Your job contains 1 sequence.
>007797
MQQIFVSSAMNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKP
SLNHNEPRQVQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPS
GPMEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQ
NKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSN
QVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGD
NSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEK
MRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGM
GMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQ
YARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAATDNSPLSGKMVGE
RRRLIKWLWSPIFIMGRSQEGESCSSWRIFGPFLSCIAYDINALSIAWL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007797
(589 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2053733 - symbol:PIF4 "AT2G43010" species:3702... 511 1.4e-64 2
TAIR|locus:2077680 - symbol:PIL6 "AT3G59060" species:3702... 500 6.1e-64 2
TAIR|locus:2061634 - symbol:PIL5 "phytochrome interacting... 377 3.4e-48 2
UNIPROTKB|Q8GRJ1 - symbol:OJ1343_B12.103 "Transcription f... 386 8.1e-43 2
TAIR|locus:2012345 - symbol:PIF3 "AT1G09530" species:3702... 444 6.6e-42 1
TAIR|locus:4010713915 - symbol:AT4G28811 species:3702 "Ar... 296 4.0e-28 2
UNIPROTKB|Q5NAE0 - symbol:P0498A12.33 "Putative BP-5 prot... 318 1.0e-27 2
UNIPROTKB|Q7FA23 - symbol:OSJNBa0058K23.6 "Os04g0618600 p... 309 6.1e-27 1
TAIR|locus:2117773 - symbol:AT4G28790 species:3702 "Arabi... 269 1.4e-26 2
TAIR|locus:4010713916 - symbol:AT4G28815 species:3702 "Ar... 233 2.5e-26 3
TAIR|locus:2115080 - symbol:SPT "AT4G36930" species:3702 ... 283 4.2e-24 1
UNIPROTKB|Q5VRS4 - symbol:OSJNBa0015I14.14 "Basic helix-l... 281 7.0e-24 1
TAIR|locus:2117788 - symbol:AT4G28800 species:3702 "Arabi... 242 1.9e-22 2
UNIPROTKB|Q948F6 - symbol:OSJNBa0049O12.18 "Putative SPAT... 262 8.2e-22 1
TAIR|locus:2155503 - symbol:ALC "AT5G67110" species:3702 ... 238 5.8e-21 2
TAIR|locus:2041369 - symbol:PIL1 "phytochrome interacting... 252 3.6e-20 2
TAIR|locus:2126876 - symbol:UNE10 "AT4G00050" species:370... 233 2.9e-17 2
TAIR|locus:2047555 - symbol:LRL1 "AT2G24260" species:3702... 206 3.2e-15 2
TAIR|locus:2163163 - symbol:PIF7 "AT5G61270" species:3702... 216 4.0e-15 2
UNIPROTKB|Q94LR3 - symbol:OSJNBa0010C11.7 "Helix-loop-hel... 191 4.0e-14 1
TAIR|locus:2126624 - symbol:LRL2 "AT4G30980" species:3702... 203 6.8e-14 1
TAIR|locus:2132303 - symbol:UNE12 "AT4G02590" species:370... 201 1.2e-13 1
TAIR|locus:2147760 - symbol:LRL3 "AT5G58010" species:3702... 196 3.6e-13 1
UNIPROTKB|Q7Y1H4 - symbol:OSJNBa0094F01.11 "Putative unch... 194 5.8e-13 1
UNIPROTKB|Q2QMM0 - symbol:LOC_Os12g40710 "Helix-loop-heli... 188 9.2e-13 1
UNIPROTKB|Q6Z7E7 - symbol:P0020C11.18 "Putative bHLH tran... 198 1.8e-12 1
TAIR|locus:2007534 - symbol:AT1G03040 "AT1G03040" species... 190 2.2e-12 1
UNIPROTKB|Q69Y51 - symbol:P0698A06.26-2 "Putative bHLH tr... 192 4.3e-12 1
UNIPROTKB|Q6Z2G7 - symbol:P0680A05.9 "Putative bHLH trans... 190 5.2e-12 1
UNIPROTKB|Q6EPZ6 - symbol:P0014G10.34 "BHLH transcription... 187 2.8e-11 2
TAIR|locus:2098008 - symbol:PIL2 "phytochrome interacting... 184 3.3e-11 2
UNIPROTKB|Q2R0R9 - symbol:LOC_Os11g41640 "Helix-loop-heli... 173 3.8e-11 1
UNIPROTKB|Q69WS3 - symbol:OJ1118_E12.15 "Putative bHLH pr... 175 6.3e-11 1
UNIPROTKB|Q2QMV9 - symbol:LOC_Os12g39850 "Helix-loop-heli... 176 6.4e-11 2
UNIPROTKB|Q75M33 - symbol:P0668H12.5 "BHLH transcription ... 179 7.5e-11 1
TAIR|locus:2202867 - symbol:BPEp "AT1G59640" species:3702... 179 7.8e-11 1
TAIR|locus:2204898 - symbol:HFR1 "AT1G02340" species:3702... 176 8.7e-11 1
UNIPROTKB|Q6K8Y4 - symbol:OJ1695_H09.18 "Basic helix-loop... 169 1.0e-10 4
TAIR|locus:2201906 - symbol:AT1G10120 "AT1G10120" species... 178 1.2e-10 1
UNIPROTKB|Q2QMN2 - symbol:LOC_Os12g40590 "Helix-loop-heli... 172 1.4e-10 1
UNIPROTKB|Q84T08 - symbol:OSJNBa0087C10.10 "BHLH transcri... 171 1.9e-10 1
UNIPROTKB|Q6AUE8 - symbol:OSJNBb0029I19.4 "Os03g0639300 p... 174 1.9e-10 1
UNIPROTKB|Q8GZV6 - symbol:OJ1017C11.10 "Putative uncharac... 182 2.0e-10 1
TAIR|locus:2118934 - symbol:RSL2 "AT4G33880" species:3702... 175 2.4e-10 1
TAIR|locus:2079676 - symbol:AT3G07340 "AT3G07340" species... 178 2.5e-10 2
TAIR|locus:504954900 - symbol:AT5G43175 "AT5G43175" speci... 161 2.7e-10 1
TAIR|locus:2205420 - symbol:AT1G68920 species:3702 "Arabi... 176 4.1e-10 1
UNIPROTKB|Q5VR96 - symbol:P0038C05.31-1 "Os06g0275600 pro... 175 4.2e-10 1
UNIPROTKB|Q2QQ32 - symbol:LOC_Os12g32400 "Helix-loop-heli... 152 6.3e-10 1
UNIPROTKB|Q2QML8 - symbol:LOC_Os12g40730 "Helix-loop-heli... 175 8.3e-10 2
UNIPROTKB|Q6ZCV8 - symbol:P0028A08.20 "Os08g0487700 prote... 170 9.7e-10 1
TAIR|locus:2095198 - symbol:AT3G23690 "AT3G23690" species... 170 1.0e-09 1
TAIR|locus:2152551 - symbol:AT5G48560 "AT5G48560" species... 172 1.2e-09 1
TAIR|locus:505006688 - symbol:AT5G50915 "AT5G50915" speci... 166 1.2e-09 1
TAIR|locus:2115200 - symbol:BEE2 "AT4G36540" species:3702... 167 1.2e-09 1
UNIPROTKB|Q84LH4 - symbol:OSJNBb0011H13.2 "Putative Helix... 167 1.5e-09 1
UNIPROTKB|Q6AV35 - symbol:OSJNBa0063J18.7 "Putative trans... 166 1.6e-09 1
TAIR|locus:2172209 - symbol:AT5G62610 "AT5G62610" species... 163 2.5e-09 1
TAIR|locus:2028804 - symbol:CIB5 "AT1G26260" species:3702... 167 2.5e-09 1
TAIR|locus:2139484 - symbol:CIB1 "AT4G34530" species:3702... 165 2.8e-09 1
TAIR|locus:2199307 - symbol:AT1G68240 species:3702 "Arabi... 144 4.6e-09 1
TAIR|locus:2199221 - symbol:RSL4 "AT1G27740" species:3702... 159 4.7e-09 1
UNIPROTKB|Q69JJ6 - symbol:OSJNBa0026C08.22 "TA1 protein-l... 164 6.6e-09 1
UNIPROTKB|Q84QW1 - symbol:OJ1191_A10.109 "BHLH transcript... 165 1.1e-08 2
TAIR|locus:2027809 - symbol:BEE3 "AT1G73830" species:3702... 155 1.5e-08 1
TAIR|locus:2053766 - symbol:AT2G42300 "AT2G42300" species... 156 2.7e-08 1
TAIR|locus:2014144 - symbol:BEE1 "BR enhanced expression ... 152 3.3e-08 1
UNIPROTKB|Q6ZFY4 - symbol:OJ1311_H06.19 "BHLH protein-lik... 153 4.4e-08 1
TAIR|locus:2032990 - symbol:CES "AT1G25330" species:3702 ... 144 7.5e-08 2
UNIPROTKB|Q8S490 - symbol:rau1 "Transcription factor RAU1... 131 1.1e-07 1
TAIR|locus:2012393 - symbol:AT1G68810 "AT1G68810" species... 147 1.2e-07 2
UNIPROTKB|Q5N802 - symbol:P0004D12.24 "BHLH transcription... 160 1.3e-07 2
UNIPROTKB|Q8W5G3 - symbol:OSJNBa0002J24.23 "Helix-loop-he... 146 3.1e-07 1
TAIR|locus:2062235 - symbol:NAI1 "AT2G22770" species:3702... 144 5.7e-07 1
UNIPROTKB|Q651K2 - symbol:B1089G05.30 "BHLH protein-like"... 143 5.9e-07 1
UNIPROTKB|Q336P5 - symbol:Os10g0575000 "Os10g0575000 prot... 149 6.6e-07 1
TAIR|locus:2008693 - symbol:FBH1 "AT1G35460" species:3702... 140 8.5e-07 1
UNIPROTKB|Q6ZA99 - symbol:P0431A03.9 "Os08g0432800 protei... 143 8.8e-07 1
TAIR|locus:2144791 - symbol:HEC3 "AT5G09750" species:3702... 136 1.3e-06 1
UNIPROTKB|Q84LF9 - symbol:RERJ1 "Transcription Factor" sp... 140 1.5e-06 1
UNIPROTKB|Q7XT55 - symbol:OSJNBa0084K20.3 "OSJNBa0076N16.... 134 2.0e-06 1
UNIPROTKB|Q657A4 - symbol:P0022F12.30 "Regulatory protein... 140 2.2e-06 1
TAIR|locus:2126856 - symbol:IND "AT4G00120" species:3702 ... 131 2.3e-06 1
UNIPROTKB|Q6Z339 - symbol:B1121A12.20 "Os02g0726700 prote... 139 2.4e-06 1
TAIR|locus:2062230 - symbol:AT2G22760 "AT2G22760" species... 137 2.8e-06 1
TAIR|locus:2141573 - symbol:FBH2 "AT4G09180" species:3702... 137 3.1e-06 2
TAIR|locus:2035237 - symbol:AT1G01260 "AT1G01260" species... 141 3.8e-06 1
TAIR|locus:2085964 - symbol:BHLH32 "AT3G25710" species:37... 137 4.1e-06 1
TAIR|locus:2090847 - symbol:ICE1 "AT3G26744" species:3702... 139 4.8e-06 1
TAIR|locus:2065086 - symbol:AT2G40200 "AT2G40200" species... 132 6.7e-06 1
TAIR|locus:2059979 - symbol:FBH4 "AT2G42280" species:3702... 135 7.5e-06 1
UNIPROTKB|Q6ESL3 - symbol:OJ1294_G06.8 "DNA binding prote... 135 7.6e-06 1
UNIPROTKB|Q6Z9R3 - symbol:P0461F06.33 "BHLH protein famil... 130 1.0e-05 1
TAIR|locus:2074865 - symbol:HEC2 "AT3G50330" species:3702... 129 1.0e-05 1
UNIPROTKB|Q8S0N2 - symbol:P0692C11.41-1 "BHLH transcripti... 134 1.1e-05 1
TAIR|locus:2155543 - symbol:HEC1 "HECATE 1" species:3702 ... 129 1.2e-05 1
TAIR|locus:2039094 - symbol:AIB "AT2G46510" species:3702 ... 135 1.6e-05 1
TAIR|locus:2026629 - symbol:EGL3 "AT1G63650" species:3702... 135 1.8e-05 1
TAIR|locus:2028957 - symbol:RHD6 "AT1G66470" species:3702... 130 1.8e-05 1
UNIPROTKB|Q67TR8 - symbol:B1342C04.6 "Basic helix-loop-he... 127 1.9e-05 2
WARNING: Descriptions of 47 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2053733 [details] [associations]
symbol:PIF4 "AT2G43010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA;IMP] [GO:0010161 "red light
signaling pathway" evidence=IGI] [GO:0009704 "de-etiolation"
evidence=IMP] [GO:0010600 "regulation of auxin biosynthetic
process" evidence=IDA] [GO:0010928 "regulation of auxin mediated
signaling pathway" evidence=IDA] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] [GO:0009862 "systemic
acquired resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0009585 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0010161 GO:GO:0009704 GO:GO:0010928
EMBL:AC006224 EMBL:AJ440755 EMBL:AF251694 EMBL:AY142625
EMBL:AF360221 EMBL:EF193514 EMBL:EF193515 EMBL:EF193516
EMBL:EF193517 EMBL:EF193518 EMBL:EF193519 EMBL:EF193520
EMBL:EF193521 EMBL:EF193522 EMBL:EF193523 EMBL:EF193524
EMBL:EF193525 EMBL:EF193526 EMBL:EF193527 IPI:IPI00520232
IPI:IPI00534557 PIR:H84860 RefSeq:NP_565991.2 UniGene:At.19015
ProteinModelPortal:Q8W2F3 SMR:Q8W2F3 IntAct:Q8W2F3 STRING:Q8W2F3
EnsemblPlants:AT2G43010.1 GeneID:818903 KEGG:ath:AT2G43010
TAIR:At2g43010 eggNOG:NOG244119 InParanoid:Q8W2F3 KO:K16189
OMA:IRETEME PhylomeDB:Q8W2F3 ProtClustDB:CLSN2680212
Genevestigator:Q8W2F3 GermOnline:AT2G43010 GO:GO:0010600
Uniprot:Q8W2F3
Length = 430
Score = 511 (184.9 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 141/342 (41%), Positives = 182/342 (53%)
Query: 199 PPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLND 258
PP + P + SG + + E+ + S+ TVG SHCGSN DLD+S ++
Sbjct: 129 PPPQVMPPPKFRLTNSSSG-IRETEMEQYSVTTVGPSHCGSNPSQNDLDVS------MSH 181
Query: 259 DVRKVISPSERGKTETIEPTVTXXXXXXXX-XFNRTSKQSTGDNSLKR-KSRDAVDSECQ 316
D K I E + P + F + K+ + + R ++
Sbjct: 182 DRSKNIE-------EKLNPNASSSSGGSSGCSFGKDIKEMASGRCITTDRKRKRINHT-- 232
Query: 317 SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDK 376
E+ GNK+ QRSGS RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDK
Sbjct: 233 DESVSLSDAIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDK 292
Query: 377 ASMLDEAIEYLKSLQLQLQVMWMGSGMA------PLMFPGMQHYMSRXXXXXXXXXLPSV 430
AS+LDEAI+YLKSLQLQLQVMWMGSGMA P+MFPG+Q + +
Sbjct: 293 ASILDEAIDYLKSLQLQLQVMWMGSGMAAAAASAPMMFPGVQPQQ----------FIRQI 342
Query: 431 TNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPM 490
+P+ R P++DQS A N ++CQ NPV QNQ+ + F GF M
Sbjct: 343 QSPVQLPRFPVMDQS---AIQNNPGLVCQ----NPV--QNQIISDRFARYIG---GFPHM 390
Query: 491 QANSQ--PMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAATDN 530
QA +Q PM M RF SP Q PSS + G+ D+
Sbjct: 391 QAATQMQPMEMLRFSSPAGQQS--QQPSSVPTKTTDGSRLDH 430
Score = 165 (63.1 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 43/105 (40%), Positives = 55/105 (52%)
Query: 17 WNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLR 76
W+FE + +S + + +ELVELLW++G VVL SQ H E Q QKQ
Sbjct: 6 WSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQT---------HREQTQTQKQDHH 56
Query: 77 GSGSCGNSSNLIQDDETVSWI-HCPIEDSFEKD-FYSQLFSELPP 119
SS ++D ETVSWI + P ED FE D F S FS + P
Sbjct: 57 EEAL--RSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMDP 99
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 63/263 (23%), Positives = 109/263 (41%)
Query: 61 SLNHNEPRQVQKQTLRGSGSCGNSSNLIQDDETVSWI-HCPIEDSFEKD-FYSQLFSELP 118
S H E Q QKQ SS ++D ETVSWI + P ED FE D F S FS +
Sbjct: 41 SQTHREQTQTQKQDHHEEAL--RSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMD 98
Query: 119 PSGPMEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAA 178
P + + T + + K +PP + V P+ MPPP+F + +++
Sbjct: 99 P-----LQRPTSETVKPKSSP-EPPQVM-------VKPKACPDPPPQVMPPPKFRLTNSS 145
Query: 179 PQNKNLGDLGKLVNFSQSTAPPK--GELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSH 236
+ ++ +S +T P G P D S + ++ + E SS
Sbjct: 146 SGIRET----EMEQYSVTTVGPSHCGS-NPSQNDLDVSMSHDRSKN-IEEKLNPNASSSS 199
Query: 237 CGSNQVAYDLDMSRASSSGL--NDDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTS 294
GS+ ++ D+ +S D RK I+ ++ ++ ++ + NR S
Sbjct: 200 GGSSGCSFGKDIKEMASGRCITTDRKRKRINHTD--ESVSLSDAIGNKSNQRSGS-NRRS 256
Query: 295 KQSTGDNSLKRKSRDAVDSECQS 317
+ + N +R+ RD ++ ++
Sbjct: 257 RAAEVHNLSERRRRDRINERMKA 279
>TAIR|locus:2077680 [details] [associations]
symbol:PIL6 "AT3G59060" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009693
"ethylene biosynthetic process" evidence=IMP] [GO:0010600
"regulation of auxin biosynthetic process" evidence=IDA]
[GO:0010928 "regulation of auxin mediated signaling pathway"
evidence=IDA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=RCA] [GO:0006546 "glycine catabolic process" evidence=RCA]
[GO:0006636 "unsaturated fatty acid biosynthetic process"
evidence=RCA] [GO:0006733 "oxidoreduction coenzyme metabolic
process" evidence=RCA] [GO:0006766 "vitamin metabolic process"
evidence=RCA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009106 "lipoate metabolic
process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009684
"indoleacetic acid biosynthetic process" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009965
"leaf morphogenesis" evidence=RCA] [GO:0010017 "red or far-red
light signaling pathway" evidence=RCA] [GO:0015995 "chlorophyll
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019748 "secondary metabolic process"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] [GO:0030003 "cellular cation homeostasis"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0044272 "sulfur compound biosynthetic process" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009693 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL163527 GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240264 HSSP:P22415 GO:GO:0010928
ProtClustDB:CLSN2680212 GO:GO:0010600 EMBL:AF488598 EMBL:AB103112
EMBL:AY081271 EMBL:BT000049 IPI:IPI00541791 IPI:IPI00543835
IPI:IPI00890365 PIR:T47788 RefSeq:NP_001030889.1
RefSeq:NP_001030890.1 RefSeq:NP_191465.3 RefSeq:NP_851021.1
UniGene:At.43437 UniGene:At.67329 ProteinModelPortal:Q84LH8
SMR:Q84LH8 IntAct:Q84LH8 STRING:Q84LH8 EnsemblPlants:AT3G59060.2
EnsemblPlants:AT3G59060.3 EnsemblPlants:AT3G59060.4 GeneID:825075
KEGG:ath:AT3G59060 TAIR:At3g59060 eggNOG:NOG259206
InParanoid:Q84LH8 OMA:SHCGSNQ PhylomeDB:Q84LH8
Genevestigator:Q84LH8 Uniprot:Q84LH8
Length = 444
Score = 500 (181.1 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
Identities = 135/319 (42%), Positives = 184/319 (57%)
Query: 228 SMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXX 287
S++TVG SHCGSNQ S+ ++ +S S+R K E T
Sbjct: 146 SVITVGPSHCGSNQ-----------STNIHQATTLPVSMSDRSKNVE-ERLDTSSGGSSG 193
Query: 288 XXFNRTSKQSTGDNS--LKRKSRDAVDSECQSEAA---GFESG----AGNKTAQRSGSCR 338
+ R +K++ S + RK + +D++ +S + G S GNK++QRSGS R
Sbjct: 194 CSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTR 253
Query: 339 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMW 398
RSRAAEVHNLSERRRRDRINE+M+ALQELIPHC++TDKAS+LDEAI+YLKSLQ+QLQVMW
Sbjct: 254 RSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMW 313
Query: 399 MGSGMA--------PLMFPGMQH--YMSRXXXXXXXXXLPSVTNPMHFSRVPLVDQSMSM 448
MGSGMA P+MFPG+Q Y+++ ++ + M S+ P++++S
Sbjct: 314 MGSGMAAAAAAAASPMMFPGVQSSPYINQM----------AMQSQMQLSQFPVMNRS--- 360
Query: 449 AQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP--------MQA-NSQPMNM 499
A + ++CQ NPV Q Q QN +EQ ARYMG P MQ QP +M
Sbjct: 361 APQNHPGLVCQ----NPVQLQLQAQNQILSEQLARYMGGIPQMPPAGNQMQTVQQQPADM 416
Query: 500 FRFGSPTMQNQIVSLPSSS 518
FGSP +S P+++
Sbjct: 417 LGFGSPAGPQSQLSAPATT 435
Score = 170 (64.9 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
Identities = 48/146 (32%), Positives = 71/146 (48%)
Query: 10 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 69
M DWNFE + +S + + ++ELVELLW++G VVL SQA+ R+PS+ +Q
Sbjct: 1 MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQAR--REPSVQVQTHKQ 58
Query: 70 VQKQTLRGSGSC--GNSSNL-------IQDDETVSWIHCP---IEDSFEKDFYSQLFSEL 117
+TLR + N + + D ETVSWI P + D FE +F S FS +
Sbjct: 59 ---ETLRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPDDVIDPFESEFSSHFFSSI 115
Query: 118 PPSGPMEVDKHTRQLREEKMVKFDPP 143
G E + + + + PP
Sbjct: 116 DHLGGPEKPRTIEETVKHEAQAMAPP 141
>TAIR|locus:2061634 [details] [associations]
symbol:PIL5 "phytochrome interacting factor 3-like 5"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0015995 "chlorophyll
biosynthetic process" evidence=IMP] [GO:0010187 "negative
regulation of seed germination" evidence=IGI;IMP] [GO:0010313
"phytochrome binding" evidence=IDA] [GO:0009959 "negative
gravitropism" evidence=IMP;TAS] [GO:0010029 "regulation of seed
germination" evidence=TAS] [GO:0010099 "regulation of
photomorphogenesis" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0009740 "gibberellic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=IMP] [GO:0010161 "red
light signaling pathway" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=IMP] [GO:0042802 "identical protein
binding" evidence=IPI] [GO:0009686 "gibberellin biosynthetic
process" evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010187 GO:GO:0006783 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30
GO:GO:0010161 EMBL:AC006081 HSSP:P61244 HOGENOM:HOG000240264
GO:GO:0015995 GO:GO:0010100 GO:GO:0009740 GO:GO:0009959
EMBL:AF488560 EMBL:AB103113 EMBL:AK228820 EMBL:BT029775
IPI:IPI00527244 IPI:IPI00537020 PIR:A84586 RefSeq:NP_001189559.1
RefSeq:NP_179608.2 RefSeq:NP_849996.1 UniGene:At.43003
UniGene:At.69322 ProteinModelPortal:Q8GZM7 SMR:Q8GZM7 IntAct:Q8GZM7
STRING:Q8GZM7 PRIDE:Q8GZM7 EnsemblPlants:AT2G20180.2
EnsemblPlants:AT2G20180.3 GeneID:816538 KEGG:ath:AT2G20180
TAIR:At2g20180 eggNOG:NOG264707 InParanoid:Q8GZM7 OMA:QEDEMTS
PhylomeDB:Q8GZM7 ProtClustDB:CLSN2690808 Genevestigator:Q8GZM7
GO:GO:0010313 Uniprot:Q8GZM7
Length = 478
Score = 377 (137.8 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
Identities = 125/339 (36%), Positives = 170/339 (50%)
Query: 209 GQFDRKRSGN----LTQGEVRECSMMT------VGSSHCGSNQVAYDLDMSRASSSGLND 258
G F+ R G L++ VRE + ++ +S G + D S + G +
Sbjct: 153 GDFNNGRGGESGPLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGAYN 212
Query: 259 DVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSE 318
K ++ + IE T T + + T + KRK R+A ++ ++E
Sbjct: 213 RKGKAVAMT----APAIEITGTSSSVVSK---SEIEPEKTNVDDRKRKEREATTTD-ETE 264
Query: 319 AAGFESGAGNKTAQRSG-SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKA 377
+ E+ K A+ S S +RSRAAEVHNLSER+RRDRINE+M+ALQELIP CNK+DKA
Sbjct: 265 SRSEET----KQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKA 320
Query: 378 SMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRXXXXXXXXXL---PS-VTNP 433
SMLDEAIEY+KSLQLQ+Q+M MG GM P+M+PGMQ YM PS + P
Sbjct: 321 SMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPFP 380
Query: 434 -MHFSRVPLVDQSMSMAQAQNRAVMCQ--ASVLNPVNYQ-----NQMQN-SNFTEQYARY 484
M ++ PL Q+ V + V P N Q Q Q + +T+ Y ++
Sbjct: 381 NMLAAQRPLPTQTHMAGSGPQYPVHASDPSRVFVP-NQQYDPTSGQPQYPAGYTDPYQQF 439
Query: 485 MGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFS 523
G HP +QP P QNQ S PSSS V S
Sbjct: 440 RGLHP----TQP--------PQFQNQATSYPSSSRVSSS 466
Score = 148 (57.2 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 32 MGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSNL-IQD 90
MG+D++L+ELLWQNG VV+ +Q +KPS + P+ + + S + NL IQ+
Sbjct: 33 MGEDDDLMELLWQNGQVVVQNQRLHTKKPS--SSPPKLLPSMDPQQQPS--SDQNLFIQE 88
Query: 91 DETVSWIHCPIEDSFEKDFYSQL-FSELP 118
DE SW+H P+ D DF S L FS P
Sbjct: 89 DEMTSWLHYPLRDD---DFCSDLLFSAAP 114
>UNIPROTKB|Q8GRJ1 [details] [associations]
symbol:OJ1343_B12.103 "Transcription factor BHLH9-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P61244 EMBL:AP003824 EMBL:AP004010
Uniprot:Q8GRJ1
Length = 417
Score = 386 (140.9 bits), Expect = 8.1e-43, Sum P(2) = 8.1e-43
Identities = 110/294 (37%), Positives = 152/294 (51%)
Query: 235 SHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTS 294
S CGSN V ++ A + +DD+ +P E + E P S
Sbjct: 137 SICGSNAV-----VAPALPADDDDDI-DAAAPREEEEEEEEGPGAARAAGASSSG---GS 187
Query: 295 KQSTGDNSL-KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRR 353
+G L KR + VDS SE A E+ + ++R + RR+RAAEVHNLSERRR
Sbjct: 188 GSGSGSYPLFKRGREELVDS--LSEVAD-ET----RPSKRPAAKRRTRAAEVHNLSERRR 240
Query: 354 RDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQH 413
RDRINEK+RALQEL+PHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM +G+ P+MFPG
Sbjct: 241 RDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQ 300
Query: 414 YMSRXXXXXXXXXLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQ 473
M +P +++ M+ + N+ + +N + + MQ
Sbjct: 301 LMPPMGMGLNTACMPGA-QAQGLNQMQRTTYYMNNS-LPNQMPQIPSPAMNAPSVPDDMQ 358
Query: 474 NSNFTEQYARYMGFH---PMQANSQPMNMFRFGSPTM-QNQIVSLPSSSCVPFS 523
N N R H + A +Q +F +GS QN+I L S + +P S
Sbjct: 359 NDNRIRG-PRNPFLHCNDTLTATAQVPGLFTYGSQIAEQNEIQELLSGAVIPSS 411
Score = 86 (35.3 bits), Expect = 8.1e-43, Sum P(2) = 8.1e-43
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 27 NQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPS 61
NQ KP+ D ELVELLWQ+G VV + AQT+ + S
Sbjct: 18 NQKKPLS-DGELVELLWQDGGVV--AHAQTRHRSS 49
>TAIR|locus:2012345 [details] [associations]
symbol:PIF3 "AT1G09530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009639 "response to red or far red
light" evidence=IMP] [GO:0010017 "red or far-red light signaling
pathway" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0031539
"positive regulation of anthocyanin metabolic process"
evidence=IMP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=IMP] [GO:0009704 "de-etiolation" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0007165 "signal transduction"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC003970
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0010017
GO:GO:0009704 GO:GO:0009740 GO:GO:0031539 EMBL:AF100166
EMBL:AF251693 EMBL:AF088280 EMBL:AK117255 EMBL:EF193482
EMBL:EF193483 EMBL:EF193484 EMBL:EF193485 EMBL:EF193486
EMBL:EF193487 EMBL:EF193488 EMBL:EF193489 EMBL:EF193490
EMBL:EF193491 EMBL:EF193492 EMBL:EF193493 EMBL:EF193494
EMBL:EF193495 EMBL:EF193496 IPI:IPI00530297 PIR:H86228
RefSeq:NP_172424.1 RefSeq:NP_849626.1 UniGene:At.10926
ProteinModelPortal:O80536 SMR:O80536 DIP:DIP-33892N IntAct:O80536
STRING:O80536 EnsemblPlants:AT1G09530.1 EnsemblPlants:AT1G09530.2
GeneID:837479 KEGG:ath:AT1G09530 TAIR:At1g09530 eggNOG:NOG285764
InParanoid:O80536 KO:K12126 OMA:WENGQIS PhylomeDB:O80536
ProtClustDB:CLSN2679266 Genevestigator:O80536 GermOnline:AT1G09530
Uniprot:O80536
Length = 524
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 144/416 (34%), Positives = 202/416 (48%)
Query: 36 NELVELLWQNGHVVLSSQAQTQRK---PSLNHNEPRQV---QKQTLRGSGSCGNSS---N 86
+E+VEL+W+NG + SQ+ R P N + R++ K T+ S
Sbjct: 27 DEVVELVWENGQISTQSQSSRSRNIPPPQANSSRAREIGNGSKTTMVDEIPMSVPSLMTG 86
Query: 87 LIQDDETVSWI-HCPIEDSFEKDFYSQLFSELPPS---GPMEVDKHTRQLREEKMVKFDP 142
L QDD+ V W+ H P D + DF + S + + M V++ L + + +
Sbjct: 87 LSQDDDFVPWLNHHPSLDGYCSDFLRDVSSPVTVNEQESDMAVNQTAFPLFQRRKDGNES 146
Query: 143 PGAVTSSQHPNV-NHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGK--LVNFSQSTAP 199
A +SSQ+ +HS+ + +P + + L K LVNFS P
Sbjct: 147 APAASSSQYNGFQSHSLYGSDRARDLPSQQTNPDRFTQTQEPLITSNKPSLVNFSHFLRP 206
Query: 200 PKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDD 259
+ D K + V + ++ S ++V L+ S AS++ ++
Sbjct: 207 ATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAKDSE---DKV---LNESVASATPKDNQ 260
Query: 260 VRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSEA 319
+IS K + E V + S+ + SLKRK + D +C SE
Sbjct: 261 KACLISEDSCRKDQESEKAVVCSSVGSGNSLDGPSESPS--LSLKRKHSNIQDIDCHSED 318
Query: 320 AGFESGAGNKTA--QRSG-SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDK 376
ESG G K A R+G +RSR+AEVHNLSERRRRDRINEKMRALQELIP+CNK DK
Sbjct: 319 VEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDK 378
Query: 377 ASMLDEAIEYLKSLQLQLQVMWMGSG--MAP-LMFP-GMQHYMSRXXXXXXXXXLP 428
ASMLDEAIEYLKSLQLQ+Q+M M SG + P +MFP GM HY + +P
Sbjct: 379 ASMLDEAIEYLKSLQLQVQIMSMASGYYLPPAVMFPPGMGHYPAAAAAMAMGMGMP 434
>TAIR|locus:4010713915 [details] [associations]
symbol:AT4G28811 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
HOGENOM:HOG000240264 EMBL:AJ519811 IPI:IPI00518617 PIR:H85335
PIR:T04518 RefSeq:NP_001078462.1 UniGene:At.46149
ProteinModelPortal:Q8GT73 SMR:Q8GT73 PRIDE:Q8GT73
EnsemblPlants:AT4G28811.1 GeneID:5008170 KEGG:ath:AT4G28811
TAIR:At4g28811 eggNOG:NOG314238 PhylomeDB:Q8GT73
ProtClustDB:CLSN2699107 Genevestigator:Q8GT73 Uniprot:Q8GT73
Length = 544
Score = 296 (109.3 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
Identities = 79/198 (39%), Positives = 108/198 (54%)
Query: 327 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 386
G + A S S +RSRAA++HNLSERRRR+RINE+M+ LQEL+P C KTDK SML++ IEY
Sbjct: 343 GTEEAHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVIEY 402
Query: 387 LKSLQLQLQVMWMGSGMAP-LMFPG-MQHYMSRXXXXXXXXXLP---------SVTNPMH 435
+KSLQLQ+Q+M MG GM P +M G Q +M P + P H
Sbjct: 403 VKSLQLQIQMMSMGHGMMPPMMHEGNTQQFMPHMAMGMKGMNRPPPFVPFPGKTFPRPGH 462
Query: 436 FSRV----PLVDQSMSMAQAQNRAVMCQASV-LNPVNYQNQMQNSNFTEQYARYMGFHPM 490
+ V P + QA + + + S+ NPV NQ + + Y++++G H M
Sbjct: 463 MAGVGPSYPALRYPFPDTQASDLSRVHVPSLHSNPV--PNQPRFPAYINPYSQFVGLHQM 520
Query: 491 QANSQPMNMFRFGSPTMQ 508
Q P+ G PT Q
Sbjct: 521 QQPPLPLQ----GQPTSQ 534
Score = 87 (35.7 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 35 DNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNS-SNL-IQDDE 92
++++VELLW++G VV S Q Q P + ++T+ S N+ IQ+DE
Sbjct: 108 EDDVVELLWKSGQVVQSIQTQRPIPPPIFRGSGSGGGEETVLPLPPLHPSHQNIFIQEDE 167
Query: 93 TVSWIHCPIEDSF 105
SW++ P+ +
Sbjct: 168 MASWLYHPLRQDY 180
Score = 68 (29.0 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 32 MGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ-VQKQTLRGSGSCG-------- 82
MG+D ++VELLW NG VV +SQ Q +PS P + + + GSG
Sbjct: 1 MGED-DIVELLW-NGQVVRTSQPQ---RPSSGKPSPTPPILRGSGSGSGEENAPLPLPLL 55
Query: 83 ------NSSNL-IQDDETVSWIHCPIED-SFEKDFYSQLFSELPPSGPM 123
+ NL I+++E SW+H + + Q LPP P+
Sbjct: 56 QPPRPLHHQNLFIREEEMSSWLHYSYTGVTSTPATHPQSSVSLPPPPPI 104
>UNIPROTKB|Q5NAE0 [details] [associations]
symbol:P0498A12.33 "Putative BP-5 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003020
ProteinModelPortal:Q5NAE0 Gramene:Q5NAE0 Uniprot:Q5NAE0
Length = 565
Score = 318 (117.0 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 74/128 (57%), Positives = 88/128 (68%)
Query: 294 SKQSTGDNSLKR--KSRDAVDSEC---QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNL 348
S G + L R K + +EC Q + E G K+ RS +RSR AEVHNL
Sbjct: 262 SGNGAGSDELWRQQKRKCQAQAECSASQDDDLDDEPGVLRKSGTRS--TKRSRTAEVHNL 319
Query: 349 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PL 406
SERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+LQLQ+Q+M MG+G+ P+
Sbjct: 320 SERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTGLCIPPM 379
Query: 407 MFP-GMQH 413
+ P MQH
Sbjct: 380 LLPTAMQH 387
Score = 59 (25.8 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 90 DDETVSWIHCPIEDSFEK---------DFYSQLFSEL 117
DD+TV WIH PI D + D+ S FSEL
Sbjct: 21 DDDTVPWIHYPIIDDEDAAAPAALAAADYGSDFFSEL 57
>UNIPROTKB|Q7FA23 [details] [associations]
symbol:OSJNBa0058K23.6 "Os04g0618600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP008210
EMBL:CM000141 EMBL:AL662970 RefSeq:NP_001053893.1 UniGene:Os.4548
EnsemblPlants:LOC_Os04g52770.1 GeneID:4337015 KEGG:osa:4337015
eggNOG:NOG275283 OMA:RSAEFHN ProtClustDB:CLSN2695118 Uniprot:Q7FA23
Length = 181
Score = 309 (113.8 bits), Expect = 6.1e-27, P = 6.1e-27
Identities = 60/85 (70%), Positives = 72/85 (84%)
Query: 331 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 390
A+R RRSR+AE HN SERRRRDRINEK++ALQEL+P+C KTDK SMLDEAI+YLKSL
Sbjct: 3 ARRPTPTRRSRSAEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSL 62
Query: 391 QLQLQVMWMGSGMAPLMFPGMQHYM 415
QLQLQ++ MG GMAP++ P +Q YM
Sbjct: 63 QLQLQMLVMGKGMAPVVPPELQQYM 87
>TAIR|locus:2117773 [details] [associations]
symbol:AT4G28790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 EMBL:BT015828
EMBL:BT020214 IPI:IPI00521625 IPI:IPI00529771 IPI:IPI00915578
PIR:T04520 RefSeq:NP_194608.3 RefSeq:NP_974634.1 UniGene:At.31988
ProteinModelPortal:Q9SVU6 SMR:Q9SVU6 PRIDE:Q9SVU6
EnsemblPlants:AT4G28790.1 GeneID:829000 KEGG:ath:AT4G28790
TAIR:At4g28790 HOGENOM:HOG000240264 InParanoid:Q9SVU6
PhylomeDB:Q9SVU6 ProtClustDB:CLSN2680993 Genevestigator:Q9SVU6
Uniprot:Q9SVU6
Length = 413
Score = 269 (99.8 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 80/210 (38%), Positives = 109/210 (51%)
Query: 214 KRSGNLTQGEVREC-SMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKT 272
++ GN+ G V S T+ SS S + + SRA+ +G V RGK
Sbjct: 156 RQRGNIFLGGVEAVPSNSTLLSSATESIPATHGTE-SRATVTGGVSRTFAVPGLGPRGKA 214
Query: 273 ETIEPTVTXXXXXXXXXFNRTSKQSTGDNSL----KRKSRDAVDSECQSEAAGFESGAGN 328
IE T +Q + + KRK+R+ + E Q G
Sbjct: 215 VAIETAGTQSWGLCKAETEPVQRQPATETDITDERKRKTREETNVENQ----------GT 264
Query: 329 KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLK 388
+ A+ S S +RSRAA +H LSERRRR +INE M+ALQEL+P C KTD++SMLD+ IEY+K
Sbjct: 265 EEARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVK 324
Query: 389 SLQLQLQVMWMGSGMAP-LMFPG--MQHYM 415
SLQ Q+Q+ MG M P +M+ G Q YM
Sbjct: 325 SLQSQIQMFSMGHVMIPPMMYAGNIQQQYM 354
Score = 92 (37.4 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 42/118 (35%), Positives = 57/118 (48%)
Query: 25 ISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSC--- 81
IS + MG+D ++VELL ++ VV SSQ QT PS +P + LRGSGS
Sbjct: 15 ISPEKYIMGED-DIVELLGKSSQVVTSSQTQT---PSC---DPPLI----LRGSGSGDGE 63
Query: 82 GNS-------------SNLIQDDETVSWIHCPIEDSFEKDFYSQL-FSELPPSGPMEV 125
GN S IQ+DE SW+H P + YSQL +S + + P +
Sbjct: 64 GNGPLPQPPPPLYHQQSLFIQEDEMASWLHQPNRQDY---LYSQLLYSGVASTHPQSL 118
>TAIR|locus:4010713916 [details] [associations]
symbol:AT4G28815 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
PIR:H85335 PIR:T04518 EMBL:AJ577586 IPI:IPI00530422
RefSeq:NP_001078463.1 UniGene:At.71260 ProteinModelPortal:Q7XHI7
SMR:Q7XHI7 EnsemblPlants:AT4G28815.1 GeneID:5008171
KEGG:ath:AT4G28815 TAIR:At4g28815 eggNOG:NOG83291 PhylomeDB:Q7XHI7
Genevestigator:Q7XHI7 Uniprot:Q7XHI7
Length = 307
Score = 233 (87.1 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 48/93 (51%), Positives = 66/93 (70%)
Query: 327 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 386
G + A+ S S +RSRAAE+HNL+ERRRR++INE+M+ LQ+LIP CNK+ K SML++ IEY
Sbjct: 136 GTEEARGSTSRKRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEY 195
Query: 387 LKSLQLQLQV----MWMGSGMAP--LMFPGMQH 413
+KSL++Q+ M MG P + FP H
Sbjct: 196 VKSLEMQINQFMPHMAMGMNQPPAYIPFPSQAH 228
Score = 64 (27.6 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 33/102 (32%), Positives = 46/102 (45%)
Query: 33 GQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSN------ 86
G+D ++VELL + G QTQ PS ++P + LRGSGS G N
Sbjct: 22 GED-DIVELLCKIG--------QTQI-PS---SDPLPI----LRGSGSGGREENTPLPPP 64
Query: 87 ------LIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGP 122
IQ+DE SW H P+ + S+L++ P P
Sbjct: 65 LPHQNLFIQEDEMSSWPHHPLRQDY---LCSELYASTPAPHP 103
Score = 49 (22.3 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 456 VMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQP 496
V Q+ NPV+ Q QM Y +++G H MQ + P
Sbjct: 254 VWLQSPQPNPVSNQPQMN------PYGQFVGHHQMQQSLPP 288
>TAIR|locus:2115080 [details] [associations]
symbol:SPT "AT4G36930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009908 "flower
development" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009409 "response to cold" evidence=IMP] [GO:0010114 "response
to red light" evidence=IMP] [GO:0010187 "negative regulation of
seed germination" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0048440 "carpel development" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007623 "circadian
rhythm" evidence=IEP] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0007623 GO:GO:0009409 GO:GO:0003700 GO:GO:0006351
GO:GO:0010114 GO:GO:0010187 GO:GO:0048440 GO:GO:0010154
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:Z99707 EMBL:AL161590 EMBL:AF319540
EMBL:AK229267 EMBL:BT026462 IPI:IPI00541204 PIR:B85436
RefSeq:NP_568010.1 UniGene:At.4639 ProteinModelPortal:Q9FUA4
SMR:Q9FUA4 IntAct:Q9FUA4 STRING:Q9FUA4 EnsemblPlants:AT4G36930.1
GeneID:829847 KEGG:ath:AT4G36930 TAIR:At4g36930 eggNOG:NOG276771
HOGENOM:HOG000090429 InParanoid:Q9FUA4 OMA:NAPEMIN PhylomeDB:Q9FUA4
ProtClustDB:CLSN2917674 Genevestigator:Q9FUA4 GermOnline:AT4G36930
Uniprot:Q9FUA4
Length = 373
Score = 283 (104.7 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 64/125 (51%), Positives = 83/125 (66%)
Query: 293 TSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG-----SCRRSRAAEVHN 347
+S +S+ + + +C+SE G E+ + +SG S +R RAAEVHN
Sbjct: 145 SSGTRVSSSSVGASGNETDEYDCESEEGG-EAVVDEAPSSKSGPSSRSSSKRCRAAEVHN 203
Query: 348 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG--MAP 405
LSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G + P
Sbjct: 204 LSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGINLHP 263
Query: 406 LMFPG 410
L PG
Sbjct: 264 LCLPG 268
>UNIPROTKB|Q5VRS4 [details] [associations]
symbol:OSJNBa0015I14.14 "Basic helix-loop-helix protein
SPATULA-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 EMBL:CM000143
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AP002536 KEGG:dosa:Os06t0164400-01
Uniprot:Q5VRS4
Length = 315
Score = 281 (104.0 bits), Expect = 7.0e-24, P = 7.0e-24
Identities = 61/92 (66%), Positives = 73/92 (79%)
Query: 315 CQSEAAGF---ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 371
C SEA G E+ AG + SGS +RSRAAEVHNLSE+RRR +INEKM+ALQ LIP+
Sbjct: 75 CDSEAGGSSEPEAAAGARPRGGSGS-KRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNS 133
Query: 372 NKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 403
NKTDKASMLDEAIEYLK LQLQ+Q++ M +G+
Sbjct: 134 NKTDKASMLDEAIEYLKQLQLQVQMLSMRNGV 165
>TAIR|locus:2117788 [details] [associations]
symbol:AT4G28800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 IPI:IPI00517558
IPI:IPI01020410 PIR:T04519 RefSeq:NP_194609.5 UniGene:At.71648
ProteinModelPortal:Q9SVU7 SMR:Q9SVU7 GeneID:829001
KEGG:ath:AT4G28800 TAIR:At4g28800 InParanoid:Q9SVU7
Genevestigator:Q9SVU7 Uniprot:Q9SVU7
Length = 445
Score = 242 (90.2 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 71/191 (37%), Positives = 99/191 (51%)
Query: 316 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 375
+S+ E G + A+ S S +RSR AE+HNL+ERRRR++INEKM+ LQ+LIP CNK+
Sbjct: 230 ESKLKAREETHGTEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKST 289
Query: 376 KASMLDEAIEYLKSLQLQLQVMW---MGSGMAPLMFPGMQHYMSRXXXXXXXXXLPSVTN 432
K S LD+AIEY+KSLQ Q+Q M M +G P M M+R P +
Sbjct: 290 KVSTLDDAIEYVKSLQSQIQGMMSPMMNAGNTQQFMPHMAMDMNRPPPFIP---FPGTSF 346
Query: 433 PM--HFSRV----PLVDQSMSMAQAQNRA-VMCQASVLNPVNYQNQMQNSNFTEQYARYM 485
PM + V P Q + + V + NPV+ NQ Q + Y+++
Sbjct: 347 PMPAQMAGVGPSYPAPRYPFPNIQTFDPSRVRLPSPQPNPVS--NQPQFPAYMNPYSQFA 404
Query: 486 GFHPMQANSQP 496
G H +Q P
Sbjct: 405 GPHQLQQPPPP 415
Score = 88 (36.0 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 28/94 (29%), Positives = 46/94 (48%)
Query: 34 QDNELVELLWQNGHVVLSSQAQTQR---KPSLNHN-EPRQVQKQTLRGSGSCGNSSNL-I 88
+++++VELLWQ+G VV ++Q Q P L + R + L + NL I
Sbjct: 18 REDDIVELLWQSGQVVGTNQTHRQSYDPPPILRGSGSGRGEENAPLSQPPPHLHQQNLFI 77
Query: 89 QDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGP 122
Q+ E SW+H ++ F S+L + P + P
Sbjct: 78 QEGEMYSWLHHSYRQNY---FCSELLNSTPATHP 108
>UNIPROTKB|Q948F6 [details] [associations]
symbol:OSJNBa0049O12.18 "Putative SPATULA" species:4530
"Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AC069158
ProteinModelPortal:Q948F6 Gramene:Q948F6 Genevestigator:Q948F6
Uniprot:Q948F6
Length = 298
Score = 262 (97.3 bits), Expect = 8.2e-22, P = 8.2e-22
Identities = 59/105 (56%), Positives = 76/105 (72%)
Query: 315 CQSEAA--GFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 372
C+SE A ES + A+ G +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ +
Sbjct: 6 CESEEALGSSESEQPTRPARPRG--KRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSS 63
Query: 373 KTDKASMLDEAIEYLKSLQLQLQVMWMGSGM--APLMFPGMQHYM 415
KTDKASMLD+AIEYLK LQLQ+Q++ M +G+ P+ G ++
Sbjct: 64 KTDKASMLDDAIEYLKQLQLQVQMLSMRNGLYLPPVNLSGAPEHL 108
>TAIR|locus:2155503 [details] [associations]
symbol:ALC "AT5G67110" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0010047 "fruit dehiscence" evidence=IMP]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010047 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:BT028946 EMBL:AF488605 IPI:IPI00537617
IPI:IPI00846166 IPI:IPI00846501 RefSeq:NP_001078810.1
RefSeq:NP_001078811.1 RefSeq:NP_201512.1 UniGene:At.28825
HSSP:P36956 ProteinModelPortal:Q9FHA2 SMR:Q9FHA2 IntAct:Q9FHA2
STRING:Q9FHA2 EnsemblPlants:AT5G67110.1 GeneID:836846
KEGG:ath:AT5G67110 TAIR:At5g67110 eggNOG:NOG329583
HOGENOM:HOG000033902 InParanoid:Q9FHA2 OMA:HTRINET PhylomeDB:Q9FHA2
ProtClustDB:CLSN2686902 Genevestigator:Q9FHA2 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 Uniprot:Q9FHA2
Length = 210
Score = 238 (88.8 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 52/99 (52%), Positives = 69/99 (69%)
Query: 313 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 372
SE + FE A++ S +R+ A+ HNLSE++RR +INEKM+ALQ+LIP+ N
Sbjct: 67 SETGQDKYAFEHKRSG--AKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSN 124
Query: 373 KTDKASMLDEAIEYLKSLQLQLQVMWM--GSGMAPLMFP 409
KTDKASMLDEAIEYLK LQLQ+Q + + G G+ P+ P
Sbjct: 125 KTDKASMLDEAIEYLKQLQLQVQTLAVMNGLGLNPMRLP 163
Score = 39 (18.8 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 15/50 (30%), Positives = 18/50 (36%)
Query: 100 PIEDSFE-KDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAVTS 148
P S E F Q+ S P + P K T E GAV+S
Sbjct: 12 PPSSSDELSSFLRQILSRTPTAQPSSPPKSTNVSSAETFFPSVSGGAVSS 61
>TAIR|locus:2041369 [details] [associations]
symbol:PIL1 "phytochrome interacting factor 3-like 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009641 "shade
avoidance" evidence=IEP] [GO:0010017 "red or far-red light
signaling pathway" evidence=IEP;IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 EMBL:AC004411 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0010017 GO:GO:0009641 HOGENOM:HOG000115543
ProtClustDB:CLSN2680935 EMBL:AB090873 EMBL:AY219127 EMBL:AY954840
IPI:IPI00545843 PIR:T02190 RefSeq:NP_182220.2 UniGene:At.36425
ProteinModelPortal:Q8L5W8 SMR:Q8L5W8 IntAct:Q8L5W8 STRING:Q8L5W8
PRIDE:Q8L5W8 EnsemblPlants:AT2G46970.1 GeneID:819311
KEGG:ath:AT2G46970 TAIR:At2g46970 eggNOG:NOG291407
InParanoid:Q8L5W8 OMA:MELVCEN PhylomeDB:Q8L5W8
Genevestigator:Q8L5W8 Uniprot:Q8L5W8
Length = 416
Score = 252 (93.8 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 58/132 (43%), Positives = 82/132 (62%)
Query: 290 FNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQ-----RSGSCRRSRAAE 344
F+R + + SLKRK D + E + + + + Q R +R R+ E
Sbjct: 173 FSRGTSRDLSCCSLKRKYGDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTE 232
Query: 345 VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA 404
VH L ER+RRD N+KMRALQ+L+P+C K DKAS+LDEAI+Y+++LQLQ+Q+M MG+G+
Sbjct: 233 VHKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQMMSMGNGLI 292
Query: 405 --PLMFPGMQHY 414
P M P M HY
Sbjct: 293 RPPTMLP-MGHY 303
Score = 52 (23.4 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 24 PISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTL 75
P SN +KP +D + +EL+ +NG ++ R+P N + +Q ++Q+L
Sbjct: 18 PSSN-IKPKLKDEDYMELVCENGQILAKI-----RRPKNNGSFQKQ-RRQSL 62
>TAIR|locus:2126876 [details] [associations]
symbol:UNE10 "AT4G00050" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009567
"double fertilization forming a zygote and endosperm" evidence=IMP]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0009506 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AL161471 HSSP:P22415 GO:GO:0009567
EMBL:AF069299 EMBL:AF488561 EMBL:AK117229 EMBL:BT025971
IPI:IPI00517893 PIR:T01333 RefSeq:NP_191916.3 UniGene:At.44779
ProteinModelPortal:Q8GZ38 SMR:Q8GZ38 IntAct:Q8GZ38
EnsemblPlants:AT4G00050.1 GeneID:828175 KEGG:ath:AT4G00050
TAIR:At4g00050 eggNOG:NOG239145 HOGENOM:HOG000084918
InParanoid:Q8GZ38 OMA:MMSRMNM PhylomeDB:Q8GZ38
ProtClustDB:CLSN2690671 Genevestigator:Q8GZ38 Uniprot:Q8GZ38
Length = 399
Score = 233 (87.1 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 59/125 (47%), Positives = 76/125 (60%)
Query: 290 FNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG-SCRRSRAAEVHNL 348
F TS S DN++ D DS C S E K +S S +RSRAA +HN
Sbjct: 168 FTSTSMGSH-DNTI-----DDHDSVCHSRPQ-MEDEEEKKAGGKSSVSTKRSRAAAIHNQ 220
Query: 349 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMF 408
SER+RRD+IN++M+ LQ+L+P+ +KTDKASMLDE IEYLK LQ Q+ +M M +M
Sbjct: 221 SERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVSMM-SRMNMPSMML 279
Query: 409 P-GMQ 412
P MQ
Sbjct: 280 PMAMQ 284
Score = 45 (20.9 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 35 DNELVELLWQNGHVVL 50
D E+ EL W+NG + L
Sbjct: 33 DYEVAELTWENGQLGL 48
>TAIR|locus:2047555 [details] [associations]
symbol:LRL1 "AT2G24260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC005967
HOGENOM:HOG000239571 GO:GO:0080147 EMBL:AF488599 EMBL:AK176370
EMBL:AK176390 EMBL:BT026512 IPI:IPI00528969 PIR:E84634
RefSeq:NP_180003.1 UniGene:At.20792 ProteinModelPortal:Q9ZUG9
SMR:Q9ZUG9 EnsemblPlants:AT2G24260.1 GeneID:816961
KEGG:ath:AT2G24260 TAIR:At2g24260 eggNOG:NOG284260
InParanoid:Q9ZUG9 OMA:STATCHS PhylomeDB:Q9ZUG9
ProtClustDB:CLSN2683027 Genevestigator:Q9ZUG9 Uniprot:Q9ZUG9
Length = 350
Score = 206 (77.6 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 44/106 (41%), Positives = 70/106 (66%)
Query: 296 QSTGDNSLKRKSRDAVDSECQSEAAGFESG--AGNKTAQRSGSCRRSRAAEVHNLSERRR 353
Q +G + ++ + ++ Q+ A+ G A ++ RR +A + H+++ER R
Sbjct: 97 QGSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLR 156
Query: 354 RDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 399
R+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 157 RERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSM 202
Score = 52 (23.4 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 83 NSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELP-PS 120
NSS L + S I P +DF Q+FS P PS
Sbjct: 3 NSSLLTPSSSSSSHIQTPSTTFDHEDFLDQIFSSAPWPS 41
>TAIR|locus:2163163 [details] [associations]
symbol:PIF7 "AT5G61270" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0009416
"response to light stimulus" evidence=IDA] [GO:0009704
"de-etiolation" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016607
GO:GO:0003700 GO:GO:0006351 GO:GO:0003690 GO:GO:0009585
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB010073 HSSP:P22415
GO:GO:0009704 EMBL:AF488604 EMBL:BX831447 EMBL:AY568656
EMBL:AJ630484 EMBL:AK220640 IPI:IPI00537261 IPI:IPI00656604
RefSeq:NP_001032117.1 RefSeq:NP_200935.2 UniGene:At.29114
ProteinModelPortal:Q570R7 SMR:Q570R7 IntAct:Q570R7 STRING:Q570R7
EnsemblPlants:AT5G61270.1 GeneID:836248 KEGG:ath:AT5G61270
TAIR:At5g61270 eggNOG:NOG286182 HOGENOM:HOG000097081
InParanoid:Q9FLK6 OMA:HNESERR PhylomeDB:Q570R7
ProtClustDB:CLSN2681114 Genevestigator:Q570R7 Uniprot:Q570R7
Length = 366
Score = 216 (81.1 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 50/113 (44%), Positives = 68/113 (60%)
Query: 298 TGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRI 357
TGD R + D+E + E+G N G RR RAA +HN SERRRRDRI
Sbjct: 131 TGDRDYFRSGSETQDTEGDEQETRGEAGRSN------G--RRGRAAAIHNESERRRRDRI 182
Query: 358 NEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP-LMFP 409
N++MR LQ+L+P +K DK S+LD+ IE+LK LQ Q+Q M + + + +M P
Sbjct: 183 NQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQFMSLRANLPQQMMIP 235
Score = 41 (19.5 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 40 ELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRG 77
EL W+NG + + + +P+ ++N P + Q+L G
Sbjct: 8 ELTWENGQLTVHGLGD-EVEPTTSNN-P--IWTQSLNG 41
>UNIPROTKB|Q94LR3 [details] [associations]
symbol:OSJNBa0010C11.7 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC069300 RefSeq:NP_001065353.1
UniGene:Os.27587 IntAct:Q94LR3 STRING:Q94LR3 GeneID:4349351
KEGG:osa:4349351 ProtClustDB:CLSN2714538 Uniprot:Q94LR3
Length = 191
Score = 191 (72.3 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 64/183 (34%), Positives = 88/183 (48%)
Query: 349 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMW-MGSGMAPLM 407
+ +RRDRIN+KM+ LQ+L+P+ +KTDKASMLDE I+YLK LQ Q+QVM MGS M P+
Sbjct: 9 NNHKRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQVMSRMGSMMMPMG 68
Query: 408 FPGMQHYMSRXXXXXXXXXLP-SVTN--------PMHFSRVPLVDQSMSMAQAQNRAVMC 458
Q MS + S+ N PMH P + S A + + A
Sbjct: 69 MAMPQLQMSVMAQMAQMAQIGLSMMNMGQAGGYAPMHMHTPPFLPVSWDAAASSSSAAAA 128
Query: 459 QASVLNPVNYQNQMQNSNF-TEQYARYMGFHP--MQANSQPMNMFRFGSPTMQNQIVSLP 515
P S F Q A+ P M+A ++ M M++ + Q Q P
Sbjct: 129 DRPP-QPTGAATSDAFSAFLASQAAQQNAQQPNGMEAYNRMMAMYQKLNHQQQQQ-QDQP 186
Query: 516 SSS 518
S+S
Sbjct: 187 SNS 189
>TAIR|locus:2126624 [details] [associations]
symbol:LRL2 "AT4G30980" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL022198
EMBL:AL161578 HOGENOM:HOG000239571 GO:GO:0080147
ProtClustDB:CLSN2683027 EMBL:AF488601 IPI:IPI00524968 PIR:G85362
RefSeq:NP_194827.2 UniGene:At.31786 ProteinModelPortal:Q8S3D5
SMR:Q8S3D5 EnsemblPlants:AT4G30980.1 GeneID:829223
KEGG:ath:AT4G30980 TAIR:At4g30980 eggNOG:NOG295725
InParanoid:O65552 OMA:GGSHENT PhylomeDB:Q8S3D5
Genevestigator:Q8S3D5 Uniprot:Q8S3D5
Length = 310
Score = 203 (76.5 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 47/107 (43%), Positives = 67/107 (62%)
Query: 297 STGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS----CRRSRAAEVHNLSERR 352
STG ++ QS+A + G TAQ RR +A + H+++ER
Sbjct: 89 STGSLPFHLPQGSGGQTQTQSQATA-SATTGGATAQPQTKPKVRARRGQATDPHSIAERL 147
Query: 353 RRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 399
RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 148 RRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSM 194
>TAIR|locus:2132303 [details] [associations]
symbol:UNE12 "AT4G02590" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0031347 "regulation of defense response"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0007275 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000239571
ProtClustDB:CLSN2687635 EMBL:AC002330 EMBL:AL161494 GO:GO:0031347
GO:GO:0009567 EMBL:AF488592 EMBL:AF367328 EMBL:AY143951
EMBL:AY088218 IPI:IPI00545077 IPI:IPI00892352 PIR:T01090
RefSeq:NP_001031577.1 RefSeq:NP_001118919.1 RefSeq:NP_567245.1
UniGene:At.20028 ProteinModelPortal:O22768 SMR:O22768 IntAct:O22768
PaxDb:O22768 PRIDE:O22768 EnsemblPlants:AT4G02590.1
EnsemblPlants:AT4G02590.2 GeneID:828126 KEGG:ath:AT4G02590
TAIR:At4g02590 eggNOG:euNOG02041 InParanoid:O22768 OMA:PAWEKWS
PhylomeDB:O22768 Genevestigator:O22768 Uniprot:O22768
Length = 310
Score = 201 (75.8 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 52/124 (41%), Positives = 76/124 (61%)
Query: 299 GDNSLKRKSRDAVDSECQSEAAGFE---------SGAGNKTAQRSG-SCRRSRAAEVHNL 348
G S KR S D VD+ C S F S T+ R RR +A + H++
Sbjct: 100 GHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSI 159
Query: 349 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM----GSG-M 403
+ER RR+RI E++RALQEL+P NKTD+A+M+DE ++Y+K L+LQ++V+ M G+G +
Sbjct: 160 AERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAV 219
Query: 404 APLM 407
APL+
Sbjct: 220 APLV 223
>TAIR|locus:2147760 [details] [associations]
symbol:LRL3 "AT5G58010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0080147 "root hair cell development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P36956 HOGENOM:HOG000239571 GO:GO:0080147
EMBL:AB026635 EMBL:AF488614 IPI:IPI00540554 RefSeq:NP_200609.1
UniGene:At.29300 ProteinModelPortal:Q9LSQ3 SMR:Q9LSQ3 PRIDE:Q9LSQ3
EnsemblPlants:AT5G58010.1 GeneID:835913 KEGG:ath:AT5G58010
TAIR:At5g58010 eggNOG:NOG252939 InParanoid:Q9LSQ3 OMA:TEQRVAK
PhylomeDB:Q9LSQ3 ProtClustDB:CLSN2916934 Genevestigator:Q9LSQ3
Uniprot:Q9LSQ3
Length = 297
Score = 196 (74.1 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 37/62 (59%), Positives = 53/62 (85%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
RR +A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE IEY++ LQLQ++V+
Sbjct: 102 RRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKVL 161
Query: 398 WM 399
M
Sbjct: 162 SM 163
>UNIPROTKB|Q7Y1H4 [details] [associations]
symbol:OSJNBa0094F01.11 "Putative uncharacterized protein
OSJNBa0094F01.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0009567
EMBL:AC093713 EMBL:AK104412 RefSeq:NP_001051563.1 UniGene:Os.27522
EnsemblPlants:LOC_Os03g58330.1 GeneID:4334429 KEGG:osa:4334429
OMA:TDGTERQ ProtClustDB:CLSN2694399 Uniprot:Q7Y1H4
Length = 294
Score = 194 (73.4 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 39/84 (46%), Positives = 59/84 (70%)
Query: 316 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 375
QS+ G G + RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD
Sbjct: 114 QSKQGGAAVGPQPPAPRPKVRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTD 173
Query: 376 KASMLDEAIEYLKSLQLQLQVMWM 399
+A+MLDE ++Y+K L+LQ++V+ M
Sbjct: 174 RAAMLDEILDYVKFLRLQVKVLSM 197
>UNIPROTKB|Q2QMM0 [details] [associations]
symbol:LOC_Os12g40710 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 Gramene:Q2QMM0 Uniprot:Q2QMM0
Length = 266
Score = 188 (71.2 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 43/103 (41%), Positives = 63/103 (61%)
Query: 317 SEAAGFESGAGNKTAQRSGSCRRSR-AAEVHNLSERRRRDRINEKMRALQELIPHC-NKT 374
S+ +G K + +G R R AA HNL+E+RRR +I E+ R LQ L+P C NK+
Sbjct: 57 SDDSGERKKKKKKASSAAGKASRHRHAAGAHNLTEKRRRFKITERFRTLQRLVPGCDNKS 116
Query: 375 DKASMLDEAIEYLKSLQLQLQVMW-MGSGMAPLMFPGMQHYMS 416
++AS LD+ I+Y+KSLQ QL+ +GS A +++P H S
Sbjct: 117 NQASTLDQTIQYMKSLQHQLEATSAVGSPAAAVLYPAAVHPQS 159
>UNIPROTKB|Q6Z7E7 [details] [associations]
symbol:P0020C11.18 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:CM000139
EMBL:AP004865 EMBL:AK241924 EnsemblPlants:LOC_Os02g35660.1
OMA:TTAMQYL Uniprot:Q6Z7E7
Length = 524
Score = 198 (74.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 43/91 (47%), Positives = 64/91 (70%)
Query: 321 GFESG-AGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASM 379
G SG AGN + RR +A + H+++ER RR++I+++M+ LQEL+P+ NKT+KASM
Sbjct: 299 GNGSGSAGNGAPKPRVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASM 358
Query: 380 LDEAIEYLKSLQLQLQVMWMGS-GMAPLMFP 409
LDE I+Y+K LQLQ++V+ M G A + P
Sbjct: 359 LDEIIDYVKFLQLQVKVLSMSRLGAAEAVVP 389
>TAIR|locus:2007534 [details] [associations]
symbol:AT1G03040 "AT1G03040" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF251692
EMBL:AC006550 EMBL:AY054469 EMBL:AY114633 IPI:IPI00529284
PIR:B86161 RefSeq:NP_001184895.1 RefSeq:NP_563672.1
UniGene:At.20497 ProteinModelPortal:Q93Y00 SMR:Q93Y00 IntAct:Q93Y00
PaxDb:Q93Y00 PRIDE:Q93Y00 EnsemblPlants:AT1G03040.1 GeneID:839446
KEGG:ath:AT1G03040 TAIR:At1g03040 eggNOG:NOG281566
HOGENOM:HOG000239571 InParanoid:Q93Y00 OMA:SIVKPEM PhylomeDB:Q93Y00
ProtClustDB:CLSN2687635 Genevestigator:Q93Y00 Uniprot:Q93Y00
Length = 302
Score = 190 (71.9 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 48/123 (39%), Positives = 77/123 (62%)
Query: 300 DNSLKRKSRDAVDSECQSEAAGFESGAGNKTA-----QRSG-----SCRRSRAAEVHNLS 349
D + KR D +D+ C S F ++ A Q+S RR +A + H+++
Sbjct: 99 DETGKRFQDDVLDNRCSSMKPIFHGQPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIA 158
Query: 350 ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM----GSG-MA 404
ER RR+RI E++R+LQEL+P NKTD+A+M+DE ++Y+K L+LQ++V+ M G+G +A
Sbjct: 159 ERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVA 218
Query: 405 PLM 407
PL+
Sbjct: 219 PLV 221
>UNIPROTKB|Q69Y51 [details] [associations]
symbol:P0698A06.26-2 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP003514
ProteinModelPortal:Q69Y51 EnsemblPlants:LOC_Os06g09370.3
Gramene:Q69Y51 HOGENOM:HOG000241730 Uniprot:Q69Y51
Length = 401
Score = 192 (72.6 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 53/151 (35%), Positives = 83/151 (54%)
Query: 324 SGAGNKT-AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 382
S GN A+ RR +A + H+++ER RR++I+E+M+ LQ L+P+ NK DKASMLDE
Sbjct: 227 SAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDE 286
Query: 383 AIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRXXXXXXXXXLPSVTNPMHFSRVP-L 441
I+Y+K LQLQ++V+ M+ L PG + R PS++ P +
Sbjct: 287 IIDYVKFLQLQVKVL----SMSRLGAPGAVLPLLRESQTECHSN-PSLSASTISQGPPDM 341
Query: 442 VDQSMSMAQAQNRAVMCQASVLNPVNY-QNQ 471
D S A Q + + S+++ + Y QN+
Sbjct: 342 PDSEDSSAFEQEVVKLMETSIISAMQYLQNK 372
>UNIPROTKB|Q6Z2G7 [details] [associations]
symbol:P0680A05.9 "Putative bHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008208 eggNOG:NOG251551 EMBL:AP005323 EMBL:AK119183
RefSeq:NP_001047868.1 UniGene:Os.7751
EnsemblPlants:LOC_Os02g47660.1 GeneID:4330462 KEGG:osa:4330462
OMA:TVESLCQ ProtClustDB:CLSN2693116 Uniprot:Q6Z2G7
Length = 361
Score = 190 (71.9 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 44/97 (45%), Positives = 63/97 (64%)
Query: 304 KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRA 363
K+K+ A + + +A + AG KT RR +A + H+L+ER RR+RI+E+MR
Sbjct: 134 KKKAEVASPKDSPATSASTVT-AGQKTDYIHVRARRGQATDSHSLAERVRRERISERMRY 192
Query: 364 LQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 399
LQEL+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 193 LQELVPGCNKVTGKAGMLDEIINYVQSLQKQVEFLSM 229
>UNIPROTKB|Q6EPZ6 [details] [associations]
symbol:P0014G10.34 "BHLH transcription factor PTF1-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 HOGENOM:HOG000239571 EMBL:AP005784
RefSeq:NP_001175840.1 UniGene:Os.59658
EnsemblPlants:LOC_Os09g25040.1 GeneID:9272478 KEGG:osa:9272478
OMA:SMSVLTA Uniprot:Q6EPZ6
Length = 499
Score = 187 (70.9 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 44/83 (53%), Positives = 60/83 (72%)
Query: 316 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-- 373
Q+ AAG GA QR + RR +A + H+++ER RR+RI E+M+ALQEL+P+ NK
Sbjct: 234 QAGAAG--GGAPAPPRQRVRA-RRGQATDPHSIAERLRRERIAERMKALQELVPNANKLM 290
Query: 374 -TDKASMLDEAIEYLKSLQLQLQ 395
TDKASMLDE I+Y+K LQLQ++
Sbjct: 291 QTDKASMLDEIIDYVKFLQLQVK 313
Score = 44 (20.5 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 108 DFYSQLFSELPPS 120
DF Q+ S LPPS
Sbjct: 34 DFLDQMLSSLPPS 46
>TAIR|locus:2098008 [details] [associations]
symbol:PIL2 "phytochrome interacting factor 3-like 2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010017 "red or far-red light signaling
pathway" evidence=IEP] [GO:0010089 "xylem development"
evidence=RCA] [GO:0044036 "cell wall macromolecule metabolic
process" evidence=RCA] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 GO:GO:0010017
EMBL:AL138651 EMBL:AB090874 EMBL:BT033108 IPI:IPI00525935
IPI:IPI00846835 PIR:T48001 RefSeq:NP_001078329.1 RefSeq:NP_191768.2
UniGene:At.1005 UniGene:At.50304 ProteinModelPortal:Q8L5W7
SMR:Q8L5W7 IntAct:Q8L5W7 STRING:Q8L5W7 EnsemblPlants:AT3G62090.2
GeneID:825382 KEGG:ath:AT3G62090 TAIR:At3g62090 eggNOG:NOG305930
HOGENOM:HOG000115543 InParanoid:Q8L5W7 OMA:ETNMLES PhylomeDB:Q8L5W7
ProtClustDB:CLSN2680935 Genevestigator:Q8L5W7 Uniprot:Q8L5W7
Length = 363
Score = 184 (69.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 61/175 (34%), Positives = 90/175 (51%)
Query: 239 SNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXXXX--FNRTSKQ 296
SN+ D + +ASSS R ++ R K + I P F+ +S
Sbjct: 95 SNKHVDDSETLKASSSK-----RMMVDYHNRKKIKFIPPDEQSVVADRSFKLGFDTSSVG 149
Query: 297 STGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDR 356
T D+ ++D E S+ A + A +T R +R R AE +N ER +R+
Sbjct: 150 FTEDSEGSMYLSSSLDDE--SDDARPQVPA--RT--RKALVKRKRNAEAYNSPERNQRND 203
Query: 357 INEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG-MAP-LMFP 409
IN+KMR LQ L+P+ +K D SMLDEAI Y+ +LQLQ+Q+M MG+ + P +M P
Sbjct: 204 INKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQLQVQMMTMGNRFVTPSMMMP 258
Score = 40 (19.1 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 498 NMFRF----GSPTMQNQIVSLPSSSCVPFS 523
+M RF G MQN +P+ +C P S
Sbjct: 299 DMLRFLNHPGLMPMQNSAPFIPTENCSPQS 328
>UNIPROTKB|Q2R0R9 [details] [associations]
symbol:LOC_Os11g41640 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240244 KEGG:dosa:Os11t0634700-00 Gramene:Q2R0R9
OMA:SLYAKRR Uniprot:Q2R0R9
Length = 246
Score = 173 (66.0 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 45/133 (33%), Positives = 80/133 (60%)
Query: 292 RTSKQSTGDNSLK--RKSRDAVDSECQS-EAAGFESGA---GNKTAQRSGSCRRSR--AA 343
RTS+ + +++ S + V+ C S + G +S A G+ ++S + R + +
Sbjct: 104 RTSRSVSSSSTITDYETSSELVNPSCSSGSSVGEDSIAATDGSVVLKQSDNSRGHKQCSK 163
Query: 344 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-----W 398
+ +L +RRR+RINE++R LQ+L+P+ K D ++ML+EA++Y+K LQLQ++++ W
Sbjct: 164 DTQSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDTW 223
Query: 399 MGSGMAPLMFPGM 411
M APL + GM
Sbjct: 224 M---FAPLAYNGM 233
>UNIPROTKB|Q69WS3 [details] [associations]
symbol:OJ1118_E12.15 "Putative bHLH protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003743
ProteinModelPortal:Q69WS3 Gramene:Q69WS3 Uniprot:Q69WS3
Length = 268
Score = 175 (66.7 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 306 KSRDAVDSECQSEAAGFESGAGNKTAQRSGS-------------CRRSRAAEVHNLSERR 352
KS D DS ++EA G +SG +K A ++ + RR +A + H+L+ER
Sbjct: 88 KSSDKNDS-LRTEA-GTDSGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLAERA 145
Query: 353 RRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMW 398
RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y++SLQ Q++ M+
Sbjct: 146 RREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQSLQHQVEFMF 192
>UNIPROTKB|Q2QMV9 [details] [associations]
symbol:LOC_Os12g39850 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
KEGG:dosa:Os12t0589000-00 OMA:DESEMMA Uniprot:Q2QMV9
Length = 304
Score = 176 (67.0 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 42/105 (40%), Positives = 65/105 (61%)
Query: 312 DSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 371
DS E A ++GA +K R+G R A + +L R+RR+RINE+++ LQ L+P+
Sbjct: 198 DSSSSQEVA--DAGATSKGKSRAG---RGAATDPQSLYARKRRERINERLKTLQNLVPNG 252
Query: 372 NKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 411
K D ++ML+EA+ Y+K LQLQ+++ MWM AP+ + GM
Sbjct: 253 TKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWM---YAPIAYNGM 294
Score = 41 (19.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 94 VSWIHCPIED-SFEKDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAVTSSQHP 152
+SW + S E + +QLFS P G E + + + A +S+ +
Sbjct: 10 MSWTVFDLPSHSDESEMMAQLFSAFPIHGEEEGHEQLPWFDQSSNPCYYSCNA-SSTAYS 68
Query: 153 NVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLG 185
N N S +P P +E + + N+ LG
Sbjct: 69 NSNASSIPA-------PSEYEGYCFSDSNEALG 94
>UNIPROTKB|Q75M33 [details] [associations]
symbol:P0668H12.5 "BHLH transcription factor" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000142 EMBL:AC084818 EMBL:AC073405 EMBL:HQ858853
EMBL:AK065864 RefSeq:NP_001054390.1 UniGene:Os.23082
EnsemblPlants:LOC_Os05g01256.1 EnsemblPlants:LOC_Os05g01256.2
GeneID:4337537 KEGG:osa:4337537 eggNOG:NOG296531 Uniprot:Q75M33
Length = 339
Score = 179 (68.1 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 44/99 (44%), Positives = 66/99 (66%)
Query: 318 EAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDK 376
EAAG E AG + RR +A + H+L+ER RR++I+E+M+ LQ L+P C+K T K
Sbjct: 167 EAAGGEPPAGYIHVR----ARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGK 222
Query: 377 ASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF---PGM 411
A MLDE I Y++SLQ Q++ + M + ++PLM+ PG+
Sbjct: 223 ALMLDEIISYVQSLQNQVEFLSMKLASLSPLMYEFGPGI 261
>TAIR|locus:2202867 [details] [associations]
symbol:BPEp "AT1G59640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048446 "petal morphogenesis" evidence=IMP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] [GO:0009694 "jasmonic acid
metabolic process" evidence=RCA] [GO:0009753 "response to jasmonic
acid stimulus" evidence=RCA] [GO:0009827 "plant-type cell wall
modification" evidence=RCA] [GO:0009860 "pollen tube growth"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0048441 "petal development" evidence=RCA] [GO:0048443 "stamen
development" evidence=RCA] [GO:0048481 "ovule development"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AM269753 EMBL:AM269754
EMBL:AC009317 EMBL:BT003964 EMBL:BT005064 EMBL:AY086373
EMBL:AB028232 IPI:IPI00530097 IPI:IPI00531813 PIR:B96620 PIR:T52428
RefSeq:NP_564749.1 RefSeq:NP_849829.1 UniGene:At.455
ProteinModelPortal:Q0JXE7 SMR:Q0JXE7 IntAct:Q0JXE7 STRING:Q0JXE7
PRIDE:Q0JXE7 EnsemblPlants:AT1G59640.2 GeneID:842254
KEGG:ath:AT1G59640 TAIR:At1g59640 eggNOG:NOG296410
InParanoid:Q0JXE7 OMA:RGASPEW PhylomeDB:Q0JXE7
ProtClustDB:CLSN2688917 Genevestigator:Q0JXE7 GO:GO:0048446
Uniprot:Q0JXE7
Length = 343
Score = 179 (68.1 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 45/124 (36%), Positives = 75/124 (60%)
Query: 297 STGDNSLKRKSRDAV-DSECQSEAAGFESGAGNKTAQRSGS-----CRRSRAAEVHNLSE 350
S G+N KR+ D V D + ++E+ G E+ + + + RR +A + H+L+E
Sbjct: 94 SEGEN--KRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAE 151
Query: 351 RRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF 408
R RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++ + M + M
Sbjct: 152 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 211
Query: 409 PGMQ 412
PG++
Sbjct: 212 PGIE 215
>TAIR|locus:2204898 [details] [associations]
symbol:HFR1 "AT1G02340" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007165 "signal transduction" evidence=TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009585 "red, far-red light
phototransduction" evidence=TAS] [GO:0009642 "response to light
intensity" evidence=IEP] [GO:0009785 "blue light signaling pathway"
evidence=TAS] [GO:0003712 "transcription cofactor activity"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009738
"abscisic acid mediated signaling pathway" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0009738
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003712
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC064879
GO:GO:0009642 GO:GO:0009785 EMBL:AF288287 EMBL:AF324245
EMBL:AF323182 EMBL:AK117248 IPI:IPI00545685 PIR:G86153
RefSeq:NP_563650.1 UniGene:At.24795 ProteinModelPortal:Q9FE22
SMR:Q9FE22 IntAct:Q9FE22 STRING:Q9FE22 PRIDE:Q9FE22
EnsemblPlants:AT1G02340.1 GeneID:839300 KEGG:ath:AT1G02340
TAIR:At1g02340 eggNOG:NOG274868 HOGENOM:HOG000112891 OMA:FSSHAMR
PhylomeDB:Q9FE22 ProtClustDB:CLSN2916946 Genevestigator:Q9FE22
GermOnline:AT1G02340 Uniprot:Q9FE22
Length = 292
Score = 176 (67.0 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 38/73 (52%), Positives = 54/73 (73%)
Query: 349 SERRRRD-RINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLM 407
S+RRRRD +++ KMR LQ+L+P+C+KTDK S+LD+ IEY+K+LQLQLQ+M G+ P
Sbjct: 141 SKRRRRDEKMSNKMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQLQLQMM-STVGVNPYF 199
Query: 408 FP-----GMQHYM 415
P GM ++M
Sbjct: 200 LPATLGFGMHNHM 212
>UNIPROTKB|Q6K8Y4 [details] [associations]
symbol:OJ1695_H09.18 "Basic helix-loop-helix (BHLH)-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000239571 EMBL:AP003975 EMBL:AP004094
EnsemblPlants:LOC_Os02g55250.1 OMA:GQDDFFD Uniprot:Q6K8Y4
Length = 463
Score = 169 (64.5 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 36/60 (60%), Positives = 48/60 (80%)
Query: 353 RRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMG-----SGMAPLM 407
RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M S +APL+
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAPLV 311
Score = 55 (24.4 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 313 SECQSEAAGFESGAGNKTAQRSGS-CRRSRAAEVHNLSER 351
S + AAG SG G R RR +A + H+++ER
Sbjct: 189 SASAAAAAGASSGGGAAAPPRQRQRARRGQATDPHSIAER 228
Score = 38 (18.4 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 506 TMQNQIVSLPSSSCVPFSGGAA 527
++ I S SSS +P +GG A
Sbjct: 381 SLATAISSATSSSLLPRTGGGA 402
Score = 37 (18.1 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 106 EKDFYSQLFSELP 118
+ DF+ Q+ S LP
Sbjct: 19 QDDFFDQMLSTLP 31
>TAIR|locus:2201906 [details] [associations]
symbol:AT1G10120 "AT1G10120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC004122 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:BT012655 EMBL:AK221806 EMBL:AK229309
EMBL:AK230347 EMBL:AF488606 IPI:IPI00541831 PIR:T00632
RefSeq:NP_172483.4 UniGene:At.43391 UniGene:At.69296
ProteinModelPortal:Q6NKN9 SMR:Q6NKN9 EnsemblPlants:AT1G10120.1
GeneID:837549 KEGG:ath:AT1G10120 TAIR:At1g10120 eggNOG:NOG271189
HOGENOM:HOG000090626 InParanoid:Q6NKN9 OMA:GESSHED PhylomeDB:Q6NKN9
ProtClustDB:CLSN2681496 Genevestigator:Q6NKN9 Uniprot:Q6NKN9
Length = 366
Score = 178 (67.7 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 49/110 (44%), Positives = 68/110 (61%)
Query: 296 QSTGDNSLKR----KSRDAVDSEC-QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSE 350
Q D S K+ +S++ V+ E QSE A E N R+ RR +A H+L+E
Sbjct: 169 QRGNDQSQKKHKNDQSKETVNKESSQSEEAPKE----NYIHMRA---RRGQATNSHSLAE 221
Query: 351 RRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 399
R RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 222 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM 271
>UNIPROTKB|Q2QMN2 [details] [associations]
symbol:LOC_Os12g40590 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 EMBL:CM000149 eggNOG:NOG272270
KEGG:dosa:Os12t0597800-01 Uniprot:Q2QMN2
Length = 265
Score = 172 (65.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 343 AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG 402
AE H L+E+RRR RINEK + LQ L+P C+K ++S LD I Y+KSLQ QLQ M+
Sbjct: 154 AETHGLTEKRRRSRINEKFKMLQRLVPGCDKCSQSSTLDRTIHYMKSLQQQLQAMYPTMV 213
Query: 403 MAPLMFPGMQ 412
++P +Q
Sbjct: 214 RPAAVYPVVQ 223
>UNIPROTKB|Q84T08 [details] [associations]
symbol:OSJNBa0087C10.10 "BHLH transcription factor,
putative, expressed" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC108906 RefSeq:NP_001051605.1
UniGene:Os.33544 STRING:Q84T08 EnsemblPlants:LOC_Os03g58830.1
GeneID:4334471 KEGG:osa:4334471 OMA:GTSTSEW ProtClustDB:CLSN2694415
Uniprot:Q84T08
Length = 265
Score = 171 (65.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 41/109 (37%), Positives = 65/109 (59%)
Query: 294 SKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQR--SGSCRRSRAAEVHNLSER 351
+ +S+GDNS R + DS S++ Q RR +A + H+L+ER
Sbjct: 94 ASKSSGDNSSLRTEAET-DSRNASKSGDQNPPPPEPPKQDYIHVRARRGQATDSHSLAER 152
Query: 352 RRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM 399
RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y+++LQ Q++ + M
Sbjct: 153 ARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVEFLSM 201
>UNIPROTKB|Q6AUE8 [details] [associations]
symbol:OSJNBb0029I19.4 "Os03g0639300 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
GO:GO:0005634 EMBL:AP008209 EMBL:AC128646 RefSeq:NP_001173558.1
UniGene:Os.19229 STRING:Q6AUE8 GeneID:9270162 KEGG:osa:9270162
Uniprot:Q6AUE8
Length = 307
Score = 174 (66.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 64/213 (30%), Positives = 94/213 (44%)
Query: 10 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 69
MN +PDW+ GD + +G+D+ L+ELLW NGHVV+ SQ ++ P PR
Sbjct: 1 MNQFVPDWSNMGDAS-----RTLGEDDNLIELLWCNGHVVMQSQNHHRKLP------PRP 49
Query: 70 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELP--------PSG 121
+K ++ +Q+DE W + DS EKD +S LF E P P+G
Sbjct: 50 PEKA----------AAAAVQEDEAGLWFPFALADSLEKDIFSDLFYEAPVAATAEAAPAG 99
Query: 122 P-MEVDKHTRQLR-EEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAP 179
P D + + + M + + G +S+ P + P NA R + A
Sbjct: 100 PGAGADGEGKTCKGDAAMAEEERGGPGAASEAPR--ELMPPPKSTNASCS-RQQTMSLAD 156
Query: 180 QNKNLGDLGKLVNFSQST---APPKGELGPCSG 209
N GDL +LV +S+ A K E G G
Sbjct: 157 GGDNAGDLSELVRARRSSGGAARRKAEAGGGGG 189
Score = 129 (50.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 72/268 (26%), Positives = 91/268 (33%)
Query: 88 IQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAVT 147
+Q+DE W + DS EKD +S LF E P + E + K G
Sbjct: 58 VQEDEAGLWFPFALADSLEKDIFSDLFYEAPVAATAEAAPAGPGAGADGEGK-TCKGDAA 116
Query: 148 SSQHPNVNHSVVPELQRNAMPPP--------RFEVHDAAPQNKNLGDLGKLVNFSQSTAP 199
++ E R MPPP R + A N GDL +LV +S+
Sbjct: 117 MAEEERGGPGAASEAPRELMPPPKSTNASCSRQQTMSLADGGDNAGDLSELVRARRSSG- 175
Query: 200 PKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDD 259
G RK G + +GSS CGSNQV + AS G
Sbjct: 176 ---------GAARRKAEAGGGGGGASSSMLSAIGSSICGSNQV--QVQQRTASEPG---- 220
Query: 260 VRKVISPSERGKTETIE------------PTVTXXXXXXXXXFNRTSKQ---STGDNSLK 304
R+ PS G I TV F T+ ST + S K
Sbjct: 221 -RRGAPPSAVGSANAIPCGGRDHGHGHEATTVASSSGRSNCCFGTTTTTEPTSTSNRSSK 279
Query: 305 RKSRDAV-DSECQSEAAGFESGAGNKTA 331
RK D DSE SE S N+ A
Sbjct: 280 RKRLDTTEDSESPSEVGVLPSNT-NRDA 306
>UNIPROTKB|Q8GZV6 [details] [associations]
symbol:OJ1017C11.10 "Putative uncharacterized protein
OJ1017C11.10" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR001810
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50181 PROSITE:PS50888
SMART:SM00256 SMART:SM00353 GO:GO:0005634 SUPFAM:SSF81383
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR019955
PROSITE:PS50053 EMBL:AC135157 ProteinModelPortal:Q8GZV6
Gramene:Q8GZV6 Uniprot:Q8GZV6
Length = 776
Score = 182 (69.1 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 57/186 (30%), Positives = 90/186 (48%)
Query: 227 CSMMTVGSSHC---GSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTXXX 283
CS HC G+NQ+A LD++ + V + + G + PT
Sbjct: 512 CSAAASSQGHCFAVGANQLA-SLDLAMDFDEPILFPVHN--ASLQEG-IQFYNPTGDTQL 567
Query: 284 XXXXXX---FNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESG--AGNKTAQRSG--- 335
+ ++ +G+ S S++ Q E + +G AG+ A R
Sbjct: 568 SRNMSIDKCLKGSKRKGSGEGSSSLHSQEETGEMPQRELSMEHAGEKAGDADASREEYVH 627
Query: 336 -SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQ 393
+R +A H+L+ER RR++INE+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q
Sbjct: 628 VRAKRGQATNSHSLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEIINYVQSLQRQ 687
Query: 394 LQVMWM 399
++ + M
Sbjct: 688 VEFLSM 693
>TAIR|locus:2118934 [details] [associations]
symbol:RSL2 "AT4G33880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0048766 "root hair initiation"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009733 GO:GO:0003677 GO:GO:0016049 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL031032
EMBL:AL161584 HOGENOM:HOG000240244 GO:GO:0048766 EMBL:AF488616
EMBL:BT003137 EMBL:AK228110 IPI:IPI00526320 PIR:T05216
RefSeq:NP_195114.2 UniGene:At.31542 ProteinModelPortal:Q84WK0
SMR:Q84WK0 EnsemblPlants:AT4G33880.1 GeneID:829531
KEGG:ath:AT4G33880 TAIR:At4g33880 eggNOG:NOG318365
InParanoid:Q84WK0 OMA:TINTNSY PhylomeDB:Q84WK0
ProtClustDB:CLSN2680247 Genevestigator:Q84WK0 Uniprot:Q84WK0
Length = 352
Score = 175 (66.7 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 42/125 (33%), Positives = 70/125 (56%)
Query: 294 SKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAA--EVHNLSER 351
S+Q++ + + D + E + + +K +G R SR A + +L R
Sbjct: 223 SRQNSSTTFCTEEESNCADQDGGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYAR 282
Query: 352 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-----WMGSGMAPL 406
+RR+RINE++R LQ L+P+ K D ++ML+EA+ Y+K LQLQ++++ WM AP+
Sbjct: 283 KRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWM---YAPI 339
Query: 407 MFPGM 411
F GM
Sbjct: 340 AFNGM 344
>TAIR|locus:2079676 [details] [associations]
symbol:AT3G07340 "AT3G07340" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC009853 EMBL:AK175369 EMBL:AK175496
EMBL:AK176563 EMBL:AK176663 EMBL:BT026497 EMBL:AF488595
IPI:IPI00521004 RefSeq:NP_187390.1 UniGene:At.40357
ProteinModelPortal:Q9SRT2 SMR:Q9SRT2 EnsemblPlants:AT3G07340.1
GeneID:819922 KEGG:ath:AT3G07340 GeneFarm:2908 TAIR:At3g07340
eggNOG:NOG283912 InParanoid:Q9SRT2 OMA:MENELFM PhylomeDB:Q9SRT2
ProtClustDB:CLSN2684837 Genevestigator:Q9SRT2 Uniprot:Q9SRT2
Length = 456
Score = 178 (67.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 53/158 (33%), Positives = 81/158 (51%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 396
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 261 RRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEF 320
Query: 397 MWMG-SGMAPLMFPGMQHYMSRXXXXXXXXXLPSVTNPMHFSRVPLVDQSMSMAQAQNRA 455
+ M S + + M +S+ PS N MH +V +D S +
Sbjct: 321 LSMKLSSVNTRLDFNMDALLSKDI-------FPSSNNLMHHQQVLQLDSSAETLLGDHHN 373
Query: 456 VMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQAN 493
Q LNP N + N T + ++ P A+
Sbjct: 374 KNLQ---LNPDISSNNVINPLETSETRSFISHLPTLAH 408
Score = 43 (20.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 20/62 (32%), Positives = 22/62 (35%)
Query: 205 GPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVI 264
G SG+ RKR Q S V SS + D D R S N D K I
Sbjct: 197 GESSGELSRKRKTKSKQN-----SPSAVSSSK--EIEEKEDSDPKRCKKSEENGDKTKSI 249
Query: 265 SP 266
P
Sbjct: 250 DP 251
>TAIR|locus:504954900 [details] [associations]
symbol:AT5G43175 "AT5G43175" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB008267 HOGENOM:HOG000240244 ProtClustDB:CLSN2688032
IPI:IPI00519888 RefSeq:NP_680385.1 UniGene:At.55333
ProteinModelPortal:Q3E7L7 SMR:Q3E7L7 EnsemblPlants:AT5G43175.1
GeneID:834335 KEGG:ath:AT5G43175 TAIR:At5g43175 eggNOG:NOG323547
InParanoid:Q3E7L7 OMA:MENEAFV PhylomeDB:Q3E7L7
Genevestigator:Q3E7L7 Uniprot:Q3E7L7
Length = 223
Score = 161 (61.7 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 37/111 (33%), Positives = 66/111 (59%)
Query: 306 KSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQ 365
+S + +S +A G S +K+ +R R A++ +L R+RR+RIN++++ LQ
Sbjct: 104 QSLSSYNSSDDEKALGLVSNT-SKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQ 162
Query: 366 ELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-----WMGSGMAPLMFPGM 411
L+P+ K D ++ML++A+ Y+K LQLQ++++ WM APL G+
Sbjct: 163 SLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSSEDLWM---YAPLAHNGL 210
>TAIR|locus:2205420 [details] [associations]
symbol:AT1G68920 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AF488584 EMBL:AY128299
EMBL:BT002259 IPI:IPI00536565 IPI:IPI00545990 PIR:G96713
RefSeq:NP_001031255.1 RefSeq:NP_177058.1 RefSeq:NP_849863.2
UniGene:At.28096 ProteinModelPortal:Q9CAA9 SMR:Q9CAA9 STRING:Q9CAA9
EnsemblPlants:AT1G68920.1 EnsemblPlants:AT1G68920.2 GeneID:843225
KEGG:ath:AT1G68920 TAIR:At1g68920 eggNOG:NOG301979
HOGENOM:HOG000238007 InParanoid:Q3E6P7 OMA:MLKGGIF PhylomeDB:Q9CAA9
ProtClustDB:CLSN2682343 Genevestigator:Q9CAA9 Uniprot:Q9CAA9
Length = 486
Score = 176 (67.0 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 54/187 (28%), Positives = 92/187 (49%)
Query: 297 STGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG----SCRRSRAAEVHNLSERR 352
+ GD KR + +S + +G + G + + G RR +A H+L+ER
Sbjct: 263 NNGDE--KRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERV 320
Query: 353 RRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMFPG 410
RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ + M + + P M
Sbjct: 321 RREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFN 380
Query: 411 MQHYMSRXXXXXXXXXLPSVTNPMHFSRV-PLVDQSMSMAQAQNRAVMCQASVLNPVNYQ 469
++ +++ + P + S P + M Q + S L+P+N
Sbjct: 381 LEGLLAKDALQLRAGSSSTTPFPPNMSMAYPPLPHGF-MQQTLSSIGRTITSPLSPMNGG 439
Query: 470 NQMQNSN 476
+ Q +N
Sbjct: 440 FKRQETN 446
>UNIPROTKB|Q5VR96 [details] [associations]
symbol:P0038C05.31-1 "Os06g0275600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008212 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003044 RefSeq:NP_001057380.1 UniGene:Os.32526
EnsemblPlants:LOC_Os06g16400.1 EnsemblPlants:LOC_Os06g16400.2
GeneID:4340749 KEGG:osa:4340749 ProtClustDB:CLSN2697804
Uniprot:Q5VR96
Length = 437
Score = 175 (66.7 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 73/255 (28%), Positives = 115/255 (45%)
Query: 157 SVVPELQRNAMPP----PRFEVHDAAPQNKNLGDLGKLVNFS-QSTAPPKGEL--G--PC 207
S++ L A PP P F A N G+LG ++N P G+ G PC
Sbjct: 76 SLLGMLSAGAPPPFVATPGFVDSTAGFPCYNGGNLGAMINHPFPGIHQPLGDFQNGVEPC 135
Query: 208 SGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDM-SRASSSGLNDDVRKVISP 266
D + G+ + E ++H + + +L M R +G ++ R +S
Sbjct: 136 REIEDIEIEGSKNVSQTGEKQQGDGETTHAVDSS-SKELSMPGRNGGAGHDEGTR--VSC 192
Query: 267 SERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGA 326
S++ K + V S Q D+ R +V S +S + A
Sbjct: 193 SKKRKRSGQDGGVKHAEGGEQLA-TVGSAQKNEDDEKGEPKRSSVASG-KSSGKQIKDNA 250
Query: 327 GN-KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAI 384
G+ K RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I
Sbjct: 251 GSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEII 310
Query: 385 EYLKSLQLQLQVMWM 399
Y++SLQ Q++ + M
Sbjct: 311 NYVQSLQRQVEFLSM 325
>UNIPROTKB|Q2QQ32 [details] [associations]
symbol:LOC_Os12g32400 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
eggNOG:NOG284967 Uniprot:Q2QQ32
Length = 198
Score = 152 (58.6 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 334 SGSCRRSRAAEV-HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 392
S +C+ S +AE + + RR RINE++R LQELIP+ K D ++ML+EAI+Y+K L L
Sbjct: 106 SKACKHSVSAESSQSYYAKNRRQRINERLRILQELIPNGTKVDISTMLEEAIQYVKFLHL 165
Query: 393 QLQV-----MWMGSGMAPLMF 408
Q+++ MWM APL F
Sbjct: 166 QIKLLSSDEMWM---YAPLAF 183
>UNIPROTKB|Q2QML8 [details] [associations]
symbol:LOC_Os12g40730 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 KEGG:dosa:Os12t0599400-00
KEGG:dosa:Os12t0599550-00 Gramene:Q2QML8 HOGENOM:HOG000244163
Uniprot:Q2QML8
Length = 387
Score = 175 (66.7 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 47/142 (33%), Positives = 73/142 (51%)
Query: 294 SKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRR 353
+K T D+S +RK + A + +S+ A ++ ++SG + H RR
Sbjct: 172 NKDETSDDSGERKKKKASSAAGKSKQASPRGCRSSQPYRKSGDSIDELFTKFH-----RR 226
Query: 354 RDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQH 413
R +I E+ R LQ L+P C+K+++AS LD+ I+Y+KSLQ QL+ M + L++P H
Sbjct: 227 RFKITERFRTLQRLVPGCDKSNQASTLDQTIQYMKSLQHQLKAMSVVGSPPALLYPAAVH 286
Query: 414 YMSRXXXXXXXXXLPSVTNPMH 435
S P VT PMH
Sbjct: 287 PQSYMHPPPPP---PPVTMPMH 305
Score = 38 (18.4 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 37 ELVELLWQNG 46
+L EL+WQ G
Sbjct: 52 DLFELMWQGG 61
>UNIPROTKB|Q6ZCV8 [details] [associations]
symbol:P0028A08.20 "Os08g0487700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000145 EMBL:AP004557 RefSeq:NP_001062102.1 UniGene:Os.60678
EnsemblPlants:LOC_Os08g38080.1 GeneID:4345892 KEGG:osa:4345892
eggNOG:NOG275480 Uniprot:Q6ZCV8
Length = 365
Score = 170 (64.9 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 47/138 (34%), Positives = 75/138 (54%)
Query: 309 DAVDSECQSEAAGFESGAGNKTA---QRSG----SCRRSRAAEVHNLSERRRRDRINEKM 361
+ + + A G G G K A Q+ G R+ +A H+L+ER RR++I+E+M
Sbjct: 143 EVIGPPATAAAGGKSKGKGAKDAGEAQKEGYSHVRARKGQATNNHSLAERLRREKISERM 202
Query: 362 RALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMFPGMQHYMSRXX 419
+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++ + M S + P + ++ ++
Sbjct: 203 KLLQDLVPGCSKVTGKALMLDEIINYVQSLQRQVEFLSMKLSAVNPRIDLDIESLVNNSK 262
Query: 420 XXXXXXXLPSVTNPMHFS 437
PS + PM FS
Sbjct: 263 DVLRFPGQPS-SAPMGFS 279
>TAIR|locus:2095198 [details] [associations]
symbol:AT3G23690 "AT3G23690" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
EMBL:AP000377 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AY065441 EMBL:AY096536
EMBL:EU550216 EMBL:EU550217 EMBL:EU550218 EMBL:EU550219
EMBL:EU550220 EMBL:EU550221 EMBL:EU550222 EMBL:EU550223
EMBL:EU550224 EMBL:EU550225 EMBL:EU550226 EMBL:EU550227
EMBL:EU550228 EMBL:EU550229 EMBL:EU550230 EMBL:EU550231
EMBL:EU550232 EMBL:EU550233 EMBL:EU550234 EMBL:EU550235
EMBL:EU550236 EMBL:EU550237 EMBL:EU550238 EMBL:EU550239
EMBL:AF488609 IPI:IPI00545445 RefSeq:NP_189011.2 UniGene:At.6666
ProteinModelPortal:Q9LK48 SMR:Q9LK48 PaxDb:Q9LK48 PRIDE:Q9LK48
EnsemblPlants:AT3G23690.1 GeneID:821950 KEGG:ath:AT3G23690
TAIR:At3g23690 eggNOG:NOG292697 InParanoid:Q9LK48 OMA:MEFNANA
PhylomeDB:Q9LK48 ProtClustDB:CLSN2917952 Genevestigator:Q9LK48
Uniprot:Q9LK48
Length = 371
Score = 170 (64.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 46/153 (30%), Positives = 76/153 (49%)
Query: 250 RASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRD 309
R ++ N RK I PS GK ++T + + S++
Sbjct: 106 RVHTTKSNSRKRKSI-PSGNGKESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKN 164
Query: 310 AVDSECQSEAAGFESGAGNKTAQR--SGSCRRSRAAEVHNLSERRRRDRINEKMRALQEL 367
V+ +C S+ + + + RR +A + H+L+ER RR++I+E+M LQ+L
Sbjct: 165 GVE-KCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDL 223
Query: 368 IPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 399
+P CN+ T KA MLDE I Y++SLQ Q++ + M
Sbjct: 224 VPGCNRITGKAVMLDEIINYVQSLQRQVEFLSM 256
>TAIR|locus:2152551 [details] [associations]
symbol:AT5G48560 "AT5G48560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AB015468 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 eggNOG:NOG283912
ProtClustDB:CLSN2684837 EMBL:AF488610 EMBL:BT002945 EMBL:BT005637
IPI:IPI00543091 RefSeq:NP_199667.1 UniGene:At.43769
ProteinModelPortal:Q9FJL4 SMR:Q9FJL4 IntAct:Q9FJL4 PaxDb:Q9FJL4
PRIDE:Q9FJL4 EnsemblPlants:AT5G48560.1 GeneID:834912
KEGG:ath:AT5G48560 TAIR:At5g48560 InParanoid:Q9FJL4 OMA:SASCYAT
PhylomeDB:Q9FJL4 Genevestigator:Q9FJL4 Uniprot:Q9FJL4
Length = 498
Score = 172 (65.6 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 42/110 (38%), Positives = 65/110 (59%)
Query: 296 QSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS-----CRRSRAAEVHNLSE 350
+S+ + KR+ + D E + E G +S K + RR +A + H+L+E
Sbjct: 258 KSSEEKGGKRRREEEDDEEEEGEGEGNKSN-NTKPPEPPKDYIHVRARRGQATDSHSLAE 316
Query: 351 RRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 399
R RR++I E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 317 RVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSM 366
>TAIR|locus:505006688 [details] [associations]
symbol:AT5G50915 "AT5G50915" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0009739 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB017063 EMBL:AF428350 EMBL:AY057549 EMBL:AY113059
EMBL:AY087602 IPI:IPI00536793 RefSeq:NP_568745.1 RefSeq:NP_851163.1
UniGene:At.23601 ProteinModelPortal:Q93W88 SMR:Q93W88
EnsemblPlants:AT5G50915.1 EnsemblPlants:AT5G50915.2 GeneID:835164
KEGG:ath:AT5G50915 TAIR:At5g50915 eggNOG:NOG262059
HOGENOM:HOG000242938 InParanoid:Q93W88 OMA:ISERMRT PhylomeDB:Q93W88
ProtClustDB:CLSN2689980 Genevestigator:Q93W88 Uniprot:Q93W88
Length = 286
Score = 166 (63.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 33/73 (45%), Positives = 55/73 (75%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 396
RR +A + H+L+ER RR++I+E+MR LQ L+P C+K T KA MLDE I Y+++LQ Q++
Sbjct: 139 RRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEF 198
Query: 397 MWMG-SGMAPLMF 408
+ M + ++P+++
Sbjct: 199 LSMKLTSISPVVY 211
>TAIR|locus:2115200 [details] [associations]
symbol:BEE2 "AT4G36540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
PROSITE:PS00678 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161589 EMBL:Z99708
EMBL:AF488591 EMBL:AF370231 EMBL:AY059122 EMBL:AY054588
EMBL:BT000388 EMBL:AY084997 EMBL:AY138254 IPI:IPI00540245
IPI:IPI00548266 PIR:D85431 RefSeq:NP_195372.1 RefSeq:NP_849508.1
UniGene:At.25403 ProteinModelPortal:Q93VJ4 SMR:Q93VJ4 IntAct:Q93VJ4
PRIDE:Q93VJ4 EnsemblPlants:AT4G36540.1 GeneID:829806
KEGG:ath:AT4G36540 TAIR:At4g36540 eggNOG:NOG240651
InParanoid:Q93VJ4 OMA:ELECHID PhylomeDB:Q93VJ4
ProtClustDB:CLSN2685556 Genevestigator:Q93VJ4 Uniprot:Q93VJ4
Length = 304
Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 32/63 (50%), Positives = 48/63 (76%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 396
RR A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 144 RRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEF 203
Query: 397 MWM 399
+ M
Sbjct: 204 LSM 206
>UNIPROTKB|Q84LH4 [details] [associations]
symbol:OSJNBb0011H13.2 "Putative Helix-loop-helix
DNA-binding domain containing protein" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 EMBL:AP008209
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140 EMBL:AC120983
EMBL:AC135956 RefSeq:NP_001051150.1 UniGene:Os.24540
EnsemblPlants:LOC_Os03g51910.1 GeneID:4333984 KEGG:osa:4333984
eggNOG:NOG262475 OMA:SKQMMLS ProtClustDB:CLSN2694257 Uniprot:Q84LH4
Length = 327
Score = 167 (63.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 53/178 (29%), Positives = 87/178 (48%)
Query: 223 EVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTXX 282
E RE + + C + Q++ D G++D + +++PS + + + T
Sbjct: 50 EDREGLYRSPNGTFCQNIQLSDDHSSGAKRRKGIDDHIA-LLNPSASSRIQNVGDQQTEV 108
Query: 283 XXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRA 342
R S + DN +KS + S+ S G G K +R +A
Sbjct: 109 SSQQ----ERISMEE--DN---QKSCSKMQSKEDSS-----DGDGTKEDYVHVRAKRGQA 154
Query: 343 AEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 399
H+L+ER RR +I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++ + M
Sbjct: 155 TNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSM 212
>UNIPROTKB|Q6AV35 [details] [associations]
symbol:OSJNBa0063J18.7 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140
EMBL:AC107206 RefSeq:NP_001050667.1 UniGene:Os.79759
EnsemblPlants:LOC_Os03g42100.1 GeneID:4333457 KEGG:osa:4333457
eggNOG:NOG300710 OMA:CTSENDS ProtClustDB:CLSN2694086 Uniprot:Q6AV35
Length = 310
Score = 166 (63.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 48/129 (37%), Positives = 77/129 (59%)
Query: 292 RTSKQSTG-DNSLKRKSRDAVDSECQSE--AAGF-ESGAGNKTAQRSGSCRRSRAAEVHN 347
+ + Q G D S+ +R ++ S C SE + G ES K+ ++ S RS A + +
Sbjct: 176 KKAAQCEGEDGSIAVTNRQSL-SCCTSENDSIGSQESPVAAKSNGKAQSGHRS-ATDPQS 233
Query: 348 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSG 402
L R+RR+RINE+++ LQ L+P+ K D ++ML+EA+ Y+K LQLQ+++ MWM
Sbjct: 234 LYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKFLQLQIKLLSSDEMWM--- 290
Query: 403 MAPLMFPGM 411
AP+ + GM
Sbjct: 291 YAPIAYNGM 299
>TAIR|locus:2172209 [details] [associations]
symbol:AT5G62610 "AT5G62610" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 EMBL:AB020751 HOGENOM:HOG000238007 EMBL:AY072104
EMBL:AY123023 EMBL:AY084578 EMBL:AF488611 IPI:IPI00518025
RefSeq:NP_201067.1 UniGene:At.24534 UniGene:At.24682
ProteinModelPortal:Q9LV17 SMR:Q9LV17 PaxDb:Q9LV17 PRIDE:Q9LV17
EnsemblPlants:AT5G62610.1 GeneID:836382 KEGG:ath:AT5G62610
GeneFarm:2935 TAIR:At5g62610 eggNOG:NOG269855 InParanoid:Q9LV17
OMA:DDSSKMV PhylomeDB:Q9LV17 ProtClustDB:CLSN2916786
Genevestigator:Q9LV17 Uniprot:Q9LV17
Length = 281
Score = 163 (62.4 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 33/63 (52%), Positives = 48/63 (76%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 396
RR +A + H+L+ER RR++I+EKM ALQ++IP CNK KA +LDE I Y++SLQ Q++
Sbjct: 156 RRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEF 215
Query: 397 MWM 399
+ M
Sbjct: 216 LSM 218
>TAIR|locus:2028804 [details] [associations]
symbol:CIB5 "AT1G26260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009911 "positive regulation of flower development"
evidence=IGI] [GO:0048513 "organ development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC079829 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238007
EMBL:AK117355 EMBL:BT005334 EMBL:AJ630483 EMBL:AY568655
EMBL:AF488608 IPI:IPI00529982 IPI:IPI00547855 PIR:H86388
RefSeq:NP_001031093.1 RefSeq:NP_173950.1 RefSeq:NP_973913.1
UniGene:At.41276 ProteinModelPortal:Q9C670 SMR:Q9C670 IntAct:Q9C670
STRING:Q9C670 EnsemblPlants:AT1G26260.1 EnsemblPlants:AT1G26260.2
GeneID:839167 KEGG:ath:AT1G26260 TAIR:At1g26260 eggNOG:NOG284637
InParanoid:Q9C670 OMA:ETHGYES PhylomeDB:Q9C670
ProtClustDB:CLSN2682645 Genevestigator:Q9C670 Uniprot:Q9C670
Length = 390
Score = 167 (63.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 41/139 (29%), Positives = 70/139 (50%)
Query: 292 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 351
R K + K+K + S + + K RR +A H+L+ER
Sbjct: 180 RIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAER 239
Query: 352 RRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMFP 409
RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++ + M S + P++
Sbjct: 240 VRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDF 299
Query: 410 GMQHYMSRXXXXXXXXXLP 428
++ +++ P
Sbjct: 300 NLESLLAKDALQSSAPTFP 318
>TAIR|locus:2139484 [details] [associations]
symbol:CIB1 "AT4G34530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0009911 "positive regulation of flower development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161585 EMBL:AL023094
HOGENOM:HOG000238007 EMBL:AF488596 EMBL:AK117846 EMBL:AY120741
EMBL:BT005313 IPI:IPI00519970 PIR:T05273 RefSeq:NP_195179.2
UniGene:At.48937 ProteinModelPortal:Q8GY61 SMR:Q8GY61
DIP:DIP-59356N IntAct:Q8GY61 PRIDE:Q8GY61 EnsemblPlants:AT4G34530.1
GeneID:829604 KEGG:ath:AT4G34530 TAIR:At4g34530 eggNOG:NOG251551
InParanoid:Q8GY61 OMA:SGYSHEM PhylomeDB:Q8GY61
ProtClustDB:CLSN2915063 Genevestigator:Q8GY61 Uniprot:Q8GY61
Length = 335
Score = 165 (63.1 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 40/112 (35%), Positives = 67/112 (59%)
Query: 291 NRTSKQSTGDN-SLKRKSRDAVDSECQ-SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNL 348
++ ++Q+ G S+K+ A E S + + KT RR +A + H++
Sbjct: 126 SKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSI 185
Query: 349 SERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 399
+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++ + M
Sbjct: 186 AERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSM 237
>TAIR|locus:2199307 [details] [associations]
symbol:AT1G68240 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0009686 "gibberellin biosynthetic process" evidence=RCA]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0016114 "terpenoid biosynthetic process"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC016447
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AJ577585 EMBL:AY735551
EMBL:AY735552 EMBL:AY924719 IPI:IPI00528459 IPI:IPI00657054
IPI:IPI00919318 PIR:H96705 RefSeq:NP_001031251.1 RefSeq:NP_176991.2
UniGene:At.35550 ProteinModelPortal:Q5XVH0 SMR:Q5XVH0
EnsemblPlants:AT1G68240.1 GeneID:843153 KEGG:ath:AT1G68240
TAIR:At1g68240 eggNOG:NOG270610 HOGENOM:HOG000095221 OMA:EGTHEEE
PhylomeDB:Q5XVH0 ProtClustDB:CLSN2681409 Genevestigator:Q5XVH0
Uniprot:Q5XVH0
Length = 185
Score = 144 (55.7 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIP-HCNKTDKASMLDEAIEYLKSLQLQLQV 396
+R R+ E + E++RR I +K+ LQ L+P HC K D AS L+ IEY+KSL+ Q+ V
Sbjct: 64 KRQRSMEYRMMMEKKRRKEIKDKVDILQGLMPNHCTKPDLASKLENIIEYIKSLKYQVDV 123
Query: 397 MWMGSGMAPLMFP 409
M M P+ P
Sbjct: 124 MSMAYTTTPVYTP 136
>TAIR|locus:2199221 [details] [associations]
symbol:RSL4 "AT1G27740" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048766 "root hair
initiation" evidence=IMP] [GO:0048765 "root hair cell
differentiation" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045893 GO:GO:0009733
GO:GO:0003677 GO:GO:0016049 GO:GO:0003700 GO:GO:0006351
EMBL:AC012375 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY085436
IPI:IPI00523669 PIR:B86402 RefSeq:NP_564293.1 UniGene:At.41015
ProteinModelPortal:Q8LEG1 SMR:Q8LEG1 EnsemblPlants:AT1G27740.1
GeneID:839667 KEGG:ath:AT1G27740 TAIR:At1g27740 eggNOG:NOG244031
HOGENOM:HOG000240244 InParanoid:Q8LEG1 OMA:DESNTNW PhylomeDB:Q8LEG1
ProtClustDB:CLSN2688032 Genevestigator:Q8LEG1 GO:GO:0048766
Uniprot:Q8LEG1
Length = 258
Score = 159 (61.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 44/156 (28%), Positives = 82/156 (52%)
Query: 261 RKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSEAA 320
RK++ KT + VT R S +S N++ + + VD + S ++
Sbjct: 98 RKLLDVENLCKTNS-NCDVTRQELAKSKKKQRVSSES---NTVDESNTNWVDGQSLSNSS 153
Query: 321 GFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 380
E + ++ + + + A + +L R+RR++INE+++ LQ L+P+ K D ++ML
Sbjct: 154 DDEKASVTSVKGKTRATKGT-ATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTML 212
Query: 381 DEAIEYLKSLQLQLQVM-----WMGSGMAPLMFPGM 411
+EA+ Y+K LQLQ++++ WM APL + G+
Sbjct: 213 EEAVHYVKFLQLQIKLLSSDDLWM---YAPLAYNGL 245
>UNIPROTKB|Q69JJ6 [details] [associations]
symbol:OSJNBa0026C08.22 "TA1 protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008215
ProtClustDB:CLSN2697804 EMBL:AP006169 EMBL:HQ858863 EMBL:AK121418
RefSeq:NP_001063455.1 UniGene:Os.38400
EnsemblPlants:LOC_Os09g29830.3 GeneID:4347355 KEGG:osa:4347355
Uniprot:Q69JJ6
Length = 428
Score = 164 (62.8 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 39/109 (35%), Positives = 63/109 (57%)
Query: 293 TSKQSTGDNSLKRKSRDAVDSECQSEAAGF-ESGAGNKTAQRSGSCRRSRAAEVHNLSER 351
++ +S +S A + +S+ G E+ K RR +A H+L+ER
Sbjct: 205 SANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHSLAER 264
Query: 352 RRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 399
RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++ + M
Sbjct: 265 LRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 313
>UNIPROTKB|Q84QW1 [details] [associations]
symbol:OJ1191_A10.109 "BHLH transcription
factor(GBOF-1)-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:AP008214
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003888
RefSeq:NP_001062289.1 UniGene:Os.10830
EnsemblPlants:LOC_Os08g41320.1 GeneID:4346087 KEGG:osa:4346087
eggNOG:NOG320619 OMA:ERISQRM ProtClustDB:CLSN2697487 Uniprot:Q84QW1
Length = 405
Score = 165 (63.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 396
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 207 RRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEF 266
Query: 397 MWMG-SGMAPLMFPGM 411
+ M + + PL F +
Sbjct: 267 LSMKLATVNPLDFSNL 282
Score = 39 (18.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 17/67 (25%), Positives = 26/67 (38%)
Query: 429 SVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFH 488
+ NP+ FS +P + Q M QA C S + + ++ F EQ + F
Sbjct: 272 ATVNPLDFSNLPTLLQK-DMFQA------CGPSASSVFSLESSNSAFRFAEQGDVFQQFA 324
Query: 489 PMQANSQ 495
SQ
Sbjct: 325 QNSMESQ 331
>TAIR|locus:2027809 [details] [associations]
symbol:BEE3 "AT1G73830" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000090950 ProtClustDB:CLSN2680013 EMBL:AF488585
EMBL:AC012679 EMBL:AK118781 EMBL:BT006055 IPI:IPI00541876
RefSeq:NP_177524.2 UniGene:At.34949 ProteinModelPortal:Q8GWK7
SMR:Q8GWK7 EnsemblPlants:AT1G73830.1 GeneID:843719
KEGG:ath:AT1G73830 TAIR:At1g73830 eggNOG:NOG264296
InParanoid:Q8GWK7 OMA:LENNFHQ PhylomeDB:Q8GWK7
Genevestigator:Q8GWK7 Uniprot:Q8GWK7
Length = 261
Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 39/116 (33%), Positives = 64/116 (55%)
Query: 293 TSKQSTGDNSLKRKSRDA-----VDSECQSEAAGFESGAGNKTAQRSG---SCRRSRAAE 344
TS+ S D +L S + ++ S G S + +R RR +A +
Sbjct: 97 TSENSVSDQTLSTSSAQVSINGNISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATD 156
Query: 345 VHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM 399
H+++ER RR +INE+++ LQ+++P C KT A+MLDE I Y++SLQ Q++ + M
Sbjct: 157 SHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSM 212
>TAIR|locus:2053766 [details] [associations]
symbol:AT2G42300 "AT2G42300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC005956 EMBL:AY065411 EMBL:AY096521 EMBL:AK175584
EMBL:AK176019 EMBL:AK176634 EMBL:AF488583 IPI:IPI00532521
PIR:C84852 RefSeq:NP_850368.1 UniGene:At.28495
ProteinModelPortal:Q8VZ02 SMR:Q8VZ02 EnsemblPlants:AT2G42300.1
GeneID:818831 KEGG:ath:AT2G42300 TAIR:At2g42300 eggNOG:NOG301522
HOGENOM:HOG000037005 InParanoid:Q8VZ02 OMA:PEWGREE PhylomeDB:Q8VZ02
ProtClustDB:CLSN2680198 Genevestigator:Q8VZ02 Uniprot:Q8VZ02
Length = 327
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 296 QSTGDNSLKRKSRDA-VDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRR 354
Q+ +S KRK R+ V S + + ES +K RR +A + H+L+ER RR
Sbjct: 148 QNQSYSSGKRKEREKKVKSSTKKNKSSVES---DKLPYVHVRARRGQATDNHSLAERARR 204
Query: 355 DRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQVMWM 399
++IN +M+ LQEL+P C+K A +LDE I ++++LQ Q++++ M
Sbjct: 205 EKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVEMLSM 250
>TAIR|locus:2014144 [details] [associations]
symbol:BEE1 "BR enhanced expression 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC013354
EMBL:AY138253 EMBL:AF488579 EMBL:AK117269 EMBL:BT005268
IPI:IPI00539846 RefSeq:NP_173276.2 UniGene:At.46141
ProteinModelPortal:Q8GZ13 SMR:Q8GZ13 IntAct:Q8GZ13
EnsemblPlants:AT1G18400.1 GeneID:838421 KEGG:ath:AT1G18400
TAIR:At1g18400 eggNOG:euNOG17991 HOGENOM:HOG000090950
InParanoid:Q8GZ13 PhylomeDB:Q8GZ13 ProtClustDB:CLSN2680013
Genevestigator:Q8GZ13 Uniprot:Q8GZ13
Length = 260
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 48/150 (32%), Positives = 79/150 (52%)
Query: 251 ASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDA 310
++SS L+ D ++ E K + + PT++ + T+ +T SL+R R
Sbjct: 75 STSSFLHSD-HNIVD--ETKKRKALLPTLSSSETSGVS--DNTNVIATETGSLRRGKRLK 129
Query: 311 VDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPH 370
E + E E + A RR +A + H+L+ER RR +INE++R LQ+++P
Sbjct: 130 KKKEEEDEK---EREVVHVRA------RRGQATDSHSLAERVRRGKINERLRCLQDMVPG 180
Query: 371 CNKT-DKASMLDEAIEYLKSLQLQLQVMWM 399
C K A+MLDE I Y++SLQ Q++ + M
Sbjct: 181 CYKAMGMATMLDEIINYVQSLQNQVEFLSM 210
>UNIPROTKB|Q6ZFY4 [details] [associations]
symbol:OJ1311_H06.19 "BHLH protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003983
EMBL:AP004161 Uniprot:Q6ZFY4
Length = 298
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 305 RKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRAL 364
+K A S+ S + + GAG K A ++ S + + +L+ + RR+RI+E++R L
Sbjct: 169 QKRAHAESSQAMSPSKK-QCGAGRK-AGKAKSAPTTPTKDPQSLAAKNRRERISERLRIL 226
Query: 365 QELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
QEL+P+ K D +ML++AI Y+K LQLQ++V+
Sbjct: 227 QELVPNGTKVDLVTMLEKAISYVKFLQLQVKVL 259
>TAIR|locus:2032990 [details] [associations]
symbol:CES "AT1G25330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:2000488 "positive regulation of brassinosteroid biosynthetic
process" evidence=IMP] [GO:0048441 "petal development"
evidence=RCA] [GO:0048443 "stamen development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG264296 EMBL:AC079374 EMBL:DQ446289 EMBL:DQ652859
EMBL:AK175757 EMBL:AY088885 EMBL:AF488607 IPI:IPI00519962
PIR:B86383 PIR:D86381 RefSeq:NP_564229.1 UniGene:At.48236
UniGene:At.63980 ProteinModelPortal:A4D998 SMR:A4D998
EnsemblPlants:AT1G25330.1 GeneID:839117 KEGG:ath:AT1G25330
GeneFarm:2907 TAIR:At1g25330 InParanoid:A4D998 PhylomeDB:A4D998
Genevestigator:A4D998 GO:GO:2000488 Uniprot:A4D998
Length = 223
Score = 144 (55.7 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 396
+R +A + H+L+ER RR++INE+++ LQ+L+P C K A MLD I+Y++SLQ Q++
Sbjct: 107 KRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEF 166
Query: 397 MWM 399
+ M
Sbjct: 167 LSM 169
Score = 37 (18.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 41 LLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGS 78
+L+ NG +V ++ + P+L H R+ + GS
Sbjct: 40 MLFSNGALVDANHNNSHFFPNLLHGNTRRKGNKEESGS 77
>UNIPROTKB|Q8S490 [details] [associations]
symbol:rau1 "Transcription factor RAU1" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF465824
ProteinModelPortal:Q8S490 Gramene:Q8S490 Genevestigator:Q8S490
Uniprot:Q8S490
Length = 150
Score = 131 (51.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/59 (45%), Positives = 43/59 (72%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 395
+R A +++ER RR RI+E++R LQEL+P+ +K T+ A MLD A++Y+K LQ Q++
Sbjct: 72 KRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQVK 130
>TAIR|locus:2012393 [details] [associations]
symbol:AT1G68810 "AT1G68810" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC011914 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AY072161 EMBL:AY122983
IPI:IPI00517468 PIR:H96712 RefSeq:NP_564944.1 UniGene:At.46879
HSSP:P22415 ProteinModelPortal:Q9S7Y1 SMR:Q9S7Y1
EnsemblPlants:AT1G68810.1 GeneID:843213 KEGG:ath:AT1G68810
TAIR:At1g68810 eggNOG:NOG328059 HOGENOM:HOG000243133
InParanoid:Q9S7Y1 OMA:FVIKASL PhylomeDB:Q9S7Y1
ProtClustDB:CLSN2689090 Genevestigator:Q9S7Y1 Uniprot:Q9S7Y1
Length = 368
Score = 147 (56.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 321 GFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 380
G ++ G TAQ + A++ H+ +ERRRR+RIN + L+ ++P+ KTDKAS+L
Sbjct: 153 GLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLL 212
Query: 381 DEAIEYLKSLQLQLQVM 397
E I+++K L+ + V+
Sbjct: 213 AEVIQHVKELKRETSVI 229
Score = 47 (21.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 63 NHNEPRQVQKQTLRGSGSCGNSSNLI-QDDETVSWIHCPIEDSFEKDF 109
+H++P Q +TL SG+ G+ + QD + W P S + F
Sbjct: 41 HHHDPSQ--SETLGASGNVGSGFTIFSQDSVSPIW-SLPPPTSIQPPF 85
>UNIPROTKB|Q5N802 [details] [associations]
symbol:P0004D12.24 "BHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008207 eggNOG:NOG283912 EMBL:AP003433 EMBL:HQ858864
EMBL:AK101063 RefSeq:NP_001045188.1 UniGene:Os.5763
EnsemblPlants:LOC_Os01g68700.2 GeneID:4324327 KEGG:osa:4324327
ProtClustDB:CLSN2692207 Uniprot:Q5N802
Length = 481
Score = 160 (61.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 50/154 (32%), Positives = 82/154 (53%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 396
RR A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 280 RRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEF 339
Query: 397 MWMG-SGMAP-LMFPGMQHYMSRXXXXXXXXXLPSVTNPMHFSRVPLVDQSMSMAQAQNR 454
+ M + + P L F + + +++ L S P+ S PL ++ Q Q
Sbjct: 340 LSMKLATVNPQLDFNNLPNLLAKDMHQSCSP-LQSSHFPLETSGAPL--PYINQPQ-QGN 395
Query: 455 AVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFH 488
+ C + N ++ Q M + + R MG H
Sbjct: 396 PLGC--GLTNGMDNQGSMHPLD--PAFCRPMGSH 425
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 144 GAVTSSQHPNVNHSVVPELQRNAMPP 169
G S P +N S++ + A PP
Sbjct: 65 GGTPLSSPPKLNLSMMGQFHHYAAPP 90
>UNIPROTKB|Q8W5G3 [details] [associations]
symbol:OSJNBa0002J24.23 "Helix-loop-helix DNA-binding
domain containing protein, expressed" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:CM000140 HOGENOM:HOG000240244 EMBL:AC090713
EnsemblPlants:LOC_Os03g55550.1 eggNOG:NOG237829 OMA:WIWERRR
Uniprot:Q8W5G3
Length = 310
Score = 146 (56.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 42/106 (39%), Positives = 59/106 (55%)
Query: 291 NRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSE 350
N+ S QS G S + V+ AG G K R RRS A +L
Sbjct: 175 NQESMQS-GSCSDNESNCSQVNRRKVDRVAG---GGNGKVPAR----RRS-ATIAQSLYA 225
Query: 351 RRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 396
RRRR+RIN ++R LQ+L+P+ K D ++ML+EA+ Y+K LQLQ++V
Sbjct: 226 RRRRERINGRLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKV 271
>TAIR|locus:2062235 [details] [associations]
symbol:NAI1 "AT2G22770" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0007029 "endoplasmic reticulum organization" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000240300 ProtClustDB:CLSN2690866
EMBL:AF488564 EMBL:AK176248 IPI:IPI00531737 PIR:F84616
RefSeq:NP_850031.2 UniGene:At.43434 ProteinModelPortal:Q8S3F1
SMR:Q8S3F1 STRING:Q8S3F1 PRIDE:Q8S3F1 EnsemblPlants:AT2G22770.1
GeneID:816807 KEGG:ath:AT2G22770 TAIR:At2g22770 eggNOG:NOG310015
InParanoid:Q8S3F1 OMA:TDEYLID PhylomeDB:Q8S3F1
Genevestigator:Q8S3F1 Uniprot:Q8S3F1
Length = 320
Score = 144 (55.7 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 37/127 (29%), Positives = 64/127 (50%)
Query: 266 PSERGKTETIEPTVTXXXXXXXXXFNRTSKQ-STGDNSLKRKSRDAVDSECQSEAAGFES 324
P+++ KT + + +RTS+ S G K + + + +
Sbjct: 52 PTKQMKTNNNMNSTSSSPSSSSSSGSRTSQVISFGSPDTKTNPVETSLNFSNQVSMDQKV 111
Query: 325 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 384
G+ K +G R + H L+ER+RR ++NE++ AL L+P KTDKA++L++AI
Sbjct: 112 GSKRKDCVNNGGRREPHLLKEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAI 171
Query: 385 EYLKSLQ 391
++LK LQ
Sbjct: 172 KHLKQLQ 178
>UNIPROTKB|Q651K2 [details] [associations]
symbol:B1089G05.30 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CM000143 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005967 EnsemblPlants:LOC_Os06g30090.1 Uniprot:Q651K2
Length = 294
Score = 143 (55.4 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 27/60 (45%), Positives = 43/60 (71%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
+R+ E + + + RR+RI+E++RALQEL+P K D +MLD AI Y+K +Q+QL+V+
Sbjct: 192 QRANNKETQSSAAKSRRERISERLRALQELVPSGGKVDMVTMLDRAISYVKFMQMQLRVL 251
>UNIPROTKB|Q336P5 [details] [associations]
symbol:Os10g0575000 "Os10g0575000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 eggNOG:NOG295658 KO:K13422 RefSeq:NP_001065478.1
UniGene:Os.100484 STRING:Q336P5 GeneID:4349484 KEGG:osa:4349484
ProtClustDB:CLSN2698296 Uniprot:Q336P5
Length = 699
Score = 149 (57.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 58/267 (21%), Positives = 115/267 (43%)
Query: 146 VTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQ------STAP 199
+T + P+V H+ P + A PP R + + Q + G + +NFS + AP
Sbjct: 315 LTENPSPSV-HAPTPS--QPAAPPQRQQQQQQSSQAQQ-GPFRRELNFSDFASNGGAAAP 370
Query: 200 P--KGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLN 257
P K E G + SG + ++ ++ GS + ++ A++ +
Sbjct: 371 PFFKPETGEILNFGNDSSSGRRNPSPAPPAATASLTTAP-GSLFSQHTPTLTAAANDAKS 429
Query: 258 DDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQ- 316
++ ++ + + R P T T++ STG + + D D E
Sbjct: 430 NNQKRSMEATSRASNTNNHPAATANEGMLSFSSAPTTRPSTGTGAPAKSESDHSDLEASV 489
Query: 317 -----SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNL-SERRRRDRINEKMRALQELIPH 370
S A + +R R ++++ +ER+RR+++N++ AL+ ++P+
Sbjct: 490 REVESSRVVAPPPEAEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPN 549
Query: 371 CNKTDKASMLDEAIEYLKSLQLQLQVM 397
+K DKAS+L +AI Y+ L+ +L +
Sbjct: 550 VSKMDKASLLGDAISYINELRGKLTAL 576
>TAIR|locus:2008693 [details] [associations]
symbol:FBH1 "AT1G35460" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AF488612 EMBL:AC023064 EMBL:AF411791 EMBL:AY093794
IPI:IPI00538359 PIR:F86475 RefSeq:NP_174776.1 UniGene:At.18017
ProteinModelPortal:Q9C8P8 SMR:Q9C8P8 PRIDE:Q9C8P8
EnsemblPlants:AT1G35460.1 GeneID:840438 KEGG:ath:AT1G35460
TAIR:At1g35460 eggNOG:NOG263612 HOGENOM:HOG000095218
InParanoid:Q9C8P8 OMA:NLCLTEL PhylomeDB:Q9C8P8
ProtClustDB:CLSN2679906 Genevestigator:Q9C8P8 Uniprot:Q9C8P8
Length = 259
Score = 140 (54.3 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 28/59 (47%), Positives = 45/59 (76%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 395
+R A +++ER RR RI++++R LQEL+P+ +K T+ A ML+EA+EY+K+LQ Q+Q
Sbjct: 184 KRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQ 242
>UNIPROTKB|Q6ZA99 [details] [associations]
symbol:P0431A03.9 "Os08g0432800 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:AP008214 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP004666 EMBL:AK109616 RefSeq:NP_001061870.1
UniGene:Os.56209 EnsemblPlants:LOC_Os08g33590.1 GeneID:4345648
KEGG:osa:4345648 eggNOG:NOG311977 OMA:TSAMMED
ProtClustDB:CLSN2697339 Uniprot:Q6ZA99
Length = 345
Score = 143 (55.4 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 327 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 386
G TA+ + A+ H+ +ERRRR RIN + L+ L+P+ KTDKAS+L E IE+
Sbjct: 106 GRMTAKEIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEH 165
Query: 387 LKSLQLQLQVMWMGSGMA 404
+K L+ Q M M G A
Sbjct: 166 VKELKRQTSAM-MEDGAA 182
>TAIR|locus:2144791 [details] [associations]
symbol:HEC3 "AT5G09750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB020752
EMBL:AL353994 GO:GO:0048462 GO:GO:0010500 IPI:IPI00522404
PIR:T49923 RefSeq:NP_196537.1 UniGene:At.65500
ProteinModelPortal:Q9LXD8 SMR:Q9LXD8 IntAct:Q9LXD8 STRING:Q9LXD8
EnsemblPlants:AT5G09750.1 GeneID:830835 KEGG:ath:AT5G09750
TAIR:At5g09750 eggNOG:NOG238444 HOGENOM:HOG000210013
InParanoid:Q9LXD8 OMA:NDPIGMA ProtClustDB:CLSN2916890
Genevestigator:Q9LXD8 Uniprot:Q9LXD8
Length = 224
Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 347 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 405
+++ R RR+RI+E++R LQ L+P K D ASMLDEAI Y+K L+ Q++++ +G P
Sbjct: 131 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTP 189
>UNIPROTKB|Q84LF9 [details] [associations]
symbol:RERJ1 "Transcription Factor" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P01106 EMBL:AB040744
ProteinModelPortal:Q84LF9 Gramene:Q84LF9 Genevestigator:Q84LF9
Uniprot:Q84LF9
Length = 310
Score = 140 (54.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/110 (35%), Positives = 56/110 (50%)
Query: 291 NRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHN--- 347
N S G +S + AV + + AG SG G T G A N
Sbjct: 38 NYESSSPDGSHSSSAPAPAAVGGDAAAAVAG--SGGGMTTMMMGGGGGGGDDAGGANKNI 95
Query: 348 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
L ER RR ++NEK+ AL+ ++P+ K DKAS++ +AIEY++ LQ + Q M
Sbjct: 96 LMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQM 145
>UNIPROTKB|Q7XT55 [details] [associations]
symbol:OSJNBa0084K20.3 "OSJNBa0076N16.1 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000141 EMBL:AL606613 EMBL:AL731617 Uniprot:Q7XT55
Length = 218
Score = 134 (52.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 318 EAAGFESGAGNKTAQRSGSCRRSRAAEVH--NLSERRRRDRINEKMRALQELIPHCNK-T 374
E AG E + Q R R H +++ER RR RI+EK+R LQ L+P+ +K T
Sbjct: 115 EMAGVEKYLQMQHDQVPFRVRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQT 174
Query: 375 DKASMLDEAIEYLKSLQLQLQVM 397
+ MLD A++++K LQ QLQ +
Sbjct: 175 STSDMLDLAVDHIKGLQSQLQTL 197
>UNIPROTKB|Q657A4 [details] [associations]
symbol:P0022F12.30 "Regulatory protein B-Peru-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP002908 EMBL:AP003310 EnsemblPlants:LOC_Os01g39580.1
Uniprot:Q657A4
Length = 370
Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 325 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 384
G G + +GSC + + H +SERRRR+++NE L+ L+P +K DKAS+L E I
Sbjct: 172 GGGAWMNRAAGSC----SIKNHVMSERRRREKLNEMFLILKSLVPSIDKVDKASILSETI 227
Query: 385 EYLKSLQLQLQVMWMG 400
YLK L+ ++Q + G
Sbjct: 228 AYLKELERRVQELESG 243
>TAIR|locus:2126856 [details] [associations]
symbol:IND "AT4G00120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010197 "polar nucleus fusion" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161471
GO:GO:0010197 EMBL:AF069299 EMBL:BT029443 EMBL:AF488578
IPI:IPI00532644 PIR:T01340 RefSeq:NP_191923.1 UniGene:At.34598
ProteinModelPortal:O81313 SMR:O81313 IntAct:O81313 STRING:O81313
PRIDE:O81313 EnsemblPlants:AT4G00120.1 GeneID:827911
KEGG:ath:AT4G00120 TAIR:At4g00120 eggNOG:NOG274244
HOGENOM:HOG000113070 InParanoid:O81313 OMA:DWNKAND PhylomeDB:O81313
ProtClustDB:CLSN2916160 Genevestigator:O81313 Uniprot:O81313
Length = 198
Score = 131 (51.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 351 RRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM-APLMFP 409
RRRR+RI+EK+R L+ ++P K D ASMLDEAI Y K L+ Q++++ S + AP+ P
Sbjct: 128 RRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQPHSQIGAPMANP 187
Query: 410 GMQHY 414
Y
Sbjct: 188 SYLCY 192
>UNIPROTKB|Q6Z339 [details] [associations]
symbol:B1121A12.20 "Os02g0726700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
EMBL:AP008208 EMBL:AP005284 RefSeq:NP_001047993.1 UniGene:Os.52592
GeneID:4330593 KEGG:osa:4330593 ProtClustDB:CLSN2919237
Uniprot:Q6Z339
Length = 344
Score = 139 (54.0 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 318 EAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDK 376
EA E + +A + S RS+ H+ +E+RRR +IN+++ L+EL+PH + K DK
Sbjct: 126 EATRAEGRSSASSADQGPSTPRSK----HSATEQRRRTKINDRLEILRELLPHTDQKRDK 181
Query: 377 ASMLDEAIEYLKSLQLQLQ 395
AS L E IEY++ LQ ++Q
Sbjct: 182 ASFLSEVIEYIRFLQEKVQ 200
>TAIR|locus:2062230 [details] [associations]
symbol:AT2G22760 "AT2G22760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
EMBL:AF488563 EMBL:DQ446550 EMBL:DQ653016 IPI:IPI00530407
PIR:E84616 RefSeq:NP_179861.2 UniGene:At.39393
ProteinModelPortal:Q1PF16 SMR:Q1PF16 IntAct:Q1PF16 PRIDE:Q1PF16
EnsemblPlants:AT2G22760.1 GeneID:816806 KEGG:ath:AT2G22760
TAIR:At2g22760 eggNOG:NOG292366 InParanoid:Q1PF16 OMA:GCMINIL
PhylomeDB:Q1PF16 ProtClustDB:CLSN2690866 Genevestigator:Q1PF16
Uniprot:Q1PF16
Length = 295
Score = 137 (53.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 325 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 384
G G K S R A+ H L+ER+RR++++EK AL L+P K DK ++LD+AI
Sbjct: 99 GRGTKRKTCSHGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAI 158
Query: 385 EYLKSLQLQLQVM 397
+K LQ QL+ +
Sbjct: 159 SRMKQLQEQLRTL 171
>TAIR|locus:2141573 [details] [associations]
symbol:FBH2 "AT4G09180" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AL161514 HOGENOM:HOG000095218 ProtClustDB:CLSN2679906
EMBL:AF488613 EMBL:BT010423 EMBL:AK230384 IPI:IPI00545642
PIR:B85093 RefSeq:NP_192657.1 UniGene:At.33710
ProteinModelPortal:Q9M0R0 SMR:Q9M0R0 PaxDb:Q9M0R0 PRIDE:Q9M0R0
EnsemblPlants:AT4G09180.1 GeneID:826499 KEGG:ath:AT4G09180
TAIR:At4g09180 eggNOG:NOG277140 InParanoid:Q9M0R0 OMA:MENLMED
PhylomeDB:Q9M0R0 Genevestigator:Q9M0R0 Uniprot:Q9M0R0
Length = 262
Score = 137 (53.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 28/59 (47%), Positives = 44/59 (74%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 395
+R A +++ER RR RI++++R LQEL+P+ +K T+ A ML+EA+EY+K LQ Q+Q
Sbjct: 187 KRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQ 245
Score = 37 (18.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 176 DAAPQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQ 210
D +P +K ++ L + + T+ KGE SGQ
Sbjct: 127 DVSPGSKRSREMEALFSSPEFTSQMKGEQS--SGQ 159
>TAIR|locus:2035237 [details] [associations]
symbol:AT1G01260 "AT1G01260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009694 "jasmonic acid metabolic process" evidence=RCA]
[GO:0009753 "response to jasmonic acid stimulus" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG313259 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF251698 EMBL:AC023628 EMBL:AF488559
EMBL:AY079012 EMBL:AY120752 EMBL:BT004517 IPI:IPI00539052
PIR:H86142 RefSeq:NP_001077440.1 RefSeq:NP_001184883.1
RefSeq:NP_171634.1 UniGene:At.28312 ProteinModelPortal:Q9LNJ5
SMR:Q9LNJ5 IntAct:Q9LNJ5 EnsemblPlants:AT1G01260.1
EnsemblPlants:AT1G01260.2 EnsemblPlants:AT1G01260.3 GeneID:839545
KEGG:ath:AT1G01260 TAIR:At1g01260 InParanoid:Q9LNJ5 OMA:FPANYCY
PhylomeDB:Q9LNJ5 ProtClustDB:CLSN2682849 Genevestigator:Q9LNJ5
Uniprot:Q9LNJ5
Length = 590
Score = 141 (54.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 26/82 (31%), Positives = 53/82 (64%)
Query: 317 SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNL-SERRRRDRINEKMRALQELIPHCNKTD 375
++A G + N+ +R RA ++++ +ER+RR+++N++ AL+ ++P+ +K D
Sbjct: 404 ADAVGADESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMD 463
Query: 376 KASMLDEAIEYLKSLQLQLQVM 397
KAS+L +A+ Y+ L +L+VM
Sbjct: 464 KASLLGDAVSYINELHAKLKVM 485
>TAIR|locus:2085964 [details] [associations]
symbol:BHLH32 "AT3G25710" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] [GO:0080147 "root hair cell development"
evidence=IMP] [GO:0048364 "root development" evidence=IEP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB028607
GO:GO:0003677 GO:GO:0009718 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0016036
HOGENOM:HOG000243133 ProtClustDB:CLSN2689090 EMBL:DQ205679
EMBL:AY058840 EMBL:AY079033 EMBL:AY086383 EMBL:AF488571
IPI:IPI00523379 RefSeq:NP_189199.1 UniGene:At.22148
ProteinModelPortal:Q9LS08 SMR:Q9LS08 IntAct:Q9LS08 STRING:Q9LS08
PRIDE:Q9LS08 EnsemblPlants:AT3G25710.1 GeneID:822159
KEGG:ath:AT3G25710 TAIR:At3g25710 eggNOG:NOG304577 OMA:RERINTH
PhylomeDB:Q9LS08 Genevestigator:Q9LS08 GO:GO:0080147 Uniprot:Q9LS08
Length = 344
Score = 137 (53.3 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 321 GFESGA-GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASM 379
GF+ G +AQ + A++ H+ +ERRRR+RIN + L+ ++P+ KTDKAS+
Sbjct: 110 GFDGEIMGKLSAQEVMDAKALAASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASL 169
Query: 380 LDEAIEYLKSLQLQ 393
L E I+++K L+ Q
Sbjct: 170 LAEVIQHMKELKRQ 183
>TAIR|locus:2090847 [details] [associations]
symbol:ICE1 "AT3G26744" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA;TAS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IDA] [GO:0050826 "response to freezing"
evidence=RCA;IMP] [GO:0010440 "stomatal lineage progression"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009410 "response to xenobiotic
stimulus" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0048522 "positive regulation of
cellular process" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0045893 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0050826 EMBL:AB016889 GO:GO:0010440
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB026648 EMBL:AY195621
EMBL:AY079016 EMBL:BT020379 EMBL:AK228443 IPI:IPI00518051
IPI:IPI00656676 RefSeq:NP_001030774.1 RefSeq:NP_001030776.2
RefSeq:NP_189309.2 UniGene:At.25302 ProteinModelPortal:Q9LSE2
SMR:Q9LSE2 STRING:Q9LSE2 PaxDb:Q9LSE2 PRIDE:Q9LSE2
EnsemblPlants:AT3G26744.1 EnsemblPlants:AT3G26744.2
EnsemblPlants:AT3G26744.4 GeneID:822287 KEGG:ath:AT3G26744
TAIR:At3g26744 eggNOG:NOG236974 HOGENOM:HOG000085036
InParanoid:Q9LSE2 OMA:NSESSGM PhylomeDB:Q9LSE2
ProtClustDB:CLSN2690572 Genevestigator:Q9LSE2 GermOnline:AT3G26744
Uniprot:Q9LSE2
Length = 494
Score = 139 (54.0 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 45/166 (27%), Positives = 78/166 (46%)
Query: 237 CGSNQVAYDLD-MSRASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSK 295
CG +L+ ++ G + KV+ P E + +PT+ SK
Sbjct: 189 CGGFTAPLELEGFGSPANGGFVGNRAKVLKPLEVLASSGAQPTLFQKRAAMRQSSG--SK 246
Query: 296 QSTGDNS-LKRKSRDAVDSECQSEAAGF--------ESGAGNKTAQRSGSCR-RSRAAEV 345
++S ++R S D E E +G ESG ++ Q G + + +
Sbjct: 247 MGNSESSGMRRFSDDGDMDETGIEVSGLNYESDEINESGKAAESVQIGGGGKGKKKGMPA 306
Query: 346 HNL-SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 390
NL +ERRRR ++N+++ L+ ++P +K D+AS+L +AI+YLK L
Sbjct: 307 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKEL 352
>TAIR|locus:2065086 [details] [associations]
symbol:AT2G40200 "AT2G40200" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AF085279 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488586 EMBL:BT029997 EMBL:BT030051
IPI:IPI00547467 PIR:E84826 RefSeq:NP_181549.1 UniGene:At.37090
ProteinModelPortal:Q9XEF0 SMR:Q9XEF0 EnsemblPlants:AT2G40200.1
GeneID:818611 KEGG:ath:AT2G40200 TAIR:At2g40200 eggNOG:NOG318931
HOGENOM:HOG000095217 InParanoid:Q9XEF0 OMA:QPETISD PhylomeDB:Q9XEF0
ProtClustDB:CLSN2913057 ArrayExpress:Q9XEF0 Genevestigator:Q9XEF0
Uniprot:Q9XEF0
Length = 254
Score = 132 (51.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 309 DAVDSECQSEAAGFESGA--GNKTAQRS-GSCRRSRA-AEVHNLSERRRRDRINEKMRAL 364
++ DS+ GF S + GN A G ++ + + H L+E+RRRDRIN + AL
Sbjct: 26 ESSDSDWNRFNLGFSSSSFGGNFPADDCVGGIEKAESLSRSHRLAEKRRRDRINSHLTAL 85
Query: 365 QELIPHCNKTDKASMLDEAIEYLKSLQ 391
++L+P+ +K DKA++L IE +K L+
Sbjct: 86 RKLVPNSDKLDKAALLATVIEQVKELK 112
>TAIR|locus:2059979 [details] [associations]
symbol:FBH4 "AT2G42280" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0046685
"response to arsenic-containing substance" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC002561 GO:GO:0048573
Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG312535
HOGENOM:HOG000242890 EMBL:BT015339 EMBL:BT015712 EMBL:AK228981
IPI:IPI00530686 IPI:IPI00538142 PIR:T00937 RefSeq:NP_181757.2
RefSeq:NP_973670.1 UniGene:At.12448 UniGene:At.43726
ProteinModelPortal:Q66GR3 SMR:Q66GR3 PRIDE:Q66GR3
EnsemblPlants:AT2G42280.1 GeneID:818829 KEGG:ath:AT2G42280
TAIR:At2g42280 InParanoid:Q66GR3 OMA:NDNRANC PhylomeDB:Q66GR3
ProtClustDB:CLSN2681218 Genevestigator:Q66GR3 Uniprot:Q66GR3
Length = 359
Score = 135 (52.6 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 27/61 (44%), Positives = 44/61 (72%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 396
+R A +++ER RR RI+E+MR LQEL+P+ +K T+ + MLD A++Y+K LQ Q ++
Sbjct: 282 KRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKI 341
Query: 397 M 397
+
Sbjct: 342 L 342
>UNIPROTKB|Q6ESL3 [details] [associations]
symbol:OJ1294_G06.8 "DNA binding protein-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005093 ProteinModelPortal:Q6ESL3
EnsemblPlants:LOC_Os09g24490.1 KEGG:dosa:Os09t0410700-00
Gramene:Q6ESL3 OMA:RRHECIA Uniprot:Q6ESL3
Length = 363
Score = 135 (52.6 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 327 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 386
G TA+ + A+ H+ +ERRRR RIN + L+ L+P+ KTDKAS+L E IE+
Sbjct: 91 GRVTAREIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEH 150
Query: 387 LKSLQLQ 393
+K L+ Q
Sbjct: 151 VKELKRQ 157
>UNIPROTKB|Q6Z9R3 [details] [associations]
symbol:P0461F06.33 "BHLH protein family-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000145
eggNOG:NOG315110 EMBL:AP004693 EnsemblPlants:LOC_Os08g36740.1
OMA:SAMREMI Uniprot:Q6Z9R3
Length = 246
Score = 130 (50.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 342 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 395
+ + +++ R RR+RI+E++R LQ L+P K D ASMLDEAI Y+K L+ Q+Q
Sbjct: 158 STDPQSVAARMRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQ 211
>TAIR|locus:2074865 [details] [associations]
symbol:HEC2 "AT3G50330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] [GO:0080126 "ovary
septum development" evidence=IGI] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL132976
HOGENOM:HOG000242863 ProtClustDB:CLSN2684406 GO:GO:0048462
GO:GO:0010500 EMBL:BT010607 EMBL:AK175679 EMBL:AK175912
EMBL:AK176020 IPI:IPI00532987 PIR:T45579 RefSeq:NP_190602.1
UniGene:At.35505 ProteinModelPortal:Q9SND4 SMR:Q9SND4 IntAct:Q9SND4
EnsemblPlants:AT3G50330.1 GeneID:824195 KEGG:ath:AT3G50330
TAIR:At3g50330 eggNOG:NOG315110 InParanoid:Q9SND4 OMA:NANMAAM
PhylomeDB:Q9SND4 Genevestigator:Q9SND4 GO:GO:0080126 Uniprot:Q9SND4
Length = 231
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 347 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 395
+++ R RR+RI+E++R LQ L+P K D ASMLDEAI Y+K L+ Q+Q
Sbjct: 131 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQ 179
>UNIPROTKB|Q8S0N2 [details] [associations]
symbol:P0692C11.41-1 "BHLH transcription factor-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:CM000138 EMBL:AP003381 EMBL:AP003273 EMBL:AK106119
RefSeq:NP_001044022.1 UniGene:Os.25546 GeneID:4327679
KEGG:osa:4327679 eggNOG:NOG254276 OMA:EPDMEAM
ProtClustDB:CLSN2919059 Uniprot:Q8S0N2
Length = 393
Score = 134 (52.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 342 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-WMG 400
+++ ++ R RR+R+++++R LQ+L+P NK D ASMLDEA YLK L+ Q+Q + +G
Sbjct: 282 SSDPQTVAARLRRERVSDRLRVLQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLETLG 341
Query: 401 SGMAPLMFPGMQHY 414
+ P Q+Y
Sbjct: 342 TTTTTSKLP-QQYY 354
>TAIR|locus:2155543 [details] [associations]
symbol:HEC1 "HECATE 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010500 "transmitting tissue
development" evidence=IGI] [GO:0048462 "carpel formation"
evidence=IMP] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:AF488618 EMBL:AK228927 IPI:IPI00530790
RefSeq:NP_201507.1 UniGene:At.28829 ProteinModelPortal:Q9FHA7
SMR:Q9FHA7 IntAct:Q9FHA7 EnsemblPlants:AT5G67060.1 GeneID:836841
KEGG:ath:AT5G67060 TAIR:At5g67060 eggNOG:NOG267961
HOGENOM:HOG000242863 InParanoid:Q9FHA7 OMA:FLFNSTH PhylomeDB:Q9FHA7
ProtClustDB:CLSN2684406 Genevestigator:Q9FHA7 GO:GO:0048462
GO:GO:0010500 Uniprot:Q9FHA7
Length = 241
Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 347 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 395
+++ R RR+RI+E++R LQ L+P K D ASMLDEAI Y+K L+ Q+Q
Sbjct: 134 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQ 182
>TAIR|locus:2039094 [details] [associations]
symbol:AIB "AT2G46510" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009611 "response to wounding" evidence=IEP;RCA]
[GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP]
[GO:0006612 "protein targeting to membrane" evidence=RCA]
[GO:0007165 "signal transduction" evidence=RCA] [GO:0009414
"response to water deprivation" evidence=RCA] [GO:0009620 "response
to fungus" evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic
process" evidence=RCA] [GO:0009723 "response to ethylene stimulus"
evidence=RCA] [GO:0009733 "response to auxin stimulus"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0009737
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009611
GO:GO:0009738 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC006526 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC006418
EMBL:AY094399 IPI:IPI00535471 PIR:G84903 RefSeq:NP_566078.1
UniGene:At.19872 ProteinModelPortal:Q9ZPY8 SMR:Q9ZPY8 PaxDb:Q9ZPY8
PRIDE:Q9ZPY8 EnsemblPlants:AT2G46510.1 GeneID:819262
KEGG:ath:AT2G46510 TAIR:At2g46510 eggNOG:NOG313259
HOGENOM:HOG000238207 InParanoid:Q9ZPY8 OMA:KIMEDER PhylomeDB:Q9ZPY8
ProtClustDB:CLSN2917347 Genevestigator:Q9ZPY8 InterPro:IPR025610
Pfam:PF14215 Uniprot:Q9ZPY8
Length = 566
Score = 135 (52.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 35/109 (32%), Positives = 61/109 (55%)
Query: 293 TSKQSTGDNSLKRKSRDAVDSECQS--EAAGFESGAGNKTAQRSGSCRRSRAAEV--HNL 348
+S ST N+ + KS + S AG S K ++ G + E H
Sbjct: 341 SSNPST--NTQQEKSESCTEKRPVSLLAGAGIVSVVDEKRPRKRGRKPANGREEPLNHVE 398
Query: 349 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
+ER+RR+++N++ AL+ ++P+ +K DKAS+L +AI Y+K LQ ++++M
Sbjct: 399 AERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIM 447
>TAIR|locus:2026629 [details] [associations]
symbol:EGL3 "AT1G63650" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009957 "epidermal
cell fate specification" evidence=RCA;IMP] [GO:0001708 "cell fate
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009913 "epidermal cell
differentiation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251687 EMBL:AF013465
EMBL:AF027732 EMBL:AC011622 IPI:IPI00545374 PIR:D96661
RefSeq:NP_001185302.1 RefSeq:NP_176552.1 RefSeq:NP_974080.1
UniGene:At.25024 ProteinModelPortal:Q9CAD0 SMR:Q9CAD0 IntAct:Q9CAD0
STRING:Q9CAD0 PRIDE:Q9CAD0 EnsemblPlants:AT1G63650.1
EnsemblPlants:AT1G63650.2 EnsemblPlants:AT1G63650.3 GeneID:842669
KEGG:ath:AT1G63650 GeneFarm:1894 TAIR:At1g63650 eggNOG:NOG320411
HOGENOM:HOG000237985 InParanoid:Q9CAD0 OMA:ERASANC PhylomeDB:Q9CAD0
ProtClustDB:CLSN2682588 Genevestigator:Q9CAD0 GermOnline:AT1G63650
GO:GO:0009957 Uniprot:Q9CAD0
Length = 596
Score = 135 (52.6 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 346 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 395
H LSE++RR+++NE+ L+ +IP +K DK S+LD+ IEYL+ LQ ++Q
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQ 455
>TAIR|locus:2028957 [details] [associations]
symbol:RHD6 "AT1G66470" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0048766 "root
hair initiation" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0048766 EMBL:AC074025
EMBL:AY128310 EMBL:BT006320 EMBL:AF488615 IPI:IPI00529158
PIR:C96690 RefSeq:NP_176820.1 UniGene:At.35765
ProteinModelPortal:Q9C707 SMR:Q9C707 IntAct:Q9C707
EnsemblPlants:AT1G66470.1 GeneID:842965 KEGG:ath:AT1G66470
TAIR:At1g66470 eggNOG:NOG301765 HOGENOM:HOG000006063
InParanoid:Q9C707 OMA:HESFPPP PhylomeDB:Q9C707
ProtClustDB:CLSN2681768 Genevestigator:Q9C707 Uniprot:Q9C707
Length = 298
Score = 130 (50.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 34/106 (32%), Positives = 61/106 (57%)
Query: 297 STG--DNSLKRKS---RDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 351
+TG + SL KS + + E + SG KT + + + + +L+ +
Sbjct: 156 TTGSRNESLSPKSAGNKRSHTGESTQPSKKLSSGVTGKTKPKPTTSPK----DPQSLAAK 211
Query: 352 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
RR+RI+E+++ LQEL+P+ K D +ML++AI Y+K LQ+Q++V+
Sbjct: 212 NRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVL 257
>UNIPROTKB|Q67TR8 [details] [associations]
symbol:B1342C04.6 "Basic helix-loop-helix (BHLH)-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 EMBL:AP005655 EMBL:AP006057
EMBL:AK060477 EMBL:AK070458 RefSeq:NP_001063357.1 UniGene:Os.51063
EnsemblPlants:LOC_Os09g28210.1 GeneID:4347252 KEGG:osa:4347252
OMA:AYPAFHA ProtClustDB:CLSN2697769 Uniprot:Q67TR8
Length = 236
Score = 127 (49.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 347 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 395
+++ R RR+RI+E++R LQ L+P K D ASMLDEAI Y+K L+ Q+Q
Sbjct: 153 SVAARLRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKSQVQ 201
Score = 38 (18.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 165 NAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQS-TAPPKGELGPCSGQF 211
N+ P + ++ Q + L L F + T+PP +G S QF
Sbjct: 7 NSYPESQLDLMSTMLQLEQLTALSDQSLFMAAPTSPPVSPMGTPSPQF 54
>UNIPROTKB|Q5TKP7 [details] [associations]
symbol:OJ1362_G11.11 "Putative uncharacterized protein
OJ1362_G11.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC104713 ProteinModelPortal:Q5TKP7
EnsemblPlants:LOC_Os05g46370.1 KEGG:dosa:Os05t0541400-00
Gramene:Q5TKP7 HOGENOM:HOG000238211 Uniprot:Q5TKP7
Length = 416
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/62 (41%), Positives = 44/62 (70%)
Query: 342 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-WMG 400
+++ ++ R RR+R++E++R LQ L+P +K D A+MLDEA YLK L+ QL+ + +G
Sbjct: 304 SSDPQTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALETLG 363
Query: 401 SG 402
+G
Sbjct: 364 NG 365
>TAIR|locus:2089418 [details] [associations]
symbol:AT3G21330 "AT3G21330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP001305 EMBL:AF488617 EMBL:BT004279 EMBL:BT020364
IPI:IPI00541948 RefSeq:NP_188770.1 UniGene:At.38078
ProteinModelPortal:Q8S3D2 SMR:Q8S3D2 EnsemblPlants:AT3G21330.1
GeneID:821687 KEGG:ath:AT3G21330 TAIR:At3g21330 eggNOG:NOG330001
HOGENOM:HOG000095219 InParanoid:Q9LIG3 OMA:LMARELC PhylomeDB:Q8S3D2
ProtClustDB:CLSN2685101 Genevestigator:Q8S3D2 Uniprot:Q8S3D2
Length = 373
Score = 130 (50.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 342 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
+ + ++ R+RR+RI+EK+R LQ L+P K D ASMLDEA YLK L+ Q++ +
Sbjct: 276 STDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKAL 331
>UNIPROTKB|Q8S0C6 [details] [associations]
symbol:B1112D09.6 "Uncharacterized protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000138
HSSP:P01106 EMBL:AP003432 EMBL:AK106333
EnsemblPlants:LOC_Os01g39330.1 eggNOG:NOG273636 OMA:LNDSFHT
Uniprot:Q8S0C6
Length = 454
Score = 131 (51.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 23/70 (32%), Positives = 44/70 (62%)
Query: 325 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 384
G G + + + + + + H +SER+RR+++N+ L+ L+P C+K DK ++L A
Sbjct: 246 GRGRQQEEAAAASATNSSQLYHMMSERKRREKLNDSFHTLRSLLPPCSKKDKTTVLINAA 305
Query: 385 EYLKSLQLQL 394
+YLKSL+ ++
Sbjct: 306 KYLKSLETEI 315
>TAIR|locus:2156015 [details] [associations]
symbol:RSL1 "AT5G37800" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000006063 ProtClustDB:CLSN2681768 EMBL:AB016873
IPI:IPI00523734 RefSeq:NP_198596.1 UniGene:At.55195
ProteinModelPortal:Q9FJ00 SMR:Q9FJ00 EnsemblPlants:AT5G37800.1
GeneID:833758 KEGG:ath:AT5G37800 TAIR:At5g37800 eggNOG:NOG303056
InParanoid:Q9FJ00 OMA:MDFNASS PhylomeDB:Q9FJ00
Genevestigator:Q9FJ00 Uniprot:Q9FJ00
Length = 307
Score = 128 (50.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 23/51 (45%), Positives = 41/51 (80%)
Query: 347 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
+L+ + RR+RI+E+++ LQEL+P+ K D +ML++AI Y+K LQ+Q++V+
Sbjct: 213 SLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVL 263
>UNIPROTKB|Q69TX2 [details] [associations]
symbol:P0021C04.13 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP004687
ProteinModelPortal:Q69TX2 EnsemblPlants:LOC_Os06g10820.1
Gramene:Q69TX2 HOGENOM:HOG000241748 Uniprot:Q69TX2
Length = 211
Score = 123 (48.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 338 RRSR-AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 395
R +R ++E +++ R RR+R++++MRALQ L+P + D ASML+EAI Y+K L+ +Q
Sbjct: 116 RNARVSSEPQSVAARLRRERVSQRMRALQRLVPGGARLDTASMLEEAIRYVKFLKGHVQ 174
>UNIPROTKB|Q2QMM8 [details] [associations]
symbol:LOC_Os12g40630 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 Gramene:Q2QMM8
eggNOG:NOG272270 Uniprot:Q2QMM8
Length = 249
Score = 125 (49.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 352 RRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQVMWMGSGM 403
+RR +INE ++ LQ+L+P C+K++ +AS LD+ I Y+KSLQ Q M +G M
Sbjct: 107 KRRCKINENLKTLQQLVPVCDKSNNQASTLDKTIRYMKSLQQHAQAMSVGCSM 159
>UNIPROTKB|Q75GI1 [details] [associations]
symbol:OSJNBa0013A09.16 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC145380
EMBL:AC135228 EMBL:AK120539 RefSeq:NP_001051131.1 UniGene:Os.7441
EnsemblPlants:LOC_Os03g51580.1 GeneID:4333965 KEGG:osa:4333965
OMA:DSCITEQ Uniprot:Q75GI1
Length = 359
Score = 124 (48.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 24/65 (36%), Positives = 45/65 (69%)
Query: 331 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 390
A + + R + + H L+ER+RR++++++ AL +++P K DKAS+L +AI+Y+K L
Sbjct: 167 APAAAASRPASQNQEHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQL 226
Query: 391 QLQLQ 395
Q Q++
Sbjct: 227 QDQVK 231
Score = 46 (21.3 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 517 SSCVP-FSGGAATDNSPLSGKMVGERRRLIK 546
SSC F GG AT P V ER L+K
Sbjct: 261 SSCDENFDGGEATAGLPEIEARVSERTVLVK 291
>UNIPROTKB|Q9ASJ3 [details] [associations]
symbol:P0439B06.24 "Putative uncharacterized protein
P0439B06.24" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP002882 UniGene:Os.30617
ProteinModelPortal:Q9ASJ3 Gramene:Q9ASJ3 OMA:KAITYVK
ProtClustDB:CLSN2918925 Uniprot:Q9ASJ3
Length = 294
Score = 125 (49.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 25/92 (27%), Positives = 54/92 (58%)
Query: 306 KSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQ 365
++R A +C+ + ++ + + + + + + + RR+RI+E+++ LQ
Sbjct: 169 EARAAGKKQCRKGSKPNKAASASSPSPSPSPSPSPNKEQPQSAAAKVRRERISERLKVLQ 228
Query: 366 ELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
+L+P+ K D +ML++AI Y+K LQLQ++V+
Sbjct: 229 DLVPNGTKVDLVTMLEKAINYVKFLQLQVKVL 260
>UNIPROTKB|Q69JI7 [details] [associations]
symbol:OSJNBa0026C08.39-1 "BHLH protein family-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008215 EMBL:CM000146 EMBL:EU837261 EMBL:AP006169
EMBL:AP005759 RefSeq:NP_001063459.1 UniGene:Os.16741
EnsemblPlants:LOC_Os09g29930.1 GeneID:4347359 KEGG:osa:4347359
OMA:HNIVTSA ProtClustDB:CLSN2697427 Uniprot:Q69JI7
Length = 504
Score = 132 (51.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 32/73 (43%), Positives = 50/73 (68%)
Query: 324 SGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDKASMLDE 382
S +G+ T QR S RS+ H+ +E+RRR +IN++ + L+EL+PH + K DKA+ L E
Sbjct: 205 SCSGSGTDQRPSS-PRSK----HSATEQRRRSKINDRFQILRELLPHSDQKRDKATFLLE 259
Query: 383 AIEYLKSLQLQLQ 395
IEY++ LQ ++Q
Sbjct: 260 VIEYIRFLQEKVQ 272
Score = 41 (19.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 162 LQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPP 200
L A P ++HDA P + G + +F Q P
Sbjct: 18 LYTTAAKDPSLQLHDAKPPPPSQGFFLRTHDFLQPLEKP 56
>TAIR|locus:2062225 [details] [associations]
symbol:AT2G22750 "AT2G22750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF488562 EMBL:DQ446549
EMBL:DQ653015 IPI:IPI00538506 IPI:IPI00846694 PIR:D84616
RefSeq:NP_001077944.1 RefSeq:NP_179860.2 UniGene:At.39395
ProteinModelPortal:Q1PF17 SMR:Q1PF17 EnsemblPlants:AT2G22750.2
GeneID:816805 KEGG:ath:AT2G22750 TAIR:At2g22750 eggNOG:NOG266714
HOGENOM:HOG000240300 InParanoid:Q8S3F3 OMA:FDISIIA PhylomeDB:Q1PF17
ProtClustDB:CLSN2690865 Genevestigator:Q1PF17 Uniprot:Q1PF17
Length = 305
Score = 125 (49.1 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 327 GNKTAQRSGSCRRSRA-AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIE 385
G K AQ S RS++ A+ H L+ER+RR+++ ++ AL LIP K DKAS+L +AI+
Sbjct: 110 GTKRAQ---SLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIK 166
Query: 386 YLKSLQ 391
++K LQ
Sbjct: 167 HIKYLQ 172
>TAIR|locus:2039445 [details] [associations]
symbol:AMS "AT2G16910" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] [GO:0048658 "tapetal
layer development" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC005167 EMBL:AF488565 IPI:IPI00529182 PIR:G84545
RefSeq:NP_179283.2 UniGene:At.48482 UniGene:At.70395
ProteinModelPortal:Q9ZVX2 SMR:Q9ZVX2 STRING:Q9ZVX2 PRIDE:Q9ZVX2
EnsemblPlants:AT2G16910.1 GeneID:816194 KEGG:ath:AT2G16910
TAIR:At2g16910 eggNOG:NOG313389 HOGENOM:HOG000033929
InParanoid:Q9ZVX2 OMA:PRTKSCE PhylomeDB:Q9ZVX2
ProtClustDB:CLSN2690121 ArrayExpress:Q9ZVX2 Genevestigator:Q9ZVX2
GO:GO:0048658 Uniprot:Q9ZVX2
Length = 571
Score = 129 (50.5 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 31/97 (31%), Positives = 54/97 (55%)
Query: 295 KQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRR 354
+Q D + R S+C + + K ++SG + S+A + ++ERRRR
Sbjct: 271 QQVVNDKDMNENGRVDSGSDCSDQ---IDDEDDPKYKKKSG--KGSQAKNL--MAERRRR 323
Query: 355 DRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 391
++N+++ AL+ L+P K D+AS+L +AI Y+K LQ
Sbjct: 324 KKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQ 360
>UNIPROTKB|Q7X7U7 [details] [associations]
symbol:OSJNBb0091E11.4 "OJ990528_30.9 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008210
EMBL:CM000141 EMBL:AL606629 EMBL:AK059273 EMBL:AK101636
EMBL:AL662938 RefSeq:NP_001053182.1 UniGene:Os.55009
EnsemblPlants:LOC_Os04g41570.1 EnsemblPlants:LOC_Os04g41570.2
EnsemblPlants:LOC_Os04g41570.3 GeneID:4336261 KEGG:osa:4336261
eggNOG:NOG241248 OMA:SKGLCLV Uniprot:Q7X7U7
Length = 156
Score = 111 (44.1 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 348 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLM 407
+S + ++D+I E++ ALQ+L+ KTD AS+L EA Y+K L QL+V+ AP +
Sbjct: 50 VSPKEKKDKIGERVAALQQLVSPFGKTDTASVLQEASGYIKFLHQQLEVLSSPYMRAPPV 109
Query: 408 FPG 410
PG
Sbjct: 110 -PG 111
>TAIR|locus:2026037 [details] [associations]
symbol:FBH3 "AT1G51140" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0048573 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC079828 EMBL:AY034941 EMBL:AY063120
IPI:IPI00519239 PIR:H96548 RefSeq:NP_564583.1 UniGene:At.19155
ProteinModelPortal:Q9C690 SMR:Q9C690 PaxDb:Q9C690 PRIDE:Q9C690
EnsemblPlants:AT1G51140.1 GeneID:841537 KEGG:ath:AT1G51140
TAIR:At1g51140 eggNOG:NOG312535 HOGENOM:HOG000242890
InParanoid:Q9C690 OMA:TKDEDSA PhylomeDB:Q9C690
ProtClustDB:CLSN2917227 Genevestigator:Q9C690 Uniprot:Q9C690
Length = 379
Score = 126 (49.4 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 25/61 (40%), Positives = 44/61 (72%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDKASMLDEAIEYLKSLQLQLQV 396
+R A +++ER RR +I+E+MR LQ+L+P+ + +T+ A MLD A++Y+K LQ Q++
Sbjct: 307 KRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKA 366
Query: 397 M 397
+
Sbjct: 367 L 367
>TAIR|locus:2207061 [details] [associations]
symbol:AT1G72210 "AT1G72210" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005634 GO:GO:0009536
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC067754 HOGENOM:HOG000238962 eggNOG:NOG281753
ProtClustDB:CLSN2679534 EMBL:AJ459771 EMBL:BT003871 EMBL:BT006086
IPI:IPI00538709 PIR:F96745 RefSeq:NP_177366.1 UniGene:At.35130
ProteinModelPortal:Q9C7T4 SMR:Q9C7T4 EnsemblPlants:AT1G72210.1
GeneID:843553 KEGG:ath:AT1G72210 TAIR:At1g72210 InParanoid:Q9C7T4
OMA:PQDPFSY PhylomeDB:Q9C7T4 Genevestigator:Q9C7T4 Uniprot:Q9C7T4
Length = 320
Score = 124 (48.7 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 310 AVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAE----VHNLSERRRRDRINEKMRALQ 365
AVD+E Q + +G G + +R+ S + E H ER RR ++NE + L+
Sbjct: 87 AVDTESQPPPSDVAAGGGRRKRRRTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLR 146
Query: 366 ELIP--HCNKTDKASMLDEAIEYLKSLQLQLQVM 397
L+P + + D+AS++ AI YLK L+ LQ M
Sbjct: 147 SLMPPYYAQRGDQASIVGGAINYLKELEHHLQSM 180
>UNIPROTKB|Q2QLR0 [details] [associations]
symbol:LOC_Os12g43620 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011
KEGG:dosa:Os12t0632600-00 Gramene:Q2QLR0 OMA:TNVMPFP Uniprot:Q2QLR0
Length = 338
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 310 AVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIP 369
A+++ + AA + G G S S + H ++ERRRR++IN++ L +IP
Sbjct: 136 AMETTATARAAVKKGGGGGS----SSSAAAPGYVQDHIIAERRRREKINQRFIELSTVIP 191
Query: 370 HCNKTDKASMLDEAIEYLKSLQLQLQVM 397
K DKA++L +A++Y+K LQ +++ +
Sbjct: 192 GLKKMDKATILGDAVKYVKELQEKVKTL 219
>UNIPROTKB|Q84R60 [details] [associations]
symbol:OSJNBb0113I20.8 "Putative ammonium transporter"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P22415 EMBL:AC116369 ProteinModelPortal:Q84R60 Gramene:Q84R60
Uniprot:Q84R60
Length = 353
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 334 SGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQ 393
SGS + A+ H ++ER+RR++IN++ L +IP K DKA++L +A+ Y+K +Q +
Sbjct: 181 SGSSSAAPYAQEHIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKEMQEK 240
Query: 394 L 394
L
Sbjct: 241 L 241
>UNIPROTKB|Q7XPS7 [details] [associations]
symbol:OSJNBa0065O17.4 "OSJNBa0065O17.4 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AL606682
ProteinModelPortal:Q7XPS7 Gramene:Q7XPS7 Uniprot:Q7XPS7
Length = 567
Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 323 ESGAGNKTAQRS-GSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLD 381
+ GA T + S + + + H +SERRRR+++NE L+ ++P +K DKAS+L+
Sbjct: 369 DCGARMSTGRGSRAALTQESGIKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILE 428
Query: 382 EAIEYLKSLQLQLQ 395
E I YLK L+ +++
Sbjct: 429 ETIAYLKVLEKRVK 442
>TAIR|locus:2046198 [details] [associations]
symbol:FRU "AT2G28160" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010039 "response to iron ion" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0034756 "regulation of iron ion
transport" evidence=IMP] [GO:0071281 "cellular response to iron
ion" evidence=IEP] [GO:0071369 "cellular response to ethylene
stimulus" evidence=IEP] [GO:0071732 "cellular response to nitric
oxide" evidence=IEP] [GO:0000041 "transition metal ion transport"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0071281 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC005851 GO:GO:0071732 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0071369 EMBL:AF488570 EMBL:BT026446 IPI:IPI00547189
PIR:E84681 RefSeq:NP_850114.1 UniGene:At.43510
ProteinModelPortal:Q0V7X4 SMR:Q0V7X4 IntAct:Q0V7X4 STRING:Q0V7X4
PaxDb:Q0V7X4 PRIDE:Q0V7X4 EnsemblPlants:AT2G28160.1 GeneID:817362
KEGG:ath:AT2G28160 TAIR:At2g28160 eggNOG:NOG236355
HOGENOM:HOG000006047 InParanoid:Q0V7X4 OMA:NLKLWIT PhylomeDB:Q0V7X4
ProtClustDB:CLSN2690963 Genevestigator:Q0V7X4 GO:GO:0034756
Uniprot:Q0V7X4
Length = 318
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 28/87 (32%), Positives = 50/87 (57%)
Query: 309 DAVDSECQSEAAGFESGAGNK-TAQRSGSCRRSRAAEVHNL-SERRRRDRINEKMRALQE 366
D+V + + + + G + T + R+++ L SERRRR R+ +K+ AL+
Sbjct: 93 DSVRAGGEEDEEDYNDGDDSSATTTNNDGTRKTKTDRSRTLISERRRRGRMKDKLYALRS 152
Query: 367 LIPHCNKTDKASMLDEAIEYLKSLQLQ 393
L+P+ K DKAS++ +A+ Y++ LQ Q
Sbjct: 153 LVPNITKMDKASIVGDAVLYVQELQSQ 179
>TAIR|locus:2045263 [details] [associations]
symbol:AT2G31730 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009723 "response to
ethylene stimulus" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] InterPro:IPR011598
PROSITE:PS50888 SMART:SM00353 EMBL:CP002685 GO:GO:0003700
GO:GO:0009739 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240890 OMA:SKGLCLV EMBL:AJ576041 IPI:IPI00539360
RefSeq:NP_180732.3 UniGene:At.38180 ProteinModelPortal:Q7XJU1
SMR:Q7XJU1 DNASU:817730 EnsemblPlants:AT2G31730.1 GeneID:817730
KEGG:ath:AT2G31730 TAIR:At2g31730 InParanoid:Q7XJU1
PhylomeDB:Q7XJU1 ProtClustDB:CLSN2687695 Genevestigator:Q7XJU1
Uniprot:Q7XJU1
Length = 153
Score = 109 (43.4 bits), Expect = 0.00013, P = 0.00013
Identities = 21/60 (35%), Positives = 44/60 (73%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
+R +++++ + S + R+D++ E++ ALQ+L+ KTD AS+L E ++Y++ LQ Q++V+
Sbjct: 27 KRHKSSDL-SFSSKERKDKLAERISALQQLVSPYGKTDTASVLLEGMQYIQFLQEQVKVL 85
>UNIPROTKB|Q6ZBQ2 [details] [associations]
symbol:P0605H02.26 "BHLH protein family-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 ProtClustDB:CLSN2697427 EMBL:HQ858865 EMBL:AP004620
EMBL:AK100183 RefSeq:NP_001062109.1 UniGene:Os.5093 STRING:Q6ZBQ2
EnsemblPlants:LOC_Os08g38210.1 GeneID:4345899 KEGG:osa:4345899
OMA:KPTHDFL Uniprot:Q6ZBQ2
Length = 508
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 34/107 (31%), Positives = 59/107 (55%)
Query: 291 NRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEV-HNLS 349
+R+S + D+ +R V S + E G G + +G+ + H+ +
Sbjct: 171 SRSSGGAGFDDDDGHAARREVSSSLKELTVRVE-GKGGSCSGSAGTDQMPNTPRSKHSAT 229
Query: 350 ERRRRDRINEKMRALQELIPHCN-KTDKASMLDEAIEYLKSLQLQLQ 395
E+RRR +IN++ + L++L+PH + K DKAS L E IEY++ LQ ++Q
Sbjct: 230 EQRRRSKINDRFQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQ 276
>UNIPROTKB|E9PKF0 [details] [associations]
symbol:ARNTL "Aryl hydrocarbon receptor nuclear
translocator-like protein 1" species:9606 "Homo sapiens"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0000982 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0001190
"RNA polymerase II transcription factor binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0016604 "nuclear
body" evidence=IEA] [GO:0032922 "circadian regulation of gene
expression" evidence=IEA] [GO:0042176 "regulation of protein
catabolic process" evidence=IEA] [GO:0043425 "bHLH transcription
factor binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR001067
InterPro:IPR011598 Pfam:PF00010 PRINTS:PR00785 PROSITE:PS50888
SMART:SM00353 GO:GO:0005737 GO:GO:0003677 GO:GO:0007623
GO:GO:0005667 GO:GO:0000060 GO:GO:0000982 GO:GO:0001190
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0042176 EMBL:AC016884
EMBL:AC022878 IPI:IPI00413132 HGNC:HGNC:701
ProteinModelPortal:E9PKF0 SMR:E9PKF0 Ensembl:ENST00000529388
ArrayExpress:E9PKF0 Bgee:E9PKF0 Uniprot:E9PKF0
Length = 135
Score = 102 (41.0 bits), Expect = 0.00015, P = 0.00015
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQ 391
R A E H+ E+RRRD++N + L L+P CN K DK ++L A++++K+L+
Sbjct: 69 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 126
>UNIPROTKB|Q6Z1F9 [details] [associations]
symbol:OSJNBa0033D24.39 "BHLH transcription factor-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 GO:GO:0005634
EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP005439
EMBL:AP004464 RefSeq:NP_001062365.1 UniGene:Os.89290 GeneID:4346166
KEGG:osa:4346166 Uniprot:Q6Z1F9
Length = 143
Score = 104 (41.7 bits), Expect = 0.00018, P = 0.00018
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 361 MRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF 408
MR LQ L+P C+K T KA +LDE I Y++SLQ Q++ + M + M+P+++
Sbjct: 1 MRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLY 50
>RGD|3092 [details] [associations]
symbol:Mitf "microphthalmia-associated transcription factor"
species:10116 "Rattus norvegicus" [GO:0001077 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003682 "chromatin
binding" evidence=IEA;ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISO] [GO:0006461 "protein complex
assembly" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA;ISO] [GO:0030154 "cell differentiation" evidence=ISO]
[GO:0030316 "osteoclast differentiation" evidence=IEA;ISO]
[GO:0030318 "melanocyte differentiation" evidence=IEA;ISO]
[GO:0042127 "regulation of cell proliferation" evidence=IEA;ISO]
[GO:0042981 "regulation of apoptotic process" evidence=ISO]
[GO:0043010 "camera-type eye development" evidence=IEA;ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA;ISO] [GO:0043234 "protein complex" evidence=IEA;ISO]
[GO:0043473 "pigmentation" evidence=ISO] [GO:0045165 "cell fate
commitment" evidence=IEA;ISO] [GO:0045670 "regulation of osteoclast
differentiation" evidence=IEA;ISO] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046849 "bone remodeling" evidence=IEA;ISO]
[GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR011598 InterPro:IPR024097 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 RGD:3092 GO:GO:0005634 GO:GO:0043066 GO:GO:0043234
GO:GO:0006461 GO:GO:0016055 GO:GO:0003677 GO:GO:0046849 GO:GO:0003682
GO:GO:0003705 GO:GO:0042127 GO:GO:0001077 GO:GO:0043010 GO:GO:0045670
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014 GO:GO:0030318
GO:GO:0045165 GO:GO:0030316 eggNOG:NOG251286 HOGENOM:HOG000231368
OrthoDB:EOG495ZRR EMBL:AF029886 IPI:IPI00563001 UniGene:Rn.31427
ProteinModelPortal:O88368 STRING:O88368 UCSC:RGD:3092
InParanoid:O88368 ArrayExpress:O88368 Genevestigator:O88368
GermOnline:ENSRNOG00000008658 Uniprot:O88368
Length = 110
Score = 101 (40.6 bits), Expect = 0.00019, P = 0.00019
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 346 HNLSERRRRDRINEKMRALQELIPHCNKTD----KASMLDEAIEYLKSLQLQLQ 395
HNL ERRRR IN++++ L LIP N D K ++L +++Y++ LQ + Q
Sbjct: 25 HNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 78
>UNIPROTKB|O88368 [details] [associations]
symbol:Mitf "Microphthalmia-associated transcription
factor" species:10116 "Rattus norvegicus" [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR011598
InterPro:IPR024097 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
RGD:3092 GO:GO:0005634 GO:GO:0043066 GO:GO:0043234 GO:GO:0006461
GO:GO:0016055 GO:GO:0003677 GO:GO:0046849 GO:GO:0003682
GO:GO:0003705 GO:GO:0042127 GO:GO:0001077 GO:GO:0043010
GO:GO:0045670 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
GO:GO:0030318 GO:GO:0045165 GO:GO:0030316 eggNOG:NOG251286
HOGENOM:HOG000231368 OrthoDB:EOG495ZRR EMBL:AF029886
IPI:IPI00563001 UniGene:Rn.31427 ProteinModelPortal:O88368
STRING:O88368 UCSC:RGD:3092 InParanoid:O88368 ArrayExpress:O88368
Genevestigator:O88368 GermOnline:ENSRNOG00000008658 Uniprot:O88368
Length = 110
Score = 101 (40.6 bits), Expect = 0.00019, P = 0.00019
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 346 HNLSERRRRDRINEKMRALQELIPHCNKTD----KASMLDEAIEYLKSLQLQLQ 395
HNL ERRRR IN++++ L LIP N D K ++L +++Y++ LQ + Q
Sbjct: 25 HNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 78
>TAIR|locus:2164605 [details] [associations]
symbol:AT5G56960 "AT5G56960" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010200 "response to chitin" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010200 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB024035 IPI:IPI00545938 RefSeq:NP_200506.1 UniGene:At.55597
ProteinModelPortal:Q9LTS4 SMR:Q9LTS4 EnsemblPlants:AT5G56960.1
GeneID:835798 KEGG:ath:AT5G56960 TAIR:At5g56960 eggNOG:NOG254434
HOGENOM:HOG000095216 InParanoid:Q9LTS4 OMA:RENATTH PhylomeDB:Q9LTS4
ProtClustDB:CLSN2687375 Genevestigator:Q9LTS4 Uniprot:Q9LTS4
Length = 466
Score = 124 (48.7 bits), Expect = 0.00019, P = 0.00019
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 301 NSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEK 360
N +R +R+ ++ E +G G G T SG S H +SER+RR+++NE
Sbjct: 253 NQRERFTRE--NATTHGEGSGGSGGGGRYT---SGP---SATQLQHMISERKRREKLNES 304
Query: 361 MRALQELIPHCNKTDKASMLDEAIEYLKSLQ 391
+AL+ L+P K DKAS+L A E L SLQ
Sbjct: 305 FQALRSLLPPGTKKDKASVLSIAREQLSSLQ 335
>TAIR|locus:2090679 [details] [associations]
symbol:AT3G19500 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB025624 EMBL:AY084520 EMBL:AF488631 IPI:IPI00518921
RefSeq:NP_566639.1 UniGene:At.38400 ProteinModelPortal:Q9LT67
SMR:Q9LT67 EnsemblPlants:AT3G19500.1 GeneID:821484
KEGG:ath:AT3G19500 TAIR:At3g19500 eggNOG:NOG294378
HOGENOM:HOG000240890 OMA:HVENSNG PhylomeDB:Q9LT67
ProtClustDB:CLSN2688564 Genevestigator:Q9LT67 Uniprot:Q9LT67
Length = 270
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 305 RKSRDA--VDSECQSEAAGFESGAGN--KTAQ-RSGSCRRSRAAEVHNLSERR-RRDRIN 358
R S DA VD +S +G GN ++ Q R + R E ++ + R++R+
Sbjct: 103 RNSNDACTVDKSTKSSTKK-RTGTGNGQESDQNRKPGKKGKRNQEKSSVGIAKVRKERLG 161
Query: 359 EKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 397
E++ ALQ+L+ KTD AS+L EA+ Y+K LQ Q+QV+
Sbjct: 162 ERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQVL 200
>TAIR|locus:505006103 [details] [associations]
symbol:AT1G05805 "AT1G05805" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC009999 HOGENOM:HOG000242890 EMBL:BT000954 EMBL:AY086106
IPI:IPI00516925 PIR:F86192 RefSeq:NP_563749.1 UniGene:At.11933
ProteinModelPortal:Q8H102 SMR:Q8H102 IntAct:Q8H102 STRING:Q8H102
PaxDb:Q8H102 PRIDE:Q8H102 EnsemblPlants:AT1G05805.1 GeneID:837090
KEGG:ath:AT1G05805 TAIR:At1g05805 eggNOG:NOG249421
InParanoid:Q8H102 OMA:NEVNETP PhylomeDB:Q8H102
ProtClustDB:CLSN2687697 Genevestigator:Q8H102 Uniprot:Q8H102
Length = 362
Score = 121 (47.7 bits), Expect = 0.00027, P = 0.00027
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 395
+R A +++ER RR RI+ K++ LQ+L+P+ +K T + MLD A++++K LQ QLQ
Sbjct: 286 KRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQ 344
>UNIPROTKB|Q336V8 [details] [associations]
symbol:Os10g0544200 "Os10g0544200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000086 EMBL:AP008216
EMBL:CM000147 Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG245311
EMBL:AK063669 RefSeq:NP_001065200.1 UniGene:Os.46563
EnsemblPlants:LOC_Os10g39750.1 GeneID:4349271 KEGG:osa:4349271
ProtClustDB:CLSN2693493 Uniprot:Q336V8
Length = 380
Score = 121 (47.7 bits), Expect = 0.00029, P = 0.00029
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 322 FESGAGNKTAQRSGSCRRSR-AAEVHNL-SERRRRDRINEKMRALQELIPHCNKTDKASM 379
F G G + R SCR + A NL +ERRRR R+N+++ L+ ++P +K D+ S+
Sbjct: 171 FGGGGGAAASVRPRSCRPPQPGAPSKNLMAERRRRKRLNDRLSMLRSVVPRISKMDRTSI 230
Query: 380 LDEAIEYLKSL 390
L + I Y+K L
Sbjct: 231 LGDTIGYVKEL 241
>UNIPROTKB|E9PPV4 [details] [associations]
symbol:ARNTL "Aryl hydrocarbon receptor nuclear
translocator-like protein 1" species:9606 "Homo sapiens"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IEA] InterPro:IPR001067
InterPro:IPR011598 Pfam:PF00010 PRINTS:PR00785 PROSITE:PS50888
SMART:SM00353 GO:GO:0005737 GO:GO:0003700 GO:GO:0005667
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC016884 EMBL:AC022878
HGNC:HGNC:701 IPI:IPI00978797 ProteinModelPortal:E9PPV4 SMR:E9PPV4
Ensembl:ENST00000530357 ArrayExpress:E9PPV4 Bgee:E9PPV4
Uniprot:E9PPV4
Length = 141
Score = 102 (41.0 bits), Expect = 0.00030, P = 0.00030
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQ 391
R A E H+ E+RRRD++N + L L+P CN K DK ++L A++++K+L+
Sbjct: 26 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 83
>UNIPROTKB|Q69MD0 [details] [associations]
symbol:OSJNBb0019B14.23 "BHLH-like protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP005755
ProteinModelPortal:Q69MD0 EnsemblPlants:LOC_Os09g28900.1
Gramene:Q69MD0 OMA:EMLGAEC Uniprot:Q69MD0
Length = 215
Score = 115 (45.5 bits), Expect = 0.00035, P = 0.00035
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 391
R +RA H+ +ER+RR+RIN + L+ L+P ++ DKA++L E + Y++ L+
Sbjct: 24 RWTRARRSHSEAERKRRERINAHLDTLRGLVPSASRMDKAALLGEVVRYVRKLR 77
>UNIPROTKB|Q5MP56 [details] [associations]
symbol:BA1 "Uncharacterized protein" species:4577 "Zea
mays" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY683001 EMBL:AY683002
EMBL:BT062649 RefSeq:NP_001105271.1 UniGene:Zm.18382 IntAct:Q5MP56
GeneID:542186 KEGG:zma:542186 HOGENOM:HOG000238432 OMA:MLEQAIH
Uniprot:Q5MP56
Length = 219
Score = 115 (45.5 bits), Expect = 0.00038, P = 0.00038
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 325 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 384
G G+ +R G+ + + +++ R RR RI+++ R L+ L+P +K D SML++AI
Sbjct: 39 GGGSGARRRPGA---KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAI 95
Query: 385 EYLKSLQLQLQV 396
Y+K L+ Q+ +
Sbjct: 96 HYVKFLKTQISL 107
>UNIPROTKB|Q8LSP3 [details] [associations]
symbol:OJ1203D03.3 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000009 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC099732
EnsemblPlants:LOC_Os03g12760.1 KEGG:dosa:Os03t0229100-00
HOGENOM:HOG000239880 OMA:DSCLNIT Uniprot:Q8LSP3
Length = 451
Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 338 RRSRA---AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL 394
RRSR A+ H ++ER+RR+++ ++ AL ++P KTDK S+L I+Y+K L+ ++
Sbjct: 277 RRSRPPANAQEHVIAERKRREKLQQQFVALATIVPGLKKTDKISLLGSTIDYVKQLEEKV 336
Query: 395 QVMWMGS 401
+ + GS
Sbjct: 337 KALEEGS 343
>UNIPROTKB|Q948Y2 [details] [associations]
symbol:Plw-OSB2 "R-type basic helix-loop-helix protein"
species:4530 "Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 HOGENOM:HOG000237985 EMBL:AB021080
ProteinModelPortal:Q948Y2 Gramene:Q948Y2 Genevestigator:Q948Y2
Uniprot:Q948Y2
Length = 451
Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 346 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 395
H +SERRRR+++NE L+ L+P K DKAS+L E I YLK L+ +++
Sbjct: 379 HVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETITYLKVLEKRVK 428
>UNIPROTKB|Q9FTQ1 [details] [associations]
symbol:P0665D10.21 "DNA binding protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:AP002861 EMBL:AP002745 RefSeq:NP_001042409.1 UniGene:Os.26488
STRING:Q9FTQ1 GeneID:4324583 KEGG:osa:4324583 OMA:VRFTFLI
ProtClustDB:CLSN2691217 Uniprot:Q9FTQ1
Length = 267
Score = 117 (46.2 bits), Expect = 0.00039, P = 0.00039
Identities = 29/85 (34%), Positives = 52/85 (61%)
Query: 312 DSECQS-EAAGFESGAGNKTAQRS-GSCRRSRAA---EVHNLSERRRRDRINEKMRALQE 366
D E + +A+ + A + A+R+ G R +AA + H+ +ERRRR+RIN + L+
Sbjct: 43 DGETEGMDASAAAAVAAMEMAKRNCGGGREEKAAMALKSHSEAERRRRERINAHLATLRT 102
Query: 367 LIPHCNKTDKASMLDEAIEYLKSLQ 391
++P +K DKA++L E + ++K L+
Sbjct: 103 MVPCTDKMDKAALLAEVVGHVKKLK 127
>UNIPROTKB|Q2R3F6 [details] [associations]
symbol:Os11g0523700 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0050826
GO:GO:0010440 Gene3D:4.10.280.10 SUPFAM:SSF47459
RefSeq:NP_001067987.2 UniGene:Os.56356
EnsemblPlants:LOC_Os11g32100.1 GeneID:4350609 KEGG:osa:4350609
OMA:DGKDSNA Uniprot:Q2R3F6
Length = 524
Score = 129 (50.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 29/96 (30%), Positives = 53/96 (55%)
Query: 300 DNSLKRKSRDAVDSECQSEAAGFESGA-----GNKTAQRSGSCRRSRAAEVHNLSERRRR 354
D+ L + ++ + + G +SGA N T G ++ + ++ERRRR
Sbjct: 286 DDGLSIDASGGLNYDSEDARGGEDSGAKKESNANSTVTGDGKGKKKGMPAKNLMAERRRR 345
Query: 355 DRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 390
++N+++ L+ ++P +K D+AS+L +AIEYLK L
Sbjct: 346 KKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL 381
Score = 37 (18.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 507 MQNQIVSLPSSSCVP 521
+QN++ S P++S +P
Sbjct: 388 LQNELESSPATSSLP 402
>UNIPROTKB|Q657D1 [details] [associations]
symbol:P0697C12.40 "BHLH transcription-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003141
EMBL:AP003296 Uniprot:Q657D1
Length = 484
Score = 124 (48.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 24/54 (44%), Positives = 40/54 (74%)
Query: 342 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 395
+++ ++ R+RR+RI+E++R LQ+L+P K D ASMLDEA YL+ L+ Q++
Sbjct: 371 SSDPQTVAARQRRERISERLRVLQKLVPGGAKMDTASMLDEAANYLRFLKSQIR 424
Score = 41 (19.5 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 310 AVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAE 344
A S+C+ G G + +R G R+ +AAE
Sbjct: 219 ATTSQCERVRGGGGGGGCGRKQRRPG--RKRKAAE 251
>TAIR|locus:504954829 [details] [associations]
symbol:GL3 "AT5G41315" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0010091 "trichome branching" evidence=IMP]
[GO:0001708 "cell fate specification" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0009957 "epidermal cell fate
specification" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610 Pfam:PF14215
GO:GO:0010091 HSSP:P61244 EMBL:AB006707 eggNOG:NOG320411
HOGENOM:HOG000237985 ProtClustDB:CLSN2682588 GO:GO:0009957
EMBL:AF246291 IPI:IPI00543830 RefSeq:NP_680372.1 UniGene:At.27204
ProteinModelPortal:Q9FN69 SMR:Q9FN69 IntAct:Q9FN69 STRING:Q9FN69
EnsemblPlants:AT5G41315.1 GeneID:834133 KEGG:ath:AT5G41315
TAIR:At5g41315 InParanoid:Q9FN69 OMA:ERTSANC PhylomeDB:Q9FN69
Genevestigator:Q9FN69 Uniprot:Q9FN69
Length = 637
Score = 129 (50.5 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 22/50 (44%), Positives = 38/50 (76%)
Query: 346 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 395
H + E++RR+++NE+ L+++IP NK DK S+LD+ IEYL+ L+ ++Q
Sbjct: 442 HAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQ 491
Score = 39 (18.8 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 208 SGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKV--IS 265
+G + +S L E+ C ++ SS C S Q + R + V+++ I
Sbjct: 281 TGGASQVQSWQLMDDELSNCVHQSLNSSDCVS-QTFVEGAAGRVAYGARKSRVQRLGQIQ 339
Query: 266 PSERG-KTETIEP 277
+R KT + +P
Sbjct: 340 EQQRNVKTLSFDP 352
>MGI|MGI:2684845 [details] [associations]
symbol:Arntl2 "aryl hydrocarbon receptor nuclear
translocator-like 2" species:10090 "Mus musculus" [GO:0000982 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity" evidence=ISO] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISO] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0048511 "rhythmic process"
evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
SMART:SM00353 InterPro:IPR001610 MGI:MGI:2684845 GO:GO:0005737
GO:GO:0003677 GO:GO:0007623 GO:GO:0045944 GO:GO:0005667
GO:GO:0004871 GO:GO:0000982 SMART:SM00086 TIGRFAMs:TIGR00229
GeneTree:ENSGT00650000092935 HOGENOM:HOG000234379
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOVERGEN:HBG107503 CTD:56938
eggNOG:NOG288887 KO:K09099 OMA:IPQCNPM EMBL:AY005163 EMBL:AY014836
EMBL:BC108965 EMBL:BC108966 IPI:IPI00129201 IPI:IPI00828642
RefSeq:NP_758513.1 UniGene:Mm.333500 UniGene:Mm.442075
ProteinModelPortal:Q2VPD4 SMR:Q2VPD4 STRING:Q2VPD4
PhosphoSite:Q2VPD4 PRIDE:Q2VPD4 Ensembl:ENSMUST00000080530
Ensembl:ENSMUST00000111639 Ensembl:ENSMUST00000129788 GeneID:272322
KEGG:mmu:272322 UCSC:uc009esj.1 InParanoid:Q2VPD4 OrthoDB:EOG4DFPNB
NextBio:393555 Bgee:Q2VPD4 Genevestigator:Q2VPD4 Uniprot:Q2VPD4
Length = 579
Score = 122 (48.0 bits), Expect = 0.00044, P = 0.00044
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 304 KRKSRDA--VDSECQSEAAGFESGAGNKTAQ----RSGSCRRSRAAEVHNLSERRRRDRI 357
KR+ RD+ + SE ++ ES N A R+G S E H+ E+RRRD++
Sbjct: 6 KRRGRDSQPLQSEFMTDTT-VESLPQNPFASLLSTRTGVSAPSGIREAHSQMEKRRRDKM 64
Query: 358 NEKMRALQELIP-H---CNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 405
N ++ L +IP H +K DK S+L A++YL+SL+ + +++G P
Sbjct: 65 NHLIQKLSSMIPPHIPTAHKLDKLSVLRRAVQYLRSLRGMTE-LYLGENSKP 115
>UNIPROTKB|Q7F7Z2 [details] [associations]
symbol:Os01g0159800 "ESTs C26093(C11622)" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:CM000138 OMA:QPETISD ProtClustDB:CLSN2691085 EMBL:AP002539
RefSeq:NP_001042087.1 UniGene:Os.1443
EnsemblPlants:LOC_Os01g06640.1 EnsemblPlants:LOC_Os01g06640.2
GeneID:4324065 KEGG:osa:4324065 Uniprot:Q7F7Z2
Length = 258
Score = 116 (45.9 bits), Expect = 0.00047, P = 0.00047
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 334 SG-SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 391
SG S +RA ++H+ +ERRRR+RIN + L+ +IP + DKA++L ++ +K L+
Sbjct: 56 SGRSATEARALKIHSEAERRRRERINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLK 114
>TAIR|locus:2123954 [details] [associations]
symbol:AT4G29930 "AT4G29930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161575 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AK117730 EMBL:BT005869 EMBL:AY568654
EMBL:AJ630482 EMBL:AK176201 EMBL:AK176276 EMBL:AK176674
EMBL:AK222212 EMBL:AK228201 EMBL:AF488569 IPI:IPI00516806
IPI:IPI00544272 IPI:IPI00546879 IPI:IPI00892082
RefSeq:NP_001031752.1 RefSeq:NP_001078471.1 RefSeq:NP_001119080.1
RefSeq:NP_194722.2 UniGene:At.44068 ProteinModelPortal:Q700E3
SMR:Q700E3 IntAct:Q700E3 EnsemblPlants:AT4G29930.3 GeneID:829116
KEGG:ath:AT4G29930 TAIR:At4g29930 eggNOG:NOG294060
HOGENOM:HOG000006429 InParanoid:Q8GYC3 OMA:PIENIGE PhylomeDB:Q700E3
ProtClustDB:CLSN2680169 Genevestigator:Q700E3 Uniprot:Q700E3
Length = 263
Score = 116 (45.9 bits), Expect = 0.00049, P = 0.00049
Identities = 23/67 (34%), Positives = 47/67 (70%)
Query: 324 SGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEA 383
SG+G ++ G+ S A+ + +SER RR ++N+++ AL+ ++P+ +K DKAS++ ++
Sbjct: 35 SGSGESSSP-DGAAT-SPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDS 92
Query: 384 IEYLKSL 390
I+Y++ L
Sbjct: 93 IDYMQEL 99
>UNIPROTKB|C9JBW0 [details] [associations]
symbol:KIAA2018 "Basic helix-loop-helix domain-containing
protein KIAA2018" species:9606 "Homo sapiens" [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC055740 HGNC:HGNC:30494 ChiTaRS:KIAA2018
EMBL:AC108693 IPI:IPI00829891 ProteinModelPortal:C9JBW0 SMR:C9JBW0
Ensembl:ENST00000491165 HOGENOM:HOG000185801 ArrayExpress:C9JBW0
Bgee:C9JBW0 Uniprot:C9JBW0
Length = 88
Score = 97 (39.2 bits), Expect = 0.00051, P = 0.00051
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 328 NKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN---KTDKASMLDEAI 384
N+T + +++R E HN ER R+ +IN + + ELIP C+ K K +LD+A
Sbjct: 7 NETPTKKQHRKKNR--ETHNAVERHRKKKINAGINRIGELIP-CSPALKQSKNMILDQAF 63
Query: 385 EYLKSLQLQLQVMWMGSG 402
+Y+ L+ Q + + G
Sbjct: 64 KYITELKRQNDELLLNGG 81
>TAIR|locus:2076581 [details] [associations]
symbol:AT3G57800 "AT3G57800" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL049660 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000037005 ProtClustDB:CLSN2680198
EMBL:AF488593 EMBL:AL132977 EMBL:AY139773 EMBL:BT003037
EMBL:AY085849 IPI:IPI00532305 IPI:IPI00535946 PIR:T46002
RefSeq:NP_567057.2 RefSeq:NP_850745.1 UniGene:At.34797
ProteinModelPortal:Q3EAI1 EnsemblPlants:AT3G57800.1 GeneID:825530
KEGG:ath:AT3G57800 TAIR:At3g57800 eggNOG:NOG254513
InParanoid:Q3EAI1 OMA:MVASANL PhylomeDB:Q3EAI1
Genevestigator:Q3EAI1 Uniprot:Q3EAI1
Length = 426
Score = 114 (45.2 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 268 ERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAG 327
+R KTE E + N+ + + + KRK + + +S +S
Sbjct: 139 DRVKTEPAETDSSQRLISDSAIENQIPCPNQNNRNGKRKD---FEKKGKSSTKKNKSSEE 195
Query: 328 N-KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TD 375
N K RR +A + H+L+ER RR++IN +M+ LQEL+P C+K TD
Sbjct: 196 NEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTD 245
Score = 49 (22.3 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 377 ASMLDEAIEYLKSLQLQLQVMWM 399
A +LDE I +++SLQ Q++++ M
Sbjct: 294 ALVLDEIINHVQSLQRQVEMLSM 316
Score = 38 (18.4 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 108 DFYSQLFSELPPSGP 122
D + QL + LPP P
Sbjct: 30 DEFRQLVTTLPPENP 44
>UNIPROTKB|Q53L62 [details] [associations]
symbol:LOC_Os11g15210 "Helix-loop-helix DNA-binding domain,
putative" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC145364 EnsemblPlants:LOC_Os11g15210.1
KEGG:dosa:Os11t0258700-00 Uniprot:Q53L62
Length = 458
Score = 121 (47.7 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 346 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 405
H +SERRRR+++ E L+ ++P +K DKAS+L E I YLK L+ +++ + S +P
Sbjct: 245 HVMSERRRREKLKEMFLILKSVVPSIHKVDKASILAETIAYLKELEKRVEELESSSQPSP 304
Score = 41 (19.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 7/32 (21%), Positives = 20/32 (62%)
Query: 55 QTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSN 86
+ Q P ++ P+++ K+ + G+G+ N+++
Sbjct: 197 EVQAVPLISGEPPQKLLKKAVAGAGAWMNNAD 228
>TAIR|locus:2137574 [details] [associations]
symbol:AT4G37850 "AT4G37850" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL035709
EMBL:AL161592 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
ProtClustDB:CLSN2690865 EMBL:AF488567 IPI:IPI00544527 PIR:T06032
RefSeq:NP_195498.3 UniGene:At.31223 ProteinModelPortal:Q9T072
SMR:Q9T072 EnsemblPlants:AT4G37850.1 GeneID:829941
KEGG:ath:AT4G37850 TAIR:At4g37850 eggNOG:NOG262524
InParanoid:Q8S3F0 PhylomeDB:Q9T072 Genevestigator:Q9T072
Uniprot:Q9T072
Length = 328
Score = 116 (45.9 bits), Expect = 0.00079, P = 0.00079
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 327 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 386
G K AQ R A+ H ++ER+RR+++ ++ AL L+P K DKAS+L +A+++
Sbjct: 136 GTKRAQPFS--RNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKH 193
Query: 387 LKSLQ 391
+K LQ
Sbjct: 194 IKYLQ 198
>TAIR|locus:2152262 [details] [associations]
symbol:BIM3 "AT5G38860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000070523 EMBL:AB009048 EMBL:AJ630499 EMBL:AY568671
EMBL:BT033131 IPI:IPI00534511 RefSeq:NP_198702.2 UniGene:At.50495
ProteinModelPortal:Q9FMB6 SMR:Q9FMB6 IntAct:Q9FMB6 PRIDE:Q9FMB6
EnsemblPlants:AT5G38860.1 GeneID:833877 KEGG:ath:AT5G38860
TAIR:At5g38860 eggNOG:NOG267159 InParanoid:Q9FMB6 OMA:TETRSFC
PhylomeDB:Q9FMB6 ProtClustDB:CLSN2918639 Genevestigator:Q9FMB6
Uniprot:Q9FMB6
Length = 298
Score = 115 (45.5 bits), Expect = 0.00085, P = 0.00085
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 312 DSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIP-- 369
D + Q EA + S ++ +G R+ H+ +E+RRR +INE+ ++L ++IP
Sbjct: 5 DIDDQLEADVY-SNLPSRNDSSTGRRNRNSCRSKHSETEQRRRSKINERFQSLMDIIPQN 63
Query: 370 -HCNKTDKASMLDEAIEYLKSLQ 391
+ K DKAS L E IEY+ LQ
Sbjct: 64 QNDQKRDKASFLLEVIEYIHFLQ 86
>UNIPROTKB|Q6YW41 [details] [associations]
symbol:B1131G07.17 "Basic helix-loop-helix (BHLH) family
protein-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P61244 EMBL:AP005797 ProteinModelPortal:Q6YW41
Gramene:Q6YW41 HOGENOM:HOG000083084 Uniprot:Q6YW41
Length = 745
Score = 123 (48.4 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 306 KSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQ 365
+ R A + S AA SG G+ + + + H +SERRRR+R+NE L+
Sbjct: 475 QERAAAAAAAASAAAAQRSGGGDDEDATAAPPPPTSSQLHHMISERRRRERLNESFEHLR 534
Query: 366 ELIPHCNKTDKASMLDEAIEYLKSLQLQL 394
L+P +K DKA++L + +EY+ L Q+
Sbjct: 535 GLLPPGSKKDKATVLAKTLEYMNLLIAQI 563
Score = 45 (20.9 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 97 IHCPIEDSFEKDFYSQ-LFSEL---PPSGP 122
+ +E F +DF+ Q L EL PP+ P
Sbjct: 257 LQASVEQVFSEDFFQQSLLEELLQLPPTRP 286
Score = 40 (19.1 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 6 VSSAMNPCIPDWNFEG 21
V A+ C+P W + G
Sbjct: 176 VCGAVTGCVPGWAYVG 191
>TAIR|locus:2033015 [details] [associations]
symbol:MEE8 "AT1G25310" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0009793 Gene3D:4.10.280.10 EMBL:AC079374
IPI:IPI00520631 RefSeq:NP_173902.1 UniGene:At.51765
ProteinModelPortal:Q9FRI0 SMR:Q9FRI0 EnsemblPlants:AT1G25310.1
GeneID:839115 KEGG:ath:AT1G25310 TAIR:At1g25310
Genevestigator:Q9FRI0 Uniprot:Q9FRI0
Length = 145
Score = 102 (41.0 bits), Expect = 0.00089, P = 0.00089
Identities = 29/106 (27%), Positives = 58/106 (54%)
Query: 290 FNRTSKQSTGDNSLKRKSRD-AVDSECQSEAAGFESGAGNKTAQRSGSC--RRSRAAEVH 346
++ T+ ++ D L+R + + V+ Q +A ES K + C + S ++
Sbjct: 16 YSLTNPEANSD--LRRINNEKGVEKVGQKRSA--ESRREGKKKRVKTQCVIKSSDKSDHD 71
Query: 347 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 392
L +++RR+RI ++ L+E+ P+C ++D ++LD IEY +L+L
Sbjct: 72 TLLKKKRRERIRRQLETLKEITPNCPQSDINAILDCVIEYTNNLRL 117
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.129 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 589 571 0.00080 120 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 147
No. of states in DFA: 623 (66 KB)
Total size of DFA: 340 KB (2171 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 54.20u 0.12s 54.32t Elapsed: 00:00:02
Total cpu time: 54.21u 0.12s 54.33t Elapsed: 00:00:02
Start: Fri May 10 19:13:02 2013 End: Fri May 10 19:13:04 2013
WARNINGS ISSUED: 1