201 (204)
T ss_dssp --TTEEEEEETTHHHHE--------EEEECCC---TTCCSCEEEEEEEC
T ss_pred --CCCEEEECchhhhee--------Eeecccc---CCCCCCEEEEEeee
Confidence 999999999998888 6777531 11236899999974
No 79
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=70.06 E-value=13 Score=36.60 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=53.8
Q ss_pred eEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccC--------ceEEEEecCCCccceEcCC----------CceEEccC
Q 007796 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEK--------GLLTLISSDSPGLQVCDPN----------GRWYLADG 284 (589)
Q Consensus 223 ~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~--------GlLTLL~qD~~GLQV~~~~----------G~Wi~Vpp 284 (589)
.+.+++|.+-. .+++.|.|- .+.||-+....=+.+.... +..+.+.-
T Consensus 127 ~~LvN~Y~~G~---------------d~i~~H~D~~~~~~~~~~IaslSLG~~~~f~f~~~~~~~~~~~~~~~~~~~i~L 191 (238)
T 2iuw_A 127 SLLCNLYRNEK---------------DSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPL 191 (238)
T ss_dssp EEEEEEECSTT---------------CCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC--------CCCEEEEEE
T ss_pred EEEEEEECCCC---------------CceeCCcCChhhcCCCCcEEEEECCCCEEEEEeccCCccccCcccCCceEEEEc
Confidence 67889998742 136677773 2344444332223333221 35777765
Q ss_pred CCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeec
Q 007796 285 GSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMP 336 (589)
Q Consensus 285 ~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P 336 (589)
. +|+++|+-|++=..| .|.|..- ......|+||.|....
T Consensus 192 ~--~gsllvM~G~~r~~w--------~H~I~~~---~~~~~~RIsLTfR~v~ 230 (238)
T 2iuw_A 192 D--HGTLLIMEGATQADW--------QHRVPKE---YHSREPRVNLTFRTVY 230 (238)
T ss_dssp C--TTCEEEEEETHHHHE--------EEEECCC---SSCCCCEEEEEEECCC
T ss_pred C--CCCEEEEChhhhCcc--------EecCCCc---CCCCCCEEEEEeeecc
Confidence 5 999999999998888 5555321 1124689999998754
No 80
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=62.12 E-value=14 Score=38.42 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=65.4
Q ss_pred eEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCc------eEEEEecCCCccceEcCCCceEEccCCCCCCcEEEEch
Q 007796 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKG------LLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITG 296 (589)
Q Consensus 223 ~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~G------lLTLL~qD~~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvG 296 (589)
.+.++.|.+-. +++.|.|.. +.||-+....=+.+...+|.++.+.-. +|+++|+-|
T Consensus 199 ~~lvN~Y~~G~----------------~I~~H~D~~~~~~~~I~slSLG~~~~f~f~~~~~~~~~l~L~--~gsLlvM~G 260 (345)
T 3tht_A 199 QMTINQYEPGQ----------------GIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPDGIAVPVMLP--RRSLLVMTG 260 (345)
T ss_dssp EEEEEEECTTC----------------CEEEECCCTTTBCSCEEEEEESSCEEEEEECTTSCEEEEEEC--TTEEEEECT
T ss_pred EEEEEEecCCC----------------CEeeccCCchhcCCeEEEEECCCceeEEEccCCCceEEEEcC--CCcEEEECh
Confidence 68889998721 267777763 555555554556666666778888765 999999999
Q ss_pred hhhHHHhCCCCCCccceeccCC--------C-CC----CCCCCceEEEEeeecCC
Q 007796 297 KALSHATAGLRPAALYRAAPDF--------V-SC----SNGGGRTSLAFRLMPQG 338 (589)
Q Consensus 297 D~Le~lTnG~lkStlHRVv~p~--------~-~~----~~~~~R~SiafF~~P~~ 338 (589)
++-..|..|.-+-...-+.... . .+ .....|+|+.|...+..
T Consensus 261 ~~r~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~r~~RiSlT~R~v~~~ 315 (345)
T 3tht_A 261 ESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQT 315 (345)
T ss_dssp HHHHTSEEEECCCSEEEEESGGGSSCEECCSSSSCEEEEECCCEEEEEEECBCSS
T ss_pred HHhhceEccCCcccCCccCcccccccccccccCCCceeccCCCEEEEEEEecCCC
Confidence 9999997776654443332100 0 00 01356999999988775
No 81
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.50 E-value=5.3 Score=32.61 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=23.6
Q ss_pred ccCCccChhhHH-HHhhc--CcccccCcccc
Q 007796 417 SCGHSFGGLMLR-KVIDT--SRCTICSAEIE 444 (589)
Q Consensus 417 ~cghsf~~~~~~-~~~~~--~~c~~c~~~~~ 444 (589)
.|||.|-..=|. |++.. ..|++|+.+..
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 899999999888 65555 68999999865
No 82
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=48.40 E-value=7.7 Score=40.96 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=48.1
Q ss_pred cccccCCCccccccccchhh-ccCCc--cChhhHH---HHhhcCcccccCcccccCCCCchHHHHHHHHHH
Q 007796 397 LRSVLSDPLSGAFLDDAMVV-SCGHS--FGGLMLR---KVIDTSRCTICSAEIETGSLVPNLALRAAAVAI 461 (589)
Q Consensus 397 l~~~lsdp~~g~~~~da~~~-~cghs--f~~~~~~---~~~~~~~c~~c~~~~~~~~l~pn~~lr~~~~~~ 461 (589)
++==|.+|||+..|..++=. .|-|. |+...+- .-...-.|++|++.+....|...-.|..+.+..
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 33446899999888888777 59998 8865543 223458999999999999998887776554433
No 83
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.56 E-value=3.4 Score=34.30 Aligned_cols=26 Identities=23% Similarity=0.580 Sum_probs=19.3
Q ss_pred ccCCccChhhHHHHhhc---------Ccccc--cCcc
Q 007796 417 SCGHSFGGLMLRKVIDT---------SRCTI--CSAE 442 (589)
Q Consensus 417 ~cghsf~~~~~~~~~~~---------~~c~~--c~~~ 442 (589)
+|||+|=..=|++-++. -.|+. |+..
T Consensus 25 ~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 25 QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 79999988776643332 37998 9987
No 84
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=41.04 E-value=10 Score=33.02 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=24.1
Q ss_pred hhhccCCccChhhHH-H-HhhcCcccccCcccc
Q 007796 414 MVVSCGHSFGGLMLR-K-VIDTSRCTICSAEIE 444 (589)
Q Consensus 414 ~~~~cghsf~~~~~~-~-~~~~~~c~~c~~~~~ 444 (589)
-|+||.|.|=-.=+. + .++.+.|+.|+.+|.
T Consensus 16 RmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 16 RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp EEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred eeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 467999999766554 3 356799999999976
No 85
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=38.96 E-value=9.7 Score=40.13 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=24.5
Q ss_pred hccCCccChhhHH-HHhhc-----------CcccccCccccc
Q 007796 416 VSCGHSFGGLMLR-KVIDT-----------SRCTICSAEIET 445 (589)
Q Consensus 416 ~~cghsf~~~~~~-~~~~~-----------~~c~~c~~~~~~ 445 (589)
.+|||.|-..-|. |+... ..|+.|+++|+.
T Consensus 332 ~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 332 AKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp TTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3799999999887 66653 579999999873
No 86
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=37.60 E-value=94 Score=29.97 Aligned_cols=156 Identities=9% Similarity=-0.044 Sum_probs=81.9
Q ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCCCCCCcccccccCCcCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007796 119 NAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRAGRALED-WDSSPPCMADIFRCMGKAARAALFAIAR 197 (589)
Q Consensus 119 GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~~~~~rGyY~~~~ge~ldd-WP~~P~~m~~y~~~m~kla~~LL~aIA~ 197 (589)
..+++.+- ++++.++.+.+.++.-|... ... .+ ......++-.. |-.. ..+...|.+.|+.
T Consensus 40 ~i~~~~~f-Ls~~Ec~~Li~~a~~~l~~s-~v~----~~-~~~~~~RtS~~~wl~~-----------~~~v~~i~~Ri~~ 101 (216)
T 3itq_A 40 LIVVLGNV-LSDEECDELIELSKSKLARS-KVG----SS-RDVNDIRTSSGAFLDD-----------NELTAKIEKRISS 101 (216)
T ss_dssp TEEEEESC-SCHHHHHHHHHHHHHHHC--------------CCCCGGGTTCEECCC-----------CHHHHHHHHHHHH
T ss_pred CEEEECCc-CCHHHHHHHHHHhhcccccc-eec----cC-CccCCcEeeeeEEeCC-----------cHHHHHHHHHHHH
Confidence 56677766 99999999999988755421 110 00 00000011111 4322 1233345555566
Q ss_pred hCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCc-----------eEEEEec-
Q 007796 198 HLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKG-----------LLTLISS- 265 (589)
Q Consensus 198 ~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~G-----------lLTLL~q- 265 (589)
.+|++.+. . -.+++++|.+... ..+|.|.. ++|+|+.
T Consensus 102 ~~gl~~~~-----~----------E~lqv~~Y~~G~~----------------y~~H~D~~~~~~~~~~~~R~~T~l~YL 150 (216)
T 3itq_A 102 IMNVPASH-----G----------EGLHILNYEVDQQ----------------YKAHYDYFAEHSRSAANNRISTLVMYL 150 (216)
T ss_dssp HHTSCGGG-----B----------CCCEEEEECBTCC----------------EEEECSSCCTTSGGGGGCEEEEEEEEC
T ss_pred hcCceecc-----c----------cceeEEEeCCCCc----------------cccccCCCcCCCcccCCceEEEEEEec
Confidence 67776321 1 1478889976321 34565542 3676654
Q ss_pred -CC--CccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCC-CCCccceeccCCCCCCCCCCceEEEEeeec
Q 007796 266 -DS--PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGL-RPAALYRAAPDFVSCSNGGGRTSLAFRLMP 336 (589)
Q Consensus 266 -D~--~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~-lkStlHRVv~p~~~~~~~~~R~SiafF~~P 336 (589)
|. +|=-+.. +. =+.|.|. .|.+|+.-.-. .+|. -..++|.+.+- ....||++..+++-
T Consensus 151 nd~~~GGeT~Fp-~~-~~~V~P~--~G~al~f~~~~----~~g~~d~~~lH~~~PV-----~~G~K~v~~~W~~~ 212 (216)
T 3itq_A 151 NDVEEGGETFFP-KL-NLSVHPR--KGMAVYFEYFY----QDQSLNELTLHGGAPV-----TKGEKWIATQWVRR 212 (216)
T ss_dssp SCCSEECCEEET-TT-TEEECCC--TTCEEEEECCC----SSHHHHHTTCEEECCE-----EESCEEEEEEEEES
T ss_pred ccCCcCceeEec-CC-CCEEecC--CCeEEEEeccC----CCCCCCCcccccccee-----ccccEEEEEeeEec
Confidence 53 4433332 21 2677777 88888765311 1111 13579999741 23579999887764
No 87
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=37.42 E-value=5.7 Score=32.35 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.7
Q ss_pred eeeccEeEEecCCCCCccccccee
Q 007796 514 FSVNEKVLIKGNRRTPEKFVGKEA 537 (589)
Q Consensus 514 f~~~~~~~~~~~~~~~~~~~~~~~ 537 (589)
|.|||||.+.|++|--=||||.-.
T Consensus 3 ~~vG~rv~v~g~~~G~VryvG~~~ 26 (72)
T 3rdv_A 3 FRVGERVWVNGNKPGFIQFLGETQ 26 (72)
T ss_dssp CCTTCEEEETTTEEEEEEEEECCS
T ss_pred cccCCEEEECCCCEEEEEEeeeCC
Confidence 679999999999999999999865
No 88
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=34.58 E-value=10 Score=33.19 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=22.9
Q ss_pred cccchhhccCCccChhhHHHHhhcCcccccCcc
Q 007796 410 LDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAE 442 (589)
Q Consensus 410 ~~da~~~~cghsf~~~~~~~~~~~~~c~~c~~~ 442 (589)
|.++.-..||+.| .+++.+-++|+.|+-+
T Consensus 65 v~p~~C~~CG~~F----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVF----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBC----CCCSSCCSSCSSSCCC
T ss_pred EECcChhhCcCee----cccCCCCCCCcCCCCC
Confidence 5566666899999 3566778999999977
No 89
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=34.27 E-value=17 Score=38.33 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=44.8
Q ss_pred ccccccCCCccccccccchhh-ccCCc--cChhhHHHH---hhcCcccccCcccccCCCCchHHHHHH
Q 007796 396 SLRSVLSDPLSGAFLDDAMVV-SCGHS--FGGLMLRKV---IDTSRCTICSAEIETGSLVPNLALRAA 457 (589)
Q Consensus 396 sl~~~lsdp~~g~~~~da~~~-~cghs--f~~~~~~~~---~~~~~c~~c~~~~~~~~l~pn~~lr~~ 457 (589)
+++==|.+|+|+..|.-++=. .|-|. |+....-.. ...-.|++|++.+....|.-.-.+-.+
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~I 278 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEI 278 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHH
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHH
Confidence 444456899999888777766 59998 886654432 335899999999998888666554433
No 90
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=30.18 E-value=1e+02 Score=29.28 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=31.5
Q ss_pred eEEccCCCCCCcEEEEchhhhHHHhCCCC-CCccceeccCCCCCCCCCCceEEEEeeecC
Q 007796 279 WYLADGGSAPGDLLLITGKALSHATAGLR-PAALYRAAPDFVSCSNGGGRTSLAFRLMPQ 337 (589)
Q Consensus 279 Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~l-kStlHRVv~p~~~~~~~~~R~SiafF~~P~ 337 (589)
-+.|.|. .|.+|++--- ..+|.. ..++|.|.+- ....||++..+++-.
T Consensus 170 ~~~V~P~--~G~al~f~~~----~~~g~~d~~~lH~~~PV-----~~G~K~~~~~Wi~~~ 218 (224)
T 2jig_A 170 GLAVKPI--KGDALMFYSL----KPDGSNDPASLHGSCPT-----LKGDKWSATKWIHVA 218 (224)
T ss_dssp SEEECCC--TTCEEEEESB----CTTSCBCGGGCEEECCE-----EESEEEEEEEEEESS
T ss_pred ceEEecc--cCcEEEEEee----CCCCCCCCCCcccCCcc-----ccceEEEEEEeEEcC
Confidence 3788887 8888877531 123332 4689999741 235799999888654
No 91
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=28.33 E-value=54 Score=28.14 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=27.1
Q ss_pred ceeeccEeEEecC----CCCC-cccccceeeeeeeccCce
Q 007796 513 PFSVNEKVLIKGN----RRTP-EKFVGKEAVITSQCLNGW 547 (589)
Q Consensus 513 pf~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~ 547 (589)
-|.+||.|-|||| |-.| .+|=||--+|-..=-..|
T Consensus 33 ~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~Av 72 (96)
T 1vq8_Q 33 EFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAY 72 (96)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEE
T ss_pred HcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEE
Confidence 3889999999998 6677 788898887766554443
No 92
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=27.45 E-value=18 Score=39.18 Aligned_cols=57 Identities=11% Similarity=-0.089 Sum_probs=45.1
Q ss_pred CCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCc
Q 007796 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTK 147 (589)
Q Consensus 84 ~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP 147 (589)
...-||.||++.+.++. +.+...+.+++.|+++|.+. |+.+......+.+.+|.+.-
T Consensus 97 G~~~iP~i~f~di~~~~------~s~~~~~~ir~rG~vVIRgv-vp~e~A~~~~~~~~~yl~~n 153 (461)
T 2dbn_A 97 GDAVWPVLSYADIKAGH------VTAEQREQIKRRGCAVIKGH-FPREQALGWDQSMLDYLDRN 153 (461)
T ss_dssp TCCSSCEEEHHHHHHTC------CCHHHHHHHHHHSEEEEETS-SCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcceecHHHhcCCC------CCHHHHHHHHhccEEEECCC-CCHHHHHHHHHHHHHHHHhC
Confidence 45689999999875432 12445678889999999999 99999988888888887654
No 93
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=26.27 E-value=65 Score=30.01 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=27.9
Q ss_pred ceeeccEeEEecCC----CCC-cccccceeeee--eec---------cCceEEEEee
Q 007796 513 PFSVNEKVLIKGNR----RTP-EKFVGKEAVIT--SQC---------LNGWYLLNII 553 (589)
Q Consensus 513 pf~~~~~~~~~~~~----~~~-~~~~~~~~~~~--~~~---------~~~~~~~~~~ 553 (589)
-|.+||.|-||||- -.| -+|=||--+|. +|+ ..|=||.|.|
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI 89 (157)
T 4a17_P 33 TYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNGRYIEKRL 89 (157)
T ss_dssp CCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEETTEEEEEEE
T ss_pred HhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeECCEeeeeEE
Confidence 48899999999984 445 46778776665 444 3455656655
No 94
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=26.00 E-value=62 Score=26.37 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCCCccccceeeccEeEEecCCCC-CcccccceeeeeeeccCce
Q 007796 504 DGLNRGVQYPFSVNEKVLIKGNRRT-PEKFVGKEAVITSQCLNGW 547 (589)
Q Consensus 504 ~~~~~gv~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 547 (589)
+.+||=- -|-+|+.|+|--|-|. =.-||||+-+|-.- +|-|
T Consensus 4 dpmPKyW--sYp~gl~VeIN~NAkygcPhhVGrkGkIie~-~hSa 45 (84)
T 2heq_A 4 DPLPKYW--SYPVGLAVEINNNARYGCPHHVGRKGKIIEH-LHSA 45 (84)
T ss_dssp CCCCSSC--CSCTTCEEEECTTCTTTSTTCCSSEEEEEEE-CCCS
T ss_pred CCCcccc--ccCCCCEEEEcCCcccCCccccccccchhhh-hhhh
Confidence 4566665 4558999999999775 46899999988653 5666
No 95
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=25.92 E-value=15 Score=27.65 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=21.8
Q ss_pred hhccCCccChhhHHHHhhcCcccccCcccc
Q 007796 415 VVSCGHSFGGLMLRKVIDTSRCTICSAEIE 444 (589)
Q Consensus 415 ~~~cghsf~~~~~~~~~~~~~c~~c~~~~~ 444 (589)
-+.||+.|+..-|+ ++-.-+|+.|+--|-
T Consensus 6 C~rCg~~fs~~el~-~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 6 CGKCWKTFTDEQLK-VLPGVRCPYCGYKII 34 (48)
T ss_dssp CCCTTTTCCCCCSC-CCSSSCCTTTCCSCE
T ss_pred eeccCCCccHHHHh-hCCCcccCccCcEEE
Confidence 35799999988744 445678999987653
No 96
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=25.49 E-value=57 Score=26.18 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=40.3
Q ss_pred ceeeccEeEEecCCCCCcccccceeeeeeeccCceEEEEeeCCCceehhhhhhHHhhhCCccc
Q 007796 513 PFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRSLRKILNSQTI 575 (589)
Q Consensus 513 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (589)
-|.|||+|+.+= +--+|- +|.||+-=-+|=|.|+--| |..-.|+-..|+.+..++.|
T Consensus 6 ~~~vGd~vmArW---~D~~yY--pA~I~si~~~~~Y~V~F~d-G~~etvk~~~ikp~~~~~~~ 62 (67)
T 3p8d_A 6 EFQINEQVLACW---SDCRFY--PAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAFSKDQNI 62 (67)
T ss_dssp CCCTTCEEEEEC---TTSCEE--EEEEEEECTTSEEEEEETT-SCEEEEEGGGEEECC-----
T ss_pred ccccCCEEEEEc---CCCCEe--eEEEEEECCCCeEEEEEeC-CceEEEeHHHcccCCccccc
Confidence 489999999983 333332 6888887777889999998 77777777778777776654
No 97
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=22.81 E-value=62 Score=27.86 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=40.2
Q ss_pred ceeeccEe----EEecCCCCCcccccceeeeeeeccCceEEEEeeCCCceehhhh
Q 007796 513 PFSVNEKV----LIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQY 563 (589)
Q Consensus 513 pf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (589)
.|.+||-| .|+|||..-+.|.|=---+...-+|-++.||-+-+|+-|--.|
T Consensus 3 ~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~f 57 (98)
T 2ftc_K 3 EFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICF 57 (98)
T ss_pred ccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEE
Confidence 47788865 5779999999999965555666789999999999998775443
No 98
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=22.69 E-value=46 Score=25.59 Aligned_cols=33 Identities=12% Similarity=0.344 Sum_probs=21.7
Q ss_pred cchhhcc--CCccChh----hHHHHhh--cCcccccCcccc
Q 007796 412 DAMVVSC--GHSFGGL----MLRKVID--TSRCTICSAEIE 444 (589)
Q Consensus 412 da~~~~c--ghsf~~~----~~~~~~~--~~~c~~c~~~~~ 444 (589)
+.+|.|| .||.+-. ..+|+.. ...|++|+.++.
T Consensus 18 ~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 18 NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4467884 4544433 2358765 578999998865
No 99
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=20.70 E-value=64 Score=24.36 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=37.1
Q ss_pred cceeeccEeEEecCCCCCcccccceeeeeeeccC-c-eE-EEEeeCCCceehhhhhhHHh
Q 007796 512 YPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLN-G-WY-LLNIIGSGENVRLQYRSLRK 568 (589)
Q Consensus 512 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~ 568 (589)
.+|.+||+|.|.. --|-|.+++|+.--.. + .+ +|.++...-.|.|-|..+.|
T Consensus 3 ~~~~~Gd~V~V~~-----Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek 57 (58)
T 1nz9_A 3 VAFREGDQVRVVS-----GPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57 (58)
T ss_dssp CSCCTTCEEEECS-----GGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred cccCCCCEEEEee-----cCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEE
Confidence 4789999998864 3599999999987654 3 22 35666655567777766655
Done!