Query 007797
Match_columns 589
No_of_seqs 291 out of 1141
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.7E-15 5.7E-20 128.5 6.4 59 341-399 5-64 (82)
2 4h10_B Circadian locomoter out 99.5 5.3E-15 1.8E-19 122.8 6.9 60 339-398 5-65 (71)
3 4ati_A MITF, microphthalmia-as 99.5 7.6E-15 2.6E-19 132.3 7.3 62 338-399 23-88 (118)
4 4h10_A ARYL hydrocarbon recept 99.5 3.6E-15 1.2E-19 124.4 3.4 55 338-392 5-63 (73)
5 1an4_A Protein (upstream stimu 99.5 2.7E-15 9.2E-20 121.4 2.1 53 343-395 6-64 (65)
6 1a0a_A BHLH, protein (phosphat 99.5 2.7E-15 9.2E-20 121.7 1.8 53 343-395 3-62 (63)
7 1hlo_A Protein (transcription 99.4 1.7E-13 5.7E-18 115.3 6.3 58 342-399 12-71 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 1.8E-13 6.1E-18 115.7 6.4 57 343-399 3-61 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 3.8E-13 1.3E-17 115.6 6.4 56 343-398 7-65 (88)
10 3u5v_A Protein MAX, transcript 99.3 7.2E-13 2.5E-17 111.3 5.2 57 343-399 6-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 6.8E-12 2.3E-16 106.2 7.1 56 343-398 2-60 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.1 1.2E-10 4.1E-15 95.9 5.1 53 343-395 13-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 3.6E-10 1.2E-14 90.9 6.0 52 344-395 4-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 3.1E-10 1.1E-14 117.0 6.4 53 342-394 12-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 7.8E-10 2.7E-14 115.5 5.6 54 339-392 10-67 (387)
16 4ath_A MITF, microphthalmia-as 98.6 5.9E-08 2E-12 82.8 6.2 45 354-398 4-52 (83)
17 2lfh_A DNA-binding protein inh 98.5 3.4E-08 1.2E-12 81.4 2.6 46 347-392 19-67 (68)
18 4aya_A DNA-binding protein inh 98.0 9.9E-06 3.4E-10 71.0 7.1 51 350-400 33-86 (97)
19 3muj_A Transcription factor CO 38.4 38 0.0013 31.3 5.0 35 356-390 95-133 (138)
20 3iot_A Maltose-binding protein 20.5 26 0.0009 36.0 0.7 10 532-541 435-444 (449)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.58 E-value=1.7e-15 Score=128.45 Aligned_cols=59 Identities=32% Similarity=0.467 Sum_probs=55.4
Q ss_pred chhhhcchhHHHHHHHHHHHHHHHHhhCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 007797 341 RAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQVMWM 399 (589)
Q Consensus 341 ra~~~Hn~~ERrRRerINe~~~~Lr~LVP~~-~K~dKAsIL~~AI~YIK~LQ~qvq~L~~ 399 (589)
..+..|+++||+||++||++|.+|++|||++ .|+||++||++||+||++||.+++.|..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999998 7999999999999999999999999874
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.55 E-value=5.3e-15 Score=122.83 Aligned_cols=60 Identities=25% Similarity=0.411 Sum_probs=54.2
Q ss_pred ccchhhhcchhHHHHHHHHHHHHHHHHhhCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 007797 339 RSRAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQVMW 398 (589)
Q Consensus 339 r~ra~~~Hn~~ERrRRerINe~~~~Lr~LVP~~-~K~dKAsIL~~AI~YIK~LQ~qvq~L~ 398 (589)
.+..+.+|+++||+||++||++|.+|++|||.+ .|+||++||++||+||+.||.++.-|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344567899999999999999999999999975 599999999999999999999987765
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.53 E-value=7.6e-15 Score=132.32 Aligned_cols=62 Identities=34% Similarity=0.580 Sum_probs=50.7
Q ss_pred cccchhhhcchhHHHHHHHHHHHHHHHHhhCCCCC----CcchhhHHHHHHHHHHHHHHHHHHHhc
Q 007797 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQVMWM 399 (589)
Q Consensus 338 rr~ra~~~Hn~~ERrRRerINe~~~~Lr~LVP~~~----K~dKAsIL~~AI~YIK~LQ~qvq~L~~ 399 (589)
++++++..|+++||+||++||++|.+|++|||.|. |++|++||++||+||++||.+++.|..
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678999999999999999999999999985 678999999999999999999998863
No 4
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=3.6e-15 Score=124.37 Aligned_cols=55 Identities=38% Similarity=0.619 Sum_probs=50.5
Q ss_pred cccchhhhcchhHHHHHHHHHHHHHHHHhhCCCC----CCcchhhHHHHHHHHHHHHHH
Q 007797 338 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSLQL 392 (589)
Q Consensus 338 rr~ra~~~Hn~~ERrRRerINe~~~~Lr~LVP~~----~K~dKAsIL~~AI~YIK~LQ~ 392 (589)
+.++++++|+++||+||++||+.|.+|+.|||.| .|+|||+||+.||+|||.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4556678999999999999999999999999987 699999999999999999974
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=2.7e-15 Score=121.44 Aligned_cols=53 Identities=34% Similarity=0.567 Sum_probs=49.0
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCCC------CcchhhHHHHHHHHHHHHHHHHH
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHCN------KTDKASMLDEAIEYLKSLQLQLQ 395 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~~------K~dKAsIL~~AI~YIK~LQ~qvq 395 (589)
+..|+++||+||++||++|.+|+.|||.+. |++|++||++||+||++||++++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999886 78999999999999999998753
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.51 E-value=2.7e-15 Score=121.68 Aligned_cols=53 Identities=30% Similarity=0.476 Sum_probs=48.1
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCC-------CCcchhhHHHHHHHHHHHHHHHHH
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHC-------NKTDKASMLDEAIEYLKSLQLQLQ 395 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~-------~K~dKAsIL~~AI~YIK~LQ~qvq 395 (589)
+.+|+++||+||++||..|.+|+.|||.+ .|++||+||++||+||+.||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999966 467799999999999999998763
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=1.7e-13 Score=115.34 Aligned_cols=58 Identities=29% Similarity=0.521 Sum_probs=54.1
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHhhCCCC--CCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 007797 342 AAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQVMWM 399 (589)
Q Consensus 342 a~~~Hn~~ERrRRerINe~~~~Lr~LVP~~--~K~dKAsIL~~AI~YIK~LQ~qvq~L~~ 399 (589)
.+..|+..||+||++||++|..|+.+||.+ .|++|++||..||+||+.|+.+++.|..
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999987 5899999999999999999999999874
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.41 E-value=1.8e-13 Score=115.70 Aligned_cols=57 Identities=30% Similarity=0.532 Sum_probs=52.9
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCC--CCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQVMWM 399 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~--~K~dKAsIL~~AI~YIK~LQ~qvq~L~~ 399 (589)
+..||..||+||++||+.|..|+++||.+ .|++|++||.+||+||+.|+.+++.|..
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999985 7999999999999999999998888763
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.38 E-value=3.8e-13 Score=115.56 Aligned_cols=56 Identities=32% Similarity=0.503 Sum_probs=51.9
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQVMW 398 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIK~LQ~qvq~L~ 398 (589)
+..||..||+||++||++|..|+.+||.+ .|++|++||.+||+||++|+.+.+.|.
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999976 599999999999999999999887765
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.33 E-value=7.2e-13 Score=111.25 Aligned_cols=57 Identities=30% Similarity=0.426 Sum_probs=49.8
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCC---CCCc-chhhHHHHHHHHHHHHHHHHHHHhc
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPH---CNKT-DKASMLDEAIEYLKSLQLQLQVMWM 399 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~---~~K~-dKAsIL~~AI~YIK~LQ~qvq~L~~ 399 (589)
+..||..||+||++||++|.+|+.+||. ..|. +|+.||.+||+||++||+++++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999999995 3455 7999999999999999999999874
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.26 E-value=6.8e-12 Score=106.15 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=51.5
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQVMW 398 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIK~LQ~qvq~L~ 398 (589)
+..||..||+||+.||++|..|+++||.+ .|++|+.||.+||+||+.|+.+.+.|.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~ 60 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV 60 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999965 588999999999999999999988775
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.06 E-value=1.2e-10 Score=95.89 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=48.5
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhhCCCC--CCcchhhHHHHHHHHHHHHHHHHH
Q 007797 343 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQ 395 (589)
Q Consensus 343 ~~~Hn~~ERrRRerINe~~~~Lr~LVP~~--~K~dKAsIL~~AI~YIK~LQ~qvq 395 (589)
+..||..||+|+..||+.|..|+.+||.. .|++|+.||..||+||++|++.++
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 45799999999999999999999999964 589999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.01 E-value=3.6e-10 Score=90.85 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=47.8
Q ss_pred hhcchhHHHHHHHHHHHHHHHHhhCCCC---CCcchhhHHHHHHHHHHHHHHHHH
Q 007797 344 EVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 395 (589)
Q Consensus 344 ~~Hn~~ERrRRerINe~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIK~LQ~qvq 395 (589)
..||..||+|+..||+.|..|+.+||.. .|++|..||..||+||+.|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999965 489999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=3.1e-10 Score=117.02 Aligned_cols=53 Identities=28% Similarity=0.539 Sum_probs=43.1
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHhhCC-CCCCcchhhHHHHHHHHHHHHHHHH
Q 007797 342 AAEVHNLSERRRRDRINEKMRALQELIP-HCNKTDKASMLDEAIEYLKSLQLQL 394 (589)
Q Consensus 342 a~~~Hn~~ERrRRerINe~~~~Lr~LVP-~~~K~dKAsIL~~AI~YIK~LQ~qv 394 (589)
++..|+++||+||++||+.|.+|++||| ...|+||++||+.||+|||.|+...
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 3557999999999999999999999999 5679999999999999999998653
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.90 E-value=7.8e-10 Score=115.48 Aligned_cols=54 Identities=35% Similarity=0.525 Sum_probs=48.7
Q ss_pred ccchhhhcchhHHHHHHHHHHHHHHHHhhCC----CCCCcchhhHHHHHHHHHHHHHH
Q 007797 339 RSRAAEVHNLSERRRRDRINEKMRALQELIP----HCNKTDKASMLDEAIEYLKSLQL 392 (589)
Q Consensus 339 r~ra~~~Hn~~ERrRRerINe~~~~Lr~LVP----~~~K~dKAsIL~~AI~YIK~LQ~ 392 (589)
.+.++++|+.+||+||+|||+.|.+|+.||| ...|+||++||+.||+|||.|+.
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3445779999999999999999999999999 55799999999999999999974
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.58 E-value=5.9e-08 Score=82.76 Aligned_cols=45 Identities=31% Similarity=0.570 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhCCCCC----CcchhhHHHHHHHHHHHHHHHHHHHh
Q 007797 354 RDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQVMW 398 (589)
Q Consensus 354 RerINe~~~~Lr~LVP~~~----K~dKAsIL~~AI~YIK~LQ~qvq~L~ 398 (589)
|++||++|.+|..|||.++ |.+|++||.+||+||++||++++.|.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~ 52 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK 52 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999874 68999999999999999988776553
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.51 E-value=3.4e-08 Score=81.36 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhCCCC---CCcchhhHHHHHHHHHHHHHH
Q 007797 347 NLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQL 392 (589)
Q Consensus 347 n~~ERrRRerINe~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIK~LQ~ 392 (589)
+..||+|+..||+.|..||.+||.. .|++|..||..||+||+.||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4568999999999999999999965 589999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.01 E-value=9.9e-06 Score=70.97 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 007797 350 ERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQVMWMG 400 (589)
Q Consensus 350 ERrRRerINe~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIK~LQ~qvq~L~~~ 400 (589)
||.|-..||+.|..||.+||.. .|+.|..+|..||+||+.|++.++.-...
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~ 86 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKP 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4677789999999999999965 48999999999999999999999875543
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=38.40 E-value=38 Score=31.34 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhCCCC----CCcchhhHHHHHHHHHHHH
Q 007797 356 RINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSL 390 (589)
Q Consensus 356 rINe~~~~Lr~LVP~~----~K~dKAsIL~~AI~YIK~L 390 (589)
.|+-.|..|+++||.. .++-|-.||++|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4889999999999965 4688999999999998876
No 20
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=20.53 E-value=26 Score=36.00 Aligned_cols=10 Identities=30% Similarity=0.312 Sum_probs=0.0
Q ss_pred CcCccchhhH
Q 007797 532 PLSGKMVGER 541 (589)
Q Consensus 532 ~~~~~~~~~~ 541 (589)
..+|++|-.|
T Consensus 435 ~~~~~~~~~~ 444 (449)
T 3iot_A 435 ITAGKLGTGR 444 (449)
T ss_dssp ----------
T ss_pred cCCCccccCc
Confidence 3445555433
Done!