Query 007797
Match_columns 589
No_of_seqs 291 out of 1141
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 15:28:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 1.3E-12 2.8E-17 103.1 6.3 54 342-395 4-60 (60)
2 PF00010 HLH: Helix-loop-helix 99.3 1.7E-12 3.8E-17 102.1 5.5 49 343-391 2-55 (55)
3 smart00353 HLH helix loop heli 99.3 1.4E-11 3.1E-16 95.5 6.7 49 347-395 1-52 (53)
4 KOG1318 Helix loop helix trans 99.2 1.2E-11 2.7E-16 132.4 5.8 61 336-396 227-291 (411)
5 KOG1319 bHLHZip transcription 98.9 7.4E-10 1.6E-14 107.8 3.8 55 344-398 64-125 (229)
6 KOG4304 Transcriptional repres 98.7 6.4E-09 1.4E-13 106.0 4.4 53 344-396 34-94 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.5 1.5E-07 3.2E-12 108.5 6.2 51 343-393 21-75 (803)
8 KOG2483 Upstream transcription 98.0 1.6E-05 3.5E-10 80.6 7.6 53 343-395 60-115 (232)
9 KOG2588 Predicted DNA-binding 98.0 3.1E-06 6.7E-11 98.2 2.5 58 342-399 276-334 (953)
10 KOG3960 Myogenic helix-loop-he 97.9 3E-05 6.4E-10 79.1 6.9 54 346-399 122-177 (284)
11 KOG0561 bHLH transcription fac 97.4 0.00017 3.7E-09 75.2 4.7 52 343-394 61-114 (373)
12 KOG4029 Transcription factor H 97.3 0.00019 4.1E-09 72.0 4.1 55 345-399 112-170 (228)
13 PLN03217 transcription factor 97.2 0.00083 1.8E-08 58.7 5.8 47 354-400 19-71 (93)
14 KOG3910 Helix loop helix trans 96.8 0.0016 3.5E-08 71.9 5.8 56 343-398 527-586 (632)
15 KOG4447 Transcription factor T 94.3 0.028 6E-07 54.2 2.5 51 344-394 80-132 (173)
16 KOG3898 Transcription factor N 93.9 0.11 2.5E-06 53.6 6.2 50 345-394 75-127 (254)
17 KOG3560 Aryl-hydrocarbon recep 92.7 0.1 2.2E-06 58.9 3.7 39 351-389 34-76 (712)
18 KOG3558 Hypoxia-inducible fact 88.7 0.33 7.1E-06 56.2 3.2 44 346-389 50-97 (768)
19 KOG3559 Transcriptional regula 82.3 1.2 2.7E-05 49.1 3.5 42 349-390 8-53 (598)
20 KOG4395 Transcription factor A 81.1 2.3 5E-05 44.4 4.8 51 345-395 177-230 (285)
21 KOG3582 Mlx interactors and re 47.7 4.8 0.0001 47.2 -0.8 53 344-396 653-710 (856)
22 KOG4447 Transcription factor T 37.6 18 0.00039 35.5 1.5 50 349-398 29-80 (173)
23 KOG1924 RhoA GTPase effector D 34.9 48 0.001 40.0 4.5 9 382-390 475-483 (1102)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.35 E-value=1.3e-12 Score=103.11 Aligned_cols=54 Identities=50% Similarity=0.773 Sum_probs=50.2
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHhhCCCC---CCcchhhHHHHHHHHHHHHHHHHH
Q 007797 342 AAEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 395 (589)
Q Consensus 342 a~~~Hn~~ERrRRerINe~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIK~LQ~qvq 395 (589)
.+..|+..||+||++||+.|..|+.+||.+ .|++|++||+.||+||+.|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 355799999999999999999999999998 789999999999999999998863
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.33 E-value=1.7e-12 Score=102.11 Aligned_cols=49 Identities=55% Similarity=0.889 Sum_probs=46.2
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCC-----CCcchhhHHHHHHHHHHHHH
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 391 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~-----~K~dKAsIL~~AI~YIK~LQ 391 (589)
+..|+..||+||++||+.|..|+++||.+ .|++|++||+.||+||+.||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999988 58999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.25 E-value=1.4e-11 Score=95.53 Aligned_cols=49 Identities=53% Similarity=0.736 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhCCC---CCCcchhhHHHHHHHHHHHHHHHHH
Q 007797 347 NLSERRRRDRINEKMRALQELIPH---CNKTDKASMLDEAIEYLKSLQLQLQ 395 (589)
Q Consensus 347 n~~ERrRRerINe~~~~Lr~LVP~---~~K~dKAsIL~~AI~YIK~LQ~qvq 395 (589)
+..||+||++||+.|..|+.+||. ..|++|++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 5689999999999999999999876
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.20 E-value=1.2e-11 Score=132.36 Aligned_cols=61 Identities=41% Similarity=0.735 Sum_probs=54.3
Q ss_pred CccccchhhhcchhHHHHHHHHHHHHHHHHhhCCCCC----CcchhhHHHHHHHHHHHHHHHHHH
Q 007797 336 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQV 396 (589)
Q Consensus 336 ~~rr~ra~~~Hn~~ERrRRerINe~~~~Lr~LVP~~~----K~dKAsIL~~AI~YIK~LQ~qvq~ 396 (589)
..|.+++++.||++|||||++||++|++|..|||.|+ |..|..||..+++||+.||+..+.
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 3455566789999999999999999999999999995 677999999999999999987773
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.91 E-value=7.4e-10 Score=107.78 Aligned_cols=55 Identities=33% Similarity=0.564 Sum_probs=49.6
Q ss_pred hhcchhHHHHHHHHHHHHHHHHhhCCCCC-------CcchhhHHHHHHHHHHHHHHHHHHHh
Q 007797 344 EVHNLSERRRRDRINEKMRALQELIPHCN-------KTDKASMLDEAIEYLKSLQLQLQVMW 398 (589)
Q Consensus 344 ~~Hn~~ERrRRerINe~~~~Lr~LVP~~~-------K~dKAsIL~~AI~YIK~LQ~qvq~L~ 398 (589)
+.|...||+||+.||.++..|+.|||.|. |+.||.||.++|+||.+|+++...-+
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe 125 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQE 125 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999774 88999999999999999988765544
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.75 E-value=6.4e-09 Score=105.96 Aligned_cols=53 Identities=36% Similarity=0.543 Sum_probs=47.2
Q ss_pred hhcchhHHHHHHHHHHHHHHHHhhCCCC--------CCcchhhHHHHHHHHHHHHHHHHHH
Q 007797 344 EVHNLSERRRRDRINEKMRALQELIPHC--------NKTDKASMLDEAIEYLKSLQLQLQV 396 (589)
Q Consensus 344 ~~Hn~~ERrRRerINe~~~~Lr~LVP~~--------~K~dKAsIL~~AI~YIK~LQ~qvq~ 396 (589)
..|-++|||||+|||+.|.+|++||+.+ .|++||.||+.|++|+|.|+...+.
T Consensus 34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 3688999999999999999999999954 5789999999999999999876543
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.48 E-value=1.5e-07 Score=108.47 Aligned_cols=51 Identities=33% Similarity=0.531 Sum_probs=48.0
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCCC----CcchhhHHHHHHHHHHHHHHH
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQ 393 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~~----K~dKAsIL~~AI~YIK~LQ~q 393 (589)
+++|+.+||||||++|..|.+|.+|||.|. |+||-+||++||++||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999999885 999999999999999988875
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.99 E-value=1.6e-05 Score=80.59 Aligned_cols=53 Identities=30% Similarity=0.489 Sum_probs=46.0
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCCC--Cc-chhhHHHHHHHHHHHHHHHHH
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHCN--KT-DKASMLDEAIEYLKSLQLQLQ 395 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~~--K~-dKAsIL~~AI~YIK~LQ~qvq 395 (589)
+..||..||+||+.|.++|..|+.+||... |. ..++||++|++||+.|+.+..
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 457999999999999999999999999775 22 379999999999999986543
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.97 E-value=3.1e-06 Score=98.24 Aligned_cols=58 Identities=34% Similarity=0.563 Sum_probs=52.2
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHhhCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHhc
Q 007797 342 AAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDKASMLDEAIEYLKSLQLQLQVMWM 399 (589)
Q Consensus 342 a~~~Hn~~ERrRRerINe~~~~Lr~LVP~~~-K~dKAsIL~~AI~YIK~LQ~qvq~L~~ 399 (589)
.+.+||++|||.|..||++|.+|+.+||+.. |+.|..+|.+||+||++|+...+.+..
T Consensus 276 kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~ 334 (953)
T KOG2588|consen 276 KRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKL 334 (953)
T ss_pred ccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccch
Confidence 3558999999999999999999999999775 999999999999999999987766543
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.86 E-value=3e-05 Score=79.07 Aligned_cols=54 Identities=31% Similarity=0.423 Sum_probs=47.2
Q ss_pred cchhHHHHHHHHHHHHHHHHhh-CCCCC-CcchhhHHHHHHHHHHHHHHHHHHHhc
Q 007797 346 HNLSERRRRDRINEKMRALQEL-IPHCN-KTDKASMLDEAIEYLKSLQLQLQVMWM 399 (589)
Q Consensus 346 Hn~~ERrRRerINe~~~~Lr~L-VP~~~-K~dKAsIL~~AI~YIK~LQ~qvq~L~~ 399 (589)
-.+.||||=.|+||.|.+|+.- .++-+ .+-|..||..||+||+.||.-++.+..
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~ 177 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ 177 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3689999999999999999875 55554 689999999999999999999988764
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.38 E-value=0.00017 Score=75.24 Aligned_cols=52 Identities=33% Similarity=0.556 Sum_probs=46.5
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCC--CCcchhhHHHHHHHHHHHHHHHH
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQL 394 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~--~K~dKAsIL~~AI~YIK~LQ~qv 394 (589)
++.-|.-||||=.-||-.|..||.|+|.- .|++||.||+.+.+||.+|+.+.
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~K 114 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHK 114 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence 45678889999999999999999999965 59999999999999999997643
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.32 E-value=0.00019 Score=72.00 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=49.1
Q ss_pred hcchhHHHHHHHHHHHHHHHHhhCCC----CCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 007797 345 VHNLSERRRRDRINEKMRALQELIPH----CNKTDKASMLDEAIEYLKSLQLQLQVMWM 399 (589)
Q Consensus 345 ~Hn~~ERrRRerINe~~~~Lr~LVP~----~~K~dKAsIL~~AI~YIK~LQ~qvq~L~~ 399 (589)
.+|..||.|=..+|..|..||.+||. .+|+.|..+|..||.||++|++-++.-+.
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 46778999999999999999999993 56899999999999999999998876553
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.17 E-value=0.00083 Score=58.74 Aligned_cols=47 Identities=26% Similarity=0.490 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhCCCC------CCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 007797 354 RDRINEKMRALQELIPHC------NKTDKASMLDEAIEYLKSLQLQLQVMWMG 400 (589)
Q Consensus 354 RerINe~~~~Lr~LVP~~------~K~dKAsIL~~AI~YIK~LQ~qvq~L~~~ 400 (589)
-|.||+-+..||.|+|.. .|..-+-||++|+.||+.|+.+|..|+..
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999954 36778889999999999999999999853
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.84 E-value=0.0016 Score=71.90 Aligned_cols=56 Identities=27% Similarity=0.296 Sum_probs=48.0
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCCCCc----chhhHHHHHHHHHHHHHHHHHHHh
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHCNKT----DKASMLDEAIEYLKSLQLQLQVMW 398 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~~K~----dKAsIL~~AI~YIK~LQ~qvq~L~ 398 (589)
+...|..||.|-..|||.|++|-.+.-...|. .|..||..||..|-.|++||.+-.
T Consensus 527 R~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 527 RMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred HhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 44688999999999999999999987644443 489999999999999999998754
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.33 E-value=0.028 Score=54.22 Aligned_cols=51 Identities=33% Similarity=0.482 Sum_probs=45.9
Q ss_pred hhcchhHHHHHHHHHHHHHHHHhhCCCC--CCcchhhHHHHHHHHHHHHHHHH
Q 007797 344 EVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQL 394 (589)
Q Consensus 344 ~~Hn~~ERrRRerINe~~~~Lr~LVP~~--~K~dKAsIL~~AI~YIK~LQ~qv 394 (589)
-.||+.||+|-..+|+.|.+||.+||.. .|++|.-.|+-|..||-+|=+-+
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 3699999999999999999999999955 69999999999999999886544
No 16
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=93.93 E-value=0.11 Score=53.56 Aligned_cols=50 Identities=36% Similarity=0.484 Sum_probs=43.1
Q ss_pred hcchhHHHHHHHHHHHHHHHHhhCCC---CCCcchhhHHHHHHHHHHHHHHHH
Q 007797 345 VHNLSERRRRDRINEKMRALQELIPH---CNKTDKASMLDEAIEYLKSLQLQL 394 (589)
Q Consensus 345 ~Hn~~ERrRRerINe~~~~Lr~LVP~---~~K~dKAsIL~~AI~YIK~LQ~qv 394 (589)
.=|..||+|=-.+|+.|+.||++||. ..|+.|+..|.-|-+||..|++-+
T Consensus 75 kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred cccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 34678999999999999999999994 358999999999999999887543
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=92.69 E-value=0.1 Score=58.90 Aligned_cols=39 Identities=38% Similarity=0.692 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhCCC----CCCcchhhHHHHHHHHHHH
Q 007797 351 RRRRDRINEKMRALQELIPH----CNKTDKASMLDEAIEYLKS 389 (589)
Q Consensus 351 RrRRerINe~~~~Lr~LVP~----~~K~dKAsIL~~AI~YIK~ 389 (589)
||-|||+|-.++.|.+|+|- .+|+||.+||.-+|.|++.
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 67799999999999999994 4699999999999999873
No 18
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=88.73 E-value=0.33 Score=56.23 Aligned_cols=44 Identities=34% Similarity=0.505 Sum_probs=37.9
Q ss_pred cchhHHHHHHHHHHHHHHHHhhCCCC----CCcchhhHHHHHHHHHHH
Q 007797 346 HNLSERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKS 389 (589)
Q Consensus 346 Hn~~ERrRRerINe~~~~Lr~LVP~~----~K~dKAsIL~~AI~YIK~ 389 (589)
-.-+.|-||-|-|+-|.+|..+||-- ..+|||+|+.-||-|+|-
T Consensus 50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 34566999999999999999999933 368999999999999983
No 19
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=82.26 E-value=1.2 Score=49.05 Aligned_cols=42 Identities=33% Similarity=0.518 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCC----CcchhhHHHHHHHHHHHH
Q 007797 349 SERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSL 390 (589)
Q Consensus 349 ~ERrRRerINe~~~~Lr~LVP~~~----K~dKAsIL~~AI~YIK~L 390 (589)
..|.||++-|-.|.+|..++|-.. .+||++|+.-|..|||.-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 458999999999999999999553 589999999999999953
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=81.13 E-value=2.3 Score=44.37 Aligned_cols=51 Identities=29% Similarity=0.396 Sum_probs=44.9
Q ss_pred hcchhHHHHHHHHHHHHHHHHhhCCCC---CCcchhhHHHHHHHHHHHHHHHHH
Q 007797 345 VHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 395 (589)
Q Consensus 345 ~Hn~~ERrRRerINe~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIK~LQ~qvq 395 (589)
.-|..||||=..+|..|+.||.+||.. .|+.|-..|..|-.||--|-..++
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 468899999999999999999999966 478999999999999998766553
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=47.66 E-value=4.8 Score=47.17 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=45.6
Q ss_pred hhcchhHHHHHHHHHHHHHHHHhhCCCCC-----CcchhhHHHHHHHHHHHHHHHHHH
Q 007797 344 EVHNLSERRRRDRINEKMRALQELIPHCN-----KTDKASMLDEAIEYLKSLQLQLQV 396 (589)
Q Consensus 344 ~~Hn~~ERrRRerINe~~~~Lr~LVP~~~-----K~dKAsIL~~AI~YIK~LQ~qvq~ 396 (589)
..|.-+|.+||++|.-.+..|-+++-+.. |+.++.-|.++++||..++.+...
T Consensus 653 it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~ 710 (856)
T KOG3582|consen 653 ITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVP 710 (856)
T ss_pred ccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccc
Confidence 36999999999999999999999998664 677888899999999988775543
No 22
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=37.55 E-value=18 Score=35.47 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCC--CcchhhHHHHHHHHHHHHHHHHHHHh
Q 007797 349 SERRRRDRINEKMRALQELIPHCN--KTDKASMLDEAIEYLKSLQLQLQVMW 398 (589)
Q Consensus 349 ~ERrRRerINe~~~~Lr~LVP~~~--K~dKAsIL~~AI~YIK~LQ~qvq~L~ 398 (589)
.|+-|..++|+.+.-|+.|+|+.. ++.+.--|..+-+||.+|.+--..+-
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q~qrv 80 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQKQRV 80 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHHHHHH
Confidence 578888999999999999999774 44443347777777777755444333
No 23
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.87 E-value=48 Score=39.95 Aligned_cols=9 Identities=33% Similarity=0.331 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 007797 382 EAIEYLKSL 390 (589)
Q Consensus 382 ~AI~YIK~L 390 (589)
+|.+|=|.+
T Consensus 475 kA~e~~kk~ 483 (1102)
T KOG1924|consen 475 KAAELEKKF 483 (1102)
T ss_pred HHHHHHHHH
Confidence 445554443
Done!