BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007798
(589 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224090693|ref|XP_002309062.1| predicted protein [Populus trichocarpa]
gi|222855038|gb|EEE92585.1| predicted protein [Populus trichocarpa]
Length = 792
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/425 (82%), Positives = 392/425 (92%), Gaps = 5/425 (1%)
Query: 167 DHKDISNFLQKAEDNL---LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
DH D + AED L +NRKDLTHLKVYAIDVDEADELDDALSA RLQDGRIKV+IH
Sbjct: 369 DHPD--EIISAAEDLLSEPINRKDLTHLKVYAIDVDEADELDDALSATRLQDGRIKVWIH 426
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
VADP +Y++PGS D++AM+RGTSVFLPTATYPMFPEKLAMEGMSL+QGEVCNAVTVSV+
Sbjct: 427 VADPARYVQPGSKVDREAMRRGTSVFLPTATYPMFPEKLAMEGMSLKQGEVCNAVTVSVI 486
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQG 343
LHSDG IAEYSVDNSIIKPTYMLTYESA+ELLH+NL+EEAELK+LSE+A+LRLQWR +QG
Sbjct: 487 LHSDGCIAEYSVDNSIIKPTYMLTYESASELLHMNLDEEAELKLLSESASLRLQWRCEQG 546
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
A+DTATLETRIKV NPEDPEP INLYVE+QADPAMRLVSEMM+LCGE IATYGS NN+ L
Sbjct: 547 AVDTATLETRIKVPNPEDPEPSINLYVENQADPAMRLVSEMMLLCGEVIATYGSCNNIPL 606
Query: 404 PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
PYRGQPQSNIDVSAFAHLPEGPVRS+AIV+IMR A ID RKP+RHGVLGLPGYVQFTSPI
Sbjct: 607 PYRGQPQSNIDVSAFAHLPEGPVRSAAIVRIMRGAEIDIRKPIRHGVLGLPGYVQFTSPI 666
Query: 464 RRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRR 523
RRY+DLLAHYQVKA LRG+SPP SAGQLEGMAS++NMQTR+ RRL ++SL+YW+IEFL+R
Sbjct: 667 RRYLDLLAHYQVKAVLRGDSPPLSAGQLEGMASLINMQTRVVRRLCSSSLQYWMIEFLKR 726
Query: 524 QPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIY 583
QPKE++YRALILRFIKDR AALLLVEVGLQA AWVS+G QIGDEV+V+VEEAHPRDDII
Sbjct: 727 QPKEKKYRALILRFIKDRVAALLLVEVGLQATAWVSLGTQIGDEVQVRVEEAHPRDDIIS 786
Query: 584 LKEVV 588
LKEVV
Sbjct: 787 LKEVV 791
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 134/190 (70%), Gaps = 13/190 (6%)
Query: 1 MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFR-----SLQLRRNKSNLGFRLPACRSE 55
M++VRAVNSCS+FRS+ PP+ SF+ + H R S R +KS GF P R +
Sbjct: 1 MISVRAVNSCSIFRSS--PPVSSFRCRL-NSHLRTTTSSSHHDRYSKSGFGF--PVFRFD 55
Query: 56 RQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLR--VFAKVKVSSG-ELLEDKLENQVLQK 112
L +S S+ S VD+V++EL + RKR R + + +K+++G E L+DKL NQ ++K
Sbjct: 56 LPILGHGDVRSYSLQSFVDTVLEELASYRKRKRQGICSAIKLTTGGEALDDKLVNQAVEK 115
Query: 113 GLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDIS 172
GLL+EFKKDS+RVLLAV QR DGKKNWMVYDQNG + SIKPQQ+T++VPGV+ FD IS
Sbjct: 116 GLLVEFKKDSERVLLAVVQRRDGKKNWMVYDQNGVTSSIKPQQITYIVPGVDNFDQTQIS 175
Query: 173 NFLQKAEDNL 182
+F+QKA+ NL
Sbjct: 176 SFIQKAQQNL 185
>gi|449520221|ref|XP_004167132.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease II,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 809
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/429 (77%), Positives = 387/429 (90%), Gaps = 6/429 (1%)
Query: 167 DHKDI------SNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKV 220
DH D S L+ ++ + +NRK+LT LKVYAIDVDEADELDDALSA RL DGRIK+
Sbjct: 381 DHSDGIIAAAESLLLEASDPDEVNRKNLTDLKVYAIDVDEADELDDALSATRLSDGRIKI 440
Query: 221 YIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV 280
+IHVADP ++++PGS+ D++AMKRGTS+FLPTATYPMFPEKLAM+GMSL+QGE+CNAVTV
Sbjct: 441 WIHVADPARFVQPGSIVDREAMKRGTSIFLPTATYPMFPEKLAMDGMSLKQGEICNAVTV 500
Query: 281 SVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRL 340
SVVLHSDGSIAEYSV+NSIIKPTYMLTYESA+ELL LNL EEAELKILSEAA LRL WR
Sbjct: 501 SVVLHSDGSIAEYSVENSIIKPTYMLTYESASELLSLNLVEEAELKILSEAATLRLAWRR 560
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
QQGAID A+LETRIKVANPEDPEP INLYVE+QADPAMRLVSEMMILCGE IAT+GS NN
Sbjct: 561 QQGAIDMASLETRIKVANPEDPEPEINLYVENQADPAMRLVSEMMILCGEVIATFGSRNN 620
Query: 401 LALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFT 460
+ LPYRGQPQ+NIDVSAFAHLPEGPVRSSAIV+ MRAA IDFRKP+ HG+LG+P YVQFT
Sbjct: 621 IPLPYRGQPQTNIDVSAFAHLPEGPVRSSAIVRTMRAAEIDFRKPMPHGILGIPCYVQFT 680
Query: 461 SPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEF 520
SPIRRY+DLLAHYQVKA L+G+SPP+S GQLEGMA+ VN+ T++ARRLS+ SLRYWI+E+
Sbjct: 681 SPIRRYLDLLAHYQVKAFLKGDSPPYSHGQLEGMAATVNINTKLARRLSSVSLRYWILEY 740
Query: 521 LRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDD 580
LRRQPKE +YRALILRFIKDR A LLLVEVG+QA+AWVS+G QIGDEV+V+VE+AHPRDD
Sbjct: 741 LRRQPKENRYRALILRFIKDRNALLLLVEVGIQASAWVSLGVQIGDEVQVRVEDAHPRDD 800
Query: 581 IIYLKEVVR 589
++ LKE+++
Sbjct: 801 VLSLKEIIQ 809
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/187 (50%), Positives = 124/187 (66%), Gaps = 20/187 (10%)
Query: 1 MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLN 60
+MA R VN+ S+FRS+ PPL +F R S L F P R Q
Sbjct: 26 IMAFRTVNTFSVFRSSLSPPLSAF---------------RWSSKLRFSSPLLRHRYQIFK 70
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVS-----SGELLEDKLENQVLQKGLL 115
G + S +S+ +++++EL A R+R RV A K+ SGE+ EDKL N+ L +GLL
Sbjct: 71 TGGGRLYSFYSVFENIIEELEAPRRRKRVSATAKMGLVGMGSGEVTEDKLVNRTLDRGLL 130
Query: 116 LEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFL 175
LEFKKDS+RVLLAVAQ+PDG KNWMV+DQNG S SIKPQQ+T++VPGVE FDH +I++F+
Sbjct: 131 LEFKKDSERVLLAVAQKPDGXKNWMVFDQNGVSSSIKPQQITYIVPGVENFDHTEIADFI 190
Query: 176 QKAEDNL 182
+KA+DNL
Sbjct: 191 KKAQDNL 197
>gi|449448900|ref|XP_004142203.1| PREDICTED: ribonuclease II, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 809
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/429 (77%), Positives = 387/429 (90%), Gaps = 6/429 (1%)
Query: 167 DHKDI------SNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKV 220
DH D S L+ ++ + +NRK+LT LKVYAIDVDEADELDDALSA RL DGRIK+
Sbjct: 381 DHSDGIIAAAESLLLEASDPDEVNRKNLTDLKVYAIDVDEADELDDALSATRLSDGRIKI 440
Query: 221 YIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV 280
+IHVADP ++++PGS+ D++AMKRGTS+FLPTATYPMFPEKLAM+GMSL+QGE+CNAVTV
Sbjct: 441 WIHVADPARFVQPGSIVDREAMKRGTSIFLPTATYPMFPEKLAMDGMSLKQGEICNAVTV 500
Query: 281 SVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRL 340
SVVLHSDGSIAEYSV+NSIIKPTYMLTYESA+ELL LNL EEAELKILSEAA LRL WR
Sbjct: 501 SVVLHSDGSIAEYSVENSIIKPTYMLTYESASELLSLNLVEEAELKILSEAATLRLAWRR 560
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
QQGAID A+LETRIKVANPEDPEP INLYVE+QADPAMRLVSEMMILCGE IAT+GS NN
Sbjct: 561 QQGAIDMASLETRIKVANPEDPEPEINLYVENQADPAMRLVSEMMILCGEVIATFGSRNN 620
Query: 401 LALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFT 460
+ LPYRGQPQ+NIDVSAFAHLPEGPVRSSAIV+ MRAA IDFRKP+ HG+LG+P YVQFT
Sbjct: 621 IPLPYRGQPQTNIDVSAFAHLPEGPVRSSAIVRTMRAAEIDFRKPMPHGILGIPCYVQFT 680
Query: 461 SPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEF 520
SPIRRY+DLLAHYQVKA L+G+SPP+S GQLEGMA+ VN+ T++ARRLS+ SLRYWI+E+
Sbjct: 681 SPIRRYLDLLAHYQVKAFLKGDSPPYSHGQLEGMAATVNINTKLARRLSSVSLRYWILEY 740
Query: 521 LRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDD 580
LRRQPKE +YRALILRFIKDR A LLLVEVG+QA+AWVS+G QIGDEV+V+VE+AHPRDD
Sbjct: 741 LRRQPKENRYRALILRFIKDRNALLLLVEVGIQASAWVSLGVQIGDEVQVRVEDAHPRDD 800
Query: 581 IIYLKEVVR 589
++ LKE+++
Sbjct: 801 VLSLKEIIQ 809
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 125/187 (66%), Gaps = 20/187 (10%)
Query: 1 MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLN 60
+MA R VN+ S+FRS+ PPL +F R S L F P R Q
Sbjct: 26 IMAFRTVNTFSVFRSSLSPPLSAF---------------RWSSKLRFSSPLLRHRYQIFK 70
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVS-----SGELLEDKLENQVLQKGLL 115
G + S +S+ +++++EL A R+R RV A K+ SGE+ EDKL N+ L +GLL
Sbjct: 71 TGGGRLYSFYSVFENIIEELEAPRRRKRVSATAKMGLVGMGSGEVTEDKLVNRTLDRGLL 130
Query: 116 LEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFL 175
LEFKKDS+RVLLAVAQ+PDGKKNWMV+DQNG S SIKPQQ+T++VPGVE FDH +I++F+
Sbjct: 131 LEFKKDSERVLLAVAQKPDGKKNWMVFDQNGVSSSIKPQQITYIVPGVENFDHTEIADFI 190
Query: 176 QKAEDNL 182
+KA+DNL
Sbjct: 191 KKAQDNL 197
>gi|297740364|emb|CBI30546.3| unnamed protein product [Vitis vinifera]
Length = 720
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/406 (84%), Positives = 383/406 (94%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
++RKDLTHLKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT I+PGS+ D++AM
Sbjct: 315 VDRKDLTHLKVYAIDVDEADELDDALSATRLLDGRIKVWIHVADPTSLIQPGSIVDREAM 374
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRGTS+FLPTATYPMFPEKLAMEGMSL+QGE+CNAVTVSVVLHSDGSIAE +VDNSIIKP
Sbjct: 375 KRGTSIFLPTATYPMFPEKLAMEGMSLKQGELCNAVTVSVVLHSDGSIAECTVDNSIIKP 434
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYMLTYESA+ELLHLNLEEE ELKILSEAAALRL+WR QGAIDT+TLETRIKVANP+DP
Sbjct: 435 TYMLTYESASELLHLNLEEEVELKILSEAAALRLRWRRNQGAIDTSTLETRIKVANPDDP 494
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
EP INLYVEDQADPAMRLV+EMMILCGEA+ATYGS NN+ LPYRGQPQSN+D SAFAHLP
Sbjct: 495 EPSINLYVEDQADPAMRLVTEMMILCGEAVATYGSCNNIPLPYRGQPQSNVDTSAFAHLP 554
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
EGPVRSSA+VKI+RAA +DFRKP+RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA LRG+
Sbjct: 555 EGPVRSSALVKILRAAEMDFRKPIRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAFLRGD 614
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
SPPFSAGQ+EGMA+ VNM R+A+RL ++SLRYWI+EF+RRQPKE+++RAL+LRFIKDR
Sbjct: 615 SPPFSAGQMEGMAASVNMHARLAKRLCSSSLRYWILEFIRRQPKEKKFRALVLRFIKDRI 674
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AALLL+EVGLQA+AWVS+G QIGDEVEVKVEEAHPRDD++ LKEV
Sbjct: 675 AALLLMEVGLQASAWVSLGKQIGDEVEVKVEEAHPRDDVLSLKEVT 720
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 77/109 (70%), Positives = 95/109 (87%), Gaps = 3/109 (2%)
Query: 77 MQELVAIRKRLRVFAKVKV---SSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRP 133
M+EL A RKR R++A K+ SSG+LLEDKL+NQVLQKGLLLEF+KDS+RVLLAVAQ+
Sbjct: 1 MEELHASRKRKRIYASTKMGLTSSGQLLEDKLKNQVLQKGLLLEFRKDSERVLLAVAQKA 60
Query: 134 DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNL 182
DGKKNWMV+DQNG + SIKPQQVT++VPG++ FD +ISNF+QKA+DNL
Sbjct: 61 DGKKNWMVFDQNGVTSSIKPQQVTYIVPGIDNFDQTEISNFIQKAQDNL 109
>gi|225440376|ref|XP_002266667.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Vitis
vinifera]
Length = 792
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/406 (84%), Positives = 383/406 (94%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
++RKDLTHLKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT I+PGS+ D++AM
Sbjct: 387 VDRKDLTHLKVYAIDVDEADELDDALSATRLLDGRIKVWIHVADPTSLIQPGSIVDREAM 446
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRGTS+FLPTATYPMFPEKLAMEGMSL+QGE+CNAVTVSVVLHSDGSIAE +VDNSIIKP
Sbjct: 447 KRGTSIFLPTATYPMFPEKLAMEGMSLKQGELCNAVTVSVVLHSDGSIAECTVDNSIIKP 506
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYMLTYESA+ELLHLNLEEE ELKILSEAAALRL+WR QGAIDT+TLETRIKVANP+DP
Sbjct: 507 TYMLTYESASELLHLNLEEEVELKILSEAAALRLRWRRNQGAIDTSTLETRIKVANPDDP 566
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
EP INLYVEDQADPAMRLV+EMMILCGEA+ATYGS NN+ LPYRGQPQSN+D SAFAHLP
Sbjct: 567 EPSINLYVEDQADPAMRLVTEMMILCGEAVATYGSCNNIPLPYRGQPQSNVDTSAFAHLP 626
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
EGPVRSSA+VKI+RAA +DFRKP+RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA LRG+
Sbjct: 627 EGPVRSSALVKILRAAEMDFRKPIRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAFLRGD 686
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
SPPFSAGQ+EGMA+ VNM R+A+RL ++SLRYWI+EF+RRQPKE+++RAL+LRFIKDR
Sbjct: 687 SPPFSAGQMEGMAASVNMHARLAKRLCSSSLRYWILEFIRRQPKEKKFRALVLRFIKDRI 746
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AALLL+EVGLQA+AWVS+G QIGDEVEVKVEEAHPRDD++ LKEV
Sbjct: 747 AALLLMEVGLQASAWVSLGKQIGDEVEVKVEEAHPRDDVLSLKEVT 792
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 117/184 (63%), Positives = 148/184 (80%), Gaps = 6/184 (3%)
Query: 2 MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLNR 61
MAVRAVN+CS+FRS + PPL F+ C +HF + Q + + NLG P CR++R FL+
Sbjct: 1 MAVRAVNTCSIFRSTSSPPLYPFR--CRLHHFGAFQCK-SYPNLGLHFPICRTDRVFLSH 57
Query: 62 SGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV---SSGELLEDKLENQVLQKGLLLEF 118
G QSCSV+SLV+SVM+EL A RKR R++A K+ SSG+LLEDKL+NQVLQKGLLLEF
Sbjct: 58 GGVQSCSVYSLVESVMEELHASRKRKRIYASTKMGLTSSGQLLEDKLKNQVLQKGLLLEF 117
Query: 119 KKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKA 178
+KDS+RVLLAVAQ+ DGKKNWMV+DQNG + SIKPQQVT++VPG++ FD +ISNF+QKA
Sbjct: 118 RKDSERVLLAVAQKADGKKNWMVFDQNGVTSSIKPQQVTYIVPGIDNFDQTEISNFIQKA 177
Query: 179 EDNL 182
+DNL
Sbjct: 178 QDNL 181
>gi|356566110|ref|XP_003551278.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Glycine max]
Length = 783
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/429 (75%), Positives = 382/429 (89%), Gaps = 6/429 (1%)
Query: 167 DHKD------ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKV 220
DH D S L ++ + ++RK+LT LKVYAIDVDEADELDDALSA +LQDGRIKV
Sbjct: 354 DHSDEIISAAQSLLLDSSDPDEIDRKNLTDLKVYAIDVDEADELDDALSATKLQDGRIKV 413
Query: 221 YIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV 280
+IHVADPT+Y++PGS+ D++AM+RGTSVFLPTATY MFPE LAM GMSLRQGE+CNAVTV
Sbjct: 414 WIHVADPTRYVQPGSIVDREAMRRGTSVFLPTATYSMFPENLAMGGMSLRQGELCNAVTV 473
Query: 281 SVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRL 340
SVVLH+DGSIAEYSV NS+IKPTYMLTYESA+ELLHLNL+EE EL+ILSEAA LR WR
Sbjct: 474 SVVLHNDGSIAEYSVFNSVIKPTYMLTYESASELLHLNLQEEGELRILSEAANLRSNWRR 533
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
QQGAI+TATL+TRIKV+NPEDPEP + LYVE+QADPAMRLVSEMMILCGEA+AT+GS N+
Sbjct: 534 QQGAIETATLDTRIKVSNPEDPEPSMKLYVENQADPAMRLVSEMMILCGEAVATFGSRND 593
Query: 401 LALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFT 460
+ LPYRGQPQS+++VS F+HLPEGPVRS A+V++MRAA IDFRKP RHGVLG+PGYVQFT
Sbjct: 594 IPLPYRGQPQSDMNVSEFSHLPEGPVRSFALVRVMRAAEIDFRKPARHGVLGIPGYVQFT 653
Query: 461 SPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEF 520
SPIRRY+DLLAHYQVKA LRG+ PPF+AG+LEG+A++VN R R+L ++SLRYWI+E+
Sbjct: 654 SPIRRYLDLLAHYQVKAFLRGKPPPFTAGKLEGIAAVVNENVRTVRKLCSSSLRYWILEY 713
Query: 521 LRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDD 580
LRRQPKER YRAL+LRF+KDR AALLL+EVG QA+AW+ VG QIGDEVEVKVEEAHPRDD
Sbjct: 714 LRRQPKERTYRALVLRFLKDRIAALLLLEVGFQASAWIPVGMQIGDEVEVKVEEAHPRDD 773
Query: 581 IIYLKEVVR 589
I++LKEVV+
Sbjct: 774 ILFLKEVVK 782
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 125/188 (66%), Gaps = 24/188 (12%)
Query: 1 MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLN 60
MMAVRAV SCS+FR ++ PPL S ++ ++ +RS R +L R A
Sbjct: 1 MMAVRAVTSCSLFRPSS-PPLFSSALR--FFPYRS----RGPPSLSLRYGA--------- 44
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSS------GELLEDKLENQVLQKGL 114
+Q+ SV SL +S+M+EL A RKR + S+ EL ED+L N LQKGL
Sbjct: 45 --HTQTRSVQSLFNSLMEELRAARKRRQKRVSAAASNRMGLLNEELAEDRLVNHSLQKGL 102
Query: 115 LLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNF 174
LLEFKKDSDRVLLAVAQRPDGKKNWMV DQNG + SIKPQQVT++VPG++ FD DI++F
Sbjct: 103 LLEFKKDSDRVLLAVAQRPDGKKNWMVSDQNGFTSSIKPQQVTYIVPGIDNFDQADIADF 162
Query: 175 LQKAEDNL 182
QKA+DN+
Sbjct: 163 AQKAQDNM 170
>gi|42567593|ref|NP_195845.2| Ribonuclease II/R family protein [Arabidopsis thaliana]
gi|75127176|sp|Q6NQJ6.1|RNR1_ARATH RecName: Full=Ribonuclease II, chloroplastic/mitochondrial;
Short=AtmtRNaseII; Short=RNase II; AltName: Full=Protein
EMBRYO DEFECTIVE 2730; AltName: Full=Ribonucleotide
reductase 1; Flags: Precursor
gi|34222082|gb|AAQ62877.1| At5g02250 [Arabidopsis thaliana]
gi|51970908|dbj|BAD44146.1| ribonuclease II-like protein [Arabidopsis thaliana]
gi|332003067|gb|AED90450.1| Ribonuclease II/R family protein [Arabidopsis thaliana]
Length = 803
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/414 (77%), Positives = 370/414 (89%), Gaps = 1/414 (0%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+ ++ + + R DLTHLKVYAIDVDEADELDDALSA RLQDGRIK++IHVADP +Y+ PGS
Sbjct: 390 ESSDIDAVRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGS 449
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D++A +RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG I EYSV
Sbjct: 450 KVDREARRRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCITEYSV 509
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
DNSII+PTYMLTYESA+ELLHLNLEEEAELK+LSEAA +R QWR +QGA+DT TLETRIK
Sbjct: 510 DNSIIRPTYMLTYESASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETRIK 569
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
V NPEDPEP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNIDV
Sbjct: 570 VVNPEDPEPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNIDV 629
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
SAFAHLPEGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHYQ+
Sbjct: 630 SAFAHLPEGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHYQI 689
Query: 476 KACLR-GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
KA LR G++ PFSAG+LEG+A+ VNMQ+++ R+LSNT LRYW+IEFLRRQ K ++Y AL+
Sbjct: 690 KAFLRGGDNFPFSAGELEGIAASVNMQSKVVRKLSNTGLRYWVIEFLRRQEKGKKYTALV 749
Query: 535 LRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
LRF+KDR A+LLLVEVG QA AWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 750 LRFVKDRIASLLLVEVGFQATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 803
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 135/194 (69%), Gaps = 15/194 (7%)
Query: 1 MMAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQ 57
MM+VRA+N CS+ R SA PP+ F+ + R+ LR S L P R++R+
Sbjct: 1 MMSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLR-EFSKLRLNFPLIRADRR 57
Query: 58 FLNRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQ 108
FL S + SCS +HSLV+SV +EL +I +R +RV A VKV S GE+LEDKL NQ
Sbjct: 58 FLGNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQ 117
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
L+ GLLLEFKKD+DRVLLAV R DGKKNWMV+DQNG SCSIKPQQ+T++VP V FDH
Sbjct: 118 ELEAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQNGVSCSIKPQQITYIVPNVYNFDH 177
Query: 169 KDISNFLQKAEDNL 182
+++FLQ+A+DNL
Sbjct: 178 TGLTDFLQRAQDNL 191
>gi|297806163|ref|XP_002870965.1| EMB2730 [Arabidopsis lyrata subsp. lyrata]
gi|297316802|gb|EFH47224.1| EMB2730 [Arabidopsis lyrata subsp. lyrata]
Length = 803
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 318/414 (76%), Positives = 371/414 (89%), Gaps = 1/414 (0%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+ ++ + + R DLTHLKVYAIDVDEADELDDALSA RLQDGRIK++IHVADP +Y+ PGS
Sbjct: 390 ESSDIDAVRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGS 449
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D++A +RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG IA+YSV
Sbjct: 450 KVDREARRRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCIADYSV 509
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+NSII+PTYMLTYESA+ELLHLNLEEEAELK+LSEAA +R QWR +QGA+DT TLETRIK
Sbjct: 510 ENSIIRPTYMLTYESASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETRIK 569
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
V NPEDPEP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNIDV
Sbjct: 570 VVNPEDPEPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNIDV 629
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
SAFAHLPEGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHYQ+
Sbjct: 630 SAFAHLPEGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHYQI 689
Query: 476 KACLR-GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
KA LR G++ PFSAG+LEG+A+ VNMQ+++ R+LSN+ LRYW+IEFLRRQ K ++Y ALI
Sbjct: 690 KAFLRGGDNFPFSAGELEGIAASVNMQSKVVRKLSNSGLRYWVIEFLRRQEKGKKYTALI 749
Query: 535 LRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
LRF+KDR A+LLLVEVG QA AWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 750 LRFVKDRIASLLLVEVGFQATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 803
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 135/194 (69%), Gaps = 15/194 (7%)
Query: 1 MMAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQ 57
M++VRA+N CS+ R SA PP+ F+ + R+ LR S LG P RS R+
Sbjct: 1 MISVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLR-EFSKLGLNFPLLRSNRR 57
Query: 58 FLNRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQ 108
L + + SCS +HSLV+SV +EL +I +R +RV A VKV S GE+LEDKL NQ
Sbjct: 58 SLGNNDAPSCSSCIHSLVESVSEELGSISRRKGSRIRVRASVKVKLTSYGEVLEDKLVNQ 117
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
L+ GLLLEFKKD++RVLLAV R DGKKNWMV+DQNG +CSIKPQQ+T++VPGV FDH
Sbjct: 118 ELEAGLLLEFKKDAERVLLAVVHRRDGKKNWMVFDQNGVTCSIKPQQITYIVPGVYNFDH 177
Query: 169 KDISNFLQKAEDNL 182
+++FLQ+A+DNL
Sbjct: 178 TGLTDFLQRAQDNL 191
>gi|7406421|emb|CAB85530.1| ribonuclease II-like protein [Arabidopsis thaliana]
Length = 782
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 300/414 (72%), Positives = 350/414 (84%), Gaps = 22/414 (5%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+ ++ + + R DLTHLKVYAIDVDEADELDDALSA RLQDGRIK++IHVADP +Y+ PGS
Sbjct: 390 ESSDIDAVRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGS 449
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D++A +RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG
Sbjct: 450 KVDREARRRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGC------ 503
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
A+ELLHLNLEEEAELK+LSEAA +R QWR +QGA+DT TLETRIK
Sbjct: 504 ---------------ASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETRIK 548
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
V NPEDPEP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNIDV
Sbjct: 549 VVNPEDPEPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNIDV 608
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
SAFAHLPEGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHYQ+
Sbjct: 609 SAFAHLPEGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHYQI 668
Query: 476 KACLR-GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
KA LR G++ PFSAG+LEG+A+ VNMQ+++ R+LSNT LRYW+IEFLRRQ K ++Y AL+
Sbjct: 669 KAFLRGGDNFPFSAGELEGIAASVNMQSKVVRKLSNTGLRYWVIEFLRRQEKGKKYTALV 728
Query: 535 LRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
LRF+KDR A+LLLVEVG QA AWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 729 LRFVKDRIASLLLVEVGFQATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 782
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 135/194 (69%), Gaps = 15/194 (7%)
Query: 1 MMAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQ 57
MM+VRA+N CS+ R SA PP+ F+ + R+ LR S L P R++R+
Sbjct: 1 MMSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLR-EFSKLRLNFPLIRADRR 57
Query: 58 FLNRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQ 108
FL S + SCS +HSLV+SV +EL +I +R +RV A VKV S GE+LEDKL NQ
Sbjct: 58 FLGNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQ 117
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
L+ GLLLEFKKD+DRVLLAV R DGKKNWMV+DQNG SCSIKPQQ+T++VP V FDH
Sbjct: 118 ELEAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQNGVSCSIKPQQITYIVPNVYNFDH 177
Query: 169 KDISNFLQKAEDNL 182
+++FLQ+A+DNL
Sbjct: 178 TGLTDFLQRAQDNL 191
>gi|218189347|gb|EEC71774.1| hypothetical protein OsI_04386 [Oryza sativa Indica Group]
gi|222619521|gb|EEE55653.1| hypothetical protein OsJ_04037 [Oryza sativa Japonica Group]
Length = 774
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/404 (71%), Positives = 347/404 (85%), Gaps = 1/404 (0%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 370 RKDLSTLKVYAIDVDEADELDDALSAARLPDGRIKVWIHVADPTSLVQPRSIIDREAMHR 429
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPTAT+PMFPE+LAM MSL+QG C +VTVSV+L DGSIAEYS++NSIIKPTY
Sbjct: 430 GTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVSVILQPDGSIAEYSIENSIIKPTY 489
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
MLTYESATELL++NLEEE EL+IL EAA+LR QWR QG+IDTA +E RIKVANP+DPEP
Sbjct: 490 MLTYESATELLYMNLEEEEELRILQEAASLRAQWRRSQGSIDTAMIEPRIKVANPDDPEP 549
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
INLYVEDQ++PAM+LVSEMMILCGEA+A +GS NN+ALPYRG PQSN VSAF HLPEG
Sbjct: 550 NINLYVEDQSNPAMQLVSEMMILCGEAVAAFGSDNNIALPYRGHPQSNTAVSAFTHLPEG 609
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P RS A + ++RAA +DF+KPV HGVLG+PGYVQFTSPIRRY+DLLAHYQ+KA LRGESP
Sbjct: 610 PARSFANISVLRAAEMDFQKPVPHGVLGIPGYVQFTSPIRRYVDLLAHYQIKAFLRGESP 669
Query: 485 PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAA 544
P+SAG LEGM I +M ++ARRL + +LRYW++E+LRRQPK ++Y+ALIL+FIKDR A
Sbjct: 670 PYSAGDLEGMTFIASMHVKVARRLHSNNLRYWLLEYLRRQPKGKKYKALILKFIKDRLAT 729
Query: 545 LLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
LL++EVG+QA A VS G ++GDEV V VE AHPRDDI+ + E+
Sbjct: 730 LLVIEVGIQATAVVSTG-KVGDEVSVVVEAAHPRDDILSVTEIT 772
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 106/157 (67%), Gaps = 6/157 (3%)
Query: 48 RLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLE 106
R + R+ F G + VH LVDSV++EL + ++R RV AK+ + + EL ++K++
Sbjct: 30 RPDSARAGWHFSLYGGCRGRQVHGLVDSVLEELRS-QRRGRVSAKIGLQGTKELSDNKID 88
Query: 107 NQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+ LQKGLLLEF+KDS+R LLAV +RPDGKKNW V DQNG SIKPQQVT+V+PG+ +
Sbjct: 89 KRTLQKGLLLEFQKDSERFLLAVVERPDGKKNWKVTDQNGILSSIKPQQVTYVIPGIINY 148
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADE 203
+H I F++KA+D L D T L+ +++ E D+
Sbjct: 149 NHSRIDEFIKKAQDLL----DPTVLECAWMELSENDK 181
>gi|242059199|ref|XP_002458745.1| hypothetical protein SORBIDRAFT_03g039500 [Sorghum bicolor]
gi|241930720|gb|EES03865.1| hypothetical protein SORBIDRAFT_03g039500 [Sorghum bicolor]
Length = 782
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/404 (72%), Positives = 348/404 (86%), Gaps = 1/404 (0%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 373 RKDLSTLKVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCLVKPRSIIDREAMHR 432
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPTAT PMFPE+LAM MSL+QG+ C +VTVSV+L+SDGSIAEY+++NS+IKPTY
Sbjct: 433 GTSIFLPTATIPMFPERLAMNAMSLQQGKECKSVTVSVILNSDGSIAEYTLENSVIKPTY 492
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
MLTYESATELL++NLEEE EL+IL EAA++R QWR QG+IDTA +E RIKV+NP+DPEP
Sbjct: 493 MLTYESATELLYMNLEEEEELRILQEAASIRAQWRHSQGSIDTAMIEPRIKVSNPDDPEP 552
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
INLYVEDQA+PAM+LVSEMMILCGEA+A +GS NNL LPYRG PQSN VS F+HLPEG
Sbjct: 553 NINLYVEDQANPAMQLVSEMMILCGEAVAAFGSDNNLPLPYRGHPQSNTAVSVFSHLPEG 612
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P RS A + ++RAA +DF+KPV HGVLG+PGYVQFTSPIRRY+DLLAHYQVKA LRG+SP
Sbjct: 613 PARSFANISVLRAAEMDFQKPVPHGVLGIPGYVQFTSPIRRYVDLLAHYQVKAFLRGDSP 672
Query: 485 PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAA 544
P+SAG LEGM I +M ++ARRL + SLRYW++E+LRRQPK R+YRALIL+FIKDR A
Sbjct: 673 PYSAGDLEGMTFIASMHVKVARRLHSNSLRYWLLEYLRRQPKGRKYRALILKFIKDRMGA 732
Query: 545 LLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
LLLVEVG+Q +S G ++GDEV V VE AHPRDDI+ ++EVV
Sbjct: 733 LLLVEVGMQITTTISRG-KVGDEVSVTVETAHPRDDILSVREVV 775
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 101/142 (71%), Gaps = 6/142 (4%)
Query: 63 GSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLENQVLQKGLLLEFKKD 121
G +S HS+VDSV+ EL R+R+RV AK+ + + EL ++K++ + LQKGLLLEF+KD
Sbjct: 48 GCRSRLAHSIVDSVLDEL-RYRRRVRVSAKIGLQGTKELPDNKIDKRTLQKGLLLEFQKD 106
Query: 122 SDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDN 181
S+R LLAV +RPDGKKNWMV DQNG SIKPQQVT+VVPG+ FD+ I FL+K +D
Sbjct: 107 SERSLLAVVERPDGKKNWMVTDQNGILSSIKPQQVTYVVPGIMNFDYSRIDEFLEKTQDL 166
Query: 182 LLNRKDLTHLKVYAIDVDEADE 203
L D T L+ +++ E D+
Sbjct: 167 L----DPTVLECAWMELSEKDK 184
>gi|357134851|ref|XP_003569029.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Brachypodium
distachyon]
Length = 783
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 287/403 (71%), Positives = 347/403 (86%), Gaps = 1/403 (0%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT +++P S+ D++AM R
Sbjct: 377 RKDLSTLKVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCFLQPRSIIDREAMHR 436
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPTATYPMFPE+LAM MSL+QG C +V+VSV+L+ DGSIAEY ++NS+IKPTY
Sbjct: 437 GTSIFLPTATYPMFPERLAMNAMSLQQGTDCRSVSVSVILNPDGSIAEYKIENSVIKPTY 496
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
MLTYESATELL++NLEEE EL+IL EAA++R QWR QG+IDTA +E RIKVANP+DPEP
Sbjct: 497 MLTYESATELLYMNLEEEEELRILREAASIRAQWRCSQGSIDTAMIEPRIKVANPDDPEP 556
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
INLYVEDQ +PAM+LVSEMMILCGEA+A++GS N+L LPYRG PQ+N VSAFA+LPEG
Sbjct: 557 NINLYVEDQTNPAMQLVSEMMILCGEAVASFGSDNDLPLPYRGHPQNNTAVSAFAYLPEG 616
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P RS A + ++RAA +DFRKPV HGVLG+PGYVQFTSPIRRY+DLLAHYQVKA LRGESP
Sbjct: 617 PARSFASIALLRAAEMDFRKPVAHGVLGIPGYVQFTSPIRRYVDLLAHYQVKAFLRGESP 676
Query: 485 PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAA 544
P+SAG LEGM I +M ++AR+L + SLRYW++E+LRRQPK R+++ALIL+FIKDR A
Sbjct: 677 PYSAGDLEGMTFIASMHVKVARKLHSNSLRYWLLEYLRRQPKGRKFKALILKFIKDRMAT 736
Query: 545 LLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
LLLVEVG+QA V+ G ++GDEV V VE AHPRDDI+ + E+
Sbjct: 737 LLLVEVGIQATTVVAAG-KVGDEVSVVVEMAHPRDDILSVTEI 778
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 103/182 (56%), Gaps = 17/182 (9%)
Query: 2 MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLNR 61
MA RA + C C P V+ + R L L R G PA + R
Sbjct: 6 MAARAASGC-----CCCSPAVAL----AFSRLRPL-LSRAAVRQG---PAAAATG---GR 49
Query: 62 SGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLED-KLENQVLQKGLLLEFKK 120
+ S LVDSV++EL + R+ R A++ + + L D K++ + LQKG LLEF K
Sbjct: 50 FALSTTSRGRLVDSVLEELRSSRRAARFSARIGLHGTKQLSDIKIDKRTLQKGWLLEFHK 109
Query: 121 DSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAED 180
DS+R LLAV +RPDGKKNW+V DQNG SIKPQQVT+VVPG FD I+ FL+KA+D
Sbjct: 110 DSERSLLAVVERPDGKKNWVVTDQNGILSSIKPQQVTYVVPGTMNFDSSKIAEFLEKAQD 169
Query: 181 NL 182
L
Sbjct: 170 LL 171
>gi|414879757|tpg|DAA56888.1| TPA: hypothetical protein ZEAMMB73_060871 [Zea mays]
Length = 650
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/404 (70%), Positives = 345/404 (85%), Gaps = 1/404 (0%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 241 RKDLSTLKVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCLVKPHSIIDREAMHR 300
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPT T+PMFPE+LAM MSL+QG+ C +VTVSV+L+ DGSIAEY+++NS+IKPTY
Sbjct: 301 GTSIFLPTTTFPMFPERLAMNSMSLQQGKECKSVTVSVILNLDGSIAEYTLENSVIKPTY 360
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
MLTYESATELL++NLEEE EL+IL EAA +R QWR QG+IDTA +E RIKV+NP+DPEP
Sbjct: 361 MLTYESATELLYMNLEEEEELRILQEAARIREQWRRSQGSIDTAMIEPRIKVSNPDDPEP 420
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
INLYVEDQA+PAM+LVSEMMILCGEA+A +G NNL LPYRG PQSN VS F+HLPEG
Sbjct: 421 NINLYVEDQANPAMQLVSEMMILCGEAVAAFGFDNNLPLPYRGHPQSNTAVSVFSHLPEG 480
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P RS A + ++RAA +DF+KPV HGVLG+PGYVQFTSPIRRY+DLLAHYQVKA LRG+SP
Sbjct: 481 PARSFANISVLRAAEMDFQKPVPHGVLGIPGYVQFTSPIRRYVDLLAHYQVKAFLRGDSP 540
Query: 485 PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAA 544
P+SAG LEGM I +M ++ARRL + SLRYW++E+LRRQPK R+YRALIL+F+KDR A
Sbjct: 541 PYSAGDLEGMTFIASMHVKVARRLHSNSLRYWLLEYLRRQPKGRKYRALILKFVKDRMGA 600
Query: 545 LLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
LLLVEVG+Q +S G ++GD+V V VE AHPRDDI+ ++EVV
Sbjct: 601 LLLVEVGMQVTTTISRG-KVGDQVSVTVETAHPRDDILSVREVV 643
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 150 SIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADE 203
SIKPQQVT+VVPG+ FD+ I FL+K + NLL D T L+ +++ E D+
Sbjct: 3 SIKPQQVTYVVPGIMNFDYSKIDEFLEKTQ-NLL---DPTILECAWMELSEKDK 52
>gi|414879754|tpg|DAA56885.1| TPA: hypothetical protein ZEAMMB73_060871 [Zea mays]
Length = 783
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/404 (70%), Positives = 345/404 (85%), Gaps = 1/404 (0%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 374 RKDLSTLKVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCLVKPHSIIDREAMHR 433
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPT T+PMFPE+LAM MSL+QG+ C +VTVSV+L+ DGSIAEY+++NS+IKPTY
Sbjct: 434 GTSIFLPTTTFPMFPERLAMNSMSLQQGKECKSVTVSVILNLDGSIAEYTLENSVIKPTY 493
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
MLTYESATELL++NLEEE EL+IL EAA +R QWR QG+IDTA +E RIKV+NP+DPEP
Sbjct: 494 MLTYESATELLYMNLEEEEELRILQEAARIREQWRRSQGSIDTAMIEPRIKVSNPDDPEP 553
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
INLYVEDQA+PAM+LVSEMMILCGEA+A +G NNL LPYRG PQSN VS F+HLPEG
Sbjct: 554 NINLYVEDQANPAMQLVSEMMILCGEAVAAFGFDNNLPLPYRGHPQSNTAVSVFSHLPEG 613
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P RS A + ++RAA +DF+KPV HGVLG+PGYVQFTSPIRRY+DLLAHYQVKA LRG+SP
Sbjct: 614 PARSFANISVLRAAEMDFQKPVPHGVLGIPGYVQFTSPIRRYVDLLAHYQVKAFLRGDSP 673
Query: 485 PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAA 544
P+SAG LEGM I +M ++ARRL + SLRYW++E+LRRQPK R+YRALIL+F+KDR A
Sbjct: 674 PYSAGDLEGMTFIASMHVKVARRLHSNSLRYWLLEYLRRQPKGRKYRALILKFVKDRMGA 733
Query: 545 LLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
LLLVEVG+Q +S G ++GD+V V VE AHPRDDI+ ++EVV
Sbjct: 734 LLLVEVGMQVTTTISRG-KVGDQVSVTVETAHPRDDILSVREVV 776
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 98/144 (68%), Gaps = 6/144 (4%)
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLENQVLQKGLLLEFK 119
R G +S HS+VD VM+EL + R+ AK+ + + EL ++K+ + LQKGLLLEF+
Sbjct: 47 RGGCRSRLAHSIVDLVMEELRSRRRVRVS-AKIGLQGTKELPDNKIVKRTLQKGLLLEFQ 105
Query: 120 KDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAE 179
KD +R LLAV +RPDGKKNWMV DQNG SIKPQQVT+VVPG+ FD+ I FL+K +
Sbjct: 106 KDPERSLLAVVERPDGKKNWMVTDQNGVMSSIKPQQVTYVVPGIMNFDYSKIDEFLEKTQ 165
Query: 180 DNLLNRKDLTHLKVYAIDVDEADE 203
NLL D T L+ +++ E D+
Sbjct: 166 -NLL---DPTILECAWMELSEKDK 185
>gi|255586753|ref|XP_002533996.1| ribonuclease II, putative [Ricinus communis]
gi|223526007|gb|EEF28385.1| ribonuclease II, putative [Ricinus communis]
Length = 731
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/416 (66%), Positives = 321/416 (77%), Gaps = 62/416 (14%)
Query: 174 FLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEP 233
L+ + + ++RKDLTHLKVYAIDVDEADELDDALSA +LQDGRIK++IHVADP +Y++P
Sbjct: 377 LLESVDPDKIHRKDLTHLKVYAIDVDEADELDDALSATKLQDGRIKIWIHVADPGRYVQP 436
Query: 234 GSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEY 293
GS D++AMKRGTSVFLPTATYPMFPEKLAM+GMSL+QGEVCNAV+VSVVLHSDG I +
Sbjct: 437 GSKIDREAMKRGTSVFLPTATYPMFPEKLAMDGMSLKQGEVCNAVSVSVVLHSDGWIDIW 496
Query: 294 SVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETR 353
+ +R+ GA++TATLETR
Sbjct: 497 ------------------------------------------IGYRM--GAVNTATLETR 512
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
IKVANPEDPEP INLYVE+QADPAMRLVSEMMILCGE +ATYGS NN+ LPYRGQPQSNI
Sbjct: 513 IKVANPEDPEPSINLYVENQADPAMRLVSEMMILCGEVVATYGSCNNIPLPYRGQPQSNI 572
Query: 414 DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHY 473
DVSAFAHLPEGPVRS+A+VKIMRAA DFRKPVRHG+LG+PGY
Sbjct: 573 DVSAFAHLPEGPVRSAAVVKIMRAAEFDFRKPVRHGILGIPGY----------------- 615
Query: 474 QVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRAL 533
VKA LRGE PPFSAGQLEGMAS++NMQ R+ R L N++LRYWIIEFL+RQPKER+YRAL
Sbjct: 616 -VKAVLRGEPPPFSAGQLEGMASMINMQARVVRSLCNSNLRYWIIEFLKRQPKERRYRAL 674
Query: 534 ILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 589
ILRFIKDR AALLLVEVG QA+AWVS G IGDE++V+V+EAHPRDD + L EVV+
Sbjct: 675 ILRFIKDRIAALLLVEVGFQASAWVSTGVHIGDEIQVQVKEAHPRDDFVSLTEVVQ 730
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/186 (59%), Positives = 138/186 (74%), Gaps = 10/186 (5%)
Query: 1 MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQF-L 59
MMAVRAVN+CS+ + PP F ++C + R Q SNL R P R E QF
Sbjct: 1 MMAVRAVNTCSILHFSKAPPF--FLVRCRFKTLRFCQY----SNLSSRRPIIRCESQFQF 54
Query: 60 NRSGSQSCSVHSLVDSVMQELVAIRK--RLRVFAKVKVS-SGELLEDKLENQVLQKGLLL 116
+ + +S SV SLVDSVM+EL ++RK R RV +K++ SGELL+DKL N+ L+KGLLL
Sbjct: 55 HGTNIRSFSVQSLVDSVMEELASLRKSRRKRVCPAIKLTGSGELLDDKLVNRPLEKGLLL 114
Query: 117 EFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQ 176
EFKKD+DR+LLAVA+RPDGKKNWMVYDQNG + SIKPQQVT++VPGVE FDH +ISNF+Q
Sbjct: 115 EFKKDTDRILLAVARRPDGKKNWMVYDQNGVTSSIKPQQVTYIVPGVENFDHTEISNFVQ 174
Query: 177 KAEDNL 182
KA+DNL
Sbjct: 175 KAQDNL 180
>gi|168012160|ref|XP_001758770.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689907|gb|EDQ76276.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 717
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/409 (54%), Positives = 293/409 (71%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+ NL+NR DLTHLKVY ID ++ADE+DD LSA+RL DGRIKV+IHVADPT+++ P L D
Sbjct: 309 DTNLVNRVDLTHLKVYTIDSEDADEIDDGLSAIRLPDGRIKVWIHVADPTRWVPPMHLLD 368
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A +R TS++LPT PMFP LA MSLRQG A+TVS++ H DGSIAE V S
Sbjct: 369 KEAKRRSTSIYLPTGAVPMFPMNLASTVMSLRQGHEACALTVSIIFHCDGSIAESEVMCS 428
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
IKPTY L+Y++A ELL +N+EEEAEL +L+E A R +WR QGAID E IKV +
Sbjct: 429 TIKPTYRLSYDNAAELLSMNVEEEAELYLLAEVAKSRREWRNSQGAIDATVPEASIKVLD 488
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
P+ P+P I + V DQA PA +LVSEMMI CGEA+A +G N++LPYRGQ I
Sbjct: 489 PDSPKPSIIMSVVDQAGPASQLVSEMMIACGEALAAFGEEKNISLPYRGQASQEIPAGDM 548
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
+PEGP R+ A+ + + A + F KP+ H LG+ GYVQFTSPIRRY DLLAHYQVKA
Sbjct: 549 EAIPEGPCRALALRRYLGRADMSFMKPISHAALGVRGYVQFTSPIRRYSDLLAHYQVKAI 608
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
LRGE PPFS+ +E + ++VN+Q+R AR+L +S RYW IE+LRRQP+ Q++AL+LRF+
Sbjct: 609 LRGEPPPFSSAYVEAVMAVVNLQSRQARKLQVSSTRYWAIEYLRRQPRGTQFQALVLRFV 668
Query: 539 KDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++ +L+ ++G+QA A + +G E+ V VE A+PR+D I L++V
Sbjct: 669 REGEPLVLIEKLGIQAQANLVRNTAVGSEITVIVEAAYPRNDFIILRQV 717
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 55/90 (61%)
Query: 90 FAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASC 149
AK + + + K L+KG+LLEF K+S + +LAV QRP+GKKNW+ DQ
Sbjct: 12 IAKAAIVNETTTDVKHSEGTLRKGVLLEFSKESGKYVLAVIQRPEGKKNWVAADQASLKL 71
Query: 150 SIKPQQVTFVVPGVEKFDHKDISNFLQKAE 179
PQQ+TF+VPG E F DIS F+ KA+
Sbjct: 72 PYSPQQITFIVPGAEDFKTADISAFINKAQ 101
>gi|302769946|ref|XP_002968392.1| hypothetical protein SELMODRAFT_145357 [Selaginella moellendorffii]
gi|300164036|gb|EFJ30646.1| hypothetical protein SELMODRAFT_145357 [Selaginella moellendorffii]
Length = 668
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/404 (50%), Positives = 268/404 (66%), Gaps = 26/404 (6%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+ N +R DLT +KVY ID D +E+DD LSA L DGR+K++IH+ADPT+++EP + +
Sbjct: 271 DQNKDSRVDLTAMKVYTIDSDSTEEIDDGLSATELPDGRVKIWIHIADPTRWVEPEHIIE 330
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A RGT+V+LP T PMFP LA MSLRQ C AV+VSV+L DGSIAE SV +S
Sbjct: 331 REAKHRGTTVYLPEKTIPMFPMNLATGPMSLRQNTECCAVSVSVILDKDGSIAESSVCSS 390
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
+IKP+ L+Y+SATEL+ L+EE EL +L++AA LR +WRL QGA+D +T + +KV N
Sbjct: 391 VIKPSMRLSYDSATELIMYQLDEERELNLLAKAARLRYEWRLSQGAVDLSTRQIEVKVTN 450
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
P+ EP I L V D P+ +LVSEMMILCGEAIA YG+ LALPYRGQ
Sbjct: 451 PDSFEPEIKLQVIDMTSPSGQLVSEMMILCGEAIAAYGNEKILALPYRGQSD-------- 502
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
A ++ KP++H LGLPGYVQFTSPIRRY DLLAHYQVKA
Sbjct: 503 -----------------MAVEMNCTKPLQHSSLGLPGYVQFTSPIRRYSDLLAHYQVKAA 545
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
LR +SPP S+ QLE + N++T+ AR+L N S RYW+IE+LRR+P++ Y A ++R +
Sbjct: 546 LRKKSPPLSSSQLEAAIMLANLKTKEARKLGNASSRYWLIEYLRRRPRDELYEASVVR-V 604
Query: 539 KDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDII 582
KD + + EVGL + +V + GD V V V A+PR DI+
Sbjct: 605 KDGQVVVSIKEVGLHTSVSTNVKLEAGDAVRVIVAAANPRKDIL 648
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 114 LLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISN 173
+L+E KD +++ AV RP+GKKNW+ DQ G S S+KP +V +VVP VE F +DI
Sbjct: 1 MLVELVKDG-KLVCAVVDRPEGKKNWIAIDQYGNSHSVKPGKVRYVVPDVETFKPEDIVE 59
Query: 174 FLQKAE 179
FL++ E
Sbjct: 60 FLKQTE 65
>gi|302774276|ref|XP_002970555.1| hypothetical protein SELMODRAFT_147137 [Selaginella moellendorffii]
gi|300162071|gb|EFJ28685.1| hypothetical protein SELMODRAFT_147137 [Selaginella moellendorffii]
Length = 669
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/405 (50%), Positives = 269/405 (66%), Gaps = 27/405 (6%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+ N +R DLT +KVY ID D +E+DD LSA L DGR+K++IH+ADPT+++EP + +
Sbjct: 271 DQNKDSRVDLTAMKVYTIDSDSTEEIDDGLSATELPDGRVKIWIHIADPTRWVEPEHIIE 330
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A RGT+V+LP T PMFP LA MSLRQ C AV+VSV+L DGSIAE SV +S
Sbjct: 331 REAKHRGTTVYLPEKTIPMFPMNLATGPMSLRQNTECCAVSVSVILDKDGSIAESSVCSS 390
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRL-QQGAIDTATLETRIKVA 357
+IKP+ L+Y+SATEL+ L+EE EL +L++AA LR +WRL QQGA+D +T + +KV
Sbjct: 391 VIKPSMRLSYDSATELIMYQLDEERELNLLAKAARLRYEWRLSQQGAVDLSTRQIEVKVT 450
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA 417
NP+ EP I L V D P+ +LVSEMMILCGEAIA YG+ LALPYRGQ
Sbjct: 451 NPDSFEPEIKLQVIDMTSPSGQLVSEMMILCGEAIAAYGNEKILALPYRGQSD------- 503
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
A ++ KP++H LGLPGYVQFTSPIRRY DLLAHYQVKA
Sbjct: 504 ------------------MAVEMNCTKPLQHSSLGLPGYVQFTSPIRRYSDLLAHYQVKA 545
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
LR +SPP S+ QLE + N++T+ AR+L N S RYW+IE+LRR+P++ Y A ++R
Sbjct: 546 ALRKKSPPLSSSQLEAAIMLANLKTKEARKLGNASSRYWLIEYLRRRPRDELYEASVVR- 604
Query: 538 IKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDII 582
+KD + + EVGL + +V + GD V V V A+PR DI+
Sbjct: 605 VKDGQVVVSIKEVGLHTSVSTNVKLEAGDAVRVIVAAANPRKDIL 649
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 114 LLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISN 173
+L+E KD +++ AV RP+GKKNW+ DQ G S S+KP +V +VVP VE F +DI
Sbjct: 1 MLVELVKDG-KLVCAVVDRPEGKKNWIAIDQYGNSHSVKPGKVRYVVPDVETFKPEDIVE 59
Query: 174 FLQKAE 179
FL++ E
Sbjct: 60 FLKQTE 65
>gi|409990691|ref|ZP_11274032.1| ribonuclease II, partial [Arthrospira platensis str. Paraca]
gi|409938453|gb|EKN79776.1| ribonuclease II, partial [Arthrospira platensis str. Paraca]
Length = 472
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 252/407 (61%), Gaps = 11/407 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLKVY ID + E+DD +S L+DG K++IH+ADPT+ I+PG D +A +R
Sbjct: 66 RFDLTHLKVYTIDDESTREIDDGVSLEFLEDGTQKIWIHIADPTRLIQPGDELDLEARRR 125
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+LPT PMFP +LA MSL QG++C A++ VVL+ DGS+ +YS+ SIIKPTY
Sbjct: 126 TTSVYLPTGMIPMFPSELATGPMSLVQGKICCALSFGVVLNEDGSVKDYSIHTSIIKPTY 185
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ E+LHL ++ E E++IL + A LR QWR QGAI E+ IKV D +
Sbjct: 186 RLTYDDVDEMLHLGIKAEPEIEILGKFAKLRQQWRSSQGAISIYMPESMIKV----DGDE 241
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE- 423
+I ++D + ++V+EMMIL GE A YG +NLALPYR QPQ +
Sbjct: 242 VIVKLLDDSL--SRQMVAEMMILTGEVAARYGQEHNLALPYRSQPQPELPPEEELLQLPA 299
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
G VR+ A+ + M + + P RH L L Y Q TSPIRRY DLLAH+Q+KA LRGE
Sbjct: 300 GAVRACALRRYMPRSEVSL-TPARHASLALETYTQVTSPIRRYSDLLAHFQIKAHLRGEE 358
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT- 542
P FS Q++ M + + A ++ + RYW +E+LRRQ E + A++LR++++ +
Sbjct: 359 PAFSVEQMQEMVMSLGPAVKEASKVERETNRYWSLEYLRRQADE-VWEAILLRWLREDSN 417
Query: 543 -AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
++L E+GL+ + +GD EVKV + PR D+I +E++
Sbjct: 418 LGLVMLEELGLELPMRFNRDIALGDRFEVKVTHSDPRQDVIQFQEII 464
>gi|427729568|ref|YP_007075805.1| exoribonuclease R [Nostoc sp. PCC 7524]
gi|427365487|gb|AFY48208.1| exoribonuclease R [Nostoc sp. PCC 7524]
Length = 710
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/411 (41%), Positives = 246/411 (59%), Gaps = 9/411 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ NR DLTHLKVY ID + E+DD LS L DGR ++++H+ADPT+++ P D
Sbjct: 298 DSDTNRLDLTHLKVYTIDDESTTEIDDGLSWEILSDGRDRLWVHIADPTRWLAPEDDLDL 357
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KRG++V+LPT PMFPE LA MSL QG++C A++ ++L +DG++ ++++ S+
Sbjct: 358 EARKRGSTVYLPTGMVPMFPEVLATGPMSLVQGKICCALSFGIILDADGAVEDFTIHPSL 417
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTYE E+L L +E E E++ ++ A R WR QGAI E IKV +
Sbjct: 418 IKPTYRLTYEDVDEMLELGVEAEPEIEAIANWATKRKAWRYNQGAISINMPEAMIKVKD- 476
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AF 418
P+ +LV+EMMIL GE A YG +N+ LP+RGQPQ +
Sbjct: 477 -----DDISIDILDDSPSRQLVAEMMILAGEVAARYGQKHNIPLPFRGQPQPELPPEQEL 531
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
LP G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+KA
Sbjct: 532 LQLPAGFVRACAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAH 590
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
LRGE PPFSA QL+ + V T+ + + +YW +E+LRR P++ +++
Sbjct: 591 LRGEVPPFSAEQLKEVMMTVTSTTQELTMVERQTNKYWALEYLRRHPEQIWQVTVLMWLR 650
Query: 539 KDRTAALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+D AL+L+E +GLQ +G++V VKV + PR D+I +E++
Sbjct: 651 EDSNLALILLEDLGLQLPMIFRRAVSLGEQVLVKVSFSDPRKDMIQFQEII 701
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 108 QVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFD 167
+V++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G + +
Sbjct: 23 RVVEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVIDERGQSHSLAPRQMTYTVNG-QTYK 80
Query: 168 HKDISNFLQKAEDNL 182
DI++FL++ + L
Sbjct: 81 PSDIASFLEQVKPYL 95
>gi|209528143|ref|ZP_03276617.1| Exoribonuclease II [Arthrospira maxima CS-328]
gi|376007620|ref|ZP_09784813.1| Exoribonuclease II [Arthrospira sp. PCC 8005]
gi|423063139|ref|ZP_17051929.1| ribonuclease II [Arthrospira platensis C1]
gi|209491431|gb|EDZ91812.1| Exoribonuclease II [Arthrospira maxima CS-328]
gi|375324020|emb|CCE20566.1| Exoribonuclease II [Arthrospira sp. PCC 8005]
gi|406715261|gb|EKD10417.1| ribonuclease II [Arthrospira platensis C1]
Length = 672
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 179/408 (43%), Positives = 254/408 (62%), Gaps = 11/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + E+DD +S L+DG K++IH+ADPT+ I PG D +A +
Sbjct: 265 HRFDLTHLKVYTIDDESTREIDDGVSLEFLEDGTQKIWIHIADPTRLITPGDELDLEARR 324
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+LPT PMFP +LA MSL QG++C A++ VVL+ DGS+ +YS+ SIIKPT
Sbjct: 325 RTTSVYLPTGMIPMFPPELATGPMSLVQGKICCALSFGVVLNEDGSLKDYSIHTSIIKPT 384
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+LHL ++ E E++IL + A R QWR QGAI E+ IKV E E
Sbjct: 385 YRLTYDDVDEMLHLGIKAEPEIEILGQLAKRRQQWRSSQGAISIYMPESMIKV---EGDE 441
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I+ L ++D + ++V+EMMIL GE A YG +NLALPYR QPQ +
Sbjct: 442 VIVKL-LDDSL--SRQMVAEMMILTGEVAARYGQEHNLALPYRSQPQPELPPEEELLQLP 498
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR+ A+ + M + + P RH L L Y Q TSPIRRY DLLAH+Q+KA LRG+
Sbjct: 499 AGAVRACALRRYMPRSEVSL-TPARHASLALETYTQVTSPIRRYSDLLAHFQIKAHLRGD 557
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PPFS Q++ M + + A ++ + RYW +E+LRRQ E + A++LR++++ +
Sbjct: 558 DPPFSVEQMQEMVMSLGPAVKEASKVERETNRYWSLEYLRRQTDE-VWEAILLRWLREDS 616
Query: 543 --AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
++L E+GL+ + ++GD EVKV + PR D+I +E++
Sbjct: 617 NLGLVMLEELGLELPMRFNRDIELGDRFEVKVTHSDPRQDVIQFQEII 664
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAV RP+GKK+W++ D G S ++ P+Q+T+ V G +
Sbjct: 1 MEKGTLVEFRHHGER-RLAVVDRPEGKKHWILVDDQGNSHTVHPRQITYEVGGT-TYRPA 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
DI +F ++ + L D L++ + I ++E + +D A+ L
Sbjct: 59 DIPSFYEEIQPYL----DPASLEIAWEILIEEGETVDPKGMALLL 99
>gi|291568149|dbj|BAI90421.1| ribonuclease II [Arthrospira platensis NIES-39]
Length = 673
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 252/407 (61%), Gaps = 11/407 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLKVY ID + E+DD +S L+DG K++IH+ADPT+ I+PG D +A +R
Sbjct: 267 RFDLTHLKVYTIDDESTREIDDGVSLEFLEDGTQKIWIHIADPTRLIQPGDELDLEARRR 326
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+LPT PMFP +LA MSL QG++C A++ VVL+ DGS+ +YS+ SIIKPTY
Sbjct: 327 TTSVYLPTGMIPMFPSELATGPMSLVQGKICCALSFGVVLNEDGSVKDYSIHTSIIKPTY 386
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ E+LHL ++ E E++IL + A LR QWR QGAI E+ IKV D +
Sbjct: 387 RLTYDDVDEMLHLGIKAEPEIEILGKFAKLRQQWRSSQGAISIYMPESMIKV----DGDE 442
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE- 423
+I ++D + ++V+EMMIL GE A YG +NLALPYR QPQ +
Sbjct: 443 VIVKLLDDSL--SRQMVAEMMILTGEVAARYGQEHNLALPYRSQPQPELPPEEELLQLPA 500
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
G VR+ A+ + M + + P RH L L Y Q TSPIRRY DLLAH+Q+KA LRGE
Sbjct: 501 GAVRACALRRYMPRSEVSL-TPARHASLALETYTQVTSPIRRYSDLLAHFQIKAHLRGEE 559
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT- 542
P FS Q++ M + + A ++ + RYW +E+LRRQ E + A++LR++++ +
Sbjct: 560 PAFSVEQMQEMVMSLGPAVKEASKVERETNRYWSLEYLRRQADE-VWEAILLRWLREDSN 618
Query: 543 -AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
++L E+GL+ + +GD EVKV + PR D+I +E++
Sbjct: 619 LGLVMLEELGLELPMRFNRDIALGDRFEVKVTHSDPRQDVIQFQEII 665
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
+++KG L+EF+ +R LAV RP+GKK+W++ D G S ++ P+Q+T+ V G +
Sbjct: 1 MVEKGTLVEFRIHGER-RLAVVARPEGKKHWILVDDQGNSHTVHPRQITYEVGGT-TYRP 58
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
DI +F ++ + L D L++ + I ++E + +D A+ L
Sbjct: 59 ADIPSFYEEIQPYL----DPASLEIAWEILIEEGETVDPTGMALLL 100
>gi|354564734|ref|ZP_08983910.1| Exoribonuclease II [Fischerella sp. JSC-11]
gi|353549860|gb|EHC19299.1| Exoribonuclease II [Fischerella sp. JSC-11]
Length = 681
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 175/412 (42%), Positives = 255/412 (61%), Gaps = 11/412 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D +NR DLT+LKVY ID + E+DD LS +L DGR ++++H+ADPT+++ P D
Sbjct: 274 DPDVNRLDLTYLKVYTIDDESTTEIDDGLSWEQLPDGRERLWVHIADPTRFLMPEDELDL 333
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KRG++V+LPT PMFPE LA MSL QG+VC A++ ++L + G++ YS+ S+
Sbjct: 334 EARKRGSTVYLPTGMVPMFPEILATGPMSLVQGQVCCALSFGIILDASGAVENYSIHASL 393
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTYE E+L L+++ E E+ ++ A R WR QGAI E IKV
Sbjct: 394 IKPTYRLTYEDVDEMLDLDVQAEPEIAAIARWANKRKAWRYAQGAISINMPEAMIKVK-- 451
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-F 418
E I +YV D + P+ +LV+EMMIL GE A YG + + LP+RGQPQ +
Sbjct: 452 ---EDDIKIYVLDDS-PSRQLVAEMMILAGEVAARYGQTHQIPLPFRGQPQPELPPEQEL 507
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
LP G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+KA
Sbjct: 508 LQLPAGFVRACAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAH 566
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
LRG+ PPFSA QL+ + V+ T+ + + RYW +E+LRR ++ ++A +L ++
Sbjct: 567 LRGDVPPFSAEQLKEVMMTVSTITQEVTMVERQTNRYWALEYLRRC-TDKVWQATVLMWL 625
Query: 539 KDRT--AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
++ + A +LL ++GLQ ++G++V VKV A P+ D+I +EV+
Sbjct: 626 REDSGLALILLEDLGLQLPMSFRRPLKLGEQVLVKVSHADPQKDVIQFQEVI 677
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T++V G + +
Sbjct: 1 MEKGTLVEFRLQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYIVTG-QTYKSS 58
Query: 170 DISNFLQKAEDNL 182
I++FL++ + L
Sbjct: 59 QIASFLEEVKPYL 71
>gi|411119545|ref|ZP_11391925.1| exoribonuclease R [Oscillatoriales cyanobacterium JSC-12]
gi|410711408|gb|EKQ68915.1| exoribonuclease R [Oscillatoriales cyanobacterium JSC-12]
Length = 664
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 178/413 (43%), Positives = 256/413 (61%), Gaps = 11/413 (2%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D +NR DLTHLKVY ID + E+DD LS L DGR +++IH+ADP++++ PG D
Sbjct: 259 DDPDVNRVDLTHLKVYTIDDESTREIDDGLSLEFLPDGRQRLWIHIADPSRWVFPGDELD 318
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A +R T+++LPT PMFP +LA MSL QG VC A++ V+L G+I EYS+ S
Sbjct: 319 LEARRRSTTIYLPTGMIPMFPSELATGPMSLVQGRVCCALSFGVILDDTGAIEEYSIHAS 378
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
IK TY LTYE E+L L ++ E+EL+ ++ A LR WR +QGAI + E+ IKV +
Sbjct: 379 HIKTTYRLTYEDVDEMLELGVQGESELEAIAHWANLRKDWRREQGAISISMPESSIKVQD 438
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
E I + V D + + +LV+EMMIL GE A YG +NL +P+R QPQ +
Sbjct: 439 DE-----ITIEVLDNS-VSRQLVAEMMILTGEVAARYGQEHNLPIPFRHQPQPELPPEEE 492
Query: 419 AHLPE-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
L GPVRSSAI + M + + P RH LGL Y Q TSPIRRY DLLAH+Q+KA
Sbjct: 493 LILLPAGPVRSSAIRRCMPRSEMSI-TPARHASLGLNTYTQITSPIRRYSDLLAHFQIKA 551
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
LRG PFSA +++ + ++ + A + + RYW +E+LRR P E ++AL+LR+
Sbjct: 552 HLRGAPLPFSAQEMQELTMSISSTVQEAVLVERQTNRYWGLEYLRRLPNE-IWQALMLRW 610
Query: 538 IKDRT--AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+++ +LL ++GL+ A + GD ++++V A PR DII+ +EV+
Sbjct: 611 LREHENLGLVLLEDLGLELAMRFNRTIAPGDRLQLRVSHADPRQDIIHFEEVM 663
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ S R LAV +RP+GKK+W+ D+ G S ++ P+++ + V G E +
Sbjct: 1 MEKGSLVEFRMGSVR-RLAVVERPEGKKHWIAIDERGQSHTLHPREILYEVTG-EVYKPT 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
I +FLQ+ + L D + L+V + I V++ + + A AM L
Sbjct: 59 QIKDFLQQVQPYL----DPSSLEVAWEILVEDGETVTPAEMAMLL 99
>gi|428296785|ref|YP_007135091.1| exoribonuclease II [Calothrix sp. PCC 6303]
gi|428233329|gb|AFY99118.1| Exoribonuclease II [Calothrix sp. PCC 6303]
Length = 685
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/408 (41%), Positives = 255/408 (62%), Gaps = 11/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + E+DD LS RL DGR ++++H+ADPT+++ P D +A K
Sbjct: 279 DRLDLTHLKVYTIDDESTTEIDDGLSWERLSDGRDRLWVHIADPTRWLIPEGDLDLEARK 338
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG++C A++ +V+L DG+++EYS+ S++KPT
Sbjct: 339 RGSTVYLPTGMVPMFPELLATGPMSLLQGQICYALSFAVILDDDGAVSEYSIHTSLVKPT 398
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E++ +++ A R +WR QGAI E IKV + E
Sbjct: 399 YRLTYEDVDEMLDLGVEAEPEIEAIAKWAQKRRKWRYTQGAISINMPEAMIKVKDDE--- 455
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
I++ + D + + +LV+EMMI+ GE A YG + + LP+RGQPQ + LP
Sbjct: 456 --ISIDLMDDSH-SRQLVAEMMIVAGEVAARYGKEHGIPLPFRGQPQPELPPEQELMLLP 512
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+KA LRGE
Sbjct: 513 PGFVRACAMRRCMPKSEMSI-TPVRHSGLGLDTYTQATSPIRRYSDLLTHFQIKAHLRGE 571
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PFSA QL + V + + + RYW +E+LRR P ++ ++ +L ++++ +
Sbjct: 572 QLPFSADQLRDVMMTVIGTAQEVTMVERQTNRYWSLEYLRRHP-DKIWQVTVLMWLREDS 630
Query: 543 --AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
A +LL ++G+Q + A +G+++ VKV A P+ DII +E++
Sbjct: 631 GLALILLEDLGVQLPMFFKREATLGEQLLVKVGLADPQKDIIQFQEII 678
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ SDR L + RPDGK W V D+ G + S+ PQQVT+ V G + +
Sbjct: 1 MEKGTLVEFRVGSDR-RLGIVDRPDGKTRWFVIDERGQAHSLMPQQVTYAVTG-QTYLSS 58
Query: 170 DISNFL 175
I FL
Sbjct: 59 QIPGFL 64
>gi|75907545|ref|YP_321841.1| ribonuclease II [Anabaena variabilis ATCC 29413]
gi|75701270|gb|ABA20946.1| Ribonuclease II [Anabaena variabilis ATCC 29413]
Length = 686
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/407 (41%), Positives = 240/407 (58%), Gaps = 9/407 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY +D + E+DD LS +L D R ++++H+ADPT+Y+ P D +A K
Sbjct: 278 NRLDLTHLKVYTVDDESTTEIDDGLSWEKLPDSRERLWVHIADPTRYLAPEDDLDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG VC A++ VVL G++ ++++ S+IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEILATGPMSLVQGRVCCALSFGVVLDETGAVEDFTIHPSLIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E E+ ++ A R WR QGAI E IKV N
Sbjct: 398 YRLTYEDVDEMLELGVQAEPEIAAIATWATKRKSWRYNQGAISINMPEAMIKVKN----- 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
+ +LV+EMMIL GE A YG +N+ LP+RGQPQ + LP
Sbjct: 453 -DDISIDILDDSRSRQLVAEMMILAGEVAARYGQVHNIPLPFRGQPQPELPPEDELLRLP 511
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+KA LRGE
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAHLRGE 570
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PPF+A +L+ + V T+ + + RYW +E+LRR P+E +++ +D
Sbjct: 571 VPPFTAEELKEVMMTVTSTTQELTMVERQTNRYWALEYLRRHPEEIWQVTVLMWLREDSN 630
Query: 543 AALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AL+L+E +GLQ ++G++V VKV + P+ D+I +E++
Sbjct: 631 LALILLEDLGLQLPMVFKRSVRLGEQVLVKVSISDPQKDVIQFQEII 677
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNG-NTYKPS 58
Query: 170 DISNFLQKAEDNL 182
DI FL++ + L
Sbjct: 59 DIDRFLEEVKPYL 71
>gi|428211654|ref|YP_007084798.1| exoribonuclease R [Oscillatoria acuminata PCC 6304]
gi|428000035|gb|AFY80878.1| exoribonuclease R [Oscillatoria acuminata PCC 6304]
Length = 671
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 255/408 (62%), Gaps = 10/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + E+DD +S L+DGR +++IH+ADPT+ + PG D +A +
Sbjct: 265 NRLDLTHLKVYTIDDESTLEIDDGVSLEYLEDGRQRLWIHIADPTRLLSPGDELDLEARR 324
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+V+LPT PMFP +LA MSL Q ++C A++ +V+L G++AEYS+ S IKPT
Sbjct: 325 RSTTVYLPTGMVPMFPHELATGPMSLVQSQLCAALSFAVILEESGAVAEYSIHVSTIKPT 384
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+L L L+ E E+ ++ + R WR+ QGAI + ++ IKV ++ E
Sbjct: 385 YRLTYDDVDEMLQLGLQAEPEISAIAAWSKRRHAWRVSQGAISISMPDSSIKV---DENE 441
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I +ED P+ +LV+EMMIL GE A Y +N+ +P+RGQPQ + +
Sbjct: 442 EITVQLLEDC--PSRQLVAEMMILAGELGARYAQTHNIPVPFRGQPQPELPPEEELLILP 499
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVRSSAI + M + + P RH LGL Y+Q TSPIRRY DLLAH+Q+KA LRG+
Sbjct: 500 AGPVRSSAIRRCMPKSEM-ATTPSRHASLGLDAYIQVTSPIRRYSDLLAHFQIKAHLRGD 558
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK-DR 541
P + +++ + + M R A + + RYWI+E+LRR E ++A++LR+++ D
Sbjct: 559 PLPLAVLEVQEIVQSIGMAVREASLVERQTNRYWILEYLRRHTGE-VWQAVVLRWLREDE 617
Query: 542 TAALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
L+L+E +G++ A +GD ++++V A PR+D I+ +E+V
Sbjct: 618 NLGLILLEDIGIELAWRFPRAVSLGDRLDLQVAYADPREDQIHFQEMV 665
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG LLE++ + DR LAVA RPDGKKNW+V D+NG + SI P+Q+ + + G +
Sbjct: 1 MEKGTLLEYRLNGDR-RLAVADRPDGKKNWVVVDENGQANSIPPRQIAYEIGG-GSYKPS 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
DI NF ++ E L D L+V + I V+E +D AM L
Sbjct: 59 DIPNFRKEVEKYL----DPDSLEVAWEILVEENRGVDPGEMAMLL 99
>gi|17231942|ref|NP_488490.1| ribonuclease II [Nostoc sp. PCC 7120]
gi|17133586|dbj|BAB76149.1| ribonuclease II [Nostoc sp. PCC 7120]
Length = 686
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/407 (41%), Positives = 240/407 (58%), Gaps = 9/407 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY +D + E+DD LS +L D R ++++H+ADPT+Y+ P D +A K
Sbjct: 278 NRLDLTHLKVYTVDDESTTEIDDGLSWEKLPDDRERLWVHIADPTRYLAPEDDLDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG VC A++ VVL G++ ++++ S+IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEVLATGPMSLVQGRVCCALSFGVVLDGTGAVQDFTIHPSLIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E E+ ++ A R WR QGAI E IKV N
Sbjct: 398 YRLTYEDVDEMLELGVQAEPEIAAIATWATKRKSWRYNQGAISINMPEAMIKVKN----- 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
+ +LV+EMMIL GE A YG +N+ LP+RGQPQ + LP
Sbjct: 453 -DDISIDILDDSRSRQLVAEMMILAGEVAARYGQVHNIPLPFRGQPQPELPPEDELLRLP 511
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+KA LRGE
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAHLRGE 570
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PPF+A +L+ + V T+ + + RYW +E+LRR P+E +++ +D
Sbjct: 571 VPPFTAEELKEVMMTVTSTTQELTMVERQTNRYWALEYLRRHPEEIWQVTVLMWLREDSN 630
Query: 543 AALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AL+L+E +GLQ ++G++V VKV + P+ D+I +E++
Sbjct: 631 LALILLEDLGLQLPMVFKRSVRLGEQVLVKVSISDPQKDVIQFQEII 677
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNG-NTYKPS 58
Query: 170 DISNFLQKAEDNL 182
+I FL++ + L
Sbjct: 59 EIDRFLEEVKPYL 71
>gi|434393485|ref|YP_007128432.1| Exoribonuclease II [Gloeocapsa sp. PCC 7428]
gi|428265326|gb|AFZ31272.1| Exoribonuclease II [Gloeocapsa sp. PCC 7428]
Length = 685
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 172/408 (42%), Positives = 241/408 (59%), Gaps = 11/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT+LKVY ID E+DD +S L D R +++IH+ADPT+++ P D DA +
Sbjct: 277 QRLDLTYLKVYTIDDQSTSEIDDGVSWELLADKRQRLWIHIADPTRWLVPEDELDLDARR 336
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+LPT PMFP LA MSL QG+VC A++ VVL G++ EYS+ S+IKPT
Sbjct: 337 RGTTVYLPTGMIPMFPSILATGPMSLLQGKVCCALSFGVVLDESGAVQEYSIHPSLIKPT 396
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E+ ++ A R WR QGAI E IKV + E
Sbjct: 397 YRLTYEDVDEMLELGVEGEPEIAAIATLAQRRQMWRQSQGAISINLPEAIIKVQDDEITI 456
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
++N + Q LV+EMMIL GE Y + +ALP+RGQPQ + LP
Sbjct: 457 KVLNDSLSRQ------LVAEMMILAGEVAGHYAQVHKIALPFRGQPQPELPSEEELIQLP 510
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G R+ A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+KA LRGE
Sbjct: 511 AGFARACAMRRCMPKSEMSI-TPTRHAGLGLATYTQATSPIRRYTDLLTHFQLKAHLRGE 569
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKD-- 540
+PPFS Q++ + V T+ A + + RYW +E+LRR P + ++AL+L ++++
Sbjct: 570 TPPFSGEQIQEVMLSVTSATQEATLVERQTNRYWGLEYLRRHPNQV-WQALVLMWLREDS 628
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
R A +L+ ++GLQ G ++G++V VKV PR D++ +EV
Sbjct: 629 RLALILIEDLGLQLPMVFKRGVKLGEQVSVKVSYVDPRQDVLQFQEVT 676
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W+ D+ G++ S+ P+Q+T+ V G + +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKSRWIAVDERGSTHSLAPRQITYQVSG-QSYKPP 58
Query: 170 DISNFLQKAEDNL 182
+I FL + + L
Sbjct: 59 EIPQFLAEVQAYL 71
>gi|427418757|ref|ZP_18908940.1| exoribonuclease R [Leptolyngbya sp. PCC 7375]
gi|425761470|gb|EKV02323.1| exoribonuclease R [Leptolyngbya sp. PCC 7375]
Length = 686
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 176/426 (41%), Positives = 254/426 (59%), Gaps = 16/426 (3%)
Query: 170 DISNFLQKAEDNL-----LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHV 224
++S +QK DN +R DLTHLKVY ID + E+DD LS + DGR ++++H+
Sbjct: 258 EVSAMVQKRIDNPPPDADADRLDLTHLKVYTIDDESTREIDDGLSLESVGDGRKRIWVHI 317
Query: 225 ADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL 284
ADPT+++ PG D +A +R T+V+LPT PMFPE LA MSLRQGE+C A++ +VL
Sbjct: 318 ADPTRWLLPGDDIDLEARRRCTTVYLPTGMIPMFPEALATGPMSLRQGEICCALSFGIVL 377
Query: 285 HSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGA 344
G++ EY++ S IKPTY LTY+ E+L L L+ E EL ++E+A R QWR QGA
Sbjct: 378 DETGAVEEYAIKASRIKPTYRLTYDDVDEMLELGLKAEPELNEIAESAKRRRQWRKSQGA 437
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I E+ IKV D E I++ Q + + V+EMMIL GE A YG + LA+P
Sbjct: 438 ISINMPESSIKVI---DEEITIDVLENSQ---SRQTVAEMMILAGEVAARYGEAHALAIP 491
Query: 405 YRGQPQSNIDV-SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
+R QP+ + + LP G VR SAI + M + + P RH LGL Y Q TSPI
Sbjct: 492 FRSQPEPELPSDNELLQLPSGWVRDSAIRRCMPRSEMGI-SPARHATLGLDYYSQVTSPI 550
Query: 464 RRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRR 523
RRY DLL H+Q+KA LRGE+ PFS ++ + V+ A + + RYW +EFLRR
Sbjct: 551 RRYTDLLVHFQLKAHLRGETLPFSPAEMTELTQGVSTAAYEAVTVERQTKRYWALEFLRR 610
Query: 524 QPKERQYRALILRFIKDRTAALLLV--EVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDI 581
+ K + ++LR++++ + L++ ++GL+ A +G+ +V+V A+PR D
Sbjct: 611 EGK-HAWSVMLLRWLREHESLGLVIIEDLGLELAMRFESMPALGERFDVRVVHANPRQDF 669
Query: 582 IYLKEV 587
I L+ V
Sbjct: 670 IRLEVV 675
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EFK + L VA RP+GKKNW+V D NG S + P+Q+T++V ++
Sbjct: 1 MEKGALIEFKVQGN-PRLGVADRPEGKKNWVVIDGNGQSHVLHPRQITYIVVENGDYEPS 59
Query: 170 DISNFLQKAEDNL 182
DI+ F+ +AE N+
Sbjct: 60 DIAAFMAEAEPNI 72
>gi|428317148|ref|YP_007115030.1| Exoribonuclease II [Oscillatoria nigro-viridis PCC 7112]
gi|428240828|gb|AFZ06614.1| Exoribonuclease II [Oscillatoria nigro-viridis PCC 7112]
Length = 668
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 178/413 (43%), Positives = 250/413 (60%), Gaps = 13/413 (3%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ NR DLTHLKVY ID + E+DD LS L++G+ +++IH+ADPT+ + PG D
Sbjct: 260 DSDTNRLDLTHLKVYTIDDESTTEIDDGLSLEFLENGQQRIWIHIADPTRLLSPGDELDL 319
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR T+V+LPT PMFP LA MSL QG+ C+A++ SV L G+ +YS+ S
Sbjct: 320 EARKRTTTVYLPTGMIPMFPPALATGPMSLIQGKECSALSFSVTLDETGAAQDYSIHIST 379
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTY+ E+L L +E E E+ ++ AA LR +WR QGAI E+ IKV N
Sbjct: 380 IKPTYRLTYDDVDEMLELGIEAEPEIAAIASAAKLRQKWREAQGAISIFMPESVIKV-NG 438
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--DVSA 417
+D I +YV D + M LV+EMMIL GE A YG ++L +PYR QPQ + D
Sbjct: 439 DD----IKIYVIDDSTARM-LVAEMMILAGELAARYGQAHSLPIPYRYQPQPELPPDEEL 493
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
A +P GP R+ A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+KA
Sbjct: 494 LA-VPAGPARACAVRRCMPRSEMGL-TPGRHAGLGLELYTQVTSPIRRYTDLLTHFQIKA 551
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
LRGE PFSA +++ + + + A + + RYW +E+LRR P E + AL+LR+
Sbjct: 552 HLRGEPLPFSAEEIQDIVMCLGTAVKEASTVERQTNRYWGLEYLRRNPDE-VWEALMLRW 610
Query: 538 IKDRTAALLLVEVGLQAAAWVSVG--AQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+++ + L++ L + G +IGD +EVKV PR D+I +E++
Sbjct: 611 LREDSNLGLILLEELGLELAMRFGRSVEIGDRLEVKVTHCDPRSDVINFQEMI 663
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR LAVA RPDGKKNW+V D+NG SI P+Q+T+ V G E +
Sbjct: 1 MEKGTLVEFRVHGDR-RLAVADRPDGKKNWVVVDENGQPHSIPPKQITYEVVG-ETYKPS 58
Query: 170 DISNFLQKAE 179
DI FL++ E
Sbjct: 59 DIPKFLKEVE 68
>gi|428227000|ref|YP_007111097.1| exoribonuclease II [Geitlerinema sp. PCC 7407]
gi|427986901|gb|AFY68045.1| Exoribonuclease II [Geitlerinema sp. PCC 7407]
Length = 675
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 174/407 (42%), Positives = 250/407 (61%), Gaps = 11/407 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + E+DD LS L DGR +++IH+ADPT+++EPG D +A +
Sbjct: 264 DRLDLTHLKVYTIDDESTREIDDGLSLEYLPDGRERLWIHIADPTRWVEPGDELDLEARR 323
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+LPT PMFP LA MSL QG++C A++ V+L ++G++ +YS+ S IKPT
Sbjct: 324 RGTTVYLPTGMIPMFPSDLATGPMSLIQGQICCALSFGVLLTAEGAVEDYSIHVSRIKPT 383
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L + E EL ++E A R +WR QGAI E+ IKV +D E
Sbjct: 384 YRLTYEDVDEMLQLGITAEPELNGIAEWARRRDRWRHAQGAISIRMPESSIKV---QDDE 440
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
++N+ + Q A +LV+EMMIL GE A YG + L +P+R Q Q + LP
Sbjct: 441 VVVNVLEDSQ---ARQLVAEMMILAGEVAAHYGQTHGLYMPFRNQTQPELPPEEELMQLP 497
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR+ AI + M + + P RH LGL Y Q TSPIRRY DLLAH+Q+KA LRGE
Sbjct: 498 AGPVRACAIRRCMPRSEMSL-TPARHASLGLDTYTQVTSPIRRYTDLLAHFQIKAHLRGE 556
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR- 541
PFS+ ++ + + V+ A + + RYW +EFLRR E ++A++LR++++
Sbjct: 557 PTPFSSDVMQEVLASVSTTAYEAVLVERQTNRYWGLEFLRRHTGE-VWQAMMLRWLREHE 615
Query: 542 TAALLLVEVGLQAAAW-VSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
L+L+E AW S ++G+ ++V+V PR DI+ +E+
Sbjct: 616 NLGLILLEELGLELAWRPSRSMELGERIQVRVTYVDPRQDIVQFEEM 662
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 7/117 (5%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+QKG L+EF+ DR LAVA+RP+GKK+W+V D+ G S ++ P+QVT+ V + +
Sbjct: 1 MQKGTLIEFRLHGDR-RLAVAERPEGKKHWIVIDERGQSHTLHPRQVTYEV-ADQSYKPT 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRLQDGRIKVYIHVA 225
+I FL + ++ L D + L+V + + V++ + AL A L + + + A
Sbjct: 59 EIPQFLAEVQNYL----DPSSLEVAWELLVEDGESTTPALLAQLLFSDQSPAFCYAA 111
>gi|443475455|ref|ZP_21065404.1| Exoribonuclease II [Pseudanabaena biceps PCC 7429]
gi|443019698|gb|ELS33751.1| Exoribonuclease II [Pseudanabaena biceps PCC 7429]
Length = 693
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 171/411 (41%), Positives = 254/411 (61%), Gaps = 11/411 (2%)
Query: 180 DNLLN-RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
DN+ + R+DLTHL VY ID E+DD LS L DG +++IH+ADPT++++P S D
Sbjct: 264 DNMQDLRRDLTHLHVYTIDDISTTEIDDGLSIETLSDGGKRIWIHIADPTRWLDPDSPLD 323
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
KDA KRGTSV+LPT PMFP +LA MSL + +VC+A++ +V L G+++ Y + S
Sbjct: 324 KDARKRGTSVYLPTGVIPMFPIELAAGPMSLIENKVCHALSFAVDLDRVGAVSHYEIVAS 383
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
++KP Y LTYE E+L L +E+ +L L++ A LR +WR++QGAI+ +T +KV N
Sbjct: 384 LVKPNYRLTYEDVEEMLQLGVED--DLDRLADFARLRKKWRVEQGAIEIHLPDTTVKV-N 440
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSA 417
+ + + +ED + +LV+EMMIL GE A + NN+ +PYR Q Q + +
Sbjct: 441 SQSGDGLTLELMEDTF--SRQLVAEMMILAGEVAAKFAQANNIPIPYRYQEQPELPPLDT 498
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
LP GPVR AI + M ++ RH LGL Y Q TSPIRRY DLLAH+Q+KA
Sbjct: 499 LMQLPSGPVREFAICRCMTKGSLGLYAS-RHSGLGLDAYAQVTSPIRRYSDLLAHWQIKA 557
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
LR ES PF+A L + ++ A ++ S+RYW +E+LRR K+ + AL+L +
Sbjct: 558 FLRKESLPFTAEMLTAILQAIDPAIWDANQVEKQSVRYWSLEYLRRN-KDVVWEALMLDW 616
Query: 538 IK--DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586
++ ++ A +L+ ++GL+ ++ Q+GD + +K E PR DIIY +E
Sbjct: 617 LRENEKLALVLIEDLGLKLPMRINRQIQVGDNLRIKTGEVDPRKDIIYFQE 667
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPG---VEKF 166
++KG L+E K DR L+ V RP+GKK++ D+NG S +I P+++ + + F
Sbjct: 1 MEKGTLIEVKLHGDRRLV-VIDRPEGKKHFQAIDENGNSHTIHPREINYTIKANGESSSF 59
Query: 167 DHKDISNFLQKAE 179
+ I +FLQK E
Sbjct: 60 TYTQIPSFLQKVE 72
>gi|427705694|ref|YP_007048071.1| exoribonuclease II [Nostoc sp. PCC 7107]
gi|427358199|gb|AFY40921.1| Exoribonuclease II [Nostoc sp. PCC 7107]
Length = 686
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 171/408 (41%), Positives = 251/408 (61%), Gaps = 9/408 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+NR DLTHLKVY ID + E+DD LS L DGR ++++H+ADPT+++EP D +A
Sbjct: 277 VNRLDLTHLKVYTIDDESTTEIDDGLSWESLNDGRERLWVHIADPTRWLEPEDDLDLEAR 336
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG++V+LPT PMFPE LA MSL QG +C A++ ++L S G++ +YS+ S+IKP
Sbjct: 337 KRGSTVYLPTGMVPMFPEILATGPMSLVQGRICCALSFGIILDSTGAVEDYSIHASLIKP 396
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTYE E++ + ++ E E++ ++ A R WR QGAI E IKV E
Sbjct: 397 TYRLTYEDVDEMVQIGVQAEPEIEAIANWAKKRKSWRYNQGAISINMPEAMIKVKGDE-- 454
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA-HL 421
I++ + D + + +LV+EMMIL GE A YG +N+ LP+RGQPQ + L
Sbjct: 455 ---ISIDILDDSS-SRQLVAEMMILAGEVAARYGKTHNIPLPFRGQPQPELPPEEELIQL 510
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P G VR+ A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+KA LRG
Sbjct: 511 PAGFVRACAMRRCMPKSEMSI-TPLRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAHLRG 569
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
E PFSA QL+ + V+ T+ + + RYW +E+LRR P++ +++ +D
Sbjct: 570 EVLPFSADQLKEVMMTVSTITQEVTMVERQTNRYWALEYLRRHPEQVWSVTVLMWLREDS 629
Query: 542 TAALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AL+L+E +GLQ A++G+++ VKV A P+ D+I +E++
Sbjct: 630 NLALILLEDLGLQLPMIFKRSAKLGEQLLVKVSIADPQKDMIQFQEIM 677
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G + +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNG-QTYKSS 58
Query: 170 DISNFLQKAEDNL 182
+I+ FL++ + L
Sbjct: 59 EIAKFLEEVKPYL 71
>gi|113477198|ref|YP_723259.1| exoribonuclease II [Trichodesmium erythraeum IMS101]
gi|110168246|gb|ABG52786.1| Exoribonuclease II [Trichodesmium erythraeum IMS101]
Length = 674
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 172/412 (41%), Positives = 249/412 (60%), Gaps = 9/412 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D NR DLTHLKVY ID + E+DD LS L+DG+ ++++H+ADPT+ + PG D
Sbjct: 260 DPETNRLDLTHLKVYTIDDESTQEIDDGLSIEFLEDGQHRIWVHIADPTRLLIPGDELDL 319
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A +R T+++LPT PMFP +LA MSL QG+VC A++ ++L G++ +Y + S+
Sbjct: 320 EARRRTTTLYLPTGMVPMFPPELATGPMSLIQGQVCRALSFGILLDESGAVIDYIIHASL 379
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTY+ E+L L ++ E E+ L++ A R +WR QG+I E+ IKV
Sbjct: 380 IKPTYRLTYDDVDEMLQLKIKLEPEIHALNDWAKQRFKWRQSQGSISIYMPESVIKVKG- 438
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-F 418
+ E I ++D P+ +LV+EMMIL GE A YG NN+ LPYR QPQ + A
Sbjct: 439 -EGEEITVEVLDD--SPSRQLVAEMMILAGEVGAKYGQENNIPLPYRSQPQPELPPDAEL 495
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
LP GPVRS+A+ + M + + P RH L L YVQ TSPIRRY DLLAH+Q+KA
Sbjct: 496 MLLPAGPVRSTAMRRCMPKSEMG-TIPARHASLALETYVQVTSPIRRYSDLLAHFQIKAH 554
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
LRG+ PF+ Q++ M + + A + + RYW +E+LRR E ++AL++R++
Sbjct: 555 LRGDPLPFTLEQMQEMVMSLVPAVKEASSVERFTNRYWGLEYLRRNSGE-VWQALVIRWL 613
Query: 539 KDRTAALLLVEVGLQAAAWVSVG--AQIGDEVEVKVEEAHPRDDIIYLKEVV 588
K+ L++ L + G ++GD +EVKV A PR D I +E+V
Sbjct: 614 KEEINLGLVLLEELGLELAMRFGRSVEVGDRLEVKVAHADPRRDEIVFQEIV 665
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAVA RPDGKKNW+V + NG S SI P+Q+++ V G E +
Sbjct: 1 MEKGKLIEFRLHGER-RLAVADRPDGKKNWVVIEANGKSNSIPPKQISYEVGG-ESYQSS 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
+I F+Q+ + L D + L+V + + V+EA+ ++ A+ L
Sbjct: 59 EIPQFIQEVKTYL----DPSSLEVAWELLVEEAEAVNPEEMALLL 99
>gi|434389380|ref|YP_007099991.1| exoribonuclease R [Chamaesiphon minutus PCC 6605]
gi|428020370|gb|AFY96464.1| exoribonuclease R [Chamaesiphon minutus PCC 6605]
Length = 672
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 176/410 (42%), Positives = 257/410 (62%), Gaps = 19/410 (4%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHLKVY ID + E+DD LS L DGR K++IH+ADPT+ + P D +A KR
Sbjct: 266 RRDLTHLKVYTIDDESTQEIDDGLSVETLPDGRQKLWIHIADPTRLLSPDDEFDLEARKR 325
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+++LPT PMFP +LA MSLRQG+ C A++ V+L G+ +EY + S I+PTY
Sbjct: 326 SVTIYLPTGMIPMFPPELATGPMSLRQGQKCCALSFGVILDESGAASEYEITTSTIEPTY 385
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE E+L L + E E++ +++AA LR QWRL QG+I+ E+ +KV+ +
Sbjct: 386 RLTYEDVEEMLQLRIPGENEIEAIAKAAKLRNQWRLSQGSININMPESTVKVSGDKVS-- 443
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE- 423
I+L +ED + A RLV+EMMIL GE A YG N+L LPYRGQPQ + L
Sbjct: 444 -IDL-IED--NRARRLVAEMMILAGEVAAKYGQDNSLPLPYRGQPQPELPPEEELILIPV 499
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
GP RS A+ + M + + P RH LGL Y Q TSPIRRY DLL+H+Q+KA LRG+
Sbjct: 500 GPARSCAVRRCMPRSEM-ATTPSRHASLGLNTYSQVTSPIRRYTDLLSHFQIKAHLRGDE 558
Query: 484 PPFSAGQLE----GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK 539
PF+ +L+ G+ + + T + R+ + RYW +E+L R +R++ AL LR+++
Sbjct: 559 LPFTVERLQEIMMGLGTSIYEATMVERQTN----RYWTLEYLNRS-GDREWDALFLRWLR 613
Query: 540 -DRTAALLLV-EVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
D + AL+L+ E+G++ A + +G++++V+V PR DII+L+E+
Sbjct: 614 EDESLALILIEELGIELAMRFNRWVALGEQIQVQVALVDPRQDIIHLREI 663
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF + +R LA+A RP+GKK+W+ D S ++ P+ +T+ V G+
Sbjct: 1 MEKGTLVEFWHNGER-RLAIADRPEGKKHWIAIDARSQSHTLHPRDITYEVAGISCKQPA 59
Query: 170 DISNFLQKAEDNL 182
+I+ F + N+
Sbjct: 60 EINKFTTEVAPNV 72
>gi|428223314|ref|YP_007107484.1| exoribonuclease R [Synechococcus sp. PCC 7502]
gi|427996654|gb|AFY75349.1| exoribonuclease R [Synechococcus sp. PCC 7502]
Length = 669
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 166/407 (40%), Positives = 251/407 (61%), Gaps = 10/407 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
++R DLTHL VY ID + E+DD LS L +G+ +++IH+ADPT+++EP + D++A
Sbjct: 261 MHRLDLTHLHVYTIDDESTTEIDDGLSIETLPNGKQRLWIHIADPTRWMEPNDILDREAR 320
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRGT+++LPT PMFP LA MSL Q ++C+A++ +V L G + Y + S+IKP
Sbjct: 321 KRGTTIYLPTGMIPMFPPALATGEMSLVQRQICHALSFAVELSDQGEVEYYEIHASLIKP 380
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
+Y LTYE E+L L + EA+L+ ++ A LR WRL QGAI+ E IK ANP D
Sbjct: 381 SYRLTYEDVQEMLALGV--EADLEAIAHHARLRASWRLNQGAININLPEAIIK-ANPHDN 437
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHL 421
+ +++ V D + A +LV+EMMIL GE A Y +N+ +PYR Q Q + L
Sbjct: 438 DQ-LDIEVIDNSF-ARKLVAEMMILTGEVAAKYAQTHNIPVPYRFQGQPELPTEETLQTL 495
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P GPVR A+V+ M+ + P RH LGL YVQ TSPIRRY DLL H+Q+KA + G
Sbjct: 496 PPGPVREFAMVRCMQKGEVGV-IPSRHAGLGLDAYVQVTSPIRRYGDLLIHFQIKAHVAG 554
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK-- 539
PF+ L+ + S+++ A ++ ++RYW +E+LRR ++ +RA++L ++K
Sbjct: 555 LPLPFTESALQDLLSMIDPAIYEASQMEKQTVRYWSLEYLRRH-RDHVWRAVLLDWLKEQ 613
Query: 540 DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586
DR +LL ++GL+ ++ +G+ + +KV + PR DII +E
Sbjct: 614 DRIGLILLEDIGLKIPIKLNRAVNVGENLNLKVSDVDPRRDIIQFQE 660
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 115 LLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVE---KFDHKDI 171
++EF+ DR LAV RP+GKK+ V D+NG + P+Q+ FV+ +F K I
Sbjct: 1 MVEFRLHGDR-RLAVVDRPEGKKHLQVIDENGTPHILHPRQIDFVITSSTESPRFTVKQI 59
Query: 172 SNFLQKAEDNL 182
F Q+ ++ L
Sbjct: 60 QTFFQQVQEFL 70
>gi|254417643|ref|ZP_05031377.1| RNB-like protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196175561|gb|EDX70591.1| RNB-like protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 671
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 167/407 (41%), Positives = 243/407 (59%), Gaps = 10/407 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLKVY +D + E+DD LS +L DG+ +++IH+ADPT+ + P D++A +R
Sbjct: 263 RLDLTHLKVYTVDDESTSEIDDGLSLEQLDDGKERLWIHIADPTRLVRPDDELDREARRR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
T+++LPT MFP +LA MSL +G+VC ++ V+L DGS+ EY + S+IKPTY
Sbjct: 323 STTLYLPTGMISMFPAELATGPMSLVEGQVCPTLSFGVILDEDGSVQEYKIHPSLIKPTY 382
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE E+L L ++ E E+ +++ A R +WR QGAI E IKV D +
Sbjct: 383 RLTYEDVDEMLELGVKAEPEIAAIAKWAKRRQEWRSSQGAISIHMPEAVIKV---RDQDE 439
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLPE 423
II +ED A +V+EMMIL GE YG + + LP+RGQPQ + LP
Sbjct: 440 IIIQVLEDSQ--ARLMVAEMMILAGEVAGRYGQSHQIPLPFRGQPQPELPSDEELLVLPP 497
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
GPVR A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+KA LRG+
Sbjct: 498 GPVRFCAMRRCMPRSEMSI-TPLRHAGLGLETYTQVTSPIRRYTDLLNHFQLKAHLRGDP 556
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--DR 541
PFSA L+ V A + + RYW +E+LRR P ++ ++AL+LR+++ D
Sbjct: 557 LPFSAEYLQETMQGVTTAASEAAMVERQTNRYWGLEYLRRHP-DQVWQALMLRWLREHDN 615
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+LL ++GL+ ++GD ++V+V A PR D+I +E++
Sbjct: 616 LGLILLEDLGLELVMRFKRSVRLGDRLDVQVTHADPRQDVIQFRELM 662
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR LA+ RPDGK W V D+ G S ++ P+QVT+ V KFD
Sbjct: 1 MEKGTLIEFRVQGDR-HLAIVDRPDGKTRWTVIDEQGQSHTLHPRQVTYEVQD-GKFDVS 58
Query: 170 DISNFLQKAEDNL 182
+I +FL + E L
Sbjct: 59 EIPDFLSQIEPYL 71
>gi|428307273|ref|YP_007144098.1| exoribonuclease II [Crinalium epipsammum PCC 9333]
gi|428248808|gb|AFZ14588.1| Exoribonuclease II [Crinalium epipsammum PCC 9333]
Length = 683
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 241/408 (59%), Gaps = 11/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + E+DD LS DGR +++IH+ADP++ + PG D +A +
Sbjct: 274 NRLDLTHLKVYTIDDESTQEIDDGLSVETSSDGRQRLWIHIADPSRLVSPGDDLDLEARR 333
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP LA MSL QG++C A++ V+L G + EY + + +KPT
Sbjct: 334 RTTTLYLPTGMIPMFPPDLATGPMSLVQGKLCYALSFGVILDESGGVEEYRIHPTSVKPT 393
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E E+ ++ A LR WR QG+I+ + E IKV E
Sbjct: 394 YRLTYEDVDEMLQLGVQAEPEIADIAALARLRQSWRQSQGSINISMPEASIKVYGDEI-- 451
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
IN+ +ED P+ +LV+EMMIL GE YG + L L YR QPQ + LP
Sbjct: 452 -TINV-LED--SPSRQLVAEMMILAGEVAGRYGQDHQLPLLYRSQPQPELPPQEELLQLP 507
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR A+ + M + + P RH LGL Y Q TSPIRRY DLLAH+Q+KA LRGE
Sbjct: 508 AGPVRFCAMRRCMPRSEMSV-TPARHASLGLETYTQVTSPIRRYSDLLAHFQIKAHLRGE 566
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
PFSA +L+ + V+ A + + RYW +E+LRR E ++A +LR+++ D
Sbjct: 567 PLPFSAEKLQEIVLSVSSSAYEATLVERQTNRYWGLEYLRRNAGE-VWQAQMLRWLREDD 625
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+LL ++GL+ A GD +EV+V A PR D+I+L+E V
Sbjct: 626 NLGLILLEDLGLELAMRFKRSLHPGDRLEVQVSHADPRQDVIHLRESV 673
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 7/120 (5%)
Query: 107 NQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+++++KG L+EF ++ +R LAV RP+GKK+W+ D S ++ P+++T+ V G + +
Sbjct: 10 SKLVEKGTLIEFWQNGER-RLAVIDRPEGKKHWIAIDVRSQSHTLHPRKITYEVKG-QTY 67
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRLQDGRIKVYIHVA 225
DI +FL + + L D + ++V + + V++ + D A A L + VY + A
Sbjct: 68 KPSDIPSFLAEVQPLL----DPSSVEVAWELLVEDGETFDPATLASILFSDQSPVYCYAA 123
>gi|334116976|ref|ZP_08491068.1| Exoribonuclease II [Microcoleus vaginatus FGP-2]
gi|333461796|gb|EGK90401.1| Exoribonuclease II [Microcoleus vaginatus FGP-2]
Length = 668
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 176/413 (42%), Positives = 248/413 (60%), Gaps = 13/413 (3%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ NR DLTHLKVY ID + E+DD LS L++G+ +++IH+ADPT+ + PG D
Sbjct: 260 DSDTNRLDLTHLKVYTIDDESTTEIDDGLSLEFLENGQQRLWIHIADPTRLLSPGDELDL 319
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR T+V+LPT PMFP LA MSL QG+ C+A++ SV L G+ +YS+ S
Sbjct: 320 EARKRTTTVYLPTGMIPMFPPALATGPMSLIQGKECSALSFSVTLDEIGAAQDYSIHIST 379
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTY+ E+L L +E E E+ ++ AA LR +WR QGAI E+ IKV N
Sbjct: 380 IKPTYRLTYDDVDEMLELGIEAEPEIAAIASAAKLRQKWREAQGAISIFMPESVIKV-NG 438
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--DVSA 417
+D I ++V D + M LV+EMMIL GE YG ++L +PYR QPQ + D
Sbjct: 439 DD----IKIHVIDDSTARM-LVAEMMILAGELAGRYGQAHSLPIPYRYQPQPELPPDEEL 493
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
A +P GP R+ A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+KA
Sbjct: 494 LA-VPAGPARACAVRRCMPRSEMGL-TPGRHAGLGLELYTQVTSPIRRYTDLLTHFQIKA 551
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
LRGE PFSA +++ + + + A + + RYW +E+LRR P E + AL+LR+
Sbjct: 552 HLRGEPLPFSAEEIQDIVMCLGTAVKEASTVERQTNRYWGLEYLRRNPDE-VWEALMLRW 610
Query: 538 IKDRTAALLLVEVGLQAAAWVSVG--AQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+++ + L++ L + G IGD +EVKV PR D+I +E++
Sbjct: 611 LREDSNLGLILLEELGLELAMRFGRSVAIGDRLEVKVTHCDPRSDVINFQEMI 663
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR LAVA RPDGKKNW+V D+NG SI P+Q+T+ V G E +
Sbjct: 1 MEKGTLVEFRVHGDR-RLAVADRPDGKKNWVVVDENGQPHSIPPKQITYEVVG-ETYKPS 58
Query: 170 DISNFLQKAE 179
DI FL++ E
Sbjct: 59 DIPKFLKEVE 68
>gi|443310614|ref|ZP_21040260.1| exoribonuclease R [Synechocystis sp. PCC 7509]
gi|442779319|gb|ELR89566.1| exoribonuclease R [Synechocystis sp. PCC 7509]
Length = 679
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 243/405 (60%), Gaps = 17/405 (4%)
Query: 189 THLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSV 248
T LKVY ID + E+DD LS L +G+ K+++H+ADPT+++ P DK+A +RGT+V
Sbjct: 281 TRLKVYTIDDESTSEIDDGLSWEVLANGQQKLWVHIADPTRWLIPEDELDKEARRRGTTV 340
Query: 249 FLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTY 308
+LPT PMFP LA MSL QG+ C A++ V+L G++ YS+ S+IKPTY LTY
Sbjct: 341 YLPTGMIPMFPAVLATGPMSLIQGKSCCALSFGVILDELGAVESYSIHASVIKPTYRLTY 400
Query: 309 ESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINL 368
E E+L L L E E+ ++ A LR WR QGAI E IKV E IN+
Sbjct: 401 EDVDEMLQLGLRAEPEIAAIASLAQLRKTWRHSQGAISIHLPEASIKVKGDEI---TINV 457
Query: 369 YVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLPEGPVR 427
+ED + +LV+EMMIL GE YG +N+ALP+RGQPQ + LP GPVR
Sbjct: 458 -LEDST--SRQLVAEMMILAGEVAGRYGQAHNIALPFRGQPQPELPSAEELIQLPAGPVR 514
Query: 428 SSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFS 487
+ + + M + + P RH LGL Y Q TSPIRRY DLL H+Q+KA LRGE PFS
Sbjct: 515 ACGMRRCMPKSEMSI-TPSRHAGLGLQTYTQATSPIRRYSDLLTHFQLKAHLRGEDLPFS 573
Query: 488 AGQL-EGMASI--VNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTA- 543
A QL E M S+ V + + R +N RYW +E+LRR P+E ++AL+L ++++ T
Sbjct: 574 AEQLKEVMLSVFSVTQEVVLVERQTN---RYWGLEYLRRHPEE-VWQALVLMWLREDTGL 629
Query: 544 ALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
AL+L+E +GLQ +G++V +K PR DI+ +EV
Sbjct: 630 ALILIEDLGLQLPMPFKRDVALGEQVLLKAAYVDPRQDILQFQEV 674
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+ KG L+EFK DR LAV RPDGK W V D+ G + S+ P+QVT+ VPG + +
Sbjct: 1 MDKGTLVEFKVQGDR-RLAVVDRPDGKTRWFVVDERGTAHSLTPRQVTYSVPG-QTYKAS 58
Query: 170 DISNFL 175
+I FL
Sbjct: 59 EIPKFL 64
>gi|434407914|ref|YP_007150799.1| exoribonuclease R [Cylindrospermum stagnale PCC 7417]
gi|428262169|gb|AFZ28119.1| exoribonuclease R [Cylindrospermum stagnale PCC 7417]
Length = 686
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 170/407 (41%), Positives = 246/407 (60%), Gaps = 9/407 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + E+DD LS L DGR ++++H+ADPT+++ P D +A K
Sbjct: 278 NRLDLTHLKVYTIDDESTTEIDDGLSWELLSDGRQRLWVHIADPTRWLVPEDELDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG + A++ +VL + G++A+YS+ S+IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEVLATGPMSLVQGRISCALSFGIVLETTGAVADYSIHPSLIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E++ ++ A R WR QGAI E IKV + E
Sbjct: 398 YRLTYEDVDEMLELGVEAEPEIEAIANWAKQRKSWRYHQGAISINMPEAMIKVKDGE--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I++ + D + + +LV+EMMIL GE A YG +N+ LP+RGQPQ + L
Sbjct: 455 --ISIDILDDSS-SRQLVAEMMILAGEVAARYGQTHNIPLPFRGQPQPELPPDEELLLLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+KA LRGE
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-TPVRHAGLGLATYTQATSPIRRYSDLLTHFQLKAHLRGE 570
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PFSA QL+ + V T+ + + RY+ +E+LRR P++ +++ +D
Sbjct: 571 ILPFSAEQLKEVMMNVTSTTQEVTMVERQTNRYYALEYLRRHPEQVWQITVLMWLREDSN 630
Query: 543 AALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AL+L+E +GLQ +G+++ VKV + P+ D+I +E++
Sbjct: 631 LALILLEDIGLQLPMTFKRSVNLGEQLLVKVGLSDPQKDMIQFQEIM 677
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G + +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNG-QTYKPS 58
Query: 170 DISNFLQKAEDNL 182
+I++FLQ+ + L
Sbjct: 59 EIASFLQQVQPYL 71
>gi|300869627|ref|ZP_07114207.1| exoribonuclease II [Oscillatoria sp. PCC 6506]
gi|300332405|emb|CBN59407.1| exoribonuclease II [Oscillatoria sp. PCC 6506]
Length = 670
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 253/412 (61%), Gaps = 11/412 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ +R DLTHLKVY ID + E+DD LS L++G+ +++IH+ADPT + PG D
Sbjct: 260 DSESDRLDLTHLKVYTIDDESTTEIDDGLSLEFLENGQQQLWIHIADPTSLLSPGDELDL 319
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR T+V+LPT PMFP +LA MSL QG+VC +++ V+L G+I +YS+ ++
Sbjct: 320 EARKRTTTVYLPTGMVPMFPPELATGPMSLVQGQVCPSLSFRVILDETGAIQDYSIHITL 379
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTYE E+LHL + E E+ ++ A +R WR QGAI E+ IKV
Sbjct: 380 IKPTYRLTYEDVDEMLHLAIAAEPEISAIAAWAKVRHGWRQTQGAISIYMPESVIKVCGD 439
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
+ ++++V D + PA LV+EMMIL GE A YG ++L LPYR QPQ +
Sbjct: 440 D-----VSVHVLDDS-PARELVAEMMILTGEVAAQYGQTHSLVLPYRHQPQPELPPEEEL 493
Query: 420 HLPE-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
GP R+ A+ + M + + P RH LGL Y Q TSPIRRYMDLLAH+Q+KA
Sbjct: 494 LQLPAGPARACAVRRCMPRSEMSL-MPARHAGLGLEAYTQVTSPIRRYMDLLAHFQIKAH 552
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
LRGE+PPFSA Q+ M ++ + A + + RYW +E+LRR E ++A++LR++
Sbjct: 553 LRGETPPFSAEQMLEMIMSLSPAVKEASNVERQTNRYWGLEYLRRHAGE-VWQAMMLRWL 611
Query: 539 KDRT--AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
++ T +LL E+GL+ A S +IGD +EVKV PR D I +E++
Sbjct: 612 REDTNVGLVLLEELGLELAMRFSRPVEIGDRLEVKVTHCDPRSDAIQFQEMI 663
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAVA RPDGKKNW+V D+N S SI P+Q+++ V G E +
Sbjct: 1 MEKGTLIEFRLHGER-RLAVADRPDGKKNWVVVDENSQSHSIPPKQISYEVVG-ETYKPT 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
I FL++ E N D T L+V + + V++ + +D AM L
Sbjct: 59 QIPTFLKEVE----NYSDPTSLEVAWELLVEDGETVDPPGLAMLL 99
>gi|119509770|ref|ZP_01628915.1| Ribonuclease II [Nodularia spumigena CCY9414]
gi|119465636|gb|EAW46528.1| Ribonuclease II [Nodularia spumigena CCY9414]
Length = 686
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 170/407 (41%), Positives = 238/407 (58%), Gaps = 9/407 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL+HLKVY ID + E+DD LS L DGR ++++H+ADPT+++ P D +A K
Sbjct: 278 NRLDLSHLKVYTIDDESTTEIDDGLSWEILPDGRERLWVHIADPTRWLVPEDELDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG + A++ VVL G + +Y++ S IKPT
Sbjct: 338 RGSTVYLPTGMVPMFPELLATGPMSLVQGRISCALSFGVVLDESGGVEDYTIHPSFIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E++ ++ A R WR QGAI E IKV N +
Sbjct: 398 YRLTYEDVDEMLELGVEAEPEIEAIANWAKRRKSWRYNQGAISINMPEATIKVKNDQIDI 457
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I++ Q LV+EMMI+ GE A YG +N+ LP+RGQPQ + L
Sbjct: 458 DILDDSSSRQ------LVAEMMIMAGEVAARYGQAHNIPLPFRGQPQPELPPDEELLLLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VRS A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+KA LRGE
Sbjct: 512 AGFVRSCAMRRCMPKSEMSI-TPLRHAGLGLNTYTQATSPIRRYSDLLTHFQLKAHLRGE 570
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
S PF+A QL + V T+ + + RYW +E+LRR P + +++ +D
Sbjct: 571 SLPFTADQLREVMMTVTSTTQEVTMVERQTNRYWALEYLRRHPDQVWDVTVLMWLREDSN 630
Query: 543 AALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AL+L+E +GLQ + +G++V VKV A P+ D+I +E++
Sbjct: 631 LALILLEDLGLQLPMFFKRSVGLGEQVLVKVSHADPQKDMIQFQEII 677
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+ KG L+EF+ DR L V RPDGK W + D+ G S S+ P+Q+T+ V G + +
Sbjct: 1 MDKGTLVEFRVQGDR-RLGVVDRPDGKTRWFIVDERGQSHSLAPRQITYTVNG-QTYKPS 58
Query: 170 DISNF 174
+I++F
Sbjct: 59 EIASF 63
>gi|428310624|ref|YP_007121601.1| exoribonuclease R [Microcoleus sp. PCC 7113]
gi|428252236|gb|AFZ18195.1| exoribonuclease R [Microcoleus sp. PCC 7113]
Length = 671
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/409 (41%), Positives = 238/409 (58%), Gaps = 12/409 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT LKVY ID + E+DD LS L+DGR +++IH+ADPT+ + G D +A +
Sbjct: 262 DRLDLTGLKVYTIDDESTQEIDDGLSIEVLEDGRQRLWIHIADPTRLVMQGDELDLEARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP +LA MSL QG VC A++ VVL GS+ +Y + S +KPT
Sbjct: 322 RSTTLYLPTGMVPMFPPELATGPMSLVQGRVCPALSFGVVLDETGSVQDYQIRASFVKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L + E E+ ++ A R +WR QGAI E+ IKV +D
Sbjct: 382 YRLTYEDVDEMLELGVRAEPEIAEIATWAYKRQEWRRSQGAISIHMPESVIKVKGEDD-- 439
Query: 364 PIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHL 421
+ +E D R LV+EMMIL GE YG + + LP+RGQPQ + L
Sbjct: 440 ----ISIEVLEDSRSRLLVAEMMILAGEVAGRYGQTHQIPLPFRGQPQPELPSEEELMQL 495
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P GPVR A+ + M + + P+RH LGL Y Q TSPIRRY DL++H+Q+KA LRG
Sbjct: 496 PAGPVRFCAMRRCMPKSEMSI-TPLRHAGLGLEIYTQVTSPIRRYTDLMSHFQIKAHLRG 554
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI--LRFIK 539
+ PFSA QL+ V + A + + RYW +E+LRR +R ++AL+ LR
Sbjct: 555 DPLPFSAQQLQETMLSVTTAAKEATWVERQTNRYWGLEYLRRN-ADRVWQALVLNLREPD 613
Query: 540 DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+ +LL ++GL+ +GD ++V+V A PR D+I+ KE++
Sbjct: 614 NNEGFILLEDLGLELKMRFRRAVALGDRLDVQVSHADPRQDVIHFKELI 662
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR LA A RP+GKK+W+V D+ G S ++ P+Q+T+ V G
Sbjct: 1 MEKGTLIEFRLGGDR-RLATADRPEGKKHWIVVDERGQSHTLHPRQITYEVTGC-TLKPS 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV 193
+I +F+++ E L D T L+V
Sbjct: 59 EIPSFVKEVEPYL----DPTSLEV 78
>gi|443317238|ref|ZP_21046654.1| exoribonuclease R [Leptolyngbya sp. PCC 6406]
gi|442783123|gb|ELR93047.1| exoribonuclease R [Leptolyngbya sp. PCC 6406]
Length = 676
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 248/408 (60%), Gaps = 9/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHLKVY +D E+DD +S L+DGR ++++H+ADPT+++ PG D DA +
Sbjct: 266 QRLDLTHLKVYTVDDASTREIDDGVSLETLEDGRQRLWVHIADPTRWVFPGDTLDLDARR 325
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP +LA MSL QGEVC A++ ++L + G + Y + S I+PT
Sbjct: 326 RSTTLYLPTGMIPMFPLELATGPMSLIQGEVCCALSFGIILTAAGDVESYRIAPSHIRPT 385
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E+EL ++E + +R QWR QGAI E+ I+V+ ED
Sbjct: 386 YRLTYEDVDEMLDLGVQAESELLAIAEWSQVRQQWRSTQGAIAIHMPESSIRVSEQED-- 443
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA-HLP 422
I +ED PA ++V+EMMIL GE A YG ++LA+P+R QPQ + LP
Sbjct: 444 DIDIQLLED--SPARQMVAEMMILTGEVAARYGQEHDLAIPFRSQPQPELPPEEELMQLP 501
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GP R SAI + M + + P RH LGL Y Q TSPIRRY DLLAH+Q+KA LRG+
Sbjct: 502 SGPARYSAIRRCMSRSEMGL-TPARHATLGLASYSQVTSPIRRYTDLLAHFQIKAHLRGD 560
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PFS+ ++ + + A + + RYW +E+LRR P ++ ++A++LR++++
Sbjct: 561 PLPFSSTEMTELMQGASTAAYEAVLVERQTKRYWALEYLRRHP-DQVWQAMLLRWLRESE 619
Query: 543 AALLLVEVGLQAAAWVSV--GAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
L++ L V + +G+E +V+V A+PR D+I + EVV
Sbjct: 620 LLGLILLEELGLELGVRLERDMTLGEEFQVRVTHANPRQDVIRMAEVV 667
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 110 LQKGLLLEFK-KDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGV 163
+++G L+EF+ + + R L V +RP+GKKNW+ D+ G S + P+ +TF V G
Sbjct: 1 MERGTLVEFRVQGTPR--LGVLERPEGKKNWVAVDERGQSHVLHPRDITFQVAGA 53
>gi|56750434|ref|YP_171135.1| ribonuclease II [Synechococcus elongatus PCC 6301]
gi|81299933|ref|YP_400141.1| exoribonuclease II [Synechococcus elongatus PCC 7942]
gi|56685393|dbj|BAD78615.1| ribonuclease II [Synechococcus elongatus PCC 6301]
gi|81168814|gb|ABB57154.1| Exoribonuclease II [Synechococcus elongatus PCC 7942]
Length = 670
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 247/406 (60%), Gaps = 9/406 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL+HLKVY ID + E+DD LS RL DGR+++++HVADPT+ IEPG D +A +R
Sbjct: 264 RQDLSHLKVYTIDDESTREIDDGLSCQRLSDGRLQLWVHVADPTRLIEPGDALDLEARRR 323
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
T+++LPT PMFP +LA MSL QG+ C A++ + L G+IA Y + S I+PTY
Sbjct: 324 STTIYLPTGMVPMFPLELAAGPMSLVQGQACCALSFGICLDEQGAIASYEIVPSQIRPTY 383
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE E+L L + E EL L E A R +WR QQGAI E IKV+ +D
Sbjct: 384 RLTYEDVDEMLDLGVTAEQELLDLWEMAQRRRRWRHQQGAIAINMPEAVIKVSEADDQ-- 441
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLPE 423
I++ V +++ A LV+EMMIL GE YG+ N L LP+RGQPQ + LP
Sbjct: 442 -ISISVLEES-AARALVAEMMILAGEVAGHYGATNGLPLPFRGQPQPELPSEEELLALPA 499
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
GPVRS AI + M + P RH LGL Y Q TSPIRRY DL+ H+Q+KA LRG+
Sbjct: 500 GPVRSCAIRRCMPRSETSL-NPQRHASLGLDRYSQVTSPIRRYTDLVTHFQIKAHLRGDQ 558
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTA 543
PFSA +LE + + A + + RYW +E+LRRQ +R + +LILR++++
Sbjct: 559 LPFSAEELETLLQSTLSLSYEAVLVERQTNRYWGLEYLRRQ-GDRIWSSLILRWLREHEQ 617
Query: 544 -ALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
AL+L+E +GL+ +S ++GD + ++V A PR D I + V
Sbjct: 618 LALILIEDLGLELPIRLSQPVELGDRLALRVTHADPRQDRIQFEVV 663
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++ G L+EF+ R L V RPDGKKNW+V D+ GA+ S+ P+ T+VV G + + +
Sbjct: 1 MEAGTLIEFRLGGQRHL-GVLDRPDGKKNWIVVDERGANRSLHPRDFTYVVAG-QIYKPQ 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDAL 208
+++ F ++ E LL+ L + + VDE +E + A+
Sbjct: 59 ELAAFRREVE-ALLDPDALA--IAWEMLVDEGEEAELAI 94
>gi|282895501|ref|ZP_06303638.1| Ribonuclease II [Raphidiopsis brookii D9]
gi|281199534|gb|EFA74397.1| Ribonuclease II [Raphidiopsis brookii D9]
Length = 683
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 173/409 (42%), Positives = 246/409 (60%), Gaps = 11/409 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+NR DL HLKVY ID + E+DD LS L+DGR +V+IH+ADPT+++ P D +A
Sbjct: 277 VNRLDLKHLKVYTIDDESTTEIDDGLSCELLEDGRQRVWIHIADPTRWLIPEDELDLEAR 336
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RG++V+LPT PMFPE LA MSL QG +C +++ SV+L G +AEYS+ +IKP
Sbjct: 337 RRGSTVYLPTGMIPMFPEVLATGPMSLIQGRLCCSLSFSVILDDSGGVAEYSIHPCVIKP 396
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTYE E+L L ++ E E++ ++ A R WR QGAI E IKV N E
Sbjct: 397 TYRLTYEDVDEMLDLAVQAEPEIQAIAGLAQKRKTWRNNQGAISITMPEAMIKVKNDE-- 454
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG-QPQSNIDVSAFAHL 421
I++ + D++ P+ +LV+EMMIL GE A Y +N+ LP+RG L
Sbjct: 455 ---ISIDILDES-PSRQLVAEMMILAGEVAARYAQSHNIPLPFRGQPQPELPPEEELLQL 510
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P G VR A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+KA LRG
Sbjct: 511 PPGFVRFCALRRCMPKSEMS-TTPLRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAHLRG 569
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK-D 540
E PPFSA Q+ + V+ T+ + + RY+ +E+LRR E+ + ++L +++ D
Sbjct: 570 EEPPFSAEQIREVMMTVSSTTQELTMVERQTNRYYALEYLRRH-LEQVWEVIVLMWLRED 628
Query: 541 RTAALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AL+L+E +GLQ ++G+ V VKV A P+ DII +E+V
Sbjct: 629 SNLALILLEDLGLQLPMMFKRSVKLGERVLVKVALADPQKDIIQFQEIV 677
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T++V G E +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYIVNG-EGYKST 58
Query: 170 DISNFLQK 177
I FL +
Sbjct: 59 QIPKFLDQ 66
>gi|186685031|ref|YP_001868227.1| ribonuclease II [Nostoc punctiforme PCC 73102]
gi|186467483|gb|ACC83284.1| ribonuclease II [Nostoc punctiforme PCC 73102]
Length = 686
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 171/411 (41%), Positives = 245/411 (59%), Gaps = 9/411 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ NR DLTHLKVY ID + E+DD LS L DGR ++++H+ADPT+++ P D
Sbjct: 274 DSDTNRLDLTHLKVYTIDDETTTEIDDGLSWEILPDGRERLWVHIADPTRWLVPEDELDL 333
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KRG++V+LPT PMFPE LA MSL QG VC A++ ++L + G + +YS+ S
Sbjct: 334 EARKRGSTVYLPTGMIPMFPEVLATGPMSLIQGRVCCALSFGIILGTTGGVEDYSIHTSS 393
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTYE E+L L ++ E E+ ++ A R WR QGAI E IKV
Sbjct: 394 IKPTYRLTYEDVDEMLQLRVQAEPEIAAIASWAQKRKTWRYAQGAISITMPEATIKVKGD 453
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
E IN+ + D + P+ ++V+EMMI+ GE A YG +N+ LP+RGQPQ +
Sbjct: 454 E-----INIDILDDS-PSRQVVAEMMIVAGEVAARYGKAHNIPLPFRGQPQPELPPEEEL 507
Query: 420 HLPE-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
L G VR+ A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+KA
Sbjct: 508 LLLPAGFVRACAMRRCMPKSEMSI-TPLRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAH 566
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
LRGE PFSA QL+ + V T+ + + RY+ +E+LRR P+E +++
Sbjct: 567 LRGEVLPFSADQLKEVMMNVTSITQEVTMVERQTNRYYALEYLRRHPEETWDVTVLMWLR 626
Query: 539 KDRTAALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+D AL+L+E +GLQ +G+++ VKV A P+ D+I +E++
Sbjct: 627 EDSNLALILIEDLGLQLPMVFKRSVNLGEQIVVKVSHADPQKDMIQFQEII 677
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L + +RPDGK W V D+ G S S+ P+Q+T+ V G + +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGIVERPDGKTRWFVVDERGQSHSLAPRQITYTVTG-QTYKPS 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSA 210
+I++FL++ L D + L+V + I V++ + + L A
Sbjct: 59 EIASFLEQVNPYL----DPSSLEVAWEILVEDGETITPELMA 96
>gi|428218158|ref|YP_007102623.1| exoribonuclease II [Pseudanabaena sp. PCC 7367]
gi|427989940|gb|AFY70195.1| Exoribonuclease II [Pseudanabaena sp. PCC 7367]
Length = 679
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 172/410 (41%), Positives = 248/410 (60%), Gaps = 11/410 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R DLTHL VY ID + E+DD LS L DGR K++IH+ADPT+++EPG L D +A
Sbjct: 271 MARIDLTHLHVYTIDDESTTEIDDGLSVETLADGRHKLWIHIADPTRWLEPGDLLDLEAR 330
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTS++LPT PMFP LA MSL Q +VC+A++ +V L G+I ++ V S+IKP
Sbjct: 331 RRGTSLYLPTGMIPMFPPVLATGPMSLVQKQVCHALSFAVELDEAGAIVDFDVHTSLIKP 390
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
Y LTYE E+LHL +E+ +L +L++ A LR QWR QGAI+ ET ++V +P D
Sbjct: 391 NYRLTYEDTEEMLHLGVEQ--DLDLLAKYARLRNQWRRSQGAININLPETIVRV-DPNDT 447
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHL 421
+ + +E+ + +LV+EMMIL GE A + N++ +PYR Q Q ++ L
Sbjct: 448 DQLTLHLLENSF--SRQLVAEMMILAGEVGAKFAQQNSIPVPYRFQEQPDLPSEEVIVQL 505
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P GPVR AI + M + P RH LGL YVQ TSPIRRY DLL H+Q KA LRG
Sbjct: 506 PPGPVREFAICRRMTRGELSI-NPFRHAGLGLDAYVQVTSPIRRYSDLLTHFQFKAHLRG 564
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
E P+ L+ + +++ T A ++ ++RYW +E+LRRQ K + ++AL+L ++++
Sbjct: 565 EPLPYQEQDLDTLLKMIDPATYEATQIERQTVRYWSLEYLRRQGK-KVWQALLLDWLRED 623
Query: 542 TAALLLVEVGLQAAAWVSV--GAQIGDEVEVKVEEAHPRDDIIYLKEVVR 589
LL+ L + + A +G+ + V V PR DII EVV+
Sbjct: 624 ERLGLLLLEDLGLKLPIRMMRDAYVGESLNVVVSNVDPRQDIINF-EVVQ 672
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVV---PGVE-- 164
+ KG L+E K DR LAV +RP+GKK+ V D+NG + + P++V +VV P +
Sbjct: 1 MDKGTLVEVKLHGDR-RLAVVERPEGKKHIQVIDENGTAHVVHPREVEYVVKVDPESDSP 59
Query: 165 -KFDHKDISNFLQKAE 179
K+ + I F +AE
Sbjct: 60 VKYSSQKIPKFTAEAE 75
>gi|428775398|ref|YP_007167185.1| exoribonuclease II [Halothece sp. PCC 7418]
gi|428689677|gb|AFZ42971.1| Exoribonuclease II [Halothece sp. PCC 7418]
Length = 667
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 170/413 (41%), Positives = 248/413 (60%), Gaps = 10/413 (2%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D+ NR DLT KVY ID + E+DD +S L+DGR +++IH+ADPT+ ++P D
Sbjct: 257 DDSEYNRADLTQQKVYTIDDESTKEIDDGVSIETLEDGRQQIWIHIADPTRLVQPEDELD 316
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +R TS++LPT PMFP +LA MSL QG++C A++ V+L ++G I++Y++ S
Sbjct: 317 QEARRRSTSLYLPTGMIPMFPSELATGPMSLVQGQICPAMSFGVILEANGEISDYTIAAS 376
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
+KPTY LTYE E+L L + E E+ L++ A R QWR QG+I+ + E IKV+
Sbjct: 377 WVKPTYRLTYEDVDEMLELGVTAEPEIAQLAQWAQQRKQWRQSQGSINISLPEAVIKVSQ 436
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
E+ E I L ++D PA +LV+EMMIL GE A + + + LP+R QPQ +
Sbjct: 437 EEEVE--IEL-LDD--SPARQLVAEMMILTGEVAARFAIDHEIPLPFRSQPQPELPPEEE 491
Query: 419 AHLPE-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
GPVR AI M + + P RH LGL Y Q TSPIRRY+DLL H+Q+KA
Sbjct: 492 LLQLPAGPVRYCAIRGCMPRSEMS-TTPARHAGLGLEVYTQVTSPIRRYVDLLGHFQIKA 550
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
LRGE PFSA Q++ +A A + + RYW +E+LRR ++R + A++LR+
Sbjct: 551 YLRGEPCPFSAEQVQEIAYSAGSAAYEATLVERQTKRYWALEYLRRNGEQR-WSAIVLRW 609
Query: 538 IK--DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
++ D +LL ++GL+ +GD VEV+V A P D+I +E V
Sbjct: 610 LREEDNLGIILLEDLGLELPHRFQTNVDLGDRVEVEVVAADPHQDLIRFREFV 662
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EFK +R LAVA+RP+GKK+W+V DQ G S ++ P+QV + V G K +
Sbjct: 1 MEKGTLIEFKAQGER-RLAVAERPEGKKHWIVLDQWGQSHTLHPRQVEYEVGGDPK-RPQ 58
Query: 170 DISNFLQKAEDNL 182
DIS FL++ E L
Sbjct: 59 DISAFLREVEAYL 71
>gi|428779631|ref|YP_007171417.1| exoribonuclease R [Dactylococcopsis salina PCC 8305]
gi|428693910|gb|AFZ50060.1| exoribonuclease R [Dactylococcopsis salina PCC 8305]
Length = 667
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 163/408 (39%), Positives = 237/408 (58%), Gaps = 10/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTH KVY ID + E+DD +S L DGR +++IH+ADPT+ + P D++A +
Sbjct: 262 DRLDLTHQKVYTIDDESTKEIDDGVSVEILPDGRQQIWIHIADPTRLVRPDDELDQEARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP +LA MSL QG+VC A++ +V+L DG++AEY++ + +KPT
Sbjct: 322 RSTSLYLPTGMISMFPSELATGPMSLIQGKVCPAMSFAVILAEDGAVAEYTIAATWVKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+L L + E E+ L+ A R QWR QG+I+ + E IKV +
Sbjct: 382 YRLTYDDVDEMLELGVTAEPEIAQLAHWAQQRKQWRQSQGSINISLPEAVIKVN-----Q 436
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
+ A LV+EMMIL GE + + +P+R QPQ + LP
Sbjct: 437 EEEVEIELLEESQARELVAEMMILAGEVAGRFAVDKEIPIPFRSQPQPELPPEETLLQLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVRS A+ M + + P RH LGL Y Q TSPIRRY+DLL+H+Q+KA LRGE
Sbjct: 497 AGPVRSCALRGCMPRSEMG-TTPARHAGLGLEVYTQVTSPIRRYVDLLSHFQIKAYLRGE 555
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
+ PF+ Q++ +A T A + + RYW +E+LRR ER + A++LR+++ D
Sbjct: 556 ACPFTTEQVQEVAFSAASATYEATLVERQTRRYWALEYLRRHSDER-WNAIVLRWLREDD 614
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+LL ++GL+ ++GD VEV+V A P D+I +E V
Sbjct: 615 NLGIILLEDLGLELPHRFQTNVELGDRVEVEVVAADPHQDLIRFREFV 662
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EFK +R LAVA+RP+GKK+W+V DQ G S ++ P+QV + V G K +
Sbjct: 1 MEKGTLIEFKAQGER-RLAVAERPEGKKHWIVLDQWGQSHTLHPRQVEYEVGGDPK-RPQ 58
Query: 170 DISNFLQKAEDNL 182
+I +FL + E L
Sbjct: 59 EIPSFLGEVESYL 71
>gi|282901218|ref|ZP_06309147.1| Ribonuclease II [Cylindrospermopsis raciborskii CS-505]
gi|281193918|gb|EFA68886.1| Ribonuclease II [Cylindrospermopsis raciborskii CS-505]
Length = 684
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 173/409 (42%), Positives = 246/409 (60%), Gaps = 11/409 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+NR DL HLKVY ID + E+DD LS L+DGR +V+IH+ADPT+++ P D +A
Sbjct: 278 VNRLDLKHLKVYTIDDESTTEIDDGLSCELLEDGRQRVWIHIADPTRWLIPEDELDLEAR 337
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RG++V+LPT PMFPE LA MSL QG +C +++ SV+L G +AEYS+ +IKP
Sbjct: 338 RRGSTVYLPTGMIPMFPEVLATGPMSLIQGRLCCSLSFSVILDDSGGVAEYSIHPCLIKP 397
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTYE E+L L ++ E E++ ++ A R WR QGAI E IKV N E
Sbjct: 398 TYRLTYEDVDEMLDLAVQAEPEIQAIAGLARKRKTWRNNQGAISITMPEAMIKVKNDE-- 455
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG-QPQSNIDVSAFAHL 421
I++ + D++ P+ +LV+EMMIL GE A Y +N+ LP+RG L
Sbjct: 456 ---ISIDILDES-PSRQLVAEMMILAGEVAARYAKSHNIPLPFRGQPQPELPPEEELLQL 511
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P G VR A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+KA LRG
Sbjct: 512 PPGFVRFCALRRCMPKSEMS-TTPLRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAHLRG 570
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK-D 540
E PPFSA Q+ + V+ T+ + + RY+ +E+LRR E+ + ++L +++ D
Sbjct: 571 EEPPFSAEQIREVMMTVSNTTQELTMVERQTNRYYALEYLRRH-LEQVWEVIVLMWLRED 629
Query: 541 RTAALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AL+L+E +GLQ ++G+ V VKV A P+ DII +E+V
Sbjct: 630 SNLALILLEDLGLQLPMMFKRSVKLGERVLVKVALADPQKDIIQFQEIV 678
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+++ E +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYIISNGEGYKST 59
Query: 170 DISNFLQKAEDNL 182
I FL++ E L
Sbjct: 60 QIPRFLEQVEPYL 72
>gi|434399751|ref|YP_007133755.1| Exoribonuclease II [Stanieria cyanosphaera PCC 7437]
gi|428270848|gb|AFZ36789.1| Exoribonuclease II [Stanieria cyanosphaera PCC 7437]
Length = 671
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 173/409 (42%), Positives = 241/409 (58%), Gaps = 11/409 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-IKVYIHVADPTKYIEPGSLSDKDAM 242
NR DLTHLKVY ID + +E+DD LS +DG+ K++IH+ADP++ + PG D +A
Sbjct: 262 NRLDLTHLKVYTIDDESTEEIDDGLSVEYSEDGKSAKLWIHIADPSRIVTPGDELDLEAR 321
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+R TS++LPT MFP +LA MSL QG+ C A++ VVL G + EYS+ ++IKP
Sbjct: 322 RRSTSLYLPTGMISMFPSELATGPMSLIQGQTCAALSFGVVLDETGLVKEYSIHPTLIKP 381
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTY+ E+L L + +E E+ L++ A+LR +WR QQG+I E+ IKV E+
Sbjct: 382 TYRLTYDDVDEMLDLGVTKEPEIAELAKWASLRRKWRQQQGSIQILMPESLIKVK--ENE 439
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG-QPQSNIDVSAFAHL 421
E II L E + + +LV+EMMIL GE YG +NL LP+RG L
Sbjct: 440 EIIIELLDESK---SRQLVAEMMILAGEVAGKYGQEHNLPLPFRGQPQPELPPEEELLQL 496
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P GPVR A+ + M + I P RH LGL Y+Q TSPIRRY DLLAH+Q+KA LR
Sbjct: 497 PPGPVRFCALRRCMPRSEIS-TTPARHASLGLDSYIQVTSPIRRYTDLLAHFQIKAHLRN 555
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK-- 539
ES PFS +L+ + V A + + RYW +E+LRR R + L+LR+++
Sbjct: 556 ESLPFSGEELQEIIYSVANSAYEATLVERQTNRYWGLEYLRRN-SNRVWGVLVLRWLREE 614
Query: 540 DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
DR +LL ++GL+ +GD +EV+V A P D I +E+
Sbjct: 615 DRLGIILLEDLGLELPHRFERAVTLGDRLEVQVTRADPHRDEIRFREIT 663
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 62/94 (65%), Gaps = 7/94 (7%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAVA+RP+GKK+W+V D++G S I+PQ+V + V G +
Sbjct: 1 MEKGTLIEFRIQGER-RLAVAERPEGKKDWIVIDESGQSHKIRPQRVEYTVNG-GLYKPS 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEAD 202
DI+NF+ +A+ L D + L+V + I V++ D
Sbjct: 59 DIANFINEAQSYL----DPSSLEVAWEILVEDGD 88
>gi|119488090|ref|ZP_01621534.1| Ribonuclease II [Lyngbya sp. PCC 8106]
gi|119455379|gb|EAW36518.1| Ribonuclease II [Lyngbya sp. PCC 8106]
Length = 672
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 240/408 (58%), Gaps = 11/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT LKVY ID + E+DD LS + DG+ +++IH+ADPT+ + PG D +A +
Sbjct: 264 DRLDLTDLKVYTIDDESTREIDDGLSVEFMADGQQRLWIHIADPTRLLCPGDELDLEARR 323
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+V+LPT PMFP +LA MSL +G++C A++ V+L G + +YS+ S IKPT
Sbjct: 324 RTTTVYLPTGIIPMFPSELATGPMSLVEGKLCCALSFGVILDESGQVKDYSIHASTIKPT 383
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+LHL + E E++ L+ R QWR QGAI E+ IKV E
Sbjct: 384 YRLTYDDVDEMLHLGITAEPEIEALATWTKRRKQWRDSQGAISIYMPESLIKVEEDE--- 440
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ-SNIDVSAFAHLP 422
I + V D + P+ ++V+EMMIL GE A YG +NL LPYR QPQ LP
Sbjct: 441 --ITIKVLDDS-PSRQIVAEMMILTGEVAARYGQAHNLDLPYRSQPQPELPPAEELLLLP 497
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VRS A+ + M + + P RH L L Y Q TSPIRRY DLL H+Q+KA LRGE
Sbjct: 498 AGAVRSCAMRRYMPRSEVSL-TPARHASLALETYTQVTSPIRRYSDLLTHFQIKAHLRGE 556
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+PPFS Q++ M + + A ++ + RYW +EFLRR ++ + A++LR++++ +
Sbjct: 557 TPPFSTEQMQEMVMSLGPAVKEASKVERETNRYWSLEFLRRH-LDQTWEAILLRWLREDS 615
Query: 543 AALLLVEVGLQAAAWVSV--GAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
LL+ L + + A++G+ VKV PR DII +E+
Sbjct: 616 NLGLLLLEELAVELPMRLNRNAELGERFTVKVAHVDPRQDIIQFQEIT 663
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L VA RP+GKK+W+V D G S +I P+QVT+ V G + +
Sbjct: 1 MEKGTLIEFRVHGER-RLGVADRPEGKKHWIVIDDQGGSHTIHPRQVTYEVAG-QTYKPS 58
Query: 170 DISNFLQKAE 179
DI F Q+ E
Sbjct: 59 DIPTFFQELE 68
>gi|332712186|ref|ZP_08432114.1| exoribonuclease R [Moorea producens 3L]
gi|332348992|gb|EGJ28604.1| exoribonuclease R [Moorea producens 3L]
Length = 685
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 166/407 (40%), Positives = 240/407 (58%), Gaps = 10/407 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLK+Y ID + E+DD LS L+DG +++IH+ADPT+ + PG D +A +
Sbjct: 261 DRLDLTHLKLYTIDDESTQEIDDGLSIEDLEDGTQRLWIHIADPTRLVMPGDNLDLEARR 320
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP +LA MSL QG+VC A++ V+L DG+I +Y + S+IKPT
Sbjct: 321 RSTTIYLPTGMIPMFPSELATGPMSLVQGQVCGALSFGVILDQDGAIYDYQIHPSLIKPT 380
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E EL ++ A R +WR QGAI E+ IKV N D +
Sbjct: 381 YRLTYEDVDEMLQLGVQAETELFAIANLAVRRQKWRKSQGAISIHMPESVIKVGN--DDQ 438
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
I + +ED P+ ++V+EMMIL GE YG + + LP+RGQPQ + LP
Sbjct: 439 ITIEV-LED--SPSRQMVAEMMILAGEVAGRYGQAHQIPLPFRGQPQPELPSQEELLLLP 495
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR A+ + M + + P RH L L Y Q TSPIRRY DL+ H+Q+KA LRG+
Sbjct: 496 AGPVRFCAMRRCMPRSEMSI-TPTRHASLALETYTQVTSPIRRYTDLMTHFQLKAHLRGD 554
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
PF A L V + A + + +YW +E+LRR P + ++ L+L + + +
Sbjct: 555 PLPFEAEDLLETMQSVTRTAKDASEVERDTNKYWGLEYLRRNPNQV-WQVLVLSWWRENE 613
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
+LL E+GL+ Q+GD + VKV A PR ++I+ +E+
Sbjct: 614 NKGNILLEELGLELPMRFQRSVQLGDRLHVKVSHADPRKEVIHFQEL 660
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVV 160
++KG L+EF+ +R LAV RP+GK + + DQ G + P+QVT+ V
Sbjct: 1 MEKGTLIEFRLQGER-HLAVVDRPEGKNHLIALDQRGKLHKLHPRQVTYTV 50
>gi|427718659|ref|YP_007066653.1| exoribonuclease II [Calothrix sp. PCC 7507]
gi|427351095|gb|AFY33819.1| Exoribonuclease II [Calothrix sp. PCC 7507]
Length = 683
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 240/407 (58%), Gaps = 9/407 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHLKVY ID + E+DD LS L DGR +++H+ADPT+ + P D +A K
Sbjct: 278 TRLDLTHLKVYTIDDESTTEIDDGLSWESLPDGREHLWVHIADPTRLLAPEDDLDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG VC A++ VVL G++AE+++ S IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEVLATGPMSLVQGRVCCALSFGVVLDQTGAVAEFNIYPSFIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E+ ++ A R WR QGAI E IKV E
Sbjct: 398 YRLTYEDVDEMLELGVEAEPEIAAIALWAKRRRNWRYDQGAISINMPEAMIKVKGDE--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I++ + D + + +LV+EMMIL GE A YG +N+ LP+RGQPQ +
Sbjct: 455 --ISIDILDDSS-SRQLVAEMMILAGEVAARYGQTHNIPLPFRGQPQPELPPEEELLQLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+KA LRGE
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-TPVRHAGLGLNTYTQATSPIRRYSDLLTHFQLKAHLRGE 570
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PFSA QL+ + V T+ + + RYW +E+LRRQP++ +++ +D
Sbjct: 571 VLPFSAEQLKEVMMTVTSTTQEVTMVERQTNRYWALEYLRRQPEQVWQVTVLMWLREDSN 630
Query: 543 AALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AL+L+E +GLQ +G+++ VKV A P+ D+I +E++
Sbjct: 631 LALILLEDLGLQLPMSFRRDVNLGEQLLVKVGLADPQKDMIQFQEII 677
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+ KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G + +
Sbjct: 1 MDKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNG-QTYKPT 58
Query: 170 DISNFLQKAEDNL 182
+I +FL++ + L
Sbjct: 59 EIDHFLEQVKPYL 71
>gi|427733634|ref|YP_007053178.1| exoribonuclease R [Rivularia sp. PCC 7116]
gi|427368675|gb|AFY52631.1| exoribonuclease R [Rivularia sp. PCC 7116]
Length = 681
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 170/410 (41%), Positives = 243/410 (59%), Gaps = 15/410 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY +D + E+DD LS L D R +V++H+ADPT+++ P D DA K
Sbjct: 278 NRLDLTHLKVYTVDDETTTEIDDGLSWETLPDNRERVWVHIADPTRWLVPEDELDLDARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QGE+C A++ +VL G + EYS+ S+IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEILATGPMSLIQGEICCALSFGIVLDETGGVEEYSIHASLIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE ++L + EE E+ L + A R WR +QGAI E IKV + E
Sbjct: 398 YRLTYEDVNDILESGVREEPEIAALGKWAKKRKSWRYEQGAISINMPEAMIKVKDDE--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+N+ + D + + +LV+EMMIL GE A YG +++ LP+RGQPQ + L
Sbjct: 455 --VNIDLLDDSH-SRQLVAEMMILTGEVAARYGKTHSIPLPFRGQPQPELPPEEELLLLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR+ A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+KA LRG+
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-NPLRHAGLGLETYTQATSPIRRYSDLLTHFQIKAHLRGD 570
Query: 483 SPPFSAGQLEGMASIVNMQTRIARR---LSNTSLRYWIIEFLRRQPKERQYRALILRFIK 539
PFSA EG+ ++ T I + + + RYW +E+LRR + +++ +
Sbjct: 571 VLPFSA---EGLKEVMMNVTSITQEVVMVERQTNRYWALEYLRRHLNKAWDTTVLMWLRE 627
Query: 540 DRTAALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
D AL+L+E +GLQ + +G+E+ VKV + P+ DII +E++
Sbjct: 628 DSNLALILLEDLGLQLPMFFKRAVNLGEEISVKVTHSDPQKDIIQFQEII 677
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V +RPDGK W+V D+ G S S+ P+Q T+ V G + +
Sbjct: 1 MEKGTLVEFRNQGER-RLGVVERPDGKNRWIVLDERGQSTSLAPRQFTYKVVG-QTYKPS 58
Query: 170 DISNFLQKAEDNL 182
+I +FL++ E L
Sbjct: 59 EIPDFLKQVESYL 71
>gi|170077199|ref|YP_001733837.1| ribonuclease II [Synechococcus sp. PCC 7002]
gi|169884868|gb|ACA98581.1| ribonuclease II [Synechococcus sp. PCC 7002]
Length = 670
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 172/409 (42%), Positives = 250/409 (61%), Gaps = 13/409 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLK Y ID + E+DD LS L+DG KV+IH+ADPT+ + PG D +A +
Sbjct: 263 NRLDLTHLKTYTIDDESTSEIDDGLSIETLEDGLHKVWIHIADPTRLLSPGDELDLEARR 322
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFPE+LA MSLRQG+VC A++ V+L +G+IA+Y + S +KPT
Sbjct: 323 RSTSLYLPTGMISMFPEELATGPMSLRQGQVCAALSFGVLLTENGAIADYEITPSWVKPT 382
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+LHL ++ E+E+ +L++ A R +WR QG+I E IKV +
Sbjct: 383 YRLTYDDVDEMLHLRIQAESEIALLADFAHKRRKWRDAQGSISIKMPEASIKVQDE---- 438
Query: 364 PIINLYVED-QADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
N+++E A + LV+EMMIL GE YG + L LP+RGQPQ + L
Sbjct: 439 ---NIFIEVLHASMSRELVAEMMILAGEVAGHYGRTHGLPLPFRGQPQPELPPQEELLLL 495
Query: 423 E-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
GPVR+ A+ + M + + PVRH LGL Y+Q TSPIRRY DLLAH+Q+KA LRG
Sbjct: 496 PAGPVRACAVRRCMPRSEMG-TNPVRHASLGLDSYIQVTSPIRRYTDLLAHFQIKAHLRG 554
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK-- 539
+ PFS +L+ + V ++ A + + RYW +E+LRR ++ ++ L+LR+++
Sbjct: 555 DELPFSVDELKEILYSVVTSSQEAVHVERQTNRYWSLEYLRRN-ADQVWQGLVLRWLRED 613
Query: 540 DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
++ +LL E+GL+ +GD +EVKV +A P D I +E++
Sbjct: 614 EKLGIILLEELGLELPHRFERAVALGDRLEVKVSQADPHKDEIRFRELL 662
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +RVL AVA+RP+GKK+W+V D G S ++PQ+V + V G +D
Sbjct: 1 MEKGQLIEFRLQGERVL-AVAERPEGKKDWIVIDGRGQSHKLRPQRVEYTVAG-SPYDPT 58
Query: 170 DISNFLQKAE-----DNL 182
+I +F +++ DNL
Sbjct: 59 EIPSFFTESQALVDPDNL 76
>gi|414079583|ref|YP_007001007.1| ribonuclease II [Anabaena sp. 90]
gi|413972862|gb|AFW96950.1| ribonuclease II [Anabaena sp. 90]
Length = 686
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 170/407 (41%), Positives = 246/407 (60%), Gaps = 9/407 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + E+DD LS L DG+ ++++H+ADPT+ + P D +A K
Sbjct: 278 NRLDLTHLKVYTIDDESTTEIDDGLSWEILPDGKERLWVHIADPTRLLMPDDELDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG+VC A++ V+L + GS+ +Y + +IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEVLATGPMSLIQGKVCCALSFGVILDAVGSVEDYCIHTGLIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+L L ++ E E++ ++ A +R WR QGAI E IKV + +
Sbjct: 398 YRLTYQDVDEMLELGVQAEPEIEAIANWAKIRKTWRYGQGAISINMPEAMIKVKDDD--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
IN+ V D + + +LV+EMMIL GE A YG +N+ LP+RGQPQ + L
Sbjct: 455 --INIDVLDDSS-SRQLVAEMMILAGEVAARYGQTHNIPLPFRGQPQPELPPEEELLLLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VRS A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+KA LRGE
Sbjct: 512 AGFVRSCAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAHLRGE 570
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PFSA QL+ + V+ T+ A + + RY+ +E+LRR P++ +++ +D
Sbjct: 571 GLPFSAEQLKEVMMTVSSITQEATMVERQTNRYYALEYLRRHPEQVWQVTVLMWLREDSN 630
Query: 543 AALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
L+L+E +GLQ +G+ + VKV A P+ D+I+ +E++
Sbjct: 631 LGLILLEDLGLQLPMSFRRSVSLGENLLVKVSLADPQKDMIHFQEIM 677
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+ KG L+EF+ DR L V RPDGK +W V D+ G S +IK Q T+ V G + +
Sbjct: 1 MDKGTLVEFRVKGDR-RLGVIDRPDGKTSWFVVDERGQSHNIKNNQFTYTVNG-QTYKPG 58
Query: 170 DISNFLQKAEDNL 182
+I+ FL + + L
Sbjct: 59 EIAEFLSQVQPYL 71
>gi|443323592|ref|ZP_21052597.1| exoribonuclease R [Gloeocapsa sp. PCC 73106]
gi|442786772|gb|ELR96500.1| exoribonuclease R [Gloeocapsa sp. PCC 73106]
Length = 667
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 170/422 (40%), Positives = 250/422 (59%), Gaps = 12/422 (2%)
Query: 172 SNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+N D +R DLTHLKVY ID + E+DD LS R+ K++IH+ADPT+ +
Sbjct: 251 TNLTTPPPDPDRDRLDLTHLKVYTIDDESTKEIDDGLSVERIDSQTNKIWIHIADPTRLM 310
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
PG D +A +R T+++LPT MFP +LA MSL QG+VC A++ VVL S G +
Sbjct: 311 SPGDELDLEARRRSTTLYLPTGMISMFPTELATGPMSLVQGKVCPALSFGVVLDSTGGVL 370
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
+Y + S+IKPTY LTYE E+L L+++ E E+ IL +A RL+WR +QG+I+ E
Sbjct: 371 DYCIHASLIKPTYRLTYEDVDEMLELDIQGEPEISILGASAKQRLKWRTEQGSINIQMPE 430
Query: 352 TRIKV-ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
+ IKV AN E I + + D + + +LV+EMMIL GE Y ++L +P+R QPQ
Sbjct: 431 SSIKVSANDE-----ITIELLDNSR-SRQLVAEMMILAGEVGGRYCQDHHLPVPFRSQPQ 484
Query: 411 SNIDVSAFAHLPE-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDL 469
+ L GPVRS A+ + M + I P RH LGL Y Q TSPIRRY DL
Sbjct: 485 PELPPEEELILLPAGPVRSCALRRCMPRSEISI-NPARHASLGLNTYTQVTSPIRRYTDL 543
Query: 470 LAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQ 529
LAH+Q+KA LRG+ PFS +++ + V + A + + RYW +E+LRRQP E
Sbjct: 544 LAHFQLKASLRGDPLPFSEEKMQEILFGVIDSVKEASSVERQTNRYWSLEYLRRQP-EGV 602
Query: 530 YRALILRFIK-DRTAALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++ L+LR+++ D AL+++E +G++ A +GD ++++V P D I +E+
Sbjct: 603 WQVLVLRWLREDENLALVMLEDLGIELAHRFERNVSLGDRLDLQVVRVDPHRDEIRFREM 662
Query: 588 VR 589
+
Sbjct: 663 TQ 664
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ R LAV RP+GKK+W+V DQ+G ++PQ+V + + G + +
Sbjct: 1 MEKGTLIEFRLQGHR-RLAVVDRPEGKKDWIVIDQSGHPHKLRPQRVEYTING-GPYRSE 58
Query: 170 DISNFLQKAEDNL 182
DI +FL++ E L
Sbjct: 59 DIPSFLKQVEPYL 71
>gi|254423969|ref|ZP_05037687.1| RNB-like protein [Synechococcus sp. PCC 7335]
gi|196191458|gb|EDX86422.1| RNB-like protein [Synechococcus sp. PCC 7335]
Length = 681
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 164/410 (40%), Positives = 249/410 (60%), Gaps = 13/410 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + E+DD LS L DGR K++IH+ADPT +I + D +A +
Sbjct: 263 DRVDLTHLKVYTIDDESTQEIDDGLSCETLADGRQKLWIHIADPTYWISLNGILDTEARR 322
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+V+LPT PMFP +LA MSL QG++CNA++ SV+L DGS+AEYS+ S++KPT
Sbjct: 323 RCTTVYLPTGVIPMFPFELAAGPMSLVQGQICNALSFSVLLAEDGSVAEYSIQPSVVKPT 382
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ A E++ L ++ E+EL L + A RL WR QGAID E+ IKV +
Sbjct: 383 YRLTYDDADEMIELGVQAESELLALFDHAKQRLSWRKSQGAIDIQLPESVIKVDD----- 437
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA-HLP 422
+I + + + ++ + +V+EMMIL GE A YG N + LP+R QPQ + L
Sbjct: 438 DVITIDILESSN-SREMVAEMMILTGEIAARYGEDNKIPLPFRAQPQPELPPEEELMQLE 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR SAI + M + ++ P RH LGL Y Q TSPIRRY DL+ H+Q+KA LRG
Sbjct: 497 AGWVRDSAIRRCMTRSEMNI-TPARHATLGLDRYCQVTSPIRRYTDLMGHFQIKAHLRGA 555
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKE---RQYRALILRFIK 539
PF+ ++ + + V+ A + + +YW IE+L+RQ + + + +++R+++
Sbjct: 556 DLPFTPVEMPEIIASVSNAAYEAVMVERQTKKYWAIEYLKRQNEANPGQPWDVIMVRWLR 615
Query: 540 DRTAALLLV--EVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
+ + L++ ++GL+ ++G+ + ++V A PR ++I KEV
Sbjct: 616 EHESLGLIIFEDLGLEFVMRFDRAVEVGERLTIQVSYADPRQEMIRFKEV 665
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EFK LAVA RP+GKKNW++ DQ G S +I P+Q+ + V ++
Sbjct: 1 MEKGTLIEFKLKGS-PYLAVADRPEGKKNWVLVDQAGQSHTIHPRQIIYEVSDA-SYEPT 58
Query: 170 DISNFLQKAE-----DNL 182
+I F +A+ DNL
Sbjct: 59 EIEEFTTEAQSYIDPDNL 76
>gi|427723549|ref|YP_007070826.1| exoribonuclease II [Leptolyngbya sp. PCC 7376]
gi|427355269|gb|AFY37992.1| Exoribonuclease II [Leptolyngbya sp. PCC 7376]
Length = 670
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 247/408 (60%), Gaps = 11/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL+HLK Y ID + E+DD LS L DG KV+IH+ADPT+ + P D +A +
Sbjct: 263 HRLDLSHLKTYTIDDESTSEIDDGLSVEALPDGGHKVWIHIADPTRLLSPNDDLDLEARR 322
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP +LA MSL QG+VC A++ V+L +G+IA+YS+ S +KPT
Sbjct: 323 RSTSLYLPTGMISMFPVELATGPMSLIQGQVCAALSFGVLLTEEGAIADYSIHPSWVKPT 382
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+LHL ++ E E+ +L++ + R WR QG+I E IKV +D +
Sbjct: 383 YRLTYDDVDEMLHLGIQAEPEIALLADFSKQRAAWRNSQGSIKIKMPEASIKV---KDED 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
I + +A + LV+EMMIL GE YG +NL LP+RGQPQ + LP
Sbjct: 440 VTIEVL---EASISRELVAEMMILAGEVAGKYGVEHNLPLPFRGQPQPELPSDQELLLLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR+ A+ + M + PVRH LGL Y+Q TSPIRRY DLLAH+Q+KA LRG+
Sbjct: 497 AGPVRACAVRRCMPRGEMG-TNPVRHASLGLDSYIQVTSPIRRYTDLLAHFQIKAHLRGD 555
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
PFS+ +L+ + V ++ A + + RYW +E+LRR ++ ++ ++LR+++ +
Sbjct: 556 ELPFSSEELQEILFSVVTSSKEAGLVERQTNRYWSLEYLRRN-ADQVWQGMVLRWLREDE 614
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+ LLL E+GL+ +GD +EVKV +A P D I +E++
Sbjct: 615 KLGVLLLEELGLELPHRFERPVTLGDRLEVKVSQADPHKDEIRFRELL 662
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+++G L+EF+ +R LLAVA+RP+GKK+W+V D G S ++PQ+V + V G +
Sbjct: 1 MEQGQLIEFRLQGER-LLAVAERPEGKKDWIVVDAKGQSHKLRPQRVEYTVAG-SPYLST 58
Query: 170 DISNFLQKAEDNL 182
DI FL+ E L
Sbjct: 59 DIPAFLKVCESFL 71
>gi|428207110|ref|YP_007091463.1| exoribonuclease II [Chroococcidiopsis thermalis PCC 7203]
gi|428009031|gb|AFY87594.1| Exoribonuclease II [Chroococcidiopsis thermalis PCC 7203]
Length = 687
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 173/411 (42%), Positives = 246/411 (59%), Gaps = 19/411 (4%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHLKVY ID E+DD +S L DGR +++IH+ADPT+++ P D +A +
Sbjct: 280 QRLDLTHLKVYTIDDQSTSEIDDGVSWEVLADGRERLWIHIADPTRWLIPEDELDLEARR 339
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+++LPT MFP LA MSL QG+VC A++ V+L + G++ EY++ S+IKPT
Sbjct: 340 RGTTMYLPTGMSSMFPVALATGPMSLIQGQVCCALSFGVILDAAGAVQEYTIHASLIKPT 399
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E E+ ++ A R WR QGAI + ET IKV + E
Sbjct: 400 YRLTYEDVDEMLDLGVQAEPEIAAIANWARCRQAWRQSQGAISISLPETAIKVKDDEITI 459
Query: 364 PIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
++N D + R LV+EMMIL GE YG +NLALP+RGQPQ +
Sbjct: 460 EVLN-------DSSSRQLVAEMMILAGEVAGRYGQAHNLALPFRGQPQPELPPEEELLQL 512
Query: 423 E-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
G VR+ A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+KA LRG
Sbjct: 513 PAGFVRACAMRRCMPKSEMSI-TPSRHAGLGLEMYTQATSPIRRYSDLLTHFQLKAHLRG 571
Query: 482 ESPPFSAGQL-EGMASIVNM--QTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
E+PPFSA L E M S+ M + + R +N RYW +E+LRR ++ ++A++L ++
Sbjct: 572 ETPPFSAEALREVMQSVFAMTQEMSLVERQTN---RYWGLEYLRRHAQD-VWQAIVLMWL 627
Query: 539 KD--RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++ R A +L+ ++GLQ G +G+++ +KV PR D I +EV
Sbjct: 628 REDSRLALILIEDLGLQLPMTFKRGVSLGEQILIKVAYVDPRQDTIQFQEV 678
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
+ KG+L+EF+ DR L V RPDGK W V D G S S+ P+Q T+ + G + +
Sbjct: 2 TIDKGMLVEFRVQGDR-RLGVVDRPDGKTRWFVIDDRGQSHSLAPRQFTYEIRG-QSYKP 59
Query: 169 KDISNFLQKAEDNL 182
DI+NFL + + L
Sbjct: 60 SDIANFLAEVQPYL 73
>gi|126660660|ref|ZP_01731761.1| ribonuclease II [Cyanothece sp. CCY0110]
gi|126618053|gb|EAZ88821.1| ribonuclease II [Cyanothece sp. CCY0110]
Length = 670
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 170/421 (40%), Positives = 247/421 (58%), Gaps = 11/421 (2%)
Query: 172 SNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
S++LQ D +R DLTHLKVY ID + E+DD LS L D R+K++IH+ADPT+
Sbjct: 249 SSYLQTLPPDADSDRLDLTHLKVYTIDDESTKEIDDGLSVEYLDDERVKLWIHIADPTRL 308
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+ PG D +A KR T+++LPT MFP +LA MSLRQGE+C A++ VVL S+G++
Sbjct: 309 VTPGDELDLEARKRSTTLYLPTGMISMFPVELATGPMSLRQGELCAALSFGVVLDSEGAV 368
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
A++S+ S+IKPTY LTY E+L L + E+EL +L+EAA R +WR QG+I
Sbjct: 369 ADFSIHASVIKPTYRLTYHDVDEMLQLGITAESELAVLAEAAKKRHKWRQSQGSITIKMP 428
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E IKV + + + + +LV+EMMIL GE TY N + +P+RGQPQ
Sbjct: 429 EAIIKVKS-----EEEIIIELLETSISRQLVAEMMILAGEVAGTYCRENGIPVPFRGQPQ 483
Query: 411 SNIDVS-AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDL 469
+ LP GPVR+ A+ + M + + P RH LGL Y Q TSPIRRY DL
Sbjct: 484 PELPSDEELLLLPAGPVRACALRRCMPRSEMG-TLPSRHASLGLNNYTQVTSPIRRYTDL 542
Query: 470 LAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQ 529
L H+Q+KA LRG+ PF ++ + V + + A + + RYW +EFLRR ++
Sbjct: 543 LTHFQLKAHLRGDELPFPLDVMQQILYSVTLSAQEASFVERQTNRYWGLEFLRRN-ADQV 601
Query: 530 YRALILRFIKDRT--AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++ L+LR++++ +LL E+GL+ +GD + V+V A P D I +E+
Sbjct: 602 WQGLVLRWLREDEGLGVILLEELGLELPHRFERSVSLGDRLNVQVSRADPHRDEIRFREM 661
Query: 588 V 588
+
Sbjct: 662 L 662
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ + + L V RP+GKK+W+V D +G S ++PQ++ + VPG +
Sbjct: 1 MEKGKLVEFRVNGE-PRLGVVDRPEGKKDWIVIDNDGHSHKLRPQRIDYEVPG-GSYSSN 58
Query: 170 DISNFLQKAEDNL 182
DI FLQ+ +D L
Sbjct: 59 DIPQFLQEIQDYL 71
>gi|440684659|ref|YP_007159454.1| Exoribonuclease II [Anabaena cylindrica PCC 7122]
gi|428681778|gb|AFZ60544.1| Exoribonuclease II [Anabaena cylindrica PCC 7122]
Length = 685
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 166/408 (40%), Positives = 239/408 (58%), Gaps = 9/408 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+NR DLTHLKVY ID + E+DD LS L DG+ ++++H+ADPT+++ P D +A
Sbjct: 277 VNRLDLTHLKVYTIDDESTTEIDDGLSWELLPDGQERLWVHIADPTRWLIPEDELDLEAR 336
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG++V+LPT PMFPE LA MSL QG++C A++ +VL+ GS+ +YS+ +++KP
Sbjct: 337 KRGSTVYLPTGMIPMFPEVLATGPMSLVQGKICCALSFGIVLNQTGSVEDYSIHPTLMKP 396
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTYE E+L L +E E E+ ++ A R WR QGAI E IKV + +
Sbjct: 397 TYRLTYEDVDEMLELGVEAEPEIAAIANLAKRRKTWRYNQGAISINMPEAMIKVKDDDIS 456
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG-QPQSNIDVSAFAHL 421
I++ Q LV+EMMIL GE A YG +N+ LP+RG L
Sbjct: 457 IDILDDSSSRQ------LVAEMMILAGEVAARYGQTHNIPLPFRGQPQPELPPEEELLQL 510
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P G VRS A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+KA LRG
Sbjct: 511 PPGFVRSCAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAHLRG 569
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
E PFS QL+ + V T+ + + RY+ +E+LRR P++ +++ +D
Sbjct: 570 EVLPFSPEQLKEVMMTVTSTTQEVTMVERQTNRYYALEYLRRHPEQVWQITVLMWLREDS 629
Query: 542 TAALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AL+L+E +GLQ +G+++ VKV A P+ D+I +E++
Sbjct: 630 NLALILLEDLGLQLPMAFRRSVNLGEQLSVKVSLADPQKDMIQFQEII 677
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+ KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T++V G + +
Sbjct: 1 MDKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQLTYIVNG-QSYQPS 58
Query: 170 DISNFLQK 177
+I+NFL++
Sbjct: 59 EITNFLEQ 66
>gi|284929340|ref|YP_003421862.1| exoribonuclease R [cyanobacterium UCYN-A]
gi|284809784|gb|ADB95481.1| exoribonuclease R [cyanobacterium UCYN-A]
Length = 671
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 162/408 (39%), Positives = 238/408 (58%), Gaps = 10/408 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLKVY ID + +E+DD LS L++ IK++IH+ADPT I PG D +A KR
Sbjct: 263 RIDLTHLKVYTIDDESTEEIDDGLSVEVLENNIIKLWIHIADPTYLISPGDELDLEARKR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
T+++LPT T MFP +LA MSLRQG++C +++ V+L +G++ +YS++ S IKPTY
Sbjct: 323 STTLYLPTGTISMFPTELATGPMSLRQGQLCPSLSFGVILDENGAVLDYSINTSFIKPTY 382
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY E+L L + E EL IL++A+ R WR QG+I E IKV + + E
Sbjct: 383 RLTYNDVNEILQLGITAEPELAILAKASKQRYCWRKSQGSITIKMPEASIKVKSED--EI 440
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE- 423
II+L + + +LV+EMMIL GE Y NN+ +P+RGQPQ + L
Sbjct: 441 IIDLL---ETSVSRQLVAEMMILAGEVAGDYCKKNNIPVPFRGQPQPELPSEEELLLLPA 497
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
GPVRS A+ + M + P RH LGL Y Q TSPIRRY DLL H+Q+KA L +S
Sbjct: 498 GPVRSCALRRCMPKGEMA-TIPYRHSSLGLDYYTQVTSPIRRYTDLLTHFQIKAHLSNQS 556
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTA 543
PF+ ++ + V + + A + + RYW +EFLRR ++ ++ L+LR++++
Sbjct: 557 LPFTLDMMQNILYSVTLSAQEASFVERQTNRYWGLEFLRRN-TDQVWQGLVLRWLREDEG 615
Query: 544 ALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 589
+++ L + Q+GD + V+V + P D I +EV +
Sbjct: 616 LGIILLEELGLELPHYFERSVQLGDHINVQVSRSDPYRDEIRFREVFK 663
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPG 162
++KG L+EF+ + +R LAV RP+GKK+W+V D G+S ++ Q++ + V G
Sbjct: 1 MEKGKLIEFRINGER-RLAVVDRPEGKKDWIVIDSEGSSYKLRQQKIEYEVIG 52
>gi|425443645|ref|ZP_18823717.1| putative enzyme [Microcystis aeruginosa PCC 9443]
gi|389734195|emb|CCI02125.1| putative enzyme [Microcystis aeruginosa PCC 9443]
Length = 671
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 165/414 (39%), Positives = 245/414 (59%), Gaps = 12/414 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVHPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV- 356
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV- 415
AN E I + ++ + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 ANDE-----ITIELQ-EVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPD 490
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 491 EELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Query: 476 KACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALIL 535
KA LRG+ PF+ +++ + V + A + + RYW +EFLRRQ ++ ++AL+L
Sbjct: 550 KAHLRGDQLPFTRDRMQEILYSVASSAQEATSVERQTNRYWSLEFLRRQ-GDQVWQALVL 608
Query: 536 RFIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
R++++ L++ L +GD +V+V + P D I +E+
Sbjct: 609 RWLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ G ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKGGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|425441239|ref|ZP_18821520.1| putative enzyme [Microcystis aeruginosa PCC 9717]
gi|389718110|emb|CCH97886.1| putative enzyme [Microcystis aeruginosa PCC 9717]
Length = 671
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 244/413 (59%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS- 416
+ + E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 D--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 550
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V + A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 551 AHLRGDQLPFTRDRMQEILYSVASSAQEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 609
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V + P D I +E+
Sbjct: 610 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|422304064|ref|ZP_16391413.1| putative enzyme [Microcystis aeruginosa PCC 9806]
gi|389790907|emb|CCI13274.1| putative enzyme [Microcystis aeruginosa PCC 9806]
Length = 671
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 244/413 (59%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E++IL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVRILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS- 416
+ + E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 D--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 550
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V + A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 551 AHLRGDKLPFTRDRMQEILYSVASSAQEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 609
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V A P D I +E+
Sbjct: 610 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRADPHRDEIRFREL 662
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ G +++
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYLIKGGPS-NYR 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|425435093|ref|ZP_18815553.1| putative enzyme [Microcystis aeruginosa PCC 9432]
gi|389675171|emb|CCH95667.1| putative enzyme [Microcystis aeruginosa PCC 9432]
Length = 671
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 165/413 (39%), Positives = 242/413 (58%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVRPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 A--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 550
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 551 AHLRGDQLPFTRDRMQEILYSVASSALEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 609
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V + P D I +E+
Sbjct: 610 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFLQ+ + L
Sbjct: 59 EIGNFLQEVQPYL 71
>gi|425458520|ref|ZP_18838008.1| putative enzyme [Microcystis aeruginosa PCC 9808]
gi|389827397|emb|CCI21362.1| putative enzyme [Microcystis aeruginosa PCC 9808]
Length = 671
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 165/413 (39%), Positives = 242/413 (58%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVRPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 A--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 550
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 551 AHLRGDQLPFTRDRMQEILYSVASSALEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 609
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V + P D I +E+
Sbjct: 610 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ G ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKGGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|425471402|ref|ZP_18850262.1| putative enzyme [Microcystis aeruginosa PCC 9701]
gi|389882731|emb|CCI36838.1| putative enzyme [Microcystis aeruginosa PCC 9701]
Length = 671
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 243/413 (58%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS- 416
+ + E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 D--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 550
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 551 AHLRGDKLPFTRDRMQEILYSVASSALEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 609
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V + P D I +E+
Sbjct: 610 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|166367429|ref|YP_001659702.1| ribonuclease II [Microcystis aeruginosa NIES-843]
gi|166089802|dbj|BAG04510.1| ribonuclease II [Microcystis aeruginosa NIES-843]
Length = 671
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/413 (39%), Positives = 244/413 (59%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E++IL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVRILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS- 416
+ + E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 D--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 550
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V + A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 551 AHLRGDQLPFTRDRMQEILYSVASSAQEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 609
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V + P D I +E+
Sbjct: 610 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I+NFL++ + L
Sbjct: 59 EIANFLREVQPYL 71
>gi|425452115|ref|ZP_18831933.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|389766224|emb|CCI08082.1| putative enzyme [Microcystis aeruginosa PCC 7941]
Length = 671
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 165/413 (39%), Positives = 242/413 (58%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVRPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS- 416
+ E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 A--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 550
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 551 AHLRGDQLPFTRDRMQEILYSVASSALEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 609
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V + P D I +E+
Sbjct: 610 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I+NFL++ + L
Sbjct: 59 EIANFLREVQPYL 71
>gi|425455257|ref|ZP_18834977.1| putative enzyme [Microcystis aeruginosa PCC 9807]
gi|389803880|emb|CCI17236.1| putative enzyme [Microcystis aeruginosa PCC 9807]
Length = 672
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 165/414 (39%), Positives = 244/414 (58%), Gaps = 12/414 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVHPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV- 356
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS 416
AN E I + ++ + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 ANDE-----ITIELQ-EVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPD 490
Query: 417 -AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 491 EELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Query: 476 KACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALIL 535
KA LRG+ PF+ +++ + V A + + RYW +EFLRRQ ++ ++AL+L
Sbjct: 550 KAHLRGDQLPFTRDRMQEILYSVASSAVEATSVERQTNRYWSLEFLRRQ-GDQVWQALVL 608
Query: 536 RFIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
R++++ L++ L +GD +V+V + P D I +E+
Sbjct: 609 RWLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-HLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|390439312|ref|ZP_10227718.1| putative enzyme [Microcystis sp. T1-4]
gi|389837295|emb|CCI31842.1| putative enzyme [Microcystis sp. T1-4]
Length = 671
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 244/413 (59%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVCPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIYP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E++IL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVRILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS- 416
+ + E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 D--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 550
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V + A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 551 AHLRGDQLPFTRDRMQEILYSVASSAQEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 609
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V A P D I +E+
Sbjct: 610 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRADPHRDEIRFREL 662
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ ++V G +++
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIVKGGPS-NYR 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|440755588|ref|ZP_20934790.1| RNB domain protein [Microcystis aeruginosa TAIHU98]
gi|440175794|gb|ELP55163.1| RNB domain protein [Microcystis aeruginosa TAIHU98]
Length = 671
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 242/413 (58%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 A--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 550
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 551 AHLRGDKLPFTRDRMQEILYSVASSALEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 609
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V + P D I +E+
Sbjct: 610 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ +HK
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NHK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|443668240|ref|ZP_21134141.1| RNB domain protein [Microcystis aeruginosa DIANCHI905]
gi|443330838|gb|ELS45527.1| RNB domain protein [Microcystis aeruginosa DIANCHI905]
Length = 661
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 165/413 (39%), Positives = 242/413 (58%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 247 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVLPDDEL 306
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 307 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 366
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 367 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 426
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 427 A--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 481
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 482 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 540
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 541 AHLRGDQLPFTRDRMQEILYSVASSALEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 599
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V + P D I +E+
Sbjct: 600 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 652
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 127 LAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNL 182
L V RP+GKK+W+V DQ G ++PQ+ +++ G ++K+I NFL++ + L
Sbjct: 7 LGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKGGPS-NYKEIGNFLREVQPYL 61
>gi|159030380|emb|CAO91275.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 671
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 165/413 (39%), Positives = 242/413 (58%), Gaps = 10/413 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 A--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+K
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLK 550
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A LRG+ PF+ +++ + V A + + RYW +EFLRRQ ++ ++AL+LR
Sbjct: 551 AHLRGDQLPFTRDRMQEILYSVASSALEATSVERQTNRYWSLEFLRRQ-GDQVWQALVLR 609
Query: 537 FIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++++ L++ L +GD +V+V + P D I +E+
Sbjct: 610 WLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ G ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKGGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|425463601|ref|ZP_18842931.1| putative enzyme [Microcystis aeruginosa PCC 9809]
gi|389831043|emb|CCI26535.1| putative enzyme [Microcystis aeruginosa PCC 9809]
Length = 671
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 166/419 (39%), Positives = 243/419 (57%), Gaps = 11/419 (2%)
Query: 173 NFLQKAED-NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
N L D ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ +
Sbjct: 251 NLLNPPADVDVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLV 310
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
P D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA
Sbjct: 311 LPDDELDLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIA 370
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
+Y + S IKPTY LTYE E+LHL+L+ E E++IL+ A R WR QG+I+ E
Sbjct: 371 DYRIHPSTIKPTYRLTYEDVDEMLHLDLQHEPEVRILNRWAKQRHAWRKSQGSINIQMPE 430
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
+ IKV + E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ
Sbjct: 431 SSIKVKA--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQP 485
Query: 412 NIDVS-AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLL 470
+ LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL
Sbjct: 486 ELPPDEELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLL 544
Query: 471 AHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQY 530
H+Q+KA LRG+ PF+ +++ + V A + + RYW +EFLRRQ ++ +
Sbjct: 545 THFQLKAHLRGDQLPFTRDRMQEILYSVASSAVEATSVERQTNRYWSLEFLRRQ-GDQVW 603
Query: 531 RALILRFIKDRTAALLLVEVGLQAAA--WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
+AL+LR++++ L++ L +GD +V+V + P D I +E+
Sbjct: 604 QALVLRWLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRSDPHRDEIRFREL 662
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V P+GKK+W+V DQ G ++PQ+ +++ +HK
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDHPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NHK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|298493171|ref|YP_003723348.1| exoribonuclease II ['Nostoc azollae' 0708]
gi|298235089|gb|ADI66225.1| Exoribonuclease II ['Nostoc azollae' 0708]
Length = 683
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 165/407 (40%), Positives = 242/407 (59%), Gaps = 9/407 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + E+DD LS L DG+ ++++H+ADPT+++ P D +A K
Sbjct: 278 NRLDLTHLKVYTIDDESTTEIDDGLSWEVLLDGQERLWVHIADPTRWLMPEDELDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG++C +++ +VL G++ +Y + S++KPT
Sbjct: 338 RGSTVYLPTGMIPMFPEVLATGPMSLVQGKICYSLSFGIVLDETGAVEDYCIHASLMKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E+ ++ A R WR QGAI E IKV +
Sbjct: 398 YRLTYEDVDEMLELGVEAEPEIAAIANWAKKRKTWRYNQGAISINMPEAMIKVKGDD--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+ + + D + + +LV+EMMIL GE A YG +N+ LP+RGQPQ + L
Sbjct: 455 --VTIDILDDSS-SRQLVAEMMILAGEVAARYGQTHNIPLPFRGQPQPELPPEEELLLLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+KA LRGE
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQLKAHLRGE 570
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PFSA QL+ + V T+ + + RY+ +E+LRR P++ +++ +D
Sbjct: 571 DLPFSAEQLKEVMMTVTTTTQEVTMVERQTNRYYALEYLRRHPEQIWQITVLMWLREDSN 630
Query: 543 AALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
AL+L+E +GLQ +G+++ VKV A P+ D+I +E++
Sbjct: 631 LALILLEDLGLQLPMAFRRTVNLGEQLLVKVSLADPQKDMIQFQEII 677
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G E +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQLTYTVNG-ETYKPS 58
Query: 170 DISNFLQKAEDNL 182
DI+ F ++ + L
Sbjct: 59 DIAQFSEQVKPYL 71
>gi|307150006|ref|YP_003885390.1| exoribonuclease II [Cyanothece sp. PCC 7822]
gi|306980234|gb|ADN12115.1| Exoribonuclease II [Cyanothece sp. PCC 7822]
Length = 676
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/361 (42%), Positives = 226/361 (62%), Gaps = 8/361 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + R DLTHLK+Y ID + E+DD LS L +G+I+++IH+ADP++ + PG D
Sbjct: 263 DPDVKRLDLTHLKIYTIDDESTQEIDDGLSVEFLDEGKIRLWIHIADPSRLVTPGDELDL 322
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A +R TS++LPT MFP +LA MSL QG+VC A++ +V+L+ DGS+ +YS+ S+
Sbjct: 323 EARRRSTSLYLPTGMISMFPPELATGPMSLVQGQVCPALSFAVILNDDGSVLDYSIHASL 382
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
+KPTY LTYE E+L L+++ E E+ IL +A R++WR QG+I+ + E+ IKV
Sbjct: 383 VKPTYRLTYEDVDEMLQLDIKAEPEIGILGSSAIRRVEWRKSQGSINISMPESVIKVK-- 440
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
E+ E ++ L + + +LV+EMMIL GE Y + L +P+RGQPQ +
Sbjct: 441 ENDEIVVELLYSSR---SRQLVAEMMILAGEVAGRYCQQHELPVPFRGQPQPELPPEEEL 497
Query: 420 -HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+QVKA
Sbjct: 498 IVLPAGPVRSCALRRCMPRSELT-TTPSRHASLGLDVYTQVTSPIRRYTDLLTHFQVKAH 556
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
LRG+ PFS Q++ + V T A + + RYW +EFLRR ++ + A++LR++
Sbjct: 557 LRGDPLPFSIEQMQEIIYSVATSTSEATSVERQTNRYWGLEFLRRN-GDQAWHAILLRWL 615
Query: 539 K 539
+
Sbjct: 616 R 616
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 105 LENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVE 164
+E L KG L+EF+ +R LAV RPDGKK+W+V DQ G + I+PQ+V F V G
Sbjct: 1 MEKGTLSKGKLVEFRLQGER-RLAVVDRPDGKKDWIVIDQGGQAHKIRPQRVEFEVTG-G 58
Query: 165 KFDHKDISNFLQKAE 179
+ DI+NFLQ+ +
Sbjct: 59 PYQPSDIANFLQQVQ 73
>gi|218438216|ref|YP_002376545.1| exoribonuclease II [Cyanothece sp. PCC 7424]
gi|218170944|gb|ACK69677.1| Exoribonuclease II [Cyanothece sp. PCC 7424]
Length = 676
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/356 (43%), Positives = 222/356 (62%), Gaps = 8/356 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK+Y ID + E+DD LS +L++G +++IH+ADP++ + PG D +A KR
Sbjct: 268 RLDLTHLKIYTIDDESTKEIDDGLSVEQLENGTTRLWIHIADPSRLVSPGDELDLEARKR 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TS++LPT MFP +LA MSL QG++C A++ V+L DGS+ +Y + S++KPTY
Sbjct: 328 STSLYLPTGMISMFPPELATGPMSLVQGQICPALSFGVILKEDGSVEDYIIHASLVKPTY 387
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ E+L L+++ E E+KIL+++AA RL+WR QG+I+ + E IKV E+ E
Sbjct: 388 RLTYDDVDEILQLDIKAEPEVKILADSAARRLEWRKSQGSINISMPEAVIKVK--ENDEI 445
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA-HLPE 423
II L + + +LV+EMMIL GE Y + L +P+RGQPQ + LP
Sbjct: 446 IIELL---ETSRSRQLVAEMMILAGEVAGHYCQHHELPVPFRGQPQPELPPEEELIVLPA 502
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+KA LRG+
Sbjct: 503 GPVRSCALRRCMPRSELG-TSPSRHASLGLDVYTQVTSPIRRYTDLLTHFQLKAHLRGDP 561
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK 539
PFS Q++ + V A + + RYW +EFLRR + Y A++LR+++
Sbjct: 562 LPFSGDQMQEILFSVATSASEATSVERQTNRYWGLEFLRRNGNQTWY-AILLRWLR 616
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 105 LENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVE 164
+E L KG L+EF+ DR LAV RP+GKK+W+V D+ G + I+PQ+V F V G
Sbjct: 1 MEKGTLSKGKLIEFRLQGDR-RLAVVDRPEGKKDWIVIDEGGQAHKIRPQRVEFEVSG-G 58
Query: 165 KFDHKDISNFLQKAE 179
+ H+DI NFL++ +
Sbjct: 59 PYTHQDIPNFLKQVQ 73
>gi|86609985|ref|YP_478747.1| VacB/RNB family exoribonuclease [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558527|gb|ABD03484.1| exoribonuclease, VacB/RNB family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 686
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 166/408 (40%), Positives = 242/408 (59%), Gaps = 13/408 (3%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHL Y ID ++DDALS D +K++IH+ADP+ +++ G D +A KR
Sbjct: 283 RQDLTHLHTYTIDDASTRDIDDALSVEFWSDDAVKLWIHIADPSCWVQWGDPLDLEARKR 342
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+LP PMFP +L+ MSL QGEV A++ ++L SDG I + + S IK TY
Sbjct: 343 GTSVYLPERVIPMFPPELSTGPMSLVQGEVRPALSFGILLGSDGQIRDSEICLSQIKVTY 402
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE A E+L L EA+L ++ AA R WR+ QGAI E IKV D P
Sbjct: 403 RLTYEDADEMLELG--AEAQLTAIARAAQWRYGWRMAQGAIQIGLPEQDIKVI---DEIP 457
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLPE 423
+ + +ED PA ++V+EMM+L GE A + S N + +PYR QP ++ P+
Sbjct: 458 HLRV-IEDT--PARQMVAEMMVLTGEVAARFASQNGIPVPYRLQPAPDLPPPEVLDRYPQ 514
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
GPVRS AI++ + A + +P RH LGL Y Q TSPIRRY+DL+AHYQ+KA LRG+
Sbjct: 515 GPVRSFAIMRCLSRAEV-ATQPGRHTGLGLDAYCQVTSPIRRYLDLVAHYQIKAFLRGDP 573
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTA 543
P + ++ + + T A ++ S RYW IE+LR +P + +RAL+L +++++
Sbjct: 574 LPLTEADVQQLLLGIEPGTAEANQVERKSKRYWSIEYLRLRPGQ-TWRALVLGYLREQEN 632
Query: 544 ALL--LVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 589
+L L E+ + + +G +E++V +A PR D+I L+EV R
Sbjct: 633 LVLAMLDEIAFRVPVRLERQIPLGAWIELEVVQADPRADVIELREVGR 680
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ ++DRVL AV Q +GKKN ++ +G S+ P+Q+TF + G F
Sbjct: 1 MEKGTLVEFRYNNDRVL-AVVQGTEGKKNLLLGVPSGQVHSVHPRQITFALNGGSSFTAS 59
Query: 170 DISNFLQKAEDNL 182
DI F Q + L
Sbjct: 60 DIPGFWQAVQAKL 72
>gi|220906337|ref|YP_002481648.1| exoribonuclease II [Cyanothece sp. PCC 7425]
gi|219862948|gb|ACL43287.1| Exoribonuclease II [Cyanothece sp. PCC 7425]
Length = 671
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/407 (38%), Positives = 238/407 (58%), Gaps = 11/407 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R +LT LKVY ID + E+DD LS L +G+ +++IH+ADP++++ PG D +A +
Sbjct: 265 HRVNLTGLKVYTIDDESTREIDDGLSLEFLPEGQQRLWIHIADPSRWLTPGDELDLEARR 324
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP +LA MSL QG+VC A++ + L G++ +Y + S IKPT
Sbjct: 325 RSTTIYLPTGMIPMFPPELATGPMSLTQGQVCCALSFGITLDKTGAVVDYQLAPSQIKPT 384
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E EL ++ A R WR QGAI E IKV E
Sbjct: 385 YRLTYEDVDEMLELGIDAEPELLAIAHWAKQRRDWRAAQGAIMINMPEASIKVIGEEVQI 444
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
++ Q PA LV+EMMIL GE A + + L +P+R QPQ + L
Sbjct: 445 DVL------QDSPARSLVAEMMILTGEVAARFAQEHELPIPFRFQPQPELPSEEELLQLD 498
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR AI + M + + P RH LGL Y Q TSPIRRY DL+AH+Q+KA LRGE
Sbjct: 499 PGPVRDCAIRRCMPRSEVG-TVPARHASLGLDLYSQVTSPIRRYTDLIAHWQIKAHLRGE 557
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PF L+ + + V + A + + RYW +E+LR QP++ ++A++LR++++
Sbjct: 558 PLPFDQENLKLLLTSVVSVAQEATLVERQTNRYWCLEYLRTQPQQI-WQAVMLRWLREHE 616
Query: 543 --AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
A +L E+G++ A + ++G+++ ++V A P+ D I ++EV
Sbjct: 617 NLALVLFEELGVELAMRFNRAVKVGEQLMLRVRYADPQADQIQIEEV 663
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ R LAVA+RP+GKK+W+V DQ+ S ++ P+++T+ V G + + +
Sbjct: 1 MEKGTLVEFRLQGQR-RLAVAERPEGKKHWIVVDQHQQSHTLHPREITYEVSG-QNYRPQ 58
Query: 170 DISNFLQ 176
DI++F Q
Sbjct: 59 DIASFCQ 65
>gi|427711712|ref|YP_007060336.1| exoribonuclease R [Synechococcus sp. PCC 6312]
gi|427375841|gb|AFY59793.1| exoribonuclease R [Synechococcus sp. PCC 6312]
Length = 670
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 166/412 (40%), Positives = 242/412 (58%), Gaps = 21/412 (5%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHLKVY ID + E+DD +S L +G+ +++IH+ADP++++ G +++A +R
Sbjct: 268 RQDLTHLKVYTIDDESTQEIDDGISLETLPNGQERLWIHIADPSRWLLLGDGLEQEARRR 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
T+V+LPT PMFP +LA MSL G+ C A++ ++L DGSIA+Y + S+IKPTY
Sbjct: 328 ATTVYLPTGMIPMFPPELATGPMSLVAGKTCCALSFGIILQPDGSIADYQICPSLIKPTY 387
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-DPE 363
LTYE +L L ++ E EL + RL WR QQGAI E IKV + E D
Sbjct: 388 RLTYEDVDMMLELAVQNEPELLGIGAWMQKRLAWRQQQGAIQINMPEPEIKVVDDEVDIH 447
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
P+ + A +LV+EMMIL GE A +G N+ LP+R Q Q + LP
Sbjct: 448 PLADSV-------ARQLVAEMMILTGEVAARFGEAQNIPLPFRSQTQPELPPEEELQQLP 500
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR AI + M + + P RH LGL Y Q TSPIRRY DL+AH Q+KA LRG+
Sbjct: 501 PGPVRQCAIRRCMPKSEMS-PTPNRHASLGLNAYCQVTSPIRRYSDLIAHMQIKAHLRGD 559
Query: 483 SPPFSAGQLE----GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
+ PF+A L G+ + V + R+ + RYW +EFLRR ++ ++AL+LR++
Sbjct: 560 NVPFAAPDLGELLLGVVAAVQETILVERQ----TTRYWCLEFLRRH-SDQVWQALMLRWL 614
Query: 539 K--DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+ D A +LL ++G++ A +G+ + ++V PR D I L+EV+
Sbjct: 615 REDDLLALVLLEDLGVELAVRFHRVVGLGETLNLRVSRVDPRADQIALEEVI 666
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ ++ R L V +RP+GKK+W+V D N + ++ P+Q+T+ V G E++ +
Sbjct: 1 MEKGTLVEFRVNNQR-RLGVVERPEGKKHWIVIDSNHQAHTLHPRQITYTVTG-ERYQTQ 58
Query: 170 DISNFLQKAEDNLLNRKDL 188
+I F QKA + L+ + L
Sbjct: 59 EIPQF-QKAVEPFLDPESL 76
>gi|218246504|ref|YP_002371875.1| exoribonuclease II [Cyanothece sp. PCC 8801]
gi|218166982|gb|ACK65719.1| Exoribonuclease II [Cyanothece sp. PCC 8801]
Length = 671
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 166/409 (40%), Positives = 244/409 (59%), Gaps = 10/409 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + +E+DD LS L D ++K++IH+ADPT+ + PG D +A +
Sbjct: 262 DRLDLTHLKVYTIDDESTEEIDDGLSVEFLSDDQVKLWIHIADPTRLVSPGDELDLEARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT MFP +LA MSL QG++C +++ +V L ++G++ +YS+ S+IKPT
Sbjct: 322 RTTTLYLPTGMISMFPVELATGPMSLIQGKICPSLSFAVTLDNEGAVLDYSIHASLIKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY E+L ++ E E++IL+EAA R WR QGAI+ E IKV + ED E
Sbjct: 382 YRLTYYDVDEMLQWGIKNEPEIRILAEAAKKRHLWRQSQGAINIKMPEAVIKVKS-ED-E 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ-SNIDVSAFAHLP 422
+I L ++ + +LV+EMMIL GE Y + L +P+RGQPQ LP
Sbjct: 440 IVIELI---ESSRSRQLVAEMMILAGEVAGRYCQEHGLPVPFRGQPQPELPPDEELLLLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR+ A+ + M + I P RH LGL Y Q TSPIRRY DLL H+Q+KA LRG+
Sbjct: 497 PGPVRACALRRCMPRSEIG-TIPNRHASLGLNTYTQVTSPIRRYTDLLTHFQLKAHLRGD 555
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
PFS ++ + V + + A + + RYW +EFLRR E + ++LR+++ +
Sbjct: 556 KLPFSLDMMQQILYGVTLSAQEASLVERQTNRYWGLEFLRRNADE-IWHGIVLRWLREDE 614
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 589
LLL E+GL+ +GD + V+V A P D I +E+++
Sbjct: 615 NLGILLLEELGLELPHRFEKAVSLGDRLNVQVSCADPHRDEIRFREMLQ 663
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+E + +R LAV RP+GKK+WMV D G S I+PQ+V + V G + +
Sbjct: 1 MEKGKLIEIRVQGER-RLAVVDRPEGKKDWMVIDAGGQSHKIRPQRVEYEVEG-GPYSPQ 58
Query: 170 DISNFLQKAEDNL 182
+I FL+ E L
Sbjct: 59 EIPQFLRDVEPYL 71
>gi|158337924|ref|YP_001519100.1| exoribonuclease II [Acaryochloris marina MBIC11017]
gi|158308165|gb|ABW29782.1| exoribonuclease II [Acaryochloris marina MBIC11017]
Length = 680
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 11/406 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT LKVY ID + E+DD LS L DG+ +V++H+ADP+++I G D++A +
Sbjct: 271 ERHDLTSLKVYTIDDESTSEIDDGLSLEFLPDGKQRVWVHIADPSRWITLGDELDQEAQR 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+LPT PMFP +L+ MSL QG++C A++ V+L ++G+I Y + S ++PT
Sbjct: 331 RGTTVYLPTGMIPMFPTELSTGPMSLVQGQICCALSFGVILTAEGAIESYEIRCSQVQPT 390
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY E+L L +E E+EL L++ A R WR QGAI E+ IKV E
Sbjct: 391 YRLTYADVDEMLELGVEAESELLALAQWAKQRQAWRKSQGAISIQMPESSIKVEG----E 446
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-GQPQSNIDVSAFAHLP 422
+ + D + A LV+EMMIL GE A YG N+L LP+R L
Sbjct: 447 KVDIQVLYDSS--ARNLVAEMMILTGEVAARYGQDNDLPLPFRHQPQPELPPEEELLQLA 504
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR AI M + + P RH LGL Y Q TSPIRRY DL+AH+Q+KA LR E
Sbjct: 505 PGFVRYCAIRSCMPRSEVSI-SPARHASLGLDCYCQVTSPIRRYADLVAHFQIKAHLRDE 563
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PFS L + V A L + RYW +E+L RQ + + A++LR++++
Sbjct: 564 ELPFSKTDLTTLIPSVTTAAYEATLLERQTNRYWSLEYL-RQHGQTVWPAMVLRWLREHE 622
Query: 543 --AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586
A +LL ++GL+ + +GD ++VKV +PR D I L+E
Sbjct: 623 NLALILLEDLGLELVMRLDHPVVLGDRLDVKVASVNPRLDRIQLQE 668
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 110 LQKGLLLEFKKDSD------RVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGV 163
++KG L+EFK+ D L V RP+GKKNW+V DQ G + ++ P+Q TFVV G
Sbjct: 1 MEKGTLIEFKRRGDCAEGQRPFQLGVLDRPEGKKNWVVVDQTGQTHTLHPRQFTFVVSG- 59
Query: 164 EKFDHKDISNFLQKAE 179
+ + +I+ F +AE
Sbjct: 60 KTYTPSEIAEFQSEAE 75
>gi|86605897|ref|YP_474660.1| VacB/RNB family exoribonuclease [Synechococcus sp. JA-3-3Ab]
gi|86554439|gb|ABC99397.1| exoribonuclease, VacB/RNB family [Synechococcus sp. JA-3-3Ab]
Length = 683
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 241/406 (59%), Gaps = 13/406 (3%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHL Y ID ++DDALS D +K++IH+ADP+ +++ G D +A KR
Sbjct: 283 RRDLTHLHTYTIDDASTRDIDDALSVEFESDDEVKLWIHIADPSCWVQWGDPLDLEARKR 342
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+LP PMFP +L+ MSL QGEV A++ + L SDG++ +Y + S I+ Y
Sbjct: 343 GTSVYLPERVIPMFPSELSTGPMSLVQGEVRPALSFGIRLGSDGAVRDYEICLSQIRVNY 402
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ A E+L L EA+L ++ AA R WRL QGAI E IKV D P
Sbjct: 403 RLTYDDADEMLELG--AEAQLTAIARAARWRYAWRLAQGAIPIGLPEQDIKVI---DEIP 457
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL-PE 423
+ + +ED PA ++V+EMM+L GE A + N + +PYR QP + L P+
Sbjct: 458 HLRV-IED--TPARQMVAEMMVLAGEVAARFARQNGIPVPYRLQPAPELPPPEVLDLYPQ 514
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
GPVRS AI++ + A + +P RH LGL Y Q TSPIRRY+DL+AHYQ+KA LRG+
Sbjct: 515 GPVRSFAIMRCLSRAEV-ATQPGRHTGLGLDAYCQVTSPIRRYLDLVAHYQIKAFLRGDP 573
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTA 543
P + +++ + + T A ++ S RYW IE+LR++P + ++AL+L ++++
Sbjct: 574 LPLTEAKVQQLLLGIEPGTAEANQVERKSKRYWSIEYLRQRPGQ-IWQALVLGYLREEEN 632
Query: 544 AL--LLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
+ +L E+ + + +G +E++V +A PR D+I L+EV
Sbjct: 633 LVMAMLDEIAFRVPVRLERQVPLGAWIELEVLQADPRADVIELREV 678
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +++RVL AV + +GKKN ++ +G S+ P+Q+TF + G F
Sbjct: 1 MEKGTLVEFRHNNERVL-AVVEGTEGKKNLLLGVASGQVHSVHPRQITFALNGNSSFTVS 59
Query: 170 DISNFLQKAEDNL 182
DI F Q + L
Sbjct: 60 DIPGFWQAVQAKL 72
>gi|172038259|ref|YP_001804760.1| ribonuclease II [Cyanothece sp. ATCC 51142]
gi|354554390|ref|ZP_08973695.1| Exoribonuclease II [Cyanothece sp. ATCC 51472]
gi|171699713|gb|ACB52694.1| ribonuclease II [Cyanothece sp. ATCC 51142]
gi|353554069|gb|EHC23460.1| Exoribonuclease II [Cyanothece sp. ATCC 51472]
Length = 670
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/421 (39%), Positives = 244/421 (57%), Gaps = 11/421 (2%)
Query: 172 SNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
S++LQ D +R DLTHLKVY ID + +E+DD LS L D R+K++IH+ADPT+
Sbjct: 249 SSYLQTLPPDADSDRLDLTHLKVYTIDDESTEEIDDGLSVEYLDDDRVKLWIHIADPTRL 308
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+ PG D +A KR T+++LPT MFP +LA MSLRQG++C A++ V+L S G+I
Sbjct: 309 VTPGDELDLEARKRSTTLYLPTGMISMFPVELATGPMSLRQGKLCAALSFGVILDSHGAI 368
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+YS+ S+IKPTY LTY E+L L + E+EL +L+EAA R QWR QG+I
Sbjct: 369 LDYSIHASLIKPTYRLTYHDVDEMLQLGITAESELAVLAEAAKKRHQWRQSQGSITIKMP 428
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E IKV + + + + +LV+EMMIL GE Y + + +P+RGQPQ
Sbjct: 429 EAIIKVKS-----EEEIIIELLETSISRQLVAEMMILAGEVAGNYCREHGIPVPFRGQPQ 483
Query: 411 -SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDL 469
LP GPVR+ A+ + M + + P RH LGL Y Q TSPIRRY DL
Sbjct: 484 PELPSEEELLLLPPGPVRACALRRCMPRSEMG-TLPSRHASLGLDNYTQVTSPIRRYTDL 542
Query: 470 LAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQ 529
L H+Q+KA LRG+ PF ++ + V + + A + + RYW +EFLRR ++
Sbjct: 543 LTHFQLKAHLRGDKLPFPLDVMQQILYSVTLSAQEASLVERQTNRYWGLEFLRRN-ADQV 601
Query: 530 YRALILRFIKDRT--AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++ L+LR++++ +LL E+GL+ +GD + V+V A P D I +E+
Sbjct: 602 WQGLVLRWLREDEGLGVILLEELGLELPHRFERSVSLGDRLNVQVSRADPHRDEIRFREM 661
Query: 588 V 588
+
Sbjct: 662 L 662
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ + + L V RP+GKK+W+V D G S ++PQ+V + VPG + +
Sbjct: 1 MEKGKLVEFRVNGE-PRLGVVDRPEGKKDWIVIDSEGHSHKLRPQRVDYEVPG-GSYSNS 58
Query: 170 DISNFLQK 177
DI FL++
Sbjct: 59 DIPQFLKE 66
>gi|257059537|ref|YP_003137425.1| exoribonuclease II [Cyanothece sp. PCC 8802]
gi|256589703|gb|ACV00590.1| Exoribonuclease II [Cyanothece sp. PCC 8802]
Length = 671
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 165/409 (40%), Positives = 241/409 (58%), Gaps = 10/409 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + +E+DD LS L D ++K++IH+ADPT+ + PG D +A +
Sbjct: 262 DRLDLTHLKVYTIDDESTEEIDDGLSVEFLSDDQVKLWIHIADPTRLVSPGDELDLEARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT MFP +LA MSL QG++C +++ +V L G++ +YS+ S+IKPT
Sbjct: 322 RTTTLYLPTGMISMFPVELATGPMSLIQGKICPSLSFAVTLDDQGAVLDYSIHASLIKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY E+L ++ E E++IL+E A R WR QGAI+ E IKV + ED E
Sbjct: 382 YRLTYYDVDEMLQWGIKNEPEIRILAETAKKRHLWRQSQGAINIKMPEAVIKVKS-ED-E 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ-SNIDVSAFAHLP 422
+I L ++ + +LV+EMMIL GE Y + L +P+RGQPQ LP
Sbjct: 440 IVIELI---ESSRSRQLVAEMMILAGEVAGRYCQEHGLPVPFRGQPQPELPPDEELLLLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR+ A+ + M + I P RH LGL Y Q TSPIRRY DLL H+Q+KA LRG+
Sbjct: 497 PGPVRACALRRCMPRSEIG-TIPNRHASLGLNTYTQVTSPIRRYTDLLTHFQLKAHLRGD 555
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
PFS ++ + V + + A + + RYW +EFLRR E + ++LR+++ +
Sbjct: 556 KLPFSLDMMQQILYGVTLSAQEASLVERQTNRYWGLEFLRRNADE-IWHGIVLRWLREDE 614
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 589
LLL E+GL+ +GD + V+V A P D I +E+++
Sbjct: 615 NLGILLLEELGLELPHRFEKAVSLGDRLNVQVSCADPHRDEIRFREMLQ 663
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+E + +R LAV RP+GKK+WMV D G S I+PQ+V + V G + +
Sbjct: 1 MEKGKLIEIRVQGER-RLAVVDRPEGKKDWMVIDAGGQSHKIRPQRVEYEVEG-GPYSPQ 58
Query: 170 DISNFLQKAEDNL 182
+I FL+ E L
Sbjct: 59 EIPQFLRDVEPYL 71
>gi|359463693|ref|ZP_09252256.1| ribonuclease II [Acaryochloris sp. CCMEE 5410]
Length = 680
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 162/406 (39%), Positives = 228/406 (56%), Gaps = 11/406 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT LKVY ID + E+DD LS L G+ +V++H+ADP+++I G D++A +
Sbjct: 271 ERHDLTSLKVYTIDDESTSEIDDGLSLEFLPGGKQRVWVHIADPSRWITLGDELDQEAQR 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+LPT PMFP +L+ MSL QG++C A++ V+L ++G+I Y + S ++PT
Sbjct: 331 RGTTVYLPTGMIPMFPTELSTGPMSLVQGQICCALSFGVILTAEGAIESYEIRCSQVQPT 390
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY E+L L +E E+EL L+ A R WR QGAI E+ IKV E
Sbjct: 391 YRLTYADVDEMLELGVEAESELLALAHWAKQRQAWRKSQGAISIQMPESSIKVEG----E 446
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-GQPQSNIDVSAFAHLP 422
+ + D + A LV+EMMIL GE A YG N+L LP+R L
Sbjct: 447 KVDIQVLYDSS--ARNLVAEMMILTGEVAARYGQDNDLPLPFRHQPQPELPPEEELLQLA 504
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR AI M + + P RH LGL Y Q TSPIRRY DL+AH+Q+KA LR E
Sbjct: 505 PGFVRYCAIRSCMPRSEVSI-SPARHASLGLDCYCQVTSPIRRYADLVAHFQIKAHLRDE 563
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PFS L + V A L + RYW +E+L RQ + + A++LR++++
Sbjct: 564 ELPFSKTDLTTLIPSVTTAAYEATLLERQTNRYWSLEYL-RQHGQTVWPAMVLRWLREHE 622
Query: 543 --AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586
A +LL ++GL+ + +GD ++VKV +PR D I L+E
Sbjct: 623 NLALILLEDLGLELVMRLDHPVVLGDRLDVKVASVNPRLDRIQLQE 668
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 110 LQKGLLLEFKKDSD------RVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGV 163
++KG L+EFK+ D L V RP+GKKNW+V DQ G + ++ P+Q TFVV G
Sbjct: 1 MEKGTLIEFKRRGDCAEGQRPFQLGVLDRPEGKKNWVVVDQTGQTHTLHPRQFTFVVSG- 59
Query: 164 EKFDHKDISNFLQKAE 179
+ + +I+ F +AE
Sbjct: 60 KTYTPSEIAEFQLEAE 75
>gi|22298194|ref|NP_681441.1| ribonuclease II [Thermosynechococcus elongatus BP-1]
gi|22294373|dbj|BAC08203.1| ribonuclease II [Thermosynechococcus elongatus BP-1]
Length = 674
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 160/411 (38%), Positives = 237/411 (57%), Gaps = 22/411 (5%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHLKVY ID + E+DD LS + D R K++IH+ADPT+++ L D++A +R
Sbjct: 266 RRDLTHLKVYTIDDESTQEIDDGLSLEVIGD-RQKLWIHIADPTRWVMVDDLLDQEARRR 324
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
T+V+LPT PMFP +LA MSL G+ C A++ ++L G + EY + S I+PTY
Sbjct: 325 ATTVYLPTGMIPMFPTELATGPMSLVAGQTCCALSFGILLADSGEVLEYEICPSWIRPTY 384
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-DPE 363
L+Y+ +L + EA+L +++ R +WR Q+GAI E IKVA E +
Sbjct: 385 RLSYDDVDMILEQGVTGEADLLAIAQWGQRRSEWRRQRGAIRINIPEPNIKVAGEEVEIS 444
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAHLP 422
P+ + PA +LV+EMMIL GE A +G+ + LP+R Q P LP
Sbjct: 445 PLHD-------SPARQLVAEMMILAGEVAAHFGAREGIPLPFRCQSPPELPSEEELLQLP 497
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
G VR AI + M + + +P H LGL Y Q TSPIRRY DLLAH Q+KA LRGE
Sbjct: 498 AGIVRDCAIRRCMPRSEMST-QPNPHASLGLDAYCQVTSPIRRYTDLLAHRQIKAHLRGE 556
Query: 483 SPPFSAGQLE----GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
+PP + QL G+ S + + + R+ + RYW +E+LRR +E +R ++LR++
Sbjct: 557 TPPLTPEQLNEILLGLVSSLQESSLVERQTN----RYWCLEYLRRH-REEVWRGILLRWL 611
Query: 539 K--DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
+ + +LL ++ ++ A A++G+ V V+V PR D I+L+EV
Sbjct: 612 RPEEGLGLVLLEDLAVELAMRFQRQAKLGECVLVRVSRVDPRSDQIWLEEV 662
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ ++ R LAV RP+GKK+W+ D++ + +I P+Q+TF VP E+F +
Sbjct: 1 MEKGTLIEFRVNNQR-RLAVIDRPEGKKHWIAIDEHLQTHTIHPRQLTFTVPE-ERFRPQ 58
Query: 170 DISNFLQKAE 179
+I+ F Q+ +
Sbjct: 59 EIATFWQQVQ 68
>gi|443328119|ref|ZP_21056722.1| exoribonuclease R [Xenococcus sp. PCC 7305]
gi|442792316|gb|ELS01800.1| exoribonuclease R [Xenococcus sp. PCC 7305]
Length = 669
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 238/409 (58%), Gaps = 11/409 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI-KVYIHVADPTKYIEPGSLSDKDAM 242
+R DLTHLKVY ID + E+DD LS + + + +++IH+ADPT+ + PG D +A
Sbjct: 262 DRLDLTHLKVYTIDDESTTEIDDGLSVEYIGEAKTPRLWIHIADPTRLLTPGDELDLEAR 321
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+R TS++LPT PMFP +LA MSL QG+ C A++ V L G+IAEY++ + IKP
Sbjct: 322 RRSTSLYLPTGMVPMFPSELATGPMSLVQGQDCCALSFGVTLDETGAIAEYTIHPTKIKP 381
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTYE E+L L L EAEL L+ AA R WR QG+I E IKV E+
Sbjct: 382 TYRLTYEDVDEMLQLGLTNEAELAELAAAAKARQAWRKSQGSIQIKMPEASIKVK--ENE 439
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
E I+L +E+ A + LV+EMMIL GE YG + L LP+RGQPQ + L
Sbjct: 440 EITIDL-LEESA--SRHLVAEMMILAGEITGRYGKEHGLPLPFRGQPQPELPPEEELMLL 496
Query: 423 E-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
GPVR A+ + M + + P+RH LGL YVQ TSPIRRY DLL H+Q+KA L+G
Sbjct: 497 PAGPVRYCALRRCMPRSEMSI-NPLRHASLGLDTYVQVTSPIRRYTDLLTHFQLKAHLKG 555
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
PF+ +L+ + V + A + + RYW +E+LRR ++ ++ L+LR++++
Sbjct: 556 VDLPFAKDELQEIIYSVGSSSYEATLVERQTNRYWGLEYLRRN-SDQIWQVLVLRWLRED 614
Query: 542 T--AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
A+L+ ++GL+ +GD + KV + P D I +E V
Sbjct: 615 EGLGAILIEDLGLELTHRFDNHVNLGDRLGFKVLVSDPHRDEIRFQEAV 663
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAVA+RP+GKK+W+V D G S I+PQ+V + V G +
Sbjct: 1 MEKGTLIEFRLQGER-RLAVAERPEGKKDWIVVDSQGQSHKIRPQRVEYTVGG-GPYQSS 58
Query: 170 DISNFLQKAE 179
DI +F++ +
Sbjct: 59 DIPSFVETCQ 68
>gi|407957682|dbj|BAM50922.1| ribonuclease II [Bacillus subtilis BEST7613]
Length = 650
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 162/408 (39%), Positives = 234/408 (57%), Gaps = 10/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT LK Y ID + E+DD LS L DG +++IHVADPT+ + P D +A K
Sbjct: 246 ERFDLTTLKTYTIDDESTSEIDDGLSVETLADGGHRLWIHVADPTRLLSPNDELDLEARK 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP +LA MSL QG+ C A++ V L G++ ++++ S +KPT
Sbjct: 306 RSTSLYLPTGMISMFPPELATGPMSLLQGQRCVALSFGVTLDEVGAVRDFTIAPSWVKPT 365
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E EL +L+EAA R QWR QGAI E IKV E+
Sbjct: 366 YRLTYEDVDEMLVLKIQGEPELPLLAEAAKKRAQWRKSQGAITIKMPEAIIKVNADEE-- 423
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
+ +Y+++ + + +LV+EMMIL GE + + + +P+RGQPQ + LP
Sbjct: 424 --VQIYLQETSV-SRQLVAEMMILAGEVAGRFCQEHGIPVPFRGQPQPELPSDEELLSLP 480
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR A+ + M + + P RH LGL Y Q TSPIRRY DL+ H+Q+KA LRGE
Sbjct: 481 PGPVRECAVRRCMPRSEVGI-TPSRHASLGLDLYSQATSPIRRYTDLITHFQMKAYLRGE 539
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
PFS Q++ + V ++ A + + RYW +EFLRR E ++ ++LR+++ D
Sbjct: 540 PLPFSGEQVQEILYSVMPSSKEATLVERQTNRYWSLEFLRRNINE-VWQGVMLRWLREDD 598
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+LL E+GL+ GD + +KV A P D I +E++
Sbjct: 599 GLGLILLEELGLELPHRFDRPISPGDRLSLKVSNADPHRDEIRFRELL 646
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 127 LAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRK 186
+AV RPDGKK+W+V DQ G S +KPQ+V + +PG + D+ +FL + + L
Sbjct: 1 MAVVDRPDGKKDWVVIDQQGQSHKLKPQRVEYEIPG-GPYTVDDLPSFLGEVDQYL---- 55
Query: 187 DLTHLKV-YAIDVDEADELDDALSAMRL 213
D + L+V + + ++E + + A A+ L
Sbjct: 56 DPSSLEVAWELLIEEGESITPADLALLL 83
>gi|16329795|ref|NP_440523.1| ribonuclease II [Synechocystis sp. PCC 6803]
gi|383321537|ref|YP_005382390.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383324707|ref|YP_005385560.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490591|ref|YP_005408267.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384435857|ref|YP_005650581.1| ribonuclease II [Synechocystis sp. PCC 6803]
gi|451813955|ref|YP_007450407.1| ribonuclease II [Synechocystis sp. PCC 6803]
gi|7674330|sp|P73177.1|RN2H_SYNY3 RecName: Full=Uncharacterized ribonuclease sll1290
gi|1652280|dbj|BAA17203.1| ribonuclease II [Synechocystis sp. PCC 6803]
gi|339272889|dbj|BAK49376.1| ribonuclease II [Synechocystis sp. PCC 6803]
gi|359270856|dbj|BAL28375.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274027|dbj|BAL31545.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277197|dbj|BAL34714.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|451779924|gb|AGF50893.1| ribonuclease II [Synechocystis sp. PCC 6803]
Length = 666
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 162/408 (39%), Positives = 234/408 (57%), Gaps = 10/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT LK Y ID + E+DD LS L DG +++IHVADPT+ + P D +A K
Sbjct: 262 ERFDLTTLKTYTIDDESTSEIDDGLSVETLADGGHRLWIHVADPTRLLSPNDELDLEARK 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP +LA MSL QG+ C A++ V L G++ ++++ S +KPT
Sbjct: 322 RSTSLYLPTGMISMFPPELATGPMSLLQGQRCVALSFGVTLDEVGAVRDFTIAPSWVKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E EL +L+EAA R QWR QGAI E IKV E+
Sbjct: 382 YRLTYEDVDEMLVLKIQGEPELPLLAEAAKKRAQWRKSQGAITIKMPEAIIKVNADEE-- 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
+ +Y+++ + + +LV+EMMIL GE + + + +P+RGQPQ + LP
Sbjct: 440 --VQIYLQETSV-SRQLVAEMMILAGEVAGRFCQEHGIPVPFRGQPQPELPSDEELLSLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR A+ + M + + P RH LGL Y Q TSPIRRY DL+ H+Q+KA LRGE
Sbjct: 497 PGPVRECAVRRCMPRSEVGI-TPSRHASLGLDLYSQATSPIRRYTDLITHFQMKAYLRGE 555
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
PFS Q++ + V ++ A + + RYW +EFLRR E ++ ++LR+++ D
Sbjct: 556 PLPFSGEQVQEILYSVMPSSKEATLVERQTNRYWSLEFLRRNINE-VWQGVMLRWLREDD 614
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+LL E+GL+ GD + +KV A P D I +E++
Sbjct: 615 GLGLILLEELGLELPHRFDRPISPGDRLSLKVSNADPHRDEIRFRELL 662
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAV RPDGKK+W+V DQ G S +KPQ+V + +PG +
Sbjct: 1 MEKGQLIEFRHQGER-RLAVVDRPDGKKDWVVIDQQGQSHKLKPQRVEYEIPG-GPYTVD 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
D+ +FL + + L D + L+V + + ++E + + A A+ L
Sbjct: 59 DLPSFLGEVDQYL----DPSSLEVAWELLIEEGESITPADLALLL 99
>gi|428204483|ref|YP_007083072.1| exoribonuclease R [Pleurocapsa sp. PCC 7327]
gi|427981915|gb|AFY79515.1| exoribonuclease R [Pleurocapsa sp. PCC 7327]
Length = 666
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 244/408 (59%), Gaps = 10/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + +E+DD LS L+ G+++++IH+ADP++ + PG D +A +
Sbjct: 262 NRLDLTHLKVYTIDDESTEEIDDGLSVEFLKHGKVRLWIHIADPSRLVTPGDELDLEARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP LA + MSL QG++C A++ VVL G++ +YS+ S+IKPT
Sbjct: 322 RSTSLYLPTGMISMFPTVLATDPMSLVQGKLCPALSFGVVLDETGTVEDYSIYTSLIKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E E+ L+ A R QWR QG+ID E+ IKV D E
Sbjct: 382 YRLTYEDVDEMLELGIQAEPEIAALATWAQRRQQWRRSQGSIDIQMPESVIKVKA--DDE 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+I L + A +LV+EMMIL GE Y +NL +P+RGQPQ + L
Sbjct: 440 IVIELL---EVSRARQLVAEMMILAGEVAGRYCQEHNLPVPFRGQPQPELPPEEELLLLP 496
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR+ A+ + M + I P+RH LGL Y Q TSPIRRY DLLAH+Q+KA LRG+
Sbjct: 497 AGPVRACALRRCMPRSEIGI-TPIRHASLGLDTYTQVTSPIRRYTDLLAHFQLKAHLRGD 555
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR- 541
S PFS Q++ + V + A + + RYW +E+LRR + ++ L+LR++++
Sbjct: 556 SLPFSREQMQEILYSVTSSAQEATAVERQTNRYWGLEYLRRH-ADCVWQVLVLRWLREEE 614
Query: 542 -TAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+LL E+GL+ +GD ++V+V A P D I +E +
Sbjct: 615 NLGIILLEELGLELPHRFERPVSLGDRLKVQVYRADPHRDEIRFREAI 662
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF++ +R LAV RP+GKK+W+V D+ G + I+PQQV + + G +
Sbjct: 1 MEKGKLIEFRRQGER-RLAVTDRPEGKKDWIVLDEGGVAHKIRPQQVEYEIDG-GSYKPS 58
Query: 170 DISNFLQKAEDNL 182
DI +F+Q+ + L
Sbjct: 59 DIPSFIQQVKPYL 71
>gi|67924092|ref|ZP_00517539.1| Exoribonuclease II [Crocosphaera watsonii WH 8501]
gi|416401710|ref|ZP_11687276.1| ribonuclease II [Crocosphaera watsonii WH 0003]
gi|67854053|gb|EAM49365.1| Exoribonuclease II [Crocosphaera watsonii WH 8501]
gi|357262011|gb|EHJ11211.1| ribonuclease II [Crocosphaera watsonii WH 0003]
Length = 670
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 166/408 (40%), Positives = 242/408 (59%), Gaps = 10/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT LKVY ID + +E+DD LS L++ ++K++IH+ADPT+ + PG D +A K
Sbjct: 262 DRLDLTRLKVYTIDDESTEEIDDGLSVEYLENDQVKLWIHIADPTRLVTPGDELDLEARK 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT MFP +LA MSL QG++C A++ V+L S+G++ +YS+ S+IKPT
Sbjct: 322 RSTTLYLPTGMISMFPLELAAGPMSLCQGQLCAALSFGVILDSEGAVVDYSIHASLIKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY E+L L + EAEL +L+EAA R QWR QG+I E IKV + D E
Sbjct: 382 YRLTYHDVDEMLQLGITAEAELAVLAEAAKKRHQWRQSQGSITIKMPEAIIKVKS--DEE 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ-SNIDVSAFAHLP 422
I L + + +LV+EMMIL GE TY + + +P+RGQPQ LP
Sbjct: 440 ISIELL---ETSISRQLVAEMMILAGEVAGTYCGEHGIPVPFRGQPQPELPPEEELLLLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR+ A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+KA LRG+
Sbjct: 497 PGPVRACALRRCMPRSEMG-TLPSRHASLGLDSYTQVTSPIRRYTDLLTHFQIKAHLRGD 555
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
PF+ ++ + V + + A L + RYW +EFLRR E ++ L+LR++++
Sbjct: 556 ELPFALDVMQQILYSVTLSAQEASFLERQTNRYWGLEFLRRNADE-VWQGLVLRWLREDE 614
Query: 543 --AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+LL E+GL+ +GD + V+V + P D I +E++
Sbjct: 615 GLGVILLEELGLELPHRFERSVSLGDRLNVQVSRSDPHRDEIRFREML 662
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ + + LAV RP+GKK+WMV D G S ++PQ+V + VPG ++
Sbjct: 1 MEKGKLIEFRLNGE-YRLAVVDRPEGKKDWMVIDGQGNSHKLRPQRVDYEVPG-GPYNSD 58
Query: 170 DISNFLQKAEDNL 182
+IS FLQ+ + L
Sbjct: 59 EISQFLQEIQPYL 71
>gi|428769100|ref|YP_007160890.1| exoribonuclease II [Cyanobacterium aponinum PCC 10605]
gi|428683379|gb|AFZ52846.1| Exoribonuclease II [Cyanobacterium aponinum PCC 10605]
Length = 668
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 160/439 (36%), Positives = 243/439 (55%), Gaps = 16/439 (3%)
Query: 153 PQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMR 212
PQQV V + D + F+ K L DLTH K+Y ID + E+DD +S
Sbjct: 241 PQQVYEVAHSI--LDRISTNEFIDKDSQRL----DLTHHKIYTIDDESTTEIDDGISLEF 294
Query: 213 LQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQG 272
L +G +++IH+ADPT+ I P D +A +R TS++LPT PMFP +LA MSL QG
Sbjct: 295 LDNGLARLWIHIADPTRLINPDDPLDLEARRRSTSLYLPTGMVPMFPSELATGPMSLVQG 354
Query: 273 EVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAA 332
++C A++ VVL +G++ +Y + ++++KPTY LTY E+L LN++ E E+ +++ A
Sbjct: 355 QICPALSFGVVLDEEGAVKDYEIHSTLVKPTYRLTYHDVDEMLTLNIQGEEEIIRIAQEA 414
Query: 333 ALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAI 392
R QWR G++ + E IKV N E E I L + + +V+EMMIL GE
Sbjct: 415 KKREQWRKNNGSVMISMPEAIIKVKNEE--EVSIELL---EMSRSRLVVAEMMILAGEVA 469
Query: 393 ATYGSFNNLALPYRG-QPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVL 451
Y +N+ +P+RG LP GPVRS A+ + M + P RH L
Sbjct: 470 GKYCQEHNIPVPFRGQPQPELPPEEELILLPPGPVRSCALRRCMPKSETGL-TPSRHASL 528
Query: 452 GLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNT 511
GL Y Q TSPIRRY DLL+H+Q+KA LRGE PF Q++ + V + A +
Sbjct: 529 GLETYTQVTSPIRRYTDLLSHFQIKAHLRGEELPFERDQMQQIIYEVVSTSSEASFVERQ 588
Query: 512 SLRYWIIEFLRRQPKERQYRALILRFIK--DRTAALLLVEVGLQAAAWVSVGAQIGDEVE 569
+ RYW +++ + E + L+LR+++ D A +LL E+GL+ A ++G++++
Sbjct: 589 TNRYWSLQYFLQHSGE-VWHGLVLRWLREDDGLALILLEELGLEFAHRFDRNVKLGEQLQ 647
Query: 570 VKVEEAHPRDDIIYLKEVV 588
++V P+ D I +E V
Sbjct: 648 LEVSFCDPQRDEIRFREAV 666
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EFK + DR L V ++P+GKK+W+ D+NG S ++PQ+V F+V G E F +
Sbjct: 1 MEKGTLVEFKVNGDR-RLGVIEKPEGKKDWIAIDENGNSHKVRPQKVDFLVEG-ESFKYT 58
Query: 170 DISNFLQKAEDNL 182
DI F+++ +L
Sbjct: 59 DIPRFVKEVTPHL 71
>gi|147810722|emb|CAN71797.1| hypothetical protein VITISV_026278 [Vitis vinifera]
Length = 754
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/184 (63%), Positives = 148/184 (80%), Gaps = 6/184 (3%)
Query: 2 MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLNR 61
MAVRAVN+CS+FRS + PPL F+ C +HF + Q + + NLG P CR++R FL+
Sbjct: 351 MAVRAVNTCSIFRSTSSPPLYPFR--CRLHHFGAFQCK-SYPNLGLHFPICRTDRXFLSH 407
Query: 62 SGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV---SSGELLEDKLENQVLQKGLLLEF 118
G QSCSV+SLV+SVM+EL A RKR R++A K+ SSG+LLEDKL+NQVLQKGLLLEF
Sbjct: 408 GGVQSCSVYSLVESVMEELHASRKRKRIYASTKMGLTSSGQLLEDKLKNQVLQKGLLLEF 467
Query: 119 KKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKA 178
+KDS+RVLLAVAQ+ DGKKNWMV+DQNG + SIKPQQVT++VPG++ FD +ISNF+QKA
Sbjct: 468 RKDSERVLLAVAQKADGKKNWMVFDQNGVTSSIKPQQVTYIVPGIDNFDQTEISNFIQKA 527
Query: 179 EDNL 182
+DNL
Sbjct: 528 QDNL 531
>gi|37521185|ref|NP_924562.1| ribonuclease II [Gloeobacter violaceus PCC 7421]
gi|35212181|dbj|BAC89557.1| ribonuclease II [Gloeobacter violaceus PCC 7421]
Length = 663
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 230/419 (54%), Gaps = 15/419 (3%)
Query: 173 NFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIE 232
L+ + +R+D L +Y ID + E+DD LS L+DGR K++IH+ADPT++++
Sbjct: 252 KLLENPPADPASRRDFGRLAIYTIDDESTREIDDGLSLEMLEDGREKLWIHIADPTRWVQ 311
Query: 233 PGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE 292
PG + +A +R TSV+LPT PMFP +LA MSL G++ A++ ++ DG++
Sbjct: 312 PGDPLEAEARRRATSVYLPTGAIPMFPPELATGPMSLLPGQLNCALSFGAIIGPDGAVEN 371
Query: 293 YSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLET 352
+ V ++++ Y +TYE A L+ EE L L E A R + R Q+GA+ E
Sbjct: 372 FEVTPALVRTVYPVTYEEADPLIASG--EEPVLARLHEIALARRRHRHQRGAVSIDLPEA 429
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
++KV + E + +E D A R LVSEMMIL GE A + +P+R QP
Sbjct: 430 QVKVKDDE-------IRLEILGDSASRLLVSEMMILAGELAARLAIEAGIPVPFRTQPAP 482
Query: 412 NI-DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLL 470
+ LP GPVR A+ + M+ + P RH LGL Y Q TSPIRRY DLL
Sbjct: 483 ELPPADELLRLPAGPVREFAVCRCMQRGEVSV-YPARHAGLGLDAYTQATSPIRRYSDLL 541
Query: 471 AHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQY 530
H+Q+KA LR E P + L+ + ++++ + ++ S RYWI E+LR + + Q
Sbjct: 542 VHFQIKAHLRHEPLPLTLEHLKELLAMIDAAGQEVTQIERLSERYWIYEYLRHRRHQVQ- 600
Query: 531 RALILRFI-KDRTAALLLVE-VGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
L+L ++ D AL+L+E V L+ + G+ V++++ + PR D++ LKEV
Sbjct: 601 PGLVLDYLGGDPQRALVLLESVALRLPVRLDRPVSKGEMVDLQIVQVDPRQDLLVLKEV 659
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+++G L+EF+ R L V PDGKKN+ + Q G + ++ P+Q+T+ V G +
Sbjct: 1 MERGTLVEFRLQGGR-RLGVISGPDGKKNFNLQTQTGNTQTVHPRQITYQVAG-GPYRTS 58
Query: 170 DISNFLQKAEDNLLNRKDL 188
++ F + + N L++ DL
Sbjct: 59 ELPAFESQVQ-NYLDQADL 76
>gi|116074878|ref|ZP_01472139.1| Exoribonuclease II [Synechococcus sp. RS9916]
gi|116068100|gb|EAU73853.1| Exoribonuclease II [Synechococcus sp. RS9916]
Length = 583
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 154/426 (36%), Positives = 228/426 (53%), Gaps = 26/426 (6%)
Query: 175 LQKAEDNLLN-----------RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
LQ+AE NLLN R DL HL ID E ++DDALS R DG +++IH
Sbjct: 167 LQEAE-NLLNASQSSQPGDERRIDLCHLHCVTIDDSETRDIDDALSLERKPDGSKRIWIH 225
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
+ADP + I+PGS D++A RG+S++L PMFP+ L+ SLR G A + V
Sbjct: 226 IADPGRLIQPGSTLDQEAAARGSSLYLARGNQPMFPDVLSTGPFSLRAGHKSAAWSTWVE 285
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQG 343
L+ +G+IA Y + S +KP Y L+Y+ A EL+ L EEA+L L + R WR + G
Sbjct: 286 LNEEGAIAAYGITRSWVKPLYKLSYDDADELIDLAPPEEADLADLDQLLRRRKLWRERNG 345
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRL-VSEMMILCGEAIATYGSFNNLA 402
A+ E RI+ + +L +E RL V+E MIL G A YG + L
Sbjct: 346 ALLMDLPEGRIRCRDG-------DLSLEITEPSVSRLMVAEAMILTGAVTAQYGVDHGLP 398
Query: 403 LPYRGQPQSNIDVSA-FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTS 461
LPYR Q +++ A + LP+G VR +AI + + + KP H LGLP YVQ TS
Sbjct: 399 LPYRSQLPADLPSPAQLSELPDGAVRFAAIKRCLSRGLMGT-KPASHFSLGLPAYVQATS 457
Query: 462 PIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFL 521
PIRRY DL+ Q++A G SP S +L+ + V++ TR +S R+W +
Sbjct: 458 PIRRYCDLIVQRQIQAHQAG-SPQLSEEELQELVGSVDLATREGIGISREDQRHWQQVWF 516
Query: 522 RRQPKERQYRALILRFIK--DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRD 579
+++Q++A LR+++ DR + + + L AA G++ GD++++ V E P
Sbjct: 517 EHH-RDQQWQADFLRWLRPQDRLGLIRIDALALDLAAECPPGSEPGDQLQLHVLEVDPIR 575
Query: 580 DIIYLK 585
D + L+
Sbjct: 576 DQLRLQ 581
>gi|187438624|gb|ABO20871.2| chloroplast ribonuclease [Chlamydomonas reinhardtii]
Length = 1083
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 221/431 (51%), Gaps = 40/431 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DLTHL+ + ID E+DD LS RL G +++IHVADPT++I P + D +
Sbjct: 602 NREDLTHLRCFTIDDAATTEVDDGLSLERLAGGGTRIWIHVADPTRWISPDTQLDLAGRQ 661
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP + PMFP LA SLR G+VC+A++V V L DGS+A V S + +
Sbjct: 662 RGRTLYLPWGSVPMFPRALAEGPFSLRAGQVCDALSVGVELRPDGSVASARVAPSRVLVS 721
Query: 304 YMLTYESATELLHLNL----------------------------EEEAELKILSEAAALR 335
+ LTY+ A L E A+L+ L AA LR
Sbjct: 722 HKLTYDGADAALGGAEAAGGAAAAGGAAAAGGAGGAGVAGGLDGEALADLQELRRAATLR 781
Query: 336 LQWRLQQGAIDTATLETRIKVANPED---PEPIINLYVEDQADPAMR-LVSEMMILCGEA 391
Q+R +G I+ E +I V PE P + + Q + A R LV+EMMIL GEA
Sbjct: 782 RQYREGRGCIEIPLPEAKIHVP-PEQLDRARPAVTVTRISQWESASRSLVAEMMILTGEA 840
Query: 392 IATYGSFNNLALPYRGQPQSNIDVSA-FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGV 450
+ T G+ L LPYR Q + + +A A LPEGP R A+ + M + + P RH
Sbjct: 841 VGTVGAEAELPLPYRAQDEPELPPAARLAALPEGPCRGFALKRCMTRSTVAA-APQRHAA 899
Query: 451 LGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSN 510
L L YVQFTSPIRRY D+LAHY +KA LRGE PFS Q+E + R
Sbjct: 900 LALDAYVQFTSPIRRYSDMLAHYNLKAWLRGEPLPFSGRQIEAVMEAAAEAGRELGGAER 959
Query: 511 TSLRYWIIEFLRRQPKERQYRALILRFIKDRTA--ALLLVEVGLQAAAWV--SVGAQIGD 566
+ YW+ E+LR + Y A+ L + ++ A LL + GL+ V ++ GD
Sbjct: 960 EAESYWVAEYLRLR-WGSDYPAMALGWQREEMGLVAFLLEDQGLEVVVKVPSTMAWAPGD 1018
Query: 567 EVEVKVEEAHP 577
+ + EA+P
Sbjct: 1019 KAVLAPSEANP 1029
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVP 161
LQ G L+EF+K+ DR +L + PDGKKNW V DQ+G SI+P+QV+ ++P
Sbjct: 306 LQAGCLVEFEKN-DRGVLGLVTGPDGKKNWFVVDQSGRRSSIQPKQVSLLLP 356
>gi|384248905|gb|EIE22388.1| RNB-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 929
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 222/432 (51%), Gaps = 29/432 (6%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHL V ID E+DD LS L+ GR ++++HVADPT+YI P D +A +
Sbjct: 454 NRLDLTHLPVVTIDDAGTTEVDDGLSVEFLEGGRARLWVHVADPTRYIRPEDTLDLEARR 513
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++++LPT MFP +LA SLRQGE C A+++S L DG ++ +SV + I PT
Sbjct: 514 RGSTMYLPTGAIFMFPGQLATGPFSLRQGEPCCALSISAELSPDGELSAHSVAATRITPT 573
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
+ +TY+ + + E +L L +A+ R WR +QGA E ++VA+P P
Sbjct: 574 HRMTYDQVDAAI-ASGELPPDLCALLQASEARAAWRTRQGAASITLDECEVRVADPRAPN 632
Query: 364 PIINL-YVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHL 421
P + L ++ A LVSEMMI+ G+ AT G L LPYRGQ ++ + +
Sbjct: 633 PRVTLERLQTGTSAARTLVSEMMIMAGQVAATVGQEAGLPLPYRGQAKAVLPTEEELKGV 692
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
PEGP R+ + M + H LGLP YVQ TSPIRRY D+LAH+Q+KA L
Sbjct: 693 PEGPCRAVLLRSRMVRGIATTHDALPHAGLGLPAYVQVTSPIRRYSDMLAHWQLKARLHS 752
Query: 482 ESP--PFSAGQLEGMASIVNMQTRIARRLS--------NTSLR-----------YWIIEF 520
P P + ++ M+ + R++ +++R YW+ ++
Sbjct: 753 PLPLHPLTLNSIDQNFGPAMMRKLLGRKIRPPVVLDDVTSNVREHITLEREINNYWLAKY 812
Query: 521 LRRQP---KERQYRALILRFIKDRT--AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEA 575
+ R + AL+L +I+ T A + L E L+ + A++G+ + + A
Sbjct: 813 FEAEKAADPTRTWPALLLHWIRQDTGLAQVQLEESALETVVRIDRPARVGERLLLSCVAA 872
Query: 576 HPRDDIIYLKEV 587
P + L+E
Sbjct: 873 DPPAGMYRLEEA 884
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 112 KGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDI 171
+G L+EF+KDS + LA+ + DGK+NW D G S++PQQV +V+PG E + +D+
Sbjct: 181 EGRLIEFQKDS-KSGLALLLKKDGKRNWSAVDTRGTVYSLRPQQVAYVLPG-EGYTQQDL 238
Query: 172 SNFLQKAE 179
A+
Sbjct: 239 ETISTAAQ 246
>gi|308808199|ref|XP_003081410.1| ribonuclease II (ISS) [Ostreococcus tauri]
gi|116059872|emb|CAL55579.1| ribonuclease II (ISS) [Ostreococcus tauri]
Length = 758
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 218/411 (53%), Gaps = 9/411 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL YAID E+DDA+SA L +GRI+V++HVADP++++ S D A
Sbjct: 348 SRVDLTHLSAYAIDDAGTVEVDDAVSAESLDEGRIRVWVHVADPSRWVTMNSTLDITARG 407
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSL-RQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
R T+++ PT PMFP ++ MSL E A+T+ + +DG+I ++ + S++K
Sbjct: 408 RATTLYYPTELVPMFPLDISAGPMSLGANAEASEAMTIRADVDADGNIEDFDITPSLVKI 467
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV----AN 358
TY+ L ++ +A L++L + A+ R + R G++ ET IKV A
Sbjct: 468 DRRWTYDEVDAELD-SVTCDASLRLLYKVASARDERRADDGSVTIILPETSIKVQGATAR 526
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSA 417
+ + + + + + LVSE+MIL G+ +A +G NL LP+RGQ + +
Sbjct: 527 GGEDDATVEMVKLESNTASRTLVSELMILAGDVVARFGIKENLPLPFRGQGEPRLMSDDE 586
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
+ +PEG + A+ M A+ P H LGL YVQFTSPIRRY DLLAHYQ+KA
Sbjct: 587 WDEIPEGICQDMAMRSCMNAS-TGGATPRPHSGLGLDAYVQFTSPIRRYADLLAHYQIKA 645
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
LRGE PPF +E + + A R + +YW + QP ++ A +++F
Sbjct: 646 YLRGEQPPFDTESMERVIEDIGNSVGGAIRSQRETSKYWASVYFASQPASARWTAKVVKF 705
Query: 538 IK-DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
++ D ++ ++G ++ + A +G+ V ++V A P I V
Sbjct: 706 LRGDDLVIVIFDDLGFESVVKLDRPALLGESVTLRVVGAEPHAGSITFARV 756
>gi|297597941|ref|NP_001044770.2| Os01g0841800 [Oryza sativa Japonica Group]
gi|255673863|dbj|BAF06684.2| Os01g0841800 [Oryza sativa Japonica Group]
Length = 548
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/158 (75%), Positives = 138/158 (87%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 375 RKDLSTLKVYAIDVDEADELDDALSAARLPDGRIKVWIHVADPTSLVQPRSIIDREAMHR 434
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPTAT+PMFPE+LAM MSL+QG C +VTVSV+L DGSIAEYS++NSIIKPTY
Sbjct: 435 GTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVSVILQPDGSIAEYSIENSIIKPTY 494
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQ 342
MLTYESATELL++NLEEE EL+IL EAA+LR QWR Q
Sbjct: 495 MLTYESATELLYMNLEEEEELRILQEAASLRAQWRRSQ 532
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 105/157 (66%), Gaps = 6/157 (3%)
Query: 48 RLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLE 106
R + R+ F G + VH LVDSV++EL + R R RV AK+ + + EL ++K++
Sbjct: 35 RPDSARAGWHFSLYGGCRGRQVHGLVDSVLEELRSQR-RGRVSAKIGLQGTKELSDNKID 93
Query: 107 NQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+ LQKGLLLEF+KDS+R LLAV +RPDGKKNW V DQNG SIKPQQVT+V+PG+ +
Sbjct: 94 KRTLQKGLLLEFQKDSERFLLAVVERPDGKKNWKVTDQNGILSSIKPQQVTYVIPGIINY 153
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADE 203
+H I F++KA+D L D T L+ +++ E D+
Sbjct: 154 NHSRIDEFIKKAQDLL----DPTVLECAWMELSENDK 186
>gi|56784235|dbj|BAD81730.1| ribonuclease II-like protein [Oryza sativa Japonica Group]
Length = 543
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/158 (75%), Positives = 138/158 (87%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 370 RKDLSTLKVYAIDVDEADELDDALSAARLPDGRIKVWIHVADPTSLVQPRSIIDREAMHR 429
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPTAT+PMFPE+LAM MSL+QG C +VTVSV+L DGSIAEYS++NSIIKPTY
Sbjct: 430 GTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVSVILQPDGSIAEYSIENSIIKPTY 489
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQ 342
MLTYESATELL++NLEEE EL+IL EAA+LR QWR Q
Sbjct: 490 MLTYESATELLYMNLEEEEELRILQEAASLRAQWRRSQ 527
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 105/157 (66%), Gaps = 6/157 (3%)
Query: 48 RLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLE 106
R + R+ F G + VH LVDSV++EL + R R RV AK+ + + EL ++K++
Sbjct: 30 RPDSARAGWHFSLYGGCRGRQVHGLVDSVLEELRSQR-RGRVSAKIGLQGTKELSDNKID 88
Query: 107 NQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+ LQKGLLLEF+KDS+R LLAV +RPDGKKNW V DQNG SIKPQQVT+V+PG+ +
Sbjct: 89 KRTLQKGLLLEFQKDSERFLLAVVERPDGKKNWKVTDQNGILSSIKPQQVTYVIPGIINY 148
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADE 203
+H I F++KA+D L D T L+ +++ E D+
Sbjct: 149 NHSRIDEFIKKAQDLL----DPTVLECAWMELSENDK 181
>gi|255080276|ref|XP_002503718.1| ribonuclease [Micromonas sp. RCC299]
gi|226518985|gb|ACO64976.1| ribonuclease [Micromonas sp. RCC299]
Length = 851
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 217/428 (50%), Gaps = 36/428 (8%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT L+ YAID + E+DDA+SA L G+I+V++HVAD T+++ G+ + +A R
Sbjct: 414 RKDLTRLRCYAIDGEGTVEVDDAVSAEALPGGKIRVWVHVADATRWVGLGTPLEAEAESR 473
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S + P PMFP +A MSL GE AV+V+ V+ G+ EY V S I+ T
Sbjct: 474 GASGYHPRGVLPMFPLPVAAGLMSLTPGEPKCAVSVTAVIDESGATEEYWVGTSTIRVTR 533
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
T ++L L++L EAA R + RL++GA++ T E +V + + E
Sbjct: 534 AATEGEVIKMLAEEPGRHESLELLVEAARRRRELRLKRGAVEVRTPEATARVIDVGEGEG 593
Query: 365 IINL------------YVEDQADPAMR--------------------LVSEMMILCGEAI 392
+ E A R LV E MILCGE I
Sbjct: 594 FVERDDIPGGVRTGGNRCEQSATAVRRAEAAALDVRLTRGDHNDVKDLVGEAMILCGELI 653
Query: 393 ATYGSFNNLALPYRGQPQS-NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVL 451
A +GS N + LPYRGQ + +I + P G R MR A P RH L
Sbjct: 654 ARFGSENGVPLPYRGQLEPRDISQKTWDETPPGLCREVLKRHSMRGAN-QGPTPRRHAGL 712
Query: 452 GLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNT 511
G+ YVQF+SPIRRY DLLAHYQVKA LRGE+PP +A L +TR R
Sbjct: 713 GIDAYVQFSSPIRRYTDLLAHYQVKAFLRGETPPLNADALSTRLDANGDRTRTLRAACRE 772
Query: 512 SLRYWIIEFLRRQPKERQYRALILRFI-KDRTAALLLV-EVGLQAAAWVSVGAQIGDEVE 569
S ++W IE+ RR ++ + +++++ KD AAL+ E G++ V ++GD V
Sbjct: 773 SDQFWTIEWYRRGGVDKDHVGTVVKWVKKDANAALVCFDETGVEWKCVVRKRTRLGDAVT 832
Query: 570 VKVEEAHP 577
++V EA P
Sbjct: 833 MRVREADP 840
>gi|33863013|ref|NP_894573.1| ribonuclease II [Prochlorococcus marinus str. MIT 9313]
gi|33634930|emb|CAE20916.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9313]
Length = 688
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 199/358 (55%), Gaps = 13/358 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL+ L+ Y +D + E+DDA+S ++ D ++IH+ADP + I S D +A
Sbjct: 290 NRLDLSDLRTYTLDDHQTQEIDDAIS-LQCVDQDNWIWIHIADPARLIPVDSPLDLEARA 348
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L M P +A+E +SLR G C A++V+VVL G IA V + I+P
Sbjct: 349 RATSLYLADGLRTMLPLSVAVEVLSLRAGRRCAALSVAVVLDESGCIAGTRVCRTWIRPC 408
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE EL+ L + +L L+ R WR +QGA+ E R KV +D +
Sbjct: 409 YRLTYEDGDELIELAPPGDEDLSTLASLLTTRQLWRERQGALLLEQSEGRFKV---KDDQ 465
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
P +++ ++ PA RLVSE MIL G IA +G N+ALPYR QP + + + + L
Sbjct: 466 PELHIV---ESSPARRLVSEAMILMGTVIAEFGKRQNIALPYRSQPPTQLPSATELSQLI 522
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
EGPVR +AI + + + R P+ H LGL YVQ +SPIRRY DLLAH QV A L G
Sbjct: 523 EGPVRHAAIKRCLSRGVLGTR-PMAHFSLGLSAYVQASSPIRRYADLLAHRQVVAHL-GG 580
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYW-IIEFLRRQPKERQYRALILRFIK 539
S P S L ++ R A+++ R+W + FL+ + Q+ AL LR++K
Sbjct: 581 SVPLSEHALMEQLDVLEDPLRQAQQIQREDQRHWQKVWFLKH--RHEQWPALFLRWLK 636
>gi|124023181|ref|YP_001017488.1| ribonuclease II [Prochlorococcus marinus str. MIT 9303]
gi|123963467|gb|ABM78223.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9303]
Length = 683
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 204/385 (52%), Gaps = 25/385 (6%)
Query: 169 KDISNFLQKAEDNLLN------------RKDLTHLKVYAIDVDEADELDDALSAMRLQDG 216
K +Q D LLN R DL+ L+ Y +D + E+DDA+S + D
Sbjct: 258 KSFEGSVQAQADQLLNKFEQLSFASDDSRLDLSDLRTYTLDDHQTQEIDDAISLQSV-DQ 316
Query: 217 RIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCN 276
V+IH+ADP + I S D +A R TS++L PM P +A E +SLR G C
Sbjct: 317 DSWVWIHIADPARLIPVDSPLDLEARARATSLYLADGLRPMLPLSVAAEVLSLRAGRRCA 376
Query: 277 AVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL 336
A++V+VVL G IA+ V + I+P Y LTYE EL+ L + +L L+ R
Sbjct: 377 ALSVAVVLDESGCIADTRVCRTWIRPCYRLTYEDGDELIELAPPGDEDLSTLASLLKKRQ 436
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYG 396
WR +QGA+ E R KV +D +P +++ ++ PA RLVSE MIL G IA +G
Sbjct: 437 LWRERQGALLLEQSEGRFKV---KDDQPELHVV---ESTPARRLVSEAMILMGTVIAEFG 490
Query: 397 SFNNLALPYRGQPQSNI-DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPG 455
NLALPYR QP + + + + L EGPVR +AI + + + R P+ H LGL
Sbjct: 491 KRQNLALPYRSQPPTQLPSATDLSQLIEGPVRHAAIKRCLSRGVLGTR-PMAHFSLGLSA 549
Query: 456 YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRY 515
YVQ +SPIRRY DLLAH QV A L G S P S L + R A+++ R+
Sbjct: 550 YVQASSPIRRYADLLAHRQVVAHL-GGSVPLSEHALMVQLDALEDPLRQAQQIQREDQRH 608
Query: 516 W-IIEFLRRQPKERQYRALILRFIK 539
W + FL+ + Q+ AL LR+++
Sbjct: 609 WQKVWFLKH--RHEQWPALFLRWLR 631
>gi|414879755|tpg|DAA56886.1| TPA: hypothetical protein ZEAMMB73_060871 [Zea mays]
Length = 543
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/168 (70%), Positives = 142/168 (84%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 374 RKDLSTLKVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCLVKPHSIIDREAMHR 433
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPT T+PMFPE+LAM MSL+QG+ C +VTVSV+L+ DGSIAEY+++NS+IKPTY
Sbjct: 434 GTSIFLPTTTFPMFPERLAMNSMSLQQGKECKSVTVSVILNLDGSIAEYTLENSVIKPTY 493
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLET 352
MLTYESATELL++NLEEE EL+IL EAA +R QWR Q +A L T
Sbjct: 494 MLTYESATELLYMNLEEEEELRILQEAARIREQWRRSQVCAKSALLST 541
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 98/144 (68%), Gaps = 6/144 (4%)
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLENQVLQKGLLLEFK 119
R G +S HS+VD VM+EL + R+ AK+ + + EL ++K+ + LQKGLLLEF+
Sbjct: 47 RGGCRSRLAHSIVDLVMEELRSRRRVRVS-AKIGLQGTKELPDNKIVKRTLQKGLLLEFQ 105
Query: 120 KDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAE 179
KD +R LLAV +RPDGKKNWMV DQNG SIKPQQVT+VVPG+ FD+ I FL+K +
Sbjct: 106 KDPERSLLAVVERPDGKKNWMVTDQNGVMSSIKPQQVTYVVPGIMNFDYSKIDEFLEKTQ 165
Query: 180 DNLLNRKDLTHLKVYAIDVDEADE 203
NLL D T L+ +++ E D+
Sbjct: 166 -NLL---DPTILECAWMELSEKDK 185
>gi|116070582|ref|ZP_01467851.1| Exoribonuclease II [Synechococcus sp. BL107]
gi|116065987|gb|EAU71744.1| Exoribonuclease II [Synechococcus sp. BL107]
Length = 674
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 217/398 (54%), Gaps = 14/398 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL HL Y +D E+DDA+S + +Q+G + +++H+ADP + I PGS D++A +
Sbjct: 277 DRLDLCHLATYTLDDAGTREIDDAVS-LDVQNGEVWIWVHIADPARLISPGSPLDQEARR 335
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L PM P LA +SLR G+ A++VSV L S G+IAE + S ++P
Sbjct: 336 RATSLYLADGVLPMLPLGLAAGPLSLRAGQRTAAISVSVRLDSAGAIAERRIARSWVQPR 395
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY EL+ L + L LS+ LR +WR QQGA+ +E R + + D
Sbjct: 396 YGLTYADGDELIELAPPGDETLADLSQLMQLRSRWRRQQGALMFDRMEGRFRRS---DGA 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
+ L + PA +VSE M+L G +A +G + LALP+R QP + + + LP
Sbjct: 453 LFLQLV---EPSPARLMVSEAMLLMGAVVAEFGCQHELALPFRSQPPAELPSQTELDQLP 509
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
EGP R +AI + + + + +P+ H LGL YVQ TSPIRRY DL +H Q+ A L
Sbjct: 510 EGPARDAAIKRCL-SRGVQGTQPMAHFSLGLSAYVQATSPIRRYADLASHRQIIAQLENT 568
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
+ P S ++ + ++ R + ++S R+W + Q +++++ A LRF++ D
Sbjct: 569 T-PLSEPEMGELIDDLDDPLRQSIQISREDQRHWQQVWF-SQYRDQRWDAEFLRFLRPQD 626
Query: 541 RTAALLLVEVGLQAAAWVSVG-AQIGDEVEVKVEEAHP 577
A + L ++ + V G GD + + V+ A P
Sbjct: 627 GLALVHLADLAMDVVGRVDQGNPNPGDRMTMTVKLADP 664
>gi|194476531|ref|YP_002048710.1| probable ribonuclease II [Paulinella chromatophora]
gi|171191538|gb|ACB42500.1| probable ribonuclease II [Paulinella chromatophora]
Length = 476
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 136/393 (34%), Positives = 211/393 (53%), Gaps = 12/393 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT L+ + ID ELDDALS + QDG ++IH+ADP + + PGS D +A +
Sbjct: 75 QRLDLTGLRCFTIDDPGTQELDDALSYEQDQDGNEWIWIHIADPDRLVFPGSDLDLEAKQ 134
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L + PMFP +LA +SL+QG+ C AV+ +++L + G + + + S I PT
Sbjct: 135 RATSLYLASGGLPMFPMELAAGSLSLKQGQRCAAVSTAILLDNCGEVVKIILQRSWIYPT 194
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE EL+ L + EL L+ +LR WR +QGA++ E + +D E
Sbjct: 195 YRLTYEDGDELIELAPNGDEELSHLTRLMSLRRGWRQRQGALELEKSEGKF----CQDGE 250
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
I +E A ++V+E MIL G +A G N+ LPYR QP + + ++ LP
Sbjct: 251 TIGLEIIETSC--ARQMVAESMILLGATLADLGKRKNIVLPYRSQPSAELPLTIELNTLP 308
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
EGPVR +AI + + + K H LGL YVQ TSPIRRY DL+ Q+ RG+
Sbjct: 309 EGPVRHTAIKRCLSRGLLG-TKAAPHFSLGLSCYVQATSPIRRYGDLIVQRQLLNYQRGK 367
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF--IKD 540
S G + + +++ T+ A +++ R+W + Q + +Q++A LR+ ++D
Sbjct: 368 D-LLSEGDILNLTQSIDIATKEATQIAREDQRHW-QQVWFEQHRCQQWQAQFLRWLRVQD 425
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVE 573
+ + + L+ A + GD + VE
Sbjct: 426 HIGLVYIDSIALELAVVCKQDSSPGDSIITIVE 458
>gi|87303682|ref|ZP_01086457.1| probable ribonuclease II [Synechococcus sp. WH 5701]
gi|87281787|gb|EAQ73752.1| probable ribonuclease II [Synechococcus sp. WH 5701]
Length = 674
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 143/406 (35%), Positives = 221/406 (54%), Gaps = 14/406 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R+DLT L+ Y +D + +E+DDA++ L G +++++H+ADP + + GS D +A +
Sbjct: 277 SRRDLTALRSYTLDDADTEEIDDAVALELLDGGGLRLWVHIADPGRLVASGSPLDLEARR 336
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L PMFP LA+ SLRQG+ C A + +V L DGS+A + + S I PT
Sbjct: 337 RGSSLYLAAGVVPMFPLPLAVGPFSLRQGQRCAAWSCAVELAEDGSVARHELVRSWICPT 396
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY L+ L EE +L L R +WR+ +GA+ E RI+ +
Sbjct: 397 YRLTYGDGDALIDLAPPEEPDLAQLQGLLERRRRWRVARGALSMEQSEGRIRCQDDH--- 453
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
L + D + PA LV+E MIL G +A + + LA+P+RGQP S + S LP
Sbjct: 454 --AELEITDPS-PARALVAEAMILTGSVVAAHAAELGLAMPFRGQPVSELPTESELEALP 510
Query: 423 EGPVRSSAIVKIM-RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+GPVR +A+ + + R + P H LGLP YVQ TSPIRRY DL+A Q+ A L G
Sbjct: 511 DGPVRHAALRRCLSRGSTSAAVSP--HFSLGLPAYVQATSPIRRYADLVAQRQLAAILSG 568
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK-- 539
E P A Q+ + ++ R ++S R+W + + ER + A+ LR+++
Sbjct: 569 EE-PLDATQMGELLEELDPVIREGIQISREDQRHWQQVWFEQHRGER-WPAVFLRWLRPQ 626
Query: 540 DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 585
DR A + L + + A Q GD + V+V++ D++ L+
Sbjct: 627 DRLALVHLEALAMDQAVRAPESCQPGDALTVQVQQVDSLSDLLRLE 672
>gi|33865758|ref|NP_897317.1| ribonuclease II [Synechococcus sp. WH 8102]
gi|33632928|emb|CAE07739.1| probable ribonuclease II [Synechococcus sp. WH 8102]
Length = 682
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 203/384 (52%), Gaps = 26/384 (6%)
Query: 171 ISNFLQKAEDNLLN---RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
I L +A D+ R DLT +VY +D E+DD L A+ DG ++IH+ADP
Sbjct: 269 IDELLARAADSCSGDDTRVDLTAQRVYTLDDSSTKEIDDGL-ALEPGDGGPWIWIHIADP 327
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ IEP S D++A +R TS++L PM P KLA E SLR G+ C A++V V+L +
Sbjct: 328 ARLIEPDSPLDREARRRATSLYLANGVLPMLPLKLATEIFSLRAGQRCPALSVGVLLDDE 387
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDT 347
G++ S S ++P Y LTYE EL+ L + +L LS R WR ++GAI+
Sbjct: 388 GAVVASSCQRSWVQPRYRLTYEDGDELIELVPPGDEDLAQLSALLKRRFNWRQRRGAINF 447
Query: 348 ATLETRIK--VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
E R + A PE L V D + PA +VSE M+L G A+A G +ALPY
Sbjct: 448 ERQEGRFRRGAAGPE-------LQVIDPS-PARVMVSEAMLLMGAAVAEIGRREGMALPY 499
Query: 406 RGQPQSNI-DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIR 464
R QP + + A +PEGP R +A+ + + + + P+ H LGL YVQ TSPIR
Sbjct: 500 RSQPPAELPSAQELAEIPEGPARDAAVKRCL-SRGLQGTSPMPHFSLGLEAYVQATSPIR 558
Query: 465 RYMDLLAHYQVKACLRGE---SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFL 521
RY DLLAH Q+ A + S P QL+ + + +I+R R+W +L
Sbjct: 559 RYADLLAHRQLIAWIEQRSVMSEPLLREQLDSLEDPLRQSIQISR----EDQRHWQQVWL 614
Query: 522 RRQPKERQYRALILRFIK--DRTA 543
Q +++Q+ LR+++ DR A
Sbjct: 615 -EQHRDQQWSVQFLRWLRPQDRLA 637
>gi|145350966|ref|XP_001419862.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580094|gb|ABO98155.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 645
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 218/404 (53%), Gaps = 13/404 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRL-QDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DLT+L+ YAID E E+DDA+SA L DG+I+V++H+ADPT++I GS D A
Sbjct: 233 SRVDLTYLRAYAIDDAETVEVDDAVSAEALGDDGQIRVWVHIADPTRWIPLGSPLDAIAR 292
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSL--RQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
+R T+++ PT PMFP ++A MSL R A+TV + +G+I ++ + S +
Sbjct: 293 QRATTLYYPTEIVPMFPLEIAAGPMSLGSRSDVASEAMTVRADIDREGNIMDFEIMPSFV 352
Query: 301 KPTYMLTY-ESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV--- 356
K TY E EL +E L++L + A+ R + R + G++ E + V
Sbjct: 353 KLDRRWTYDEVDVELDSATCDEG--LRLLYKVASARDERRAEDGSVTIILPENSVNVRGA 410
Query: 357 -ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-D 414
A D + I + + PA LVSE+M+L G+ +A +G N+ LP+RGQ + +
Sbjct: 411 TARGGDGDVAITMSKINGHTPARMLVSELMVLVGDVVARFGVRENIPLPFRGQGEPRLMS 470
Query: 415 VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ 474
+ +PEG + A+ M ++ P H LGL YVQFTSPIRRY D+LAH+Q
Sbjct: 471 DDEWDGIPEGICQDMAMRSCM-TSSTSGATPRPHSGLGLSAYVQFTSPIRRYADVLAHHQ 529
Query: 475 VKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
+KA LRGE PF +E + V A R + +YW + QP + ++ A +
Sbjct: 530 IKAYLRGEPLPFDEQSMENVIEDVGTTVGGAIRSQRETSKYWASAYFDAQPADARWTATV 589
Query: 535 LRFIK-DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHP 577
++FI+ D ++ ++G + + GA +G+ + +K +A P
Sbjct: 590 VKFIRGDDLVLVIFDDLGYETVVKLDRGAVLGETLTLKFVDADP 633
>gi|78184711|ref|YP_377146.1| exoribonuclease II [Synechococcus sp. CC9902]
gi|78169005|gb|ABB26102.1| Exoribonuclease II [Synechococcus sp. CC9902]
Length = 674
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 215/398 (54%), Gaps = 14/398 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL HL Y +D E+DD +S + Q+G + +++H+ADP + I PGS D++A +
Sbjct: 277 DRLDLCHLATYTLDDAGTREIDDGIS-LDDQNGEVWIWVHIADPARLIPPGSPLDQEARR 335
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L PM P LA +SLR GE AV+V+V L S G+IA+ + S ++P
Sbjct: 336 RATSLYLADGVLPMLPLSLAAGPLSLRAGERTAAVSVAVRLDSAGAIADRRIARSWVRPR 395
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY EL+ L + L LS LR +WR QQGA+ +E R + E
Sbjct: 396 YGLTYADGDELIELAPPGDETLADLSRLMQLRSRWRRQQGALMFDRMEGRFRRQEGE--- 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLP 422
++L + + + PA +VSE M+L G +A +G N L LP+R QP + + A LP
Sbjct: 453 --LSLQLVEPS-PARLMVSEAMLLMGAVVADFGCQNTLPLPFRSQPPAELPSQAELDQLP 509
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
EGP R +AI + + + + +P+ H LGL YVQ TSPIRRY DL +H Q+ A L G
Sbjct: 510 EGPARDAAIKRCL-SRGVQGTQPMAHFSLGLAAYVQATSPIRRYADLASHRQIIAQLEG- 567
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
S P S ++ + ++ R + ++S R+W + Q +++++ A LR+++ D
Sbjct: 568 STPLSEPEVGELIDDLDDPLRQSIQISREDQRHWQQVWF-AQHRDQRWDAEFLRWLRPQD 626
Query: 541 RTAALLLVEVGLQAAAWVS-VGAQIGDEVEVKVEEAHP 577
A + L ++ + V GD + + V+ A P
Sbjct: 627 GLALVHLADLAMDVVGRVDQANPNPGDRMTLTVKLADP 664
>gi|148242325|ref|YP_001227482.1| exoribonuclease R/ribonuclease II [Synechococcus sp. RCC307]
gi|147850635|emb|CAK28129.1| Exoribonuclease R/ribonuclease II [Synechococcus sp. RCC307]
Length = 655
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 139/410 (33%), Positives = 220/410 (53%), Gaps = 14/410 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DLTHL ++ID E+DDA+ R +DG + +++H+ADP +++EPG D +A +
Sbjct: 254 QRRDLTHLSCFSIDSASTQEVDDAIGLER-RDGDLWIWVHIADPHQWLEPGDRLDLEAQR 312
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++++L PMFP +A + MSLR C A++V V+L +DG+I S +K +
Sbjct: 313 RGSTLYLSGGAMPMFPMAVARDCMSLRPMRRCGALSVGVLLDADGAITAVKPCRSWVKVS 372
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE A +L+ L E+ +L L+E R WR QQGA+ E R+ +
Sbjct: 373 YGLTYEDADDLIELAPPEDPDLAELAELLKRRTAWREQQGALLMEQAEGRLFRNGAAE-- 430
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+ L + + A VSE MIL G A+A + S + LA+P+R Q S+ D + P+
Sbjct: 431 --LALEITEPGL-ARSCVSEAMILAGAAMAEWSSQHELAMPFRVQAGSSQDNAEANQWPQ 487
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH---YQVKACLR 480
GPVR + + + + + K HG LGLP Y+Q+TSPIRRY DLLAH Q L
Sbjct: 488 GPVRWAQQRRGLSRSRLQ-SKAEPHGSLGLPMYLQWTSPIRRYGDLLAHRQWLQFSGHLE 546
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQ-PKERQYRALILRFIK 539
GE P A + + ++ R A ++ R ++E+L P+ Q L+ +
Sbjct: 547 GE--PLDAEAIGALLQRLDQGQREASLIARQDQRMALLEWLAGPIPQWPQPATLLSWLRE 604
Query: 540 DRTAALLLVEV-GLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
D AL+ +E ++ A + G +GD++ +++E P D++ LK +
Sbjct: 605 DNGIALVRLEAWAMELPAQIEPGLGLGDQLFIQLERVDPASDLLRLKGIA 654
>gi|260434908|ref|ZP_05788878.1| exoribonuclease II [Synechococcus sp. WH 8109]
gi|260412782|gb|EEX06078.1| exoribonuclease II [Synechococcus sp. WH 8109]
Length = 676
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 139/399 (34%), Positives = 217/399 (54%), Gaps = 16/399 (4%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL Y++D E+DDALS R +DG ++IH+ADP++ I+ S D +A +
Sbjct: 279 QRIDLTHLATYSLDDSGTREIDDALSLER-RDGVDWIWIHIADPSRLIDIDSPLDHEARR 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L PM P +LA +SLR G+ C A++V+V L DG++AE + S I+P
Sbjct: 338 RATSLYLAEGVMPMLPLELAAGPLSLRAGQRCAALSVAVCLDDDGAVAEQRIARSWIRPR 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY EL+ L + L LS LR++WR +GA+ E R + ++
Sbjct: 398 YGLTYTDGDELIELAPPGDEALSDLSGLLMLRMRWRRSKGAVMFDQPEGRFRYSD----- 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
+ L V D + P+ +VSE M+L G +A++G ++L LP+R QP + + + +P
Sbjct: 453 GALTLQVIDPS-PSRLMVSEAMLLMGAVVASFGQEHSLPLPFRSQPAAELPSIDELDRIP 511
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
EGP R +AI + + + + + + H LGL YVQ TSPIRRY DL+AH Q+ A L
Sbjct: 512 EGPARDAAIKRCL-SRGVQGTRAMPHFSLGLEAYVQATSPIRRYADLVAHRQIIAQLSAL 570
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYW-IIEFLRRQPKERQYRALILRFIK-- 539
+ P +L + ++ R + ++S R+W + F Q + A+ LR+++
Sbjct: 571 A-PMDEERLSEVIDDLDDPLRQSIQISREDQRHWQQVWFAEHQ--NTVWSAVFLRWLRPQ 627
Query: 540 DRTAALLLVEVGLQAAAWVSV-GAQIGDEVEVKVEEAHP 577
DR A + + E+ + VS GD +E+KV A P
Sbjct: 628 DRLALVHVSELAIDLVGCVSAEDPAPGDGLELKVGRADP 666
>gi|302832602|ref|XP_002947865.1| hypothetical protein VOLCADRAFT_103637 [Volvox carteri f.
nagariensis]
gi|300266667|gb|EFJ50853.1| hypothetical protein VOLCADRAFT_103637 [Volvox carteri f.
nagariensis]
Length = 1028
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/435 (34%), Positives = 217/435 (49%), Gaps = 44/435 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-----IKVYIHVADPTKYIEPGSLSDK 239
R+DLTHL+V+ ID E+DD LS RL+ I+++IHVADPT++I PGS D
Sbjct: 473 REDLTHLRVFTIDDVTTTEVDDGLSLERLEGSEGAAAGIRIWIHVADPTRWIRPGSNLDM 532
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
R +++LP + PMFP +LA SLR+G+VC+A++V V L+ DGS+ V S
Sbjct: 533 AGRDRIRTLYLPWGSVPMFPRQLAEGPFSLREGQVCDAMSVCVRLNKDGSLERPRVVPSR 592
Query: 300 IKPTYMLTYESATELLHLNLE------------------EEAELKILSEAAALRLQWRLQ 341
++ + LTY+ A +L E+ +L AA L +
Sbjct: 593 VRVNHKLTYDQADAVLAALAAGDGNGTEAAGTGAGAVAVEDGSRGVLDVAAVADLLALRE 652
Query: 342 Q-----------GAIDTATLETRIKV--ANPEDPEPIINLYVEDQAD-PAMRLVSEMMIL 387
G I+ E +I V ++ + P + + Q D P+ LV+EMMIL
Sbjct: 653 AALARRAYREACGCIEIPLPEAKINVPYSHLDRARPAVTISRISQWDSPSRSLVAEMMIL 712
Query: 388 CGEAIATYGSFNNLALPYRGQPQSNID-VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV 446
GEA+ G+ L LPYR Q + SA A LPEGP R A+ + M +A+ P
Sbjct: 713 AGEAVGAIGAEAALPLPYRSQDSPELPPASALAALPEGPCRGFALKRCMTRSAVG-PSPR 771
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
RH L L YVQFTSPIRRY D++AH+ +KA LRG+ PFS ++E + + R
Sbjct: 772 RHAALALDAYVQFTSPIRRYSDMVAHHNLKAWLRGDPLPFSGNEIESLMAAAGEAGRELG 831
Query: 507 RLSNTSLRYWIIEFLRRQPKERQYRALILRFIKD--RTAALLLVEVGLQAAAWVSVGAQI 564
S YW+ E+LR +Y A+ L + ++ + AA LL GL+ V G
Sbjct: 832 AAERESENYWVAEYLRLN-WGAEYPAMALGWQREEMQLAAFLLQREGLEVVVRVPQGTAF 890
Query: 565 --GDEVEVKVEEAHP 577
GD + E +P
Sbjct: 891 RPGDCCVLAPSEVNP 905
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
LQ G L+E++K+ DR +LAV PDGKKNW DQ G I P+QV FV+PG +
Sbjct: 183 ALQVGALVEYEKN-DRAVLAVLVAPDGKKNWFAVDQTGRRQPITPKQVVFVLPG-SGYRE 240
Query: 169 KDISNFLQKAE 179
D++ F++ AE
Sbjct: 241 GDVAAFVEAAE 251
>gi|299116373|emb|CBN74638.1| COG0557: Exoribonuclease R [Ectocarpus siliculosus]
Length = 820
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/357 (35%), Positives = 203/357 (56%), Gaps = 29/357 (8%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI-KVYIHVADPTKYIEPGSLSDKDAMK 243
R+DLTHLKVYAID ++ +E+DD LS L DG +V++H+AD ++++ GS ++A +
Sbjct: 319 RRDLTHLKVYAIDSEDTNEVDDGLSVEALPDGAGERVWVHIADVSRWVPEGSPLYEEARR 378
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
+ T+++LP PMFP ++A +SLR G C ++++ + L G I + V +++K T
Sbjct: 379 KRTTIYLPEGAEPMFPAEVAHGVLSLRSGHECYSLSMGITLGESGEITDVIVTPALVKVT 438
Query: 304 YMLTYESATELLHLNL---EEEAELKILSEAAALRLQWRLQQGAID--TATLETRIK-VA 357
Y LTY+ ++L + +E EL L E A LR ++R +QG++D L+ +K V
Sbjct: 439 YRLTYDDVEDMLVNGIAGSADEWELGRLDELAQLRYRYRCEQGSVDRFQKGLDHNVKAVE 498
Query: 358 NPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ------PQ 410
+P P + + ED + ++RLV+EMM+L GE + + G + LP+R Q P+
Sbjct: 499 DPSVPGGYAVKVIPEDPSCRSIRLVTEMMVLVGEGMGSVGGEEGIPLPFRHQKAPDSFPE 558
Query: 411 SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLL 470
+++++ LPE R+ K M ++A P H LGL YVQ++SPIRRY+DLL
Sbjct: 559 TDLEL-----LPEKYCRAQGAYKYM-SSATTATTPQPHWGLGLDSYVQWSSPIRRYLDLL 612
Query: 471 AHYQVKACLRGESPPFSA----GQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRR 523
AHYQVK L G+ P Q+E V + R+ + +YW+ E+L +
Sbjct: 613 AHYQVKRWLLGQ-PTLDGSLVMAQVEAGDGAVQTANMVMRKTN----KYWVTEYLSK 664
>gi|412990897|emb|CCO18269.1| ribonuclease II [Bathycoccus prasinos]
Length = 754
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 146/431 (33%), Positives = 226/431 (52%), Gaps = 32/431 (7%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQ--DGRIKVYIHVADPTKYIEPGSLSDKDA 241
+R DL+ L+V+A+D + E+DD +S +++ D ++VYIHVADPT++I S D +A
Sbjct: 313 SRVDLSRLEVFAVDNESTYEIDDGISIEKIEGDDEFVRVYIHVADPTRFIVFDSPLDIEA 372
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVT--------VSVVLHSD-----G 288
KRGT+++LPT + PMFP+ L+ +SLR V N T V++ + +D G
Sbjct: 373 RKRGTTLYLPTESIPMFPKSLSGGKLSLR---VANDETTTRNDNEGVALTVQADISRLNG 429
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTA 348
SI Y + S I +TYE L + +L +L+E A R R +GAI+
Sbjct: 430 SIRSYDIYPSTISGVTRMTYEDVDAHLKDEGRAKNDLHLLNECAVARYHKRENEGAINIL 489
Query: 349 TLETRIKVANPE----DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
E + V++ + D I L D + + LVSEMMIL GE T+G N+LALP
Sbjct: 490 LPELDVFVSSADARGGDVSSEIFLKRRDNSASNI-LVSEMMILAGEIAGTFGVENSLALP 548
Query: 405 YRGQPQSN-IDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
+RGQ + +D + +P+G A+ M A++ P H LGL YVQFTSPI
Sbjct: 549 FRGQGEPRLLDEETWDTIPDGVCAEMAMRSCMTASSQGI-TPRPHHSLGLSAYVQFTSPI 607
Query: 464 RRYMDLLAHYQVKACLRG--ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFL 521
RRY DLLAHYQ+K+ LR S S +LE + S + + +YW+ E+
Sbjct: 608 RRYADLLAHYQIKSYLRSGRHSSEISNEKLELVLSEAGANASVGIKTQREISKYWVTEYF 667
Query: 522 RRQ--PKERQYRALILRFIKDRTAALLLVE-VGLQAAAWV--SVGAQIGDEVEVKVEEAH 576
RQ + Y A +++ ++ AL L+E G + + ++G V++KV+ A+
Sbjct: 668 SRQMGSADNIYEATVVKSMRSDAFALALLEDTGFETPFKLLRENDFKLGTTVKIKVDSAN 727
Query: 577 PRDDIIYLKEV 587
P + ++ +V
Sbjct: 728 PIEQQLFFSQV 738
>gi|88808523|ref|ZP_01124033.1| Exoribonuclease II [Synechococcus sp. WH 7805]
gi|88787511|gb|EAR18668.1| Exoribonuclease II [Synechococcus sp. WH 7805]
Length = 651
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 133/394 (33%), Positives = 195/394 (49%), Gaps = 13/394 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTH ID E ++DDAL RL D +++++IH+ADP + I GS D +A +
Sbjct: 246 ERIDLTHQTCVTIDDAETRDIDDALGLERLADDQLRIWIHIADPGRLITTGSPLDLEARR 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L PMFP L+ E SL+ G+ A + V L G + + S + P
Sbjct: 306 RGSSLYLARGILPMFPSNLSTEVFSLKAGQRNAAWSTWVDLDHTGDVKTSGMCRSWVTPR 365
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE A EL+ EEA+L L A R +WRL++GA+ E RI+ D +
Sbjct: 366 YRLTYEDADELIDFAPPEEADLSNLHALLATRRRWRLERGALLMDLPEGRIRC---RDGQ 422
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAHLP 422
P + + + P+ +V+E MILCG AT G N LALP+R Q P + L
Sbjct: 423 PTVEIT---EPSPSREMVAEAMILCGTVAATKGIENALALPFRSQLPAELPSAAQLEELA 479
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR-- 480
+G VR +AI + + + P H LG+P Y Q TSPIRRY DL+ Q A L
Sbjct: 480 DGAVRFAAIKRCLSRGLMG-TTPAAHFSLGVPAYTQATSPIRRYGDLVVQRQFAAMLSPD 538
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK- 539
G P L+ + + R ++ R+W + ER + LR+++
Sbjct: 539 GHDDPLDTESLQTLLQQIETAVREGIAVTREDQRHWQQVWFEHHSSER-WPVDFLRWLRP 597
Query: 540 -DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKV 572
DR + + ++ L AA G + GD + +KV
Sbjct: 598 QDRLGLVRIEDLALDIAASCPTGCEPGDALVLKV 631
>gi|78212866|ref|YP_381645.1| ribonuclease II [Synechococcus sp. CC9605]
gi|78197325|gb|ABB35090.1| probable ribonuclease II [Synechococcus sp. CC9605]
Length = 676
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/398 (33%), Positives = 214/398 (53%), Gaps = 14/398 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL Y++D E+DDALS R +DG ++IH+ADP++ I+ S D++A +
Sbjct: 279 QRIDLTHLATYSLDDAGTREIDDALSLER-RDGVNWIWIHIADPSRLIDIDSPLDQEARR 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L PM P +LA +SLR G+ C A++ +V L +DG++ E + S I+P
Sbjct: 338 RATSLYLAEGVMPMLPLELAAGPLSLRAGQRCAALSAAVHLDADGAVVEQRIARSWIRPR 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY EL+ L + L LS R++WR +GA+ E R + ++
Sbjct: 398 YGLTYGDGDELIELAPPGDEALSDLSGLLMQRMRWRRSKGAVMFDRPEGRFRRSDGS--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
+ L V D + P+ +VSE M+L G +A++G +NL LP+R QP + + S +P
Sbjct: 455 --LTLQVIDPS-PSRLMVSEAMLLMGAVVASFGQKHNLPLPFRSQPAAELPSSDELDRIP 511
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
EGP R +AI + + + + + + H LGL YVQ TSPIRRY DL+AH Q+ A L
Sbjct: 512 EGPARDAAIKRCL-SRGVQGTRAMPHFSLGLEAYVQATSPIRRYADLIAHRQIIAQLSAL 570
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
P +L + ++ R + ++S R+W + + A+ LR+++ D
Sbjct: 571 E-PMDEERLGEVIDDLDDPLRQSIQISREDQRHWQQVWFAEH-HNTVWTAVFLRWLRPQD 628
Query: 541 RTAALLLVEVGLQAAAWVSVGAQI-GDEVEVKVEEAHP 577
R A + + ++ + +VS GD +E+KV A P
Sbjct: 629 RLALVHVSDLAMDLVGFVSADDPCPGDVLELKVGRADP 666
>gi|148239629|ref|YP_001225016.1| exoribonuclease R/ribonuclease II [Synechococcus sp. WH 7803]
gi|147848168|emb|CAK23719.1| Exoribonuclease R/ribonuclease II [Synechococcus sp. WH 7803]
Length = 649
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 130/393 (33%), Positives = 202/393 (51%), Gaps = 13/393 (3%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHL ID E ++DDAL RL + ++++IH+ADP++ I GS D +A +R
Sbjct: 245 RRDLTHLACVTIDDAETKDIDDALGLERLANDHLRIWIHIADPSRLITAGSPLDLEARRR 304
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+S++L PMFP KL+ E SL+ G+ A + V L + G + + S + P Y
Sbjct: 305 GSSLYLSRGLLPMFPSKLSSEVFSLKAGQRNPAWSTWVDLDASGDVTASGLCRSWVTPRY 364
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ A EL+ EEA+L L + R QWR+Q+GA+ E RI+ D +P
Sbjct: 365 RLTYDDADELIDFAPPEEADLSDLHDLLTTRRQWRVQRGALLMDLPEGRIRC---RDGQP 421
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLPE 423
I + + P+ +V+E MILCG A+ G ++L LP+R Q + + +A L +
Sbjct: 422 TIEIT---EPSPSRDMVAEAMILCGSVAASQGIEHDLPLPFRSQLPAELPSAAQLEGLGD 478
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL--RG 481
G VR +AI + + + P H LGL Y Q TSPIRRY DL+ Q A L
Sbjct: 479 GAVRFAAIKRCLSRGLMG-TTPAAHFSLGLSAYAQATSPIRRYSDLVVQRQFAALLYPHA 537
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK-- 539
P + L+ + ++ R ++ R+W + + R + LR+++
Sbjct: 538 NEEPLNTESLQTLLQQIDTAVREGIAVTREDQRHWQQVWFEQHANAR-WPVDFLRWLRPQ 596
Query: 540 DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKV 572
DR + L E+ L AA G++ GD + ++V
Sbjct: 597 DRLGLVRLEELALDLAATCPAGSEPGDALVLEV 629
>gi|307109243|gb|EFN57481.1| hypothetical protein CHLNCDRAFT_143004 [Chlorella variabilis]
Length = 577
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 141/399 (35%), Positives = 210/399 (52%), Gaps = 32/399 (8%)
Query: 185 RKDLTHL-KVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT V ID E+DD LS RL G +KV++H+ADP++++ PGS +A
Sbjct: 148 RVDLTSTHSVITIDDASTTEIDDGLSLERLPGGGLKVWVHIADPSRWVAPGSALAGEARG 207
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS--IAEYSVDNSIIK 301
RG S++LPT PMFP+ LA SLRQG AV+V V + ++G+ V S+++
Sbjct: 208 RGKSLYLPTGAVPMFPKCLAEGPFSLRQGVPTEAVSVGVEVTAEGAVVPGGVHVVPSLVR 267
Query: 302 PTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
P+ LTY E+L EE E +L L A LR RL GA++ E+ ++V +
Sbjct: 268 PSRRLTYRDVDEMLAACEEEDERDLFELRRVAELRRAHRLCGGAVEIDMPESSVRVEGAD 327
Query: 361 DPEPIINLYVEDQ-ADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAF 418
+P + + EDQ A PA +LV+EMMIL GEA+ G + LPYRGQ + + +
Sbjct: 328 RDDPAVLIEEEDQFASPARQLVAEMMILAGEAVGQLGRELGVPLPYRGQAEPVLPEPEEL 387
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
A LP GP R+ A+ M + P+RH LGL Y DLLAH+Q+KA
Sbjct: 388 AALPPGPCRAVALRSRMTRSVTVAHAPLRHAGLGL----------EAYGDLLAHWQLKAA 437
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRR----QPKERQYRALI 534
LRG+ PP +A +L M R++ +L YW+ E+ R+ P+ + A+
Sbjct: 438 LRGKQPPCTADEL--------MDLRLS-KLEREVESYWVAEYFRQANTSDPRA-TWDAMF 487
Query: 535 LRFIKDRT--AALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
L +++ A +LL +GL+ ++ + G+ V V+
Sbjct: 488 LCWLRQEVGLARVLLGGLGLETVLRINSPVEPGERVYVR 526
>gi|317969854|ref|ZP_07971244.1| ribonuclease II [Synechococcus sp. CB0205]
Length = 597
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 192/372 (51%), Gaps = 16/372 (4%)
Query: 216 GRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVC 275
GR +++IHVADP + I GS D +A KR +S++L PMFP+KL+ SLR G
Sbjct: 234 GRTRIWIHVADPGRLIPAGSPLDLEARKRASSLYLAQGNVPMFPDKLSTGVFSLRAGRRT 293
Query: 276 NAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALR 335
A + L+ DGS+++Y + S +KP Y L+Y+ A EL+ L ++++L L R
Sbjct: 294 AAWSTWAELNEDGSLSDYGMVRSWVKPIYRLSYDDADELIELAPPQDSDLADLEGLLNAR 353
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
+WRL QGA+ E RI+ E + L V + ++ + ++V+E MIL G A
Sbjct: 354 RRWRLSQGALQMDLPEGRIRAR-----EGLAQLEVTEPSN-SRQMVAEAMILAGAVAAQL 407
Query: 396 GSFNNLALPYRGQPQSNIDVSA-FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLP 454
G +ALPYR Q + + A LP+G VR +AI + + + KP H LGLP
Sbjct: 408 GQDRGIALPYRSQLPAELPGQAELDALPDGAVRFAAIKRCLSRGLMGT-KPAAHFSLGLP 466
Query: 455 GYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLR 514
YVQ TSPIRRY DLL Q+ A P S L+ + + V+ R +S R
Sbjct: 467 AYVQATSPIRRYGDLLVQRQLAA-----EEPLSEDALQELVNAVDAAIREGIAISREDQR 521
Query: 515 YWIIEFLRRQPKERQYRALILRFIK--DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKV 572
+W + Q K +Q+RA LR+++ D + + E+ + AA A GD + +++
Sbjct: 522 HWQQVWFEGQ-KGQQWRAQFLRWLRPQDHLGRVRIDELAMDLAAECPSHATPGDALLLRI 580
Query: 573 EEAHPRDDIIYL 584
+ D + L
Sbjct: 581 QSVDSLQDQLRL 592
>gi|291000442|ref|XP_002682788.1| predicted protein [Naegleria gruberi]
gi|284096416|gb|EFC50044.1| predicted protein [Naegleria gruberi]
Length = 975
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 218/441 (49%), Gaps = 42/441 (9%)
Query: 185 RKDLTHLKVYAID-VDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
RKDL HL V+ ID + E+DD +S + +++G +Y+H+AD T+YI+ GS DK+A K
Sbjct: 537 RKDLRHLTVFTIDEYPKTTEVDDGVS-IEVKNGEYYIYVHIADVTRYIDQGSSIDKEAQK 595
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R +SV+LP + M L+ +SL + ++T S ++SDGS++E+ V +I+
Sbjct: 596 RVSSVYLPDIKFSMIAADLSANILSLSDLKENFSLTFSSKINSDGSLSEWDVFPAILGKV 655
Query: 304 YMLTYESATELLHLNLEEEAELKILSE----AAALRLQWRLQQGAIDTATLETRIKVANP 359
+ Y A ++ ++ E E++ E A LR +R+ +GA TL R KV
Sbjct: 656 KKVDYSMADNIIENTVQAEPEVQQAFEHMVKVANLRFAFRMGKGAT-PPTLTPRPKVYVS 714
Query: 360 EDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID---- 414
+ + I ++ E+ P+ RLV E MI E Y +++A+PYRG D
Sbjct: 715 DSEKNIEVSTTFEELVSPSRRLVQEFMIAANEIGGFYAHQHDIAVPYRGTRTVTTDLPPL 774
Query: 415 ---------VSAFAHLPEGP-----VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFT 460
+S +LPE V S+ + I+ + P H +G YVQ T
Sbjct: 775 LSNEEMQKILSLRTNLPEKDVCELVVDSNKKFYPIAGVCIN-QSPKFHQGIGSANYVQVT 833
Query: 461 SPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEF 520
SPIRRY DL+ HYQ+KA +RGE PF+ +++ M + TR L S R+W++++
Sbjct: 834 SPIRRYSDLMVHYQLKAQMRGEKQPFTWDEIQEMIFAIEPTTRAINSLQKKSERFWLLKY 893
Query: 521 ----LRRQPKERQYRALILRFIKDR-----------TAALLLVEVGLQAAAWVSVGAQIG 565
L + +Y+AL+L K+ T+ L L+E + + + G
Sbjct: 894 FEQNLTKSSNLNKYKALVLETRKNSVTSLDPNELPYTSELYLMESAFKTSVKSAQNRAAG 953
Query: 566 DEVEVKVEEAHPRDDIIYLKE 586
+ V V+V P +D I +E
Sbjct: 954 NLVFVRVSSVSPYNDEITFEE 974
>gi|87124492|ref|ZP_01080341.1| probable ribonuclease II [Synechococcus sp. RS9917]
gi|86168064|gb|EAQ69322.1| probable ribonuclease II [Synechococcus sp. RS9917]
Length = 657
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 121/371 (32%), Positives = 192/371 (51%), Gaps = 11/371 (2%)
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
L+ R DG+++++IHVADP + + S D +A +RG+S++L PMFP+ L+
Sbjct: 280 GLALERRPDGKLRIWIHVADPGRLVAAESPLDLEARRRGSSLYLVRGILPMFPDILSTGP 339
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELK 326
SLR G+ A + V L G+I Y + S + P Y L+YE A EL+ EEA+L
Sbjct: 340 FSLRAGQRNPAWSTWVELDDSGAIEAYGIARSWVTPRYRLSYEDADELIDFAPPEEADLA 399
Query: 327 ILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI 386
L++ R QWR+ QGA+ E RI+ + + P I + P+ +V+E MI
Sbjct: 400 ELNDLLERRRQWRVSQGALLMDLPEGRIRCRDDDHPSVAIT-----EPSPSRLMVAEAMI 454
Query: 387 LCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLPEGPVRSSAIVKIMRAAAIDFRKP 445
L G A +G +NLALP+R Q +++ A LP+G VR +AI + + +
Sbjct: 455 LAGAVAARFGVEHNLALPFRSQLPADLPSPAQLDELPDGAVRFAAIKRCL-GRGLMGTTA 513
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIA 505
H LGLP Y Q TSPIRRY DL+ Q++A L G + P L+ + + V+ R
Sbjct: 514 APHFSLGLPAYAQATSPIRRYGDLVVQRQIQAQLSGTT-PLGGDALQELLNSVDSAVREG 572
Query: 506 RRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--DRTAALLLVEVGLQAAAWVSVGAQ 563
+S R+W + E Q++A LR+++ DR + + E+ + AA
Sbjct: 573 IAISREDQRHWQQVWFEAHSSE-QWQADFLRWLRPQDRLGLVRIEELAMDLAAECPQNTH 631
Query: 564 IGDEVEVKVEE 574
G+ + ++V++
Sbjct: 632 PGEALLLRVQQ 642
>gi|254430786|ref|ZP_05044489.1| exoribonuclease, VacB/RNB family protein [Cyanobium sp. PCC 7001]
gi|197625239|gb|EDY37798.1| exoribonuclease, VacB/RNB family protein [Cyanobium sp. PCC 7001]
Length = 654
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 211/404 (52%), Gaps = 12/404 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT L ID + ++DDA+ R DG ++++IH+ADP + + S D +A +
Sbjct: 256 DRLDLTALHCVTIDDADTRDIDDAIGLERCADGLLRLWIHIADPGRLVALDSPLDVEARR 315
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L + T PMFPE LA +SL G A ++ + L +G+I + S ++PT
Sbjct: 316 RGSSLYLASGTLPMFPEALATGPLSLVAGRRNAAWSLGLELDGEGAITATRLARSWVRPT 375
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y L+Y A EL+ L E+ +L L R +WRL +GAI E RI+V D E
Sbjct: 376 YRLSYADADELIDLAPPEDPDLAELHGLLERRRRWRLARGAIQMDQPEGRIRV---RDGE 432
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAHLP 422
P + + + P+ +V+E MIL G A+A +G ++LALPYR Q P S LP
Sbjct: 433 PELEIT---EPSPSRLMVAEAMILAGAAVAAHGQEHHLALPYRSQLPAELPRPSELEALP 489
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR +AI + + P H LGLP YVQ TSPIRRY DL+ Q+ A G
Sbjct: 490 AGPVRHAAIKRCLSRGHTGA-VPSAHFSLGLPAYVQATSPIRRYGDLVVQRQLLAVQEGR 548
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
PP A L+ + + R ++S R+W + R + RQ+ A LR+++ D
Sbjct: 549 -PPLDAEALQALLDQLEDPIRQGLQISREDQRHWQQVWFSRH-RSRQWSAQFLRWLRAQD 606
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYL 584
+ L ++ + AA A+ GD + V+V+ P D + L
Sbjct: 607 GLGLVHLEDLAMDLAAHCPADAEPGDALIVRVQLVDPLRDQLRL 650
>gi|318041406|ref|ZP_07973362.1| ribonuclease II [Synechococcus sp. CB0101]
Length = 652
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/399 (33%), Positives = 208/399 (52%), Gaps = 22/399 (5%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT + ID D+ ++DD L+ R DG ++++IHVADP + + S D +A +
Sbjct: 253 ERLDLTAQRCVTIDDDDTRDIDDGLALERRADGSLRLWIHVADPGRLVAVDSPLDLEARR 312
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L + PMFP L SLR G A + V L +G IA Y + S +KPT
Sbjct: 313 RGSSLYLASGNLPMFPLCLTTGPFSLRAGMRSAAWSTWVDLDHEGDIAAYGIQRSWVKPT 372
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y L+Y A +L+ L EE +L L + R QWR++QGA+ E RI+ D E
Sbjct: 373 YRLSYSDADDLIDLAPPEERDLAELDQLLDRRRQWRVRQGALLMDLPEGRIRS---HDGE 429
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ------PQSNIDVSA 417
P + + + P+ +V+E MIL G A +G + LALP+R Q P++ +D
Sbjct: 430 PTLEI---SEPSPSRAMVAEAMILAGAVAARFGVEHGLALPFRSQLPADLPPKAELDA-- 484
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
LP+G VR +AI + + + + H LGLP Y Q TSPIRRY DL+ Q++A
Sbjct: 485 ---LPDGAVRFAAIKRCLSRGLMGTQASP-HFSLGLPAYAQATSPIRRYGDLVVQRQIQA 540
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
L G S P S L+ + + + R +S R+W + K Q+RA LR+
Sbjct: 541 QLSGAS-PLSEDDLQELLNSFDGAVREGIGISREDQRHWQQVWFEAH-KTSQWRADFLRW 598
Query: 538 IK--DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
++ DR + + ++ + AA AQ G+ + ++V++
Sbjct: 599 LRPQDRLGLVRIDDLAIDLAAECPQNAQPGEALLLRVQQ 637
>gi|427701858|ref|YP_007045080.1| exoribonuclease R [Cyanobium gracile PCC 6307]
gi|427345026|gb|AFY27739.1| exoribonuclease R [Cyanobium gracile PCC 6307]
Length = 679
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 209/406 (51%), Gaps = 20/406 (4%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DLT L ID + ++DD LS DG +++IH+ADP + + P S DK+A +
Sbjct: 281 RRRDLTGLHTVTIDDADTRDIDDGLSLEHGPDGAPRLWIHIADPGRLVAPESPLDKEARR 340
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R +S++L PMFPE L+ MSLR GE A+++ V L DG++A + +++S ++P
Sbjct: 341 RASSLYLARGPLPMFPEVLSTGPMSLRMGERSAALSLWVELTEDGAVAGFGLESSWVRPA 400
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV----ANP 359
Y L+Y A EL+ L +E L+ + R +WRL +GA+D E RI+ A
Sbjct: 401 YRLSYADADELIELAPPQERYLEEIHALMERRRRWRLARGALDLDQPEGRIRCDELGAQL 460
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-F 418
E EP PA LV+E MIL G IA G LALPYR Q + + A
Sbjct: 461 EITEP----------SPARTLVAEAMILAGAVIAGLGQEQGLALPYRSQLAAELPPEAEL 510
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
A LP GPVR +AI + + + P H LGLP YVQ TSPIRRY DLL Q+ A
Sbjct: 511 AALPAGPVRHAAIKRCLSRGLLGT-SPAPHFSLGLPCYVQATSPIRRYNDLLVQRQLLAH 569
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
+G+ P +L + + R +++ R+W + Q + Q+ + LR++
Sbjct: 570 QQGQ-PVLEEAELGALLGELEGAIRQGLQIAREDQRHWQQVWFEAQ-DQHQWPGVFLRWL 627
Query: 539 K--DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDII 582
+ DR + L ++ + AA GD + V++++ D++
Sbjct: 628 RPQDRLGLVHLPDLAMDLAAECHGDPAPGDALLVRLQQVDSLRDLL 673
>gi|352093900|ref|ZP_08955071.1| ribonuclease II [Synechococcus sp. WH 8016]
gi|351680240|gb|EHA63372.1| ribonuclease II [Synechococcus sp. WH 8016]
Length = 700
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/407 (30%), Positives = 209/407 (51%), Gaps = 14/407 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL H + ID ++ ++DD ++ R DG +V+IH+ADP + IE GS D +A +
Sbjct: 297 ERIDLCHQRCVTIDDEDTRDIDDGIALERCDDGSQRVWIHIADPGRLIEAGSALDLEARR 356
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L PMFPE L+ SLR + A ++ L SDG + ++ + S ++PT
Sbjct: 357 RGSSLYLAKGNLPMFPECLSTGPFSLRARKRTAAWSIWAELSSDGELGDHGIQRSWVQPT 416
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y L+YE A EL+ L E+ +L L + R R++ GA+ E RI+ D +
Sbjct: 417 YRLSYEDADELIELAPPEDTDLAELDALLSRRRDCRVRHGALIMDLPEGRIRC---RDGQ 473
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLP 422
P + + + + ++V+E MIL G +A + N+LALP+R Q +++ S+ LP
Sbjct: 474 PSLEV---SEPGRSRQMVAEAMILAGAVVARFAEINDLALPFRSQLTADLPPSSELDALP 530
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
EG VR +AI + + + I +P H LGL Y Q TSPIRRY DL+ Q+ A L +
Sbjct: 531 EGAVRFAAIKRCL-SRGIMGTQPAAHFSLGLASYAQATSPIRRYGDLVVQRQLHALLSSK 589
Query: 483 SP---PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK 539
P L+ + + + R +S R+W + KE Q+ A LR+++
Sbjct: 590 ESGEEPLDRDDLQVLLNDFDAAVREGIGISREDQRHWQQVWFEHHGKE-QWAAQFLRWLR 648
Query: 540 --DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYL 584
D+ + + ++ + AA ++ G+ + + V+ D + L
Sbjct: 649 PQDQLGLVRIDDLAMDVAAECPRDSEPGEGLLITVQHVDSARDQLRL 695
>gi|452820992|gb|EME28028.1| exoribonuclease II [Galdieria sulphuraria]
Length = 769
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/421 (31%), Positives = 207/421 (49%), Gaps = 15/421 (3%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
++N +R +L L Y+ID E E+DDA+ RL V++HVAD + Y+ L
Sbjct: 347 DNNSSDRIELKQLPCYSIDDSETIEIDDAVGLDRLDSDY--VWVHVADASNYVSSDDLLF 404
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCN-AVTVSVVLHSDGSIAEYSVDN 297
+A++RG+S++LPT MFP +A +SL N A++ + DG + + +
Sbjct: 405 DEALRRGSSIYLPTEKIGMFPMNVAELLLSLGSRYGSNYALSFGFRILPDGKLQDIRICK 464
Query: 298 SIIKPTYMLTYESATELLHLNLEE----EAE---LKILSEAAALRLQWRLQQGAIDTATL 350
SIIK + Y +A ++ + + EA+ L+ L + A R +RL GA++
Sbjct: 465 SIIKAPIRIDYPTAESVIAGDTVDPCLMEADIICLQRLHKLAERRRTYRLANGALEFNVN 524
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E +KV + +P + LV EMM+ GEA A Y LP+RGQ +
Sbjct: 525 EAEVKVTFDDGEQPSFQFQSHTSERKSSLLVKEMMLAAGEAAALYAQQKGWILPFRGQEK 584
Query: 411 SNIDV-SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDL 469
N+ S +PEG R++ ++K M+ + I + P H LGL Y Q TSPIRR DL
Sbjct: 585 VNLPTDSELNVIPEGVARANKLLKFMKPSFISYH-PTAHSSLGLSCYAQVTSPIRRATDL 643
Query: 470 LAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQ 529
L HYQ+ L + P S +L + + + A+ + S++YW +E+LR +
Sbjct: 644 LGHYQLSNYLAVDMPLMSVEELSSHVKLAHEGAKEAKVVKKRSVKYWCLEYLRMNGLRKN 703
Query: 530 YRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQI---GDEVEVKVEEAHPRDDIIYLKE 586
Y A ++ +IK LLV++ ++ + G +V VKV + HPR II L
Sbjct: 704 YPATVVSWIKSEEPKRLLVQIDKIPYYFMMDSDHVYYPGQQVVVKVTDIHPRMGIIRLNI 763
Query: 587 V 587
V
Sbjct: 764 V 764
>gi|113952971|ref|YP_730543.1| exoribonuclease, VacB/RNB family protein [Synechococcus sp. CC9311]
gi|113880322|gb|ABI45280.1| exoribonuclease, VacB/RNB family protein [Synechococcus sp. CC9311]
Length = 645
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 207/392 (52%), Gaps = 12/392 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL H + ID ++ ++DD ++ R +DG +++IH+ADP + IE S D +A +
Sbjct: 246 ERIDLCHQRCVTIDDEDTRDIDDGIALERREDGSQRLWIHIADPGRLIESDSALDLEARR 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L PMFPE L+ SLR A ++ L S+G + ++ + S ++PT
Sbjct: 306 RGSSLYLAKGNLPMFPESLSTGPFSLRARTRTAAWSIWAELTSEGELGDHGIHRSWVQPT 365
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y L+Y+ A EL+ L E+ +L L + R +R++ GA+ E RI+ D +
Sbjct: 366 YRLSYDDADELIELAPPEDTDLAELDALLSRRRDFRVRNGALLMDLPEGRIRC---RDGQ 422
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLP 422
P + + + A ++V+E MIL G +A + ++LALP+R Q +++ S+ LP
Sbjct: 423 PSLEV---SEPGRARQMVAEAMILAGAVVARFAEVHDLALPFRSQLPADLPPSSELEALP 479
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+G VR +AI + + + +P H LGL Y Q TSPIRRY DL+ Q++A L GE
Sbjct: 480 DGAVRFAAIKRCLSRGLMGT-QPAAHFSLGLASYAQATSPIRRYGDLVVQRQLQAQLSGE 538
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
P L+ + S + R +S R+W + K+ ++ A LR+++ D
Sbjct: 539 D-PLDRDVLQTLISDFDAAVREGIGISREDQRHWQQVWFETHRKQ-EWAAQFLRWLRPQD 596
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKV 572
+ + + ++ + AA A+ G+ + V+V
Sbjct: 597 QLGLVRIDDLAMDVAAECPRDAEPGESMLVRV 628
>gi|159465501|ref|XP_001690961.1| 3'-5' exoribonuclease II [Chlamydomonas reinhardtii]
gi|158279647|gb|EDP05407.1| 3'-5' exoribonuclease II [Chlamydomonas reinhardtii]
Length = 699
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 166/366 (45%), Gaps = 85/366 (23%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DLTHL+ + ID E+DD LS RL G +++IHVADPT++I P + D +
Sbjct: 365 NREDLTHLRCFTIDDAATTEVDDGLSLERLAGGGTRIWIHVADPTRWISPDTQLDLAGRQ 424
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP + PMFP LA SLR G+VC+A++V V L DGS+A V S + +
Sbjct: 425 RGRTLYLPWGSVPMFPRALAEGPFSLRAGQVCDALSVGVELRPDGSVASARVAPSRVLVS 484
Query: 304 YMLTYE----------------------------SATELLHLNLEEEAELKILSEAAALR 335
+ LTY+ A L+ E A+L+ L AA LR
Sbjct: 485 HKLTYDGADAALGGAEAAGGAAAAGGAAAAGGAGGAGVAGGLDGEALADLQELRRAATLR 544
Query: 336 LQWRLQQGAIDTATLETRIKVANPED---PEPIINLYVEDQADPAMR-LVSEMMILCGEA 391
Q+R +G I+ E +I V PE P + + Q + A R LV+EMMIL GEA
Sbjct: 545 RQYREGRGCIEIPLPEAKIHV-PPEQLDRARPAVTVTRISQWESASRSLVAEMMILTGEA 603
Query: 392 IATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVL 451
+ T RH L
Sbjct: 604 VGT----------------------------------------------------RHAAL 611
Query: 452 GLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNT 511
L YVQFTSPIRRY D+LAHY +KA LRGE PFS Q+E + R
Sbjct: 612 ALDAYVQFTSPIRRYSDMLAHYNLKAWLRGEPLPFSGRQIEAVMEAAAEAGRELGGAERE 671
Query: 512 SLRYWI 517
+ YW+
Sbjct: 672 AESYWV 677
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 12/52 (23%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVP 161
LQ G L+EF+K+ DR +L + PDGKKNW V P+QV+ ++P
Sbjct: 159 LQAGCLVEFEKN-DRGVLGLVTGPDGKKNWFV-----------PKQVSLLLP 198
>gi|72382181|ref|YP_291536.1| exoribonuclease R/ribonuclease II [Prochlorococcus marinus str.
NATL2A]
gi|72002031|gb|AAZ57833.1| exoribonuclease R/ribonuclease II [Prochlorococcus marinus str.
NATL2A]
Length = 424
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 198/402 (49%), Gaps = 18/402 (4%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
KDLTHLK Y ID + E+DDA+S ++ G+ K++IH+A P YIE S D+ A K
Sbjct: 28 KDLTHLKTYTIDDSKTVEIDDAISLEQVS-GQNKLWIHIASPASYIEYQSGIDEKARKLV 86
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++V+L TY M P+ L SL E ++++ V+L+ DGSI+ + S+I+ Y
Sbjct: 87 STVYLSNNTYYMLPKALINNVFSLSDKEKRESLSLGVILNDDGSISSTEIVQSLIQVDYR 146
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
L + A EL+ +EE +L ++S R WR G+I+ LE+ K+ ED P
Sbjct: 147 LDFIEADELIDYAPKEEIDLSLISTILESRKSWRKNLGSIE--ILESYGKIV-VEDKIPN 203
Query: 366 INLYVEDQADPAM--RLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I + DP + +L+SE MIL G+ I+ + N + +PYR Q +S+ + L +
Sbjct: 204 IKI-----IDPTLSRQLISEAMILYGDIISNFTKLNKIPVPYRVQERSDKVSNDNIQLSD 258
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
+ + ++K P++H L L Y+ TSPIRRY DLL HYQ+ L +
Sbjct: 259 NKILYNFLLKKTMGKTYYSINPMQHDSLALTSYLHATSPIRRYADLLVHYQLNRFLNNK- 317
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--DR 541
S ++ + +N+Q R +YW+ ++ +Y ++L +I
Sbjct: 318 VLISKDDVQQIIHEINIQGRQNIMRFREDQKYWLGKWFENNTF-NEYSVILLNWINRYKN 376
Query: 542 TAALLLVEVGLQAAAWV--SVGAQIGDEVEVKVEEAHPRDDI 581
T L V+ + + + IGD VK H +D+
Sbjct: 377 TCLLYFVDYNFSTISNLHSKLNINIGDNFNVK-NTNHDNNDM 417
>gi|124025721|ref|YP_001014837.1| ribonuclease II [Prochlorococcus marinus str. NATL1A]
gi|123960789|gb|ABM75572.1| probable ribonuclease II [Prochlorococcus marinus str. NATL1A]
Length = 424
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 126/407 (30%), Positives = 200/407 (49%), Gaps = 20/407 (4%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
KDL+HLK Y ID + E+DDA+S ++ G+ K++IH+A P YIE S D+ A K
Sbjct: 28 KDLSHLKTYTIDDSKTVEIDDAISLEQVS-GQNKLWIHIASPASYIEYQSGIDEKARKLV 86
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++V+L T TY M PE L SL E ++++ V+L+ DG+I+ + S+I+ Y
Sbjct: 87 STVYLSTNTYYMLPEALINNVFSLSDKEKRESLSLGVILNDDGTISSTEIVQSLIQVDYR 146
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
L + A EL+ +EE +L ++S R WR G+I+ LE+ K+ +D P
Sbjct: 147 LDFTEADELIDYAPKEEIDLSLISTILESRKNWRKNLGSIE--ILESYGKIV-VDDKIPN 203
Query: 366 INLYVEDQADPAM--RLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I + DP + +L+SE MIL G+ I+ + N + +PYR Q +S+ L +
Sbjct: 204 IKI-----IDPTLSRQLISEAMILYGDIISNFTKLNKIPVPYRVQQRSDKVSRDNIQLSD 258
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
+ + ++K P++H L L Y+ TSPIRRY DLL HYQ+ L +
Sbjct: 259 NKILYNFLLKKTMGKTYYSINPMQHDSLALTSYLHATSPIRRYADLLVHYQLNRFLNNK- 317
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWI-IEFLRRQPKERQYRALILRFIKDRT 542
S ++ + +N Q R +YW+ I F E Y ++L +I
Sbjct: 318 VLISKDDVQQIIHEINNQGRQNIMRFREDQKYWLGIWFENNTFNE--YSVILLNWINRYK 375
Query: 543 AALLLVEVGLQAAAWVSVGAQ----IGDEVEVKVEEAHPRDDIIYLK 585
LL V + ++ ++ IGD VK H +D+ Y +
Sbjct: 376 NICLLYFVDYNFSTISNLHSKLNINIGDNFNVK-NTNHDNNDMNYFE 421
>gi|159903437|ref|YP_001550781.1| ribonuclease II [Prochlorococcus marinus str. MIT 9211]
gi|159888613|gb|ABX08827.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9211]
Length = 427
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 158/306 (51%), Gaps = 26/306 (8%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
KDLTHLK Y ID ++ E+DD +S L D K+++H+A P +Y+ D +A +
Sbjct: 30 KDLTHLKTYTIDDIDSAEIDDGVSIEYL-DNSTKIWVHIASPAEYLSFEDPIDIEASLKA 88
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
+ +LP + M P L + +SL+ G + A++VS ++S G I ++ +IIKPT
Sbjct: 89 ATCYLPESPEYMLPNDLVTKLLSLKPGRISAALSVSAEINSAGEIVSSNLYRTIIKPTIA 148
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
LTYE A ++L L EE EL LS R +R+ +G+I N E+ E I
Sbjct: 149 LTYEDADDILDLQPFEEKELIDLSILMGNRRSYRVSKGSI------------NIEEEEGI 196
Query: 366 INLYVEDQ--------ADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-- 415
Y +D +LVSE MIL G +A + N + +P+R Q Q NI +
Sbjct: 197 --FYFQDNVIKHKIKDVTRLRKLVSESMILFGYILADFSKTNKICIPFRVQNQQNISINT 254
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
S + + + + I + + I P H LGLP YVQ TSP+RRY+DLL HYQ+
Sbjct: 255 SKANNYIDKHICNFLIKNQLSKSYISL-TPEAHTSLGLPAYVQATSPLRRYIDLLTHYQI 313
Query: 476 KACLRG 481
L+G
Sbjct: 314 LNYLKG 319
>gi|328953450|ref|YP_004370784.1| ribonuclease II [Desulfobacca acetoxidans DSM 11109]
gi|328453774|gb|AEB09603.1| ribonuclease II [Desulfobacca acetoxidans DSM 11109]
Length = 663
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 207/405 (51%), Gaps = 26/405 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L+++ ID + + DDALS ++ +G ++ IH+ D + YI G+ D+ A++R
Sbjct: 273 RVDLTGLQLFTIDGERTRDFDDALSLEKIPEG-WRLGIHITDVSTYIPLGTPLDQAALER 331
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS++LP PM PE L+ +SL AV+ V L ++G I YS+ S+++ +
Sbjct: 332 GTSLYLPDRRIPMLPEALSENTLSLLAQHPRRAVSFLVNLTAEGEIQNYSILLSMVQVSK 391
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
TY LL N E A L L+ A LR + RL QG + + I D
Sbjct: 392 RFTYHEVDYLLAQN-ERLAALHRLT--ACLR-ERRLSQGGVQLQFPDVTILT----DASG 443
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQS---NIDVSAFA 419
+ + +ED P+ LVSE MIL A Y + + + YR Q P+ ++ +
Sbjct: 444 EVRVEIEDTETPSHELVSEAMILANYLGAQYLAERKVPVLYRSQAPPREELEKVETGSLF 503
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
L + R S ++ +D +P H LGLP Y +SPIRRY+DL+ H Q+ A L
Sbjct: 504 QLWQNRRRLSRVL-------LDL-EPQPHWGLGLPVYTTISSPIRRYLDLIIHRQLFAAL 555
Query: 480 RGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK 539
+ P++ LEG+ +++ R A L LRYW+++FL + ++ + ALIL
Sbjct: 556 CNQPTPYTREALEGLLTLLEPTLRRAALLKTRRLRYWLLKFLSQHVGQK-FSALILEKHP 614
Query: 540 DRTAALLLVEVGLQAAAWVSVGAQI--GDEVEVKVEEAHPRDDII 582
+R LL +++ L++ G Q G+ + +++ P++D++
Sbjct: 615 NRY-RLLFLDILLESEMPAPSGHQFQPGETIFARIDRVVPQEDVL 658
>gi|301063080|ref|ZP_07203641.1| RNB-like protein [delta proteobacterium NaphS2]
gi|300442800|gb|EFK07004.1| RNB-like protein [delta proteobacterium NaphS2]
Length = 660
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 34/414 (8%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL L V ID + + DDA+S + + DG +++ +H+AD +E G+ D A +R
Sbjct: 269 REDLRSLPVVTIDGPKTRDFDDAIS-LEMVDGEMRIGVHIADVAAVVEEGNPIDAAAKER 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIKP 302
+S++LP PM P+ L+ + +SL+ E C+ +S++ + DG + Y SII+
Sbjct: 328 ASSLYLPGRQIPMIPKDLSQDLLSLK--EACDRPAISLLARFNQDGLLLRYRFTTSIIRV 385
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
LTY+ E NL +++ + L A + Q R+ +GA++ + E + D
Sbjct: 386 QRRLTYQEVNE----NLLKQSRFQNLHRLAEILRQERMDRGAMNLSLPELEVD----RDA 437
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN----IDVSAF 418
+ + L + Q P+ +++E MIL + A + NN+ + +RGQ Q +D +
Sbjct: 438 DGTLKLELVPQDSPSRMIIAEFMILYNQLAARFCLQNNIPVLFRGQTQPTEKLPLDEKGY 497
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
+ R + ++I P H LG+ Y Q TSPIRRY+DL+ Q+ +
Sbjct: 498 IYYVFQQRRKLSPLQIS-------THPKPHSGLGVELYTQATSPIRRYLDLVVQRQLTSF 550
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
L + P +S LE + V + R+ LRYWI+++L + R +AL+L +
Sbjct: 551 LAEDIPLYSEESLEEVRMSVEPLIKTLGRIQRNRLRYWILKYLGIN-RGRTLKALVLDEL 609
Query: 539 KDR-----TAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587
K++ T L++ ++ Q S G E+EVKV+ A P DD I L+ V
Sbjct: 610 KNKYRIVLTDFLMVTDLKRQDGIIFSRGQ----EIEVKVKAADPWDDTITLEYV 659
>gi|123966182|ref|YP_001011263.1| ribonuclease II [Prochlorococcus marinus str. MIT 9515]
gi|123200548|gb|ABM72156.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9515]
Length = 394
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/396 (28%), Positives = 193/396 (48%), Gaps = 20/396 (5%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLT+LK + ID + E+DDA S + + K++IH+++P K S D +A +
Sbjct: 2 RDLTNLKTFIIDSENPKEIDDAFSLELIDGSKKKLWIHISNPCKLFSTDSKIDLEAKSKS 61
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
+S++L PM P ++ +E +L Q ++ ++ S+ + +GSI EY + + I P Y
Sbjct: 62 SSLYLIDQYIPMLPSEI-IENANLNQNKLSETISASITFNENGSINEYEMLEAKIIPKYQ 120
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
LTYE A E++ L +EE EL + L++R+ QGAI +I + D +
Sbjct: 121 LTYEDAEEIIELEPKEEFELIEIKNLLLKSLKYRITQGAIIFDMPSNKIDII---DGNVV 177
Query: 366 I-NLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLPE 423
I N+Y + + +VSE MIL G + + NN+ PYR Q + N DVS A
Sbjct: 178 INNIY----KNVSQTIVSESMILMGYVTSLFLFKNNIVTPYRTQ-KINCDVSEILAKYKN 232
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
++ S + + M + I K +H LGL Y Q TSP+RRY+DL+ QV + +
Sbjct: 233 SDIKFSILKQFMGKSYIT-TKANKHESLGLKMYTQCTSPLRRYLDLIVQRQVFNYITNK- 290
Query: 484 PPFSAGQLEGMASIVNM-QTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF--IKD 540
+ ++ + + + Q I N L+Y I F+ + Y+ + +++ IK
Sbjct: 291 KELNINKINEIIDLTKIKQLEINNIYKNNKLKYLNIFFINEN--KSSYKIIFIKWINIKK 348
Query: 541 RTAALLLVEVGLQ--AAAWVSVGAQIGDEVEVKVEE 574
A + E L+ ++S+ +VK E
Sbjct: 349 SIALVYFQEYSLELLIILYISIETYTNKIYKVKYNE 384
>gi|33861425|ref|NP_892986.1| ribonuclease II [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33634002|emb|CAE19327.1| probable ribonuclease II [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 394
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 183/366 (50%), Gaps = 18/366 (4%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLT+LK + ID + E+DDA S + + K++IH+++P K S D DA +
Sbjct: 2 RDLTNLKTFIIDSKDPKEVDDAFSLELFEGNKKKLWIHISNPCKLFLTDSKIDIDARSKS 61
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
+S++L PM P ++ +E +L Q ++ + ++ S++ + DGSI +Y + + IKP Y
Sbjct: 62 SSLYLINQYIPMLPTEI-IEKANLNQNKISDTISASIIFNDDGSINKYEIVEAKIKPKYQ 120
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAI--DTATLETRIKVANPEDPE 363
L YE A E++ L +EE E+ + + +R +QGAI DT + IK N E
Sbjct: 121 LLYEDAEEIIELEPKEEFEIVEIKNLLLNSINYRKKQGAIIFDTPGYKINIKNGNVE--- 177
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLP 422
IIN+ Q + +VSE MIL G + Y NN+A PYR + N D
Sbjct: 178 -IINI----QKSISHSIVSESMILMGYVTSLYLFENNIATPYRTH-KINCDAEEILERYK 231
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ ++ S + + M + I K +H LGL Y Q TSP+RRY+DL+ QV +
Sbjct: 232 DSDIKYSILKQYMGKSYIT-TKANKHESLGLLKYTQCTSPLRRYLDLIVQRQVFNNINN- 289
Query: 483 SPPFSAGQLEGMASIVNM-QTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
S ++ + I + Q N L+Y I F + + K ++ + +++I ++
Sbjct: 290 IERLSHNKINELIDITKIKQLENNNIYKNDKLKYLNI-FFKNEIK-TSHKIIFIKWINNK 347
Query: 542 TAALLL 547
L+
Sbjct: 348 KGIALV 353
>gi|414871490|tpg|DAA50047.1| TPA: hypothetical protein ZEAMMB73_947913 [Zea mays]
Length = 671
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 92/117 (78%), Gaps = 1/117 (0%)
Query: 470 LAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQ 529
+A +VKA LRG+SPP+SAG LEGM I NM ++ARRL + SLRYW++E+LRRQPK R+
Sbjct: 39 VAALKVKAFLRGDSPPYSAGDLEGMTFIANMHVKVARRLHSNSLRYWLLEYLRRQPKGRK 98
Query: 530 YRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586
YRALIL+F+KDR ALLLVEVG+Q +S G ++GD+V V VE AHPRDDI+ + E
Sbjct: 99 YRALILKFVKDRMGALLLVEVGMQVTTTISRG-KVGDQVSVTVEIAHPRDDILSVGE 154
>gi|116748174|ref|YP_844861.1| exoribonuclease II [Syntrophobacter fumaroxidans MPOB]
gi|116697238|gb|ABK16426.1| Exoribonuclease II [Syntrophobacter fumaroxidans MPOB]
Length = 680
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 128/405 (31%), Positives = 204/405 (50%), Gaps = 16/405 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL HL +D + DDALS L R +V IH+AD +++ G + D++A +
Sbjct: 283 QRRDLRHLDCLTVDSALTRDYDDALSFRALDGNRFEVGIHIADAAEFVLKGDVLDREAER 342
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LP A M P L+ + SL+ GE A++ V+H DG+IA + +S I+
Sbjct: 343 RATSIYLPDARISMLPVPLSEDLCSLKAGEDRPALSFLFVVHGDGTIAGSEIVSSTIRVA 402
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTYE E + L+ + A L L A LR RL +GA E ++ V +
Sbjct: 403 EQLTYEEVNERIRLD-DSPAALSAL--AMKLR-NARLDRGASILPLPEIQVYV----NSA 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+I + ++ P+ +VSE MI A A + + +L +RGQ + + F
Sbjct: 455 GMIQVSRYEKETPSQIMVSEWMIAANAAAAAFLAERDLPSVFRGQGECKQETD-FTQSEH 513
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
R ++ A +D R +H L L Y TSPIRRY DL+ Q+K L+G
Sbjct: 514 ELFRIYRQRRLYARAELDTRSK-QHCSLALEHYTTVTSPIRRYTDLVVQRQIKQALQGGP 572
Query: 484 PPFSAGQLEGMAS-IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
P + +L G+ + + +Q+RIA + RYWI+++L Q ALIL +R
Sbjct: 573 PLYDEDELRGLITRLTALQSRIA-FIQRKWTRYWILKYL-EQEDIHSLNALILE-QNERY 629
Query: 543 AALLLVEVGLQAAAWV--SVGAQIGDEVEVKVEEAHPRDDIIYLK 585
+ LLL + ++ A + +V Q G+ V VK++ +PR+DI+ ++
Sbjct: 630 SHLLLPDFLIETNAHLPENVKFQPGEMVRVKIDRLNPREDILRVQ 674
>gi|428170949|gb|EKX39870.1| hypothetical protein GUITHDRAFT_114119 [Guillardia theta CCMP2712]
Length = 791
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 205/425 (48%), Gaps = 36/425 (8%)
Query: 195 AIDVDEADE---LDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLP 251
A VD++ E +DDA+ +G V IHVADP + + DK A++R ++V+LP
Sbjct: 371 AFAVDDSTENMDIDDAVGLQYEGEGEW-VLIHVADPARLCLQDTDLDKLALERASTVYLP 429
Query: 252 TATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESA 311
PM P+ L SL + + +T +V L G I EY + S + TY
Sbjct: 430 ETRIPMLPQTLT-RSASLAEQRDNDGLTFAVRLGHSGDIEEYRIVPSRVINVKKATYSQV 488
Query: 312 TELLHLNLE---EEAE-------------LKILSEAAALRLQWRLQQGAIDTATLETRI- 354
ELL N E EE E L+ L A R+ +R+ QGA+ T + ++
Sbjct: 489 DELLTWNPEAALEEREGRGDAEQVKSSFILQRLMTLAKRRMSFRMLQGALSTQIPKAQVT 548
Query: 355 ---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQ 410
++ N E + + + + Q P+ +++E M+L GE A + + YR Q P
Sbjct: 549 VWDEIVNGEKRKEV-KVEISSQT-PSRMMIAEFMLLAGEVAARFAHERGIPFVYRTQLPV 606
Query: 411 SNI-DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDL 469
+ D H R+ V +M+ A ++ P RH LGL Y Q TSPIRRYMDL
Sbjct: 607 LKVPDFPDLDHFRNEACRNFQQVLMMKPA-VNLVMPARHNGLGLSLYSQITSPIRRYMDL 665
Query: 470 LAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQ 529
L H Q++A L G +P +S +L+ + + ++ + RL +S R+WI+E+LRR+ +
Sbjct: 666 LLHRQLRASLLGSAPAYSTDRLQHLITKLDRKVAAISRLQRSSERFWILEYLRRKGPDII 725
Query: 530 YRALILRFIKD----RTAALLLVEVG-LQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYL 584
+LR ++LL E+G ++ ++G +V V+V+E +P I L
Sbjct: 726 LSGTVLRSYNPAGLVSQVSILLDELGHIETLRVADKAPKVGAKVNVQVKECNPVIGTIKL 785
Query: 585 KEVVR 589
E+VR
Sbjct: 786 -ELVR 789
>gi|51245540|ref|YP_065424.1| ribonuclease R [Desulfotalea psychrophila LSv54]
gi|50876577|emb|CAG36417.1| related to ribonuclease R [Desulfotalea psychrophila LSv54]
Length = 590
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 203/435 (46%), Gaps = 65/435 (14%)
Query: 175 LQKAEDNLLN---RKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-IKVYIHVADPTKY 230
LQ D L + R D THLK ID + DDAL+ + DG V +H++D Y
Sbjct: 190 LQTDMDKLFDDPARIDYTHLKPITIDGPTTQDFDDALTIEK--DGENYLVGVHISDVAHY 247
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+ PG ++AM+RGTS++ P PM P L+ SL QGE+ A++ ++L + +
Sbjct: 248 VRPGDPLFQEAMQRGTSIYFPEGQIPMLPRHLSQGICSLIQGEIRAALSFMILLSPEAEV 307
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+ SIIK LTYE A + L+++ E+K+L++ + RL+Q ID L
Sbjct: 308 LRVRIRPSIIKVARRLTYEEADSM----LKDDNEIKMLNKVSQ-----RLRQRRIDNGAL 358
Query: 351 ETRIKVANPEDPEPIINLYVEDQAD----------PAMRLVSEMMILCGEAIATYGSFNN 400
P P +N+++++Q PA LVSEMMIL A Y +
Sbjct: 359 LL---------PFPDVNIFIDNQGKVHVQLAKSNTPARVLVSEMMILANSESARYVADRM 409
Query: 401 LALPYRGQPQ------SNIDVSAFAH------LPEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+ YR QP+ D F + LP G + S + K H
Sbjct: 410 VPGIYRSQPELKNRIVHGTDDDLFQNTKQRKQLPRGEL--STVAK-------------SH 454
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRL 508
LG+ Y TSPIRR +DL+ +Q+ + +R + P F+ ++++ A +
Sbjct: 455 SGLGVSQYTTITSPIRRLLDLVMQHQLHSIVRRQEPRFTEDMCSDFTAVMSRTLSRANNV 514
Query: 509 SNTSLRYWIIEFLRRQPKERQY-RALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDE 567
+ RYW++ +L + ++ QY AL+++ RT LLL ++ L + G G
Sbjct: 515 RHQRHRYWLLCYL--EERKGQYLEALVIQAGPKRT-NLLLTDILLDVELPATGGISPGQR 571
Query: 568 VEVKVEEAHPRDDII 582
V+++V +A D+++
Sbjct: 572 VKIRVAKADALDNVL 586
>gi|33240419|ref|NP_875361.1| exoribonuclease R [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33237946|gb|AAQ00014.1| Exoribonuclease R/ribonuclease II [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 432
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 199/402 (49%), Gaps = 15/402 (3%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
KD+T+LK Y ID E+DDA+S + D + ++IH+A+P + I S ++AM R
Sbjct: 33 KDITNLKTYTIDDPNTIEIDDAISLEKRGD-KCFLWIHIANPAETISLNSALAQEAMIRS 91
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++L + MFP++L E +SL QG+ A+++ + L G I +S++ + IKP Y
Sbjct: 92 STIYLAESISYMFPKELIREKISLVQGKESLAISLKLELSDKGDINSFSIERTKIKPDYK 151
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
L+YE A E+L +EE EL I R++QGAI E I + I
Sbjct: 152 LSYEEANEILDYQPKEETELIIFYNLINQHYNNRIKQGAIIIEESEGIIFKKDNYYQHKI 211
Query: 366 INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAHLPEG 424
+ P+ RL+SE MI+ GE IA Y + + YR Q P + +D+
Sbjct: 212 ------RKMSPSRRLISESMIIYGELIAEYCFSKKIVIFYRNQSPATLVDIKKLKFFNNN 265
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
V++ + + + I+ KP +H L L Y Q TSP+RRY D + +Q+ + +
Sbjct: 266 HVKNYILKSSLGKSNIEI-KPKKHYSLALNKYSQATSPLRRYCDFINQHQLLSYFNNKKQ 324
Query: 485 PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI--KDRT 542
L + + QT+ +L+ + R I+ +L K++++ + +R++ K++
Sbjct: 325 LSEVEMLSILDKVKLSQTQ-NIQLTRANKRNSILSYL-EHTKKKKWNVIFMRWMVKKEKL 382
Query: 543 AALLLVEVGLQAAAWVSVGAQ--IGDEVEVKVEEAHPRDDII 582
A L ++ L ++ Q +G E + +++ DII
Sbjct: 383 ALLYFSDIYLDIVCSLNGYDQDLLGYEFIIHLDQLDSGLDII 424
>gi|410697657|gb|AFV76725.1| exoribonuclease R [Thermus oshimai JL-2]
Length = 596
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 130/397 (32%), Positives = 190/397 (47%), Gaps = 37/397 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL +AID + + + DDA+ A R+ +G ++Y+HVAD + PGS D++A +
Sbjct: 220 ERADLTHLPAFAIDDEGSQDPDDAVWAERVGEG-FRLYVHVADVAALVAPGSPLDEEARR 278
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM PE + +G+ L E A+T +++ +G + E V S ++
Sbjct: 279 RGANLYLPEGTVPMLPEGV-TQGLGLGLQETSPALTFELLVSEEGELLEERVYPSWVR-V 336
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A E L LK LSEA R RL QGA++ A E +++V E
Sbjct: 337 QRLTYREALEAEGLEA-----LKALSEAFRRR---RLAQGAVELALPEVKVRVEG----E 384
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
I L + V E M+L G A A L P+ Q P ++ + L
Sbjct: 385 AIQVLPLPPYESRVW--VREAMLLAGYAAAHLALREGLPFPFATQEAPARRVEGEGLSAL 442
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q++A L+G
Sbjct: 443 WE----QRKALKRAQLKAV----PAPHKGLGLPLYAQVTSPLRRYLDLVAHQQLRAWLKG 494
Query: 482 ESPPFSAGQLE--GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRAL-ILRFI 538
E P LE G A V R A R S +W + +L +E+ Y +L
Sbjct: 495 ERPLAQGEILERVGAAEAVADLVREAERKSKL---HWTLLYL----QEKGYEGPGVLVER 547
Query: 539 KDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEA 575
+ LL E+GL A + + EV ++ EA
Sbjct: 548 RGGQGVFLLPELGLTAQVALPAPLPLDAEVRLRFLEA 584
>gi|337286673|ref|YP_004626146.1| ribonuclease II [Thermodesulfatator indicus DSM 15286]
gi|335359501|gb|AEH45182.1| ribonuclease II [Thermodesulfatator indicus DSM 15286]
Length = 661
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 43/413 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R+DLT L ID E + DDA+ ++ D ++V IH+AD + ++ S ++A+
Sbjct: 272 DREDLTELLPVTIDGPETRDFDDAIHFVQ-HDDALEVGIHIADVSAFVPKESPIFREALN 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++++LP PM P ++ E SL G+ A++ + L DG I E+ + S+IK
Sbjct: 331 RGSTIYLPDRIIPMLPRVISEEAASLIAGKERPALSFIIKLSPDGEIKEFRLVRSVIKVA 390
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY+ A L E++ K L + A RL GA+
Sbjct: 391 KRLTYDEADAFL------ESDFKPLYKMAEKLFNRRLAAGALPVYL-------------- 430
Query: 364 PIINLYVED--------QADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
P INL VED + A L+SE MIL A + N + YR QP+ +
Sbjct: 431 PEINLRVEDGHIILERIEITGARFLISEYMILANYVAALFLKENQIPAIYRSQPKPKERL 490
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAID----FRKPVRHGVLGLPGYVQFTSPIRRYMDLLA 471
+ + M+ + P H LGLP Y TSPIRR +DL+
Sbjct: 491 ISGGE-------QDIFLNFMQLRQLSRGEMLLSPEFHHGLGLPCYTTVTSPIRRVIDLIM 543
Query: 472 HYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYR 531
+Q+ L+ P FS ++E A ++ + + N + RYW++++L++ + R
Sbjct: 544 EHQLCHFLKTGKPCFSLEEIEEFAKEISRALEVVNTIKNKTYRYWLLKYLKQNARNRPLD 603
Query: 532 ALILRFIKDRTAALLLVEVGLQAAAWV--SVGAQIGDEVEVKVEEAHPRDDII 582
AL++ I R A +LL++ L + S+ Q G++V+V ++ PR++ I
Sbjct: 604 ALVID-IHQRKAKVLLLDFMLTVDVPLPPSLRLQPGEKVKVILKGIQPREETI 655
>gi|297567716|ref|YP_003686687.1| hypothetical protein Mesil_3367 [Meiothermus silvanus DSM 9946]
gi|296852165|gb|ADH65179.1| hypothetical protein Mesil_3367 [Meiothermus silvanus DSM 9946]
Length = 602
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 128/377 (33%), Positives = 186/377 (49%), Gaps = 37/377 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL+ YAID + + + DDA+ A R + G ++ +HVAD +EPGSL D++AM
Sbjct: 223 ERTDLTHLEAYAIDDEGSQDPDDAVWAERTEGG-FRLLVHVADVAALVEPGSLLDQEAMH 281
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM P + A E + L E+ A+T ++ + +G + E + S ++
Sbjct: 282 RGANLYLPEGTVPMLPPR-ATEVLGLGLQEISPALTFALFVSEEGELLEERLFPSWVR-V 339
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
L+Y A E+ L+ LK L+EA Q RL QGA+D A E +++V E
Sbjct: 340 RRLSYREALEVPPLS-----PLKELAEAFG---QKRLSQGALDLALPEVKVQVEGEEIRI 391
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P + A L
Sbjct: 392 TPLPPY------PSRHWVREAMLLAGYAAAHLALREGLPFPFATQEAPSRRVQGEGLAAL 445
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q++A L+G
Sbjct: 446 WE----QRKALKRAQLKAV----PAPHKGLGLPLYAQVTSPLRRYLDLVAHQQLRAWLKG 497
Query: 482 ESPPFSAGQLE--GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRAL-ILRFI 538
+ P A LE G A V R A R S +W + +L E+ Y+ +L
Sbjct: 498 KRPLSHAELLERVGAAEAVADLVREAERKSRL---HWTLLYL----MEQGYQGPGVLVEK 550
Query: 539 KDRTAALLLVEVGLQAA 555
+ LL E+GL A
Sbjct: 551 RGSQGVFLLPEIGLSTA 567
>gi|386827937|ref|ZP_10115044.1| exoribonuclease R [Beggiatoa alba B18LD]
gi|386428821|gb|EIJ42649.1| exoribonuclease R [Beggiatoa alba B18LD]
Length = 658
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 177/350 (50%), Gaps = 15/350 (4%)
Query: 194 YAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTA 253
++ID +E E+DDALS DG K+ I +ADP+ I+ G + D++AM+RGT+V+LPT
Sbjct: 273 FSIDDEETREVDDALSIETDGDG-WKITIAIADPSAVIQRGDVLDREAMRRGTTVYLPTQ 331
Query: 254 TYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATE 313
T M PE ++ + SL +V +A+ + L D ++ ++ I L Y A +
Sbjct: 332 TVLMLPESVSCDIASLSPQQVRSAILLRAWLDKDANLTNSTISREPIIVRRRLHYSDADK 391
Query: 314 LLHL--NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVE 371
+L + LK L A R RL +GA + E +IKV N + + + +
Sbjct: 392 MLTSAETDNDTVALKQLLTIAQQRQSQRLAEGAFNLQRPELKIKVYNGQ-----VTVEIL 446
Query: 372 DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHLPEGPVRSS 429
D+ P+ LV+EMMIL A Y + + + YR Q P I A P+
Sbjct: 447 DKDSPSRLLVAEMMILANHIAAKYAQRHQVPIIYRTQESPLEPITPELLAE----PLGFY 502
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAG 489
+ K++R +++ +P H LGL Y Q TSP+RR+ DL+ Q+ A + GE P+
Sbjct: 503 KVRKLLRPSSLSL-QPAGHSGLGLSAYTQLTSPLRRFADLVMQRQLVAHIVGEPLPYDQD 561
Query: 490 QLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK 539
+L + +R +R + N + + + +++L+ + ++A++L +K
Sbjct: 562 ELFKVLETAERTSRESRMIENDAKKRFFMQYLQDTWSNQPFQAMLLDTVK 611
>gi|254527033|ref|ZP_05139085.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9202]
gi|221538457|gb|EEE40910.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9202]
Length = 394
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 157/291 (53%), Gaps = 10/291 (3%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK-VYIHVADPTKYIEPGSLSDKDAMKR 244
KDLT LK Y ID D+ E+DDA+S + +++G K ++IH+++P K S D +A KR
Sbjct: 2 KDLTDLKTYIIDSDDPHEVDDAIS-LEIKEGNKKYLWIHISNPCKLFLHDSNVDINARKR 60
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S++L PM P+ + +E +L Q +V ++ S+ + DGSI +Y + +IIKP Y
Sbjct: 61 NSSLYLIDQYVPMLPKDI-LEKANLAQNKVSETISASIEFNDDGSINKYEITEAIIKPKY 119
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ A E+L + +EE EL + + + +R +QGAI + +IK+ ED
Sbjct: 120 QLTYDDANEILEIEPKEEIELIEIKKLLEKSITYRKKQGAIIFESPNNKIKLY--EDKII 177
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
+ L + + +V+E MIL G + + +LA P+R Q + N + S +
Sbjct: 178 LTKL----EKTISQIIVAESMILMGYVTSLFIDKYDLAAPFRIQ-KINCNPSEILNKYND 232
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
I+K + KP H LGL YVQ TSP+RRY+DL+ QV
Sbjct: 233 SDIKYIILKQYMGRSYITTKPGNHESLGLKMYVQCTSPLRRYLDLIIQRQV 283
>gi|218295690|ref|ZP_03496486.1| ribonuclease II [Thermus aquaticus Y51MC23]
gi|218243849|gb|EED10376.1| ribonuclease II [Thermus aquaticus Y51MC23]
Length = 598
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 191/397 (48%), Gaps = 37/397 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL +AID + + + DDAL A R+++G ++++HVAD + PGS D +A++
Sbjct: 222 ERVDLTHLPAFAIDDEGSQDPDDALYAERVEEG-FRLFVHVADVAALVGPGSPLDGEALR 280
Query: 244 RGTSVFLPTATYPMFPEKLAM-EGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
RG +++LP PM P LA+ E + L EV A+T +++ +G + + S ++
Sbjct: 281 RGANLYLPEGAVPMLP--LAVTEALGLGLKEVSPALTFELLVSPEGELLREDLYLSWVR- 337
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-- 360
L+Y A L +E A +K L+EA L+ RL QGA+D A E +++V E
Sbjct: 338 VRRLSYREA-----LEVEALAPMKALAEAF---LRKRLAQGALDIALPEVKVRVEGEEIR 389
Query: 361 -DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
P P+ V V E M+L G A A L P+ Q + V
Sbjct: 390 ITPLPLYESRV---------WVREAMLLAGYAAAHLALREGLPFPFATQEAPSHRVEG-- 438
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
EG A K ++ A + P H LGLP Y Q TSP+RRY+DL+AH Q++A L
Sbjct: 439 ---EGLAAMWAQRKALKRAQLKA-VPAPHRGLGLPLYAQVTSPLRRYLDLVAHQQLRAWL 494
Query: 480 RGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRAL-ILRFI 538
+GE P S G++ + R S +W + +L E+ Y +L
Sbjct: 495 KGER-PLSQGEVLERVGAAEAVADLVREGERRSKLHWTLLYL----MEKGYEGPGVLVER 549
Query: 539 KDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEA 575
+ LL E+GL A +S + EV ++ EA
Sbjct: 550 RGGQGVFLLPELGLTAQVALSGPLALNAEVRLRFLEA 586
>gi|386359955|ref|YP_006058200.1| exoribonuclease R [Thermus thermophilus JL-18]
gi|383508982|gb|AFH38414.1| exoribonuclease R [Thermus thermophilus JL-18]
Length = 598
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 128/396 (32%), Positives = 190/396 (47%), Gaps = 35/396 (8%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL +AID + + + DDA+ A R++ G ++++HVAD + PGS D++A++
Sbjct: 222 DRVDLTHLPAFAIDDEGSQDPDDAVFAERVEGG-FRLFVHVADVAALVPPGSPLDEEALR 280
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM P + E + L EV A+T + + +G + E V S ++
Sbjct: 281 RGANLYLPEGTVPMLPPAV-TEALGLGLREVSPALTFELWVSEEGELLEERVYPSWVR-V 338
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A L +E L+ L+EA R RL GA++ A E +++V E
Sbjct: 339 KRLTYREA-----LGVEALRPLEALAEAFRAR---RLAAGALEIALPEVKVRVEGEEVRI 390
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P ++ A +
Sbjct: 391 TPLPPY------PSRVWVREAMLLAGYAAAHLAVREGLPFPFATQEAPSRRVEGEGLAAM 444
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
E K M+ A + P H LGLP Y Q TSP+RRY+DL+AH Q++A L+G
Sbjct: 445 WE-------QRKAMKRAQLKA-VPAPHKGLGLPLYAQVTSPLRRYLDLVAHQQLRAWLKG 496
Query: 482 ESPPFSAGQLE--GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK 539
E P A LE G A V R A R S +W + L + E +L +
Sbjct: 497 ERPLSQAEVLERVGAAEAVADLVREAERKSKL---HWTLLHLEAKGYEGPG---VLVERR 550
Query: 540 DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEA 575
LL E+GL A +S + EV ++ EA
Sbjct: 551 GGQGVFLLPELGLSAQVALSQALPLNAEVRLRFLEA 586
>gi|157413360|ref|YP_001484226.1| ribonuclease II [Prochlorococcus marinus str. MIT 9215]
gi|157387935|gb|ABV50640.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9215]
Length = 397
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 192/386 (49%), Gaps = 22/386 (5%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK-VYIHVADPTKYIEPGSLSDKDAMKR 244
KDLT LK Y ID D+ E+DDA+S + +++G K ++IH+++P K S D +A KR
Sbjct: 5 KDLTDLKTYIIDSDDPHEVDDAIS-LEIKEGNKKYLWIHISNPCKLFLHDSNVDINARKR 63
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S++L PM P+ + +E +L Q +V ++ ++ + DGSI +Y + +IIKP Y
Sbjct: 64 NSSLYLIDQYVPMLPKDI-LEKANLAQNKVSETISAAIEFNDDGSINKYEITEAIIKPKY 122
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ A E+L + +EE EL + + + +R +QGAI + +IK+ ED
Sbjct: 123 QLTYDDANEILEIEPKEEIELIEIKKLLEKSITYRKKQGAIIFESPNNKIKLY--EDKII 180
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
+ L + + +V+E MIL G + + +LA +R Q + +
Sbjct: 181 LTKL----EKTISQIIVAESMILMGYVTSLFIDKYDLAAAFRIQKINCNPSEILNRYNDS 236
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
++ + + M + I KP H LGL YVQ TSP+RRY+DL+ QV +
Sbjct: 237 DIKYIILKQYMGKSYIT-TKPGNHESLGLKMYVQCTSPLRRYLDLIIQRQVYNKINN--- 292
Query: 485 PFSAGQLEGMASIVNM----QTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI-- 538
+ + ++ I++ Q+ L N +Y ++ + K+ Y+ + +++I
Sbjct: 293 -YKVLNKDSISKIIDYSKYRQSENNNILKNDKFKY--LKLFFKNEKKTYYKIIFVKWINH 349
Query: 539 KDRTAALLLVEVGLQAAAWVSVGAQI 564
K A + + L+ + V +I
Sbjct: 350 KKNIALVYFPDYSLEILITLFVSIEI 375
>gi|389580032|ref|ZP_10170059.1| exoribonuclease R [Desulfobacter postgatei 2ac9]
gi|389401667|gb|EIM63889.1| exoribonuclease R [Desulfobacter postgatei 2ac9]
Length = 678
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 196/399 (49%), Gaps = 24/399 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT+L + ID + DDA+S ++G ++ IH+ D YI G D A +R
Sbjct: 290 RKDLTNLPLITIDGQSTQDYDDAISLETTENG-YRLGIHIIDVGAYIRNGDTIDMAARER 348
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S+++P PM P L+ + SL++G++ V+ V ++ I +Y + S+IK
Sbjct: 349 ASSIYMPDDKLPMIPPSLSEDLCSLKEGQLRPGVSTLVHMNRFFEIQDYQIVPSVIKVHQ 408
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
++Y TE +N + + + A LR + RL+ GAI E + + D
Sbjct: 409 QMSY---TEANIVNGKNDPITTLYKMATVLRDK-RLKAGAIQITLPEVNVWL----DENK 460
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQPQSNIDVSAFAHLP 422
IN D+ +P+ LVSEMMIL +A + N++ +R QP+ I L
Sbjct: 461 NINYTKVDRENPSRMLVSEMMILANTLMAEFLKNNDMPGVFRSQAQPKQRIFKGIETQLM 520
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
++ ++ RA +P H LG+P YV TSPIRRY DLL Q+KA G
Sbjct: 521 PNFLQRK---QLSRAVITTHAEP--HAGLGVPAYVTATSPIRRYHDLLTQRQIKAIF-GI 574
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
P+S+ +L+ + + +++ R+ RYW+I++L+ E + L+L +D
Sbjct: 575 GTPYSSRELDDILAAISVAVSNTGRIQAARKRYWLIKYLQDLRGE-SFEGLVLDAYRDHY 633
Query: 543 AALL---LVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPR 578
LL ++E L A+ + + GD+++V ++ A R
Sbjct: 634 NVLLKEFMLESRLPASG---LKLKSGDQIQVTIQHADAR 669
>gi|381191004|ref|ZP_09898516.1| ribonuclease [Thermus sp. RL]
gi|380451093|gb|EIA38705.1| ribonuclease [Thermus sp. RL]
Length = 598
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 193/398 (48%), Gaps = 39/398 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL +AID + + + DDA+ A R++ G ++++HVAD + PGS D++A++
Sbjct: 222 DRVDLTHLPAFAIDDEGSQDPDDAVFAERVEGG-FRLFVHVADVAALVPPGSPLDQEALR 280
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T M P + E + L EV A+T +V+ +G + E V S ++
Sbjct: 281 RGANLYLPEGTVSMLPPGV-TEALGLGLNEVSPALTFELVVSEEGDLLEERVYPSWVR-V 338
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY+ A L+ E L+ L+EA + RL QGA+D E +++V E
Sbjct: 339 QRLTYKEA-----LDRPELGPLRRLAEAFHRK---RLAQGALDLFLPEVKVRVEGEEIRI 390
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P ++ A +
Sbjct: 391 TPLPPY------PSRLWVREAMLLAGYAAAHLALREGLPFPFATQEAPSRRVEGEGLAAM 444
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q++A L+G
Sbjct: 445 WE----QRKALKRAQLKAV----PAPHKGLGLPFYAQVTSPLRRYLDLVAHQQLRAWLKG 496
Query: 482 ESPPFSAGQLE--GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK 539
P LE G A V R A R S +W + +L +E+ Y + ++
Sbjct: 497 GRPLSQKELLERVGAAEAVADAVREAERKSKL---HWTLLYL----QEKGYEGPGV-LVE 548
Query: 540 DRTA--ALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEA 575
R A LL E+GL A +S + E ++ EA
Sbjct: 549 RRGAHGVFLLPELGLSAQVALSQALPLNAEARLRFLEA 586
>gi|384440031|ref|YP_005654755.1| Ribonuclease II [Thermus sp. CCB_US3_UF1]
gi|359291164|gb|AEV16681.1| Ribonuclease II [Thermus sp. CCB_US3_UF1]
Length = 595
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 166/344 (48%), Gaps = 38/344 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHL +AID + + + DDA+ A R+++G ++ +HVAD + PGS D++AM+R
Sbjct: 220 REDLTHLPAFAIDDEGSQDPDDAVYAERVEEG-FRLLVHVADVAAMVAPGSPLDQEAMRR 278
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G +++LP T PM P A E + L EV A+T + + +G + E V S ++
Sbjct: 279 GANLYLPEGTVPMLPPG-ATEALGLGLREVSPALTFELWISLEGEVLEERVYPSWVR-VE 336
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE---D 361
LTY A + + LK L E A L+ RL QG +D A E ++++
Sbjct: 337 RLTYGEALGV--------SALKPLKELAQAFLRKRLAQGGLDIALPEVKVRLEGEAIRIT 388
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFA 419
P P + V E M+L G A A L P+ Q P ++ A
Sbjct: 389 PLPPYESRL---------WVREAMLLAGYAAAHLALREGLPFPFATQEAPSRRMEGEGLA 439
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q++A L
Sbjct: 440 AMWE----QRKALKRAQLKAV----PAPHRGLGLPLYAQVTSPLRRYLDLVAHQQLRAWL 491
Query: 480 RGESPPFSAGQLE--GMASIVNMQTRIARRLSNTSLRYWIIEFL 521
RGE P LE G A V R A R S +W + +L
Sbjct: 492 RGEKPLSQGALLERVGAAEAVADLVREAERKSKL---HWTLLYL 532
>gi|149196829|ref|ZP_01873882.1| exoribonuclease, VacB/RNB family protein [Lentisphaera araneosa
HTCC2155]
gi|149139939|gb|EDM28339.1| exoribonuclease, VacB/RNB family protein [Lentisphaera araneosa
HTCC2155]
Length = 668
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 191/405 (47%), Gaps = 24/405 (5%)
Query: 184 NRKDLTH-LKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R DL ++ID + ++DD LS L++ K+ IH+AD + YI S D +A
Sbjct: 264 GRNDLGEDFYCFSIDDESTSDVDDVLSVEYLENDLFKIGIHIADVSAYIAKASTLDLEAE 323
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
R TS++LPT T MFP +LA SL G A++ L SDG + ++ S+I+
Sbjct: 324 HRATSIYLPTGTVNMFPAELATHKASLLPGSPKPALSYYATLTSDGELRSTHIERSLIQV 383
Query: 303 TYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
+ L+Y +L + E + +LK IL+ A + R ++GAI E +I + +
Sbjct: 384 SEKLSYRYCDGVLEGDEEAKEDLKKDLDILANLADELILKRQEKGAITFNRPENKITIVD 443
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
++++ + LV E MIL A + N + YR Q +S+ V+
Sbjct: 444 -----GVVDITEVRAHSKSRALVGEFMILANNLGAQFCRDNEIPALYRVQEKSDEQVA-- 496
Query: 419 AHLPE--GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+PE PV A +K M+ + + P H LGL Y QFTSPIRRY DL+ Q+
Sbjct: 497 --MPETYDPVSFDAAIKCMKKSRMT-PYPSDHAGLGLDCYTQFTSPIRRYSDLMMQRQLI 553
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
A L G ++ +L + S + R + S +W+ +L + Y A ++
Sbjct: 554 AFLEGRDLVYTEDELLEIKSKAESRLGEVRDVQRQSENFWLYTYLEQSKIGETYLATVVN 613
Query: 537 FIKDRTAALLLVEV-GLQAAAWVSVGA--QIGDEVEVKVEEAHPR 578
+ LLVE+ GL ++ G +IG +EVK++ P+
Sbjct: 614 HLN----GGLLVELDGLTLRLKLNHGKKLEIGTRLEVKIQLVDPK 654
>gi|320450919|ref|YP_004203015.1| ribonuclease II family protein [Thermus scotoductus SA-01]
gi|320151088|gb|ADW22466.1| ribonuclease II family protein [Thermus scotoductus SA-01]
Length = 592
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 193/397 (48%), Gaps = 37/397 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL YAID +E+ + DDA+ A R+ +G ++++HVAD +EP S D++AM+
Sbjct: 216 KRVDLTHLPAYAIDDEESQDPDDAVYAERVPEG-FQLWVHVADVAALVEPFSPLDQEAMR 274
Query: 244 RGTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
RG +++LP T PM P E + G+ L+ EV A+T + + +G I E V S ++
Sbjct: 275 RGANLYLPEGTVPMLPQEATWVLGLGLK--EVSPALTFRLKVSGEGEILEEEVFPSWVR- 331
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-D 361
L+Y+ A L +EE A ++ L A A R + RL QG +D E ++++ E
Sbjct: 332 VRRLSYQEA-----LGVEELAPMRDL--ALAFRRK-RLAQGGLDLRLPEVKVRLEGQEVR 383
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFA 419
P+ +A + V E M L G A A L P+ Q P ++ +
Sbjct: 384 IRPL-------EAYESRIWVQEAMHLAGYAAAHLALREGLPFPFATQEAPARRVEGEGLS 436
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q++A L
Sbjct: 437 AMWE----QRKALKRAQLKAV----PAPHRGLGLPLYAQVTSPLRRYLDLVAHQQLRAWL 488
Query: 480 RGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRAL-ILRFI 538
+GE P S +L + R S +WI+ +L E+ Y IL
Sbjct: 489 KGEK-PLSQEELLQRVGAAEAMADLVREAERKSKLHWILVYL----MEKGYEGRGILVEK 543
Query: 539 KDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEA 575
+ LL E+GL A +S + EV ++ EA
Sbjct: 544 RGGQGIFLLPELGLTAQVALSKPLPLDAEVRLRFLEA 580
>gi|320353092|ref|YP_004194431.1| ribonuclease II [Desulfobulbus propionicus DSM 2032]
gi|320121594|gb|ADW17140.1| ribonuclease II [Desulfobulbus propionicus DSM 2032]
Length = 667
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 115/416 (27%), Positives = 191/416 (45%), Gaps = 39/416 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL L ID + DDA+ +R DG ++V IH+ D + Y+ P S +A +
Sbjct: 276 KRRDLRALDTLTIDGASTRDFDDAVHIVRKDDGHVEVGIHITDVSYYVPPKSPLFAEARE 335
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++ P PM P++L+++ SL QG++ ++ V L + G I S+ ++I+
Sbjct: 336 RSTSIYFPEGHIPMLPQELSLDLCSLIQGKIRPTISFLVTLTATGEIVHSSIVPAVIEVK 395
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
L+Y A +L +E + +L L+ Q R+ +GA+ + + I + + E
Sbjct: 396 RQLSYREADQL----IERDPDLAALNVVRQQLRQQRVDKGALLLSLPDVNIDIRDREH-- 449
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP----------QSNI 413
I +Y+ PA L+SE+MIL A+Y + +R QP Q+N+
Sbjct: 450 --IQVYLSPVDTPARNLISELMILANSLAASYMAAREAPGLFRSQPPPRRRIISGVQNNL 507
Query: 414 DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHY 473
+ AH R P H LGL Y TSPIRR++DL +
Sbjct: 508 --ADIAHQRRFLARGELTA-----------HPKPHSGLGLNSYTTITSPIRRFLDLAMQH 554
Query: 474 QVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQ-YRA 532
Q+ + G FS+ + + A I+ + A + RYWI+ +L +PKE Q A
Sbjct: 555 QLCHMIHGRGILFSSEECKTFAGIIQQKLGRANAIRQQRHRYWILRYL--EPKEGQRINA 612
Query: 533 LILRFIKDRTAALL---LVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 585
L++ R LL L +V L V + GD V +++ P D+++ ++
Sbjct: 613 LVVGQGAKRVNLLLCDCLFDVDLPPNPAFPV--EPGDIVRIRLARVRPLDNLLRIE 666
>gi|126696330|ref|YP_001091216.1| ribonuclease II [Prochlorococcus marinus str. MIT 9301]
gi|126543373|gb|ABO17615.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9301]
Length = 394
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 154/291 (52%), Gaps = 10/291 (3%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK-VYIHVADPTKYIEPGSLSDKDAMKR 244
KDLT LK Y ID D+ E+DDA+S + +++G K ++IH+++P K S D +A KR
Sbjct: 2 KDLTDLKTYIIDSDDPHEVDDAIS-LEIKEGNKKNLWIHISNPCKLFLHDSNVDLNARKR 60
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S++L PM P + +E +L Q +V ++ ++ + DGSI +Y + +IIKP Y
Sbjct: 61 NSSLYLIDQYVPMLPNDI-LEKANLAQNKVSETISAAIEFNDDGSINKYEITEAIIKPKY 119
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE A E+L + +EE EL + + +R +QGAI + +IK+ ED
Sbjct: 120 QLTYEDANEILEIEPKEEIELIEIKNLLKKSITFRKKQGAIIFESPNNKIKLF--EDKII 177
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
+ L + + +V+E MIL G + + NLA +R Q + +
Sbjct: 178 LTKL----EKTISQIIVAESMILMGYVTSLFLDKYNLAAAFRIQKINCNPSEILNRYIDS 233
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
++ + + M + I KP H LGL YVQ TSP+RRY+DL+ QV
Sbjct: 234 DIKYIILKQYMGRSYITI-KPGIHESLGLKMYVQCTSPLRRYLDLIIQRQV 283
>gi|282891364|ref|ZP_06299866.1| hypothetical protein pah_c050o169 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175004|ref|YP_004651814.1| ribonuclease R [Parachlamydia acanthamoebae UV-7]
gi|281498861|gb|EFB41178.1| hypothetical protein pah_c050o169 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479362|emb|CCB85960.1| ribonuclease R [Parachlamydia acanthamoebae UV-7]
Length = 764
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 197/403 (48%), Gaps = 50/403 (12%)
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
KD + K +L++R+DL ++ + ID D A + DDALS + +DG + +H+AD +
Sbjct: 264 KDFGKVVSKK--DLVDREDLRDVECFTIDPDTAKDFDDALSLAKSEDGHFHLGVHIADVS 321
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD- 287
Y++ GS D +A +RG S + P PM P +L+ SLR N +TVSV +H D
Sbjct: 322 HYVQQGSALDLEASRRGNSTYFPGYCLPMLPHELSSNLCSLRAN--VNRLTVSVHIHFDP 379
Query: 288 -GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGA 344
G++ +Y + S+IK +TY A ++L + E L+++ E + R ++G+
Sbjct: 380 EGNMLDYRISRSVIKSKKRMTYREAKQILDGQKKSPYEPTLQLMVELCYKLKRKRYERGS 439
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I+ A + +KV P+ ++L V D +LV E M+ E IA + LP
Sbjct: 440 IEFAMPDLVVKVNENGVPQG-LDLVV---YDITHQLVEEFMLKANEVIALHLDQEGKNLP 495
Query: 405 YRGQ--PQS------NIDVSAFA-HLPEGPVRS-------------------SAIVKIMR 436
YR P S + SAF HL E P S ++ ++ MR
Sbjct: 496 YRIHDVPSSENMRDFSFLTSAFGFHLSEAPTPSELQKLFDEALETPYGQYLATSYIRRMR 555
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
A + H LGL Y FTSPIRRY+DL+ H ++ L + P LE +A+
Sbjct: 556 LAVYS-PANIGHYGLGLTHYCHFTSPIRRYVDLIIH-RLLFGLEADLP-----HLEMVAA 608
Query: 497 IVNMQTRIARRLSNTSL---RYWIIEFLRRQPKERQYRALILR 536
+ Q R++ + + + +Y +++ +++Q +QY A+I R
Sbjct: 609 QCSEQERLSAKAEGSVVLLKKYRLLQEIKQQDPYKQYDAVITR 651
>gi|337288188|ref|YP_004627660.1| ribonuclease II [Thermodesulfobacterium sp. OPB45]
gi|334901926|gb|AEH22732.1| ribonuclease II [Thermodesulfobacterium geofontis OPF15]
Length = 661
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 114/424 (26%), Positives = 207/424 (48%), Gaps = 21/424 (4%)
Query: 166 FDHKDI--SNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
F K++ + + K E + R+DLTHL +D +E + DDALS +D I +Y+H
Sbjct: 253 FSEKELKEAELIVKTEISKEEREDLTHLYTVTVDAEETQDFDDALSFEEKEDKYI-LYVH 311
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
+A+ +++PGS + A++R +++LP YPM P L+ E SL++GE+ ++T +
Sbjct: 312 IAEVADFLKPGSALWEGALERACTLYLPDGIYPMLPFSLSHEKFSLKKGELKGSLTFKIS 371
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQG 343
L +I + S+I+ LTYE ELL + + +I R +
Sbjct: 372 LDKSYNILSFEPFLSLIEVKERLTYEKVDELLTKDPFWQKIYEIFMHFKKKREEKEFY-- 429
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVED-QADPAMRLVSEMMILCGEAIATYGSFNNLA 402
A+ ++ R++ P + V+ + P+ L++E MIL A + N +
Sbjct: 430 AVFLPEVQVRVR--------PDGKIVVKKVEMTPSRHLIAEAMILVNTLAAEFLYQNQIP 481
Query: 403 LPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSP 462
YR QP+ + + E +K + + + P H LGL Y TSP
Sbjct: 482 AIYRSQPKP---LEIIENREENLYLKLLQLKYLAKSELRL-SPAYHFGLGLEYYTTLTSP 537
Query: 463 IRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLR 522
IRR++DLL YQ+K L +SP ++ + + R A ++ N ++Y+++++L+
Sbjct: 538 IRRFLDLLIQYQLKTFLLKKSPLPEEVIIKLLPELSENLQR-ATQIQNKRIKYFLLKYLK 596
Query: 523 RQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGA-QIGDEVEVKVEEAHPRDDI 581
+++ R L+L ++++ A + LV+ + G GDE+ VK+E+ +P +I
Sbjct: 597 IYMQDKPLRGLVLE-VQNKKAKVYLVDYNVIGEVMGFKGILNPGDEIMVKIEKVNPHLEI 655
Query: 582 IYLK 585
+ LK
Sbjct: 656 LRLK 659
>gi|123968527|ref|YP_001009385.1| ribonuclease II [Prochlorococcus marinus str. AS9601]
gi|123198637|gb|ABM70278.1| probable ribonuclease II [Prochlorococcus marinus str. AS9601]
Length = 394
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 154/290 (53%), Gaps = 8/290 (2%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
KDLT+LK Y ID D+ E+DDA+S + + K++IH+++P K S D +A KR
Sbjct: 2 KDLTNLKTYIIDSDDPHEVDDAVSLEIRKGNKKKLWIHISNPCKLFLHESNIDLNARKRN 61
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
+S++L PM P + +E +L Q +V ++ ++ + DGSI +Y + +IIKP Y
Sbjct: 62 SSLYLIDQYVPMLPNDI-LEKANLAQNKVSETISAAIEFNDDGSINKYEITEAIIKPKYQ 120
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
LTYE A E+L + +EE EL + + +++R +QGAI + +IK+ + I
Sbjct: 121 LTYEDANEILEIEPKEEIELLEIKKLLEKSIKFRKKQGAIIFESPNNKIKLY----KDKI 176
Query: 366 INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGP 425
I +E + +++E MIL G + + +LA +R Q + +
Sbjct: 177 ILTKLEKTI--SQIIIAESMILMGYVTSLFIDKYDLAAAFRIQKINCNPSEILNRYNDSD 234
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
++ + + M + I KP H LGL YVQ TSP+RRY+DL+ QV
Sbjct: 235 IKYIILKQYMGRSYIT-TKPGIHESLGLKMYVQCTSPLRRYLDLIIQRQV 283
>gi|379728870|ref|YP_005321066.1| ribonuclease R [Saprospira grandis str. Lewin]
gi|378574481|gb|AFC23482.1| ribonuclease R [Saprospira grandis str. Lewin]
Length = 986
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 177/387 (45%), Gaps = 45/387 (11%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E + R DL + + ID A + DDALS L +G ++ IH+AD T Y+ G
Sbjct: 281 LEIPESEIQKRLDLRQIPTFTIDPATAKDFDDALSVEMLDNGNYRIGIHIADVTYYVAKG 340
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A KR TSV+L PM PEKL+ SLR E + L++ G + E
Sbjct: 341 SPLDKEAAKRTTSVYLVDRVLPMLPEKLSNGVCSLRPHEDKLTFSALFELNAKGHVVEEW 400
Query: 295 VDNSIIKPTYMLTYESATELLH-LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETR 353
++I YE A E+L EL+IL+ A + + R ++GAI + E R
Sbjct: 401 FGKTVIHSDQRFAYEEAQEILDGAEGPYSQELRILNRYAHILRKARFKKGAISFESPEVR 460
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG------------------------ 389
K+ ED +P +++Y++ + D M LV + M+L
Sbjct: 461 FKL--DEDGKP-VDVYLKHRKDAHM-LVEDFMLLANRRVGAKIMNIYRNGGKEIPFVYRI 516
Query: 390 ------EAIATYGSFNNLALPYRGQPQSNIDVS-AFAHL-------PEGPVRSSAIVKIM 435
E + +G F L YR + Q V+ AF + PE V ++ M
Sbjct: 517 HDLPDMEKVNGFGKF-AAQLGYRLKIQDVEQVAGAFNKMLKAAEGKPEHAVLHQLGIRTM 575
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
AA + + H LG Y FTSPIRRY D+L H ++ L E PP+++ +LE +
Sbjct: 576 SKAAYSTQN-IGHYGLGFEDYSHFTSPIRRYADVLVHRNLQHFLMNEKPPYTSEKLEEIC 634
Query: 496 SIVNMQTRIARRLSNTSLRYWIIEFLR 522
++ + R A S++Y E+L+
Sbjct: 635 GHISKKERNAMDAERESIKYKQTEYLQ 661
>gi|384431720|ref|YP_005641080.1| ribonuclease II [Thermus thermophilus SG0.5JP17-16]
gi|333967188|gb|AEG33953.1| ribonuclease II [Thermus thermophilus SG0.5JP17-16]
Length = 598
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 189/396 (47%), Gaps = 35/396 (8%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL +AID + + + DDA+ A R++ G ++++HVAD + PGS D++A++
Sbjct: 222 DRVDLTHLPAFAIDDEGSQDPDDAVFAERVEGG-FRLFVHVADVAALVPPGSPLDEEALR 280
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM P + E + L EV A+T + + +G + E V S ++
Sbjct: 281 RGANLYLPEGTVPMLPPAV-TEALGLGLREVSPALTFELWVSEEGELLEERVYPSWVR-V 338
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A L +E L+ L+EA + RL GA++ A E +++V E
Sbjct: 339 KRLTYREA-----LGVEALRPLEALAEAFRAK---RLAAGALEIALPEVKVRVEGEEVRI 390
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P ++ A +
Sbjct: 391 TPLPPY------PSRVWVREAMLLAGYAAAHLAVREGLPFPFATQEAPSRRVEGEGLAAM 444
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q++A L+G
Sbjct: 445 WE----QRKALKRAQLKAV----PAPHKGLGLPLYAQVTSPLRRYLDLVAHQQLRAWLKG 496
Query: 482 ESPPFSAGQLE--GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK 539
E P A LE G A V R A R S +W + L + E +L +
Sbjct: 497 ERPLSQAEVLERVGAAEAVADLVREAERKSKL---HWTLLHLEAKGYEGPG---VLVERR 550
Query: 540 DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEA 575
LL E+GL A +S + E ++ EA
Sbjct: 551 GGQGVFLLPELGLSAQVALSQALPLNAEARLRFLEA 586
>gi|218781476|ref|YP_002432794.1| exoribonuclease II [Desulfatibacillum alkenivorans AK-01]
gi|218762860|gb|ACL05326.1| Exoribonuclease II [Desulfatibacillum alkenivorans AK-01]
Length = 669
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 198/402 (49%), Gaps = 19/402 (4%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D T L V ID + DDALS + + +V IH++D + Y+E GSL D++A
Sbjct: 279 QRRDFTGLPVLTIDGQATLDYDDALS-LEMDGDYFRVGIHISDVSHYVERGSLLDQEAFA 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R +S+++P PMFP LA +SL+ +V A++V V L D + +Y + S+++
Sbjct: 338 RSSSIYMPDDKIPMFPPLLAEGLLSLKADQVRPAISVMVRLDRDAVVLDYEICPSLVRVR 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY +++ +++ E+ LS A + RL GA+ + E I + D E
Sbjct: 398 RQLTYHE----VNMMADDDKEIIALSGLAEKLREKRLDDGAVLISLPEINIWL----DEE 449
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+ L+ ++ + LVSE MIL +A++ + + +R QP+ +
Sbjct: 450 KNVTLHKVNRESRSRILVSEFMILANRLMASFLADHGSPAVFRAQPEPRL---RLFDRDN 506
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
G + + + + + I KP H LG+ YV TSPIR+Y DL Q++ L G
Sbjct: 507 GTLYQNWMQRRHLSRFILCPKPEPHSGLGVDAYVTATSPIRKYFDLAVQRQIRGVL-GLD 565
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTA 543
++ ++E + + + R+ RYWI+++L + + + +IL KDR
Sbjct: 566 KKYTQTEVENIIANSEVPLSKVSRVQFVRNRYWILKYLETKLGKTE-PGMILERRKDRFV 624
Query: 544 ALL---LVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDII 582
ALL LVE L A+ S+ Q D V++++ + PR+ +
Sbjct: 625 ALLTDCLVECTLPVASDPSLAPQ--DAVQLRIVKVDPREQFL 664
>gi|424843137|ref|ZP_18267762.1| ribonuclease R [Saprospira grandis DSM 2844]
gi|395321335|gb|EJF54256.1| ribonuclease R [Saprospira grandis DSM 2844]
Length = 986
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 178/387 (45%), Gaps = 45/387 (11%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E + R DL + + ID A + DDALS L +G ++ IH+AD T Y+ G
Sbjct: 281 LEIPEAEIQKRLDLRQIPTFTIDPATAKDFDDALSVEMLDNGNYRIGIHIADVTYYVAKG 340
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A KR TSV+L PM PEKL+ SLR E + L++ G + E
Sbjct: 341 SPLDKEAAKRTTSVYLVDRVLPMLPEKLSNGVCSLRPHEDKLTFSALFELNAKGHVVEEW 400
Query: 295 VDNSIIKPTYMLTYESATELLH-LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETR 353
++I YE A E+L EL+IL+ A + + R ++GAI + E R
Sbjct: 401 FGKTVIHSDQRFAYEEAQEILDGAEGPYSQELRILNRYAHILRKARFKKGAISFESPEVR 460
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG------------------------ 389
K+ ED +P +++Y++ + D M LV + M+L
Sbjct: 461 FKL--DEDGKP-VDVYLKHRKDAHM-LVEDFMLLANRRVGAKIMNIYRNGGKEVPFVYRI 516
Query: 390 ------EAIATYGSFNNLALPYRGQPQSNIDVS-AFAHL-------PEGPVRSSAIVKIM 435
E + +G F L YR + Q +V+ AF + PE V ++ M
Sbjct: 517 HDLPDMEKVNGFGKF-AAQLGYRLKIQDVEEVAGAFNKMLKAAEGKPEHAVLHQLGIRTM 575
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
AA + + H LG Y FTSPIRRY D+L H ++ L E PP+++ +LE +
Sbjct: 576 SKAAYSTQN-IGHYGLGFEDYSHFTSPIRRYADVLVHRNLQHFLMHEKPPYTSEKLEEIC 634
Query: 496 SIVNMQTRIARRLSNTSLRYWIIEFLR 522
++ + R A S++Y E+L+
Sbjct: 635 GHISKKERNAMDAERESIKYKQTEYLQ 661
>gi|406894258|gb|EKD39117.1| hypothetical protein ACD_75C00507G0012 [uncultured bacterium]
Length = 666
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 120/439 (27%), Positives = 199/439 (45%), Gaps = 67/439 (15%)
Query: 173 NFLQKAEDNLLN---RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
+ LQ+ +++L N R DLTHL ID + DD+LS + DG V IH++D
Sbjct: 262 HILQRGQNDLFNDPGRIDLTHLAPLTIDGPTTLDFDDSLSLEEV-DGNYLVGIHISDVAY 320
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y+ PG +AM RGTS++ P PM P L+ SL QGE ++ ++L +
Sbjct: 321 YVRPGDALFSEAMHRGTSIYFPEGQIPMLPRHLSQGICSLIQGETRATISFMILLSPEAE 380
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTAT 349
I + + SI + LTY+ ++ LE + E+KIL+ RL+ GA+
Sbjct: 381 ILKVRISPSITRVKRRLTYDEVDKM----LETDPEIKILNMLRRKLRTERLKNGALLL-- 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQAD----------PAMRLVSEMMILCGEAIATYGSFN 399
P P +N++++ QA PA ++SEMMIL A Y +
Sbjct: 435 ------------PFPDVNIFIDHQAKVHVSLSKSDTPARTIISEMMILANTVAAKYVADR 482
Query: 400 NLALPYRGQP--QSNI----DVSAFAH------LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+ +R QP Q+ I D F + LP G + ++A
Sbjct: 483 MVPGLFRSQPILQNRIVHGEDDDLFQNTLQRKQLPRGELSTTA---------------KS 527
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
H LG+ Y TSPIRR +DL+ +Q+ + +R + P F+ + S++ A
Sbjct: 528 HSGLGVSHYTTVTSPIRRLLDLVMQHQLNSIIRRQVPCFTEEMCKDFTSVLTRTLATANN 587
Query: 508 LSNTSLRYWIIEFLRRQPKERQY-RALILRFIKDRTAALL---LVEVGLQAAAWVSVGAQ 563
+ RYW++++L ++ QY A++++ R LL L+++ L +
Sbjct: 588 VRQQRQRYWLLKYL--ADRQGQYIDAMVIQSGPKRVNLLLTDILMDIDLPPPG--EKNPE 643
Query: 564 IGDEVEVKVEEAHPRDDII 582
G V+V+V ++ P D ++
Sbjct: 644 PGAMVKVRVIKSEPLDSVV 662
>gi|408418469|ref|YP_006759883.1| exoribonuclease II [Desulfobacula toluolica Tol2]
gi|405105682|emb|CCK79179.1| predicted exoribonlease II [Desulfobacula toluolica Tol2]
Length = 659
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 197/401 (49%), Gaps = 24/401 (5%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT L + ID + DDA+S + G + IH+ D YI+ D A +R
Sbjct: 272 RKDLTDLPLITIDGQSTLDFDDAISLENTESG-YTLGIHIIDVDAYIKSDDPIDLAARER 330
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S+++P PM P L+ + SL++ E+ ++ + L I +Y + SIIK
Sbjct: 331 ASSIYMPDDKLPMIPPNLSEDLCSLKENEIRPGISTIIKLSRFFEIQDYKIVPSIIKVHK 390
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
++Y +A LN +++ + A LR + RL+ GA E + + E+ +
Sbjct: 391 QMSYSAAN---LLNGKDDPITTLYKIAIRLR-EKRLKAGATQITLPEVNVWI---EENQE 443
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I L + D+ +P+ L+SEMMI +A + S NN+ +R Q Q L +G
Sbjct: 444 IGYLKI-DRENPSRMLISEMMIFANSLMAEFLSANNVPAVFRSQAQPK------QRLFKG 496
Query: 425 PVRSSAIVKIMR----AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ +S I+ M+ + AI +P H LG+ Y TSPIRRY DLL Q+K+
Sbjct: 497 -IETSLILNFMQRKQLSRAIIGTEPESHSGLGVKAYATATSPIRRYHDLLTQRQIKSIF- 554
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKD 540
G ++ +LE + +++ A R+ ++ RYWII++L + + Y AL+L +D
Sbjct: 555 GYDKAYTKTELETIIQSISVAIANAGRIQSSRKRYWIIKYLESK-RGNTYEALVLDCHRD 613
Query: 541 RTAALLLVEVGLQAAAWVS-VGAQIGDEVEVKVEEAHPRDD 580
+L+ E +A VS V + GD ++V ++ A R D
Sbjct: 614 H-YNVLIKEFMYEAKLPVSGVKLKHGDIIQVTIQHADARRD 653
>gi|224370379|ref|YP_002604543.1| putative ribonuclease II (RNB family protein) [Desulfobacterium
autotrophicum HRM2]
gi|223693096|gb|ACN16379.1| putative ribonuclease II (RNB family protein) [Desulfobacterium
autotrophicum HRM2]
Length = 663
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 191/409 (46%), Gaps = 32/409 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT+L + ID + DDA+S + DG I + IH+ D +I+ D DA R
Sbjct: 276 RCDLTNLPIITIDGQSTLDYDDAISLEKKDDGYI-IGIHIIDVAFFIKDDDPIDLDARTR 334
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+S+++P M P L+ SL++GE+ ++ V L+ I +Y + S+IK
Sbjct: 335 GSSIYMPDDKISMLPPSLSENLCSLKEGEIRPGISTLVHLNRFFEITDYQIVTSVIKVHK 394
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
+TY A LN E+E + L +AA + + RL+ G + E I + + +
Sbjct: 395 QMTYSEAN---MLNGEDEP-ITTLYKAATVLREKRLKAGGVQITLPEVNIWIEDNGE--- 447
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------SNIDVSAF 418
I + D+ +PA L+SEMMIL +A + S + +R QP I+ S F
Sbjct: 448 -IGISRVDRENPARMLISEMMILANTLMADFLSTRKVPAVFRSQPDPKKRLFQGIETSLF 506
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
+ + S AI+ KP H LG+ YV TSPIRRY DLL Q+++
Sbjct: 507 PNCMQRKQLSRAIIGT---------KPENHSGLGVKAYVTATSPIRRYYDLLTQRQIRST 557
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
L G P ++ L+ + +V ++ RYW++ +L K A++L
Sbjct: 558 L-GYEPAYTKEALDAILQVVKEPVTNTGKIQFQRRRYWLLRYLETM-KGSTCEAIVLDAR 615
Query: 539 KDRTAALL---LVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYL 584
+D +L ++E + ++ + + GD + V ++ A R D + L
Sbjct: 616 RDFYMVMLKDYMLEWRISSSG---LNLKPGDLINVTIQHADARRDQLSL 661
>gi|404372010|ref|ZP_10977311.1| ribonuclease R [Clostridium sp. 7_2_43FAA]
gi|226911854|gb|EEH97055.1| ribonuclease R [Clostridium sp. 7_2_43FAA]
Length = 745
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 181/370 (48%), Gaps = 47/370 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL +L++ ID ++A +LDDA+S RL +G+ ++ +H+AD + Y+ + DK+A+KR
Sbjct: 245 RKDLRNLRMVTIDGEDAKDLDDAVSIERLDNGKFRLGVHIADVSHYVREKNPLDKEALKR 304
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A++ +V+ +G + ++ ++ S+IK +
Sbjct: 305 ATSVYLIDRVIPMLPKKLSNGICSLNPKVDRLALSCFMVIDKNGKVIQHEIEESVIKTSE 364
Query: 305 MLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N EE + K + E + + R+++GAID E++I +
Sbjct: 365 RMTYTDVTKILENNDEELIKRYDYLVDDFKAMEELCNILREKRIKRGAIDFNFEESKIIL 424
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
+ P I++ D+A A R++ E M++C E IA + + NL YR
Sbjct: 425 NDLGKP---IDIKPYDRA-IANRIIEEFMLVCNETIAEHMFWTNLPFVYRIHEEPDEEKL 480
Query: 407 ----------------GQ---PQSNIDV-SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV 446
GQ P++ D+ E V S+ +++ M A P
Sbjct: 481 EKFKEFVYNLGYIVRWGQEAHPRALQDILEKVKGKKEETVVSTLLLRSMMQAKY---SPE 537
Query: 447 RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRI 504
G GL Y FTSPIRRY DL H +K L G+ AG+L + I + Q+
Sbjct: 538 CVGHFGLAAKYYCHFTSPIRRYPDLQIHRIIKEQLNGKIDEKRAGRLTNIVEIASKQSSE 597
Query: 505 ARRLSNTSLR 514
RL+ + R
Sbjct: 598 MERLAQEAER 607
>gi|78779317|ref|YP_397429.1| ribonuclease II [Prochlorococcus marinus str. MIT 9312]
gi|78712816|gb|ABB49993.1| putative ribonuclease II [Prochlorococcus marinus str. MIT 9312]
Length = 394
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 184/367 (50%), Gaps = 21/367 (5%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK-VYIHVADPTKYIEPGSLSDKDAMKR 244
KDLT+LK Y ID + E+DDA+S + +++G K ++IH+++P K+ S D DA +
Sbjct: 2 KDLTNLKTYIIDSENPHEVDDAIS-LEIKNGNTKKLWIHISNPCKFFLHDSNVDLDARLK 60
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S++L PM P+ + +E +L Q ++ ++ ++ + DGSI Y + + IKP Y
Sbjct: 61 NSSLYLTDQYVPMLPKNI-LEKANLAQNKISETISGAIEFNDDGSIHNYEITEAKIKPKY 119
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE A E+L L +EE EL + + +R +QGAI + ++IK+ +
Sbjct: 120 QLTYEDANEILELEPKEEIELIEIKNLLEKSISFRKKQGAIIFESPNSKIKLYKDK---- 175
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I L D+ + +VSE MIL G + + NLA +R Q + +
Sbjct: 176 -IILKKLDKT-ISQSIVSESMILMGYVTSLFIDKYNLAAAFRIQKLNCKPHEILNRYNDS 233
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
++ + + M + I KP H LGL YVQ TSP+RRY+DL+ QV +
Sbjct: 234 EIKYIILKQYMGRSYIT-TKPGIHESLGLKMYVQCTSPLRRYLDLIIQRQVYNKIND--- 289
Query: 485 PFSAGQLEGMASIV----NMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK- 539
+ ++ ++ I+ N Q+ N +Y + F+ K+ Y+ + +++I
Sbjct: 290 -YELLSIKSVSEIIDYSKNRQSENNNIFKNDKFKYLKLFFMNE--KKPFYKIIFVKWINH 346
Query: 540 DRTAALL 546
R AL+
Sbjct: 347 KRNIALV 353
>gi|397904749|ref|ZP_10505644.1| 3'-to-5' exoribonuclease RNase R [Caloramator australicus RC3]
gi|397162201|emb|CCJ32978.1| 3'-to-5' exoribonuclease RNase R [Caloramator australicus RC3]
Length = 706
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 121/451 (26%), Positives = 208/451 (46%), Gaps = 71/451 (15%)
Query: 120 KDSDRVLLAVAQRPDGKKN------WMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISN 173
KD D+V++ V + P+ ++N ++ ++N I + +P E+F K++
Sbjct: 173 KDGDKVIVEVTKWPEKRRNPEGRIIEVLGNKNKPGIDILSIIKKYNLP--EEFP-KEVEE 229
Query: 174 FLQKAEDNL-----LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
+ D + R+DL +L++ ID ++A +LDDA+S RL DG+ K+ +H+AD T
Sbjct: 230 YANAIPDEIPEKEIKRRRDLRNLRIVTIDGEDAKDLDDAVSIERLPDGKFKLGVHIADVT 289
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD- 287
Y++ S DK+A+KRGTSV+L PM P+KL+ SL + +T+S V+ D
Sbjct: 290 YYVKEKSPLDKEALKRGTSVYLVDRVIPMLPKKLSNGVCSLNPR--VDRLTLSCVMTIDQ 347
Query: 288 -GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQW 338
G + +Y + S+IK +TY T++L N + + K + E + +
Sbjct: 348 NGKVVDYEIFESVIKTCERMTYTDVTKILRDNDPDLIKRYDYLYEDFKAMEELCNILNRK 407
Query: 339 RLQQGAIDTATLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R+Q+GA+D E +I + P + +P + D A R++ E MI+C E IA +
Sbjct: 408 RMQRGALDFDFEECKIILDEKGKPVEVKPY-------ERDIANRIIEEFMIVCNETIAEH 460
Query: 396 GSFNNLALPYRGQPQSNID----VSAFAH--------------------------LPEGP 425
+ N+ YR + + + F H E P
Sbjct: 461 MFWANIPFVYRIHEDPDYEKIMHFNEFVHNLGYKVKFAKDIHPKMLQEVLESAKGKKEQP 520
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGES 483
+ +++ ++ A P G GL Y FTSPIRRY DL+ H +K L+G+
Sbjct: 521 IVDMLLLRSLKQARY---SPECSGHFGLASKYYCHFTSPIRRYPDLIIHRIIKEYLKGKI 577
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLR 514
+L+ + Q+ RL++ + R
Sbjct: 578 DEKRIEKLKAIVEKAAKQSSDMERLADEAER 608
>gi|345304350|ref|YP_004826252.1| Exoribonuclease II [Rhodothermus marinus SG0.5JP17-172]
gi|345113583|gb|AEN74415.1| Exoribonuclease II [Rhodothermus marinus SG0.5JP17-172]
Length = 659
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 193/401 (48%), Gaps = 18/401 (4%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R D THL + ID E+DDA + L +G ++ IH+AD ++ P + D+ A +
Sbjct: 262 DRTDFTHLPAFHIDDATTREIDDAFTVEPLPEGGWRLGIHLADVPHFVAPDDVLDQAAQR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LPT + PM PE+L+ + SLR + ++V V + + I + + I+
Sbjct: 322 RGLTRYLPTGSIPMLPERLSHDLASLRPDAIRPTLSVVVTVDASEQIRDVQLVRGQIRVA 381
Query: 304 YMLTYESATELLHLNLEEE-AE-LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+ TYE+A +L E AE L++L+ + + RL +GA+ E +++V
Sbjct: 382 HGFTYETADAVLSGETPHELAEALQVLARLSQTLTEARLARGALLIRRPELKVQVDG--- 438
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAH 420
I L V D PA R+VSE MIL A + + N L + YR Q P + ++
Sbjct: 439 --DTITLKVIDPDTPARRMVSEWMILANAEAARWAAENELPMIYRVQDPPDDPELQG-RK 495
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
L PV ++ ++ +R P H LGL YVQ TSPIRRY DL Q+ A L
Sbjct: 496 LDYDPVLLASRLRGLRRTRFS-THPQPHAGLGLEAYVQITSPIRRYADLALQRQIVAALA 554
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKD 540
P+ +L + + R AR L + RYW + +L R E+ + A+++
Sbjct: 555 DAPLPYDTTRLFEVLATAEAAEREARALEQQATRYWALVWLERH-AEQTFEAIVVA---- 609
Query: 541 RTAALLLVEV---GLQAAAWVSVGAQIGDEVEVKVEEAHPR 578
R A LVE+ GL+ + GD V V+ E PR
Sbjct: 610 RRPAGYLVELQPYGLRGLLATADALTPGDRVAVRPEAIDPR 650
>gi|55981503|ref|YP_144800.1| ribonuclease II family protein [Thermus thermophilus HB8]
gi|55772916|dbj|BAD71357.1| ribonuclease II family protein [Thermus thermophilus HB8]
Length = 598
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 168/339 (49%), Gaps = 32/339 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL +AID + + + DDA+ A +++ G ++++HVAD + P S D++A++
Sbjct: 222 DRVDLTHLPAFAIDDEGSQDPDDAVFAEKVEGG-FRLFVHVADVAALVPPKSPLDEEALR 280
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM P + E + L EV A+T + + +G + E V S ++ T
Sbjct: 281 RGANLYLPEGTVPMLPPAV-TEALGLGLREVSPALTFELWVSEEGELLEERVYPSWVRVT 339
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A L +E L+ L+EA + RL GA++ A E +++V E
Sbjct: 340 -RLTYREA-----LGVEALRPLEALAEAFRAK---RLAAGALEIALPEVKVRVEGEEVRI 390
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P ++ A +
Sbjct: 391 TPLPPY------PSRVWVREAMLLAGYAAAHLAVREGLPFPFATQEAPARRVEGEGLAAM 444
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q++A L+G
Sbjct: 445 WE----QRKALKRAQLKAV----PAPHKGLGLPLYAQVTSPLRRYLDLVAHQQLRAWLKG 496
Query: 482 ESPPFSAGQLE--GMASIVNMQTRIARRLSNTSLRYWII 518
E P A LE G A V R A R S +W +
Sbjct: 497 ERPLSQAEVLERVGAAEAVADLVREAERKSKL---HWTL 532
>gi|268318058|ref|YP_003291777.1| exoribonuclease II [Rhodothermus marinus DSM 4252]
gi|262335592|gb|ACY49389.1| Exoribonuclease II [Rhodothermus marinus DSM 4252]
Length = 659
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 193/401 (48%), Gaps = 18/401 (4%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R D THL + ID E+DDA + L +G ++ IH+AD ++ P + D++A +
Sbjct: 262 DRTDFTHLPAFHIDDASTREIDDAFTVEPLAEGGWRIGIHLADVPHFVAPDDVLDREARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LPT + PM PE+L+ + SLR + ++V V + + I + + I+
Sbjct: 322 RGLTRYLPTGSIPMLPERLSHDLASLRPDAIRPTLSVVVTVDASEQIRDVQLVRGQIRVA 381
Query: 304 YMLTYESATELLHLNLEEE-AE-LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+ TYE+A +L E AE L++L+ + + RL +GA+ E +++V
Sbjct: 382 HGFTYETADAVLSGETPHELAEALQVLARLSQTLTEARLARGALLIRRPELKVQVDG--- 438
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAH 420
I L V D PA R+VSE MIL A + + N L + YR Q P + ++
Sbjct: 439 --DTITLKVIDPDTPARRMVSEWMILANAEAARWAAENELPMIYRVQDPPDDPELQG-RK 495
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
L PV ++ ++ +R P H LGL YVQ TSPIRRY DL Q+ A L
Sbjct: 496 LDYDPVLLASRLRGLRRTRFST-HPQPHAGLGLEAYVQITSPIRRYADLALQRQIVAALA 554
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKD 540
P+ +L + + R AR L + RYW + +L R + + A+++
Sbjct: 555 DAPLPYDTTRLFEVLATAEAAEREARALEQQATRYWALVWLERHAAQ-TFEAIVVA---- 609
Query: 541 RTAALLLVEV---GLQAAAWVSVGAQIGDEVEVKVEEAHPR 578
R A LVE+ GL+ + GD V V+ E PR
Sbjct: 610 RRPAGYLVELQPYGLRGLLATADALAPGDRVAVRPEAIDPR 650
>gi|46199473|ref|YP_005140.1| ribonuclease [Thermus thermophilus HB27]
gi|46197099|gb|AAS81513.1| putative ribonuclease [Thermus thermophilus HB27]
Length = 599
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 168/339 (49%), Gaps = 32/339 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL +AID + + + DDA+ A +++ G ++++HVAD + P S D++A++
Sbjct: 223 DRVDLTHLPAFAIDDEGSQDPDDAVFAEKVEGG-FRLFVHVADVAALVPPKSPLDEEALR 281
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM P + E + L EV A+T + + +G + E V S ++ T
Sbjct: 282 RGANLYLPEGTVPMLPPAV-TEALGLGLREVSPALTFELWVSEEGELLEERVYPSWVRVT 340
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A L +E L+ L+EA + RL GA++ A E +++V E
Sbjct: 341 -RLTYREA-----LGVEALRPLEALAEAFRAK---RLAAGALEIALPEVKVRVEGEEVRI 391
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P ++ A +
Sbjct: 392 TPLPPY------PSRVWVREAMLLAGYAAAHLAVREGLPFPFATQEAPARRVEGEGLAAM 445
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q++A L+G
Sbjct: 446 WE----QRKALKRAQLKAV----PAPHKGLGLPLYAQVTSPLRRYLDLVAHQQLRAWLKG 497
Query: 482 ESPPFSAGQLE--GMASIVNMQTRIARRLSNTSLRYWII 518
E P A LE G A V R A R S +W +
Sbjct: 498 ERPLSQAEVLERVGAAEAVADLVREAERKSKL---HWTL 533
>gi|158520465|ref|YP_001528335.1| exoribonuclease II [Desulfococcus oleovorans Hxd3]
gi|158509291|gb|ABW66258.1| Exoribonuclease II [Desulfococcus oleovorans Hxd3]
Length = 666
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/402 (27%), Positives = 193/402 (48%), Gaps = 16/402 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT L ++ ID + + DDALS +++G ++ IH++D YI+ D +A+K
Sbjct: 273 DRVDLTGLSLFTIDGSQTLDFDDALSLEPMENGACRLGIHISDVGHYIKKEDPLDAEALK 332
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++ PM P +++ SL G+ A+++ + L S + E V S+I+
Sbjct: 333 RGSSIYTADKKIPMLPAEISEGLCSLVAGKPRPAISMLITLSSSAEVMECRVVASVIRVE 392
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY ++L+L+++ L LS A + R++ GA+ E ++ D
Sbjct: 393 NHLTYSQ----VNLSLDKDERLGRLSRIAVRLREKRVRDGALLIEIPELYVQF----DDN 444
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+ L D+ P+ L+ EMMIL +A + + L +R QP+ + E
Sbjct: 445 RAVVLAKGDRESPSRILIEEMMILANTVMARFLKEHGLPAIFRSQPEPKTRLFKKGTTGE 504
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
++ K++ +D KP RH LG+ Y TSPIR+Y DL+ QV+A L G
Sbjct: 505 TLFQNWVQRKMVARVVVD-TKPERHCGLGVDLYTSATSPIRKYADLITQRQVRAAL-GLE 562
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTA 543
P++ QL+ + ++ ++ RYW+ + L + +R A++L K+ +
Sbjct: 563 TPYTEDQLQHLMQMLQQPLSYVGKIQQARHRYWVFKHLETKTGQR-VNAIVLDRFKNEYS 621
Query: 544 ALL---LVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDII 582
LL L E L S + D ++V ++ + R+ +I
Sbjct: 622 ILLPDYLTECRLPMPP--SALLKPKDTIQVTIQHVNARNGVI 661
>gi|333993976|ref|YP_004526589.1| ribonuclease II family protein [Treponema azotonutricium ZAS-9]
gi|333735593|gb|AEF81542.1| ribonuclease II family protein [Treponema azotonutricium ZAS-9]
Length = 657
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 156/320 (48%), Gaps = 36/320 (11%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALS--------AMRLQDG-------RIKVYIHVADPT 228
+R DLTHLK YAID +D+ DDA+S +R +G R+ +++HVADP
Sbjct: 253 DRLDLTHLKSYAIDNAWSDDPDDAVSLEGPETSAELRSSEGSPTDSQGRLVLWVHVADPA 312
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMF-PEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
I+PGS +D +A RG ++++P + M PE L + + L +C A++ +VL++
Sbjct: 313 ASIKPGSPADLEARGRGATLYVPEGSARMLAPEALPLFALGLGADGICPALSFKIVLNAA 372
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAI-- 345
SI E + S +K T LTYE A L E EL L AA + RL GAI
Sbjct: 373 FSIVETEIIPSKVKVT-RLTYEEADNL------EGGELAGLFALAARNTERRLDTGAILI 425
Query: 346 --DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
A + + ++ + L AD +V E M+L GE A + N +
Sbjct: 426 DLPDAHIHVHLDKIISQNKVSVEALVPRKSAD----MVRECMVLAGEGAARWALRNKVPF 481
Query: 404 PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
P+ GQ + A L + + + MR + KP H LGL Y Q TSP+
Sbjct: 482 PFVGQEAGELPEERLAGL----AGAFQLRRCMRPRTLSA-KPAIHWGLGLDEYTQVTSPL 536
Query: 464 RRYMDLLAHYQVKACLRGES 483
RRY DLL H Q++A L+GE+
Sbjct: 537 RRYTDLLCHQQIRAFLKGEA 556
>gi|392409991|ref|YP_006446598.1| exoribonuclease R [Desulfomonile tiedjei DSM 6799]
gi|390623127|gb|AFM24334.1| exoribonuclease R [Desulfomonile tiedjei DSM 6799]
Length = 665
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 197/397 (49%), Gaps = 22/397 (5%)
Query: 193 VYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPT 252
+ AID ++DDA+S R D + + +H+ D + Y+E S D + R TS++LP
Sbjct: 278 LLAIDSSTTRDVDDAISLSRDGDHLV-LGVHITDASYYVEHNSSLDLEIRDRATSIYLPE 336
Query: 253 ATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESAT 312
T PM P L+ + SL G+ A+TV V + + ++++ SII+ LTYE A
Sbjct: 337 ITIPMMPRVLSEQAASLESGQDRLALTVLVRFGPEMQLLDFALKRSIIRINQRLTYEEAE 396
Query: 313 ELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVED 372
E + + EA + + A++LR Q R++ GAI E ++V + + I ++V +
Sbjct: 397 EKIAVPGSTEALM--FAVASSLR-QKRIESGAIIFKDPEISVRVNHAGE----IEVFVRN 449
Query: 373 QADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHLPEGPVRSSA 430
+ PA LVSEMMIL A Y N + +R Q P I++ PV S
Sbjct: 450 RETPAQILVSEMMILANNLFARYLRDNKIPGIFRSQGPPLEKIELGE----EYDPVASYR 505
Query: 431 IVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQ 490
K++ + P H LGL Y +SP+RRY DL+ Q+KA L G + +
Sbjct: 506 SKKVLARGDLS-TDPDAHSTLGLDIYTTASSPLRRYPDLIVQRQLKAALEGAT-LLRPQE 563
Query: 491 LEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALIL-RFIKDRTAALLLVE 549
LE + + + A L +Y+++++L ++ K ++++A++L RF R + + +
Sbjct: 564 LERILDQIIPRLDRAASLERERQKYFLLKYLEKR-KAQEFQAIVLHRF--PRFYLVQITD 620
Query: 550 VGLQAAAWVSVGAQI--GDEVEVKVEEAHPRDDIIYL 584
+ L A G + G+ V K+E+ PRDD + L
Sbjct: 621 LALNAVLRTPAGTNLSPGERVVTKIEKVSPRDDRLTL 657
>gi|353237501|emb|CCA69472.1| hypothetical protein PIIN_03372 [Piriformospora indica DSM 11827]
Length = 872
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 132/463 (28%), Positives = 207/463 (44%), Gaps = 61/463 (13%)
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
D S+ L ++ + R D L V+ ID +A ELDD +S DG V++HVADPT
Sbjct: 398 DTSSLL-SSDPHYDQRHDWGQLPVFVIDSADAHELDDGISVEAQPDGSAWVHVHVADPTS 456
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMS---LRQGEVCNAVTVSVVLHS 286
+ A RG++++ T PM P AM S L +G+ + +T S +
Sbjct: 457 RLPRSHPIALTAASRGSTIYGSQETIPMLPNSYAMTEHSLGALGEGKGQSVLTFSTRVDQ 516
Query: 287 DGSIAEYSVDNSIIKPTYMLTYESATELLHL----------NLEEE-----AELKILSEA 331
G I + V I+ ++LTY+ + L + N+++E +ILSE
Sbjct: 517 QGGIIDSCVRVGIVHNIHVLTYKGVEKSLGIDIPYYTSPFGNVKQEDPGRPVPQEILSEL 576
Query: 332 AAL-RLQWRLQQGAIDTATLETRIKVANPEDPE----------------PIINLYVEDQA 374
AL ++ Q+ D + AN P+ P I VE
Sbjct: 577 KALQKIAENQQKRRFDAGRFSWHVPKANARFPDKPIPASEQIPQLWTGFPTIEYTVEPGI 636
Query: 375 -DPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVK 433
PA +LV++ MIL G+A + + L +R PQ + + HL GPV AI
Sbjct: 637 LSPARQLVAQAMILAGQAAGRFCAERGLPALFRTSPQP-LGLQE-KHLNLGPVVPMAIAL 694
Query: 434 IMRAAAIDFR---KPVRH---GVLGLPGYVQFTSPIRRYMDLLAHYQVK-ACLRGESPPF 486
R A + P H GV G GYV+ TSP+RR+ D++ H+Q+K A L SP
Sbjct: 695 KQRVAGVPAYYSVNPSAHWALGVDGEHGYVRVTSPLRRFSDMVMHWQIKSALLNPASPEI 754
Query: 487 SAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEF----LRRQPKER---QYRALILR--- 536
S ++E A+ ++ + R+ LS + YW F LR +P + + LI
Sbjct: 755 SKDEMESYAARLHERERLVTALSRSQNSYWASVFIQRRLRHEPGDSVLGNQKGLISSLPE 814
Query: 537 ---FIKDRTAALLLVEVGLQAAAWVSVGAQ--IGDEVEVKVEE 574
F ++ ++L E+GL+ + S + +GDEV+V+V +
Sbjct: 815 LETFSREYVTGVVLPELGLKGWLYSSTKSALGLGDEVQVRVTD 857
>gi|343084834|ref|YP_004774129.1| ribonuclease R [Cyclobacterium marinum DSM 745]
gi|342353368|gb|AEL25898.1| ribonuclease R [Cyclobacterium marinum DSM 745]
Length = 725
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/407 (27%), Positives = 182/407 (44%), Gaps = 74/407 (18%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
ED + RKD + + ID +A + DDA+S L +G +++ +H+AD T Y++P +L +
Sbjct: 264 EDEIKKRKDFRDIDTFTIDPADAKDFDDAISFRYLDNGNMEIGVHIADVTHYVKPKTLME 323
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A R TSV+L T PM PE+L+ SLR E + +T S V + ++ +
Sbjct: 324 KEAYDRATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEITDQAEVKDFWIG 381
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRI 354
++I TYE A E + E A+ LKI S A LR R ++GAI+ T+E +
Sbjct: 382 RTVIHSNRRFTYEEAQENMDNESGEYAKDLLKINSLAKLLR-SARFKKGAINFETVEVKF 440
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------------------- 395
++ P +I ++++ D +L+ E M+L + +ATY
Sbjct: 441 QLDESGTPTGLI---IKERKD-VHKLIEEFMLLANKTVATYIYNKNKGKSTFVYRVHDYP 496
Query: 396 -----GSFNNLALPYR-----------------------GQPQSNIDVSAFAHLPEGPVR 427
+F+N A + G+P+ NI L + +R
Sbjct: 497 DLEKLATFSNFAKKFGHEIKILDEKKVSNSLNKLMDDIVGKPEQNI-------LEQLAIR 549
Query: 428 SSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFS 487
S A K +P +H L Y FTSPIRRY D++ H ++ L G PP +
Sbjct: 550 SMAKAKYT-------TEPKQHFGLAFDHYTHFTSPIRRYPDMMVHRLLQHYLDGGKPPEN 602
Query: 488 AGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
E + R A S++Y +E++ + +++ Y +I
Sbjct: 603 QAWEEKCVHSSEREKRAA-DAERASIKYKQVEYM-KLAEDKDYSGII 647
>gi|320161361|ref|YP_004174585.1| putative ribonuclease [Anaerolinea thermophila UNI-1]
gi|319995214|dbj|BAJ63985.1| putative ribonuclease [Anaerolinea thermophila UNI-1]
Length = 608
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 174/348 (50%), Gaps = 38/348 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLTHL +AID ++ DDA+S +GRI ++H+ADP I P + +D++A R
Sbjct: 231 RKDLTHLLSFAIDDAGSEVPDDAIS---FDEGRI--WVHIADPAALILPDTQADREARAR 285
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S+ LP T M E A+ L + E+ A+++ + L G I + S ++
Sbjct: 286 GESLHLPEGTVHMLSED-AISKFGLGKQEISPALSIGICLSPSGEIQNVEIVPSRVR-VS 343
Query: 305 MLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
LTY++A L+ L E E L EA RL+ GA++ E R+KV +
Sbjct: 344 RLTYQNAEVLMDAPLFSEIEKWLGFHREA-------RLRHGAVELDLPEVRVKVDEHQKV 396
Query: 363 E--PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAF 418
E P+++L + R+V E M+L G AIA + N+ +P+ Q P+ +
Sbjct: 397 EIQPVLSLR-------SRRMVEEAMLLAGTAIAQWCIERNVPVPFTIQEAPEQRVSGDTL 449
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRK-PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
A + A+ + M+ + +R P H LGL YVQ TSP+RRY+DL+ H Q+++
Sbjct: 450 ADM-------YAMRRWMKRS--QYRSAPAEHAGLGLKFYVQGTSPLRRYLDLVVHQQIRS 500
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQP 525
LRGE LE + + + + R+ S ++W + +L + P
Sbjct: 501 FLRGEKLLSEQDILERIGEVEVLLPSL-RQAEILSEKHWTLVYLLQNP 547
>gi|434382944|ref|YP_006704727.1| ribonuclease R [Brachyspira pilosicoli WesB]
gi|404431593|emb|CCG57639.1| ribonuclease R [Brachyspira pilosicoli WesB]
Length = 659
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 165/334 (49%), Gaps = 44/334 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL ++ ID ++ + DDA+S +L DG K+ +H+AD + ++ GS D++A
Sbjct: 154 FDRIDLRDIRTVTIDGADSKDFDDAISVEKLNDG-YKIGVHIADVSFFVAEGSSLDREAR 212
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV + + + G+I E + S+IK
Sbjct: 213 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFITIDNKGNIKESTFHKSVIKS 272
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ L++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 273 SRRLTYDYAQDVLDGVEQDEDWLLELLKNADDIKKILLQKRIDNGSIEFNLNETQIILDK 332
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E M+L +A
Sbjct: 333 GGNPKD------FFIGERKE-THKIIEEFMLLANCEVAKRLKNIKGAIYRVHDSPDSEKL 385
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR + N+D +F P+ + + +++ MR A D +
Sbjct: 386 DTFRRIAFNRGYRLTSDTEGNLDFHSFIESIIGKPDEKLLLTLLLRSMRQAIYDINN-IG 444
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H LG Y FTSPIRRY DLL H +K L G
Sbjct: 445 HFGLGFEYYTHFTSPIRRYTDLLTHRLLKLSLEG 478
>gi|404475181|ref|YP_006706612.1| ribonuclease R [Brachyspira pilosicoli B2904]
gi|404436670|gb|AFR69864.1| ribonuclease R [Brachyspira pilosicoli B2904]
Length = 659
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 165/334 (49%), Gaps = 44/334 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL ++ ID ++ + DDA+S +L DG K+ +H+AD + ++ GS D++A
Sbjct: 154 FDRIDLRDIRTVTIDGADSKDFDDAISVEKLNDG-YKIGVHIADVSFFVAEGSALDREAR 212
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV + + + G+I E + S+IK
Sbjct: 213 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFITIDNKGNIKESTFHKSVIKS 272
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ L++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 273 SRRLTYDYAQDVLDGIEQDEDWLLELLKNADDIKKILLQKRIDNGSIEFNLNETQIILDK 332
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E M+L +A
Sbjct: 333 GGNPKD------FFIGERKE-THKIIEEFMLLANCEVAKRLKNIKGAIYRVHDSPDSEKL 385
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR + N+D +F P+ + + +++ MR A D +
Sbjct: 386 DTFRRIAFNRGYRLTTDNEGNLDFHSFIESIIGKPDEKLLLTLLLRSMRQAIYDINN-IG 444
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H LG Y FTSPIRRY DLL H +K L G
Sbjct: 445 HFGLGFEYYTHFTSPIRRYTDLLTHRLLKLSLEG 478
>gi|297544416|ref|YP_003676718.1| ribonuclease R [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
gi|296842191|gb|ADH60707.1| ribonuclease R [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
Length = 728
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 162/342 (47%), Gaps = 43/342 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ L R DLT+L ID ++A +LDDA+ +L DG +Y+ +AD + Y++ GS D
Sbjct: 238 EEELKRRVDLTNLNFVTIDGEDAKDLDDAVCVQKLSDGNYILYVSIADVSHYVKEGSHLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+KRG SV+ PM P KL+ SL E +TV + ++S G + ++ + S
Sbjct: 298 KEALKRGCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSKGEVVDHEIFES 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATL 350
IIK +TY + +LL N EE + KI+ E A + L+ R ++G++D
Sbjct: 358 IIKSKERMTYTNVYKLLEENHEELKKRYQYLLEDFKIMKELALVLLEKRKRRGSVDFDFP 417
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V P I+ + + + A R++ E M+ E +A + + N+ YR
Sbjct: 418 EAKVIVDEKGRPIDIVKV----ERNIAHRIIEEFMLAANETVAEHMHWLNVPFVYRIHEH 473
Query: 411 SNID----VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR----- 443
+I+ + F H + G + ++ +++R + R
Sbjct: 474 PDIEKLIAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRA 533
Query: 444 ----KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ + H L Y FTSPIRRY DL+ H +K + G
Sbjct: 534 RYSPEDIGHYALATQYYTHFTSPIRRYPDLIIHRIIKEYING 575
>gi|297568491|ref|YP_003689835.1| Exoribonuclease II [Desulfurivibrio alkaliphilus AHT2]
gi|296924406|gb|ADH85216.1| Exoribonuclease II [Desulfurivibrio alkaliphilus AHT2]
Length = 682
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 188/411 (45%), Gaps = 20/411 (4%)
Query: 180 DNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
D LL R DL HL V ID +LDDAL R Q V IH+AD Y++PGSL
Sbjct: 286 DTLLAQGRVDLRHLPVLTIDGKSTRDLDDALHLER-QGENFVVGIHIADVAHYVKPGSLL 344
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
K A++R TS++ P PM P +L+ + SL G A++ V L DG I +
Sbjct: 345 FKTAVERVTSLYFPEGQVPMLPPRLSEDLCSLVAGRDRPAMSFLVTLTPDGDIVSSRIVA 404
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S+I+ L YE +LL + + + +L+ + ALR + R++ GA+ + I +
Sbjct: 405 SVIRVARRLDYEQVEQLLPADSDLQ---NLLTLSQALRRR-RIEAGALLLPIPDVNISID 460
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA 417
+PE + +ED PA LVSEMM+L A Y + + +R Q +
Sbjct: 461 ERGNPE----VSLEDVDIPARLLVSEMMVLANMLAAEYVAQQQVPGLFRSQDDPH---QR 513
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
H E + + + +P RH +G Y TSPIRR +DL +QV
Sbjct: 514 LVHGYEQDIFTIWRQRKQLKPGQLLTRPERHSGVGAASYTTITSPIRRLLDLAMQHQVHG 573
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
+ + + L + + +N ++ RYW++++L+ + R L++
Sbjct: 574 LIARQGAVLAEPDLMDLVAAINTTQGRLNQVKRERQRYWLLKYLQSKVG-RWLDVLVVAR 632
Query: 538 IKDRTAALL---LVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 585
R +L L+E L VSV + GD V VK+ +A P D + L+
Sbjct: 633 GPRRVTVVLTDCLLEGDLPPGRGVSV--EPGDVVAVKIAKADPLDGTLRLE 681
>gi|347541991|ref|YP_004856627.1| ribonuclease R [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985026|dbj|BAK80701.1| ribonuclease R [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 696
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 169/339 (49%), Gaps = 44/339 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDG-RIKVYIHVADPTKYIEPGSLS 237
ED+ NR+DL +L + ID +A +LDDA+ + DG K+ +H+AD + Y++ GS
Sbjct: 232 EDDFTNRRDLRNLSIVTIDGSDAKDLDDAVYVKK--DGENYKLSVHIADVSHYVKYGSKL 289
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+KRGTSV+L PM P++L+ + SL G ++ +V++S G + Y +
Sbjct: 290 DREALKRGTSVYLIDKVIPMLPKELSNDLCSLNSGTDKLTLSCEMVINSFGEVISYDIFE 349
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETR 353
S+I+ Y LTY++ +++ E +++ + + A + + R ++G+I+ E +
Sbjct: 350 SVIRTKYRLTYDNVQDIIDGKTHEFSDIHDMIFNMKDLAEILNEKRERRGSINFDFPECK 409
Query: 354 IKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
I + ED + + I+ +V + +++ E M+LC E IA + F N PYR + +
Sbjct: 410 ISLN--EDGDILDISAFVR---KFSHKIIEEFMLLCNETIAEHMFFLNYPFPYRIHEEPD 464
Query: 413 ID------------------------------VSAFAHLPEGPVRSSAIVKIMRAAAIDF 442
++ +S F E S I++ M A
Sbjct: 465 MEKIMNLINILHNLNYNLRVNDKVYSNQIQKVLSHFKGRDEEMFLSKFILRSMSKARY-L 523
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
++ + H L Y FTSPIRRY DL+AH +K L+G
Sbjct: 524 KECMGHFGLSTKYYCHFTSPIRRYPDLVAHRIIKLSLKG 562
>gi|431808689|ref|YP_007235587.1| ribonuclease R [Brachyspira pilosicoli P43/6/78]
gi|430782048|gb|AGA67332.1| ribonuclease R [Brachyspira pilosicoli P43/6/78]
Length = 654
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 166/334 (49%), Gaps = 44/334 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL +++ ID ++ + DDA+S +L DG K+ +H+AD + ++ GS D++A
Sbjct: 149 FDRIDLRNIRTVTIDGADSKDFDDAISVEKLNDG-YKIGVHIADVSFFVAEGSALDREAR 207
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV + + + G+I E + S+IK
Sbjct: 208 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFITIDNKGNIKESTFHKSVIKS 267
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ L++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 268 SRRLTYDYAQDVLDGIEQDEDWLLELLKNADDIKKILLQKRIDNGSIEFNLNETQIILDK 327
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E M+L +A
Sbjct: 328 GGNPKD------FFIGERKE-THKIIEEFMLLANCEVAKRLKNIKGAIYRVHDSPDSEKL 380
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR + N+D +F P+ + + +++ M+ A D +
Sbjct: 381 DTFRRIAFNRGYRLTTDNEGNLDFHSFIESIIGKPDEKLLLTLLLRSMKQAIYDINN-IG 439
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H LG Y FTSPIRRY DLL H +K L G
Sbjct: 440 HFGLGFEYYTHFTSPIRRYTDLLTHRLLKLSLEG 473
>gi|429124613|ref|ZP_19185145.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
hampsonii 30446]
gi|426279386|gb|EKV56409.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
hampsonii 30446]
Length = 661
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 167/334 (50%), Gaps = 44/334 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL ++K ID ++ + DDA+S +L DG K+ IH+AD + ++ GS D++A
Sbjct: 152 FDRIDLRNIKTVTIDGADSKDFDDAISIEKLNDG-YKLGIHIADVSHFVVMGSALDREAR 210
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV V + + G+I E + S+IK
Sbjct: 211 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNKGNIKESTFHKSVIKS 270
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ +++L A ++ LQ R++ G+I+ ET+I K
Sbjct: 271 SRRLTYDYAQDVLDGIEQDEDWLVELLKNADDVKKILLQKRIENGSIEFNLNETQIILDK 330
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E+M++ +A
Sbjct: 331 GGNPKD------FFIGERKE-THKIIEELMLIANCEVAKKLKNIKGSIYRVHDSPDMEKL 383
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR N+D +F P+ + + +++ M+ A D +
Sbjct: 384 DTFTRIAFNRGYRLTKDADGNLDFHSFIQSIMGKPDEKLLLTLLLRSMKQAIYDVNN-IG 442
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H LG Y FTSPIRRY DLL H +K L G
Sbjct: 443 HFGLGFEYYTHFTSPIRRYTDLLTHRLLKLSLEG 476
>gi|300870479|ref|YP_003785350.1| ribonuclease R [Brachyspira pilosicoli 95/1000]
gi|300688178|gb|ADK30849.1| ribonuclease R [Brachyspira pilosicoli 95/1000]
Length = 654
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 166/334 (49%), Gaps = 44/334 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL +++ ID ++ + DDA+S +L DG K+ +H+AD + ++ GS D++A
Sbjct: 149 FDRIDLRNIRTVTIDGADSKDFDDAISVEKLNDG-YKIGVHIADVSFFVAEGSALDREAR 207
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV + + + G+I E + S+IK
Sbjct: 208 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFITIDNKGNIKESTFHKSVIKS 267
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ L++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 268 SRRLTYDYAQDVLDGIEQDEDWLLELLKNADDIKKILLQKRIDNGSIEFNLNETQIILDK 327
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E M+L +A
Sbjct: 328 GGNPKD------FFIGERKE-THKIIEEFMLLANCEVAKRLKNIKGAIYRVHDSPDSEKL 380
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR + N+D +F P+ + + +++ M+ A D +
Sbjct: 381 DTFRRIAFNRGYRLTTDNEGNLDFHSFIESIIGKPDEKLLLTLLLRSMKQAIYDINN-IG 439
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H LG Y FTSPIRRY DLL H +K L G
Sbjct: 440 HFGLGFEYYTHFTSPIRRYTDLLTHRLLKLSLEG 473
>gi|326800487|ref|YP_004318306.1| ribonuclease R [Sphingobacterium sp. 21]
gi|326551251|gb|ADZ79636.1| ribonuclease R [Sphingobacterium sp. 21]
Length = 711
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 121/453 (26%), Positives = 197/453 (43%), Gaps = 57/453 (12%)
Query: 120 KDSDRVLLAVAQRPDGKKN------WMVYDQNGASCSIKPQQVTFVVP-----GVEKFDH 168
KD D+V++ + P G KN ++ Q + + F P VE+
Sbjct: 184 KDQDKVVVTITDWPQGSKNPVGRVKHVLGKQGENNTEMNAILADFGFPLAFPTAVEQEAD 243
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
K I + E + RKD + + ID +A + DDA+S ++ DG +V +H+AD T
Sbjct: 244 K-IEEVISPVE--ISRRKDFRSVLTFTIDPADAKDFDDAISFRKMPDGNYEVGVHIADVT 300
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
Y++P S DK+A +RGTSV+L PM PE+L+ SLR E + ++
Sbjct: 301 HYVQPDSALDKEAYERGTSVYLVDRVIPMLPERLSNNLCSLRPNEDKLCFSAVFIIDDQA 360
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEE--AELKILSEAAALRLQWRLQQGAID 346
+ E +II TYE A E++ N E + EL IL++ A + + +QGAI+
Sbjct: 361 HVKEQWFGRTIIHSDRRFTYEEAQEIIE-NKEGQFSEELLILNKLAYILRDRKFKQGAIN 419
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNL 401
+ E + K+ E+ +P + +Y +++ D A +L+ + M+L +A + N L
Sbjct: 420 FESTEVKFKL--DENGKP-LGVYTKERKD-AHKLIEDFMLLANRKVAEFIGKQGKGKNKL 475
Query: 402 ALPYRGQPQSNID---------------------------VSAFAHLPEGPVRSSAIVKI 434
YR N + ++A H EG + + +
Sbjct: 476 PFVYRSHDAPNEESLASFAQFAARFGYKVSTKSEKEIAKSLNALMHDVEGTKEQNVLTTL 535
Query: 435 M---RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQL 491
A AI K H L Y FTSPIRRY D++ H ++ A + +
Sbjct: 536 AIRSMAKAIYTTKKHSHYGLAFDYYTHFTSPIRRYPDVMVH-RLLAHYLADGKAVNEEMY 594
Query: 492 EGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQ 524
E M + + + A TS++Y EFL+ Q
Sbjct: 595 EKMCTHASQMEKKAADAERTSVKYKQAEFLQDQ 627
>gi|325283960|ref|YP_004256501.1| ribonuclease II [Deinococcus proteolyticus MRP]
gi|324315769|gb|ADY26884.1| ribonuclease II [Deinococcus proteolyticus MRP]
Length = 481
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 191/394 (48%), Gaps = 32/394 (8%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL +AID + + DDALS L++G ++++HVAD + PGS D++A
Sbjct: 100 ERLDLTHLPAFAIDDEGNQDPDDALSVEELEEGLTRLWVHVADVAALVTPGSPLDREARA 159
Query: 244 RGTSVFLPTATYPMFPEKLAME-GMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
RG +++LP T M PE L + G+ L + A+++++ L ++G+ V + ++
Sbjct: 160 RGATLYLPDRTIHMLPEALVQQAGLGL--SDTSPALSIALDLDANGNADAVEVHLTRVR- 216
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
L+Y A + + +E L+E A + R Q+GA+ E R+K
Sbjct: 217 VQRLSYGQAQAMFE---QGHSEFTRLAELAGVSRDIRSQEGAVSIDLPEVRVKAD----- 268
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
V P MR +V E M L G A A Y L +P+ Q + +VS +
Sbjct: 269 --AAGAQVLPLPRPEMRAVVQECMTLAGWAAAIYADDFELPIPFATQDPPHREVSGDSMT 326
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
R + ++A P H +GL Y Q TSP+RRY+DL+ H Q++A L G
Sbjct: 327 AHWARRKTLARTRFQSA------PGAHAGMGLDLYTQATSPMRRYLDLVVHQQLRAHLSG 380
Query: 482 ESPPFSAGQLEGM---ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
+ P S ++ A I + TR A RLS R+ + ++ QP ER + A+++
Sbjct: 381 -AEPMSGREVAAHIAEAGIGSASTRTAERLSR---RHHTLRYIAAQP-ERIWDAVVVE-K 434
Query: 539 KDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKV 572
+ A LL+ ++ L ++ A G E++V++
Sbjct: 435 RGPQATLLIPDLALDLP--MTTPATPGKELKVRL 466
>gi|289578141|ref|YP_003476768.1| ribonuclease R [Thermoanaerobacter italicus Ab9]
gi|289527854|gb|ADD02206.1| ribonuclease R [Thermoanaerobacter italicus Ab9]
Length = 728
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 162/343 (47%), Gaps = 43/343 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E L R DLT+L ID ++A +LDDA+ +L DG +Y+ +AD + Y++ GS D
Sbjct: 238 EGELKRRVDLTNLNFVTIDGEDAKDLDDAVCVQKLSDGNYILYVSIADVSHYVKEGSHLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+KRG SV+ PM P KL+ SL E +TV + ++S G + ++ + S
Sbjct: 298 KEALKRGCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFES 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATL 350
IIK +TY + +LL N EE + KI+ E A + L+ R ++G++D
Sbjct: 358 IIKSKERMTYTNVYKLLEENDEELKKRYQYLLEDFKIMKELAQVLLEKRKRRGSVDFDFP 417
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V P II + + + A R++ E M+ E +A + + N+ YR
Sbjct: 418 EAKVIVDEKGRPIDIIKV----ERNIAHRIIEEFMLAANETVAEHMHWLNVPFVYRIHEH 473
Query: 411 SNID----VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR----- 443
+I+ + F H + G + ++ ++++ + R
Sbjct: 474 PDIEKLIAFNKFIHNLGYHIKGIEGGQIHPKSLQELIKQVRGKSEQRVVETLLLRSLKRA 533
Query: 444 ----KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ + H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 534 RYSPEDIGHYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGK 576
>gi|296125474|ref|YP_003632726.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
murdochii DSM 12563]
gi|296017290|gb|ADG70527.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
murdochii DSM 12563]
Length = 665
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 167/334 (50%), Gaps = 44/334 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL +++ ID ++ + DDA+S +L DG K+ IH+AD + ++ GS D++A
Sbjct: 154 FDRIDLRNIRTVTIDGADSKDFDDAISIEKLNDG-YKLGIHIADVSHFVVMGSALDREAR 212
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV V + ++G++ E + S+IK
Sbjct: 213 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNNGNVKESTFHKSVIKS 272
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
LTY+ A ++L + +E+ +++L A ++ LQ R++ G+I+ ET+I K
Sbjct: 273 DRRLTYDYAQDVLDGIEQDEDWLIELLKNADDVKKILLQKRIENGSIEFNLNETQIILDK 332
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--------------------Y 395
NP+D ++ ++ + +++ E+M++ +A
Sbjct: 333 GGNPKD------FFIGERKE-THKIIEELMLIANCEVAKRLKNIKGSIYRVHDSPDIEKL 385
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR N+D +F P+ + + +++ M+ A D +
Sbjct: 386 DTFTRIAFNRGYRLTKDADGNLDFHSFIESIMGKPDEKLLLTLLLRSMKQAIYDVNN-IG 444
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H LG Y FTSPIRRY DLL H +K L G
Sbjct: 445 HFGLGFEYYTHFTSPIRRYTDLLTHRLLKLSLEG 478
>gi|308274105|emb|CBX30704.1| hypothetical protein N47_E42160 [uncultured Desulfobacterium sp.]
Length = 663
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 191/403 (47%), Gaps = 23/403 (5%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT L V ID + DDA+S + + G + IH+AD +++ G D +A+ R
Sbjct: 274 RKDLTDLLVITIDGQSTLDFDDAIS-IEDKGGYYSLGIHIADVAHFVKKGDPVDSEAIIR 332
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S+++P PM P +A E SL++G++ ++V V + I +Y + S+++
Sbjct: 333 ASSIYMPDHKIPMLPAVIAEEVCSLKEGQIRPCISVMVKIRPTADIIDYDIFPSLVRVKR 392
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
+TY A + +++ E+ +L + A + RL GA+ + + V D
Sbjct: 393 QMTYYDANTV----VDDNKEIAVLYDLAKKFRRARLDSGAVYITMPDINVWV----DENR 444
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
+I L ++ P ++SE+MI+ +A + + NN +R QP A L G
Sbjct: 445 VITLNKINRESPGRMMISEIMIMANWLMAKFLAENNTPAVFRAQP------DAKQRLYRG 498
Query: 425 PVRSSAIVKIMRAAAIDFR---KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
S + R F P RH LGL YV TSPIR+Y DL+ Q++A G
Sbjct: 499 ENGSLFQNYMQRRLLSRFNLGSVPERHAGLGLNCYVTATSPIRKYYDLITQRQIRAIC-G 557
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
P ++ ++ + +V L + RYW++++L + +++ A++L + R
Sbjct: 558 LDTPHTSEEINKIIQLVEQPMANVLSLQSRRNRYWLLKYLESRTGQKE-EAIVLG-KRRR 615
Query: 542 TAALLLVEVGLQAAAWVSVGAQIG--DEVEVKVEEAHPRDDII 582
+ +L+ E ++ S G + D ++V + + R D++
Sbjct: 616 SYQILIPEYMIECELPSSSGIDLKPEDLIQVTIMHVNARRDVL 658
>gi|445062663|ref|ZP_21375014.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
hampsonii 30599]
gi|444505974|gb|ELV06385.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
hampsonii 30599]
Length = 662
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 166/335 (49%), Gaps = 46/335 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL +K ID ++ + DDA+S +L DG K+ IH+AD + ++ GS D++A
Sbjct: 153 FDRIDLRDIKTVTIDGADSKDFDDAISIEKLNDG-YKLGIHIADVSHFVVMGSALDREAR 211
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV V + + G++ E + S+IK
Sbjct: 212 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNIGNVKESTFHKSVIKS 271
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ +++L A ++ LQ R++ G+I+ ET+I K
Sbjct: 272 SRRLTYDYAQDVLDGIEQDEDWLIELLKNADDVKKILLQKRIENGSIEFNLNETQIILDK 331
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E+M++ +A
Sbjct: 332 GGNPKD------FFISERKE-THKIIEELMLIANCEVAKRLKNIKGSIYRVHDSPDIEKL 384
Query: 396 GSFNNLALPYRG-----QPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPV 446
+F +A RG N+D +F P+ + + +++ M+ A D +
Sbjct: 385 DTFTRIAFN-RGYKLTKDADGNLDFHSFIESIMGKPDEKLLLTLLLRSMKQAVYDVNN-I 442
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H LG Y FTSPIRRY DLL H +K L G
Sbjct: 443 GHFGLGFEYYTHFTSPIRRYTDLLTHRLLKFSLEG 477
>gi|338706754|ref|YP_004673522.1| putative exoribonuclease II [Treponema paraluiscuniculi Cuniculi A]
gi|335344815|gb|AEH40731.1| probable exoribonuclease II [Treponema paraluiscuniculi Cuniculi A]
Length = 700
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 187/407 (45%), Gaps = 44/407 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D THL YAID + + DDA+S DG +IHVA P + + P S +D A R
Sbjct: 273 RTDCTHLAAYAIDGEGTRDPDDAISF----DG-TYFWIHVASPAELVLPDSHADACARTR 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S++LP M + + ++ +L + V A++ ++L G I+ V S+++ T
Sbjct: 328 GASLYLPEGAVRMLSD-VVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTR 386
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP----- 359
+ E+ ++ + L+ L + A + R +GA+D + +KV P
Sbjct: 387 LSYAEADSQ------RDTPALQPLFDFARNNIARRKGRGAVDICFPDVHMKVDFPVQETG 440
Query: 360 ------------EDPEPIINLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + +++E Q+ +M +V E M+L GEA A + +NLA PY
Sbjct: 441 QAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPYV 500
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY 466
Q + + V LP G + M+A + V H LGL Y Q TSP+RRY
Sbjct: 501 SQERPQLPVQ----LPAGLAGEYKKRRAMKARRVSTTAAV-HAALGLSQYSQVTSPLRRY 555
Query: 467 MDLLAHYQVKACL---RGESPPFSAGQLEGMASIVNMQ----TRIARRLSNTSLRYWIIE 519
+DLLAH Q+ AC+ ++P + Q ++ Q R A + S R+W +
Sbjct: 556 VDLLAHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAARQATQAERVSRRHWTLV 615
Query: 520 FLRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGD 566
+ P R Y A++L ++ R A + L V L+A + AQ +
Sbjct: 616 YFLMHPHTR-YEAIVLEPLQPR-AHVWLPAVALEADVALGRQAQFNE 660
>gi|294507542|ref|YP_003571600.1| ribonuclease R [Salinibacter ruber M8]
gi|294343870|emb|CBH24648.1| ribonuclease R [Salinibacter ruber M8]
Length = 666
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 165/352 (46%), Gaps = 50/352 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
ED + R+DL V+ ID +A + DDA+ L +G +V +H+AD + Y+EP + D
Sbjct: 197 EDEIERRRDLRDKPVFTIDPVDAKDFDDAIHVEELDNGNYEVGVHIADVSHYVEPDTAID 256
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A++RGTSV+L T PM PEKL+ + SLR E A ++ + L ++G + +Y + +
Sbjct: 257 AEALERGTSVYLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSILMELTTEGDVVDYEICET 316
Query: 299 IIKPTYMLTYESATELLHLNLEEE---AELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+I LTY+ A + + ++ A++ + A + R+Q+GAID + E +
Sbjct: 317 VIHSKERLTYDRAQDYIEGGYPDDKMAADVVQANRLAKTITRRRMQEGAIDFGSDEVNVI 376
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------------GSFNNLA 402
+ + P I V + A RL+ E M+L +A + G+ L
Sbjct: 377 LDDDGTPTNI----VRKERLQANRLIEEFMLLANRTVAKHIAAPEHVDRHRSNGTDEPLP 432
Query: 403 LPYRGQPQSNID--------VSAFAH---LPEGPVRSS---AIVK----------IMRAA 438
YR + + V F H L +G RSS A++ I+RAA
Sbjct: 433 FVYRVHDSPDSEEIQQLAEYVRVFDHELPLTDGNARSSDLGALIDEVQGQPEEQVIVRAA 492
Query: 439 AIDFRKP------VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K + H LG Y FTSPIRRY DL+ H +K +G SP
Sbjct: 493 LRAMSKAEYAVGNIGHYGLGFDYYSHFTSPIRRYPDLMVHRLLKRYAKGGSP 544
>gi|83815922|ref|YP_445650.1| ribonuclease R [Salinibacter ruber DSM 13855]
gi|83757316|gb|ABC45429.1| ribonuclease R [Salinibacter ruber DSM 13855]
Length = 666
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 165/352 (46%), Gaps = 50/352 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
ED + R+DL V+ ID +A + DDA+ L +G +V +H+AD + Y+EP + D
Sbjct: 197 EDEIERRRDLRDKPVFTIDPVDAKDFDDAVHVEELDNGNYEVGVHIADVSHYVEPDTAID 256
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A++RGTSV+L T PM PEKL+ + SLR E A ++ + L ++G + +Y + +
Sbjct: 257 AEALERGTSVYLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSILMELTTEGDVVDYEICET 316
Query: 299 IIKPTYMLTYESATELLHLNLEEE---AELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+I LTY+ A + + ++ A++ + A + R+Q+GAID + E +
Sbjct: 317 VIHSKERLTYDRAQDYIEGGYPDDKMAADVVQANRLAKTITRRRMQEGAIDFGSDEVNVI 376
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------------GSFNNLA 402
+ + P I V + A RL+ E M+L +A + G+ L
Sbjct: 377 LDDDGTPTNI----VRKERLQANRLIEEFMLLANRTVAKHIAAPEHVDRHRSNGTDEPLP 432
Query: 403 LPYRGQPQSNID--------VSAFAH---LPEGPVRSS---AIVK----------IMRAA 438
YR + + V F H L +G RSS A++ I+RAA
Sbjct: 433 FVYRVHDSPDSEEIQQLAEYVRVFDHELPLTDGNARSSDLGALIDEVQGQPEEQVIVRAA 492
Query: 439 AIDFRKP------VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K + H LG Y FTSPIRRY DL+ H +K +G SP
Sbjct: 493 LRAMSKAEYAVGNIGHYGLGFDYYSHFTSPIRRYPDLMVHRLLKRYAKGGSP 544
>gi|320103846|ref|YP_004179437.1| VacB and RNase II family 3'-5' exoribonuclease [Isosphaera pallida
ATCC 43644]
gi|319751128|gb|ADV62888.1| VacB and RNase II family 3'-5' exoribonuclease [Isosphaera pallida
ATCC 43644]
Length = 826
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 166/385 (43%), Gaps = 40/385 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL HL ID +A + DDA+S R G + +HVAD + + PGS D +A R
Sbjct: 318 RHDLRHLPTVTIDPVDARDFDDAISLERDARGHWTLRVHVADVSALVAPGSPMDVEARAR 377
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+LP PM PE L+ SL+ GE AVTV++ L +G + + I+
Sbjct: 378 GTSVYLPDRVLPMLPEALSNGIASLQPGEERQAVTVTLDLTPEGIVTAAQFARTWIRVDR 437
Query: 305 MLTYESATELL--------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
TYE A ++ L E L + E A + R ++GA++ ET++ +
Sbjct: 438 RFTYEEAHAIMTNAFDAPEDLAEEHRTLLMQMLELAMILRDRRFRRGALELTMPETKLLL 497
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------------------GSF 398
+D + +E D + +++ E M+ EA+A Y
Sbjct: 498 ---DDQGKVAGARLESH-DESHQVIEEFMLAANEAVANYLAQHEVPFLRRCHEDPDPAKL 553
Query: 399 NNLALPYRG------QPQSNIDVS-AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVL 451
+ A RG QPQS ++ P+R + ++R+ P G
Sbjct: 554 DQFAEFVRGLGLTLDQPQSRSELQRVLDQTASTPLRHAVHYALLRSLKQATYTPESEGHY 613
Query: 452 GLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLS 509
L Y FTSPIRRY DLL H Q+ A + G P GQLE +A N R A
Sbjct: 614 ALASREYCHFTSPIRRYPDLLVHRQLTALIEGRRPMDDQGQLEALADHCNKTERRAEAAE 673
Query: 510 NTSLRYWIIEFLRRQPKERQYRALI 534
+R ++ L R+Y A++
Sbjct: 674 RDLIRLKMLNLLSDH-VGREYHAIV 697
>gi|325294704|ref|YP_004281218.1| ribonuclease R [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065152|gb|ADY73159.1| ribonuclease R [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 704
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 155/341 (45%), Gaps = 41/341 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E++L R DL + ID + A + DDA++ +L DG K+Y+H+AD + Y++PGS D
Sbjct: 235 EEDLKGRVDLREQLCFTIDGENARDFDDAVAIEKLSDGNYKLYVHIADVSHYVKPGSALD 294
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A KRGTSV+ P PM PEKL+ SL T +V++ G + +Y + S
Sbjct: 295 REAYKRGTSVYFPDRCIPMLPEKLSNGICSLNPNVDRLTFTCEMVINKKGIVVDYKIYES 354
Query: 299 IIKPTYMLTYESATELLHLNLEE-------EAELKILSEAAALRLQWRLQQGAIDTATLE 351
+I LTY A +++ + E LK + E A + + R ++G++D E
Sbjct: 355 VIHSKARLTYTIAQKIIDGDKEAIDKFPHVVESLKTMYELAQILYKKRYKRGSLDFDLPE 414
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG---- 407
+ ++ +P I++Y ++ A R++ E MI E +A Y + + YR
Sbjct: 415 PVVVLSTEGEP---IDIYRAERL-WAHRIIEEFMIAANETVAEYMFWTDYPSVYRIHESP 470
Query: 408 -----QPQSNIDVSAFAHLP------------------EGPVRSSAIVKIM-RAAAIDFR 443
Q N S +P EG + +M R A
Sbjct: 471 DREKLQEFLNFVRSLGIRVPSVKNDIQPKMLQKILEEVEGKSEEKLVNYLMLRTMARAKY 530
Query: 444 KPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGE 482
P G GL Y FTSPIRRY DL H QVK L GE
Sbjct: 531 SPDNVGHFGLASTYYTHFTSPIRRYADLQLHRQVKMALNGE 571
>gi|301336862|ref|ZP_07225064.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum MopnTet14]
Length = 692
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 178/404 (44%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDQEAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ L IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKLAHPISKTILEMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P + VE++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVAL----VENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 R-GQPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + ++ F A P P+ S V+ M
Sbjct: 423 RIHEPPNEENLLLFRETAKAMGFTITQTPTQEPDYQYLLQETSAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E G LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----GHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q R+A + N ++ +FL QP Y+A I+
Sbjct: 537 RACSSQERVAAKAEGAFINIKKARFLKKFLDEQPATL-YKAFII 579
>gi|378973318|ref|YP_005221924.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378974385|ref|YP_005222993.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378982294|ref|YP_005230601.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374677643|gb|AEZ57936.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678713|gb|AEZ59005.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679782|gb|AEZ60073.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. Gauthier]
Length = 700
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 187/407 (45%), Gaps = 44/407 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D THL YAID + + DDA+S DG +IHVA P + + P S +D A R
Sbjct: 273 RTDCTHLAAYAIDGEGTRDPDDAISF----DG-TYFWIHVASPAELVLPDSHADACARTR 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S++LP M + + ++ +L + V A++ ++L G I+ V S+++ T
Sbjct: 328 GASLYLPEGAVRMLSD-VVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTR 386
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP----- 359
+ E+ ++ + L+ L + A + R +GA+D + ++V P
Sbjct: 387 LSYAEADSQ------RDTPALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETG 440
Query: 360 ------------EDPEPIINLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + +++E Q+ +M +V E M+L GEA A + +NLA PY
Sbjct: 441 QAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPYV 500
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY 466
Q + + V LP G + M+A + V H LGL Y Q TSP+RRY
Sbjct: 501 SQERPQLPVQ----LPAGLAGEYKKRRAMKARRVSTTAAV-HAALGLSQYSQVTSPLRRY 555
Query: 467 MDLLAHYQVKACL---RGESPPFSAGQLEGMASIVNMQ----TRIARRLSNTSLRYWIIE 519
+DLLAH Q+ AC+ ++P + Q ++ Q R A + S R+W +
Sbjct: 556 VDLLAHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAARQATQAERVSRRHWTLV 615
Query: 520 FLRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGD 566
+ P R Y A++L ++ R A + L V L+A + AQ +
Sbjct: 616 YFLMHPHTR-YEAIVLEPLQPR-AHVWLPAVALEADVALGRQAQFNE 660
>gi|15835291|ref|NP_297050.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg]
gi|270285465|ref|ZP_06194859.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg]
gi|270289476|ref|ZP_06195778.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Weiss]
gi|14195179|sp|Q9PK00.1|RNR_CHLMU RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|8163286|gb|AAF73588.1| exoribonuclease, VacB/Rnb family [Chlamydia muridarum Nigg]
Length = 692
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 178/404 (44%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDQEAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ L IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKLAHPISKTILEMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P + VE++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVAL----VENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 R-GQPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + ++ F A P P+ S V+ M
Sbjct: 423 RIHEPPNEENLLLFRETAKAMGFTITQTPTQEPDYQYLLQETSAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E G LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----GHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q R+A + N ++ +FL QP Y+A I+
Sbjct: 537 RACSSQERVAAKAEGAFINIKKARFLKKFLDEQPATL-YKAFII 579
>gi|386811956|ref|ZP_10099181.1| ribonuclease [planctomycete KSU-1]
gi|386404226|dbj|GAB62062.1| ribonuclease [planctomycete KSU-1]
Length = 722
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 167/351 (47%), Gaps = 47/351 (13%)
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
K I +++ + E +R DL + ID ++A + DDA+S + + G + +H+AD +
Sbjct: 241 KHIPHYVSQEETG--DRLDLRKNLMITIDPEDAKDFDDAVSLEKNKHGNWLLGVHIADVS 298
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
Y++P + D +A RGTSV+LP PM PE L+ SLR+GE +V + L G
Sbjct: 299 HYVKPDTAIDDEARYRGTSVYLPGEVIPMLPEVLSNNICSLREGEDRLTKSVLITLDHRG 358
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLH----LNLEEEAE--LKILSEAAALRLQWRLQQ 342
+ + + +SIIK T LTY AT +L+ + + ++A L+ ++ A L + RL +
Sbjct: 359 HLIKAEIKHSIIKVTKRLTYNQATAILNNENTIRIADDAADMLRNMAHLAQLLFENRLNR 418
Query: 343 GAIDTATLETRIKVANPEDPEPIINLYVED----QADPAMRLVSEMMILCGEAIATYGSF 398
GAI+ E +K+ + + YV+D + D + +L+ E M+L E +AT+
Sbjct: 419 GAIELDLPEVSLKLDD--------HGYVKDVEKVEKDISHKLIEECMLLANETVATFMFE 470
Query: 399 NNLALPYRGQPQSN-IDVSAFAHLPEG-------PVRSSAIVKIMR-------------- 436
+ L R P+ + D+ FA G P +S + K++
Sbjct: 471 KKMPLLCRTHPEPDEEDMWEFASFIRGLEQTKIDPFKSKQLQKLLDKIRGKPEAYTINLV 530
Query: 437 -----AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
AI RH L L Y FTSPIRRY DL+ H + GE
Sbjct: 531 LLKSMKQAIYAAGEGRHFALALDHYTHFTSPIRRYPDLIVHRILDQYFSGE 581
>gi|408502659|ref|YP_006870103.1| putative exoribonuclease II [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|408476022|gb|AFU66787.1| putative exoribonuclease II [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 701
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 187/407 (45%), Gaps = 44/407 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D THL YAID + + DDA+S DG +IHVA P + + P S +D A R
Sbjct: 274 RTDCTHLAAYAIDGEGTRDPDDAISF----DG-TYFWIHVASPAELVLPDSHADACARTR 328
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S++LP M + + ++ +L + V A++ ++L G I+ V S+++ T
Sbjct: 329 GASLYLPEGAVRMLSD-VVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTR 387
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP----- 359
+ E+ ++ + L+ L + A + R +GA+D + ++V P
Sbjct: 388 LSYAEADSQ------RDTPALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETG 441
Query: 360 ------------EDPEPIINLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + +++E Q+ +M +V E M+L GEA A + +NLA PY
Sbjct: 442 QAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPYV 501
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY 466
Q + + V LP G + M+A + V H LGL Y Q TSP+RRY
Sbjct: 502 SQERPQLPVQ----LPAGLAGEYKKRRAMKARRVSTTAAV-HAALGLSQYSQVTSPLRRY 556
Query: 467 MDLLAHYQVKACL---RGESPPFSAGQLEGMASIVNMQ----TRIARRLSNTSLRYWIIE 519
+DLLAH Q+ AC+ ++P + Q ++ Q R A + S R+W +
Sbjct: 557 VDLLAHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAARQATQAERVSRRHWTLV 616
Query: 520 FLRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGD 566
+ P R Y A++L ++ R A + L V L+A + AQ +
Sbjct: 617 YFLMHPHTR-YEAIVLEPLQPR-AHVWLPAVALEADVALGRQAQFNE 661
>gi|256751960|ref|ZP_05492830.1| ribonuclease R [Thermoanaerobacter ethanolicus CCSD1]
gi|256749165|gb|EEU62199.1| ribonuclease R [Thermoanaerobacter ethanolicus CCSD1]
Length = 720
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 43/337 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L ID ++A +LDDA+ +LQDG +Y+ +AD + Y++ G DK+A+KR
Sbjct: 244 RVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P ++ + + + A R++ E M++ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPIDVVKV----ERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGK 576
>gi|378975443|ref|YP_005224053.1| putative exoribonuclease II [Treponema pallidum subsp. pallidum
DAL-1]
gi|374680843|gb|AEZ61133.1| putative exoribonuclease II [Treponema pallidum subsp. pallidum
DAL-1]
Length = 700
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 187/407 (45%), Gaps = 44/407 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D THL YAID + + DDA+S DG +IHVA P + + P S +D A R
Sbjct: 273 RTDCTHLAAYAIDGEGTRDPDDAISF----DG-TYFWIHVASPAELVLPDSHADACARTR 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S++LP M + + ++ +L + V A++ ++L G I+ V S+++ T
Sbjct: 328 GASLYLPEGAVRMLSD-VVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTR 386
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP----- 359
+ E+ ++ + L+ L + A + R +GA+D + ++V P
Sbjct: 387 LSYAEADSQ------RDTPALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETG 440
Query: 360 ------------EDPEPIINLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + +++E Q+ +M +V E M+L GEA A + +NLA PY
Sbjct: 441 QAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPYV 500
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY 466
Q + + V LP G + M+A + V H LGL Y Q TSP+RRY
Sbjct: 501 SQERPQLPVQ----LPAGLAGEYKKRRAMKARRVSTTAAV-HAALGLSQYSQVTSPLRRY 555
Query: 467 MDLLAHYQVKACL---RGESPPFSAGQLEGMASIVNMQ----TRIARRLSNTSLRYWIIE 519
+DLLAH Q+ AC+ ++P + Q ++ Q R A + S R+W +
Sbjct: 556 VDLLAHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAARQATQAERVSRRHWTLV 615
Query: 520 FLRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGD 566
+ P R Y A++L ++ R A + L V L+A + AQ +
Sbjct: 616 YFLMHPHTR-YEAIVLEPLQPR-AHVWLPAVALEADVALGRQAQFNE 660
>gi|320116181|ref|YP_004186340.1| ribonuclease R [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|319929272|gb|ADV79957.1| ribonuclease R [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 720
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 43/337 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L ID ++A +LDDA+ +LQDG +Y+ +AD + Y++ G DK+A+KR
Sbjct: 244 RVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P ++ + + + A R++ E M++ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPIDVVKV----ERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGK 576
>gi|374814267|ref|ZP_09718004.1| ribonuclease II family protein [Treponema primitia ZAS-1]
Length = 642
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 147/310 (47%), Gaps = 31/310 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL+ YAID +++ DDA+S + G +Y+H+ADP I PGS +D +A R
Sbjct: 238 RTDLTHLEAYAIDSPWSNDPDDAISLEKHPSGDT-LYVHIADPAASILPGSPADIEARGR 296
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSL-------------RQGEVCNAVTVSVVLHSDGSI 290
G +++LP M E L++ + L R G+ C A+T ++L DGSI
Sbjct: 297 GATLYLPEGAVRMLTDEALSLFALGLSDGPTPRTGQVCPRTGQACPALTFKLILGEDGSI 356
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
E + S+++ T L+Y A + E L LS A Q R+ GA+
Sbjct: 357 LETDIFPSLVRIT-RLSYAQA----DVTAGAETVLAGLSRVAERNKQRRIAAGAVMIDLP 411
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E I V + +I Y + V E M+L GE A + +L P+ Q
Sbjct: 412 EAHISVHEEKVAINLIETYKSAET------VRECMLLAGEGAARWALQRHLPFPFVSQET 465
Query: 411 SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLL 470
+ A LP G S + + MR + KP H LGL Y Q TSP+RRY DLL
Sbjct: 466 GELPT---APLP-GMAGSYQLRRCMRPRTLS-TKPGLHWGLGLEQYTQVTSPLRRYTDLL 520
Query: 471 AHYQVKACLR 480
AH Q++A L+
Sbjct: 521 AHQQIRAFLK 530
>gi|167039994|ref|YP_001662979.1| ribonuclease R [Thermoanaerobacter sp. X514]
gi|166854234|gb|ABY92643.1| ribonuclease R [Thermoanaerobacter sp. X514]
Length = 722
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 43/337 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L ID ++A +LDDA+ +LQDG +Y+ +AD + Y++ G DK+A+KR
Sbjct: 246 RVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 306 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 365
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 366 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P ++ + + + A R++ E M++ E +A + + N+ YR +I+
Sbjct: 426 DEKGKPIDVVKV----ERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKL 481
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 482 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 541
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 542 IGHYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGK 578
>gi|300914084|ref|ZP_07131400.1| ribonuclease R [Thermoanaerobacter sp. X561]
gi|307724683|ref|YP_003904434.1| ribonuclease R [Thermoanaerobacter sp. X513]
gi|300889019|gb|EFK84165.1| ribonuclease R [Thermoanaerobacter sp. X561]
gi|307581744|gb|ADN55143.1| ribonuclease R [Thermoanaerobacter sp. X513]
Length = 720
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 43/337 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L ID ++A +LDDA+ +LQDG +Y+ +AD + Y++ G DK+A+KR
Sbjct: 244 RVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P ++ + + + A R++ E M++ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPIDVVKV----ERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGK 576
>gi|451948993|ref|YP_007469588.1| exoribonuclease R [Desulfocapsa sulfexigens DSM 10523]
gi|451908341|gb|AGF79935.1| exoribonuclease R [Desulfocapsa sulfexigens DSM 10523]
Length = 668
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 170/383 (44%), Gaps = 29/383 (7%)
Query: 174 FLQKAEDNLLN---RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
LQ+ D L RKD T LK ID + DDAL+ +G + V +H++D Y
Sbjct: 263 LLQQGVDKLFQDPARKDFTDLKPITIDGSTTLDFDDALTVEAQDNGNVLVGVHISDVAHY 322
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+ P +AM+RGTS++ P PM P L+ SL QGE A++ ++L + +
Sbjct: 323 VRPEDPLFLEAMQRGTSIYFPEGQIPMLPRHLSQGICSLIQGEFRAAMSFMILLSDEAEV 382
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+ SIIK LTY+ A + ++ + EL IL++ RL GA+
Sbjct: 383 LRIRIYPSIIKVARRLTYDEADTM----IKTDPELAILNDLRIKLRNRRLDAGALLLPFP 438
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------GSFNNLAL 403
+ I V + + + + D P+ LVSEMMIL A Y G F
Sbjct: 439 DVNIHVHDGSK----VQVSLADTDTPSRTLVSEMMILANTQAARYVADRMAPGLFRAQK- 493
Query: 404 PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
P R + S +D F + S + R + +P H LG+ Y TSPI
Sbjct: 494 PPRRRVVSGLDNDLF-------LNSMQRKMLSRGELLINAQP--HSGLGVTQYTTITSPI 544
Query: 464 RRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRR 523
RR +DL+ +Q+ + +R + F+ + S++ A + RYW++++L
Sbjct: 545 RRLLDLVMQHQLHSLIRRQDIRFTEEMCKDFTSVIGRTLARANSVRQQRHRYWLLKYLET 604
Query: 524 QPKERQYRALILRFIKDRTAALL 546
+ +E AL L RT+ LL
Sbjct: 605 K-REHPLTALTLESGPKRTSLLL 626
>gi|15639792|ref|NP_219242.1| exoribonuclease II (rnb) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189026030|ref|YP_001933802.1| exoribonuclease II [Treponema pallidum subsp. pallidum SS14]
gi|3323115|gb|AAC65772.1| exoribonuclease II (rnb) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189018605|gb|ACD71223.1| exoribonuclease II [Treponema pallidum subsp. pallidum SS14]
Length = 759
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 187/407 (45%), Gaps = 44/407 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D THL YAID + + DDA+S DG +IHVA P + + P S +D A R
Sbjct: 274 RTDCTHLAAYAIDGEGTRDPDDAISF----DG-TYFWIHVASPAELVLPDSHADACARTR 328
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S++LP M + + ++ +L + V A++ ++L G I+ V S+++ T
Sbjct: 329 GRSLYLPEGAVRMLSD-VVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTR 387
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP----- 359
+ E+ ++ + L+ L + A + R +GA+D + ++V P
Sbjct: 388 LSYAEADSQ------RDTPALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETG 441
Query: 360 ------------EDPEPIINLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + +++E Q+ +M +V E M+L GEA A + +NLA PY
Sbjct: 442 QAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPYV 501
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY 466
Q + + V LP G + M+A + V H LGL Y Q TSP+RRY
Sbjct: 502 SQERPQLPVQ----LPAGLAGEYKKRRAMKARRVSTTAAV-HAALGLSQYSQVTSPLRRY 556
Query: 467 MDLLAHYQVKACL---RGESPPFSAGQLEGMASIVNMQ----TRIARRLSNTSLRYWIIE 519
+DLLAH Q+ AC+ ++P + Q ++ Q R A + S R+W +
Sbjct: 557 VDLLAHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAARQATQAERVSRRHWTLV 616
Query: 520 FLRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGD 566
+ P R Y A++L ++ R A + L V L+A + AQ +
Sbjct: 617 YFLMHPHTR-YEAIVLEPLQPR-AHVWLPAVALEADVALGRQAQFNE 661
>gi|167037766|ref|YP_001665344.1| ribonuclease R [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|166856600|gb|ABY95008.1| ribonuclease R [Thermoanaerobacter pseudethanolicus ATCC 33223]
Length = 722
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 43/337 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L ID ++A +LDDA+ +LQDG +Y+ +AD + Y++ G DK+A+KR
Sbjct: 246 RVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 306 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 365
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 366 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P ++ + + + A R++ E M++ E +A + + N+ YR +I+
Sbjct: 426 DEKGKPIDVVKV----ERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKL 481
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 482 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 541
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 542 IGHYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGK 578
>gi|429124023|ref|ZP_19184555.1| exoribonuclease R [Brachyspira hampsonii 30446]
gi|426280184|gb|EKV57202.1| exoribonuclease R [Brachyspira hampsonii 30446]
Length = 585
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 164/343 (47%), Gaps = 40/343 (11%)
Query: 175 LQKAEDNL-LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEP 233
L+ E N+ +RKD ++K ID + + +LDDA S ++ D KVYIH++D + +IE
Sbjct: 125 LENIESNIESDRKDFRNIKTVTIDSETSKDLDDAFSIEKIDDNNYKVYIHISDVSHFIEL 184
Query: 234 GSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEY 293
S D +A KRG S +L Y MFPE L+ +SL + + A+T+ ++ D +
Sbjct: 185 DSPLDLEARKRGNSTYLIDNVYNMFPEVLSNNIISLNENDNRFALTIIADINDDKGVLSS 244
Query: 294 SVDNSIIKPTYMLTYESATELLHLNLEEEAE---LKILSEAAALR--LQWRLQQG-AIDT 347
SV S+IK L+Y A +LL EEE E L++L A ++ L + ++G ++
Sbjct: 245 SVCKSVIKSDRKLSYNYAEKLLK--REEEDEKWLLELLDNALNIKNILYKKRKEGRGVEF 302
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS---------- 397
+ +I + + P I Y E++ + +M +V E+M+LC IA S
Sbjct: 303 DNQDIKIILNDEGIP---IEFYAEEKKE-SMSIVEELMLLCNSEIAKKLSNYDGVIYRYH 358
Query: 398 -------FNNLAL-------PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR 443
FNN + + P + D+ F +G + +V+++ +
Sbjct: 359 GLPDEYRFNNFKILAHTKGYELKQNPDKSYDIKGFIDNIKGKPEENLLVQVLLRSMTPSS 418
Query: 444 KPV---RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
+ H LGL Y FTSPIRRY DLL H VK + S
Sbjct: 419 YSIINKSHFGLGLDYYTYFTSPIRRYADLLVHRIVKDTILSNS 461
>gi|256422681|ref|YP_003123334.1| ribonuclease R [Chitinophaga pinensis DSM 2588]
gi|256037589|gb|ACU61133.1| ribonuclease R [Chitinophaga pinensis DSM 2588]
Length = 705
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 176/379 (46%), Gaps = 49/379 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD + ID +A + DDA+S +L+ +V +H+AD + Y++P + DK+A KR
Sbjct: 193 RKDFRKTLTFTIDPVDAKDFDDAISIRKLRGNWYEVGVHIADVSHYVQPDTALDKEADKR 252
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIKP 302
TSV+LP PM PEK++ E SLR E + +T S V ++ G I E + ++I
Sbjct: 253 ATSVYLPDRVLPMLPEKISNELCSLRPHE--DKLTFSAVFKMNDKGEIKENWIGRTVIHS 310
Query: 303 TYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+ TYE E++ + E+ +L++ + + R + GAI+ ++ E R ++ E+
Sbjct: 311 DHRFTYEQVQEVIETGEGPYKDEVLLLNKISQTLRKVRFENGAINFSSQEVRFQL--DEN 368
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYRGQPQSNID- 414
+PI V ++ A +L+ E+M+L +A Y G+ ++ PYR + +
Sbjct: 369 AKPI--GIVIKESKEAHQLIEELMLLANRTVAEYVYNIRIGTNQHVPFPYRVHDTPDEEK 426
Query: 415 ---VSAFAH---------------------------LPEGPVRSSAIVKIMRAAAIDFRK 444
SAFA PE V + ++ M AA
Sbjct: 427 LKMFSAFARKFGHKLEVDNLEKLARSFNEMLQLAHGKPEQHVLETLGIRTMAKAAYT-TD 485
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRI 504
+ H LG Y FTSPIRRY D+L H ++ CL + P Q+E + R
Sbjct: 486 DIGHYGLGFEHYCHFTSPIRRYPDVLVHRVLQQCLSHDIHP--DKQMEKKCKHSSEMERK 543
Query: 505 ARRLSNTSLRYWIIEFLRR 523
A + +Y +E++++
Sbjct: 544 AMEAERAANKYKQVEYMQQ 562
>gi|384208590|ref|YP_005594310.1| VacB, Exoribonuclease R [Brachyspira intermedia PWS/A]
gi|343386240|gb|AEM21730.1| VacB, Exoribonuclease R [Brachyspira intermedia PWS/A]
Length = 663
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 165/335 (49%), Gaps = 46/335 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL ++ ID ++ + DDA+S +L DG K+ IH+AD + ++ GS D++A
Sbjct: 152 FDRIDLRDIRTVTIDGADSKDFDDAISIEKLNDG-YKLGIHIADVSHFVVMGSALDREAR 210
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV V + + G++ E + S+IK
Sbjct: 211 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNQGNVKESTFHKSVIKS 270
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ +++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 271 SRRLTYDYAQDVLDGIEQDEDWLVELLKNADDVKKILLQKRIDNGSIEFNLNETQIILDK 330
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E+M++ +A
Sbjct: 331 GGNPKD------FFIGERKE-THKIIEELMLIANCEVAKRLKNIKGSIYRVHDSPDQEKL 383
Query: 396 GSFNNLALPYRG-----QPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPV 446
+F +A RG N+D +F P+ + + +++ M+ A D +
Sbjct: 384 DTFTRIAFN-RGYRVTRDADGNLDFHSFIESIMGKPDEKLLLTLLLRSMKQAIYDVNN-I 441
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H LG Y FTSPIRRY DLL H +K L G
Sbjct: 442 GHFGLGFEYYTHFTSPIRRYTDLLTHRLLKQALEG 476
>gi|435854762|ref|YP_007316081.1| ribonuclease R [Halobacteroides halobius DSM 5150]
gi|433671173|gb|AGB41988.1| ribonuclease R [Halobacteroides halobius DSM 5150]
Length = 707
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 165/341 (48%), Gaps = 49/341 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL +K+ ID ++A + DDA+S + L+ ++++ +H+AD T Y+ PG++ D++A KR
Sbjct: 244 RKDLRDVKMVTIDGEDAKDYDDAVSIVNLEGDKVRLGVHIADVTHYVRPGTVLDEEARKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD---GSIAEYSVDNSIIK 301
GTS++L PM PEKL+ SLR + +SV++ D G + +Y + SII+
Sbjct: 304 GTSIYLVDRVIPMLPEKLSNNLCSLRSN--VERLAMSVLMDFDLETGELLDYEMTESIIE 361
Query: 302 PTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTATLETR 353
+ LTY ++L EE +LK++++ + + R ++G++D E
Sbjct: 362 VNHRLTYNKVNKILMKEDEELISEYQDVVEKLKLMTQLSTKLKEIRSERGSVDFDFSE-- 419
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
I V ED +PI V+ + A +L+ + MI E +A + YR Q N+
Sbjct: 420 INVILDEDGKPID--IVKAERGVAEKLIEDFMIKTNEVVAEAMYDREIPFIYRVHEQPNM 477
Query: 414 ----DVSAFAH---------------------------LPEGPVRSSAIVKIMRAAAIDF 442
D++ F H PE V S+ +++ M+ A
Sbjct: 478 EKLTDLNEFLHNLGYHIKGLKEEVHPKALQTVLNKVEGEPEEKVVSTVLLRTMQQAHYHI 537
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
+ + H L Y FTSPIRRY DL+ H +K + +S
Sbjct: 538 QN-IGHFGLASDCYSHFTSPIRRYPDLMIHRIIKEVINQQS 577
>gi|300774533|ref|ZP_07084396.1| ribonuclease R [Chryseobacterium gleum ATCC 35910]
gi|300506348|gb|EFK37483.1| ribonuclease R [Chryseobacterium gleum ATCC 35910]
Length = 717
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/457 (26%), Positives = 203/457 (44%), Gaps = 64/457 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ PG++
Sbjct: 255 TDEEVAKRWDMRKICTFTIDPKDAKDFDDALSIRKLENGNWEIGVHIADVSHYVVPGTIL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM PE L+ + SLR E + L+ I +
Sbjct: 315 DDEAYQRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFELNDQAEIQKQWFGR 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE A E + + A E+ L + A + R+++GAI E R +
Sbjct: 375 TVIHSDRRFTYEEAQERIETGKGDLAEEINTLDKLAKIMRNERIRKGAITFDRSEVRFNL 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYR---- 406
E+ EP + +Y + D + L+ E M+L + ++ + G N YR
Sbjct: 435 --DENNEP-VGVYFKISKD-SNHLIEEFMLLANKKVSEFVSLTRKGEITNNTFIYRVHDD 490
Query: 407 ---GQPQSNID-VSAFA-------------------HLPEGPVRSSAIVKI-MR--AAAI 440
+ +S D V+ F H +G + I + MR + A+
Sbjct: 491 PDPAKLESLRDFVATFGYKMNLANTKKVAESLNKLLHDVKGKGEENMIETLAMRSMSKAV 550
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+P+ H LG Y FTSPIRRY DLLAH ++ L G P + G+LE A +
Sbjct: 551 YSTEPIGHYGLGFEYYSHFTSPIRRYPDLLAHRLLQHYLDGGKSP-NRGELEEKAKHCSA 609
Query: 501 QTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI-------------------LRFIKDR 541
R+A S++Y ++F+ + E ++ +I L ++D
Sbjct: 610 MERLAADAERDSIKYMQVKFMEKHLGE-TFKGVISGVAEFGFWVEIPENGAEGLIKLRDL 668
Query: 542 TAALLLVEVGLQAAAWVSVGA--QIGDEVEVKVEEAH 576
+ + A V G Q+GDEV++KV +A+
Sbjct: 669 VDDSYMFDAKTHAVYGVRHGNKYQLGDEVQIKVVKAN 705
>gi|46446682|ref|YP_008047.1| ribonuclease R [Candidatus Protochlamydia amoebophila UWE25]
gi|46400323|emb|CAF23772.1| putative ribonuclease R [Candidatus Protochlamydia amoebophila
UWE25]
Length = 775
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 186/392 (47%), Gaps = 44/392 (11%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ NR+DL L ID D A + DDALS R +G + +H+AD + Y++PG+
Sbjct: 270 SKKDIQNREDLRELISLTIDPDTAKDFDDALSLTRDAEGIYNLAVHIADVSHYVQPGTAL 329
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R S + P PM P L+ SLR AV+V + + S G++ +Y
Sbjct: 330 DEEAKARCNSTYFPGYCVPMLPGALSENLCSLRPNVNRLAVSVLMRIDSSGNLLDYRFTR 389
Query: 298 SIIKPTYMLTYESATELL--HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+IK TY+ A ++L N + L+++ E L Q R ++G+I+ + E I
Sbjct: 390 SVIKSAKRFTYKEAKKVLDGQKNSPYKPHLELMVELCRLLKQKRYERGSIEFSLPELVIL 449
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP-QSN 412
V E +P Y+ D ++V E M+ E +A S L YR +P + N
Sbjct: 450 V--DEKGKPYSTEYI--TYDITHQMVEEFMLKANEIVAWDLSQKGKNLTYRIHDEPSEEN 505
Query: 413 I-DVSAFA-----HLPEGPV-------------------RSSAIVKIMRAAAIDFRKPVR 447
+ D S A LP+ P +S+ ++ MR AA +
Sbjct: 506 LRDFSTLAAAFGFKLPDLPTPQDLQKLFEKAAETAYSNYLASSYIRRMRLAAYSAEN-IG 564
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
H L L Y FTSPIRRY+DL+ H L GES F L+ +A+ + Q RI+ +
Sbjct: 565 HYGLSLTHYCHFTSPIRRYVDLVVH----RILFGESDRFD--DLQEIANYCSEQERISAK 618
Query: 508 LSNTSL---RYWIIEFLRRQPKERQYRALILR 536
N+ + + ++E ++ E +Y+A+I R
Sbjct: 619 AENSVVILKKLRLLEERHQKAPEHEYQAIITR 650
>gi|395217105|ref|ZP_10401519.1| exoribonuclease II [Pontibacter sp. BAB1700]
gi|394455128|gb|EJF09666.1| exoribonuclease II [Pontibacter sp. BAB1700]
Length = 752
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 176/388 (45%), Gaps = 42/388 (10%)
Query: 182 LLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+ R+D+ + + ID +A + DDALS +L++G ++ +H+AD T Y+ P SL +K+A
Sbjct: 292 IAKRRDMRDVTTFTIDPADAKDFDDALSIQKLENGNWEIGVHIADVTHYVHPRSLLEKEA 351
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
R TSV+L T PM PE+L+ SLR E +V + +G + + ++
Sbjct: 352 FHRATSVYLVDRTIPMLPERLSNGLCSLRPNEEKFTFSVVFEIDDNGKLYDTWYGRTVTY 411
Query: 302 PTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
YE A E + + A E+ +L+ A R + GAI T E + K+
Sbjct: 412 SDRRFAYEEAQERIETGEGDFAEEINVLNNIAKKLQAKRFKNGAISFETTEVKFKLDENG 471
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------------------TYGS----- 397
P +++YV+++ D A +L+ E M+L + +A T+GS
Sbjct: 472 KP---LSIYVKERKD-AHKLIEEFMLLANKKVAEFVYNKGKGKKRPTMVYRTHGSPDPDK 527
Query: 398 ---FNNLA--LPYRGQPQSNI--DVSAFAHLPEGPVRSSAI----VKIMRAAAIDFRKPV 446
F+ A Y+ P +I +++ H EG S + ++ M A A +P
Sbjct: 528 LNTFSVFARKFGYKVDPDGDISEELNNLTHEIEGKPEQSVLQNLAIRTM-AKAKYSTEPE 586
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
H L Y FTSPIRRY D++AH ++ L G E M+ R A
Sbjct: 587 GHFGLAFDHYSHFTSPIRRYPDMMAHRLLQHYLDGGQSEDKEAYEERCRHSSEMEKRAA- 645
Query: 507 RLSNTSLRYWIIEFLRRQPKERQYRALI 534
S++Y +EF+ + QY+ ++
Sbjct: 646 DAERASIKYKQVEFM-KDTIGNQYKGIV 672
>gi|254876038|ref|ZP_05248748.1| ribonuclease II [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254842059|gb|EET20473.1| ribonuclease II [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 624
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 180/361 (49%), Gaps = 26/361 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL YAID + +++ DDA+S Q+ K+++H+ADP+ I G D +A R
Sbjct: 238 RVDLTHLTAYAIDDEGSNDPDDAISWDAQQN---KMWVHIADPSSSISFGDEVDLEARAR 294
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+++++P M P + A + + L EV A++V L G I + + S IK T
Sbjct: 295 GSNLYVPEHIITMLPPQ-ATQKLGLGLQEVSPALSVGFRLDESGDIHDIEICFSNIKVT- 352
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE- 363
+YE E +++ E ++++ ++ + RL +GA++ E +I + N ++ +
Sbjct: 353 RYSYEFVEE--NISALELGDIEVYTKYFTDK---RLAKGAVELDFPEIKISLDNDKNVKL 407
Query: 364 ---PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
P +N + LV + M++ G AI + NN+ +P+ QP+ +++ +
Sbjct: 408 TDLPRLN---------SRTLVRDTMLMAGVAIGQFCKENNICVPFSTQPEHDLEQDDLEN 458
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ + K+ R +P H +GL YVQ TSP+RRY+DLL HYQ++ L
Sbjct: 459 IDSIADMFATRKKLQRGKYS--TEPDVHAGMGLDSYVQVTSPLRRYLDLLVHYQLRNFLE 516
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKD 540
+ S ++ + + V++ + R+ S +W + +L + P A+I + K
Sbjct: 517 NKQ-MISVDDVDNIIAQVDIPIKSNRQTERFSNSHWKLVYLMQNPNLEFQAAVIEKLDKG 575
Query: 541 R 541
R
Sbjct: 576 R 576
>gi|302342867|ref|YP_003807396.1| exoribonuclease II [Desulfarculus baarsii DSM 2075]
gi|301639480|gb|ADK84802.1| Exoribonuclease II [Desulfarculus baarsii DSM 2075]
Length = 662
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 168/365 (46%), Gaps = 38/365 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DLT + V+ ID + DDALS G + +H+ D + P S D +A
Sbjct: 269 TRRDLTDMHVFTIDGAFTTDFDDALSFEPEPGGGGVLGVHITDAGAVLAPDSPLDLEARG 328
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTS+++P PM P L+ + +SLRQ ++ A++ L +DG + +Y + S+I+
Sbjct: 329 RGTSIYMPDDRIPMLPPSLSEDALSLRQDQLRPAISTLARLDADGQVLDYEIVRSVIRVA 388
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
+TY+ A L L+ + LK + R + GA E + V +
Sbjct: 389 RRITYDEADYL----LDSDPRLKGMHAICQALKAARGRAGAYFLPLPEVIVGV------D 438
Query: 364 PIINLYVE--DQADPAMRLVSEMMILCG----------EAIATYGSFNNLALPYR-GQPQ 410
+ +YV D+ + +V+E IL EA Y + A P+R GQP+
Sbjct: 439 ELGQVYVRRIDREGASREMVAETAILANWLAARHLRDHEAPCLYRRQSPPAEPFREGQPE 498
Query: 411 SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLL 470
+ H + + + A + KP H LG+ Y Q TSPIRRY DL+
Sbjct: 499 -----DIYLHFSQRRLLNPADLTT---------KPGLHSSLGVDPYTQVTSPIRRYFDLI 544
Query: 471 AHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQY 530
Q+ A L G P ++ +L+ +A V+ R A R N RYW++ +L + K ++
Sbjct: 545 VQRQLGAVLAGRGPVYAKSRLKELAQEVDATVRRAGRARNMRQRYWLLRWLEAR-KGQEL 603
Query: 531 RALIL 535
AL++
Sbjct: 604 DALVM 608
>gi|219112029|ref|XP_002177766.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410651|gb|EEC50580.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 813
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 141/517 (27%), Positives = 227/517 (43%), Gaps = 120/517 (23%)
Query: 175 LQKAEDNLLN-RKDLTHLKVYAIDVDEADELDDALSA--MRLQDG--RIKVYIHVADPTK 229
+Q+ D+LL R+DL LKVY ID + E+DD LS +R DG R ++IH+AD +
Sbjct: 294 VQRDPDSLLGIRRDLRDLKVYTIDGESTTEIDDGLSIEIIRQPDGTERQAIWIHIADADR 353
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
+ S A R TS++LP + PMFP +++ MSL G+ A+++ V+L+ DGS
Sbjct: 354 WAPRNSTLFHAARTRYTSLYLPRGSCPMFPPQVSDNVMSLIAGQDACALSLRVMLNEDGS 413
Query: 290 IAEYS--VDNSIIKPTYMLTYESATELL--HLNLEEEAELKILSEAAALRLQWRLQQ--- 342
I + V S+I Y LTY E+L + EE EL L A R R++
Sbjct: 414 IDASTLIVTPSLIHVDYRLTYNDVDEMLAEGIGYREEWELGALLGIANARRDCRIRNGSS 473
Query: 343 -------------------GAIDTATLETRIKVANPEDPEPIINLYVEDQAD-------- 375
GA D +E I+V++ N ED D
Sbjct: 474 EGWIPNPIPYATISTKNDVGATDGVAIELEIQVSHNAGK----NYSAEDALDESKSPINV 529
Query: 376 ----PAMRLVSEMMILCGEAI---------------ATYGSFNN-LALPYRGQPQSN--- 412
A +V+E MIL GE++ ++G+F N L LP+R QP+ +
Sbjct: 530 LPVSAAYLMVTEAMILAGESLGRWQSRLEEEEKSINGSHGAFQNYLRLPFRTQPKPDWAS 589
Query: 413 --------IDVSAFAHLPEGPVRSSAIVKIMRAAAI-DFRKPVRHGVLGLPGYVQFTSPI 463
+D+ + ++ G + + +++ + + R P H LGL Y+Q+TSPI
Sbjct: 590 RAREKKIMMDLLEY-NIGNGLCHAWYARRFLQSVRVTETRLP--HFGLGLDSYIQWTSPI 646
Query: 464 RRYMDLLAHYQVKACLR--------GESPPFSAG-----------QLEGMASIVNMQ--- 501
RR+ DL AH VK LR + P G LE +++N+
Sbjct: 647 RRFSDLQAHSAVKRFLRRKRVHQLLHQGSPIPEGIQSSDLGWPGDALEDKENLINLSRDD 706
Query: 502 -------------TRIARRLSNTSLRYWIIEFLRRQPK---ERQYRALILRFI--KDRTA 543
A+ + S ++W+ E +RR + + ++ A++L I + R
Sbjct: 707 VDQDINFLESVGLMGAAKVVQRQSQQFWLFEHIRRLHEVDPDIKFNAVVLGCIDPEKRQF 766
Query: 544 ALLLVEVGLQAAAWVSVGAQI--GDEVEVKVEEAHPR 578
A+ + E+GL+ ++ G E+ +KV+ PR
Sbjct: 767 AIYVHELGLEHRYTAPGQGRLNQGTEMILKVDSVSPR 803
>gi|431796052|ref|YP_007222956.1| ribonuclease R [Echinicola vietnamensis DSM 17526]
gi|430786817|gb|AGA76946.1| ribonuclease R [Echinicola vietnamensis DSM 17526]
Length = 724
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 171/352 (48%), Gaps = 54/352 (15%)
Query: 171 ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
IS+ + K+ ++ +RKD + + ID +A + DDA+S RL +G I++ +H+AD T Y
Sbjct: 257 ISDKISKS--DIKSRKDFRGVTTFTIDPADAKDFDDAISYQRLPNGNIEMGVHIADVTHY 314
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDG 288
++P + +K+A R TSV+L T PM PE+L+ SLR E + +T S V L DG
Sbjct: 315 VKPNTPLEKEAYDRATSVYLVDRTIPMLPERLSNGLCSLRPHE--DKLTFSCVFELDEDG 372
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEE-----AELKILSEAAALRLQWRLQQG 343
+ ++ + +II YE A E N++++ +EL +L+ A + R QQG
Sbjct: 373 QVLKHWIGRTIIHSDRRFAYEEAQE----NIDQQEGDFYSELTLLNNLAKKIRKRRFQQG 428
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN---- 399
AI+ T+E + K+ + P + L V+++ D +++ E M+L +A+A + FN
Sbjct: 429 AINFETVEVKFKLDDKGTP---LGLMVKERKD-IHKMIEEFMLLANKAVAEF-VFNKNKG 483
Query: 400 NLALPYRGQPQSNID--------VSAFAH---LPEGPVRSSAIVKIM------------- 435
+ YR +++ F H + E S+ + K+M
Sbjct: 484 DDTFVYRIHDHPDLERLETFANFAKKFGHEVSITEATRVSATLNKLMGEIEGKPEQNLLE 543
Query: 436 ------RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
A A +P H L Y FTSPIRRY D++ H ++ L G
Sbjct: 544 QLAIRSMAKARYTTEPKGHFGLAFKHYTHFTSPIRRYPDMMVHRLLQHYLDG 595
>gi|269468385|gb|EEZ80050.1| exoribonuclease R [uncultured SUP05 cluster bacterium]
Length = 601
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 190/374 (50%), Gaps = 29/374 (7%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
++R DLTHL YAID + + DDA+S DG K+++H+AD + + PGS D A
Sbjct: 218 VDRTDLTHLHSYAIDNVGSTDADDAISI----DGD-KIWVHIADVSAIVVPGSDLDAYAQ 272
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+R ++++LP M P + E +L E NA++V VL +G I V S+IK
Sbjct: 273 ERASNLYLPEQILHMLPISIT-ELCALGISETSNALSVGFVLE-EGEINNIEVIRSLIKV 330
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAI--DTATLETRIKVANPE 360
T ++Y+ A + L N + ++LK + EA Q+R AI D ++ R +
Sbjct: 331 T-NISYDEADDFLDKN-KHLSKLKAVVEAHK---QYRDAHNAISLDLPNVDVRFR----- 380
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
+ ++ + + ++ + L++EMMI+ G AIA + N++ +PY Q + + +
Sbjct: 381 --DDLVTITAQ-KSSQSRELIAEMMIMAGRAIAKFSVENDIVMPYAIQDEGDFPKETLDN 437
Query: 421 LPEGPVRSSAIVKIMRA--AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
+G + SA K + + KP++H LGL Y++ TSP+RRY+DLL H Q+ +
Sbjct: 438 --KGSLTLSASFKATKCFKRSATSTKPLQHYGLGLEAYLRVTSPLRRYLDLLVHQQLSSF 495
Query: 479 LRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFI 538
+ GE +++ + I N + + S ++ +L + PK Q +++
Sbjct: 496 ISGEK-TLEKDKVKEIIGITNATMPDIGKTTRASNDHYKCLYLMQNPK-WQSEGVVVDTR 553
Query: 539 KDRTAALLLVEVGL 552
D+ A ++ E+G+
Sbjct: 554 GDK-ALFMIPEIGM 566
>gi|398308309|ref|ZP_10511783.1| ribonuclease R [Bacillus mojavensis RO-H-1]
Length = 778
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 160/342 (46%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+AM+RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEAMERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGEVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQILVDDDEELKQKYEPLVPMFKDMERLAEILREKRMNRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|167626915|ref|YP_001677415.1| ribonuclease II family protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596916|gb|ABZ86914.1| ribonuclease II family protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 624
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 180/361 (49%), Gaps = 26/361 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL YAID + +++ DDA+S Q+ K+++H+ADP+ I G D +A R
Sbjct: 238 RVDLTHLTAYAIDDEGSNDPDDAISWDAQQN---KMWVHIADPSSSISFGDEVDLEARAR 294
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+++++P M P + A + + L EV A++V L G I + + S IK T
Sbjct: 295 GSNLYVPEHIITMLPPQ-ATQKLGLGLQEVSPALSVGFRLDESGDIHDIEICFSNIKVT- 352
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE- 363
+YE E +++ E ++++ ++ + RL +GA++ E +I + N ++ +
Sbjct: 353 RYSYEFVEE--NISALELGDIEVYTKYFTDK---RLAKGAVELDFPEIKISLDNDKNVKL 407
Query: 364 ---PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
P +N + LV + M++ G AI + NN+ +P+ QP+ +++ +
Sbjct: 408 TDLPRLN---------SRTLVRDTMLMAGVAIGQFCKENNICVPFSTQPEHDLEQDDLEN 458
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ + K+ R +P H +GL YVQ TSP+RRY+DLL HYQ++ L
Sbjct: 459 IDSIADMFATRKKLQRGKYS--TEPDVHAGMGLDSYVQVTSPLRRYLDLLVHYQLRNFLE 516
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKD 540
+ S ++ + + V++ + R+ S +W + +L + P A+I + K
Sbjct: 517 NKQ-MISIDDVDNIIAQVDIPIKSNRQTERFSNSHWKLVYLMQNPNLEFQAAVIEKLDKG 575
Query: 541 R 541
R
Sbjct: 576 R 576
>gi|429219271|ref|YP_007180915.1| exoribonuclease R [Deinococcus peraridilitoris DSM 19664]
gi|429130134|gb|AFZ67149.1| exoribonuclease R [Deinococcus peraridilitoris DSM 19664]
Length = 618
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 170/351 (48%), Gaps = 31/351 (8%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRL--QDGRI--KVYIHVADPTKYIEPGSLSDK 239
R DL+HL AID + + + DDALS RL ++G ++++HVAD + P D+
Sbjct: 229 ERLDLSHLSALAIDDEGSSDPDDALSLERLVLENGEAGWRLWVHVADAAALVAPDGEIDR 288
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KRG +++LP T PM PE + + + L + A++++V L + V +
Sbjct: 289 EARKRGATLYLPETTVPMLPEPITGQ-LGLGLADTSPALSIAVQLSAAFEPQGAEVHLTR 347
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQ---GAIDTATLETRIKV 356
I+ T LTY A L + + L E AAL + R ++ GA+ E R++V
Sbjct: 348 IRVTR-LTYAEAQRAL-----DAGQPGPLQELAALAVTARTRREAAGAVMLELPEVRVRV 401
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNID 414
D E II Q+ +V E M+L GE++AT+ +L LP+ Q P + ++
Sbjct: 402 ---RDGEVIITPLPPLQS---RAVVQEAMMLAGESVATWAQQRDLPLPFAAQDPPLARVE 455
Query: 415 VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ 474
A A K + R RH LGL Y Q TSP+RRY+DL+ H Q
Sbjct: 456 GEQLAQ-------QWARRKSLSRTRFSPRA-GRHAGLGLQAYAQATSPLRRYLDLVVHQQ 507
Query: 475 VKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQP 525
++A LRGE P + ++ + ++ R + R+W + +L R+P
Sbjct: 508 LRAALRGER-PLTGAEIAARIAEADLAAGAVRAAERAANRHWTLVYLSRRP 557
>gi|229495883|ref|ZP_04389609.1| ribonuclease R [Porphyromonas endodontalis ATCC 35406]
gi|229317196|gb|EEN83103.1| ribonuclease R [Porphyromonas endodontalis ATCC 35406]
Length = 736
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 174/395 (44%), Gaps = 72/395 (18%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + ID +A + DDALS +L+ G ++V +H+AD + Y+ PGS+ DK
Sbjct: 274 EEMAKREDFREVFTLTIDPADAKDFDDALSWRKLEGGLVEVGVHIADVSYYVTPGSVIDK 333
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A R TS++L T PM PE+L + SLR E A + VL+ + Y + +I
Sbjct: 334 EAYDRATSIYLVDRTIPMLPERLCNDLCSLRPNEARLAFSCVFVLNEAAEVQSYRIGRTI 393
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKI-LSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
I+ YE A +++ ++AE+ + L A L + R QGAI+ ++ E + +
Sbjct: 394 IESNRRYAYEEAQQVIDTKEGDDAEVILSLHSLAQLLRKRRFAQGAINFSSQEVQFVLDA 453
Query: 359 PEDPEPIINLYVEDQADP---AMRLVSEMMILCGEAIAT-YGSFNNLALPYRGQPQSNID 414
P V+ A P A L+ E M+L +AT +G + Q SN D
Sbjct: 454 EGRP-------VDVMARPHGTANELIEEFMLLANRTVATEFG---------KKQRNSNGD 497
Query: 415 VSAFAH----LPEG-------------------PVRSSAIVKIMRA---AAIDFRKP--- 445
F + LP+G +SAI K + A A+ D KP
Sbjct: 498 AKTFIYRIHDLPDGDKLNQMGAFIRRFGYQFKNATEASAISKNLNAVIEASQD--KPEAT 555
Query: 446 -------------------VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPF 486
+ H L Y FTSPIRRY DLL H V + GE
Sbjct: 556 LIQTMAVRTMARAEYSTENIGHYGLAFEYYTHFTSPIRRYPDLLVHRLVARYMAGEGSVP 615
Query: 487 SAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFL 521
A + E A + Q ++A + S+RY +E++
Sbjct: 616 QA-EYEAYAQHCSDQEQVAAKAERDSVRYKQVEYM 649
>gi|208779981|ref|ZP_03247324.1| ribonuclease II family protein [Francisella novicida FTG]
gi|208743985|gb|EDZ90286.1| ribonuclease II family protein [Francisella novicida FTG]
Length = 618
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 193/390 (49%), Gaps = 25/390 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEIDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDKQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++P+ QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVPFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ++ L+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSIHAGMGLEAYVQVTSPLRRYLDLIVHYQLRNFLQH 511
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
+ SA +++ + + V++ + R+ S +W + +L + P + +++A ++ ++
Sbjct: 512 KE-MISAQEIDNIIAQVDIPIKSNRQTERFSNSHWKLVYLIQNP-DLEFQATVIEKLEKG 569
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + + + VS + D+++++
Sbjct: 570 RLMVSIAALAMTKKLSVSGKYDLNDQIKLQ 599
>gi|118496748|ref|YP_897798.1| ribonuclease II family protein [Francisella novicida U112]
gi|194324055|ref|ZP_03057830.1| ribonuclease II family protein [Francisella novicida FTE]
gi|118422654|gb|ABK89044.1| ribonuclease II family protein [Francisella novicida U112]
gi|194321952|gb|EDX19435.1| ribonuclease II family protein [Francisella tularensis subsp.
novicida FTE]
Length = 618
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 193/390 (49%), Gaps = 25/390 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEIDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++P+ QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVPFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ++ L+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSIHAGMGLEAYVQVTSPLRRYLDLIVHYQLRNFLQH 511
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
+ SA +++ + + V++ + R+ S +W + +L + P + +++A ++ ++
Sbjct: 512 KE-MISAQEIDNIIAQVDIPIKSNRQTERFSNSHWKLVYLIQNP-DLEFQATVIEKLEKG 569
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + + + VS + D+++++
Sbjct: 570 RLMVSIAALAMTKKLSVSGKYDLNDQIKLQ 599
>gi|414879756|tpg|DAA56887.1| TPA: hypothetical protein ZEAMMB73_060871 [Zea mays]
Length = 363
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 98/144 (68%), Gaps = 6/144 (4%)
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLENQVLQKGLLLEFK 119
R G +S HS+VD VM+EL + R+ AK+ + + EL ++K+ + LQKGLLLEF+
Sbjct: 47 RGGCRSRLAHSIVDLVMEELRSRRRVRVS-AKIGLQGTKELPDNKIVKRTLQKGLLLEFQ 105
Query: 120 KDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAE 179
KD +R LLAV +RPDGKKNWMV DQNG SIKPQQVT+VVPG+ FD+ I FL+K +
Sbjct: 106 KDPERSLLAVVERPDGKKNWMVTDQNGVMSSIKPQQVTYVVPGIMNFDYSKIDEFLEKTQ 165
Query: 180 DNLLNRKDLTHLKVYAIDVDEADE 203
NLL D T L+ +++ E D+
Sbjct: 166 -NLL---DPTILECAWMELSEKDK 185
>gi|55980879|ref|YP_144176.1| exoribonuclease [Thermus thermophilus HB8]
gi|55772292|dbj|BAD70733.1| exoribonuclease [Thermus thermophilus HB8]
Length = 744
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 163/342 (47%), Gaps = 45/342 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E L R+D L+V+ ID +A + DDA+ RL G ++ +H+AD + Y++ G
Sbjct: 216 LEIPEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPGG-YRIGVHIADVSHYVKEG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
SL D++A RGTSV+LP PM PE+L+ SLR GE ++V V L D +
Sbjct: 275 SLLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELLHLNLEEEA----ELKILSEAAALRLQWRLQQGAIDT 347
+I+ LTY E+ E L EE A +L++L + + RL++GA+D
Sbjct: 335 FREGVIRSVARLTYTEVEAFAEGFGLP-EEHAFLAEDLRLLLDLTQRMREKRLKEGALDF 393
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYR 406
A E +++V + L++ QA+P R L+ E+M+L +A Y L +R
Sbjct: 394 AFPEVKVEVGEEGE------LHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLFR 447
Query: 407 GQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ D A A L PE PV + +++ +R A
Sbjct: 448 VHEEPVQDAYEKLRQALARLGYTLPPKLSGHALQKALLASRGRPEEPVVAYLVLRSLRLA 507
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ H L + Y+ FTSPIRRY DL+ H +KA LR
Sbjct: 508 RYAPEN-LGHFGLAMEHYLHFTSPIRRYPDLVVHRVLKAALR 548
>gi|385792058|ref|YP_005825034.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676204|gb|AEB27074.1| ribonuclease II family protein [Francisella cf. novicida Fx1]
Length = 618
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 191/390 (48%), Gaps = 25/390 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFTIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++P+ QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVPFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ++ +
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSIHAGMGLEAYVQVTSPLRRYLDLIVHYQLRNFFQH 511
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
+ SA +++ + + V++ + R+ S +W + +L + P + +++A ++ ++
Sbjct: 512 KE-MISAQEIDNIIAQVDIPIKSNRQTERFSNSHWKLVYLIQNP-DLEFQATVIEKLEKG 569
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + + + VS + D++ ++
Sbjct: 570 RLMVSIAALAMTKKLSVSGKYDLNDQINLQ 599
>gi|299143290|ref|ZP_07036370.1| ribonuclease R [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298517775|gb|EFI41514.1| ribonuclease R [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 699
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 177/375 (47%), Gaps = 46/375 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
AE +L +R DL + + ID ++ + DDA+S +L++G ++ +H+AD + Y++
Sbjct: 230 AEKDLKDRLDLRDITTFTIDGADSKDFDDAVSIEKLENGGYRLGVHIADVSHYVKESDEI 289
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS--IAEYSV 295
DK+A +RG SV+L PM PE+L+ SL +G + +T+SV+++ D + + E+ +
Sbjct: 290 DKNAYERGNSVYLIDKVIPMLPEELSNGICSLNEG--VDRLTLSVMINLDNNAKVIEHQI 347
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKI-----LSEAAALRL-QWRLQQGAIDTAT 349
++I+ + L Y++ ++L+ N+ +E+ L I L AL+L + R+ +G+ID
Sbjct: 348 VPAVIRSSKRLIYDNVSDLIEKNIVDESVLNIKDDLLLMNELALKLRKRRMDRGSIDFDF 407
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E +I V N P II ++ A +L+ E M+LC E +A + L YR
Sbjct: 408 PEAKITVDNNGRPTDII----REERRSANKLIEEFMLLCNETVAEQYFWMELPFIYRIHE 463
Query: 410 Q----------------------SNIDVSAFAHLPEGPVR--------SSAIVKIMRAAA 439
+ N+D L E V+ S+ I++ M+ A
Sbjct: 464 EPDEEKIESLNKILRHLGLKLNTQNLDSKEVQSLIE-KVKGKEFELFVSTLILRSMKKAR 522
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ + G L Y FTSPIRRY DL H +K ++ + E + S
Sbjct: 523 YSEQNDIHFG-LAAKYYSHFTSPIRRYADLTIHRIIKDSIKNKLTTGRINYFENVLSDFA 581
Query: 500 MQTRIARRLSNTSLR 514
RL+ + R
Sbjct: 582 KHISATERLAQDAER 596
>gi|337754143|ref|YP_004646654.1| RNase R-like protein [Francisella sp. TX077308]
gi|336445748|gb|AEI35054.1| RNase R-related protein [Francisella sp. TX077308]
Length = 624
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 179/361 (49%), Gaps = 26/361 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL YAID + +++ DDA+S Q+ K+++H+ADP+ I G D +A R
Sbjct: 238 RADLTHLTAYAIDDEGSNDPDDAISWDAQQN---KMWVHIADPSSSISFGDEVDLEARAR 294
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+++++P M P + A + + L EV A++V + G I + + S IK T
Sbjct: 295 GSNLYVPEHIITMLPPQ-ATQKLGLGLQEVSPALSVGFRIDESGDIHDIEICFSNIKVT- 352
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE- 363
+YE E + NLE E++I ++ + RL +GA++ E +I + N ++ +
Sbjct: 353 RYSYEFVEENIS-NLEL-GEIEIYAKYFTDK---RLAKGAVELDFPEIKILLDNDKNVKL 407
Query: 364 ---PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
P +N + LV + M++ G AI + NN+ +P+ QP+ ++ +
Sbjct: 408 TDLPRLN---------SRTLVRDTMLMAGVAIGQFCKENNICVPFSTQPEHDLKQDDLEN 458
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ + K+ R +P H +GL YVQ TSP+RRY+DLL HYQ++ L
Sbjct: 459 IDSIADMFATRKKLQRGKYS--TEPDVHAGMGLDSYVQVTSPLRRYLDLLVHYQLRNFLE 516
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKD 540
+ S ++ + + V++ + R+ S +W + +L + P A+I + K
Sbjct: 517 NKQ-MISVDDVDNIIAQVDIPIKSNRQTERFSNSHWKLVYLMQNPNLEFQAAVIEKLDKG 575
Query: 541 R 541
R
Sbjct: 576 R 576
>gi|328950676|ref|YP_004368011.1| ribonuclease R [Marinithermus hydrothermalis DSM 14884]
gi|328451000|gb|AEB11901.1| ribonuclease R [Marinithermus hydrothermalis DSM 14884]
Length = 780
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 153/336 (45%), Gaps = 39/336 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E L R D HL V+ ID +A + DDA+ R ++G +V IH+AD + Y+ GS D
Sbjct: 234 EAELHRRADFRHLNVFTIDGADAKDFDDAIHIERYKNGNYRVGIHIADVSHYVPEGSALD 293
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+LP PM PEKL+ SL GE ++V V L G + YS
Sbjct: 294 QEAFERGTSVYLPGRVLPMLPEKLSNGVCSLVPGEDRLVLSVLVDLTPSGEVKRYSFKEG 353
Query: 299 IIKPTYMLTYESATELLHLN-LEE-----EAELKILSEAAALRLQWRLQQGAIDTATLET 352
+I+ LTY+ + L E EA+L+ L RL+QGA+D + E
Sbjct: 354 VIRSKARLTYDQVQAFFEGDPLPEAARFLEADLRDLFALTQTLKARRLEQGALDFSFTEV 413
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ V DP+ ++L + + A L+ E+M+L +A + + + YR
Sbjct: 414 KVDV----DPDGTLHLIPIAERE-ARSLIEELMLLANRIVAKHLADKGIPALYRVHEDPA 468
Query: 413 ID-----VSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKP------------------ 445
D V A A LP A+ +++ AA P
Sbjct: 469 EDRYRALVEALARMGYKLPGKEPDPKALQQVLHQAAGRPEAPAVSMLLLRSLSLARYAPE 528
Query: 446 -VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ H L Y+ FTSPIRRY DL+ H ++ +R
Sbjct: 529 NLGHFGLAFEDYLHFTSPIRRYPDLVVHRVLRHVMR 564
>gi|449120224|ref|ZP_21756610.1| hypothetical protein HMPREF9725_02075 [Treponema denticola H1-T]
gi|449122629|ref|ZP_21758962.1| hypothetical protein HMPREF9727_01722 [Treponema denticola MYR-T]
gi|448947619|gb|EMB28463.1| hypothetical protein HMPREF9727_01722 [Treponema denticola MYR-T]
gi|448948368|gb|EMB29205.1| hypothetical protein HMPREF9725_02075 [Treponema denticola H1-T]
Length = 623
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 186/392 (47%), Gaps = 28/392 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG+ ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGK-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV +D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETEDDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+ + G+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQLLKFIDGKEV 523
Query: 485 PFSAGQLEGMAS--IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+ L +A+ I A R S ++W + +L + P + Q A+IL IK+ T
Sbjct: 524 MKTDDLLMRIAAGDIAGKNCSYAER---ASRQHWTLIYLLQNP-DWQGEAVILETIKN-T 578
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
A + + +G + + I + + VK E+
Sbjct: 579 ARISIPSIGYETEMRLKKELSINERINVKAED 610
>gi|449115717|ref|ZP_21752177.1| hypothetical protein HMPREF9726_00162 [Treponema denticola H-22]
gi|448955203|gb|EMB35970.1| hypothetical protein HMPREF9726_00162 [Treponema denticola H-22]
Length = 623
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 185/392 (47%), Gaps = 28/392 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GAI E +IKV +D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAEKNRKKREAAGAISIDMPEVQIKVETEDDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+ + G+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQLLKFIDGKEV 523
Query: 485 PFSAGQLEGMAS--IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+ L +A+ I A R S ++W + +L + P + Q A+IL IK+ T
Sbjct: 524 MKTDDLLMRIAAGDIAGKNCSYAERASR---QHWTLIYLLQNP-DWQGEAVILETIKN-T 578
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
A + + +G + + I + + VK E+
Sbjct: 579 ARISIPSIGYETEMRLKKELSINERINVKAED 610
>gi|423315862|ref|ZP_17293767.1| ribonuclease R [Bergeyella zoohelcum ATCC 43767]
gi|405585578|gb|EKB59402.1| ribonuclease R [Bergeyella zoohelcum ATCC 43767]
Length = 719
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 171/385 (44%), Gaps = 46/385 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + R+D+ + + ID +A + DDALS +L++G +V +H+AD + Y+ PG+L D
Sbjct: 256 EEEVKKRRDMRDVLTFTIDPKDAKDFDDALSIRQLKNGNWEVGVHIADVSHYVTPGTLLD 315
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A R TS++L PM PE L+ + SLR E + L+ I + +
Sbjct: 316 EEAYSRATSIYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFELNDKAEIIKQWFGRT 375
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+I TYE A E + + A E+ +L + A + + R+++GAI E R +
Sbjct: 376 VIHSDRRFTYEEAQERIETGKGDLAEEILVLDKLAKILREDRVKKGAITFDRSEVRFHL- 434
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN------NLALPYR----- 406
E+ EP + +Y + D A L+ E M+L ++ Y S N L YR
Sbjct: 435 -DENNEP-VGVYFKTSKD-ANHLIEEFMLLANRKVSEYISINAKNEVTGLTFIYRVHDDP 491
Query: 407 ---------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAA 439
+ +N+ S E + + A+ + + A
Sbjct: 492 DPTKLEALRDFVATFGYKMNLSNSKKVAESMNNLLKSVKGKGEENMIETLAMRSM--SKA 549
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ P+ H LG Y FTSPIRRY DL+AH ++ L P A E N
Sbjct: 550 VYSTDPIGHYGLGFAYYTHFTSPIRRYPDLIAHRLLQHYLDKGKSPNKAEYEEKCKHCSN 609
Query: 500 MQTRIARRLSNTSLRYWIIEFLRRQ 524
M+ R+A S++Y ++F+ +
Sbjct: 610 ME-RLASDAERDSIKYMQVKFMEQH 633
>gi|374295591|ref|YP_005045782.1| RNAse R [Clostridium clariflavum DSM 19732]
gi|359825085|gb|AEV67858.1| RNAse R [Clostridium clariflavum DSM 19732]
Length = 786
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 170/346 (49%), Gaps = 49/346 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R+DL L++ ID ++A +LDDA+S RL +G K+ +H+AD + Y+ GS
Sbjct: 243 TEEMIKGRRDLRDLRMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVSYYVTEGSPL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A+KRGTSV+L PM P++L+ SL + TV + + S+G + ++ +
Sbjct: 303 DKEALKRGTSVYLVDRVIPMLPKELSNGICSLNPQVDRLSFTVMMEIDSNGKVVDHEIFE 362
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+I+ +TY T++ + +E++ EL K + E A + R+Q+G+ID
Sbjct: 363 SVIRTNERMTY---TDVYKILVEKDKELSKRYDYLVEDFKTMEELALILRNKRMQRGSID 419
Query: 347 TATLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
E +I + E+ +PI I Y + A +++ E M++C E +A + + N+ Y
Sbjct: 420 FDFDEAKILL--DENGKPIDIKRY---EITIANKIIEEFMLVCNETVAEHFFWANVPFVY 474
Query: 406 RGQPQSNID----VSAFAH------------LPEG------PVRSSAIVKIMRAAAIDFR 443
R + D S F H P ++ + +I+ +
Sbjct: 475 RVHEDPDTDKIESFSEFVHNLGYTLKGINKIHPRALQDLLEKIKGTKEERIISTVMLRSL 534
Query: 444 KPVRH-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ R+ G GL Y FTSPIRRY DL+ H +K L+G+
Sbjct: 535 QKARYSHLSVGHFGLAARYYCHFTSPIRRYPDLIIHRIMKEYLKGQ 580
>gi|187934548|ref|YP_001887237.1| ribonuclease R [Clostridium botulinum B str. Eklund 17B]
gi|187722701|gb|ACD23922.1| ribonuclease R [Clostridium botulinum B str. Eklund 17B]
Length = 746
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 175/370 (47%), Gaps = 47/370 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL L++ ID ++A +LDDA+S +L+DG K+ +H+AD T Y+ ++ DK+A+KR
Sbjct: 252 RVDLRDLRMVTIDGEDAKDLDDAVSIEKLEDGNFKLGVHIADVTHYVRENNILDKEALKR 311
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P++L+ SL A++ +V+++ G++ ++ + S+IK +
Sbjct: 312 ATSVYLIDRVIPMLPKQLSNGICSLNPKVDRLALSCFMVINNKGTVVDHEIMESVIKTSE 371
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
+TY T++L N EE + K++ E + R+++GAID E++I
Sbjct: 372 RMTYTDVTKILRDNDEELIKKYDYLCDDFKLMEELCLILRSKRMKRGAIDFDFEESKIIL 431
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP---- 409
++ P D +P + + A +++ E M++C E +A + ++ L YR
Sbjct: 432 DEMGKPIDIKPY-------EREIANKIIEEFMLICNETVAEHMFWSKLPFVYRVHETPDE 484
Query: 410 -------------------QSNIDVSAFAHLPE---GPVRSSAIVKIMRAAAIDFR---K 444
+++ + E G + + ++ + + R +
Sbjct: 485 EKLVKFKEFIYNLGYKINWSEDVNPKTLQSILEQVKGKKEETIVSTLLLRSMMQARYAPE 544
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRI 504
V H L Y FTSPIRRY DL H +K L GE +L + + + Q+
Sbjct: 545 CVGHFGLAAQYYCHFTSPIRRYPDLQIHRIIKEHLNGEIDDARFKKLVPIVDVASKQSSE 604
Query: 505 ARRLSNTSLR 514
R++ + R
Sbjct: 605 KERVAQEAER 614
>gi|166154608|ref|YP_001654726.1| exoribonuclease II [Chlamydia trachomatis 434/Bu]
gi|166155483|ref|YP_001653738.1| exoribonuclease II [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|301335875|ref|ZP_07224119.1| exoribonuclease II [Chlamydia trachomatis L2tet1]
gi|339626071|ref|YP_004717550.1| ribonuclease R [Chlamydia trachomatis L2c]
gi|165930596|emb|CAP04093.1| exoribonuclease II [Chlamydia trachomatis 434/Bu]
gi|165931471|emb|CAP07047.1| exoribonuclease II [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|339461079|gb|AEJ77582.1| ribonuclease R [Chlamydia trachomatis L2c]
gi|440526203|emb|CCP51687.1| exoribonuclease R [Chlamydia trachomatis L2b/8200/07]
gi|440536028|emb|CCP61541.1| exoribonuclease R [Chlamydia trachomatis L2b/795]
gi|440536920|emb|CCP62434.1| exoribonuclease R [Chlamydia trachomatis L1/440/LN]
gi|440537810|emb|CCP63324.1| exoribonuclease R [Chlamydia trachomatis L1/1322/p2]
gi|440538700|emb|CCP64214.1| exoribonuclease R [Chlamydia trachomatis L1/115]
gi|440539589|emb|CCP65103.1| exoribonuclease R [Chlamydia trachomatis L1/224]
gi|440540480|emb|CCP65994.1| exoribonuclease R [Chlamydia trachomatis L2/25667R]
gi|440541369|emb|CCP66883.1| exoribonuclease R [Chlamydia trachomatis L3/404/LN]
gi|440542256|emb|CCP67770.1| exoribonuclease R [Chlamydia trachomatis L2b/UCH-2]
gi|440543147|emb|CCP68661.1| exoribonuclease R [Chlamydia trachomatis L2b/Canada2]
gi|440544038|emb|CCP69552.1| exoribonuclease R [Chlamydia trachomatis L2b/LST]
gi|440544928|emb|CCP70442.1| exoribonuclease R [Chlamydia trachomatis L2b/Ams1]
gi|440545818|emb|CCP71332.1| exoribonuclease R [Chlamydia trachomatis L2b/CV204]
gi|440914080|emb|CCP90497.1| exoribonuclease R [Chlamydia trachomatis L2b/Ams2]
gi|440914970|emb|CCP91387.1| exoribonuclease R [Chlamydia trachomatis L2b/Ams3]
gi|440915862|emb|CCP92279.1| exoribonuclease R [Chlamydia trachomatis L2b/Canada1]
gi|440916756|emb|CCP93173.1| exoribonuclease R [Chlamydia trachomatis L2b/Ams4]
gi|440917646|emb|CCP94063.1| exoribonuclease R [Chlamydia trachomatis L2b/Ams5]
Length = 694
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 175/404 (43%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHSLSVEE-----EHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +F+ QP Y+A I+
Sbjct: 537 RACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATL-YKAFII 579
>gi|237756945|ref|ZP_04585413.1| ribonuclease R [Sulfurihydrogenibium yellowstonense SS-5]
gi|237690896|gb|EEP60036.1| ribonuclease R [Sulfurihydrogenibium yellowstonense SS-5]
Length = 701
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 156/329 (47%), Gaps = 48/329 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT + ID + A + DDA+ A+ + + ++Y+H+AD + Y++ GS DK+A +
Sbjct: 242 NRKDLTKQICFTIDPESARDHDDAV-AIEKEGDKYRLYVHIADVSHYVKEGSAIDKEAFQ 300
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LP M PE+LA + SL+ E A T +++ G++ EY + S+I+
Sbjct: 301 RGNTYYLPERALHMLPERLASQLCSLKPREKRYAFTCEMLIDKKGNVVEYDIYESVIESK 360
Query: 304 YMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
LTY+ A ++ E E LK + E A + ++ + ++G+ID E++I
Sbjct: 361 AKLTYDQALGIIFGQPELEKAFPYLVKPLKHMKELAEILMKAKEKRGSIDFDMPESQILF 420
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
+ NP D P + A R++ E MI+ E +A + N YR + +
Sbjct: 421 DQYGNPYDVVPY-------ERHLAHRIIEEFMIIANETVAKHMEKNGYPFIYRVHEKPKL 473
Query: 414 D-VSAFAHL----------PEGPVRSSAIVKIMRAA------------AIDFRKPVRH-- 448
+ V AF L P+ V S I KI+ A A+ K R+
Sbjct: 474 EKVMAFVDLMAGLGYKVEYPKKDVDSKFIQKIIEMAVGTPEESLVRFLALRTMKQARYSP 533
Query: 449 ---GVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY D+ H
Sbjct: 534 ENIGHFGLASECYTHFTSPIRRYADVWVH 562
>gi|387790426|ref|YP_006255491.1| ribonuclease R [Solitalea canadensis DSM 3403]
gi|379653259|gb|AFD06315.1| ribonuclease R [Solitalea canadensis DSM 3403]
Length = 709
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 177/389 (45%), Gaps = 47/389 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R+D ++ + ID +A + DDA+S +L G ++ +H+AD + YI P ++
Sbjct: 247 TQEEIAKRRDFRNITTFTIDPIDAKDFDDAISFRKLDTGNYEIGVHIADVSHYILPDTIL 306
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A++RGTSV+L PM PE+L+ SLR E +T S V D +I
Sbjct: 307 DKEALERGTSVYLVDRVIPMLPERLSNGVCSLRPNE--EKLTFSAVFEIDEQANILSEWF 364
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++I TYE A E+L E A EL +L++ A + R + GAI+ T E +
Sbjct: 365 GRTVINSDRRFTYEEAQEVLEGKSSEYADELLMLNKIAYVLRDQRYKTGAINFETTEVKF 424
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------------------- 395
++ P I +YV+++ D A +L+ + M+L +A +
Sbjct: 425 RLDETGKP---IGVYVKERKD-AHKLIEDFMLLANRKVAEFVAKMGPKKRSYTFVYRVHD 480
Query: 396 -------GSFNNLA--LPYRGQPQSNIDVSAFAHL--------PEGPVRSSAIVKIMRAA 438
F+ A Y+ +S+ ++S + E V + ++ M A
Sbjct: 481 APDETMLTKFSEFAARFGYKINMKSHKEISKSLNFLMDDVTGKKEQNVLTQLAIRAM-AK 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
AI K H L Y FTSPIRRY D+L+H ++ A + P +A Q E M
Sbjct: 540 AIYTTKKSSHYGLAFDYYTHFTSPIRRYPDVLSH-RLLAHYLAKGKPANADQYEKMCEHS 598
Query: 499 NMQTRIARRLSNTSLRYWIIEFLRRQPKE 527
+ + A S++Y E+L+ E
Sbjct: 599 SQMEKRAAEAERASIKYKQAEYLQNNVGE 627
>gi|20807463|ref|NP_622634.1| exoribonuclease [Thermoanaerobacter tengcongensis MB4]
gi|20515989|gb|AAM24238.1| Exoribonucleases [Thermoanaerobacter tengcongensis MB4]
Length = 708
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 159/337 (47%), Gaps = 43/337 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT LK ID ++A +LDDA+ RL +G +Y+ +AD + Y++ G+ DK+A++R
Sbjct: 244 RVDLTKLKFVTIDGEDAKDLDDAVYVERLPNGNYLLYVSIADVSHYVKEGTNLDKEALRR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL GE ++TV + +++ G I ++ + SII+
Sbjct: 304 GCSVYFLDRVIPMLPPKLSNGICSLNPGEERLSLTVKMEINTRGEIVDHDIFESIIESKE 363
Query: 305 MLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY S ++L N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTSVYKILEENDEELIKRYSHLVEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I+ + + + A +++ E M+ E +A + + N+ YR +I+
Sbjct: 424 DEKGRPVDIVKV----ERNIAHKIIEEFMLAANETVAEHMHWLNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMRAAAIDFRKPV------------------ 446
+ F H + G + A+ ++R + V
Sbjct: 480 LAFNKFIHNLGYHIKGVEGGEIHPKALQDLIRQVRGKSEQKVVETLLLRSLKRARYSPED 539
Query: 447 -RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 540 IGHYALAAKYYTHFTSPIRRYPDLVIHRIIKEYINGK 576
>gi|188588711|ref|YP_001922180.1| ribonuclease R [Clostridium botulinum E3 str. Alaska E43]
gi|188498992|gb|ACD52128.1| ribonuclease R [Clostridium botulinum E3 str. Alaska E43]
Length = 746
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 175/370 (47%), Gaps = 47/370 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +L++ ID ++A +LDDA+S +L DG K+ +H+AD T Y+ ++ DK+A+KR
Sbjct: 252 RVDLRNLRMVTIDGEDAKDLDDAVSIEKLDDGNFKLGVHIADVTHYVRENNILDKEALKR 311
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P++L+ SL A++ +V+++ G++ ++ + S+IK +
Sbjct: 312 ATSVYLIDRVIPMLPKQLSNGICSLNPKVDRLALSCFMVINNKGTVVDHEIMESVIKTSE 371
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
+TY T++L N EE + K++ E + R+++GAID E++I
Sbjct: 372 RMTYTDVTKILRDNDEELIKKYDYLCDDFKLMEELCLILRNKRMKRGAIDFDFEESKIIL 431
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP---- 409
++ P D +P + + A +++ E M++C E +A + ++ L YR
Sbjct: 432 DEMGKPIDIKPY-------EREIANKIIEEFMLVCNETVAEHMFWSKLPFVYRVHETPDE 484
Query: 410 -------------------QSNIDVSAFAHLPE---GPVRSSAIVKIMRAAAIDFR---K 444
+++ + E G + + ++ + + R +
Sbjct: 485 EKLVKFKEFIYNLGYKINWSEDVNPKTLQSILEQVKGKKEETIVSTLLLRSMMQARYAPE 544
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRI 504
V H L Y FTSPIRRY DL H +K L GE +L + + + Q+
Sbjct: 545 CVGHFGLAAQYYCHFTSPIRRYPDLQIHRIIKEHLNGEIDDARFKKLVPIVDVASKQSSE 604
Query: 505 ARRLSNTSLR 514
R++ + R
Sbjct: 605 KERVAQEAER 614
>gi|187932190|ref|YP_001892175.1| ribonuclease II family protein [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187713099|gb|ACD31396.1| ribonuclease II family protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 618
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 192/390 (49%), Gaps = 25/390 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ++ L+
Sbjct: 454 DSIADMFATRKKLQRGKYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQLRNFLQH 511
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
+ SA +++ + + V++ + R+ S +W + +L + P + +++A ++ ++
Sbjct: 512 KE-MISAQEIDNIIAQVDIPMKSNRQTERFSNSHWKLVYLIQNP-DLEFQATVIEKLEKS 569
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + + + VS + D+++++
Sbjct: 570 RLMVSIAALAMTKKLSVSGKYDLNDQIKLQ 599
>gi|254372113|ref|ZP_04987606.1| ribonuclease II family protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151569844|gb|EDN35498.1| ribonuclease II family protein [Francisella novicida GA99-3549]
Length = 618
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 192/390 (49%), Gaps = 25/390 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + + + DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSKDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEIDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDKQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G +A + NN+++P+ QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVTVAQFCIQNNISVPFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ++ L+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSIHAGMGLEAYVQVTSPLRRYLDLIVHYQLRNFLQH 511
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
+ SA +++ + + V++ + R+ S +W + +L + P + +++A ++ ++
Sbjct: 512 KE-MISAQEIDNIIAQVDIPIKSNRQTERFSNSHWKLVYLIQNP-DLEFQATVIEKLEKG 569
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + + + VS + D+++++
Sbjct: 570 RLMVSIAALAMTKKLSVSGKYDLNDQIKLQ 599
>gi|62261367|gb|AAX77984.1| unknown protein [synthetic construct]
Length = 653
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 192/390 (49%), Gaps = 25/390 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 258 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSKKNKMWVHIADPSSSISFGDEVDLQARAR 314
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 315 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 372
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 373 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 423
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 424 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 479
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ++ L+
Sbjct: 480 DSIADMFATRKKLQRGRYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQLRNFLQH 537
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
+ SA +++ + + V++ + R+ S +W + +L + P + +++A ++ ++
Sbjct: 538 KE-MISAQEIDNIIAQVDIPIKSNRQTERFSNSHWKLVYLIQNP-DLEFQATVIEKLEKS 595
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + + + VS + D+++++
Sbjct: 596 RLMVSIAALAMTKKLSVSGKYDLNDQIKLQ 625
>gi|406672651|ref|ZP_11079876.1| ribonuclease R [Bergeyella zoohelcum CCUG 30536]
gi|405587195|gb|EKB60923.1| ribonuclease R [Bergeyella zoohelcum CCUG 30536]
Length = 719
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 171/385 (44%), Gaps = 46/385 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + R+D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ PG+L D
Sbjct: 256 EEEVKKRRDMRDVLTFTIDPKDAKDFDDALSIRQLKNGNWEIGVHIADVSHYVTPGTLLD 315
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A R TS++L PM PE L+ + SLR E + L+ I + +
Sbjct: 316 EEAYSRATSIYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFELNDKAEIIKQWFGRT 375
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+I TYE A E + + A E+ +L + A + + R+++GAI E R +
Sbjct: 376 VIHSDRRFTYEEAQERIETGKGDLAEEILVLDKLAKILREDRVKKGAITFDRSEVRFHL- 434
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN------NLALPYR----- 406
E+ EP + +Y + D A L+ E M+L ++ Y S N L YR
Sbjct: 435 -DENNEP-VGVYFKTSKD-ANHLIEEFMLLANRKVSEYISINAKNEVTGLTFIYRVHDDP 491
Query: 407 ---------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAA 439
+ +N+ S E + + A+ + + A
Sbjct: 492 DPTKLEALRDFVATFGYKMNLSNSKKVAESMNNLLKSVKGKGEENMIETLAMRSM--SKA 549
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ P+ H LG Y FTSPIRRY DL+AH ++ L P A E N
Sbjct: 550 VYSTDPIGHYGLGFAYYTHFTSPIRRYPDLIAHRLLQHYLDKGKSPNKAEYEEKCKHCSN 609
Query: 500 MQTRIARRLSNTSLRYWIIEFLRRQ 524
M+ R+A S++Y ++F+ +
Sbjct: 610 ME-RLASDAERDSIKYMQVKFMEQH 633
>gi|251780958|ref|ZP_04823878.1| ribonuclease R [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243085273|gb|EES51163.1| ribonuclease R [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 746
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 176/370 (47%), Gaps = 47/370 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +L++ ID ++A +LDDA+S +L DG K+ +H+AD T Y+ ++ DK+A+KR
Sbjct: 252 RVDLRNLRMVTIDGEDAKDLDDAVSIEKLDDGSFKLGVHIADVTHYVRENNILDKEALKR 311
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P++L+ SL A++ +V+++ G++ ++ + S+IK +
Sbjct: 312 ATSVYLIDRVIPMLPKQLSNGICSLNPKVDRLALSCFMVINNKGTVVDHEIMESVIKTSE 371
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
+TY T++L N EE + K++ E + + R+++GAID E++I
Sbjct: 372 RMTYTDVTKILRDNDEELIKKYDYLCDDFKLMEELCLILRRKRMKRGAIDFDFEESKIIL 431
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP---- 409
++ P D +P + + A +++ E M++C E +A + ++ L YR
Sbjct: 432 DEMGKPIDIKPY-------EREIANKIIEEFMLVCNETVAEHMFWSKLPFVYRVHETPDE 484
Query: 410 -------------------QSNIDVSAFAHLPE---GPVRSSAIVKIMRAAAIDFR---K 444
+++ + E G + + ++ + + R +
Sbjct: 485 EKLVKFKEFIYNLGYKINWSEDVNPKTLQSILEQVKGKKEETIVSTLLLRSMMQARYAPE 544
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRI 504
V H L Y FTSPIRRY DL H +K L GE +L + + + Q+
Sbjct: 545 CVGHFGLAAQYYCHFTSPIRRYPDLQIHRIIKEHLNGEIDDARFKKLVPIVDVASKQSSE 604
Query: 505 ARRLSNTSLR 514
R++ + R
Sbjct: 605 KERVAQEAER 614
>gi|257126741|ref|YP_003164855.1| ribonuclease R [Leptotrichia buccalis C-1013-b]
gi|257050680|gb|ACV39864.1| ribonuclease R [Leptotrichia buccalis C-1013-b]
Length = 761
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 173/393 (44%), Gaps = 59/393 (15%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L NRKDL HL + ID +A +LDDA+ + +DG K+++ +AD + Y+ + D
Sbjct: 282 DELKNRKDLRHLDIITIDGSDAKDLDDAVYVEKTEDG-YKLFVSIADVSYYVRENTELDM 340
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
DA+KRG S++L PM P KL+ SL E TV + L G + + S+
Sbjct: 341 DALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFTVEMDLDKRGKVVKNDFYKSV 400
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILS--------------EAAALRLQWRLQQGAI 345
IK Y +TYE+ +L N EE E K+L E + + + ++G+I
Sbjct: 401 IKSKYRMTYENVNTILEKN-EESEEYKVLYDKYRKIDEMLKNMLELSKIIRNNKKRRGSI 459
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
D E ++ + D + V A R++ + M++ E +A + + Y
Sbjct: 460 DFELPEIKVVL----DENKAVKDIVLRSRGEAERIIEDFMVIANETVAEKLFWEEIPAIY 515
Query: 406 R--------------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVK 433
R G+ Q+ I+ + LPEG + I++
Sbjct: 516 RVHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERT--TGLPEGYLIHKLILR 573
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH----YQVKACLRGESPPFSAG 489
M+ A K + H L Y+ FTSPIRRY DL+ H ++ + +
Sbjct: 574 AMQRARY-ANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRMLGRSIEKFMNEKEKAKYGA 632
Query: 490 QLEGMASIVNMQTRIARRLSNTSLRYWIIEFLR 522
E +AS ++ R+A +L S++ +IE+++
Sbjct: 633 NFEAIASSISRTERVADKLEEDSVKIKLIEYMQ 665
>gi|386360571|ref|YP_006058816.1| ribonuclease R [Thermus thermophilus JL-18]
gi|383509598|gb|AFH39030.1| ribonuclease R [Thermus thermophilus JL-18]
Length = 743
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 162/342 (47%), Gaps = 45/342 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E L R+D L+V+ ID +A + DDA+ RL G +V +H+AD + Y++ G
Sbjct: 216 LEIPEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPKG-YRVGVHIADVSHYVKEG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
SL D++A RGTSV+LP PM PE+L+ SLR GE ++V V L D +
Sbjct: 275 SLLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELLHLNLEEEA----ELKILSEAAALRLQWRLQQGAIDT 347
+I+ LTY E+ E L EE A +L++L + + RL++GA+D
Sbjct: 335 FREGVIRSVARLTYTEVEAFAEGFGLP-EEHAFLAEDLRLLLDLTQRMREKRLKEGALDF 393
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYR 406
E +++V + L++ QA+P R L+ E+M+L +A Y L +R
Sbjct: 394 GFPEVKVEVGEEGE------LHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLFR 447
Query: 407 GQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ D A A L PE PV + +++ +R A
Sbjct: 448 VHEEPVQDAYEKLRQALARLGYTLPPKLSGHALQKALLASRGRPEEPVVAYLVLRSLRLA 507
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ H L + Y+ FTSPIRRY DL+ H +KA LR
Sbjct: 508 RYAPEN-LGHFGLAMEHYLHFTSPIRRYPDLVVHRVLKAALR 548
>gi|188997015|ref|YP_001931266.1| ribonuclease R [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932082|gb|ACD66712.1| ribonuclease R [Sulfurihydrogenibium sp. YO3AOP1]
Length = 701
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT + ID + A + DDA+ A+ + + ++Y+H+AD + Y++ GS+ DK+A +
Sbjct: 242 NRKDLTKQICFTIDPESARDHDDAV-AIEKEGDKYRLYVHIADVSHYVKEGSVIDKEAFQ 300
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LP M PE+LA + SL+ E A T +++ G++ EY + S+I+
Sbjct: 301 RGNTYYLPERALHMLPERLASQLCSLKPREKRYAFTCEMLIDKKGNVVEYDIYESVIESK 360
Query: 304 YMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
LTY+ A ++ E E LK + E A + ++ + ++G+ID E++I
Sbjct: 361 AKLTYDQALGIILGQPELEKAFPYLVKPLKHMKELAEILMKAKEKRGSIDFDMPESQILF 420
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
+ NP D P + A R++ E MI+ E +A + N YR + +
Sbjct: 421 DQYGNPYDVVPY-------ERHLANRIIEEFMIIANETVAKHMEKNGYPFIYRVHEKPKL 473
Query: 414 D-VSAFAHL----------PEGPVRSSAIVKIMRAA------------AIDFRKPVRH-- 448
+ V AF L P+ V S I KI+ A A+ K R+
Sbjct: 474 EKVMAFVDLIAGLGYKVEYPKKDVDSKFIQKIIEMAVGTPEESLVRFLALRTMKQARYSP 533
Query: 449 ---GVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY D+ H
Sbjct: 534 ENIGHFGLASECYTHFTSPIRRYADVWVH 562
>gi|312621629|ref|YP_004023242.1| ribonuclease r [Caldicellulosiruptor kronotskyensis 2002]
gi|312202096|gb|ADQ45423.1| ribonuclease R [Caldicellulosiruptor kronotskyensis 2002]
Length = 716
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 174/359 (48%), Gaps = 54/359 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++L R DL +L ++ ID ++A + DDA+S +L +G + +H+AD + Y++P +
Sbjct: 245 TEEDLEGRVDLRNLTIFTIDGEDAKDFDDAVSIQKLPNGNYLLGVHIADVSHYVKPNTHL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A KRGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 DKEAYKRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVMMEIDKQGNVVKHDI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWRLQQGA 344
S+I+ +TY + T++L EE+ E L+++ E A + + R+++GA
Sbjct: 363 FESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALILREKRMKRGA 419
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ET++ + P ++ + + +++ E M++C E +A + + N+
Sbjct: 420 LDFDFDETKVILDKNGKPIDVVRY----ELTISNKIIEEFMLICNETVANHFYWLNVPFL 475
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 476 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPEERVIHTLCLR 535
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
++ A + + H L Y FTSPIRRY DL+ H +K L+G+ A +L+
Sbjct: 536 SLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIHRIMKDVLKGKMTEKKAQKLK 593
>gi|56707413|ref|YP_169309.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669884|ref|YP_666441.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|254370890|ref|ZP_04986895.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|379716606|ref|YP_005304942.1| RNase R-related protein [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725289|ref|YP_005317475.1| RNase R-related protein [Francisella tularensis subsp. tularensis
TI0902]
gi|385794021|ref|YP_005830427.1| Ribonuclease II family protein [Francisella tularensis subsp.
tularensis NE061598]
gi|421754880|ref|ZP_16191840.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 80700075]
gi|56603905|emb|CAG44890.1| Ribonuclease II family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320217|emb|CAL08273.1| Ribonuclease II family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151569133|gb|EDN34787.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|282158556|gb|ADA77947.1| Ribonuclease II family protein [Francisella tularensis subsp.
tularensis NE061598]
gi|377826738|gb|AFB79986.1| RNase R-related protein [Francisella tularensis subsp. tularensis
TI0902]
gi|377828283|gb|AFB78362.1| RNase R-related protein [Francisella tularensis subsp. tularensis
TIGB03]
gi|409089753|gb|EKM89787.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 80700075]
Length = 618
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 192/390 (49%), Gaps = 25/390 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSKKNKMWVHIADPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ++ L+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQLRNFLQH 511
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
+ SA +++ + + V++ + R+ S +W + +L + P + +++A ++ ++
Sbjct: 512 KE-MISAQEIDNIIAQVDIPIKSNRQTERFSNSHWKLVYLIQNP-DLEFQATVIEKLEKS 569
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + + + VS + D+++++
Sbjct: 570 RLMVSIAALAMTKKLSVSGKYDLNDQIKLQ 599
>gi|94265606|ref|ZP_01289350.1| Exoribonuclease II [delta proteobacterium MLMS-1]
gi|93453885|gb|EAT04243.1| Exoribonuclease II [delta proteobacterium MLMS-1]
Length = 663
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 192/408 (47%), Gaps = 29/408 (7%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL L V ID +LDDAL R Q +V IH+AD +++PGS+ A++
Sbjct: 272 GRRDLRQLPVMTIDGASTRDLDDALHIQR-QGANFQVGIHIADVAHFVKPGSILFNAAVR 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++ P PM P +L+ SL G A++ + + G I + S++ ++++
Sbjct: 331 RVTSLYFPEGQVPMLPPRLSENLCSLLAGRPRPAMSFLLTITPQGEIVDSSIEATVVEVK 390
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
L Y+ ELL + +L LS+ R RL+ GA+ + IK+ E
Sbjct: 391 KRLDYDQVEELLAAGDRDLQDLLGLSQTLRRR---RLEAGALLLPIPDVNIKLD--EQGR 445
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
P ++L ED PA LVSE+M+L A Y + +A +R Q + + L +
Sbjct: 446 PAVSL--EDVDLPARLLVSELMVLANMQAAEYVAQQQVAGLFRSQDEPH------QRLVQ 497
Query: 424 GPVRSSAIVKIMR-----AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
G I I R +P RH +G Y TSPIRR +DL+ +Q+ A
Sbjct: 498 G--YEEDIFTIWRQRKQLKPGQLLTQPGRHSGVGAASYTTITSPIRRLLDLVMQHQLYAL 555
Query: 479 LRGESPPFSAGQ-LEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
+ FS + L+ +A+I Q R A ++S RYW++++L + + + AL++
Sbjct: 556 KARQGARFSEPELLDLIAAISATQVR-ANQVSRERSRYWLLKYLAAK-QGKTVDALVVAA 613
Query: 538 IKDRTAALL---LVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDII 582
R A +L L+E L + + A G+ V VK+ + P D +
Sbjct: 614 GPRRVALVLTDCLLETDLPPNRGLDIKA--GEVVPVKISKVDPLDGTL 659
>gi|134302635|ref|YP_001122604.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421752529|ref|ZP_16189553.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis AS_713]
gi|421754396|ref|ZP_16191369.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 831]
gi|421758127|ref|ZP_16194985.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 80700103]
gi|421759954|ref|ZP_16196778.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 70102010]
gi|424675280|ref|ZP_18112187.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 70001275]
gi|134050412|gb|ABO47483.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409084682|gb|EKM84849.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 831]
gi|409084957|gb|EKM85114.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis AS_713]
gi|409089871|gb|EKM89903.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 70102010]
gi|409090384|gb|EKM90403.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 80700103]
gi|417434035|gb|EKT89007.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 70001275]
Length = 618
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 192/390 (49%), Gaps = 25/390 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ++ L+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQLRNFLQH 511
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
+ SA +++ + + V++ + R+ S +W + +L + P + +++A ++ ++
Sbjct: 512 KE-MISAQEIDNIIAQVDIPIKSNRQTERFSNSHWKLVYLIQNP-DLEFQATVIEKLEKS 569
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + + + VS + D+++++
Sbjct: 570 RLMVSIAALAMTKKLSVSGKYDLNDQIKLQ 599
>gi|237802822|ref|YP_002888016.1| exoribonuclease II [Chlamydia trachomatis B/Jali20/OT]
gi|237804744|ref|YP_002888898.1| exoribonuclease II [Chlamydia trachomatis B/TZ1A828/OT]
gi|376282403|ref|YP_005156229.1| exoribonuclease II [Chlamydia trachomatis A2497]
gi|385270088|ref|YP_005813248.1| exoribonuclease II [Chlamydia trachomatis A2497]
gi|231273044|emb|CAX09957.1| exoribonuclease II [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274056|emb|CAX10850.1| exoribonuclease II [Chlamydia trachomatis B/Jali20/OT]
gi|347975228|gb|AEP35249.1| Exoribonuclease II [Chlamydia trachomatis A2497]
gi|371908433|emb|CAX09063.1| exoribonuclease II [Chlamydia trachomatis A2497]
gi|438690327|emb|CCP49584.1| exoribonuclease R [Chlamydia trachomatis A/7249]
gi|438691411|emb|CCP48685.1| exoribonuclease R [Chlamydia trachomatis A/5291]
gi|438692784|emb|CCP47786.1| exoribonuclease R [Chlamydia trachomatis A/363]
Length = 694
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 175/404 (43%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----EHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +F+ QP Y+A I+
Sbjct: 537 RACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATL-YKAFII 579
>gi|384176988|ref|YP_005558373.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349596212|gb|AEP92399.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 779
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 160/342 (46%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L+DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLEDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|76789128|ref|YP_328214.1| exoribonuclease II [Chlamydia trachomatis A/HAR-13]
gi|76167658|gb|AAX50666.1| exoribonuclease II [Chlamydia trachomatis A/HAR-13]
Length = 694
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 175/404 (43%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----EHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +F+ QP Y+A I+
Sbjct: 537 RACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATL-YKAFII 579
>gi|296330421|ref|ZP_06872901.1| ribonuclease R [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305675967|ref|YP_003867639.1| ribonuclease R [Bacillus subtilis subsp. spizizenii str. W23]
gi|296152424|gb|EFG93293.1| ribonuclease R [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305414211|gb|ADM39330.1| ribonuclease R [Bacillus subtilis subsp. spizizenii str. W23]
Length = 779
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 159/342 (46%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMNRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGDIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|398304853|ref|ZP_10508439.1| ribonuclease R [Bacillus vallismortis DV1-F-3]
Length = 779
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 159/342 (46%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMNRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGDIHPRALQSVLDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|15605122|ref|NP_219907.1| exoribonuclease II [Chlamydia trachomatis D/UW-3/CX]
gi|385240836|ref|YP_005808677.1| exoribonuclease II [Chlamydia trachomatis G/11222]
gi|385243604|ref|YP_005811450.1| exoribonuclease II [Chlamydia trachomatis D-EC]
gi|385244484|ref|YP_005812328.1| exoribonuclease II [Chlamydia trachomatis D-LC]
gi|7674334|sp|O84402.1|RNR_CHLTR RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|3328824|gb|AAC67994.1| Ribonuclease Family [Chlamydia trachomatis D/UW-3/CX]
gi|296436844|gb|ADH19014.1| exoribonuclease II [Chlamydia trachomatis G/11222]
gi|297748527|gb|ADI51073.1| Exoribonuclease II [Chlamydia trachomatis D-EC]
gi|297749407|gb|ADI52085.1| Exoribonuclease II [Chlamydia trachomatis D-LC]
gi|440527992|emb|CCP53476.1| exoribonuclease R [Chlamydia trachomatis D/SotonD5]
gi|440528883|emb|CCP54367.1| exoribonuclease R [Chlamydia trachomatis D/SotonD6]
gi|440532457|emb|CCP57967.1| exoribonuclease R [Chlamydia trachomatis G/SotonG1]
Length = 694
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 175/404 (43%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----EHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +F+ QP Y+A I+
Sbjct: 537 RACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATL-YKAFII 579
>gi|255348762|ref|ZP_05380769.1| exoribonuclease II [Chlamydia trachomatis 70]
gi|255503302|ref|ZP_05381692.1| exoribonuclease II [Chlamydia trachomatis 70s]
gi|385241768|ref|YP_005809608.1| exoribonuclease II [Chlamydia trachomatis E/11023]
gi|385245375|ref|YP_005814198.1| exoribonuclease II [Chlamydia trachomatis E/150]
gi|386262751|ref|YP_005816030.1| exoribonuclease II [Chlamydia trachomatis Sweden2]
gi|289525439|emb|CBJ14916.1| exoribonuclease II [Chlamydia trachomatis Sweden2]
gi|296434991|gb|ADH17169.1| exoribonuclease II [Chlamydia trachomatis E/150]
gi|296438711|gb|ADH20864.1| exoribonuclease II [Chlamydia trachomatis E/11023]
gi|440529775|emb|CCP55259.1| exoribonuclease R [Chlamydia trachomatis E/SotonE4]
gi|440530674|emb|CCP56158.1| exoribonuclease R [Chlamydia trachomatis E/SotonE8]
gi|440535142|emb|CCP60652.1| exoribonuclease R [Chlamydia trachomatis E/Bour]
Length = 694
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 175/404 (43%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISRTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----EHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +F+ QP Y+A I+
Sbjct: 537 RACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATL-YKAFII 579
>gi|342731884|ref|YP_004770723.1| exoribonuclease R [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|342329339|dbj|BAK55981.1| exoribonuclease R [Candidatus Arthromitus sp. SFB-mouse-Japan]
Length = 692
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 40/341 (11%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
++ ED L +R+DL L + ID +A +LDDA+ R + I + +H+AD + Y+
Sbjct: 228 MEVIEDELSSRRDLRDLPIVTIDGSDAKDLDDAVYVKRQGEEYI-LSVHIADVSHYVRYR 286
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A+KRGTSV+L PM P++L+ + SL G ++ +V++ G + Y
Sbjct: 287 SELDKEALKRGTSVYLIDKVVPMLPKELSNDLCSLNSGTDKLTLSCEMVINKSGEVTRYD 346
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATL 350
+ S+I+ Y LTY++ +++ N E +++ + + A + R ++GAI+
Sbjct: 347 IFESVIRTKYRLTYDNVQDIIDDNTNEFSDIYEMIFNMKDLAEILNSRRERRGAINFDFP 406
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E +I + D I + ++ E M+LC E IA + F N PYR +
Sbjct: 407 ECKISLNEDGDVLDISAF----MRKFSHNIIEEFMLLCNETIAEHMFFLNYPFPYRIHEE 462
Query: 411 -------------SNIDVS-----------------AFAHLPEGPVRSSAIVKIMRAAAI 440
N+D + F E S I++ M A
Sbjct: 463 PDMEKIMNLRDILHNLDYNFRINDKVYSNQIQKVLMHFKGKDEEMFLSKFILRSMSKARY 522
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ + H L Y FTSPIRRY DL+AH +K L+G
Sbjct: 523 -LKDCIGHFGLSTKYYCHFTSPIRRYPDLVAHRIIKLSLKG 562
>gi|255311203|ref|ZP_05353773.1| exoribonuclease II [Chlamydia trachomatis 6276]
gi|255317504|ref|ZP_05358750.1| exoribonuclease II [Chlamydia trachomatis 6276s]
gi|385239913|ref|YP_005807755.1| exoribonuclease II [Chlamydia trachomatis G/9768]
gi|385242690|ref|YP_005810529.1| exoribonuclease II [Chlamydia trachomatis G/9301]
gi|385246299|ref|YP_005815121.1| exoribonuclease II [Chlamydia trachomatis G/11074]
gi|296435918|gb|ADH18092.1| exoribonuclease II [Chlamydia trachomatis G/9768]
gi|296437778|gb|ADH19939.1| exoribonuclease II [Chlamydia trachomatis G/11074]
gi|297140278|gb|ADH97036.1| exoribonuclease II [Chlamydia trachomatis G/9301]
gi|440533350|emb|CCP58860.1| exoribonuclease R [Chlamydia trachomatis Ia/SotonIa1]
gi|440534244|emb|CCP59754.1| exoribonuclease R [Chlamydia trachomatis Ia/SotonIa3]
Length = 694
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 175/404 (43%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----EHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +F+ QP Y+A I+
Sbjct: 537 RACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATL-YKAFII 579
>gi|449109546|ref|ZP_21746180.1| hypothetical protein HMPREF9722_01876 [Treponema denticola ATCC
33520]
gi|448958789|gb|EMB39517.1| hypothetical protein HMPREF9722_01876 [Treponema denticola ATCC
33520]
Length = 623
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 183/392 (46%), Gaps = 28/392 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENDSQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+ + G
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQLLKFIDGNEV 523
Query: 485 PFSAGQLEGMAS--IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+ L +A+ I A R S ++W + +L + P + Q A+IL IK+ T
Sbjct: 524 MKTDDLLMRIAAGDIAGKNCSYAER---ASRQHWTLIYLLQNP-DWQGEAVILETIKN-T 578
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
A + + +G + + I + + VK E+
Sbjct: 579 ARISIPSIGYETEMRLKKELSINERINVKAED 610
>gi|253681987|ref|ZP_04862784.1| ribonuclease R [Clostridium botulinum D str. 1873]
gi|416353469|ref|ZP_11681529.1| ribonuclease R [Clostridium botulinum C str. Stockholm]
gi|253561699|gb|EES91151.1| ribonuclease R [Clostridium botulinum D str. 1873]
gi|338195555|gb|EGO87820.1| ribonuclease R [Clostridium botulinum C str. Stockholm]
Length = 746
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 171/367 (46%), Gaps = 41/367 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLT + + ID ++A +LDDA+S +L +G + +H+AD + Y++ S D++A+KR
Sbjct: 246 REDLTDVTMVTIDGEDAKDLDDAVSIKKLDNGNYLLGVHIADVSHYVKEKSPLDREALKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P++L+ SL A+T + ++ G + +Y + SIIK
Sbjct: 306 ATSVYLINKVIPMLPKELSNGICSLNPKVNRLAMTCFMEINDKGKVVDYRITKSIIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L EE E K++ + + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDKDEETIEKYKYLYEDFKLMEKLCEILYKKRISRGAIDFEFEESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
+ P I++ ++A A R++ E M++C E +A + + L YR + +
Sbjct: 426 DDNGKP---IDVKPYERA-IANRIIEEFMLVCNETVAEHMYWTKLPFVYRIHEDPDEEKL 481
Query: 415 --VSAFAH------LPEGPVRSSAIVKIMRAAAIDFRKPVRH-----------------G 449
FA+ P V A+ +I+ + + V + G
Sbjct: 482 QRFREFAYNLGYFIKPNKEVHPKALQEIIESVKGKKEETVVNTLLLRSLKQARYAPQCVG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL+ H +K L G QLE +MQ+ R
Sbjct: 542 HFGLAAKFYCHFTSPIRRYPDLIIHRIIKESLDGTIDEKRFRQLENAVDYASMQSSDMER 601
Query: 508 LSNTSLR 514
L+ + R
Sbjct: 602 LAMEAER 608
>gi|431931302|ref|YP_007244348.1| exoribonuclease R [Thioflavicoccus mobilis 8321]
gi|431829605|gb|AGA90718.1| exoribonuclease R [Thioflavicoccus mobilis 8321]
Length = 607
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 166/352 (47%), Gaps = 47/352 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL YAID + ++ DDALS DG I +++HVAD + P S +++A
Sbjct: 231 ERLDLTHLAAYAIDDEGNEDPDDALSL----DGDI-LWVHVADVAALVSPDSEMEREARA 285
Query: 244 RGTSVFLPTATYPMFPEKL-AMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
RG +++LP M P + A G+ L+ EV A++ + G V+ + ++
Sbjct: 286 RGANLYLPEGVVNMLPSGVTARLGLGLQ--EVSPALSFGFRCSATGEPINLQVERTWVR- 342
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
LTYE +EE + + AA +R ++ A A++E
Sbjct: 343 VQRLTYE--------GVEERIDAPPFAAIAAFLTPFRTRREARQAASIEL---------- 384
Query: 363 EPIINLYVED---QADPAMRL-----VSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
P +++ V D + P RL V++ M++ GEA A + + + +PY QP +
Sbjct: 385 -PEVSVRVRDGGVEVRPLARLRSRALVTDAMLMAGEAAAAFCREHEIPIPYACQPAPSS- 442
Query: 415 VSAFAHLPEGPVRSSAIVKIMRAAAID--FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
PE P S + R R+P H LGLP Y + TSP+RRY DLL H
Sbjct: 443 -------PETPTELSGMYAYRRKLKPTRLAREPEPHAGLGLPVYTRTTSPLRRYSDLLVH 495
Query: 473 YQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQ 524
+Q++A LRGES P +A + + + + RR S ++W + FLR Q
Sbjct: 496 HQLRAWLRGES-PLTADAVMTRIAEADTAASLVRRAERLSNQHWKLVFLRSQ 546
>gi|389858966|ref|YP_006361207.1| exoribonuclease II [Chlamydia trachomatis E/SW3]
gi|380250915|emb|CCE12676.1| exoribonuclease II [Chlamydia trachomatis E/SW3]
Length = 694
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 175/404 (43%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISRTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----EHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +F+ QP Y+A I+
Sbjct: 537 RACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATL-YKAFII 579
>gi|452973383|gb|EME73205.1| ribonuclease R [Bacillus sonorensis L12]
Length = 764
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 169/358 (47%), Gaps = 49/358 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ GS D
Sbjct: 242 EQDLSGRRDLRDQTIVTIDGADAKDLDDAVTVTKLKNGHYKLGVHIADVSHYVTEGSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A +RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTMSCEMTINRQGQVIEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE E + + E AA+ + R+++GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKEKYEALVPMFQDMEELAAILREKRMERGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E V + A +L+ E M++ E +A + + ++ YR
Sbjct: 422 EAKVLV----DEEGAAKDIVLRERSTAEKLIEEFMLVANETVAEHFHWMDVPFIYRIHED 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
+ + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PDQEKLQKFLEFVTTFGYVVKGAAGSIHPKALQKVLDDVRDTPEEAVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL-RGESPPFSAGQLEGM 494
D P G GL Y FTSPIRRY DL+ H ++ L +G++ + G+ G+
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIQGKTDEVTKGKWAGL 592
>gi|440525316|emb|CCP50567.1| exoribonuclease R [Chlamydia trachomatis K/SotonK1]
Length = 694
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 175/404 (43%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----EHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +F+ QP Y+A I+
Sbjct: 537 RACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATL-YKAFII 579
>gi|384455308|ref|YP_005667901.1| ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417959002|ref|ZP_12601877.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-1]
gi|417964521|ref|ZP_12606235.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-4]
gi|417968503|ref|ZP_12609514.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-co]
gi|418372131|ref|ZP_12964226.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|346983649|dbj|BAK79325.1| ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380334398|gb|EIA24815.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-1]
gi|380339518|gb|EIA28245.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-co]
gi|380341111|gb|EIA29616.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-4]
gi|380342737|gb|EIA31170.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 692
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 40/341 (11%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
++ ED L +R+DL L + ID +A +LDDA+ R + I + +H+AD + Y+
Sbjct: 228 MEVIEDELSSRRDLRDLPIVTIDGSDAKDLDDAVYVKRQGEEYI-LSVHIADVSHYVRYR 286
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A+KRGTSV+L PM P++L+ + SL G ++ +V++ G + Y
Sbjct: 287 SELDKEALKRGTSVYLIDKVVPMLPKELSNDLCSLNSGTDKLTLSCEMVINKSGEVTRYD 346
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATL 350
+ S+I+ Y LTY++ +++ N E +++ + + A + R ++GAI+
Sbjct: 347 IFESVIRTKYRLTYDNVQDIIDDNTNEFSDIYEMIFNMKDLAEILNSRRERRGAINFDFP 406
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E +I + D I + ++ E M+LC E IA + F N PYR +
Sbjct: 407 ECKISLNEDGDVLDISAF----MRKFSHNIIEEFMLLCNETIAEHMFFLNYPFPYRIHEE 462
Query: 411 -------------SNIDVS-----------------AFAHLPEGPVRSSAIVKIMRAAAI 440
N+D + F E S I++ M A
Sbjct: 463 PDMEKIMNLRDILHNLDYNFRINDKVYSNQIQKVLMHFKGKDEEMFLSKFILRSMSKARY 522
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ + H L Y FTSPIRRY DL+AH +K L+G
Sbjct: 523 -LKDCIGHFGLSTKYYCHFTSPIRRYPDLVAHRIIKLSLKG 562
>gi|406966972|gb|EKD92195.1| hypothetical protein ACD_29C00127G0001 [uncultured bacterium]
Length = 726
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 167/363 (46%), Gaps = 43/363 (11%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L NRKDL H+ ID ++A + DDA+ + + + + +AD Y++P + D +
Sbjct: 268 DLNNRKDLRHIPFVTIDGEDARDFDDAVFCEFIDGDKWRALVAIADVAYYVKPNTALDIE 327
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV--SVVLHSDGSIAEYSVDNS 298
A RG SV+ P+ PM PEKL+ + SL+ C+ +T+ ++L ++G++ EY DN+
Sbjct: 328 AQLRGNSVYFPSRVIPMLPEKLSNDLCSLKAN--CDRLTIVCEMILDANGNMLEYHFDNA 385
Query: 299 IIKPTYMLTY-ESATELLHLNLEEE---AELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+I LTY + A E+ N +E ++ L + + R +GAID T+ET+I
Sbjct: 386 VIFSKARLTYTQVAAEINGENSIDENLKKPIQNLYQFFKILFTQRQLRGAIDFETIETQI 445
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-------- 406
DP I+ V+ + A R++ EMM+L + A + L YR
Sbjct: 446 LF----DPNGKIDRIVQRHRNVAHRIIEEMMLLANQTTAHFLETLQLPTIYRVHDLPDDT 501
Query: 407 ------------------GQPQSNIDVSAF----AHLPEGPVRSSAIVKIMRAAAIDFRK 444
G + +D + A+ P+ + + +++ M+ A
Sbjct: 502 KLLALRDFLKAFGLVLPGGDKPTALDYAKLLKHVANRPDAHLIQTVMLRSMKQAIYTVEN 561
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRI 504
G L GY FTSPIRRY DLL H +K ++ L+ M +I ++
Sbjct: 562 RGHFG-LSYEGYCHFTSPIRRYPDLLIHRALKYAIQKRKASKFIYNLDEMETIAEHCSQT 620
Query: 505 ARR 507
RR
Sbjct: 621 ERR 623
>gi|312126880|ref|YP_003991754.1| ribonuclease r [Caldicellulosiruptor hydrothermalis 108]
gi|311776899|gb|ADQ06385.1| ribonuclease R [Caldicellulosiruptor hydrothermalis 108]
Length = 716
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 174/359 (48%), Gaps = 54/359 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++L R DL +L ++ ID ++A + DDA+S +L +G + +H+AD + Y++P +
Sbjct: 245 TEEDLEGRVDLRNLTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTHL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A +RGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 DKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEIDKQGNVVKHDI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWRLQQGA 344
S+I+ +TY + T++L EE+ E L+++ E A + + R+++GA
Sbjct: 363 FESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALILREKRMKRGA 419
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ET++ + P +I + + +++ E M++C E +A + + N+
Sbjct: 420 LDFDFDETKVILDKNGKPIDVIRY----ELTISNKIIEEFMLICNETVANHFYWLNVPFL 475
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 476 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPEERVIHTLCLR 535
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
++ A + + H L Y FTSPIRRY DL+ H +K L+G+ A +L+
Sbjct: 536 SLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIHRIMKDVLKGKMTEKKAQKLK 593
>gi|418016724|ref|ZP_12656288.1| ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|345505697|gb|EGX27992.1| ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-NYU]
Length = 696
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 40/341 (11%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
++ ED L +R+DL L + ID +A +LDDA+ R + I + +H+AD + Y+
Sbjct: 232 MEVIEDELSSRRDLRDLPIVTIDGSDAKDLDDAVYVKRQGEEYI-LSVHIADVSHYVRYR 290
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A+KRGTSV+L PM P++L+ + SL G ++ +V++ G + Y
Sbjct: 291 SELDKEALKRGTSVYLIDKVVPMLPKELSNDLCSLNSGTDKLTLSCEMVINKSGEVTRYD 350
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATL 350
+ S+I+ Y LTY++ +++ N E +++ + + A + R ++GAI+
Sbjct: 351 IFESVIRTKYRLTYDNVQDIIDDNTNEFSDIYEMIFNMKDLAEILNSRRERRGAINFDFP 410
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E +I + D I + ++ E M+LC E IA + F N PYR +
Sbjct: 411 ECKISLNEDGDVLDISAF----MRKFSHNIIEEFMLLCNETIAEHMFFLNYPFPYRIHEE 466
Query: 411 -------------SNIDVS-----------------AFAHLPEGPVRSSAIVKIMRAAAI 440
N+D + F E S I++ M A
Sbjct: 467 PDMEKIMNLRDILHNLDYNFRINDKVYSNQIQKVLMHFKGKDEEMFLSKFILRSMSKARY 526
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ + H L Y FTSPIRRY DL+AH +K L+G
Sbjct: 527 -LKDCIGHFGLSTKYYCHFTSPIRRYPDLVAHRIIKLSLKG 566
>gi|387823702|ref|YP_005823173.1| ribonuclease II family protein [Francisella cf. novicida 3523]
gi|328675301|gb|AEB27976.1| ribonuclease II family protein [Francisella cf. novicida 3523]
Length = 618
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 197/395 (49%), Gaps = 35/395 (8%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT+LK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTYLKAYAIDDEGSNDPDDAIS---WDTQKNKMWVHIADPSSSINFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V L G I++ + S IK T
Sbjct: 289 GSNLYVPEKIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRLDDKGDISDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
+YE E + + EL + A RL +GA++ E +I + + ++ +
Sbjct: 347 -RYSYEFVEENI-----DALELGDIVNYAKYFTDKRLSKGAVELDFPEIKISLDDNKNVK 400
Query: 364 ----PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
P +N + LV + M++ G A+A + NN+++P+ QP+ +++
Sbjct: 401 LTDLPRLN---------SRTLVRDTMLMAGVAVAQFCIENNISVPFSTQPEHDLEQDGLE 451
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGV---LGLPGYVQFTSPIRRYMDLLAHYQVK 476
+L + K+ R + +H + +GL YVQ TSP+RRY+DL+ HYQ++
Sbjct: 452 NLDSIADMFATRKKLQRG-----KYSTQHSIHAGMGLEAYVQVTSPLRRYLDLIVHYQLR 506
Query: 477 ACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
L+ + S +++ + + V++ + R+ S +W + +L + P +++A ++
Sbjct: 507 NFLQHKE-MISTQEIDNIIAQVDIPIKSNRQTERFSNSHWKLVYLMQNPN-LEFQATVIE 564
Query: 537 FIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
++ + + ++ + VS + D+++++
Sbjct: 565 KLEKGRLMVSIADLAMTKKLSVSGKYDLNDQIKLQ 599
>gi|320538025|ref|ZP_08037928.1| RNB-like protein [Treponema phagedenis F0421]
gi|320145114|gb|EFW36827.1| RNB-like protein [Treponema phagedenis F0421]
Length = 616
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 197/416 (47%), Gaps = 34/416 (8%)
Query: 161 PGVEKFDHKDISNF-----LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQD 215
P +FDH S+ L++AE N DL+ + +AID + + + DDA+S D
Sbjct: 214 PYPARFDHSLYSSKIDIPPLKRAE----NITDLSGIPAFAIDNECSTDPDDAISF----D 265
Query: 216 GRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVC 275
G ++IHVA+P IEP + SD DA RG +++ P M EK A+E +L +
Sbjct: 266 GNY-LWIHVANPADTIEPDTKSDIDARGRGATLYAPEGASRMLGEK-AIEYFALGLTPLS 323
Query: 276 NAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALR 335
A++ + ++++G I ++ + I T M TY A E +++A LK L E A
Sbjct: 324 CALSFKIGINNEGEIISVGIERTKIAVTRM-TYRQAEE-----KKDDAALKPLFEIARRN 377
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
+ R GA+ E I V D + +++ E Q +M +V EMM+L GEA A +
Sbjct: 378 TERRHAAGAVSIEMPEVYISV----DKDKTVHIR-EAQKFESMDMVREMMLLAGEAAARF 432
Query: 396 GSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPG 455
N + Y QP + LPEG + M+ + P H LG+
Sbjct: 433 AFKNAIPFQYISQPFPELP----KKLPEGLACEYKKRRAMKPRNVG-TIPSIHAALGIAL 487
Query: 456 YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRY 515
Y Q TSP+RRY DL+ H Q+ + G+ P A L + TR A S ++
Sbjct: 488 YSQVTSPLRRYGDLVCHQQLLRFIDGK-PLMPADDLVLRIGAADAATRNAILAERCSKKH 546
Query: 516 WIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
W + +L P ++ +RA++L + ++ A +++ + +A V ++ E+ VK
Sbjct: 547 WTLVYLLDNP-DKIFRAIVLETVGNK-AHIIIPALAYEADITVKEPLELNAEISVK 600
>gi|443630765|ref|ZP_21114946.1| ribonuclease R [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443348570|gb|ELS62626.1| ribonuclease R [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 779
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 159/342 (46%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHQIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAEILRDKRMNRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|429764944|ref|ZP_19297251.1| ribonuclease R [Clostridium celatum DSM 1785]
gi|429187214|gb|EKY28131.1| ribonuclease R [Clostridium celatum DSM 1785]
Length = 751
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 170/357 (47%), Gaps = 49/357 (13%)
Query: 187 DLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGT 246
D+ +L++ ID ++A +LDDA+S +L +GR K+ +H+AD T Y++ + DK+A+KRGT
Sbjct: 247 DIRNLRMVTIDGEDAKDLDDAVSIEKLDNGRYKLGVHIADVTHYVKEKNPLDKEALKRGT 306
Query: 247 SVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYML 306
SV+L PM P KL+ SL A++ + + ++G + ++ + ++I+ + +
Sbjct: 307 SVYLIDRVIPMLPRKLSNGICSLNPKVDRLALSCFMTIDNNGKVCDHEIAETVIRTSERM 366
Query: 307 TYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
TY T++L N EE + K + E + R+++GAID E++I + N
Sbjct: 367 TYTDVTKILRDNDEELIKKYDYLVDDFKTMQELCLILRNKRMRRGAIDFDFEESKI-ILN 425
Query: 359 PEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN----- 412
E+ +PI I Y + + A R++ E M++C E IA + + NL YR +
Sbjct: 426 -ENGKPIDIKPY---EREIANRIIEEFMLVCNETIAEHMFWTNLPFVYRVHENPDEEKLQ 481
Query: 413 ------------IDVSAFAH-------------LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+ V+ H E V S+ +++ M A P
Sbjct: 482 KFRDFIYNLGYTMKVTQDIHPRILQEVLEKVKGKKEETVVSTLLLRSMMKAKY---TPEC 538
Query: 448 HGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQT 502
GL Y FTSPIRRY DL H +K L G+ A +L + I Q+
Sbjct: 539 SSHFGLAATYYCHFTSPIRRYPDLQIHRIIKEFLNGKIDEKRAAKLAPIVDIAAKQS 595
>gi|386759980|ref|YP_006233197.1| ribonuclease R [Bacillus sp. JS]
gi|384933263|gb|AFI29941.1| ribonuclease R [Bacillus sp. JS]
Length = 779
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 159/342 (46%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|336418141|ref|ZP_08598419.1| ribonuclease R [Fusobacterium sp. 11_3_2]
gi|336160012|gb|EGN63076.1| ribonuclease R [Fusobacterium sp. 11_3_2]
Length = 701
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 180/382 (47%), Gaps = 42/382 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A
Sbjct: 244 NRKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARN 303
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+L PMFP++++ SL + E + + + G + Y V S+IK
Sbjct: 304 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIKSV 363
Query: 304 YMLTYESATELLHLN---LEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ +TY++ +L + + E ++ LK + E + + + ++G+ID E ++ +
Sbjct: 364 HRMTYKAVNGILDGDKDLINEYSDIYEMLKQMLELSKILRAKKHKRGSIDFELPELKVVL 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------ 410
E E + Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 424 DKDEKVEKV---YLKDRGE-GEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKI 479
Query: 411 -----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH----- 448
NI F + E R+ ++ + K R+
Sbjct: 480 VKLNEILSKFGYKIPNFDNIHPKQFQEIIERS-RNKETSMLVHKTILTSLKQARYTVEDI 538
Query: 449 GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
G GL Y FTSPIRRY DL+ H + + + PF L+ +A ++ R+A
Sbjct: 539 GHFGLASSHYTHFTSPIRRYADLMVHRVLFSTINNSIKPFKEADLDEIAQHISKTERVAM 598
Query: 507 RLSNTSLRYWIIEFLRRQPKER 528
+ + S+R ++E+++++ E+
Sbjct: 599 KAEDESVRIKLVEYMQKRVGEK 620
>gi|46198862|ref|YP_004529.1| exoribonuclease II [Thermus thermophilus HB27]
gi|46196485|gb|AAS80902.1| exoribonuclease II [Thermus thermophilus HB27]
Length = 744
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 162/342 (47%), Gaps = 45/342 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E L R+D L+V+ ID +A + DDA+ RL G ++ +H+AD + Y++ G
Sbjct: 216 LEIPEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPRG-YRIGVHIADVSHYVKEG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
SL D++A RGTSV+LP PM PE+L+ SLR GE ++V V L D +
Sbjct: 275 SLLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLEVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELLHLNLEEEA----ELKILSEAAALRLQWRLQQGAIDT 347
+I+ LTY E+ E L EE A +L++L + + RL++GA+D
Sbjct: 335 FREGVIRSVARLTYTEVEAFAEGFGLP-EEHAFLAEDLRLLLDLTQRMREKRLKEGALDF 393
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYR 406
E +++V + L++ QA+P R L+ E+M+L +A Y L +R
Sbjct: 394 GFPEVKVEVGEEGE------LHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLFR 447
Query: 407 GQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ D A A L PE PV + +++ +R A
Sbjct: 448 VHEEPVQDAYEKLRQALARLGYTLPPKLSGHALQKALLASRGRPEEPVVAYLVLRSLRLA 507
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ H L + Y+ FTSPIRRY DL+ H +KA LR
Sbjct: 508 RYAPEN-LGHFGLAMEHYLHFTSPIRRYPDLVVHRVLKAALR 548
>gi|423214392|ref|ZP_17200920.1| ribonuclease R [Bacteroides xylanisolvens CL03T12C04]
gi|392692807|gb|EIY86043.1| ribonuclease R [Bacteroides xylanisolvens CL03T12C04]
Length = 718
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 171/382 (44%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEIKDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L +A + + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEFVGKVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|449131121|ref|ZP_21767338.1| hypothetical protein HMPREF9724_02003 [Treponema denticola SP37]
gi|448940467|gb|EMB21373.1| hypothetical protein HMPREF9724_02003 [Treponema denticola SP37]
Length = 623
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 183/392 (46%), Gaps = 28/392 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E LN A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-KLN----ANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FIGPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+ + G
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQLLKFIDGNEV 523
Query: 485 PFSAGQLEGMAS--IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+ L +A+ I A R S ++W + +L + P + Q A+IL IK+ T
Sbjct: 524 MKTDDLLMRIAAGDIAGKNCSYAER---ASRQHWTLIYLLQNP-DWQGEAVILETIKN-T 578
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
A + + +G + + I + + VK E+
Sbjct: 579 ARISIPSIGYETEMRLKKELSINERINVKAED 610
>gi|350267578|ref|YP_004878885.1| ribonuclease R [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349600465|gb|AEP88253.1| ribonuclease R [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 779
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 159/342 (46%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLIPMFKDMERLAQILRDKRMNRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGDIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|16080414|ref|NP_391241.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
gi|221311311|ref|ZP_03593158.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
gi|221315638|ref|ZP_03597443.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221320554|ref|ZP_03601848.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. JH642]
gi|221324838|ref|ZP_03606132.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. SMY]
gi|321312911|ref|YP_004205198.1| ribonuclease R [Bacillus subtilis BSn5]
gi|402777525|ref|YP_006631469.1| ribonuclease R [Bacillus subtilis QB928]
gi|418031422|ref|ZP_12669907.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. SC-8]
gi|428280936|ref|YP_005562671.1| ribonuclease R [Bacillus subtilis subsp. natto BEST195]
gi|430758072|ref|YP_007208135.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. BSP1]
gi|449095810|ref|YP_007428301.1| ribonuclease R [Bacillus subtilis XF-1]
gi|452913805|ref|ZP_21962433.1| ribonuclease R [Bacillus subtilis MB73/2]
gi|7674332|sp|O32231.1|RNR_BACSU RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|2635874|emb|CAB15366.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
gi|291485893|dbj|BAI86968.1| ribonuclease R [Bacillus subtilis subsp. natto BEST195]
gi|320019185|gb|ADV94171.1| ribonuclease R [Bacillus subtilis BSn5]
gi|351472481|gb|EHA32594.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. SC-8]
gi|402482704|gb|AFQ59213.1| Ribonuclease R [Bacillus subtilis QB928]
gi|407962199|dbj|BAM55439.1| ribonuclease R [Bacillus subtilis BEST7613]
gi|407966213|dbj|BAM59452.1| ribonuclease R [Bacillus subtilis BEST7003]
gi|430022592|gb|AGA23198.1| Ribonuclease R [Bacillus subtilis subsp. subtilis str. BSP1]
gi|449029725|gb|AGE64964.1| ribonuclease R [Bacillus subtilis XF-1]
gi|452118833|gb|EME09227.1| ribonuclease R [Bacillus subtilis MB73/2]
Length = 779
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 159/342 (46%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|225619602|ref|YP_002720859.1| VacB, Exoribonuclease R [Brachyspira hyodysenteriae WA1]
gi|225214421|gb|ACN83155.1| VacB, Exoribonuclease R [Brachyspira hyodysenteriae WA1]
Length = 661
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 164/335 (48%), Gaps = 46/335 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL ++ ID ++ + DDA+S +L D K+ IH+AD + ++ GS D++A
Sbjct: 152 FDRIDLRDIRTVTIDGADSKDFDDAISIEKLNDC-YKLGIHIADVSHFVVMGSALDREAR 210
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV V + + G++ E + S+IK
Sbjct: 211 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNKGNVKESTFHKSVIKS 270
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ +++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 271 SRRLTYDYAQDVLDGIEQDEDWLVELLKNADDVKKILLQKRIDNGSIEFNLNETQIILDK 330
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E+M++ +A
Sbjct: 331 GGNPKD------FFIGERKE-THKIIEELMLIANCEVAKRLKNIKGSIYRVHDSPDQEKL 383
Query: 396 GSFNNLALPYRG-----QPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPV 446
+F +A RG N+D +F P+ + + +++ M+ A D +
Sbjct: 384 DTFTRIAFN-RGYRLTRDADGNLDFHSFIESIMGKPDEKLLLTLLLRSMKQAIYDVNN-I 441
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H LG Y FTSPIRRY DLL H +K L G
Sbjct: 442 GHFGLGFEYYTHFTSPIRRYTDLLTHRLLKQSLEG 476
>gi|331268763|ref|YP_004395255.1| ribonuclease R [Clostridium botulinum BKT015925]
gi|329125313|gb|AEB75258.1| ribonuclease R [Clostridium botulinum BKT015925]
Length = 746
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 172/368 (46%), Gaps = 41/368 (11%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R+DLT + + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D++A+K
Sbjct: 245 SREDLTDVTMVTIDGEDAKDLDDAVSIKKLDNGNYLLGVHIADVSHYVKEKNPLDREALK 304
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L PM P++L+ SL A+T + ++ G + +Y + SIIK
Sbjct: 305 RATSVYLINKVIPMLPKELSNGICSLNPKVNRLAMTCFMEINDKGKVVDYRITKSIIKTN 364
Query: 304 YMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+TY T++L EE E K++ + + + R+ +GAID E++I
Sbjct: 365 ERMTYTDVTKILRDKDEETIEKYKDLYEDFKLMEKLCEILYKKRISRGAIDFEFEESKII 424
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
+ + P I++ ++A A R++ E M++C E +A + + L YR + +
Sbjct: 425 LDDNGKP---IDVKPYERA-IANRIIEEFMLVCNETVAEHMYWTKLPFVYRIHEDPDEEK 480
Query: 415 ---VSAFAH------LPEGPVRSSAIVKIMRAAAIDFRKPVRH----------------- 448
FA+ P V A+ +I+ + + V +
Sbjct: 481 LQRFREFAYNLGYFIKPSKEVHPKALQEIIESVKGKKEETVVNTLLLRSLKQARYAPQCV 540
Query: 449 GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
G GL Y FTSPIRRY DL+ H +K L G QLE +MQ+
Sbjct: 541 GHFGLAAKFYCHFTSPIRRYPDLIIHRIIKESLDGTIDENRFRQLESAVDYASMQSSDME 600
Query: 507 RLSNTSLR 514
RL+ + R
Sbjct: 601 RLAMEAER 608
>gi|422341861|ref|ZP_16422801.1| RNB-like family protein [Treponema denticola F0402]
gi|325473929|gb|EGC77117.1| RNB-like family protein [Treponema denticola F0402]
Length = 623
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 183/392 (46%), Gaps = 28/392 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+ + G
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQLLKFIDGNEV 523
Query: 485 PFSAGQLEGMAS--IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+ L +A+ I A R S ++W + +L + P + Q A+IL IK+ T
Sbjct: 524 MKTDDLLMRIAAGDIAGKNCSYAER---ASRQHWTLIYLLQNP-DWQGEAVILETIKN-T 578
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
A + + +G + + I + + +K E+
Sbjct: 579 ARISIPSIGYETEMRLKKELSINERINIKAED 610
>gi|288941016|ref|YP_003443256.1| ribonuclease II [Allochromatium vinosum DSM 180]
gi|288896388|gb|ADC62224.1| ribonuclease II [Allochromatium vinosum DSM 180]
Length = 608
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 194/401 (48%), Gaps = 47/401 (11%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL YAID + + DDALS DG ++++HVAD + P S +++A
Sbjct: 231 TRLDLTHLPAYAIDDEGNQDPDDALSL----DGD-RLWVHVADVGALVRPDSELEREARA 285
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++++LP M P ++ E + L EV A++ ++ +DG + + V + ++ T
Sbjct: 286 RGSNLYLPEGVVNMLPWRVT-EHLGLGLQEVSPALSFALRCDADGELRDIEVHRTWVRVT 344
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-DP 362
L+YE+ + L+ E A L+ ++ R R QGA A E ++V + +
Sbjct: 345 R-LSYEAVEQ--RLSEEPFAALRAFTDRFRAR---RFAQGASRLALPEVSVRVEDGRVNI 398
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
P+ L + LV++ M++ GEA A + + +P+ QP P
Sbjct: 399 RPLPRLMSRE-------LVTDAMLMAGEAAARFCLEREIPIPFAVQPP-----------P 440
Query: 423 EGPVRSSAIVKIMRAAAIDFR------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
E S+ + M A F+ +P RH LGL Y + TSP+RRY DLL H Q++
Sbjct: 441 ESTDESTDLAS-MYARRRGFKPTRLVLEPDRHASLGLGHYTRATSPLRRYSDLLVHQQIR 499
Query: 477 ACLRGESPPFSAGQ-LE--GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRAL 533
A L G +PP Q LE G A ++ R RLSN ++W + +L+ P + +
Sbjct: 500 AWLDG-APPLDRAQVLERIGEAEQSSIAVRRGERLSN---QHWKLVYLKENPGWKGQGVV 555
Query: 534 ILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
+ +++R A +L+ ++ L+A V + + + V E
Sbjct: 556 V--ALEERRAVILVPDLALEARIRVRDAVTLNQPLRIAVNE 594
>gi|89255575|ref|YP_512936.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica LVS]
gi|115314081|ref|YP_762804.1| ribonuclease II [Francisella tularensis subsp. holarctica OSU18]
gi|156501518|ref|YP_001427583.1| ribonuclease II (RNB-like) family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|254366977|ref|ZP_04983013.1| ribonuclease II [Francisella tularensis subsp. holarctica 257]
gi|290954408|ref|ZP_06559029.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica URFT1]
gi|422938083|ref|YP_007011230.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica FSC200]
gi|423049879|ref|YP_007008313.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica F92]
gi|89143406|emb|CAJ78579.1| Ribonuclease II family protein [Francisella tularensis subsp.
holarctica LVS]
gi|115128980|gb|ABI82167.1| ribonuclease II [Francisella tularensis subsp. holarctica OSU18]
gi|134252803|gb|EBA51897.1| ribonuclease II [Francisella tularensis subsp. holarctica 257]
gi|156252121|gb|ABU60627.1| ribonuclease II (RNB-like) family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|407293234|gb|AFT92140.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica FSC200]
gi|421950601|gb|AFX69850.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica F92]
Length = 616
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 192/390 (49%), Gaps = 25/390 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H++DP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHISDPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ++ L+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQLRNFLQH 511
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
+ SA +++ + + V++ + R+ S +W + +L + P + +++A ++ ++
Sbjct: 512 KE-MISAQEIDNIIAQVDIPIKSNRQTERFSNSHWKLVYLIQNP-DLEFQATVIEKLEKS 569
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + + + VS + D+++++
Sbjct: 570 RLMVSIAALAMTKKLSVSGKYDLNDQIKLQ 599
>gi|326389835|ref|ZP_08211399.1| ribonuclease R [Thermoanaerobacter ethanolicus JW 200]
gi|325994103|gb|EGD52531.1| ribonuclease R [Thermoanaerobacter ethanolicus JW 200]
Length = 720
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 159/337 (47%), Gaps = 43/337 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT+L ID ++A +LDDA+ +L + +Y+ +AD + Y++ GS DK+A+KR
Sbjct: 244 RIDLTNLNFVTIDGEDAKDLDDAVCVQKLSEENYLLYVSIADVSHYVKEGSHLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I+ + + + A R++ E M+ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPIDIVKV----ERNIAHRIIEEFMLAANETVAEHMHWLNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGK 576
>gi|291515528|emb|CBK64738.1| RNAse R [Alistipes shahii WAL 8301]
Length = 744
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 173/386 (44%), Gaps = 46/386 (11%)
Query: 182 LLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+ R+D + + +D +A + DDALS +++DG +V +H+AD T Y+ P S+ D +A
Sbjct: 257 IAQRRDFRGVTTFTVDPADAKDFDDALSVRKIKDGVWEVGVHIADVTHYVRPHSVIDDEA 316
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
++RGTSV+L T PM PE+L+ E SLR E + L+ + I E ++I
Sbjct: 317 VERGTSVYLVDRTVPMLPERLSNELCSLRPHETSLCFSAVFTLNENLDILEEWFGRTVIH 376
Query: 302 PTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
TY A E++ + AE L + A ALR + R + GAI E + ++
Sbjct: 377 SDRRFTYAEAQEIIETGRGDYAEEVLTLNRLAQALRKE-RFRNGAISFDREEVKFRLDEN 435
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMIL--------CGEAIATYGSFNNLALPYRGQ--- 408
P + +Y ++Q + + +++ E M+L CG+ G + YR
Sbjct: 436 GKP---LGVYFKEQKE-SNQMIEEFMLLANRRVAEFCGKRRTESGRSAERTMVYRVHDTP 491
Query: 409 PQSNID-----VSAFAHL---PEGPVRSSAIVKIMR-------------------AAAID 441
+ +D + F H+ +G + + K+ + A A
Sbjct: 492 SEEKLDRFRQFILRFGHIFKATKGRAVAKELNKLFKQIKGTTEENAVATMAVRSMAKAYY 551
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQ 501
+ H L P Y FTSPIRRY D++ H + L G P +LE + + + +
Sbjct: 552 TTDNIGHYGLAFPYYTHFTSPIRRYPDMMVHRLLARYLAG-GKPADKTELEDLCARASDR 610
Query: 502 TRIARRLSNTSLRYWIIEFLRRQPKE 527
+A S++Y ++EF++ E
Sbjct: 611 EVVAAEAERASIKYKMVEFMKEHIGE 636
>gi|345017427|ref|YP_004819780.1| ribonuclease R [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032770|gb|AEM78496.1| ribonuclease R [Thermoanaerobacter wiegelii Rt8.B1]
Length = 727
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 159/337 (47%), Gaps = 43/337 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT+L ID ++A +LDDA+ +L + +Y+ +AD + Y++ GS DK+A+KR
Sbjct: 244 RIDLTNLNFVTIDGEDAKDLDDAVCVQKLSEENYLLYVSIADVSHYVKEGSHLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I+ + + + A R++ E M+ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPLDIVKV----ERNIAHRIIEEFMLAANETVAEHMHWLNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IVFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGK 576
>gi|392941226|ref|ZP_10306870.1| LOW QUALITY PROTEIN: ribonuclease R [Thermoanaerobacter
siderophilus SR4]
gi|392292976|gb|EIW01420.1| LOW QUALITY PROTEIN: ribonuclease R [Thermoanaerobacter
siderophilus SR4]
Length = 720
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 159/337 (47%), Gaps = 43/337 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT+L ID ++A +LDDA+ +L + +Y+ +AD + Y++ GS DK+A+KR
Sbjct: 244 RIDLTNLNFVTIDGEDAKDLDDAVCVQKLSEENYLLYVSIADVSHYVKEGSHLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I+ + + + A R++ E M+ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPIDIVKV----ERNIAHRIIEEFMLAANETVAEHMHWLNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGK 576
>gi|440781366|ref|ZP_20959708.1| ribonuclease R [Clostridium pasteurianum DSM 525]
gi|440220971|gb|ELP60177.1| ribonuclease R [Clostridium pasteurianum DSM 525]
Length = 756
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 176/374 (47%), Gaps = 42/374 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ NR+DL +K+ ID ++A +LDDA+S +L++G + +H+AD + Y+ + D
Sbjct: 238 EEEYKNRRDLRDIKMVTIDGEDAKDLDDAVSIEKLENGNYYLGVHIADVSNYVREKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+ RGTSV+L PM P KL+ SL A++ + ++ +G + + V S
Sbjct: 298 KEALLRGTSVYLIDRVIPMLPRKLSNGICSLNPKVDRLALSCFMEINEEGKVVNHDVFES 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
IIK +TY T+++ +E E + E + + R+ +G+ID
Sbjct: 358 IIKTNERMTYTDVTKIMRDKDKETIEKYKYLYEDFMAMEELCNILYKRRINRGSIDFDFQ 417
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E++I + P I++ ++A A R++ E M++C E IA + + NL YR
Sbjct: 418 ESKIILNEQGKP---IDIKPYERA-IANRVIEEFMLVCNETIAEHMFWTNLPFVYRIHED 473
Query: 411 SNID----VSAFAH-------LPEGPVRSSAIVKIMRA----------AAIDFR--KPVR 447
+ + + FAH V + KI+ A + + R K R
Sbjct: 474 PDTEKLEHFNEFAHNLGYVVRWGTNKVHPKELQKIIEAVKGKKEETVVSTLLLRSLKQAR 533
Query: 448 H-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+ G GL Y FTSPIRRY DL+ H +K L G+ + +L G+ ++
Sbjct: 534 YSPECVGHFGLAAKYYCHFTSPIRRYPDLMIHRIIKEFLHGKIDKERSKKLIGIVDYASV 593
Query: 501 QTRIARRLSNTSLR 514
Q+ R++ + R
Sbjct: 594 QSSDMERVAQEAER 607
>gi|423136581|ref|ZP_17124224.1| ribonuclease R [Fusobacterium nucleatum subsp. animalis F0419]
gi|371961735|gb|EHO79359.1| ribonuclease R [Fusobacterium nucleatum subsp. animalis F0419]
Length = 701
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 179/382 (46%), Gaps = 42/382 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A
Sbjct: 244 NRKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARN 303
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+L PMFP++++ SL + E + + + G + Y V S+IK
Sbjct: 304 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIKSV 363
Query: 304 YMLTYESATELLHLN---LEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ +TY++ +L + + E ++ LK + E + + + ++G+ID E ++ +
Sbjct: 364 HRMTYKAVNGILDGDKDLINEYSDIYEMLKQMLELSKILRAKKHKRGSIDFELPELKVVL 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------ 410
E E + Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 424 DKDEKVEKV---YLKDRGE-GEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKI 479
Query: 411 -----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH----- 448
NI F + E R ++ + K R+
Sbjct: 480 VKLNEILAKFGYKIPNFDNIHPKQFQEIIERS-RDKETSMLVHKTILTSLKQARYTVEDI 538
Query: 449 GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
G GL Y FTSPIRRY DL+ H + + + PF L+ +A ++ R+A
Sbjct: 539 GHFGLASSHYTHFTSPIRRYADLMVHRVLFSTINNSIKPFKEADLDEIAQHISKTERVAM 598
Query: 507 RLSNTSLRYWIIEFLRRQPKER 528
+ + S+R ++E+++++ E+
Sbjct: 599 KAEDESVRIKLVEYMQKRVGEK 620
>gi|254368573|ref|ZP_04984589.1| hypothetical protein FTAG_01559 [Francisella tularensis subsp.
holarctica FSC022]
gi|157121476|gb|EDO65667.1| hypothetical protein FTAG_01559 [Francisella tularensis subsp.
holarctica FSC022]
Length = 618
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 192/390 (49%), Gaps = 25/390 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H++DP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHISDPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ++ L+
Sbjct: 454 DSIADMFAKRKKLQRGRYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQLRNFLQH 511
Query: 482 ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDR 541
+ SA +++ + + V++ + R+ S +W + +L + P + +++A ++ ++
Sbjct: 512 KE-MISAQEIDNIIAQVDIPIKSNRQTERFSNSHWKLVYLIQNP-DLEFQATVIEKLEKS 569
Query: 542 TAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + + + VS + D+++++
Sbjct: 570 RLMVSIAALAMTKKLSVSGKYDLNDQIKLQ 599
>gi|222530075|ref|YP_002573957.1| ribonuclease R [Caldicellulosiruptor bescii DSM 6725]
gi|222456922|gb|ACM61184.1| ribonuclease R [Caldicellulosiruptor bescii DSM 6725]
Length = 716
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 174/359 (48%), Gaps = 54/359 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++L R DL +L ++ ID ++A + DDA+S +L +G + +H+AD + Y++P +
Sbjct: 245 TEEDLEGRVDLRNLTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTHL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A +RGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 DKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVMMEIDKQGNVVKHDI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWRLQQGA 344
S+I+ +TY + T++L EE+ E L+++ E A + + R+++GA
Sbjct: 363 FESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALILREKRMKRGA 419
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ET++ + P ++ + + +++ E M++C E +A + + N+
Sbjct: 420 LDFDFDETKVILDKNGKPIDVVRY----ELTISNKIIEEFMLICNETVANHFYWLNVPFL 475
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 476 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPEERVIHTLCLR 535
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
++ A + + H L Y FTSPIRRY DL+ H +K L+G+ A +L+
Sbjct: 536 SLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIHRIMKDVLKGKMTEKKAQKLK 593
>gi|346225792|ref|ZP_08846934.1| ribonuclease R [Anaerophaga thermohalophila DSM 12881]
gi|346226965|ref|ZP_08848107.1| ribonuclease R [Anaerophaga thermohalophila DSM 12881]
Length = 720
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/381 (27%), Positives = 167/381 (43%), Gaps = 48/381 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L++G +V IH+AD T Y+ P ++ DK+A R
Sbjct: 259 RRDFRKVTTFTIDPADAKDFDDALSLRKLKNGNWEVGIHIADVTHYVHPNTVIDKEAADR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM PE+L+ E SLR E + L +D + + V +II+
Sbjct: 319 ATSVYLVDRVVPMLPERLSNELCSLRPDEDKLCFSAVFELDNDARVLDSWVGRTIIRSDR 378
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A ++ + +ELK+L++ A + R +G+ID +E + ++ E+
Sbjct: 379 RFTYEEAQTVIETGEGDLNSELKVLNDLAQKLRKERFSKGSIDFERVEVKFEL--DENGN 436
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL------------ALPYRGQPQS 411
P+ + E A A +L+ E M+L +A N L YR +
Sbjct: 437 PLSVFFKE--AKEANKLIEEFMLLANRRVAEIIGQNELDGKNSAPGKNAKTFVYRIHDEP 494
Query: 412 N----------IDVSAFAHLPEG----------------PVRSSAIVKIM----RAAAID 441
N + F +P+G + IV+ + + A+
Sbjct: 495 NPEKYETFSKFVRKLGFEAMPKGHETIGHSLNRLLDEVQGKKHQNIVETLAIRTMSKAVY 554
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQ 501
+ H LG Y FTSPIRRY D++ H ++ L G S E M+
Sbjct: 555 STHNIGHYGLGFKYYTHFTSPIRRYPDMMVHRLLQRYLDGGRSVSSEKYEELCDHSTKME 614
Query: 502 TRIARRLSNTSLRYWIIEFLR 522
R A S++Y +EFL+
Sbjct: 615 IRAA-DAERASVKYKQVEFLK 634
>gi|345303465|ref|YP_004825367.1| ribonuclease R [Rhodothermus marinus SG0.5JP17-172]
gi|345112698|gb|AEN73530.1| ribonuclease R [Rhodothermus marinus SG0.5JP17-172]
Length = 751
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 172/380 (45%), Gaps = 43/380 (11%)
Query: 192 KVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLP 251
+V+ ID +A + DDAL RL +G I+V +H+AD + Y+ PGS D++A +RGTSV+L
Sbjct: 276 EVFTIDPSDAKDFDDALHLRRLPNGHIEVGVHIADVSYYVRPGSALDEEAYQRGTSVYLV 335
Query: 252 TATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESA 311
PM PEKL+ + SLR GE +V + L + Y + ++I TYE A
Sbjct: 336 DRVIPMLPEKLSNQVCSLRPGEDKLTYSVLMELTPSARVVRYQIRETVIHSRQRFTYEEA 395
Query: 312 TELLHLNLEEEAELKILSEAAALRL-QWRLQQGAIDTATLETRIKVANPEDPEPIINLYV 370
++ AE L+ A +L + R++ GAID E ++++ +P I +Y
Sbjct: 396 QAIIDGTDHPLAEPVRLAHELAQKLRRARMEAGAIDFDLPEVKVELDEAGNP---IRIYR 452
Query: 371 EDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL--------- 421
+++ A +L+ E M+L +A A P+ + D L
Sbjct: 453 KERL-AAHQLIEEFMLLANRLVAETIGKRAEAPPFVYRIHDRPDAEKIRQLAQYVRVFGY 511
Query: 422 -------------------------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGY 456
PE PV A ++ M A + + H L Y
Sbjct: 512 HLELTEDGTVSSKALNELLQHVKGTPEEPVIEEAALRAMAKARYSTQN-IGHYGLAFDFY 570
Query: 457 VQFTSPIRRYMDLLAHYQVKACLRG--ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLR 514
FTSPIRRY DL+ H +K L+ ++P A +LE + + R A S+R
Sbjct: 571 THFTSPIRRYPDLMVHRLLKQYLKKAEKAPTVDADELEARCRHCSERERAAEEAERDSVR 630
Query: 515 YWIIEFLRRQPKERQYRALI 534
+ ++++++ ER +R ++
Sbjct: 631 FKQVQYMQQHVGER-FRGVV 649
>gi|110636884|ref|YP_677091.1| exoribonuclease II [Cytophaga hutchinsonii ATCC 33406]
gi|110279565|gb|ABG57751.1| RNAse R [Cytophaga hutchinsonii ATCC 33406]
Length = 750
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 175/387 (45%), Gaps = 48/387 (12%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+ +E + R+D+ + ID ++A + DDA+S L +G ++ +H+AD + Y++PG
Sbjct: 262 ETSEAEIKKRRDMRGTTTFTIDPEDAKDFDDAISFKYLDNGNWEIGVHIADVSHYVQPGD 321
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEY 293
DK+A +R TSV+L PM PE+L+ E SLR E + +T S + + +D + +
Sbjct: 322 TLDKEAYRRATSVYLVDRCVPMLPERLSNELCSLRPNE--DKLTFSAIFEIDADAKVLDE 379
Query: 294 SVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLET 352
+II T +YE A E++ + EL IL+ A R ++GAI T+E
Sbjct: 380 WFGRTIIHSTRRFSYEQAQEVIETQQGDLVKELTILNTLAKKMRAQRFKEGAISFETVEV 439
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYR 406
+ ++ P ++ +D A +L+ E M+L + +A + G + + YR
Sbjct: 440 KFQLDAKGKPLAVVPKVRKD----AHKLIEEFMLLANKRVAEFVFNLRKGKGTSNTMVYR 495
Query: 407 GQPQSNIDVSA--------FAH-----------------------LPEGPVRSSAIVKIM 435
N + A F H PE V S ++ M
Sbjct: 496 THDAPNPEKLASLATFAKRFGHKVELDDENAIAKNLNKLSDEVEGKPEQNVLQSLAIRTM 555
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ AI +P H L Y FTSPIRRY D++AH ++ L G +E
Sbjct: 556 -SKAIYSIEPDMHFGLAFKHYSHFTSPIRRYPDVMAHRLLQHYLDGGKSADKEYYIEACE 614
Query: 496 SIVNMQTRIARRLSNTSLRYWIIEFLR 522
+ Q ++A +S+++ +EF++
Sbjct: 615 H-SSAQEKLAAEAERSSIKFKQVEFMQ 640
>gi|212550560|ref|YP_002308877.1| ribonuclease R [Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
gi|212548798|dbj|BAG83466.1| putative ribonuclease R [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 586
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 173/383 (45%), Gaps = 52/383 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + ID A + DDALS +L + ++ +H+AD T YI+P S DK+A+K
Sbjct: 122 NREDFRETLTFTIDPQNAKDFDDALSIKKLSNNFYEIGVHIADVTHYIKPDSSIDKEALK 181
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG--SIAEYSVDNSIIK 301
RGTS++L PM PE L E SLR E + + SV+ DG I Y + +II+
Sbjct: 182 RGTSIYLVDKVIPMLPESLCNEVCSLRPNE--DKLCFSVIFEMDGKAKIHNYRIRRTIIR 239
Query: 302 PTYMLTYESATELLH----LNLEE---EAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+ TYE A E++ N E+ + + L+ A + + R G+ID E +
Sbjct: 240 SDHRFTYEEAQEIIERSFATNYEDCSLNSSVFTLNCLAKILREKRFSNGSIDFVQREIQF 299
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLALPY----RG 407
+ +P +++Y++ + + A +LV E M+L + IA G N A P+ G
Sbjct: 300 DLDREGNP---LDIYLK-KNNEANQLVEEFMLLANKTIAEIVGKVPKNKRAKPFVYRVHG 355
Query: 408 QP--------------------------QSNIDVSAFAHLPEGPVRSSAIVKI-MRA--A 438
P +++ ++S+ +G + I I +R
Sbjct: 356 LPDIEKIKNLKQLVRSFGYKLNIKRINNETSKNISSLFKQVQGTREQNLIETIALRTMEK 415
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
AI + V H L Y FTSPIRRY D++ H ++ L S LE +
Sbjct: 416 AIYTTENVGHYGLAFKYYTHFTSPIRRYPDMIVHRLLEKYL-NRKYSVSKKSLERLCKHC 474
Query: 499 NMQTRIARRLSNTSLRYWIIEFL 521
+ Q IA + S++ +EF+
Sbjct: 475 SEQESIAIQAERASIKAKQVEFM 497
>gi|374373387|ref|ZP_09631047.1| ribonuclease R [Niabella soli DSM 19437]
gi|373234360|gb|EHP54153.1| ribonuclease R [Niabella soli DSM 19437]
Length = 664
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 180/386 (46%), Gaps = 50/386 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+D+L RKD+ + + ID ++A + DDA+S L++G +V +H+AD + Y+ PG+
Sbjct: 187 TKDDLAKRKDVRGILTFTIDPEDAKDFDDAISFRVLKNGNYEVGVHIADVSHYVTPGTAL 246
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSV 295
D +A +R TSV+LP PM PE ++ SLR E + +T S + L+ + +Y +
Sbjct: 247 DDEAYQRATSVYLPDRVNPMLPEHISNVLCSLRPNE--DKLTFSAIFQLNDKAEVKQYWL 304
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL-QWRLQQGAIDTATLETRI 354
++I TYE A +++ + A + + RL Q R +GAI+ + E R
Sbjct: 305 GKTVIHSNRRYTYEDAQQIIETGAGDNAAALLTVHKLSQRLRQNRFDEGAINFNSTEVRF 364
Query: 355 KVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGS---FNN--LALPYRGQ 408
K+ E+ P+ I L V +A+ +L+ E+M+L + +A S NN L PYR
Sbjct: 365 KL--DENGVPVGITLKVSKEAN---QLIEELMLLANKYVAESASKVKINNKTLPFPYRIH 419
Query: 409 PQSN-----------------IDVS-------AFAHL-------PEGPVRSSAIVKIMRA 437
+ D+S +F L PE V ++ M A
Sbjct: 420 DTPDEEKLLPFVAFTNKFGYKFDISSAESIAASFDKLLKDIKGRPEEAVLQQLGIRTM-A 478
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASI 497
A + H LG Y FTSPIRRY D++ H ++ L E + +LE
Sbjct: 479 KAKYTSSNIGHYGLGFENYCHFTSPIRRYPDIMVHRILEEIL--EDRARADKKLEEKCKH 536
Query: 498 VNMQTRIARRLSNTSLRYWIIEFLRR 523
+ + R A ++ +Y +E++++
Sbjct: 537 CSERERAAMEAERSANKYKQVEYMQQ 562
>gi|325954642|ref|YP_004238302.1| ribonuclease R [Weeksella virosa DSM 16922]
gi|323437260|gb|ADX67724.1| ribonuclease R [Weeksella virosa DSM 16922]
Length = 731
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 156/344 (45%), Gaps = 42/344 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + R+D+ + + ID +A + DDALS L++G ++ +H+AD T Y++PG+L D
Sbjct: 271 ENEVKKRRDMRDILTFTIDPKDAKDFDDALSIQPLENGNWEIGVHIADVTHYVQPGTLID 330
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A KR TSV+L PM PE L+ SLR E + L ++G + + +
Sbjct: 331 QEAYKRATSVYLVDRVVPMLPEILSNNVCSLRPNEDKYTFSGVFELTNEGDVVKSWFGRT 390
Query: 299 IIKPTYMLTYESATELLHLNLEE-EAELKILSE-AAALRLQWRLQQGAIDTATLETRIKV 356
I + +YE A EL+ + + E++ L A LR Q R+++GAI+ +E + ++
Sbjct: 391 AIHSNHRFSYEEAQELIEGKTGDYQEEIRTLDRLAKKLRAQ-RMKEGAINFDKIEVKFQL 449
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYRGQPQS 411
+P + +D + L+ E M+LC ++ + G N YR +
Sbjct: 450 DQDNNPTGVFFKISKD----SNHLIEEFMLLCNRKVSEFVSLEKGKENGRTYIYRIHDEP 505
Query: 412 NID--------VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKP------------------ 445
+ D V F + E R I + R A KP
Sbjct: 506 DPDKLLDLKKFVIQFGYELEIGERKKTIRSMNRLLADVKGKPEENMIETLAMRSMSKAKY 565
Query: 446 ----VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPP 485
+ H L Y FTSPIRRY D++AH ++ L +S P
Sbjct: 566 STENIGHYGLAFDYYTHFTSPIRRYPDMIAHRLLQDFLDKKSSP 609
>gi|50305043|ref|XP_452479.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641612|emb|CAH01330.1| KLLA0C06314p [Kluyveromyces lactis]
Length = 983
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 119/426 (27%), Positives = 185/426 (43%), Gaps = 46/426 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI----EPGSLSDKD 240
R + L Y ID +A E+DDA+S L + ++YIHVADP E G+ +
Sbjct: 533 RTEYKDLICYCIDSPDAHEIDDAVSIKSLGGAKYRIYIHVADPASLFPEANEDGTTINSP 592
Query: 241 ----AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA----- 291
A +R + +LP +PM P A + G+ AVT SV S
Sbjct: 593 VLDIAYQRAFTTYLPDKVFPMLPTTYARSSDLGQFGKPTKAVTFSVDCTFSKSKGLCLLK 652
Query: 292 -EYSVDNSIIKPTYMLTYESATELLHLNLEE-----EAELKILSE-AAALRLQWRLQQGA 344
V+ S++ + +TYE+ ELL + +LK L A ALR Q + GA
Sbjct: 653 DSLKVELSVLHKSTRITYEAVDELLDEPTTKPKSGKHEDLKTLFYIAKALRRQRIVDGGA 712
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADP-AMRLVSEMMILCGEAIATYGSFNNLAL 403
+ T I +P+D ++ + +DQ + + LVSE+MIL A+Y N +
Sbjct: 713 VVFENSSTGIVSLSPDDNSELVEVSFKDQIETKSTILVSELMILANSLTASYFEENQIPG 772
Query: 404 PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRK-----------PVRHGVLG 452
YRG N+ V +PE + KI+ A I K P H +LG
Sbjct: 773 IYRGYRPLNV-VEDATSVPEWVKAKTQENKIISKADIAKMKSFLTSSFYSSLPTPHDMLG 831
Query: 453 LPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTS 512
Y+ TSP+RR+ DL+ H Q+ L+G + QL+GM + + + S +
Sbjct: 832 TSHYLTITSPLRRFPDLVNHLQLHRTLKGLPLLYKQSQLDGMVWHILTRDVTLKNASVDA 891
Query: 513 LRYWIIEFLRRQ---PKERQYRALILRF---------IKDRTAALLLVEVGLQAAAWVSV 560
RYW + FL+++ P + ++ I I D+ A+ +++ L + V
Sbjct: 892 QRYWTLRFLKKEIEDPTKNNWKLQITSLTDNGYAHCVILDKAFAVGQLKINLNKNPPL-V 950
Query: 561 GAQIGD 566
G QI D
Sbjct: 951 GDQISD 956
>gi|332663653|ref|YP_004446441.1| ribonuclease R [Haliscomenobacter hydrossis DSM 1100]
gi|332332467|gb|AEE49568.1| ribonuclease R [Haliscomenobacter hydrossis DSM 1100]
Length = 728
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 176/383 (45%), Gaps = 54/383 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ + ID + A + DDALS + L +G ++V +H+AD T Y+ + DK+A+ R
Sbjct: 270 RRDMRKTPTFTIDPENARDFDDALSFLYLPNGNLEVGVHIADVTHYVHENTTLDKEALAR 329
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG--SIAEYSVDNSIIKP 302
TSV+L PM PEKL+ E SLR E + +T S V D I E ++I
Sbjct: 330 STSVYLVDRVCPMLPEKLSNELCSLRPNE--DKLTFSAVFTFDAHDKIVERWFGKTVIHS 387
Query: 303 TYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+YE A +L + A ELK+L+ A + R ++GAI+ + E R ++ +
Sbjct: 388 DRRFSYEEAQAVLDSGEGDFAKELKVLNALAHKLRKERFKKGAINFESEEVRFRLDDNGV 447
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY----GSFNNLALP--YRGQPQSNID- 414
P I ++ +++ D M L+ + M+L + +AT+ G+ + +P YR + N D
Sbjct: 448 P---IEVFTKERKDAHM-LIEDFMLLANKEVATFVSNKGTQDGAEIPFVYRVHDEPNTDK 503
Query: 415 -----------------------VSAFAHLPEGPVRSSAI-----VKIMRAAAIDFRKP- 445
++F L + A+ + I A ++
Sbjct: 504 VEELARFARQMGVEMNVTTPKDIANSFNKLAALAEENEALSILGPIAIRTMAKAEYSSDN 563
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHY----QVKACLRGESPPFSAGQLEGMASIVNMQ 501
+ H L Y FTSPIRRY D+LAH +KA R + +LE M V+ Q
Sbjct: 564 IGHYGLAFDFYSHFTSPIRRYSDVLAHRILFDNLKAIHR-----VNKEKLEEMCKHVSKQ 618
Query: 502 TRIARRLSNTSLRYWIIEFLRRQ 524
R A S++Y +EF+ +
Sbjct: 619 ERRAADAERESIKYKQVEFMSKH 641
>gi|449126110|ref|ZP_21762404.1| hypothetical protein HMPREF9723_02448 [Treponema denticola OTK]
gi|448938824|gb|EMB19751.1| hypothetical protein HMPREF9723_02448 [Treponema denticola OTK]
Length = 623
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 183/392 (46%), Gaps = 28/392 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
++LTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 ENLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGISRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E LN A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-KLN----ANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
IN Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FINPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+ + G
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQLLKFIDGNEV 523
Query: 485 PFSAGQLEGMAS--IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+ L +A+ I A R S ++W + +L + P + Q A+IL IK+
Sbjct: 524 MKTDDLLMRIAAGDIAGKNCSYAER---ASRQHWTLIYLLQNP-DWQGEAVILETIKN-N 578
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
A + + +G + + I + + VK E+
Sbjct: 579 ARISIPSIGYETEMRLKKELSINERINVKAED 610
>gi|402836909|ref|ZP_10885440.1| ribonuclease R [Mogibacterium sp. CM50]
gi|402269925|gb|EJU19194.1| ribonuclease R [Mogibacterium sp. CM50]
Length = 652
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 157/335 (46%), Gaps = 52/335 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D +K ID ++ + DDA+S +L++G + +H+AD +Y+ G++ D +A+ R
Sbjct: 194 RQDYRSIKTITIDGADSSDFDDAISVSKLENGNFMLLVHIADVAEYVREGTILDMEALSR 253
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+LP PM PE+L+ SL G +T S+ + DG + Y +D SII+ Y
Sbjct: 254 GNSVYLPDRVIPMLPERLSNGECSLNPGVNRLTLTASMEIDEDGHVTSYDIDESIIRSDY 313
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRL----------QWRLQQGAIDTATLETRI 354
L Y+ +++L + A ++ S+ + L + R + G+ID E++I
Sbjct: 314 RLIYDDISDILE--YRDSALVERYSDIYPMLLDALELFKVLNKRRKRDGSIDFDLPESKI 371
Query: 355 KVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ--- 410
+ ED +P I LY + A R++ E M++ + +A + + + YR +
Sbjct: 372 IL--DEDGKPTDIKLY---ERRVANRMIEEFMLVANKTVAEHYFWAKVPFVYRVHQKPDA 426
Query: 411 -----------------------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAID 441
SN+ + A A PE P+ S +++ M+ A
Sbjct: 427 LKMQELRSFLSGLGITINGKSDSIKTKELSNV-LRAIAGKPEEPLVSRVMIRTMQKANYS 485
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+ + H L Y FTSPIRRY DLL H +K
Sbjct: 486 -TECLGHYGLAFKYYCHFTSPIRRYADLLVHRAIK 519
>gi|237744660|ref|ZP_04575141.1| exoribonuclease II [Fusobacterium sp. 7_1]
gi|229431889|gb|EEO42101.1| exoribonuclease II [Fusobacterium sp. 7_1]
Length = 701
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 180/382 (47%), Gaps = 42/382 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A
Sbjct: 244 NRKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARN 303
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+L PMFP++++ SL + E + + + G + Y V S+IK
Sbjct: 304 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIKSV 363
Query: 304 YMLTYESATELLHLN---LEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ +TY++ +L + + E ++ LK + E + + + ++G+ID E ++ +
Sbjct: 364 HRMTYKAVNGILDGDKDLINEYSDIYEMLKQMLELSKILRAKKHKRGSIDFELPELKVVL 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------ 410
E E + Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 424 DKDEKVEKV---YLKDRGE-GEKIIEDFMIAANETVAERIFWLELASIYRTHEKPDREKI 479
Query: 411 -----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH----- 448
NI F + E R+ ++ + K R+
Sbjct: 480 VKLNEILAKFGYKIPNFDNIHPKQFQEIIERS-RNKETSMLVHKTILTSLKQARYTVEDI 538
Query: 449 GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
G GL Y FTSPIRRY DL+ H + + + PF L+ +A ++ R+A
Sbjct: 539 GHFGLASSHYTHFTSPIRRYADLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAM 598
Query: 507 RLSNTSLRYWIIEFLRRQPKER 528
+ + S+R ++E+++++ E+
Sbjct: 599 KAEDESVRIKLVEYMQKRVGEK 620
>gi|187777180|ref|ZP_02993653.1| hypothetical protein CLOSPO_00726 [Clostridium sporogenes ATCC
15579]
gi|187774108|gb|EDU37910.1| ribonuclease R [Clostridium sporogenes ATCC 15579]
Length = 725
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 174/378 (46%), Gaps = 51/378 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL L + ID ++A +LDDA+S RL +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRRKDLRDLTIVTIDGEDAKDLDDAISLERLPNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHKVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKRRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I++ ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQSIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
P G GL Y FTSPIRRY DL+ H +K + G+ A +L
Sbjct: 532 RY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATRLTTEVE 588
Query: 497 IVNMQTRIARRLSNTSLR 514
+ Q+ R++ + R
Sbjct: 589 YASKQSSEMERVAQEAER 606
>gi|189502641|ref|YP_001958358.1| hypothetical protein Aasi_1319 [Candidatus Amoebophilus asiaticus
5a2]
gi|189498082|gb|ACE06629.1| hypothetical protein Aasi_1319 [Candidatus Amoebophilus asiaticus
5a2]
Length = 718
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 165/377 (43%), Gaps = 48/377 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD + ID ++A + DDALS L +G I+V +H+AD + Y++ SL D++A +R
Sbjct: 265 RKDFREVFTITIDPEDAKDFDDALSLKILPNGHIEVGVHIADVSYYVQENSLVDQEAFER 324
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L T PM PE+L+ E SL+ E A + L GS+ ++I
Sbjct: 325 GTSVYLVDRTIPMIPERLSNELCSLKPHEDRPAFSAVFELDKQGSLHHEWFGETVIHSDQ 384
Query: 305 MLTYESA----TELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
L+YE A T+ H E+ L L A LR R + GAI+ T + ++
Sbjct: 385 RLSYEEAQQAITQPTHSLHEQITTLNNL--AKKLRAD-RFKSGAINFDTPSVKFQLDKQG 441
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------------------------- 395
P I+ ED + RL+ E M+L + +A +
Sbjct: 442 RPLSILPKVSED----SHRLIEEFMLLANKRVALHVRRMKQGKQFPTFVYRTHDQPNLER 497
Query: 396 -GSF----NNLALPYRGQPQS-----NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKP 445
G F + +PQ N+ A PE + + +++M A A+ +
Sbjct: 498 LGDFALFVKQFGYSIKAEPQEIAQSINVLSEGLAGKPEAHIIQTLAIRLM-AKALYTTEA 556
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIA 505
H L Y FTSPIRRY DLL H +K L+GE F E + + R+A
Sbjct: 557 KPHFGLAFEHYTHFTSPIRRYPDLLVHRLLKKYLKGEF-YFEEAIYEKKCQHASERERVA 615
Query: 506 RRLSNTSLRYWIIEFLR 522
S++Y +E ++
Sbjct: 616 ADAERASIKYKQVELMQ 632
>gi|336400812|ref|ZP_08581585.1| ribonuclease R [Fusobacterium sp. 21_1A]
gi|336161837|gb|EGN64828.1| ribonuclease R [Fusobacterium sp. 21_1A]
Length = 701
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 179/382 (46%), Gaps = 42/382 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A
Sbjct: 244 NRKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARN 303
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+L PMFP++++ SL + E + + + G + Y V S+IK
Sbjct: 304 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIKSV 363
Query: 304 YMLTYESATELLHLN---LEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ +TY++ +L + + E ++ LK + E + + + ++G+ID E ++ +
Sbjct: 364 HRMTYKAVNGILDGDKDLINEYSDIYEMLKQMLELSKILRAKKHKRGSIDFELPELKVVL 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------ 410
E E + Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 424 DKDEKVEKV---YLKDRGE-GEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKI 479
Query: 411 -----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH----- 448
NI F + E R ++ + K R+
Sbjct: 480 VKLNEILAKFGYKIPNFDNIHPKQFQEIIERS-RDKETSMLVHKTILTSLKQARYTVEDI 538
Query: 449 GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
G GL Y FTSPIRRY DL+ H + + + PF L+ +A ++ R+A
Sbjct: 539 GHFGLASSHYTHFTSPIRRYADLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAM 598
Query: 507 RLSNTSLRYWIIEFLRRQPKER 528
+ + S+R ++E+++++ E+
Sbjct: 599 KAEDESVRIKLVEYMQKRVGEK 620
>gi|449107228|ref|ZP_21743885.1| hypothetical protein HMPREF9729_02150 [Treponema denticola ASLM]
gi|451968924|ref|ZP_21922153.1| hypothetical protein HMPREF9728_01339 [Treponema denticola US-Trep]
gi|448963029|gb|EMB43714.1| hypothetical protein HMPREF9729_02150 [Treponema denticola ASLM]
gi|451702377|gb|EMD56799.1| hypothetical protein HMPREF9728_01339 [Treponema denticola US-Trep]
Length = 623
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 182/392 (46%), Gaps = 28/392 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
IN Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FINPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+ + G
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQLLKFIDGNEV 523
Query: 485 PFSAGQLEGMAS--IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+ L +A+ I A R S ++W + +L + P + Q A+IL IK+
Sbjct: 524 MKTDDLLMRIAAGDIAGKNCSYAER---ASRQHWTLIYLLQNP-DWQGEAVILETIKN-N 578
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
A + + +G + + I + + +K E+
Sbjct: 579 ARISIPSIGYETEMRLKKELSINECINIKAED 610
>gi|387885850|ref|YP_006316149.1| ribonuclease II family protein [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386870666|gb|AFJ42673.1| ribonuclease II family protein [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 624
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 188/391 (48%), Gaps = 27/391 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL YAID + +++ DDA+S Q+ K+++H+ADP+ I G D +A R
Sbjct: 238 RVDLTHLTAYAIDDEGSNDPDDAISWDTQQN---KMWVHIADPSSSINFGDEVDLEARAR 294
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+++++P M P + A + + L EV A++V L+ I + + S IK T
Sbjct: 295 GSNLYVPEHIITMLPPQ-ATQKLGLGLQEVSPALSVGFRLNESSDIHDIEICFSNIKVT- 352
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE- 363
+YE E + EL + A RL +GA++ E +I + + + +
Sbjct: 353 RYSYEFVEENIS-----ALELGDIGAYAKYFTNKRLTKGAVELDFPEIKISLDSDNNVKL 407
Query: 364 ---PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
P +N + LV + M++ G AI + NN+ +P+ QP+ +++ +
Sbjct: 408 TDLPRLN---------SRTLVRDTMLMAGVAIGQFCKENNICVPFSTQPEHDLEQDDLEN 458
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ + K+ R +P H +GL YVQ TSP+RRY+DLL HYQ++ L
Sbjct: 459 IDSIADMFATRKKLQRGKYS--TEPDVHAGMGLDSYVQVTSPLRRYLDLLVHYQLRNFLE 516
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKD 540
+ S ++ + + V++ + R+ S +W + +L + P +++A ++ +
Sbjct: 517 NKQ-MISVEDVDNIIAQVDIPIKSNRQTERFSNSHWKLVYLMQNPN-LEFQATVIEKLDK 574
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+ + ++ + VS + D+++++
Sbjct: 575 GRLMVSIADLAMTKKLAVSGKYDLNDQIKLQ 605
>gi|299144985|ref|ZP_07038053.1| ribonuclease R [Bacteroides sp. 3_1_23]
gi|298515476|gb|EFI39357.1| ribonuclease R [Bacteroides sp. 3_1_23]
Length = 718
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 174/382 (45%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L + +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|298482589|ref|ZP_07000774.1| ribonuclease R [Bacteroides sp. D22]
gi|336405445|ref|ZP_08586124.1| ribonuclease R [Bacteroides sp. 1_1_30]
gi|295085725|emb|CBK67248.1| RNAse R [Bacteroides xylanisolvens XB1A]
gi|298271296|gb|EFI12872.1| ribonuclease R [Bacteroides sp. D22]
gi|335938026|gb|EGM99920.1| ribonuclease R [Bacteroides sp. 1_1_30]
Length = 718
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 174/382 (45%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L + +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|289764442|ref|ZP_06523820.1| exoribonuclease II [Fusobacterium sp. D11]
gi|289715997|gb|EFD80009.1| exoribonuclease II [Fusobacterium sp. D11]
Length = 701
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 179/382 (46%), Gaps = 42/382 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A
Sbjct: 244 NRKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARN 303
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+L PMFP++++ SL + E + + + G + Y V S+IK
Sbjct: 304 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIKSV 363
Query: 304 YMLTYESATELLHLN---LEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ +TY++ +L + + E ++ LK + E + + + ++G+ID E ++ +
Sbjct: 364 HRMTYKAVNGILDGDKDLINEYSDIYEMLKQMLELSKILRAKKHKRGSIDFELPELKVVL 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------ 410
E E + Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 424 DKDEKVEKV---YLKDRGE-GEKIIEDFMIAANETVAERIFWLELASIYRTHEKPDREKI 479
Query: 411 -----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH----- 448
NI F + E R ++ + K R+
Sbjct: 480 VKLNEILAKFGYKIPNFDNIHPKQFQEIIERS-RDKETSMLVHKTILTSLKQARYTVEDI 538
Query: 449 GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
G GL Y FTSPIRRY DL+ H + + + PF L+ +A ++ R+A
Sbjct: 539 GHFGLASSHYTHFTSPIRRYADLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAM 598
Query: 507 RLSNTSLRYWIIEFLRRQPKER 528
+ + S+R ++E+++++ E+
Sbjct: 599 KAEDESVRIKLVEYMQKRVGEK 620
>gi|404406212|ref|ZP_10997796.1| RNAse R [Alistipes sp. JC136]
Length = 746
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 171/387 (44%), Gaps = 48/387 (12%)
Query: 182 LLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+ R+D + + +D +A + DDALS +++DG ++ +H+AD T Y+ P S+ D +A
Sbjct: 256 IAERRDFRQVTTFTVDPADAKDFDDALSVRKIKDGVWEIGVHIADVTHYVRPHSVIDDEA 315
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
++RGTSV+L T PM PE+L+ E SLR E + L+ + I E ++I
Sbjct: 316 VERGTSVYLVDRTVPMLPERLSNELCSLRPHETSLCFSAVFTLNENLDILEEWFGRTVIH 375
Query: 302 PTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
TY A E++ + AE L + A ALR + R + GAI E + ++
Sbjct: 376 SDRRFTYAEAQEIIETGRGDYAEEVLTLNRLAQALRAE-RFKNGAISFDREEVKFRLDEN 434
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMIL--------CGEAIATYGSFNNLALPYR---GQ 408
P + +Y ++Q + + +++ E M+L CG+ G + YR
Sbjct: 435 GKP---LGVYFKEQKE-SNQMIEEFMLLANRRVAEFCGKRRTESGRTAERTMVYRVHDSP 490
Query: 409 PQSNID-----VSAFAHLPEGPVRSSAIVKIMR-----------------------AAAI 440
+ +D + F H+ + + A+ K M A A
Sbjct: 491 SEEKLDRFRQFILRFGHIFKA-TKGRAVAKEMNKLFKQIKGTTEENAVSTMAVRSMAKAY 549
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+ H L P Y FTSPIRRY D++ H + L G +LE + + +
Sbjct: 550 YTTDNIGHYGLAFPYYTHFTSPIRRYPDMMVHRLLARYLAG-GKSADKTELEDLCARASD 608
Query: 501 QTRIARRLSNTSLRYWIIEFLRRQPKE 527
+ +A S++Y ++EF++ E
Sbjct: 609 REVVAAEAERASIKYKMVEFMKEHIGE 635
>gi|336412863|ref|ZP_08593216.1| ribonuclease R [Bacteroides ovatus 3_8_47FAA]
gi|335942909|gb|EGN04751.1| ribonuclease R [Bacteroides ovatus 3_8_47FAA]
Length = 718
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 174/382 (45%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L + +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|449128466|ref|ZP_21764712.1| hypothetical protein HMPREF9733_02115 [Treponema denticola SP33]
gi|448940874|gb|EMB21778.1| hypothetical protein HMPREF9733_02115 [Treponema denticola SP33]
Length = 623
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 184/392 (46%), Gaps = 28/392 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DL+HL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLSHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAERNRKKREAAGAVSIDMPEVQIKVETENDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+ + G+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQLLKFIDGKEV 523
Query: 485 PFSAGQLEGMAS--IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+ L +A+ I A R S ++W + +L + P + Q A+IL IK+ T
Sbjct: 524 MKTDDLLMRIAAGDIAGKNCSYAERASR---QHWTLIYLLQNP-DWQGEAVILETIKN-T 578
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
A + + +G + + I + + VK E+
Sbjct: 579 ARISIPSIGYETEMRLKKELSINERINVKAED 610
>gi|160884747|ref|ZP_02065750.1| hypothetical protein BACOVA_02736 [Bacteroides ovatus ATCC 8483]
gi|237721941|ref|ZP_04552422.1| ribonuclease R [Bacteroides sp. 2_2_4]
gi|423291213|ref|ZP_17270061.1| ribonuclease R [Bacteroides ovatus CL02T12C04]
gi|423293671|ref|ZP_17271798.1| ribonuclease R [Bacteroides ovatus CL03T12C18]
gi|156109782|gb|EDO11527.1| ribonuclease R [Bacteroides ovatus ATCC 8483]
gi|229448810|gb|EEO54601.1| ribonuclease R [Bacteroides sp. 2_2_4]
gi|392663824|gb|EIY57369.1| ribonuclease R [Bacteroides ovatus CL02T12C04]
gi|392677629|gb|EIY71045.1| ribonuclease R [Bacteroides ovatus CL03T12C18]
Length = 718
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 174/382 (45%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L + +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|293373757|ref|ZP_06620103.1| ribonuclease R [Bacteroides ovatus SD CMC 3f]
gi|292631247|gb|EFF49879.1| ribonuclease R [Bacteroides ovatus SD CMC 3f]
Length = 718
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 174/382 (45%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L + +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|422939477|ref|ZP_16966858.1| ribonuclease R [Fusobacterium nucleatum subsp. animalis ATCC 51191]
gi|339890702|gb|EGQ79791.1| ribonuclease R [Fusobacterium nucleatum subsp. animalis ATCC 51191]
Length = 549
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 180/382 (47%), Gaps = 42/382 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A
Sbjct: 92 NRKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARN 151
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+L PMFP++++ SL + E + + + G + Y V S+IK
Sbjct: 152 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIKSV 211
Query: 304 YMLTYESATELLHLN---LEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ +TY++ +L + + E ++ LK + E + + + ++G+ID E ++ +
Sbjct: 212 HRMTYKAVNGILDGDKDLINEYSDIYEMLKQMLELSKILRAKKHKRGSIDFELPELKVVL 271
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------ 410
E E + Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 272 DKDEKVEKV---YLKDRGE-GEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKI 327
Query: 411 -----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH----- 448
NI F + E R+ ++ + K R+
Sbjct: 328 VKLNEILAKFGYKIPNFDNIHPKQFQEIIEMS-RNKETSMLVHKTILTSLKQARYTVEDT 386
Query: 449 GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
G GL Y FTSPIRRY DL+ H + + + PF L+ +A ++ R+A
Sbjct: 387 GHFGLASSHYTHFTSPIRRYADLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAM 446
Query: 507 RLSNTSLRYWIIEFLRRQPKER 528
+ + S+R ++E+++++ E+
Sbjct: 447 KAEDESVRIKLVEYMQKRVGEK 468
>gi|390945305|ref|YP_006409066.1| RNAse R [Belliella baltica DSM 15883]
gi|390418733|gb|AFL86311.1| RNAse R [Belliella baltica DSM 15883]
Length = 733
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 177/391 (45%), Gaps = 53/391 (13%)
Query: 171 ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
IS+ + K E + NRKD + + ID +A + DDA+S L +G ++ +H+AD T Y
Sbjct: 258 ISDEISKEE--IKNRKDFRGITTFTIDPADAKDFDDAISYRVLDNGNFEIGVHIADVTHY 315
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--G 288
++P + +K+A R TSV+L T PM PE+L+ SLR E + +T S V D
Sbjct: 316 VKPKTGLEKEAYDRATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEMDENA 373
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEA-----ELKILSEAAALRLQWRLQQG 343
+ ++ + ++I YE A E N++ ++ EL L++ A + R +G
Sbjct: 374 DVVKHWIGRTVIHSDRRFAYEQAQE----NIDNQSGDFFEELTFLNDMAKKLRRRRFDKG 429
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA- 402
A++ T+E + ++ P + L+V+++ D +++ E M+L +A + N
Sbjct: 430 AVNFETVEVKFQLDEKGTP---LGLFVKERKD-IHKMIEEFMLLANRTVAEFIFDKNKGA 485
Query: 403 --LPYRGQPQSNID--------VSAFAH---LPEGPVRSSAIVKIMR------------- 436
YR +++ F H + EG S A+ ++M
Sbjct: 486 DTFVYRVHDHPDLERLETFSNFAKKFGHEIKVGEGNRISKALNQLMDEIQGKPEQNVLEQ 545
Query: 437 ------AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQ 490
A AI +P H L Y FTSPIRRY D++ H ++ L G P S
Sbjct: 546 LAIRSMAKAIYTVEPKGHFGLAFKHYTHFTSPIRRYPDMMVHRLLQHYLDGGKSPESETW 605
Query: 491 LEGMASIVNMQTRIARRLSNTSLRYWIIEFL 521
+ + + R A S++Y +EF+
Sbjct: 606 EDKCLHSSDREKR-ASNAERASIKYKQVEFM 635
>gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum
ATCC 824]
gi|337735931|ref|YP_004635378.1| bifunctional ribonuclease/ribosomal protein S1 [Clostridium
acetobutylicum DSM 1731]
gi|384457440|ref|YP_005669860.1| FUSION ribonuclease and ribosomal protein S1 domain protein
[Clostridium acetobutylicum EA 2018]
gi|15023595|gb|AAK78692.1|AE007586_9 FUSION ribonuclease and ribosomal protein S1 domain [Clostridium
acetobutylicum ATCC 824]
gi|325508129|gb|ADZ19765.1| FUSION ribonuclease and ribosomal protein S1 domain protein
[Clostridium acetobutylicum EA 2018]
gi|336292941|gb|AEI34075.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum
DSM 1731]
Length = 730
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/370 (27%), Positives = 172/370 (46%), Gaps = 47/370 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ +K+ ID ++A +LDDA+S +L +G K+ +H+AD + Y+ + DK+A+KR
Sbjct: 244 RRDIRDVKMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHIADVSNYVREDNPLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL + A++ + + G + ++ + SIIK
Sbjct: 304 ATSVYLIDRVIPMLPKKLSNGICSLNPRQDRLAMSCFMEIDPTGKVIQHEIFESIIKTNE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
+TY T++L + EE + K + E A++ + RL +GAID E++I
Sbjct: 364 RMTYTDVTKILRDHDEETIKAFEYLYDDFKNMEELASILNKKRLLRGAIDFDFEESKITL 423
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
++ P + +P + A R++ E M++C E IA + + N+ YR + +
Sbjct: 424 NELGKPVEVKPY-------ERAVANRIIEEFMLVCNETIAEHFYWANIPFVYRVHEEPDS 476
Query: 414 D----VSAFAHLPEGPVRSSAIVK-----------------------IMRAAAIDFRKPV 446
+ + F H VR + V ++R+ P
Sbjct: 477 EKLERFNEFIHNLGYAVRWGSEVHPKQLQDVIEKIKGKKEETVVSTLLLRSLKQARYSPE 536
Query: 447 RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRI 504
G GL Y FTSPIRRY DL+ H +K + G + +L G +MQ+
Sbjct: 537 CSGHFGLAARYYCHFTSPIRRYPDLIIHRIMKEYINGRMDEKRSKKLIGEVDYASMQSSE 596
Query: 505 ARRLSNTSLR 514
R++ + R
Sbjct: 597 MERVAQEAER 606
>gi|449549781|gb|EMD40746.1| CsMn04 [Ceriporiopsis subvermispora B]
Length = 1467
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 163/350 (46%), Gaps = 52/350 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL +++ ID D A +LDDALS +DG V +HVAD + +++P + D+DA KR
Sbjct: 894 RKDLRGERIFTIDPDTAKDLDDALSVKANEDGTYDVGVHVADVSYFVKPNTALDRDARKR 953
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P L+ + SL GE A TV + +G + + S+I+ T
Sbjct: 954 ATSVYLIQRAVPMLPPALSEQLCSLVPGEDRLAFTVIFTMTKEGKVLKKWFGKSVIRSTA 1013
Query: 305 MLTYESA------TELLHLNLEEEAE------LKILSEAAALRLQWRLQQGAIDTATLET 352
L+YE+A EL++ + E E +KIL A L R Q G + T +L+
Sbjct: 1014 KLSYENAQAVLQGKELINKPVGEHNEADIANDIKILDSLAQLLRSRRFQNGCVKTESLKL 1073
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS--FNNLALPYRGQPQ 410
K+ + P ++ + D+ + A LV E M+L A+A + F+ AL R
Sbjct: 1074 SFKLDDNGMP---VDCWPHDRIE-AHHLVEEFMLLTNIAVAQQIAVHFSEQALLRRHDAP 1129
Query: 411 ----------------SNIDVSAFAHL------PEGPV----------RSSAIVKIMRAA 438
+D+S+ A L + P ++S K A
Sbjct: 1130 IERRLVAFVQRAERLGYKMDISSVATLMSSLQAVQDPTARRILEMLLQKASPRAKYFCAG 1189
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR-GESPPFS 487
+D K H L +P Y FTSPIRRY D+L H Q+ + L+ G P F+
Sbjct: 1190 MLDIAK-YTHYALNVPLYTHFTSPIRRYADILVHRQLDSILQNGAEPKFT 1238
>gi|262405839|ref|ZP_06082389.1| ribonuclease R [Bacteroides sp. 2_1_22]
gi|294647800|ref|ZP_06725352.1| ribonuclease R [Bacteroides ovatus SD CC 2a]
gi|345510350|ref|ZP_08789918.1| ribonuclease R [Bacteroides sp. D1]
gi|229443054|gb|EEO48845.1| ribonuclease R [Bacteroides sp. D1]
gi|262356714|gb|EEZ05804.1| ribonuclease R [Bacteroides sp. 2_1_22]
gi|292636708|gb|EFF55174.1| ribonuclease R [Bacteroides ovatus SD CC 2a]
Length = 718
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 173/382 (45%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEIKDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L + +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|452856992|ref|YP_007498675.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452081252|emb|CCP23019.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 777
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 56/346 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY ++L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
+ A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|295398254|ref|ZP_06808299.1| ribonuclease R [Aerococcus viridans ATCC 11563]
gi|294973513|gb|EFG49295.1| ribonuclease R [Aerococcus viridans ATCC 11563]
Length = 838
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 154/338 (45%), Gaps = 52/338 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+ D+L RKD L ID +A +LDDA+S +L +G ++ +H+AD + Y+ S
Sbjct: 254 SNDDLKGRKDHRDLLTITIDGADAKDLDDAISLSKLPNGNYQLGVHIADVSYYVTEDSAM 313
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A +RGTSV+L PM P++L+ SL + +T++ ++ D G I +Y +
Sbjct: 314 DKEAYERGTSVYLTDRVVPMLPQRLSNGICSLHPN--VDRLTMTAIMEIDHNGGIVDYDI 371
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----LKILSEAAALR---LQWRLQQGAIDT 347
SII Y +TY ++ N E E +L A L R+ +GAID
Sbjct: 372 HPSIIHSDYRMTYSDVNAIITDNDSELREKYSEITDMLENMATLHEILYNKRVSRGAIDF 431
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--Y 405
+ E +I V P I V ++ R++ M+ E +A G F LP Y
Sbjct: 432 DSSEAKIIVDGEGHPTAI---EVRERG-VGERMIESFMLSANETVA--GHFTRKVLPFIY 485
Query: 406 RGQPQSNID--------VSAFAHLPEG-----------------------PVRSSAIVKI 434
R Q + D V+AF +P+G PV S +++
Sbjct: 486 RVHEQPDEDRMQRFLEFVTAFGIVPQGTKSSIRPKDIQNVLREVEGETFQPVVSMMLLRS 545
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M+ A D +P+ H L Y FTSPIRRY DL+ H
Sbjct: 546 MKQAKYDI-EPIGHYGLAAEDYTHFTSPIRRYPDLIVH 582
>gi|429506660|ref|YP_007187844.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488250|gb|AFZ92174.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 777
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 56/346 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY ++L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
+ A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 534 KQAKYD---PHSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|268316759|ref|YP_003290478.1| ribonuclease R [Rhodothermus marinus DSM 4252]
gi|262334293|gb|ACY48090.1| ribonuclease R [Rhodothermus marinus DSM 4252]
Length = 751
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 171/379 (45%), Gaps = 43/379 (11%)
Query: 193 VYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPT 252
V+ ID +A + DDAL RL +G I+V +H+AD + Y+ PGS D++A +RGTSV+L
Sbjct: 277 VFTIDPSDAKDFDDALHLRRLPNGHIEVGVHIADVSYYVRPGSALDEEAYQRGTSVYLVD 336
Query: 253 ATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESAT 312
PM PEKL+ + SLR GE +V + L + Y + ++I TYE A
Sbjct: 337 RVIPMLPEKLSNQVCSLRPGEDKLTYSVLMELTPSARVVRYQIRETVIHSRQRFTYEEAQ 396
Query: 313 ELLHLNLEEEAELKILSEAAALRL-QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVE 371
++ AE L+ A +L + R++ GAID E ++++ +P I +Y +
Sbjct: 397 AIIDGADHPLAEPVRLAHELAQKLRKARMEAGAIDFDLPEVKVELDEAGNP---IRIYRK 453
Query: 372 DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL---------- 421
++ A +L+ E M+L +A A P+ + D L
Sbjct: 454 ERL-AAHQLIEEFMLLANRLVAETIGKRTEAPPFVYRIHDRPDAEKIRQLAQYVRVFGYH 512
Query: 422 ------------------------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYV 457
PE PV A ++ M A + + H L Y
Sbjct: 513 LELTEDGTVSSKALNELLQHVKGTPEEPVIEEAALRAMAKARYSTQN-IGHYGLAFDFYT 571
Query: 458 QFTSPIRRYMDLLAHYQVKACLRG--ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRY 515
FTSPIRRY DL+ H +K L+ ++P A +LE + + R A S+R+
Sbjct: 572 HFTSPIRRYPDLMVHRLLKQYLKKAEKAPVVDADELEARCRHCSERERAAEEAERDSVRF 631
Query: 516 WIIEFLRRQPKERQYRALI 534
++++++ ER +R ++
Sbjct: 632 KQVQYMQQHVGER-FRGVV 649
>gi|375144261|ref|YP_005006702.1| ribonuclease R [Niastella koreensis GR20-10]
gi|361058307|gb|AEV97298.1| ribonuclease R [Niastella koreensis GR20-10]
Length = 699
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 176/382 (46%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + R+D+ + + ID +A + DDALS L++G ++ +H+AD + ++EP + DK
Sbjct: 191 DEIKLRRDVREVLTFTIDPVDARDFDDALSIRLLKNGLYEIGVHIADVSHFVEPDTALDK 250
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVDN 297
+A R TSV+LP PM PE+++ E SLR E + +T S + G I++Y +
Sbjct: 251 EAYDRATSVYLPDRVAPMLPERISNELCSLRPHE--DKLTFSAIFQITDAGEISQYWLGK 308
Query: 298 SIIKPTYMLTYESATELLHLNLE-EEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I + TYE E++ + E+ +L++ A R +GAI+ ++ E R K+
Sbjct: 309 TVIHSDHRFTYEEVQEIIEKGEGLYQGEILLLNKLAQQFRAKRFNKGAINFSSQEVRFKL 368
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF----NNLALPYRGQPQS 411
P I + V++ + A +L+ E M+L +A G +L PYR
Sbjct: 369 DETGKP---IGIMVKESKE-AHQLIEEFMLLANRIVAENVGKVKVNKKDLPFPYRVHDTP 424
Query: 412 N-----------------IDVS-------AFAHL-------PEGPVRSSAIVKIMRAAAI 440
+ D S +F + PE V ++ M A AI
Sbjct: 425 DEQKLAPFVEFAKKYGHTFDTSTPEGIAASFNQMLQDVQGKPEQHVLEQLGIRTM-AKAI 483
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+ + H LG Y FTSPIRRY D++ H ++ L+G P +LE +
Sbjct: 484 YTTENIGHYGLGFKQYCHFTSPIRRYPDVMVHRILQDVLKGNPEP--EKKLEQKCKHCSE 541
Query: 501 QTRIARRLSNTSLRYWIIEFLR 522
+ R A + +Y +E+++
Sbjct: 542 KERSAMEAERAANKYKQVEYMK 563
>gi|366166400|ref|ZP_09466155.1| ribonuclease R [Acetivibrio cellulolyticus CD2]
Length = 784
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 165/350 (47%), Gaps = 53/350 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL L++ ID ++A +LDDA+S +L++G K+ +H+AD + Y+ S D++A+KR
Sbjct: 246 RRDLRGLRMVTIDGEDAKDLDDAVSVEKLKNGNYKLGVHIADVSHYVTEDSPLDREALKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P+ L+ SL + TV + + S G + ++ + S+I
Sbjct: 306 GTSVYLVDRVIPMLPKALSNGICSLNPQIDRLSFTVMMEIDSTGKVVDHEIFESVINTNE 365
Query: 305 MLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAIDTATLETR 353
+TY + ++L +E++ EL K + E A + R+Q+GAID E +
Sbjct: 366 RMTYTNVYKIL---VEKDKELLERYDYLIDDFKAMEELAMILRNKRMQRGAIDFDFEEAK 422
Query: 354 IKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
I + E +PI I Y + A +++ E M+ C E +A + + N+ YR +
Sbjct: 423 ILL--DEKGKPIQIKRY---EITIANKIIEEFMLACNETVAEHFFWANVPFVYRVHEDPD 477
Query: 413 ID----VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH-------------------- 448
D S F H ++ I KI A D + V++
Sbjct: 478 TDKIENFSEFVHNLGYTLK--GINKIHPKALQDLLQKVKNTREERIISTVMLRSLQKAKY 535
Query: 449 -----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQL 491
G GL Y FTSPIRRY DL+ H +K L+G+ G+L
Sbjct: 536 THLNQGHFGLAAKYYCHFTSPIRRYPDLIIHRIMKEYLKGQMDAKREGEL 585
>gi|294806194|ref|ZP_06765041.1| ribonuclease R [Bacteroides xylanisolvens SD CC 1b]
gi|294446450|gb|EFG15070.1| ribonuclease R [Bacteroides xylanisolvens SD CC 1b]
Length = 703
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 173/382 (45%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ G + DK
Sbjct: 242 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGGIIDK 301
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I + + +++
Sbjct: 302 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEIKDSRIVHTV 361
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 362 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 419
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L + +A G N A LPYR
Sbjct: 420 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 475
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 476 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 535
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 536 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 593
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 594 NMEQIAANAERASIKYKQVEFM 615
>gi|255506981|ref|ZP_05382620.1| exoribonuclease II [Chlamydia trachomatis D(s)2923]
gi|389858090|ref|YP_006360332.1| exoribonuclease II [Chlamydia trachomatis F/SW4]
gi|389859842|ref|YP_006362082.1| exoribonuclease II [Chlamydia trachomatis F/SW5]
gi|380249162|emb|CCE14454.1| exoribonuclease II [Chlamydia trachomatis F/SW5]
gi|380250037|emb|CCE13565.1| exoribonuclease II [Chlamydia trachomatis F/SW4]
gi|440527101|emb|CCP52585.1| exoribonuclease R [Chlamydia trachomatis D/SotonD1]
gi|440531565|emb|CCP57075.1| exoribonuclease R [Chlamydia trachomatis F/SotonF3]
Length = 694
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 174/404 (43%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISRTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHFQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----EHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +F+ QP Y+A I+
Sbjct: 537 RACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATL-YKAFII 579
>gi|125972670|ref|YP_001036580.1| ribonuclease R [Clostridium thermocellum ATCC 27405]
gi|281416859|ref|ZP_06247879.1| ribonuclease R [Clostridium thermocellum JW20]
gi|125712895|gb|ABN51387.1| ribonuclease R [Clostridium thermocellum ATCC 27405]
gi|281408261|gb|EFB38519.1| ribonuclease R [Clostridium thermocellum JW20]
Length = 757
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 159/349 (45%), Gaps = 49/349 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED + R+DL L + ID ++A +LDDA+S RL +G ++ +H+AD + Y++ GS
Sbjct: 239 TEDMIKGRRDLRDLTMVTIDGEDAKDLDDAVSIERLPNGNYRLGVHIADVSYYVKEGSPL 298
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A+KRGTSV+L PMFP++L+ SL A TV + + G + ++ +
Sbjct: 299 DKEALKRGTSVYLVDRVIPMFPKELSNGICSLNPKVDRLAFTVMMEIDKSGRVVDHEIFE 358
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I +TY ++L N E E + E A + + R+ +GAID
Sbjct: 359 SVINVNERMTYTDVYKILEENDEGLIERYKYLCDTFHTMKELALILRKKRMDRGAIDFNF 418
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + E PI + Y + A ++ E M++C E +A + + N YR
Sbjct: 419 DEAKIVL--DEKGVPIEVKRY---EMTIANNIIEEFMLVCNETVAEHFFWTNTPFVYRIH 473
Query: 409 PQSNID----VSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ D S F H E + S+ +++ ++ A
Sbjct: 474 EDPDPDKIEAFSEFVHNLGYTLKGINKIHPKALQDVLEKARGTKEETIISTVMLRSLQKA 533
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPP 485
+ G GL Y FTSPIRRY DL+ H +K L+G P
Sbjct: 534 RYSH---INSGHFGLAAKYYCHFTSPIRRYPDLIIHRIMKEYLKGTVNP 579
>gi|154490007|ref|ZP_02030268.1| hypothetical protein PARMER_00236 [Parabacteroides merdae ATCC
43184]
gi|423723010|ref|ZP_17697163.1| ribonuclease R [Parabacteroides merdae CL09T00C40]
gi|154089449|gb|EDN88493.1| ribonuclease R [Parabacteroides merdae ATCC 43184]
gi|409241840|gb|EKN34607.1| ribonuclease R [Parabacteroides merdae CL09T00C40]
Length = 726
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 131/496 (26%), Positives = 219/496 (44%), Gaps = 62/496 (12%)
Query: 79 ELVAIRKRLRVFAKVKVSSGE---LLEDK-LENQVLQKGLLLEFKKDSDRVLLAVAQRPD 134
E++ ++RL + K++V+ G + EDK L N + L+ K D+ ++ + + P+
Sbjct: 156 EILESQRRL-ITGKLQVTRGFAFLITEDKTLANDIFIPKDKLKGGKSGDKAIVRITEWPE 214
Query: 135 GKKNWM--VYDQNGASCSIKPQQ----VTFVVP-----GVEKFDHKDISNFLQKAEDNLL 183
KN + V D G + + F +P VEK K IS+ + E+ +
Sbjct: 215 EAKNPLGEVVDILGTAGDNDAEMNAILAEFDLPYKYPANVEKAAEK-ISDAI--PEEEIA 271
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D + + ID +A + DDALSA +L +G +V +H+AD T Y++P SL D++A
Sbjct: 272 KREDFRGVTTFTIDPKDAKDFDDALSARKLDNGNWEVGVHIADVTYYVKPESLIDREAFS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E +V L+ + I + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPNEEKLCFSVIFELNKNAEIQQSHITRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRIKVANPEDP 362
TYE A ++ E E + A +L+ R + GAI E + + E+
Sbjct: 392 RRFTYEEAQAVIETGEGEYKEEILALNGLAQKLRDRRFKDGAIAFDRYEVKFDI--DENG 449
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATY-GSFNN---LALPYR----GQPQSNID 414
+P + Y+++ + A +L+ E M+L +A + G N YR P+ D
Sbjct: 450 KP-LGTYIKESKE-ANKLIEEFMLLANRTVAEFIGKSKNKTKKTFVYRIHEQPDPEKLRD 507
Query: 415 VSAFAHL----------------------------PEGPVRSSAIVKIMRAAAIDFRKPV 446
SAF PE + + ++ M+ A +
Sbjct: 508 FSAFISRFGYKMRTEGTKTDISKGINKLLDSVQGKPEENLVETLAIRSMQKAHYT-TDNI 566
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
H L + Y FTSPIRRY D++ H ++ L G E M+ +A
Sbjct: 567 GHYGLAMDYYTHFTSPIRRYPDMMVHRLLERYLAGGRSVIKNKYEEYCKHCSEMEM-VAS 625
Query: 507 RLSNTSLRYWIIEFLR 522
+S++Y +EF++
Sbjct: 626 NAERSSIKYKQVEFMK 641
>gi|394994272|ref|ZP_10386996.1| ribonuclease R [Bacillus sp. 916]
gi|393804885|gb|EJD66280.1| ribonuclease R [Bacillus sp. 916]
Length = 777
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 56/346 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+ RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALDRGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY ++L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
+ A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|218258472|ref|ZP_03474839.1| hypothetical protein PRABACTJOHN_00494 [Parabacteroides johnsonii
DSM 18315]
gi|423342570|ref|ZP_17320284.1| ribonuclease R [Parabacteroides johnsonii CL02T12C29]
gi|218225444|gb|EEC98094.1| hypothetical protein PRABACTJOHN_00494 [Parabacteroides johnsonii
DSM 18315]
gi|409217487|gb|EKN10463.1| ribonuclease R [Parabacteroides johnsonii CL02T12C29]
Length = 726
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 129/496 (26%), Positives = 219/496 (44%), Gaps = 62/496 (12%)
Query: 79 ELVAIRKRLRVFAKVKVSSGE---LLEDK-LENQVLQKGLLLEFKKDSDRVLLAVAQRPD 134
E++ +RL + K++V+ G + EDK L N + L+ K D+ ++ + + P+
Sbjct: 156 EILESERRL-ITGKLQVTKGFAFLITEDKTLANDIFIPKDKLKGGKTGDKAIVRITEWPE 214
Query: 135 GKKNWM--VYDQNGASCSIKPQQ----VTFVVP-----GVEKFDHKDISNFLQKAEDNLL 183
KN + V D G + + F +P VEK K IS + E+ +
Sbjct: 215 EAKNPLGEVVDILGTAGENNAEMNAILAEFNLPYKYPVNVEKAAEK-ISEAI--PEEEIA 271
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D + + ID +A + DDALSA +L +G +V +H+AD T Y++P SL D++A
Sbjct: 272 KREDFRGITTFTIDPKDAKDFDDALSARKLDNGNWEVGVHIADVTYYVKPESLIDREAFS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+ D + + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNKDAEVQQSHITRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRIKVANPEDP 362
TYE A ++ + E ++ + A +L+ R + GAI E + + E+
Sbjct: 392 RRFTYEEAQVVIETGEGDYKEEILMLNSMAQKLRDRRFKDGAIAFDRYEVKFDI--DENG 449
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATY-GSFNNL---ALPYR----GQPQSNID 414
+P + Y+++ + A +L+ E M+L +A + G N YR P+ D
Sbjct: 450 KP-LGTYIKESKE-ANKLIEEFMLLANRTVAEFVGKSKNRTKKTFVYRIHEQPDPEKLRD 507
Query: 415 VSAFAHL----------------------------PEGPVRSSAIVKIMRAAAIDFRKPV 446
SAF PE + + ++ M+ A +
Sbjct: 508 FSAFISRFGYKMRTEGTKTDISKGINKLLDNVQGKPEENLVETLAIRSMQKAHYT-TDNI 566
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
H L + Y FTSPIRRY D++ H ++ L G + E M+ +A
Sbjct: 567 GHYGLAMDYYTHFTSPIRRYPDMMVHRLLERYLAGGRSVIKSKYEEYCKHCSEMEI-VAS 625
Query: 507 RLSNTSLRYWIIEFLR 522
+S++Y +EF++
Sbjct: 626 NAERSSIKYKQVEFMK 641
>gi|91200154|emb|CAJ73198.1| similar to ribonuclease R [Candidatus Kuenenia stuttgartiensis]
Length = 730
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 172/354 (48%), Gaps = 44/354 (12%)
Query: 168 HKDISNFLQK-----AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYI 222
HK +SN +K ++ + R DL + ID D+A + DDALS + + G ++ +
Sbjct: 230 HKKVSNEAEKISQEIPQEEIQTRLDLRKKLIITIDPDDAKDFDDALSLEKDERGNWQLGV 289
Query: 223 HVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSV 282
H+AD + Y++ S DK+A RGTSV+LP PM PE L+ SLR+GE +V V
Sbjct: 290 HIADVSYYVKQDSAIDKEARLRGTSVYLPGKVIPMLPEALSNNLCSLREGEDRLTKSVLV 349
Query: 283 VLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHL----NLEEEAE--LKILSEAAALRL 336
+ +G+I + +V +S+I T LTY+ AT +++ N+ E + L L++ A +
Sbjct: 350 TIDPEGNILKSTVKHSVINVTKRLTYKQATAIINNESAGNIPEMVKDVLVELAQLAQILF 409
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYG 396
+ ++ +GAI+ E +K+ D E I +++ D + RLV E M+L E +AT+
Sbjct: 410 KNKMNRGAIELDLPEVSLKL----DEEGNIEKVEKEERDVSHRLVEECMLLANEMVATFM 465
Query: 397 SFNNLALPYRGQPQSN-IDVSAFAHL---------------------------PEGPVRS 428
N L L R P+ + D+ FA PE + +
Sbjct: 466 HKNKLPLISRVHPEPDEEDMLEFADFVRGLENTRVDPFKIHQLQAFLAEIRGKPEAHMVN 525
Query: 429 SAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
++K M+ A + H L L Y FTSPIRRY DL+ H + GE
Sbjct: 526 LVLLKSMKQAVYSATES-GHFALALENYAHFTSPIRRYPDLIIHRTLDQHFSGE 578
>gi|308175107|ref|YP_003921812.1| ribonuclease R [Bacillus amyloliquefaciens DSM 7]
gi|307607971|emb|CBI44342.1| ribonuclease R [Bacillus amyloliquefaciens DSM 7]
Length = 777
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 56/346 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMNRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGTAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
+ A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|384160988|ref|YP_005543061.1| ribonuclease R [Bacillus amyloliquefaciens TA208]
gi|384165876|ref|YP_005547255.1| ribonuclease R [Bacillus amyloliquefaciens LL3]
gi|384170071|ref|YP_005551449.1| ribonuclease R [Bacillus amyloliquefaciens XH7]
gi|328555076|gb|AEB25568.1| ribonuclease R [Bacillus amyloliquefaciens TA208]
gi|328913431|gb|AEB65027.1| ribonuclease R [Bacillus amyloliquefaciens LL3]
gi|341829350|gb|AEK90601.1| ribonuclease R [Bacillus amyloliquefaciens XH7]
Length = 777
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 56/346 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMNRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGTAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
+ A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|110803809|ref|YP_698614.1| ribonuclease R [Clostridium perfringens SM101]
gi|110684310|gb|ABG87680.1| ribonuclease R [Clostridium perfringens SM101]
Length = 751
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 168/367 (45%), Gaps = 41/367 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ YS+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNYSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDKELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I++ ++A A R++ E M++C E IA Y + + YR + + +
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 415 ------------VSAFAHLPE------------GPVRSSAIVKIMRAAAIDFR-KPVRHG 449
+ F L E G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYLFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL H +K + + P A +L + + Q+ R
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYINKKIDPKRAKRLLSIVDSASKQSSEMER 601
Query: 508 LSNTSLR 514
++ + R
Sbjct: 602 IAQEAER 608
>gi|384266907|ref|YP_005422614.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387899984|ref|YP_006330280.1| ribonuclease R [Bacillus amyloliquefaciens Y2]
gi|380500260|emb|CCG51298.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387174094|gb|AFJ63555.1| ribonuclease R [Bacillus amyloliquefaciens Y2]
Length = 777
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 56/346 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
+ A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|375089667|ref|ZP_09735992.1| ribonuclease R [Facklamia languida CCUG 37842]
gi|374566514|gb|EHR37753.1| ribonuclease R [Facklamia languida CCUG 37842]
Length = 785
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 166/365 (45%), Gaps = 42/365 (11%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L R DL + ID +A +LDDA+S ++ D ++ +H+AD + Y+ GS D++
Sbjct: 256 DLQGRDDLRDQLIITIDGADAKDLDDAISLQKVSDNEYQLGVHIADVSHYVTEGSPIDRE 315
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P++L+ SL E +T + ++ G + Y + S+I
Sbjct: 316 AYERGTSVYLTDRVVPMLPQRLSNGICSLHPHEDRLTLTCQMTINKQGKVTNYRLFKSVI 375
Query: 301 KPTYMLTYESATELLHLNL----EEEAELKILSEAAALR---LQWRLQQGAIDTATLETR 353
+ Y +TY +L +L E E +++L E A L LQ R Q+GA+D E +
Sbjct: 376 QSAYRMTYRDVNAILDGDLALRKEYEEIVEMLDEMAELHQILLQMRKQRGALDFDAPEAK 435
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP-Q 410
I V P+ II Q RL+ M++ E +A + N YR QP +
Sbjct: 436 IVVDEEGHPQDIILR----QRYTGERLIESFMLIANETVAAHVLQKNYPFLYRIHEQPDE 491
Query: 411 SNID-----VSAFAHLPEG------PVRSSAIVKIMRAAAID----------------FR 443
+ +D +++F + G P + A +K ++ +
Sbjct: 492 AKMDRFADFITSFGIILRGDTAKIEPKQLQAALKQVKGTEFEQVVSTMMLRSMQQAKYSE 551
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEG-MASIVNMQT 502
+P H L Y FTSPIRRY DL+ H + L+ LEG + I + +
Sbjct: 552 EPAGHFGLASEDYTHFTSPIRRYPDLIVHRLLSKYLQKAPSHKEVLALEGNLPGIADHSS 611
Query: 503 RIARR 507
++ RR
Sbjct: 612 KMERR 616
>gi|154687491|ref|YP_001422652.1| ribonuclease R [Bacillus amyloliquefaciens FZB42]
gi|154353342|gb|ABS75421.1| Rnr [Bacillus amyloliquefaciens FZB42]
Length = 777
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 56/346 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
+ A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|375363806|ref|YP_005131845.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421730233|ref|ZP_16169362.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451345484|ref|YP_007444115.1| ribonuclease R [Bacillus amyloliquefaciens IT-45]
gi|371569800|emb|CCF06650.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407076199|gb|EKE49183.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449849242|gb|AGF26234.1| ribonuclease R [Bacillus amyloliquefaciens IT-45]
Length = 777
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 56/346 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
+ A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|225848501|ref|YP_002728664.1| ribonuclease R [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644714|gb|ACN99764.1| ribonuclease R [Sulfurihydrogenibium azorense Az-Fu1]
Length = 701
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 171/369 (46%), Gaps = 44/369 (11%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT + ID + A + DDA+ A+ + ++Y+H+AD + Y++ GS D++A +
Sbjct: 241 NRKDLTKQICFTIDPESARDHDDAV-AIEKEGENYRLYVHIADVSYYVKEGSAIDREAFQ 299
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LP M PE+LA SLR E A T ++++ G + +Y + S+I+
Sbjct: 300 RGNTYYLPERALHMLPERLASNLCSLRPFERKYAFTCEMLINKKGEVIDYKIYESVIESK 359
Query: 304 YMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY+ A ++ L E + LK + E A + ++ + ++G+ID E++I
Sbjct: 360 AKLTYDQALAII-LGEPEHVKAFPDLVEPLKHMEELAKILMKAKEERGSIDFDMPESQIL 418
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
DP ++ + A R++ E MI+ E +A + NL YR + I+
Sbjct: 419 FDEKGDPYDVVPY----ERHLAHRIIEEFMIIANETVARHMEKLNLPFIYRVHEKPKIEK 474
Query: 415 VSAFAHL----------PEGPVRSSAIVKIMRAAA-------IDF----------RKPVR 447
V+AF + P+G V I K++ A + F P
Sbjct: 475 VNAFVDIMAGLGYKVEYPKGEVEPKFIQKLIEMAVGTPEESLVRFLALRTMKQAKYSPYN 534
Query: 448 HGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIA 505
G GL Y FTSPIRRY D+ H +K ++ + +L I+ Q A
Sbjct: 535 IGHFGLASECYTHFTSPIRRYADVWVHRLLKKAIKKKFTKKDLEELPKKLEIIAQQCSQA 594
Query: 506 RRLSNTSLR 514
R+++ + R
Sbjct: 595 ERVADDAER 603
>gi|423346443|ref|ZP_17324131.1| ribonuclease R [Parabacteroides merdae CL03T12C32]
gi|409220261|gb|EKN13217.1| ribonuclease R [Parabacteroides merdae CL03T12C32]
Length = 726
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 131/496 (26%), Positives = 219/496 (44%), Gaps = 62/496 (12%)
Query: 79 ELVAIRKRLRVFAKVKVSSGE---LLEDK-LENQVLQKGLLLEFKKDSDRVLLAVAQRPD 134
E++ ++RL + K++V+ G + EDK L N + L+ K D+ ++ + + P+
Sbjct: 156 EILESQRRL-ITGKLQVTRGFAFLITEDKTLANDIFIPKDKLKGGKTGDKAIVRITEWPE 214
Query: 135 GKKNWM--VYDQNGASCSIKPQQ----VTFVVP-----GVEKFDHKDISNFLQKAEDNLL 183
KN + V D G + + F +P VEK K IS+ + E+ +
Sbjct: 215 EAKNPLGEVVDILGTAGDNNAEMNAILAEFDLPYKYPANVEKAAEK-ISDAI--PEEEIA 271
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D + + ID +A + DDALSA +L +G +V +H+AD T Y++P SL D++A
Sbjct: 272 KREDFRGVTTFTIDPKDAKDFDDALSARKLDNGNWEVGVHIADVTYYVKPESLIDREAFS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E +V L+ + I + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSVIFELNKNAEIQQSHITRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRIKVANPEDP 362
TYE A ++ E E + A +L+ R + GAI E + + E+
Sbjct: 392 RRFTYEEAQAVIETGEGEYKEEILALNGLAQKLRDRRFKDGAIAFDRYEVKFDI--DENG 449
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATY-GSFNN---LALPYR----GQPQSNID 414
+P + Y+++ + A +L+ E M+L +A + G N YR P+ D
Sbjct: 450 KP-LGTYIKESKE-ANKLIEEFMLLANRTVAEFIGKSKNKTKKTFVYRIHEQPDPEKLRD 507
Query: 415 VSAFAHL----------------------------PEGPVRSSAIVKIMRAAAIDFRKPV 446
SAF PE + + ++ M+ A +
Sbjct: 508 FSAFISRFGYKMRTEGTKTDISKGINKLLDSVQGKPEENLVETLAIRSMQKAHYT-TDNI 566
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
H L + Y FTSPIRRY D++ H ++ L G E M+ +A
Sbjct: 567 GHYGLAMDYYTHFTSPIRRYPDMMVHRLLERYLAGGRSVIKNKYEEYCKHCSEMEM-VAS 625
Query: 507 RLSNTSLRYWIIEFLR 522
+S++Y +EF++
Sbjct: 626 NAERSSIKYKQVEFMK 641
>gi|28210140|ref|NP_781084.1| exoribonuclease II [Clostridium tetani E88]
gi|28202576|gb|AAO35021.1| exoribonuclease II [Clostridium tetani E88]
Length = 708
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 167/366 (45%), Gaps = 51/366 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ NR DL +K+ ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKNRLDLRDIKIITIDGEDAKDLDDAISIEKLPNGNFYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KRGTSV+L PM P++L+ SL + +T+S + D G + + V
Sbjct: 298 KEALKRGTSVYLVDRVIPMLPKELSNGICSLNPK--VDRLTLSCFMEIDKTGKVIAHKVA 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTA 348
S+I + +TY ++L N +E K + E + + R+ +GAID
Sbjct: 356 ESVINSSERMTYTDVNKILKDNDQELIKKYDYLMENFKSMEELCKVLYKKRINRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E +I + ED +P+ I Y + + A R++ E M++C E IA Y ++N+ YR
Sbjct: 416 FEECKIIL--DEDGKPVDIKPY---EREIANRMIEEFMLVCNETIAEYMFWSNIPFVYRI 470
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAIVK-----------------------------IMRAA 438
+ D+ H E +K ++R+
Sbjct: 471 HEEP--DLEKLQHFNEFVYNLGYTIKYSKEVHPKSLQQVVEKVRGKKEEVVINTLLLRSL 528
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
P G GL Y FTSPIRRY DL+ H +K ++ +LEG S
Sbjct: 529 KQAKYSPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYIKNGISEKRVKKLEGEVS 588
Query: 497 IVNMQT 502
++Q+
Sbjct: 589 SASIQS 594
>gi|194336956|ref|YP_002018750.1| ribonuclease R [Pelodictyon phaeoclathratiforme BU-1]
gi|194309433|gb|ACF44133.1| ribonuclease R [Pelodictyon phaeoclathratiforme BU-1]
Length = 770
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 158/338 (46%), Gaps = 48/338 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++L R D+ V+ ID +A + DDALS L+DG+ K+ +H+AD + Y+ S
Sbjct: 294 TDEDLKGRLDIRDKVVFTIDPVDAKDFDDALSIEMLEDGQYKIGVHIADVSHYVPENSPL 353
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+KR TSV+L PM P +L+ + SL G A +V + L +DG + ++ +
Sbjct: 354 DREALKRATSVYLVDRVIPMLPARLSEQICSLNPGVDRMAFSVFLTLSADGEVRKHEFNK 413
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I YE E+L + EL+ L + L + R + G +D T E R K+
Sbjct: 414 TVIHSKRRFAYEDVEEILKQGKGDFVDELQALDRLSVLLREKRFKHGGLDFETEEVRFKL 473
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSFN-NLALP----YR--G 407
+ +P ++ + + + RL+ E M+L +A Y +F N P YR G
Sbjct: 474 GSKGEPLEVM----KKERLGSHRLIEEFMLLANRKVAKYLTKTFKENKKEPQPVIYRVHG 529
Query: 408 QPQSNIDVSAFAHL-------------PEGPVRSSA----IVKIMRAAAIDF-------- 442
PQ V A+ EGP+ S++ +++ ++ + I+F
Sbjct: 530 APQQE-KVLILANFVKRLGFDLKLNRGKEGPIVSASALRQLLQQVKGSNIEFLVSELVLR 588
Query: 443 --------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V H LG Y FTSPIRRY DL+ H
Sbjct: 589 CMSKAVYTGDNVGHYGLGFEHYTHFTSPIRRYPDLIVH 626
>gi|42526879|ref|NP_971977.1| RNB-like [Treponema denticola ATCC 35405]
gi|449112059|ref|ZP_21748614.1| hypothetical protein HMPREF9735_01663 [Treponema denticola ATCC
33521]
gi|449113137|ref|ZP_21749652.1| hypothetical protein HMPREF9721_00170 [Treponema denticola ATCC
35404]
gi|41817194|gb|AAS11888.1| RNB-like family protein [Treponema denticola ATCC 35405]
gi|448956340|gb|EMB37101.1| hypothetical protein HMPREF9735_01663 [Treponema denticola ATCC
33521]
gi|448960717|gb|EMB41426.1| hypothetical protein HMPREF9721_00170 [Treponema denticola ATCC
35404]
Length = 623
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 183/392 (46%), Gaps = 28/392 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK + +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVSCI 357
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP-EDPEP 364
++ E ++ NL K L E A + R GA+ E +IKV E+ +
Sbjct: 358 SFEKADEEKMNTNL------KHLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENENQKV 411
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+ + G+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQLLKFIDGKEV 523
Query: 485 PFSAGQLEGMAS--IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+ L +A+ I A R S ++W + +L + P + Q A+IL IK+ T
Sbjct: 524 MKTDDLLMRIAAGDIAGKNCSYAER---ASRQHWTLIYLLQNP-DWQGEAVILETIKN-T 578
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
A + + +G + + I + + VK E+
Sbjct: 579 ARISIPSIGYETEMRLKKELSINERINVKAED 610
>gi|260494523|ref|ZP_05814653.1| ribonuclease R [Fusobacterium sp. 3_1_33]
gi|260197685|gb|EEW95202.1| ribonuclease R [Fusobacterium sp. 3_1_33]
Length = 701
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 174/381 (45%), Gaps = 40/381 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A
Sbjct: 244 NRKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARN 303
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+L PMFP++++ SL + E + + + G + Y V S+IK
Sbjct: 304 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIKSV 363
Query: 304 YMLTYESATELL--HLNLEEEAE-----LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ +TY++ +L NL E LK + E + + + +G+ID E ++ +
Sbjct: 364 HRMTYKAVNGILDGDKNLINEYSDIYEMLKQMLELSKILRAKKHIRGSIDFELPELKVVL 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------ 410
E E + Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 424 DKDEKVEKV---YLKDRGE-GEKIIEDFMIAANETVAERIFWLELASIYRTHEKPDREKI 479
Query: 411 -----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKP------VR 447
NI F + E + + + ++ +
Sbjct: 480 VRLNEILAKFGYKIPNFDNIHPKQFQEIIERSKDKETSMLVHKTILTSLKQARYTVEDIG 539
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
H L Y FTSPIRRY DL+ H + + + PF L+ +A ++ R+A +
Sbjct: 540 HFGLASSHYTHFTSPIRRYADLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMK 599
Query: 508 LSNTSLRYWIIEFLRRQPKER 528
+ S+R ++E+++++ E+
Sbjct: 600 AEDESVRIKLVEYMQKRVGEK 620
>gi|449102772|ref|ZP_21739519.1| hypothetical protein HMPREF9730_00416 [Treponema denticola AL-2]
gi|448965574|gb|EMB46235.1| hypothetical protein HMPREF9730_00416 [Treponema denticola AL-2]
Length = 623
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 184/392 (46%), Gaps = 28/392 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
++LTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 ENLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGISRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV +D + +
Sbjct: 357 ISFEKADEE-----KTNANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETEDDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+ + G
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQLLKFIDGNEV 523
Query: 485 PFSAGQLEGMAS--IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRT 542
+ L +A+ I A R S ++W + +L + P + Q A+IL IK+ T
Sbjct: 524 MKTDDLLMRIAAGDIAGKNCSYAER---ASRQHWTLIYLLQNP-DWQGEAVILETIKN-T 578
Query: 543 AALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
A + + +G + + I + + VK E+
Sbjct: 579 ARISIPSIGYETEMRLKKELSINECINVKAED 610
>gi|333997539|ref|YP_004530151.1| ribonuclease II family protein [Treponema primitia ZAS-2]
gi|333739006|gb|AEF84496.1| ribonuclease II family protein [Treponema primitia ZAS-2]
Length = 641
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 163/349 (46%), Gaps = 21/349 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMR-LQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL+ L+ YAID + + DDA+S + G +Y+HVADP I GS D +A
Sbjct: 238 RTDLSGLEAYAIDSPWSHDPDDAVSLEKHPAGGPDTLYVHVADPAASILSGSPGDLEARG 297
Query: 244 RGTSVFLPTATYPMFPEK-LAMEGMSLRQ-------GEVCNAVTVSVVLHSDGSIAEYSV 295
RG +++LP T M E+ L++ + L E+ A++ ++L DGSI E +
Sbjct: 298 RGATLYLPEGTARMLAEESLSLYALGLSSIPDTSPATELSPALSFKLLLGDDGSILETDI 357
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+I+ T L+Y A + + L L + A L+ R+ GA+ ET +
Sbjct: 358 FPSLIRVT-RLSYAGADA--QVAGDANPVLAGLFQIAERNLRRRMAAGAVVIELPETHMS 414
Query: 356 VANPEDP--EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
V PE P + +++++ + A +V E M+L GE A + L PY Q ++
Sbjct: 415 VNLPEKPGADGTVSIHLLENYKSA-DMVRECMLLAGEGAAGWALQKRLPFPYVSQETGDL 473
Query: 414 DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHY 473
S G S + + MR + KP H LGL Y Q TSP+RRY DLLAH
Sbjct: 474 PSSPLP----GMAGSYQLRRCMRPRTLSV-KPGLHWGLGLDQYTQVTSPLRRYTDLLAHQ 528
Query: 474 QVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLR 522
Q++A L G + P S L + + S +WI +LR
Sbjct: 529 QIRALLSG-AVPLSEDDLMVALAAGEAAAAATVQAERASRAHWIAVYLR 576
>gi|323491515|ref|ZP_08096695.1| exoribonuclease II [Vibrio brasiliensis LMG 20546]
gi|323314240|gb|EGA67324.1| exoribonuclease II [Vibrio brasiliensis LMG 20546]
Length = 667
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 191/429 (44%), Gaps = 55/429 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP-DGKKNWMVYDQ---NGASCSIKPQQVTFVVPGVEKF 166
+KG+ + K+ D V+ + + P G + V A I P VT +
Sbjct: 116 RKGIKSDDLKEGDWVVAHLTRHPLKGDNGFFVEISEKITDADDKIAPWWVTLAQNDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I N+ Q +D L R D+TH+ ID ++DDAL A + + G ++ I +AD
Sbjct: 176 EPAGIDNW-QIKDDADLQRVDMTHVPFVTIDGASTKDMDDALYAKKTESGDFELTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P S DK A +RG +++LP PM P LA E SL Q E+ A+ +V +
Sbjct: 235 PTAYITPDSEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMQDEIRPALCCTVTISK 294
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQ 337
DG IA + + IK L Y+ ++ L E + ++ L E + R
Sbjct: 295 DGVIADDIQFFAANIKSHARLVYDQVSDWLENGQSPEWQPSEQIATIVRDLYEFSLARAD 354
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG----E 390
WR + + + R +++ D ++ ++ D A RLV E MI +C +
Sbjct: 355 WREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANRLVEEAMITANICAGRTLK 410
Query: 391 AIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG--PVRSSAIVKI------------MR 436
G FN A +P+ DV +F + P+G P + ++V +
Sbjct: 411 ETFNSGVFNTHA---GFKPEKIADVLSFVN-PDGELPFSAESVVTLEGFAELRRWLGQQE 466
Query: 437 AAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ +D R +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 467 TSYLDNRIRKFQSYSEMGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILGKAP 526
Query: 485 PFSAGQLEG 493
+A + G
Sbjct: 527 EQTADETVG 535
>gi|383115522|ref|ZP_09936278.1| ribonuclease R [Bacteroides sp. D2]
gi|313695072|gb|EFS31907.1| ribonuclease R [Bacteroides sp. D2]
Length = 718
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 170/382 (44%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + ID +A + DDALS +L+DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKTTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDYKEEV-LTLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L +A + + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEFVGKVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|302872504|ref|YP_003841140.1| ribonuclease R [Caldicellulosiruptor obsidiansis OB47]
gi|302575363|gb|ADL43154.1| ribonuclease R [Caldicellulosiruptor obsidiansis OB47]
Length = 732
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 178/369 (48%), Gaps = 55/369 (14%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+I N + +++L R DL + ++ ID ++A + DDA+S +L +G + +H+AD
Sbjct: 251 KEIENIPDEVTQEDLEGRVDLRNWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADV 310
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y++P + DK+A +RGTSV+L PM P KL+ SL + +T SV++ D
Sbjct: 311 SHYVKPNTHLDKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEID 368
Query: 288 --GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAAL 334
G++ ++ + S+I+ +TY + T++L EE+ E L+++ E A +
Sbjct: 369 KQGNVVKHDIFESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALI 425
Query: 335 RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT 394
+ R+++GA+D ET++ + P +I + + +++ E M++C E +A
Sbjct: 426 LREKRMKRGALDFDFDETKVILDKNGKPIDVIRY----ELTISNKIIEEFMLICNETVAN 481
Query: 395 YGSFNNLALPYRGQPQSNID-VSAFAHL------------------------------PE 423
+ + N+ YR + +I+ + FA PE
Sbjct: 482 HFYWLNVPFLYRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPE 541
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
V + ++ ++ A + + H L Y FTSPIRRY DL+ H +K L+G+
Sbjct: 542 ERVIHTLCLRSLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIHRIMKDVLKGKM 600
Query: 484 PPFSAGQLE 492
A +L+
Sbjct: 601 TEKKAQRLK 609
>gi|424828182|ref|ZP_18252923.1| ribonuclease R [Clostridium sporogenes PA 3679]
gi|365979665|gb|EHN15718.1| ribonuclease R [Clostridium sporogenes PA 3679]
Length = 719
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 173/378 (45%), Gaps = 51/378 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRRKDLRDLTIVTIDGEDAKDLDDAISLEKLPNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHKVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKRRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQSIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
P G GL Y FTSPIRRY DL+ H +K + G+ A +L
Sbjct: 532 RY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATRLTTEVE 588
Query: 497 IVNMQTRIARRLSNTSLR 514
+ Q+ R++ + R
Sbjct: 589 YASKQSSEMERVAQEAER 606
>gi|255037464|ref|YP_003088085.1| ribonuclease R [Dyadobacter fermentans DSM 18053]
gi|254950220|gb|ACT94920.1| ribonuclease R [Dyadobacter fermentans DSM 18053]
Length = 795
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 193/425 (45%), Gaps = 49/425 (11%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L R+D+ + + ID +A + DDALS L + ++V +H+AD + Y+ PG+ +K+
Sbjct: 279 DLAKRRDIRDVLTFTIDPVDAKDFDDALSVRYLDEDVVEVGVHIADVSHYVLPGTELEKE 338
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A++R TSV+L T PM PEKL+ SLR E A + + S G + + ++I
Sbjct: 339 ALRRATSVYLVDRTVPMLPEKLSNNLCSLRPNEDRLAFSAIFEITSKGKLLKEWFGRTVI 398
Query: 301 KPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
TYE A +L + EL L++ A + + R ++GAI+ T E R ++
Sbjct: 399 HSDRRFTYEEAQAVLDSGEGDFPKELDTLNKLAKIFRKERFKKGAINFETPEVRFRL--- 455
Query: 360 EDPEP-IINLYVEDQADPAMRLVSEMMILCGEAIATY----------------------- 395
DPE + +Y +++ D + +L+ E M+L + +A Y
Sbjct: 456 -DPEGRPLGIYTKERHD-SNKLIEEFMLLANKRVAEYVYSLSKGEDKNTMVYRIHEAPDP 513
Query: 396 ---GSFNN----LALPYRGQPQSNIDVSAFAHL------PEGPVRSSAIVKIMRAAAIDF 442
+F N L L + +S I S A L PE + S V+ M A A
Sbjct: 514 DRLQTFANFVAKLGLKLEVEEESKIAKSMNAMLAKVEGKPEQNLIESLAVRTM-AKARYS 572
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQT 502
+ + H L Y FTSPIRRY D++AH ++ L G E + + +
Sbjct: 573 TEDLGHFGLAFRRYSHFTSPIRRYPDVMAHRLLQHYLDG-GANVDQETYERASKHSSERE 631
Query: 503 RIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGA 562
R+A S++Y +E++ E+++ +I T + VE+ A+ +
Sbjct: 632 RLAAEAERASIKYKQVEYMSMMDPEKEFGGIITGV----TEFGIFVEITETASEGLIRMT 687
Query: 563 QIGDE 567
+GD+
Sbjct: 688 DLGDD 692
>gi|406025405|ref|YP_006705706.1| ribonuclease R [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
gi|404433004|emb|CCM10286.1| Ribonuclease R [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
Length = 697
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 171/395 (43%), Gaps = 45/395 (11%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E + R+D+ H+ + ID +A + DDALS L +G +V IH+AD + Y+ P SL
Sbjct: 236 TEKEITKRRDMRHIPTFTIDPVDAKDFDDALSYQPLANGHHQVGIHIADVSHYVIPDSLL 295
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A R TSV+L PM PE L+ SLR E + L + G + + +
Sbjct: 296 DKEAYARNTSVYLVDRCIPMLPEILSNGLCSLRPNETKLTFSAIFELDAQGKVYDKWLGE 355
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE-LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+II +YE A + + + L +L+ A R Q+GAI+ ETR V
Sbjct: 356 TIIYSDKRFSYEEAQMAIDFQRGDFYQALTVLNHLAKQIHAKRSQKGAIN---FETRSLV 412
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF-----NNL--ALPYRGQ- 408
+ + + + + + D A +L+ E M+L + +ATY ++ NL YR
Sbjct: 413 FDLDTNGKPLKVTSKCRTD-AHKLIEEFMLLANQEVATYAAYLKQKQENLRPTFIYRTHG 471
Query: 409 ---PQSNIDVSAFAHL--------------------------PEGPVRSSAIVKIMRAAA 439
P D F + E P+ S ++ M A A
Sbjct: 472 YPDPDKLNDFFLFVNQLGYKINRAKTSIYKAMHDLEKAIQGKKEAPIIQSLAIRSM-AKA 530
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ KP H L Y FTSPIRRY D+L H +K L+GE + E
Sbjct: 531 LYTTKPDPHFALAFAHYTHFTSPIRRYPDVLVHRLLKQYLKGEH-IYDVASYEKKCQYAV 589
Query: 500 MQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
+ +A S++Y +EF++ KE+ + +I
Sbjct: 590 EKEYLAANAERASIKYKQVEFIQNL-KEQIFEGII 623
>gi|333897318|ref|YP_004471192.1| ribonuclease R [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112583|gb|AEF17520.1| ribonuclease R [Thermoanaerobacterium xylanolyticum LX-11]
Length = 715
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 163/354 (46%), Gaps = 44/354 (12%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+ N +K + + + R DL HL + ID ++A +LDDA++ +L+ G +Y+ +AD
Sbjct: 227 KEAENIQEKISSEEITGRIDLRHLNIVTIDGEDAKDLDDAVAVEKLESGDYVLYVSIADV 286
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y++ GS DK+A+ RG SV+ PM P +L+ SL E +TV + + +
Sbjct: 287 SHYVKEGSELDKEALNRGCSVYFIDRVIPMLPHRLSNGICSLNPSEDRLTLTVKMKIDKN 346
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWR 339
G++ ++ + SII+ +TY + ++L N E+ E + + A + L+ R
Sbjct: 347 GNVIDHDIFESIIRSKERMTYTNVYKILEENDEKLKERYKDLIEDFNNMRDLAKILLERR 406
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN 399
++G++D E +I V P I+ + + + A R++ E M++ E +A + +
Sbjct: 407 KRRGSVDFDFEEAKIIVDEKGKPIDIVKI----ERNVAHRIIEEFMLVANETVAEHMHWI 462
Query: 400 NLALPYRGQPQSNID----VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR-------- 447
N+ YR +++ + F H ++ +I A + K VR
Sbjct: 463 NVPFVYRVHEHPDMEKLMAFNKFIHNLGYHIKGIGGDEIHPKALQELIKQVRGKNEQRVV 522
Query: 448 -------------------HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 523 ETLLLRSLKRARYSPEDLGHYALATQYYTHFTSPIRRYPDLIIHRIIKENIHGK 576
>gi|312131136|ref|YP_003998476.1| rnase r [Leadbetterella byssophila DSM 17132]
gi|311907682|gb|ADQ18123.1| RNAse R [Leadbetterella byssophila DSM 17132]
Length = 739
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 170/400 (42%), Gaps = 55/400 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + R+D+ + + ID +A + DDALS L++G +V IH+AD + Y+ PG+L +
Sbjct: 249 EEEIKKRRDVRDILTFTIDPFDAKDFDDALSFRTLENGNYEVGIHIADVSHYVRPGTLLE 308
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A+KR TSV+L T PM PEKL+ SLR E + ++ + +
Sbjct: 309 EEALKRATSVYLVDRTIPMLPEKLSNNLCSLRPHEDKLVFSAIFEMNDKAEVLKEWFGRC 368
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I+ TYE A E+L +E L L+ A + R ++GA + T E + ++
Sbjct: 369 IMHSDRRFTYEEAQEILDGKEDETYSPVLHTLNNMAHILRDERFKKGAFNFETDEVKFRL 428
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS 416
P + +Y + + D A +L+ E M+L +AT F + P +P + +
Sbjct: 429 DEEGKP---LGIYQKVRKD-AHKLIEEFMLLANRRVAT---FVHNKGPKDQEPYTMV--- 478
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFR--------------------KPVR--------- 447
H P P + V+ + KP++
Sbjct: 479 YRVHEPPNPSKLETFVRFANKMGFSIKSGSTQQLSQSLNRLMTEIEGKPIQNVLESLAVR 538
Query: 448 -------------HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGM 494
H L Y FTSPIRRY D++AH ++ L G A + E
Sbjct: 539 TMSKARYSTQNLGHFGLAFDHYSHFTSPIRRYPDIMAHRMLQHYLDG-GKSLPAAEFEQK 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
A + ++A S++Y +E++ Q + Y L+
Sbjct: 598 AEHSSAMEKLAAEAERASIKYKQVEYMSLQARNVVYNGLV 637
>gi|385266262|ref|ZP_10044349.1| ribonuclease R [Bacillus sp. 5B6]
gi|385150758|gb|EIF14695.1| ribonuclease R [Bacillus sp. 5B6]
Length = 777
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 160/346 (46%), Gaps = 56/346 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+ RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALDRGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
+ A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|325103978|ref|YP_004273632.1| RNAse R [Pedobacter saltans DSM 12145]
gi|324972826|gb|ADY51810.1| RNAse R [Pedobacter saltans DSM 12145]
Length = 705
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 177/382 (46%), Gaps = 43/382 (11%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++ + R+D + ID +A + DDA+S +L++G ++ +H+AD + Y++P S
Sbjct: 243 SQEEIKKRRDFRDTLTFTIDPFDAKDFDDAISFKKLENGNYEIGVHIADVSHYVQPESSL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM PE+L+ SLR E + + ++ + I
Sbjct: 303 DKEAFERGTSVYLVDRVIPMLPERLSNNLCSLRPLEDKLSFSAVFEINDEAQILNEWYGK 362
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKI-LSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE A E++ E AE I L++ A + R +QGAI+ + E + K+
Sbjct: 363 TVINSNRRFTYEEAQEIIENESGEYAEEIITLNKLAYILRDKRFKQGAINFESAEVKFKL 422
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF-----NNLALPYRGQPQS 411
E+ +PI +YV+++ D A +L+ + M+L +A + S + L YR
Sbjct: 423 --DENGKPI-GVYVKERKD-AHKLIEDFMLLANRKVAEFISKKGKGKHRLTFVYRAHDSP 478
Query: 412 NID-VSAFAHLP--------------------------EGPVRSSAIVKIM---RAAAID 441
N++ ++ F+ EG + + ++ A AI
Sbjct: 479 NMETLNTFSQFASRFGYKISTKSDRDISRSLNKLMADVEGKKEQNVLTQLAIRSMAKAIY 538
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL-RGESPPFSAGQLEGMASIVNM 500
K H L Y FTSPIRRY D+L H ++ L G++ + E MA +
Sbjct: 539 TTKSSSHYGLAFDFYTHFTSPIRRYPDVLVHRLLEHYLHHGDNA--NVEHYEKMALHASQ 596
Query: 501 QTRIARRLSNTSLRYWIIEFLR 522
+ A S++Y E+L+
Sbjct: 597 MEKKAADAERASIKYKQAEYLQ 618
>gi|224537309|ref|ZP_03677848.1| hypothetical protein BACCELL_02187 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521084|gb|EEF90189.1| hypothetical protein BACCELL_02187 [Bacteroides cellulosilyticus
DSM 14838]
Length = 714
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 177/384 (46%), Gaps = 48/384 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++ + R+D ++ + ID +A + DDALS +L+DG +V +H+AD T Y+ GS+
Sbjct: 252 SDEEIAKREDFRNVSTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVTEGSII 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + V +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFNINEKGDVKDSRVVH 371
Query: 298 SIIKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++IK TYE A +++ + +EE L + + A ALR Q R GAI+ E +
Sbjct: 372 TVIKSDRRFTYEEAQQIIETKEGDFKEEI-LMLDTIAKALR-QKRFVAGAINFDRYEVKF 429
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR--- 406
++ P I++Y + D A +LV E M+L +A G N A PYR
Sbjct: 430 EIDEKGKP---ISVYFKVSKD-ANKLVEEFMLLANRTVAEKIGRVPKNKKAKVFPYRIHD 485
Query: 407 -GQPQ--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRA 437
P+ + DVS + HL E + + ++ M+
Sbjct: 486 LPDPEKLDNLAQFIARFGYKIRTGGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQK 545
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASI 497
A + H L Y FTSPIRR+ D++ H + L G S + E +
Sbjct: 546 ARYSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLLTKYLNG-GRSVSETKYEDLCDH 603
Query: 498 VNMQTRIARRLSNTSLRYWIIEFL 521
+ +IA S++Y +EF+
Sbjct: 604 SSNMEQIAANAERASIKYKQVEFM 627
>gi|384431097|ref|YP_005640457.1| ribonuclease R [Thermus thermophilus SG0.5JP17-16]
gi|333966565|gb|AEG33330.1| ribonuclease R [Thermus thermophilus SG0.5JP17-16]
Length = 742
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 161/343 (46%), Gaps = 47/343 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E L R+D L+V+ ID +A + DDA+ RL G ++ +H+AD + Y++ G
Sbjct: 216 LEIPEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPGG-YRIGVHIADVSHYVKEG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
SL D++A RGTSV+LP PM PE+L+ SLR GE ++V V L + +
Sbjct: 275 SLLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTENLEVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELL-----HLNLEEEAELKILSEAAALRLQWRLQQGAID 346
+I+ LTY E+ E H L E +L++L + + RL++GA+D
Sbjct: 335 FREGVIRSVARLTYTEVEAFAEGFGFPEAHAFLAE--DLRLLLDLTQRMREKRLKEGALD 392
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPY 405
E +++V + L++ QA+P R L+ E+M+L +A Y L +
Sbjct: 393 FGFPEVKVEVGEEGE------LHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLF 446
Query: 406 RGQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMRA 437
R + D A A L PE PV + +++ +R
Sbjct: 447 RVHEEPVQDAYEKLRQALARLGYTLPPKLSGHALQKALLASRGRPEEPVVAYLVLRSLRL 506
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
A + H L + Y+ FTSPIRRY DL+ H +KA LR
Sbjct: 507 ARYAPEN-LGHFGLAMEHYLHFTSPIRRYPDLVVHRVLKAALR 548
>gi|344997094|ref|YP_004799437.1| ribonuclease R [Caldicellulosiruptor lactoaceticus 6A]
gi|343965313|gb|AEM74460.1| ribonuclease R [Caldicellulosiruptor lactoaceticus 6A]
Length = 716
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 168/349 (48%), Gaps = 54/349 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++L R DL ++ ID ++A + DDA+S +L +G + +H+AD + Y++P +
Sbjct: 245 TEEDLEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTHL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A +RGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 DKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEIDKQGNVVKHDI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWRLQQGA 344
S+I+ +TY + T++L EE+ E L+++ E A + + R+++GA
Sbjct: 363 FESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALILREKRMKRGA 419
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ET++ + P ++ + + +++ E M++C E +A + + N+
Sbjct: 420 LDFDFDETKVILDKNGKPIDVVRY----ELTVSNKIIEEFMLICNETVANHFYWLNVPFL 475
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 476 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPEERVIHTLCLR 535
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
++ A + + H L Y FTSPIRRY DL+ H +K L+G+
Sbjct: 536 SLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIHRIMKDVLKGK 583
>gi|388578941|gb|EIM19272.1| RNB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 931
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 166/395 (42%), Gaps = 54/395 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRL-QDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R+D + L VY ID A+ELDD +S +DG V++H+ADPT I A
Sbjct: 453 HRRDFSKLPVYVIDDAGANELDDGMSVEPTDKDGNTWVHVHIADPTSVIPFNHPLSILAK 512
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+R TSV+LP T PM P++ M SL A+T S L G I Y V S I
Sbjct: 513 ERHTSVYLPHRTIPMLPKEFCMSNFSLGSRSPQQALTFSAQLDDKGRIRNYDVSPSFINN 572
Query: 303 TYMLTYESATELL----------------------HLNLEEEAELKILSEAAALRLQWRL 340
++ Y + E+L ++ E+ L +S+ A L R+
Sbjct: 573 IKIMQYNAVDEVLGADALQNDNRLLDKSPNKASNTSISTEDIDTLGRVSQLAVLHSTRRV 632
Query: 341 QQGAIDTATLETRIKVANPE-----------DPEPIINLYV--EDQADPAMRLVSEMMIL 387
+ G + T +V D P + L Q PA VS+ M +
Sbjct: 633 ENGMLFWHTFTPEAQVTPLPLPTPPSELALWDGRPSVKLLAVPNVQQSPARFAVSQFMSI 692
Query: 388 CGEAIATY-------GSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMR--AA 438
E A + G F LP P S D+ + G V S+ + K M +
Sbjct: 693 ACEVTALWCRDHDVPGIFRGAGLPEVNDPSSLEDLMGKRDIVTGVVSSADVGKSMASFSG 752
Query: 439 AIDFRKPVRHGVLGLP-GYVQFTSPIRRYMDLLAHYQVKACLRGESPP-----FSAGQLE 492
+ KP+ H + G P GY + TSP+RRY D+++HYQ+K+ + P + +
Sbjct: 753 STLSTKPIPHLLNGCPDGYARVTSPLRRYNDMVSHYQIKSAILSIRQPRDKISWMYPTHD 812
Query: 493 GMASIV---NMQTRIARRLSNTSLRYWIIEFLRRQ 524
+A + I +RLSN YW++ L+++
Sbjct: 813 SLAQYLIRTKQNDSIYQRLSNNVNAYWVVRELKKR 847
>gi|150391304|ref|YP_001321353.1| ribonuclease R [Alkaliphilus metalliredigens QYMF]
gi|149951166|gb|ABR49694.1| ribonuclease R [Alkaliphilus metalliredigens QYMF]
Length = 706
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/446 (24%), Positives = 201/446 (45%), Gaps = 60/446 (13%)
Query: 120 KDSDRVLLAVAQRPDGKKN------WMVYDQNGASCSI----KPQQVTFVVPGVEKFDHK 169
K+ D+V+ A+ + P ++N ++ ++ A I + ++ P + + K
Sbjct: 172 KNGDKVVCAITKWPGARRNPEGKVIEIIGHKDDAGTDILAIMRKHKLNPNFPQAVEAEIK 231
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
D+ + + +E +R DL L++ ID +A +LDDA+S RL++G ++ +H+AD T
Sbjct: 232 DLPDEVPDSEKK--DRVDLRDLQMVTIDGADAKDLDDAVSIERLEEGNYRLGVHIADVTH 289
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y+ + DK+A+ R TSV+L PM P KL+ SL A++V + + S+G
Sbjct: 290 YVREETALDKEALARATSVYLVDRVIPMLPRKLSNGLCSLNPKVDRLALSVFMEVASNGK 349
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW----------- 338
+ ++ + SIIK + YE +++L ++AELK + QW
Sbjct: 350 VVKHEIVESIIKTDERMIYEEVSDILE---HDDAELKQKYDYLVQDFQWMEKLATILRGR 406
Query: 339 RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF 398
R ++GAID E+++ + + P + L + A R++ E M++C E +A + +
Sbjct: 407 REERGAIDFDFDESKVLLDDKGRPYDVKKL----ERRVANRIIEEFMLVCNETVAEHFYW 462
Query: 399 NNLALPYRGQ--------PQSNIDVSAFAHLPEG---------------PVRSSAIVKIM 435
N+ YR + N + F + +G ++ ++
Sbjct: 463 MNIPFIYRVHEDPSAERLEEFNKFIHNFGYHLKGLTTEIHPKALQDLLKKIKGKKEETVI 522
Query: 436 RAAAIDFRKPVRH-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSA 488
+ K R+ G GL Y FTSPIRRY DL H +K L+G+
Sbjct: 523 NTLMLRSLKKARYSAQSLGHFGLAADYYSHFTSPIRRYPDLEIHRIIKESLKGKLSQKRI 582
Query: 489 GQLEGMASIVNMQTRIARRLSNTSLR 514
+L +V Q+ R+++ + R
Sbjct: 583 DKLSQTVPVVAEQSSTRERVADEAER 608
>gi|261250798|ref|ZP_05943372.1| exoribonuclease II [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417953998|ref|ZP_12597039.1| exoribonuclease II [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260937671|gb|EEX93659.1| exoribonuclease II [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342816266|gb|EGU51168.1| exoribonuclease II [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 667
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 118/429 (27%), Positives = 193/429 (44%), Gaps = 55/429 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP-DGKKNWMVYDQNGASCS---IKPQQVTFVVPGVEKF 166
+KG+ + K+ D V+ + Q P G + V + + I P VT +
Sbjct: 116 RKGIKSDDLKEGDWVVAHLTQHPLKGDNGFFVEISEKITDTDDKIAPWWVTLAQNDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I N+ K +D L R D+TH+ ID ++DDAL A + + G ++ I +AD
Sbjct: 176 EPAGIDNWEIK-DDADLERVDMTHVPFVTIDGASTKDMDDALYAKKTESGDFELTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P S DK A +RG +++LP PM P LA E SL Q EV A+ +V +
Sbjct: 235 PTAYITPDSEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMQDEVRPALCCTVTVAK 294
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQ 337
DG I + + IK L Y+ ++ L E + ++ L + + R +
Sbjct: 295 DGVIGDDIKFFAANIKSHARLVYDHVSDWLENGESTEWQPNEEIAQIVRDLYDFSLARAE 354
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG----E 390
WR Q + + R +++ D ++ ++ D A RLV E MI +C +
Sbjct: 355 WREQNAVVFPDRPDYRFELSEDND---VVAIH-SDMRRSANRLVEEAMITANICAGRTLQ 410
Query: 391 AIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG--PVRSSAIVKI------------MR 436
+ G FN L ++ P+ DV F + PEG P + ++V +
Sbjct: 411 STFNSGVFNT-HLGFK--PEKIADVLGFVN-PEGELPFTAESVVTLEGFAELRRWLGKQE 466
Query: 437 AAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
++ +D R +P+ H +GL Y +TSPIR+Y D++ H +KA + G+ P
Sbjct: 467 SSYLDNRIRKFQAYSEIGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILGKEP 526
Query: 485 PFSAGQLEG 493
+A + G
Sbjct: 527 IQTADETVG 535
>gi|390935129|ref|YP_006392634.1| ribonuclease R [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570630|gb|AFK87035.1| ribonuclease R [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 715
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 163/357 (45%), Gaps = 50/357 (14%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+ N +K + D + R DL HL + ID ++A +LDDA++ +L G +Y+ +AD
Sbjct: 227 KEAENIQEKISSDEISGRTDLRHLNIVTIDGEDAKDLDDAVAVEKLDSGDYILYVSIADV 286
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y++ GS DK+A+ RG SV+ PM P +L+ SL E +TV + + +
Sbjct: 287 SHYVKEGSELDKEALNRGCSVYFIDRVIPMLPHRLSNGICSLNPSEDRLTLTVKMKIDRN 346
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELK-----------ILSEAAALRL 336
G++ ++ + S+I+ +TY + ++L E + ELK + + A + L
Sbjct: 347 GNVVDHDIFESVIRSKERMTYTNVHKILE---ESDKELKERYKDLIEDFNNMKDLAKILL 403
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYG 396
+ R ++G++D E +I V P I+ + + + A R++ E M++ E +A +
Sbjct: 404 ERRKRRGSVDFDFEEAKIIVDEKGKPVDIVKV----ERNIAHRIIEEFMLVANETVAEHM 459
Query: 397 SFNNLALPYRGQPQSNID----VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR----- 447
+ N+ YR +++ + F H ++ +I A + K VR
Sbjct: 460 HWINVPFVYRVHEHPDMEKLMAFNKFIHNLGYHIKGIGGDEIHPKALQELIKQVRGKNEQ 519
Query: 448 ----------------------HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 520 RVVETLLLRSLKRARYSPEDLGHYALATQYYTHFTSPIRRYPDLIIHRIIKENIHGK 576
>gi|333029457|ref|ZP_08457518.1| ribonuclease R [Bacteroides coprosuis DSM 18011]
gi|332740054|gb|EGJ70536.1| ribonuclease R [Bacteroides coprosuis DSM 18011]
Length = 723
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 171/380 (45%), Gaps = 42/380 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R+D ++ + ID +A + DDALS +L++G +V +H+AD T Y++ G + D
Sbjct: 253 KDEIEKREDFRNIATFTIDPKDAKDFDDALSIRQLKNGNWEVGVHIADVTHYVQEGDIID 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A KR TS++L T PM PE+L SLR E A +V L G + V ++
Sbjct: 313 QEAEKRATSIYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFELDEAGEVKHSHVAHT 372
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+IK TYE A ++ E A E+ +L+ A + R GA++ +E + ++
Sbjct: 373 VIKSDRRFTYEEAQAIIESKEGEYATEILMLNHLAQELRKLRFSDGALNFERVEVKFEID 432
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSFNN----LALPYR----GQ 408
P I++Y + ++ A +L+ E M+L +A G + LPYR
Sbjct: 433 EKGKP---ISVYFK-ESKEANKLIEEFMLLANRTVAEKVGKVGHNKKAKVLPYRIHDLPD 488
Query: 409 PQSNIDVSAFAHLPEGPVRSSA-----------------------IVKIMRAAAIDFRKP 445
P ++S F +R+S +++ + A+ +
Sbjct: 489 PDKLDNLSQFIARFGYKIRTSGSKSTVAHSLNVLLEDIQGKKEANLIETISIRAMQKARY 548
Query: 446 VRHGV----LGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQ 501
H + L Y FTSPIRRY D++ H + + G S S + E + +
Sbjct: 549 STHNIGHYGLAFDYYTHFTSPIRRYPDMMVHRLITRYMDGGS-DVSEDKYEDLCDHCSNM 607
Query: 502 TRIARRLSNTSLRYWIIEFL 521
IA S++Y +EF+
Sbjct: 608 ELIASNAERASIKYKQVEFM 627
>gi|365121736|ref|ZP_09338651.1| ribonuclease R [Tannerella sp. 6_1_58FAA_CT1]
gi|363645023|gb|EHL84303.1| ribonuclease R [Tannerella sp. 6_1_58FAA_CT1]
Length = 717
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 173/389 (44%), Gaps = 46/389 (11%)
Query: 171 ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
IS+ L E++L +R+D + + ID +A + DDALS +L +G +V +H+AD T Y
Sbjct: 248 ISDIL--TEEDLKDREDFRGITTFTIDPRDAKDFDDALSIRQLDNGNWEVGVHIADVTHY 305
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+ PGS+ DK+A KR TSV+L T PM PE+L + SLR E + L+ +
Sbjct: 306 VTPGSVIDKEAYKRATSVYLVDRTIPMLPERLCNQICSLRPDEDKLCFSAIFELNEKSEV 365
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTAT 349
+ ++I+ TYE A E++ + +E+ L++ A + R +G+I+
Sbjct: 366 QHSHITRTVIRSDRRFTYEEAQEIIESGRGDYSSEILKLNDLAQKLRERRFSEGSINFDR 425
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALP 404
E + ++ P +++Y + + A +LV E M+L +A G+ A
Sbjct: 426 HEVKFEIDENGRP---LSVYFK-VSKEANKLVEEFMLLANRTVAESVGKVDGNRTAKAFV 481
Query: 405 YR------------------------------GQPQSNID--VSAFAHLPEGPVRSSAIV 432
YR GQ +I+ + + PE + + +
Sbjct: 482 YRVHDLPDPEKMNTMATFIRRFGYTLRTEGTKGQISRSINSLLDNIQNKPEENLIETVAI 541
Query: 433 KIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
+ M A A K + H L Y FTSPIRRY D++ H ++ + G +A LE
Sbjct: 542 RTM-AKATYSTKNIGHYGLAFDYYTHFTSPIRRYPDMMVHRLLEKYMAG-GRSVNAKNLE 599
Query: 493 GMASIVNMQTRIARRLSNTSLRYWIIEFL 521
+ +A S++Y EFL
Sbjct: 600 SACKHSSEMELVAANAERASIKYKQAEFL 628
>gi|390945738|ref|YP_006409498.1| RNAse R [Alistipes finegoldii DSM 17242]
gi|390422307|gb|AFL76813.1| RNAse R [Alistipes finegoldii DSM 17242]
Length = 743
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 168/384 (43%), Gaps = 48/384 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + +D +A + DDALS R++DG ++ +H+AD T Y+ P S D +A++R
Sbjct: 261 RRDFRQVTTFTVDPADAKDFDDALSVRRVRDGVWEIGVHIADVTHYVRPQSTIDDEAVER 320
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L T PM PE+L+ E SLR E + L+ + I E ++I
Sbjct: 321 GTSVYLVDRTVPMLPERLSNELCSLRPHETSLCFSAVFTLNENLDILEEWFGRTVIYSDR 380
Query: 305 MLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY A E++ + AE L + A ALR Q R + GAI E + K+ P
Sbjct: 381 RFTYAEAQEVIETGRGDYAEEILTLNRLAQALRRQ-RFKNGAISFDREEVKFKLDETGKP 439
Query: 363 EPIINLYVEDQADPAMRLVSEMMIL--------CGEAIATYGSFNNLALPYR---GQPQS 411
+ +Y ++Q + + +++ E M+L CG+ G + YR +
Sbjct: 440 ---LGVYFKEQKE-SNQMIEEFMLLANRRVAEFCGKRKTDKGRTVERPMVYRVHDSPSEE 495
Query: 412 NID-----VSAFAHLPEGPVRSSAIVKIMR-----------------------AAAIDFR 443
+D + F H+ + + AI K + A A
Sbjct: 496 KLDRFRQFILRFGHIFKA-TKGRAIAKELNKLFAQIKGTTEENAVSTMAVRSMAKAYYTT 554
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTR 503
+ H L P Y FTSPIRRY D++ H + L + LE + + +
Sbjct: 555 DNIGHYGLAFPYYTHFTSPIRRYPDMMVHRLLARYL-ADGKAADKAMLEDLCFRASEREV 613
Query: 504 IARRLSNTSLRYWIIEFLRRQPKE 527
IA S++Y ++EF++ + E
Sbjct: 614 IAAEAERASIKYKMVEFMKERIGE 637
>gi|327403544|ref|YP_004344382.1| ribonuclease R [Fluviicola taffensis DSM 16823]
gi|327319052|gb|AEA43544.1| ribonuclease R [Fluviicola taffensis DSM 16823]
Length = 718
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 110/451 (24%), Positives = 188/451 (41%), Gaps = 63/451 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L++G +++ +H+AD ++Y++P S DK+A++R
Sbjct: 261 RRDFREILTFTIDPADAKDFDDALSIRKLENGHLEIGVHIADVSQYVKPDSAMDKEALRR 320
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+L PM PE+L+ SLR E + L +G + ++I +
Sbjct: 321 GNSVYLVDRVIPMLPEQLSNMVCSLRPKEDKFTFSAVFELDENGKMYNEWFGKTVIHSDH 380
Query: 305 MLTYESATELLH-LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
YE A E+L + EL IL + A + + R +QGA+ + E R K+ ++P
Sbjct: 381 RFAYEDAQEILEGAEGPYKEELHILDKIAKIYRKERFKQGALMINSEEIRFKLDENKEP- 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCG-----------------------------EAIAT 394
I++ V+ D A +L+ E M+L E IA
Sbjct: 440 --IDVVVKVSKD-AHQLIEEFMLLANKRVAMFVGAPQKGKDPVPFVYRIHDKPDPEKIAL 496
Query: 395 YGSFNN-------LALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+G F + P + N ++ E + ++ M A D +
Sbjct: 497 FGLFLDKFGYSLEFTSPEKAAQSINKLLNDIRLKNEYSIIQQMAIRSMAKATYD-TDNIG 555
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
H L Y FTSPIRRY DL+ H + CL ++ L+ + ++ R A
Sbjct: 556 HYGLAFQYYGHFTSPIRRYADLMVHRILLECLENRPHKYNNA-LDDICKRISRTERKATE 614
Query: 508 LSNTSLRYWIIEFLRRQPKER--------QYRALILRFIKDRTAALLLVE------VGLQ 553
S +Y+ + F+ + E L +R ++ ++ ++
Sbjct: 615 AERESNKYFQVVFVHDKIGEEFDGIVSGLAEFGLFVRMTENACEGMVAMQELPGDRYSFD 674
Query: 554 AAAWVSVGAQ------IGDEVEVKVEEAHPR 578
VG + GD V VK+ E HP+
Sbjct: 675 EKKMTIVGQKTGKTFHFGDSVRVKISEVHPK 705
>gi|168217054|ref|ZP_02642679.1| ribonuclease R [Clostridium perfringens NCTC 8239]
gi|182380798|gb|EDT78277.1| ribonuclease R [Clostridium perfringens NCTC 8239]
Length = 751
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 41/367 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ +S+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDQELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
P I++ ++A A R++ E M++C E IA Y + + YR
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 407 ----------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRHG 449
G+ D+ +G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL H +K + + P A +L + + Q+ R
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYINKKIDPKRAKRLLSIVDSASKQSSEMER 601
Query: 508 LSNTSLR 514
++ + R
Sbjct: 602 IAQEAER 608
>gi|422345960|ref|ZP_16426874.1| ribonuclease R [Clostridium perfringens WAL-14572]
gi|373227174|gb|EHP49494.1| ribonuclease R [Clostridium perfringens WAL-14572]
Length = 751
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 41/367 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ +S+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDQELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
P I++ ++A A R++ E M++C E IA Y + + YR
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 407 ----------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRHG 449
G+ D+ +G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL H +K + + P A +L + + Q+ R
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYINKKIDPKRAKRLLSIVDSASKQSSEMER 601
Query: 508 LSNTSLR 514
++ + R
Sbjct: 602 IAQEAER 608
>gi|384449235|ref|YP_005661837.1| 3'-5' exoribonuclease, VacB and RNase II family [Chlamydophila
pneumoniae LPCoLN]
gi|269303381|gb|ACZ33481.1| 3'-5' exoribonuclease, VacB and RNase II family [Chlamydophila
pneumoniae LPCoLN]
Length = 659
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/407 (27%), Positives = 184/407 (45%), Gaps = 54/407 (13%)
Query: 169 KDISNFLQKAEDNLLN-RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S F QK +L+ RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 173 EEASLFSQKHITQVLHSRKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNYILGVHIADV 232
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S DK+A KR S + P PM P L+ SL+ AV+V +
Sbjct: 233 SHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKS 292
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW---RLQQGA 344
G +++Y + S+I+ Y +TY+ ++ KIL+E A L ++ R ++G
Sbjct: 293 GHLSDYQIFRSVIRSKYRMTYDEVDNIIEKKHSHPLS-KILNEMATLSKKFSDIREERGC 351
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I + + N ++P +I E+ + +L+ E M+ E +A + S ++LP
Sbjct: 352 IRFVLPSVTMSLDNLQEPVALI----ENHQTFSHKLIEEFMLKANEVVAYHISHQGVSLP 407
Query: 405 YRG-QPQSNIDVSAFAHL-----------------------------PEGPVRSSAIVKI 434
+R +P ++ ++ AF L P V S V+
Sbjct: 408 FRSHEPPNDENLLAFQELAKNMGFDITFTPTQEPDYQYLLQTTSAGHPLEQVLHSQFVRS 467
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQ--LE 492
M+ A+ +G L L Y FTSPIRRY+DL+ H R P S Q LE
Sbjct: 468 MKTASYSTENKGHYG-LKLDYYTHFTSPIRRYIDLIVH-------RLLFNPLSIDQTHLE 519
Query: 493 GMASIVNMQTRIARRLSNT--SLRY--WIIEFLRRQPKERQYRALIL 535
+ + + R++ + N+ +L+ +I +FL+ QPK Y A I+
Sbjct: 520 IIVRACSTKERVSAKAENSFENLKKTRFINKFLQEQPK-TTYHAYII 565
>gi|18310278|ref|NP_562212.1| ribonuclease R [Clostridium perfringens str. 13]
gi|18144958|dbj|BAB81002.1| ribonuclease R [Clostridium perfringens str. 13]
Length = 751
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 41/367 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ +S+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDQELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
P I++ ++A A R++ E M++C E IA Y + + YR
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 407 ----------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRHG 449
G+ D+ +G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL H +K + + P A +L + + Q+ R
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYINKKIDPKRAKRLLSIVDSASKQSSEMER 601
Query: 508 LSNTSLR 514
++ + R
Sbjct: 602 IAQEAER 608
>gi|153939819|ref|YP_001389595.1| ribonuclease R [Clostridium botulinum F str. Langeland]
gi|384460674|ref|YP_005673269.1| ribonuclease R [Clostridium botulinum F str. 230613]
gi|152935715|gb|ABS41213.1| ribonuclease R [Clostridium botulinum F str. Langeland]
gi|295317691|gb|ADF98068.1| ribonuclease R [Clostridium botulinum F str. 230613]
Length = 725
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 173/378 (45%), Gaps = 51/378 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLSNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQTIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
P G GL Y FTSPIRRY DL+ H +K + G+ A +L
Sbjct: 532 RY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATRLTTEVE 588
Query: 497 IVNMQTRIARRLSNTSLR 514
+ Q+ R++ + R
Sbjct: 589 YASKQSSEMERVAQEAER 606
>gi|19703943|ref|NP_603505.1| exoribonuclease II [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19714117|gb|AAL94804.1| Exoribonuclease II [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 700
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 189/388 (48%), Gaps = 41/388 (10%)
Query: 177 KAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSL 236
K E + NRK+LT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++
Sbjct: 236 KEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETV 295
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVD 296
D +A RG SV+L PMFP++++ SL + E + + + G + Y V
Sbjct: 296 LDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVY 355
Query: 297 NSIIKPTYMLTYESATELLHLN---LEEEAEL-----KILSEAAALRLQWRLQQGAIDTA 348
S+IK + +TY+ +L + + E +++ ++L + LR++ + +G+ID
Sbjct: 356 KSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK-KFTRGSIDFE 414
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +KV ED + + ++D+ + +++ + MI E +A + LA YR
Sbjct: 415 LPE--LKVILDEDNNKVEKVLLKDRGE-GEKIIEDFMIAANETVAERIYWLELASIYRTH 471
Query: 409 PQSNID--------VSAFAH-LPE----GPVRSSAIVK--------------IMRA--AA 439
+ + + +S F + +P P + I++ I+RA A
Sbjct: 472 EKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQA 531
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ + H L Y FTSPIRRY DL+ H + + + PF L+ +A ++
Sbjct: 532 RYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHIS 591
Query: 500 MQTRIARRLSNTSLRYWIIEFLRRQPKE 527
R+A + + S+R ++E+++++ E
Sbjct: 592 KTERVAMKAEDESVRIKLVEYMQKRVGE 619
>gi|334365680|ref|ZP_08514630.1| ribonuclease R [Alistipes sp. HGB5]
gi|313158113|gb|EFR57518.1| ribonuclease R [Alistipes sp. HGB5]
Length = 743
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 168/384 (43%), Gaps = 48/384 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + +D +A + DDALS R++DG ++ +H+AD T Y+ P S D +A++R
Sbjct: 261 RRDFRQVTTFTVDPADAKDFDDALSVRRVRDGIWEIGVHIADVTHYVRPQSTIDDEAVER 320
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L T PM PE+L+ E SLR E + L+ + I E ++I
Sbjct: 321 GTSVYLVDRTVPMLPERLSNELCSLRPHETSLCFSAVFTLNENLDILEEWFGRTVIYSDR 380
Query: 305 MLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY A E++ + AE L + A ALR Q R + GAI E + K+ P
Sbjct: 381 RFTYAEAQEVIETGRGDYAEEILTLNRLAQALRRQ-RFKNGAISFDREEVKFKLDETGKP 439
Query: 363 EPIINLYVEDQADPAMRLVSEMMIL--------CGEAIATYGSFNNLALPYR---GQPQS 411
+ +Y ++Q + + +++ E M+L CG+ G + YR +
Sbjct: 440 ---LGVYFKEQKE-SNQMIEEFMLLANRRVAEFCGKRKTDKGRTVERPMVYRVHDSPSEE 495
Query: 412 NID-----VSAFAHLPEGPVRSSAIVKIMR-----------------------AAAIDFR 443
+D + F H+ + + AI K + A A
Sbjct: 496 KLDRFRQFILRFGHIFKA-TKGRAIAKELNKLFAQIKGTTEENAVSTMAVRSMAKAYYTT 554
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTR 503
+ H L P Y FTSPIRRY D++ H + L + LE + + +
Sbjct: 555 DNIGHYGLAFPYYTHFTSPIRRYPDMMVHRLLARYL-ADGKAADKAMLEDLCFRASEREV 613
Query: 504 IARRLSNTSLRYWIIEFLRRQPKE 527
IA S++Y ++EF++ + E
Sbjct: 614 IAAEAERASIKYKMVEFMKERIGE 637
>gi|365877396|ref|ZP_09416900.1| rnase r [Elizabethkingia anophelis Ag1]
gi|442587671|ref|ZP_21006486.1| ribonuclease R [Elizabethkingia anophelis R26]
gi|365754829|gb|EHM96764.1| rnase r [Elizabethkingia anophelis Ag1]
gi|442562525|gb|ELR79745.1| ribonuclease R [Elizabethkingia anophelis R26]
Length = 717
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 115/462 (24%), Positives = 200/462 (43%), Gaps = 74/462 (16%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R D+ + + ID +A + DDALS +L++G I+V +H+AD + Y++PG+L
Sbjct: 255 SEQEIAKRWDMRDILTFTIDPKDAKDFDDALSLRKLENGNIEVGVHIADVSYYVQPGTLL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R TS++L PM PE L+ E SLR E + L+ I +
Sbjct: 315 DQEAYDRATSIYLVDRVVPMLPEVLSNELCSLRPNEDKFTFSAVFELNDKAEIQKQWFGR 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I +YE A E + + A E+ +L A + + R++ GAI E R +
Sbjct: 375 TVINSDRRFSYEEAQERIETKEGDLAEEINLLDSLAKILRKDRMKHGAIAFDRAEVRFNL 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN---- 412
P I +Y + D A L+ E M+L + ++ + ++L + +P +N
Sbjct: 435 NEESQP---IGVYFKISKD-ANHLIEEFMLLANKKVSEF-----VSLTRKNEPTNNTFIY 485
Query: 413 ------------------------IDVSAFAHLPEGPVRSSAIVK-----------IMR- 436
+++S + E + A VK MR
Sbjct: 486 RIHDDPDPTKLASLRDFVHTFGYKMNISNRNKISESMNKLLAEVKGKGEENMIETLAMRS 545
Query: 437 -AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ + + H L Y FTSPIRRY D++AH ++ L G P A E
Sbjct: 546 MSKAVYSTENIGHYGLAFEYYSHFTSPIRRYPDVMAHRLLQHYLDGGKSPNVAEYEEKCK 605
Query: 496 SIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI-------------------LR 536
M+ R+A S+++ ++F+ + E ++ +I L
Sbjct: 606 HCSQME-RLAADAERDSIKFMQVKFMEKHVGE-TFKGVISGVTDWGIYVEIPENGAEGLI 663
Query: 537 FIKDRTAALLLVEVGLQAAAWVSVGA--QIGDEVEVKVEEAH 576
++D T + + A ++ G Q+GDEVE+KV +A+
Sbjct: 664 RLRDLTDDSYMFDAKNYAIVGMTHGNTYQLGDEVEIKVVKAN 705
>gi|260891253|ref|ZP_05902516.1| ribonuclease R [Leptotrichia hofstadii F0254]
gi|260859280|gb|EEX73780.1| ribonuclease R [Leptotrichia hofstadii F0254]
Length = 716
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 177/392 (45%), Gaps = 57/392 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ L NRKDL +L + ID +A +LDDA+ + +DG K+++ +AD + Y+ + D
Sbjct: 237 EELKNRKDLRNLDIITIDGSDAKDLDDAVYVEKTEDG-YKLFVSIADVSYYVRENTELDT 295
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A+KRG S++L PM P KL+ SL E TV + L G + S+
Sbjct: 296 EALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFTVEMDLDKKGKVVRNDFYKSV 355
Query: 300 IKPTYMLTYESATELLHLNLEEEAE-------------LKILSEAAALRLQWRLQQGAID 346
IK Y +TYE+ +L N E E LK + E + + + ++G+ID
Sbjct: 356 IKSKYRMTYENVNTILEKNEESEEYKGLYDKYRKIDEMLKNMLELSKIIRNNKKRRGSID 415
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ + +D + + ++ + + + A R++ + M++ E +A + + YR
Sbjct: 416 FELPEIKVVL---DDNKAVKDIVLRSRGE-AERIIEDFMVIANETVAEKFFWEEIPAIYR 471
Query: 407 --------------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKI 434
G+ Q+ I+ + LPEG + I++
Sbjct: 472 VHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERT--TGLPEGYLIHKLILRA 529
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH----YQVKACLRGESPPFSAGQ 490
M+ A K + H L Y+ FTSPIRRY DL+ H ++ + +
Sbjct: 530 MQRARY-ANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRMLGRSIEKFMNEKEKAKYGAN 588
Query: 491 LEGMASIVNMQTRIARRLSNTSLRYWIIEFLR 522
E +AS ++ R+A +L S++ +IE+++
Sbjct: 589 FEAIASSISKTERVADKLEEDSVKIKLIEYMQ 620
>gi|15618415|ref|NP_224700.1| ribonuclease [Chlamydophila pneumoniae CWL029]
gi|15836035|ref|NP_300559.1| ribonuclease [Chlamydophila pneumoniae J138]
gi|16752538|ref|NP_444800.1| VacB/Rnb family exoribonuclease [Chlamydophila pneumoniae AR39]
gi|33241856|ref|NP_876797.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183]
gi|7674336|sp|Q9Z848.1|RNR_CHLPN RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|4376791|gb|AAD18644.1| ribonuclease family [Chlamydophila pneumoniae CWL029]
gi|8163396|gb|AAF73648.1| exoribonuclease, VacB/Rnb family [Chlamydophila pneumoniae AR39]
gi|8978874|dbj|BAA98710.1| ribonuclease family [Chlamydophila pneumoniae J138]
gi|33236365|gb|AAP98454.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183]
Length = 676
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/407 (27%), Positives = 184/407 (45%), Gaps = 54/407 (13%)
Query: 169 KDISNFLQKAEDNLLN-RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S F QK +L+ RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 190 EEASLFSQKHITQVLHSRKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNYILGVHIADV 249
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S DK+A KR S + P PM P L+ SL+ AV+V +
Sbjct: 250 SHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKS 309
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW---RLQQGA 344
G +++Y + S+I+ Y +TY+ ++ KIL+E A L ++ R ++G
Sbjct: 310 GHLSDYQIFRSVIRSKYRMTYDEVDNIIEKKHSHPLS-KILNEMATLSKKFSDIREERGC 368
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I + + N ++P +I E+ + +L+ E M+ E +A + S ++LP
Sbjct: 369 IRFVLPSVTMSLDNLQEPVALI----ENHQTFSHKLIEEFMLKANEVVAYHISHQGVSLP 424
Query: 405 YRG-QPQSNIDVSAFAHL-----------------------------PEGPVRSSAIVKI 434
+R +P ++ ++ AF L P V S V+
Sbjct: 425 FRSHEPPNDENLLAFQELAKNMGFDITFTPTQEPDYQYLLQTTSAGHPLEQVLHSQFVRS 484
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQ--LE 492
M+ A+ +G L L Y FTSPIRRY+DL+ H R P S Q LE
Sbjct: 485 MKTASYSTENKGHYG-LKLDYYTHFTSPIRRYIDLIVH-------RLLFNPLSIDQTHLE 536
Query: 493 GMASIVNMQTRIARRLSNT--SLRY--WIIEFLRRQPKERQYRALIL 535
+ + + R++ + N+ +L+ +I +FL+ QPK Y A I+
Sbjct: 537 IIVRACSTKERVSAKAENSFENLKKTRFINKFLQEQPKT-TYHAYII 582
>gi|284040706|ref|YP_003390636.1| ribonuclease R [Spirosoma linguale DSM 74]
gi|283819999|gb|ADB41837.1| ribonuclease R [Spirosoma linguale DSM 74]
Length = 825
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 176/395 (44%), Gaps = 49/395 (12%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L R+D+ + + ID +A + DDALS L +G ++ IH+AD T Y+ PGS +++
Sbjct: 309 DLAKRRDMRDVTTFTIDPIDAKDFDDALSVQILDNGNFEIGIHIADVTHYVLPGSKLEEE 368
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVDNS 298
A KR TSV+L PM PEKL+ SLR E + +T S V SD I +
Sbjct: 369 AFKRATSVYLVDRVVPMLPEKLSNGLCSLRPNE--DKLTFSAVFEMTSDAKIVNEWFGRT 426
Query: 299 IIKPTYMLTYESATELLHLNLEEE-AELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
I YE A ++L+ N + EL++L+E A R + GAI+ T+E R ++
Sbjct: 427 AIHSNRRFAYEEAQDILNSNSGDYIEELRLLNELAYKLRDERFKNGAINFETVEVRFRL- 485
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY----------GSFNNLALPYRG 407
E+ P+ +Y + + D +L+ E M+L + +A + G N +
Sbjct: 486 -DENGVPLA-VYPKIRQD-TNKLIEEFMLLANKRVAEFVHSLSKRNKGGEENTMVYRVHE 542
Query: 408 QPQS-----------------NID-----------VSAFAHLPEGPVRSSAIVKIMRAAA 439
P N+D +++ PE + V+ M A
Sbjct: 543 SPAEDKLRSFSDFARKLGYKLNVDDEHLSNSMNRFMASIEGKPEANMLQQLAVRTMSKAR 602
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ + H L Y FTSPIRRY D++AH ++ L + P + E +
Sbjct: 603 YS-TEDLGHFGLAFKRYSHFTSPIRRYPDMMAHRLLQHYL-DKGKPADRDEYEEKCRHSS 660
Query: 500 MQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
+ ++A S++Y +EF+ R ++ + +I
Sbjct: 661 EREKMASDAERASIKYKQVEFMSRMAPDQVFEGVI 695
>gi|170756581|ref|YP_001779863.1| ribonuclease R [Clostridium botulinum B1 str. Okra]
gi|429244006|ref|ZP_19207488.1| ribonuclease R [Clostridium botulinum CFSAN001628]
gi|169121793|gb|ACA45629.1| ribonuclease R [Clostridium botulinum B1 str. Okra]
gi|428758926|gb|EKX81317.1| ribonuclease R [Clostridium botulinum CFSAN001628]
Length = 725
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 173/378 (45%), Gaps = 51/378 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLSNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQTIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
P G GL Y FTSPIRRY DL+ H +K + G+ A +L
Sbjct: 532 RY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATRLTTEVE 588
Query: 497 IVNMQTRIARRLSNTSLR 514
+ Q+ R++ + R
Sbjct: 589 YASKQSSEMERVAQEAER 606
>gi|164686797|ref|ZP_02210825.1| hypothetical protein CLOBAR_00392 [Clostridium bartlettii DSM
16795]
gi|164604187|gb|EDQ97652.1| ribonuclease R [Clostridium bartlettii DSM 16795]
Length = 732
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/434 (25%), Positives = 195/434 (44%), Gaps = 60/434 (13%)
Query: 120 KDSDRVLLAV------AQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISN 173
KD+D+V+ + ++P+GK ++ + I +P E+F HK +
Sbjct: 175 KDNDKVVCKITVWPTEGRKPEGKITEVIGQKGERGVEIDSIIRAHGLP--EEFPHKVLEE 232
Query: 174 ----FLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
+ E+ + R DL LK + ID ++A +LDDA+S L++G K+ +H+AD +
Sbjct: 233 ADRVIVPIPEEEIKRRMDLRDLKTFTIDGEDAKDLDDAVSIEVLENGNYKLGVHIADVSH 292
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y+ S DK+A+KR TSV+L PM P++L+ SL E ++V + +++DG
Sbjct: 293 YVREHSKLDKEAIKRATSVYLVDKVIPMLPKQLSNGVCSLNPFEDKLTLSVFMEINADGK 352
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQ 341
+ +Y + SII +TY +++L + E+ E + A + ++ R +
Sbjct: 353 VIKYDIAESIINSKARMTYTEVSDILEKDDEKLKSTFSNLVEEFHNAEDLARILMKRRER 412
Query: 342 QGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL 401
+G+ID E++I + N E I Y + + R++ E M++ E +A + +
Sbjct: 413 RGSIDFDFPESKI-ILNSEGKVADIKSY---ERRISNRMIEEFMLVTNETVAEHFFWLQT 468
Query: 402 ALPYR------GQPQSNID--VSAFAH-----------------------LPEGPVRSSA 430
YR + N+ ++ F + PE S+
Sbjct: 469 PFVYRIHEIPAAEKMENLSKFIATFGYSLKGDLEQIHPKEIQRVLKLIKGTPEEESISTI 528
Query: 431 IVKIMRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSA 488
+++ MR A P G GL Y FTSPIRRY DL H +K L G+ P +
Sbjct: 529 MLRSMRQARY---APQCVGHFGLAAQYYCHFTSPIRRYPDLQIHRIIKEQLNGKLTPKRS 585
Query: 489 GQLEGMASIVNMQT 502
QL + + Q+
Sbjct: 586 EQLANIVEYASNQS 599
>gi|422874165|ref|ZP_16920650.1| ribonuclease R [Clostridium perfringens F262]
gi|380304916|gb|EIA17200.1| ribonuclease R [Clostridium perfringens F262]
Length = 751
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 41/367 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ +S+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDQELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
P I++ ++A A R++ E M++C E IA Y + + YR
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 407 ----------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRHG 449
G+ D+ +G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL H +K + + P A +L + + Q+ R
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYINKKIDPKRAKRLLSIVDSASKQSSEMER 601
Query: 508 LSNTSLR 514
++ + R
Sbjct: 602 IAQEAER 608
>gi|168177565|ref|ZP_02612229.1| ribonuclease R [Clostridium botulinum NCTC 2916]
gi|226947453|ref|YP_002802544.1| ribonuclease R [Clostridium botulinum A2 str. Kyoto]
gi|182670398|gb|EDT82372.1| ribonuclease R [Clostridium botulinum NCTC 2916]
gi|226841831|gb|ACO84497.1| ribonuclease R [Clostridium botulinum A2 str. Kyoto]
Length = 725
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 173/378 (45%), Gaps = 51/378 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLSNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQTIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
P G GL Y FTSPIRRY DL+ H +K + G+ A +L
Sbjct: 532 RY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATRLTTEVE 588
Query: 497 IVNMQTRIARRLSNTSLR 514
+ Q+ R++ + R
Sbjct: 589 YASKQSSEMERVAQEAER 606
>gi|312135790|ref|YP_004003128.1| ribonuclease r [Caldicellulosiruptor owensensis OL]
gi|311775841|gb|ADQ05328.1| ribonuclease R [Caldicellulosiruptor owensensis OL]
Length = 716
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 177/369 (47%), Gaps = 55/369 (14%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+I N + +++L R DL ++ ID ++A + DDA+S +L +G + +H+AD
Sbjct: 235 KEIENIPDEVTQEDLEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADV 294
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y++P + DK+A +RGTSV+L PM P KL+ SL + +T SV++ D
Sbjct: 295 SYYVKPNTHLDKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEID 352
Query: 288 --GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAAL 334
G++ ++ + S+I+ +TY + T++L EE+ E L+++ E A +
Sbjct: 353 KQGNVVKHDIFESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALI 409
Query: 335 RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT 394
+ R+++GA+D ET++ + P +I + + +++ E M++C E +A
Sbjct: 410 LREKRMKRGALDFDFDETKVILDKNGKPVDVIRY----ELTISNKIIEEFMLICNETVAN 465
Query: 395 YGSFNNLALPYRGQPQSNID-VSAFAHL------------------------------PE 423
+ + N+ YR + +I+ + FA PE
Sbjct: 466 HFYWLNVPFLYRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKIHPKALQAVLEQSRGTPE 525
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
V + ++ ++ A + + H L Y FTSPIRRY DL+ H +K L+G+
Sbjct: 526 ERVIHTLCLRSLKKARY-CEENLGHFGLSTDYYCHFTSPIRRYPDLVIHRIMKDVLKGKM 584
Query: 484 PPFSAGQLE 492
A +L+
Sbjct: 585 TEKKAQRLK 593
>gi|304316667|ref|YP_003851812.1| ribonuclease R [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778169|gb|ADL68728.1| ribonuclease R [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 719
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 154/337 (45%), Gaps = 43/337 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL HL + ID ++A +LDDA++ +L G +Y+ +AD + Y++ GS DK+A+ R
Sbjct: 244 RTDLRHLNIVTIDGEDAKDLDDAVAVEKLDSGDYILYVSIADVSHYVKEGSELDKEALNR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P +L+ SL E +TV + + +G++ ++ + S+I+
Sbjct: 304 GCSVYFIDRVIPMLPHRLSNGICSLNPSEDRLTLTVKMKIDKNGNVVDHDIFESVIRSKE 363
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + ++L N +E E + + A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKILEGNDDELKERYKDLVGDFNNMRDLAKILLERRKRRGSVDFDFEEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I+ + + + A R++ E M++ E +A + + N+ YR +++
Sbjct: 424 DENGKPTDIVKV----ERNIAHRIIEEFMLVANETVAEHMHWINVPFVYRVHEHPDMEKL 479
Query: 415 --VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR------------------------- 447
+ F H ++ +I A + K VR
Sbjct: 480 MAFNKFIHNLGYHIKGIGGDEIHPKALQELIKQVRGKNEQRIVETLLLRSLKRARYSPED 539
Query: 448 --HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 540 LGHYALATQYYTHFTSPIRRYPDLIIHRIIKENIHGK 576
>gi|110800238|ref|YP_695945.1| ribonuclease R [Clostridium perfringens ATCC 13124]
gi|110674885|gb|ABG83872.1| ribonuclease R [Clostridium perfringens ATCC 13124]
Length = 751
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 41/367 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ +S+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDKELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
P I++ ++A A R++ E M++C E IA Y + + YR
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 407 ----------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRHG 449
G+ D+ +G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL H +K + + P A +L + + Q+ R
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYINKKIDPKRAKRLLSIVDSASKQSSEMER 601
Query: 508 LSNTSLR 514
++ + R
Sbjct: 602 IAQEAER 608
>gi|424864585|ref|ZP_18288488.1| ribonuclease R [SAR86 cluster bacterium SAR86B]
gi|400759331|gb|EJP73513.1| ribonuclease R [SAR86 cluster bacterium SAR86B]
Length = 492
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 177/394 (44%), Gaps = 48/394 (12%)
Query: 172 SNFLQKAEDNLLNRK-----DLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
SN L+K ++L +K DLT+L ID +A + DDAL + +G + +Y+ +AD
Sbjct: 22 SNKLKKEVESLTEKKFSHYQDLTNLAFVTIDGADAKDFDDALYCEKSDEGFL-LYVAIAD 80
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
Y+E S+ DK+A RGTS++ P PM EK++ + SL + N ++ +
Sbjct: 81 VAGYVEQNSILDKEAFIRGTSIYFPKKVVPMLHEKISNDYCSLLPHKNRNVLSAKIYTDK 140
Query: 287 DGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKI------LSEAAALRLQWRL 340
DG + Y ++I LTY A E++H N ++ + I LS+ A L+L+ R
Sbjct: 141 DGEVISYQFFEAVINSKQRLTYNEAEEIIHHNNHQDLDQSIKDNISNLSKLAKLQLKKRA 200
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
Q+GA++ + E + + + E ++ + + + +LV E M+L A + N
Sbjct: 201 QRGALEINSQEP---ILDINENEKVLKVTTPTRK-HSHKLVEECMLLANICAADFLKNNY 256
Query: 401 LALPYRGQPQ------------------------SNIDV------SAFAHLPEGPVRSSA 430
YR + S +DV A H E +
Sbjct: 257 GFGLYRIHEEPDLARLESVKNFFKLNGIKHFNKCSELDVINKCLNHATNHDLENVMNIFV 316
Query: 431 IVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQ 490
+ + RA K V H L L Y FTSPIRRY DL+ H +K + ++ F + Q
Sbjct: 317 LQNLKRAEYS--TKEVGHFGLQLERYTHFTSPIRRYPDLIVHRMIKNIINEQNIKFDSMQ 374
Query: 491 LEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQ 524
L+ ++ + A ++S ++Y I L+ +
Sbjct: 375 LDQDCEKLSFLEKRAEKVSRQVVQYLICCHLKSK 408
>gi|423226569|ref|ZP_17213034.1| ribonuclease R [Bacteroides cellulosilyticus CL02T12C19]
gi|392629048|gb|EIY23064.1| ribonuclease R [Bacteroides cellulosilyticus CL02T12C19]
Length = 714
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 176/384 (45%), Gaps = 48/384 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++ + R+D ++ + ID +A + DDALS +L+DG +V +H+AD T Y+ GS
Sbjct: 252 SDEEIAKREDFRNVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVTEGSTI 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + V +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFNINEKGDVKDSRVVH 371
Query: 298 SIIKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++IK TYE A +++ + +EE L + + A ALR Q R GAI+ E +
Sbjct: 372 TVIKSDRRFTYEEAQQIIETKEGDFKEEI-LMLDTIAKALR-QKRFVAGAINFDRYEVKF 429
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR--- 406
++ P I++Y + D A +LV E M+L +A G N A PYR
Sbjct: 430 EIDEKGKP---ISVYFKVSKD-ANKLVEEFMLLANRTVAEKIGRVPKNKKAKVFPYRIHD 485
Query: 407 -GQPQ--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRA 437
P+ + DVS + HL E + + ++ M+
Sbjct: 486 LPDPEKLDNLAQFIARFGYKIRTGGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQK 545
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASI 497
A + H L Y FTSPIRR+ D++ H + L G S + E +
Sbjct: 546 ARYSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLLTKYLNG-GRSVSETKYEDLCDH 603
Query: 498 VNMQTRIARRLSNTSLRYWIIEFL 521
+ +IA S++Y +EF+
Sbjct: 604 SSNMEQIAANAERASIKYKQVEFM 627
>gi|326509537|dbj|BAJ91685.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 319
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 91/141 (64%), Gaps = 4/141 (2%)
Query: 63 GSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDS 122
G+ + LVDSV+QEL + R+ + EL + K+E + +QKGLLLEF KDS
Sbjct: 42 GATAACRGRLVDSVLQELRSRRRVRVSARIGLQGTKELSDSKIEKKPIQKGLLLEFHKDS 101
Query: 123 DRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNL 182
+R LLAV +RPDGKKNW+V DQNG SIKPQQVT+VVPG FD I+ FL+KA+D L
Sbjct: 102 ERSLLAVVERPDGKKNWVVTDQNGILSSIKPQQVTYVVPGTMDFDCSRIAEFLEKAQDLL 161
Query: 183 LNRKDLTHLKVYAIDVDEADE 203
D + L+ +++ E D+
Sbjct: 162 ----DPSILECAWLELSEKDK 178
>gi|170761827|ref|YP_001785563.1| ribonuclease R [Clostridium botulinum A3 str. Loch Maree]
gi|169408816|gb|ACA57227.1| ribonuclease R [Clostridium botulinum A3 str. Loch Maree]
Length = 725
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 174/379 (45%), Gaps = 53/379 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLSNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKSGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E +I + E +PI I Y + A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIIL--DEKGKPIEIKPY---ERAIANRIIEEFMLVCNETIAEHMFWSNLPFVYRI 470
Query: 408 QPQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRA 437
+ + + F H E V S+ +++ ++
Sbjct: 471 HEDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQTIIEKVKGEKEETVVSTLLLRSLKQ 530
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
A P G GL Y FTSPIRRY DL+ H +K + G+ A +L
Sbjct: 531 ARY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATRLTTEV 587
Query: 496 SIVNMQTRIARRLSNTSLR 514
+ Q+ R++ + R
Sbjct: 588 EYASKQSSEMERVAQEAER 606
>gi|399022619|ref|ZP_10724691.1| ribonuclease R [Chryseobacterium sp. CF314]
gi|398084455|gb|EJL75140.1| ribonuclease R [Chryseobacterium sp. CF314]
Length = 716
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 172/387 (44%), Gaps = 42/387 (10%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ PG+L
Sbjct: 254 TDEEVAKRWDMREITTFTIDPKDAKDFDDALSIRKLENGNWEIGVHIADVSHYVIPGTLL 313
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R TSV+L PM PE L+ + SLR E + L+ + + +
Sbjct: 314 DDEAYDRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFELNDNAEVQKQWFGR 373
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE A E + + A E+ +L A + R+++GAI E R +
Sbjct: 374 TVIHSDRRFTYEEAQERIETKEGDYAEEILVLDRLAKIMRAERIRKGAITFDRSEVRFSL 433
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYRGQPQ 410
E+ EP + +Y + D + L+ E M+L ++ + G +N YR
Sbjct: 434 --DENNEP-VGVYFKISKD-SNHLIEEFMLLANRKVSEFVSLSRRGEISNNTFIYRVHDD 489
Query: 411 SNID--------VSAFA-------------------HLPEGPVRSSAIVKI-MR--AAAI 440
+ VS F H +G + I + MR + A+
Sbjct: 490 PDPAKLEALRDFVSTFGYKMDLANTKKVAESLNRLLHDVKGKGEENMIETLAMRSMSKAV 549
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
P+ H LG Y FTSPIRRY DL+AH ++ L G P + ++E A +
Sbjct: 550 YSTDPIGHYGLGFEYYSHFTSPIRRYPDLIAHRLLQHYLDGGKSP-NREEIEEKAKHCSS 608
Query: 501 QTRIARRLSNTSLRYWIIEFLRRQPKE 527
R+A S+++ ++F+ + E
Sbjct: 609 MERLAADAERDSIKFMQVKFMEKHLGE 635
>gi|375091522|ref|ZP_09737812.1| ribonuclease R [Helcococcus kunzii ATCC 51366]
gi|374563385|gb|EHR34704.1| ribonuclease R [Helcococcus kunzii ATCC 51366]
Length = 641
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 176/410 (42%), Gaps = 59/410 (14%)
Query: 120 KDSDRVLLAV------AQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISN 173
K+ D+V++ + + P G+ ++ + N I T+ +P +D + +
Sbjct: 108 KNHDKVVVEILFFDRKDKNPTGRVVEVLGNTNDTGIQILAIAKTYELPDEFSYDTLNYAR 167
Query: 174 FLQKAED--NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
L D + NR+D L ID +A + DDA+S + D I +Y+H+AD Y+
Sbjct: 168 SLPDVPDKKDFANREDFRDLFTVTIDGADAKDFDDAISIEKKDDKYI-LYVHIADVAHYV 226
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
S + DA +RG SV+L PM PE+L+ SL VTV +V G+I
Sbjct: 227 TENSAINDDAYERGNSVYLLDRVIPMLPEELSNSLCSLNPNVDRLTVTVKMVFDKKGNIN 286
Query: 292 EYSVDNSIIKPTYMLTYESATELLH--LNLEEEAE----LKILSEAAALRLQWRLQQGAI 345
+Y SII+ Y L YE+ ++LL N+ ++ E L ++E A+ + R +GA+
Sbjct: 287 DYYFYESIIRSNYRLVYENVSDLLEGKENIYKDDELIESLSNMNELHAILEEKRKIKGAL 346
Query: 346 DTATLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA 402
D E++I K P D + ED+ A +L+ M++ E + G F N+
Sbjct: 347 DFDFKESKIILDKYGTPIDIK-------EDERRVANKLIESFMVVTNEVVG--GHFANMD 397
Query: 403 LPY---------------------------RGQPQSNIDVSAFAHLPEGPVRSSAIVKI- 434
+P+ +GQ D EG S I I
Sbjct: 398 VPFIYRVHEAPSEDKVEEFRSVIAKFGLQIKGQQLYPKDFQKILEDVEGTTLSFLISNIM 457
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
MR A R+P H L Y FT+PIRRY DL+ H +K L
Sbjct: 458 LRTMRKAEYK-REPNIHFGLATENYSHFTAPIRRYSDLVVHRILKGSLHN 506
>gi|387816459|ref|YP_005676803.1| 3'-to-5' exoribonuclease RNase R [Clostridium botulinum H04402 065]
gi|322804500|emb|CBZ02050.1| 3'-to-5' exoribonuclease RNase R [Clostridium botulinum H04402 065]
Length = 725
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 173/378 (45%), Gaps = 51/378 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLPNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHKVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-VANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQSIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
P G GL Y FTSPIRRY DL+ H +K + G+ A +L
Sbjct: 532 RY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATRLTTEVE 588
Query: 497 IVNMQTRIARRLSNTSLR 514
+ Q+ R++ + R
Sbjct: 589 YASKQSSEMERVAQEAER 606
>gi|402846031|ref|ZP_10894350.1| ribonuclease R [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402268583|gb|EJU17950.1| ribonuclease R [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 755
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 166/390 (42%), Gaps = 51/390 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ L R+D + ID +A + DDALS L +G +V +H+AD + Y++PGS+ D
Sbjct: 268 EEELAQREDFRGVLTCTIDPRDAKDFDDALSFRSLPEGGYEVGVHIADVSHYVQPGSIID 327
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A KR TSV+L T PM PE+L+ SLR E A + L + + + +
Sbjct: 328 DEAYKRATSVYLVDRTIPMLPERLSNFLCSLRPDEDKYAYSCIFSLDEEAQLRSARIART 387
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW-RLQQGAIDTATLETRIKVA 357
+I+ TYE A E++ + AE + A +L+ R + G+I E R ++
Sbjct: 388 VIRSQRRFTYEEAQEIIETGKGDHAEAILTLHRLAQKLRARRFEVGSIAFDRPEVRFELD 447
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT---------------YGSFNNLA 402
P +++Y++ ++ PA +L+ E M+L +A G A
Sbjct: 448 EEGKP---LSVYIK-ESKPAHQLIEEFMLLANRTVAERIAEPARKDISPALRLGRGGKPA 503
Query: 403 LPYRGQPQSNID--------VSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KP-------- 445
YR + + V F + + SS I K + A D + KP
Sbjct: 504 FVYRIHEAPDEEKLRSLADYVRRFGYKLKVEGGSSVIAKSLNALLADIKGKPEEDMLTML 563
Query: 446 --------------VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQL 491
+ H LG Y FTSPIRRY DL+ H + L P A L
Sbjct: 564 AIRSMAKARYTTTHIGHYGLGFDSYTHFTSPIRRYPDLMVHRLLTRYLIEGKPSADAAAL 623
Query: 492 EGMASIVNMQTRIARRLSNTSLRYWIIEFL 521
E + +A +S++Y +E++
Sbjct: 624 EDQCDHASEMESVAANAERSSIKYKQVEYM 653
>gi|319647804|ref|ZP_08002022.1| rnr protein [Bacillus sp. BT1B_CT2]
gi|317390145|gb|EFV70954.1| rnr protein [Bacillus sp. BT1B_CT2]
Length = 576
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 162/345 (46%), Gaps = 54/345 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ GS D
Sbjct: 51 EKDLEGRRDLRDQTIVTIDGADAKDLDDAVTVTKLKNGHYKLGVHIADVSHYVTEGSPID 110
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ ++++ G + E+ + S
Sbjct: 111 QEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTMSCEMLINPQGQVVEHEIFQS 170
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEA-----------AALRLQWRLQQGAIDT 347
+IK T +TY ++L ++++ ELK EA AA+ R+++GA+D
Sbjct: 171 VIKTTERMTYSDVNKIL---VDDDEELKQKYEALVPMFKDMEDLAAILRGKRMERGAVDF 227
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V D E V + A +L+ E M++ E +A + + N+ YR
Sbjct: 228 DFKEAKVLV----DEEGKAKDVVLRERSTAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 283
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ + V+ F ++ PE V S+ +++ M+
Sbjct: 284 HEDPDQEKLQRFLEFVTTFGYVVKGTAGSIHPKALQSVLEEVRDRPEEAVISTVMLRSMK 343
Query: 437 AAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 344 QAKYD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 385
>gi|296327512|ref|ZP_06870058.1| ribonuclease II [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|296155338|gb|EFG96109.1| ribonuclease II [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 700
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 189/388 (48%), Gaps = 41/388 (10%)
Query: 177 KAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSL 236
K E + NRK+LT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++
Sbjct: 236 KEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETV 295
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVD 296
D +A RG SV+L PMFP++++ SL + E + + + G + Y V
Sbjct: 296 LDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVY 355
Query: 297 NSIIKPTYMLTYESATELLHLN---LEEEAEL-----KILSEAAALRLQWRLQQGAIDTA 348
S+IK + +TY+ +L + + E +++ ++L + LR++ + +G+ID
Sbjct: 356 KSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK-KFTRGSIDFE 414
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +KV ED + + ++D+ + +++ + MI E +A + LA YR
Sbjct: 415 LPE--LKVILDEDNNKVEKVLLKDRGE-GEKIIEDFMIAANETVAERIYWLELASIYRTH 471
Query: 409 PQSNID--------VSAFAH-LPE----GPVRSSAIVK--------------IMRA--AA 439
+ + + +S F + +P P + I++ I+RA A
Sbjct: 472 EKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQA 531
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ + H L Y FTSPIRRY DL+ H + + + PF L+ +A ++
Sbjct: 532 RYTVEDIGHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHIS 591
Query: 500 MQTRIARRLSNTSLRYWIIEFLRRQPKE 527
R+A + + S+R ++E+++++ E
Sbjct: 592 KTERVAMKAEDESVRIKLVEYMQKRVGE 619
>gi|148378235|ref|YP_001252776.1| ribonuclease R [Clostridium botulinum A str. ATCC 3502]
gi|153931432|ref|YP_001382636.1| ribonuclease R [Clostridium botulinum A str. ATCC 19397]
gi|153934693|ref|YP_001386188.1| ribonuclease R [Clostridium botulinum A str. Hall]
gi|148287719|emb|CAL81784.1| ribonuclease R [Clostridium botulinum A str. ATCC 3502]
gi|152927476|gb|ABS32976.1| ribonuclease R [Clostridium botulinum A str. ATCC 19397]
gi|152930607|gb|ABS36106.1| ribonuclease R [Clostridium botulinum A str. Hall]
Length = 725
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 173/378 (45%), Gaps = 51/378 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLPNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQSIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
P G GL Y FTSPIRRY DL+ H +K + G+ A +L
Sbjct: 532 RY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATKLTTEVE 588
Query: 497 IVNMQTRIARRLSNTSLR 514
+ Q+ R++ + R
Sbjct: 589 YASKQSSEMERVAQEAER 606
>gi|403235917|ref|ZP_10914503.1| ribonuclease R [Bacillus sp. 10403023]
Length = 780
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 160/340 (47%), Gaps = 54/340 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DL + + ID +A +LDDA++ +L++G K+ +H+AD T Y+ GS DK+A
Sbjct: 249 NRRDLRNEVIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVTHYVTEGSPIDKEASD 308
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIK 301
RGTS++L PM P +L+ SL + +T+S + D G + ++ + S+IK
Sbjct: 309 RGTSIYLVDRVIPMIPHRLSNGICSLNPK--VDRLTLSCEMEVDQNGVVVKHDIFQSVIK 366
Query: 302 PTYMLTYESATELLHLNLEEEAELKI-----------LSEAAALRLQWRLQQGAIDTATL 350
T +TY +L ++++ EL+ + + AA+ + R+++GAID
Sbjct: 367 TTERMTYSDVNSIL---VDKDEELRKRYEPLVPMFEDMEQLAAILREKRMKRGAIDFDFK 423
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V P I V + RL+ E M+L E +A + + N+ YR
Sbjct: 424 EAKVLVNEEGAPYDI----VLRERSVGERLIEEFMLLANETVAEHFHWMNVPFIYRIHED 479
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + ++ F ++ PE V S+ +++ M+ A
Sbjct: 480 PNEEKLRRFLEFITNFGYIVRGSGNSIHPRALQEVIEAVQGKPEEMVVSTVMLRSMKQAK 539
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D + V H L Y FTSPIRRY DL+ H ++ L
Sbjct: 540 YD-PESVGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYL 578
>gi|340358012|ref|ZP_08680611.1| ribonuclease R [Sporosarcina newyorkensis 2681]
gi|339615633|gb|EGQ20305.1| ribonuclease R [Sporosarcina newyorkensis 2681]
Length = 797
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 162/342 (47%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E++ RKDL + ID +A +LDDA++ ++ DG ++++H++D + Y+ S D
Sbjct: 244 EEDFFKRKDLRNDMTITIDGADAKDLDDAIALVKEDDGSYRLFVHISDVSYYVTENSPMD 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A RGTSV+L PM P +L+ SL GE +T + + +G + E+ + S
Sbjct: 304 AEAADRGTSVYLTDRVIPMLPHRLSNGICSLNPGEDRLTLTCEMKVDQNGKVVEHEIYPS 363
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+I Y +TY+ E++ EE ++ L +++ AA+ Q R +GAID
Sbjct: 364 VINSNYRMTYKDVYEIIDNQDEELSKKYEEIVPMLNDMAKLAAILRQKRQDRGAIDFDFK 423
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----R 406
E++I V E+ P + VE + R++ E M++ E +A + F+ L +P+
Sbjct: 424 ESKILV--DEEGWPTDVVIVERTV--SERMIEEFMLIANETVAEH--FHWLQVPFLYRIH 477
Query: 407 GQPQ-----------SNID------------------VSAFAHLPEGPVRSSAIVKIMRA 437
P+ +N V + LPE V S+ +++ M+
Sbjct: 478 EDPKEEKLQRFFEFLTNFGIVVKGTGNQVHPRALQEIVESIEGLPEESVISTMLLRSMQQ 537
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A F + + H L Y FT+PIRRY DL+ H ++ L
Sbjct: 538 AKY-FEESLGHFGLSTDYYTHFTAPIRRYPDLIVHRLIRTYL 578
>gi|337288698|ref|YP_004628170.1| ribonuclease R [Thermodesulfobacterium sp. OPB45]
gi|334902436|gb|AEH23242.1| ribonuclease R [Thermodesulfobacterium geofontis OPF15]
Length = 705
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 166/366 (45%), Gaps = 60/366 (16%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+N R DLT + + ID + A + DDA+ R ++G K+++ +AD Y+ + D+
Sbjct: 245 ENKKGRVDLTEIPLVTIDGENARDFDDAVCVKRTKNG-YKLWVAIADVAHYVLKNTFLDR 303
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A RGTSV+ P PMFPEKL+ SL A+ V + DG I + + ++
Sbjct: 304 EAYSRGTSVYFPNMVVPMFPEKLSNHLCSLNPKVERLAMVVEIDFTKDGEIIKQNFYEAV 363
Query: 300 IKPTYMLTYESATELL---HLNLEEEAE-----LKILSEAAALRLQWRLQQGAIDTATLE 351
IK LTY E++ + + ++ E L++ +E A + + RL++G++D E
Sbjct: 364 IKSHARLTYTEVKEMIVDKNKKVIQKYETLYPMLEVAAELALILREKRLKRGSLDFDLPE 423
Query: 352 TRIKVANPEDPEPIINL------YVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
PE IIN+ V+ + + A L+ + MI EA+A Y + Y
Sbjct: 424 ----------PEVIINMKGEIENIVKRERNLAHMLIEDFMIAANEAVAEYLTKRGYPFLY 473
Query: 406 R--GQPQSN-------------ID---------------VSAFAHLPEGPVRSSAIVKIM 435
R +P N ID ++ F+ P + + +++ +
Sbjct: 474 RIHEKPDPNKFKQLSEIFLAYGIDINHPEELTPHFFQELITKFSGKPYAYLFNFLLLRSL 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEG 493
+ A P G GL Y FTSPIRRY DL+ H +K LR + PP+ +LE
Sbjct: 534 KQARYS---PENVGHFGLASTCYCHFTSPIRRYPDLVVHRTLKRALRNKKPPYKEEELEV 590
Query: 494 MASIVN 499
M ++
Sbjct: 591 MGKFLS 596
>gi|52081942|ref|YP_080733.1| ribonuclease R [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|404490822|ref|YP_006714928.1| ribonuclease R [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423683941|ref|ZP_17658780.1| ribonuclease R [Bacillus licheniformis WX-02]
gi|52005153|gb|AAU25095.1| ribonuclease R [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52349828|gb|AAU42462.1| ribonuclease R [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|383440715|gb|EID48490.1| ribonuclease R [Bacillus licheniformis WX-02]
Length = 767
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 162/345 (46%), Gaps = 54/345 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ GS D
Sbjct: 242 EKDLEGRRDLRDQTIVTIDGADAKDLDDAVTVTKLKNGHYKLGVHIADVSHYVTEGSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ ++++ G + E+ + S
Sbjct: 302 QEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTMSCEMLINPQGQVVEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEA-----------AALRLQWRLQQGAIDT 347
+IK T +TY ++L ++++ ELK EA AA+ R+++GA+D
Sbjct: 362 VIKTTERMTYSDVNKIL---VDDDEELKQKYEALVPMFKDMEDLAAILRGKRMERGAVDF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V D E V + A +L+ E M++ E +A + + N+ YR
Sbjct: 419 DFKEAKVLV----DEEGKAKDVVLRERSTAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 474
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ + V+ F ++ PE V S+ +++ M+
Sbjct: 475 HEDPDQEKLQRFLEFVTTFGYVVKGTAGSIHPKALQSVLEEVRDRPEEAVISTVMLRSMK 534
Query: 437 AAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 535 QAKYD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|297618003|ref|YP_003703162.1| ribonuclease R [Syntrophothermus lipocalidus DSM 12680]
gi|297145840|gb|ADI02597.1| ribonuclease R [Syntrophothermus lipocalidus DSM 12680]
Length = 703
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 157/337 (46%), Gaps = 53/337 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED L R+DL K+ ID ++A +LDDA+S R Q G ++ +H+AD + Y+ G +
Sbjct: 238 GEDELAQRRDLREWKMVTIDGEDAKDLDDAVSIERTQGG-YRLGVHIADVSHYVSEGGVL 296
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P +L+ SL GE AV+V + + G + Y +
Sbjct: 297 DKEAFRRGTSVYLTDRVLPMLPPELSNGICSLNAGEDRLAVSVVMDIDEKGEVRNYEIFK 356
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK-----------ILSEAAALRLQWRLQQGAID 346
S+I+ +TY ++L LE + +L+ ++ E + + R+ +GA+D
Sbjct: 357 SVIRVKERMTYTDVNKIL---LENDPDLRTRYSELVPDFEVMGELCRILRKRRMDKGALD 413
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP-- 404
ET+I V E P+ +E Q A ++ E MI E +A + +L +P
Sbjct: 414 FDFPETKIIVD--EKGWPVAVARMERQL--AEMIIEEFMIKANEVVAEH--LYSLKVPTL 467
Query: 405 YRGQPQSNID--------VSAFAH---------------------LPEGPVRSSAIVKIM 435
YR + + D + F H PE S+ I++ M
Sbjct: 468 YRVHERPDEDSIRELNRVLGVFGHRVAEREVQPKHFQEILEKIKDRPEERTVSTIILRSM 527
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
R A +P+ H L Y FTSPIRRY DL+ H
Sbjct: 528 RHARY-APQPLGHFGLASAYYTHFTSPIRRYPDLVVH 563
>gi|441495903|ref|ZP_20978141.1| 3'-to-5' exoribonuclease RNase R [Fulvivirga imtechensis AK7]
gi|441440438|gb|ELR73703.1| 3'-to-5' exoribonuclease RNase R [Fulvivirga imtechensis AK7]
Length = 719
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 180/404 (44%), Gaps = 76/404 (18%)
Query: 171 ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
IS + K E + RKD + + ID ++A + DDALS L++G ++ +H+AD T Y
Sbjct: 249 ISEKITKQE--IEKRKDFRDVLTFTIDPEDAKDFDDALSFKNLENGNFEIGVHIADVTHY 306
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--G 288
++PG++ +++A R TSV+L T PM PE+L+ SLR E + +T + V D
Sbjct: 307 VQPGTILEQEAFDRATSVYLVDRTVPMLPERLSNGLCSLRPKE--DKLTFAAVFEMDEEA 364
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDT 347
++ + +II TYE A + + + A EL+ L++ A + R +GA++
Sbjct: 365 NVIKEWFGRTIIHSDRRFTYEEAQGGIETGVGDYAKELQKLNDLAKKLRKERFNRGAVNF 424
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------------ 395
T E + K+ P +I +D A +L+ E M+L + +AT+
Sbjct: 425 ETTEVKFKLDEKGKPLGVIPKVRKD----AHKLIEEFMLLANKKVATFVFGMKKGEDKNT 480
Query: 396 --------------GSF----------------------NNLALPYRGQPQSNIDVSAFA 419
G+F N L G+P+ N+
Sbjct: 481 FVYRTHDFPDPEKVGTFAQFAKRFGHELKTDQGAISQSLNKLMTSIEGKPEENV------ 534
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
L + +RS A K A H L P Y FTSPIRRY D++ H ++ L
Sbjct: 535 -LQQLAIRSMAKAKYTTEA-------TGHFGLAFPHYTHFTSPIRRYPDMMVHRLLQHYL 586
Query: 480 -RGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLR 522
+G+S + + + + S + + + A S++Y +EF++
Sbjct: 587 SKGKSADKNDYEEKCIHS--SEREKRAADAERASIKYKQVEFMQ 628
>gi|433654805|ref|YP_007298513.1| ribonuclease R [Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433292994|gb|AGB18816.1| ribonuclease R [Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 718
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 42/336 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL HL + ID ++A +LDDA++ +L G +Y+ +AD + Y++ GS DK+A+ R
Sbjct: 244 RTDLRHLNIVTIDGEDAKDLDDAVAVEKLDSGDYILYVSIADVSHYVKEGSELDKEALNR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P +L+ SL E +TV + + +G++ ++ + S+I+
Sbjct: 304 GCSVYFIDRVIPMLPHRLSNGICSLNPSEDRLTLTVKMKIDKNGNVVDHDIFESVIRSKE 363
Query: 305 MLTYESATELLHLNLEEEAELKIL-------SEAAALRLQWRLQQGAIDTATLETRIKVA 357
+TY + ++L N E + K L + A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKILEGNDELKERYKDLVGDFNNMRDLANILLERRKRRGSVDFDFEEAKVIVD 423
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID--- 414
P I+ + + + A R++ E M++ E +A + + N+ YR +++
Sbjct: 424 ENGKPTDIVKV----ERNIAHRIIEEFMLVANETVAEHMHWINVPFVYRVHEHPDMEKLM 479
Query: 415 -VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR-------------------------- 447
+ F H ++ +I A + K VR
Sbjct: 480 AFNKFIHNLGYHIKGIGGDEIHPKALQELIKQVRGKNEQRIVETLLLRSLKRARYSPEDL 539
Query: 448 -HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
H L Y FTSPIRRY DL+ H +K + G+
Sbjct: 540 GHYALATQYYTHFTSPIRRYPDLIIHRIIKENIHGK 575
>gi|381157571|ref|ZP_09866805.1| exoribonuclease R [Thiorhodovibrio sp. 970]
gi|380881434|gb|EIC23524.1| exoribonuclease R [Thiorhodovibrio sp. 970]
Length = 616
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 183/394 (46%), Gaps = 49/394 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT L +AID + DDA+S DG ++++HVAD + PGS D +A
Sbjct: 238 SRLDLTGLPAFAIDDAGNQDPDDAISL----DGE-RIWVHVADVAALVAPGSELDLEARA 292
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP M PE A + + EV A++ +G +A+ + S ++
Sbjct: 293 RGATLYLPEGAVTMLPEA-ATAALGVGLQEVSPALSFGFRCTEEGELADIEIHPSWVR-V 350
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGA-IDTATLETRIKVANPEDP 362
L+Y A + LEE+ ++ A R + Q A ID + R++
Sbjct: 351 ERLSYAEAEQ----RLEEQPFASLMQIAERFRARRAANQSARIDLPEVSVRLRDGQVAI- 405
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
EPI L D LV++ M++ GEA A + LA+P+ QP P
Sbjct: 406 EPIERLAARD-------LVTDAMLMAGEAAARFCQDRALAIPFAVQP------------P 446
Query: 423 EGPVRSSAIVKIMRAAAIDFR------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+ + M A F+ +P HG LGLP Y + TSP+RRY DLL H Q++
Sbjct: 447 PERIEQPETLSGMYAYRRCFKPTRMAVEPGAHGGLGLPLYARATSPLRRYADLLVHQQLR 506
Query: 477 ACLRGESPPFSAGQLEGMAS---IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRAL 533
A LRGE P A ++ AS + R A RLSN ++W + +L+ P R R +
Sbjct: 507 AHLRGE-PVLDASEVAARASQAEVAGAAVRKAERLSN---QHWKLVYLQANPGWRG-RGV 561
Query: 534 ILRFIKDRTAAL---LLVEVGLQAAAWVSVGAQI 564
++ + RT L L E L+A + +S+ A +
Sbjct: 562 VVAQEERRTVVLIPELAFETRLRAKSELSLDADV 595
>gi|168182158|ref|ZP_02616822.1| ribonuclease R [Clostridium botulinum Bf]
gi|237793551|ref|YP_002861103.1| ribonuclease R [Clostridium botulinum Ba4 str. 657]
gi|182674694|gb|EDT86655.1| ribonuclease R [Clostridium botulinum Bf]
gi|229263406|gb|ACQ54439.1| ribonuclease R [Clostridium botulinum Ba4 str. 657]
Length = 725
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 173/378 (45%), Gaps = 51/378 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLPNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKSGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKALQTIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
P G GL Y FTSPIRRY DL+ H +K + G+ A +L
Sbjct: 532 RY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATRLTTEVE 588
Query: 497 IVNMQTRIARRLSNTSLR 514
+ Q+ R++ + R
Sbjct: 589 YASKQSSEMERVAQEAER 606
>gi|311031851|ref|ZP_07709941.1| ribonuclease R [Bacillus sp. m3-13]
Length = 790
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 166/343 (48%), Gaps = 50/343 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D
Sbjct: 245 EKDLGDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVTHYVTEGSPLD 304
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVS--VVLHSDGSIAEYSVD 296
+A +RGTS++L PM P +L+ SL N +T+S + +++ G + ++ +
Sbjct: 305 MEAQERGTSIYLVDRVIPMIPHRLSNGICSLNPK--VNRLTISCEMEINNAGEVVKHEIF 362
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEA---------ELKILSEAAALRLQWRLQQGAIDT 347
+S+IK T +TY ++L ++ +EE +++ E AA+ + R+ +GAID
Sbjct: 363 HSVIKTTERMTYSDVKKIL-VDKDEEVISRYESLVPMFQLMEELAAVLRKKRMTRGAIDF 421
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E+++ V P+ + V + A RL+ E M++ E +A + + N+ YR
Sbjct: 422 DFKESKVIVDEEGAPKDV----VLRERSVAERLIEEFMLVANETVAEHFHWMNVPFIYRV 477
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ ++ F ++ PE V S+ +++ M+
Sbjct: 478 HEDPKEEKLQRFFEFITNFGYVVKGKGNEIHPRALQEVIEAVQGKPEEMVVSTVMLRSMK 537
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A D + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 538 QAKYD-EESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 579
>gi|256004830|ref|ZP_05429804.1| ribonuclease R [Clostridium thermocellum DSM 2360]
gi|385779413|ref|YP_005688578.1| ribonuclease R [Clostridium thermocellum DSM 1313]
gi|419722565|ref|ZP_14249705.1| ribonuclease R [Clostridium thermocellum AD2]
gi|419725555|ref|ZP_14252596.1| ribonuclease R [Clostridium thermocellum YS]
gi|255991140|gb|EEU01248.1| ribonuclease R [Clostridium thermocellum DSM 2360]
gi|316941093|gb|ADU75127.1| ribonuclease R [Clostridium thermocellum DSM 1313]
gi|380771125|gb|EIC05004.1| ribonuclease R [Clostridium thermocellum YS]
gi|380781332|gb|EIC10990.1| ribonuclease R [Clostridium thermocellum AD2]
Length = 757
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 158/349 (45%), Gaps = 49/349 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED + R+DL L + ID ++A +LDDA+S RL +G ++ +H+AD + Y++ GS
Sbjct: 239 TEDMIKGRRDLRDLTMVTIDGEDAKDLDDAVSIERLPNGNYRLGVHIADVSYYVKEGSPL 298
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A+KRGTSV+L PM P++L+ SL A TV + + G + ++ +
Sbjct: 299 DKEALKRGTSVYLVDRVIPMLPKELSNGICSLNPKVDRLAFTVMMEIDKSGRVVDHEIFE 358
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I +TY ++L N E E + E A + + R+ +GAID
Sbjct: 359 SVINVNERMTYTDVYKILEENDEGLIERYKYLCDTFHTMKELALILRKKRMDRGAIDFNF 418
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + E PI + Y + A ++ E M++C E +A + + N YR
Sbjct: 419 DEAKIVL--DEKGVPIEVKRY---EMTIANNIIEEFMLVCNETVAEHFFWTNTPFVYRIH 473
Query: 409 PQSNID----VSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ D S F H E + S+ +++ ++ A
Sbjct: 474 EDPDPDKIEAFSEFVHNLGYTLKGINKIHPKALQDVLEKARGTKEETIISTVMLRSLQKA 533
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPP 485
+ G GL Y FTSPIRRY DL+ H +K L+G P
Sbjct: 534 RYSH---INSGHFGLAAKYYCHFTSPIRRYPDLIIHRIMKEYLKGTVNP 579
>gi|167754476|ref|ZP_02426603.1| hypothetical protein ALIPUT_02772 [Alistipes putredinis DSM 17216]
gi|167659101|gb|EDS03231.1| ribonuclease R [Alistipes putredinis DSM 17216]
Length = 757
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 177/400 (44%), Gaps = 55/400 (13%)
Query: 173 NFLQKAED------------NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKV 220
+F QK ED + R+D + + ID +A + DDALS +++DG +V
Sbjct: 233 HFEQKVEDAAQAIPSTITKADYAARRDFRKITTFTIDPADAKDFDDALSIRKIEDGVWEV 292
Query: 221 YIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV 280
+H+AD T Y++P S+ D +A +RGTSV+L T PM PEKL+ E SLR E +
Sbjct: 293 GVHIADVTHYVQPRSVIDTEAEERGTSVYLVDRTIPMLPEKLSNELCSLRPDEESLCFSA 352
Query: 281 SVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL-QWR 339
L+ + + + ++I TYE A +++ + AE + A R+ + R
Sbjct: 353 VFTLNEEAEVLDKWFGRTVILSDRRFTYEEAQQIIETGKGDFAEEVLTLNRLAQRMRKTR 412
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN 399
++GA+ E + K+ P + +Y ++Q + A +L+ E M+L + +A + +
Sbjct: 413 FKRGAVSFQREEAKFKLDAEGKP---LGVYFKEQKE-ANQLIEEFMLLANKQVAEFCGHH 468
Query: 400 NL-------ALPYRGQPQSNID--------VSAFAHL-------------------PEGP 425
+ + YR N + V F ++ +G
Sbjct: 469 KVNGRAVRRTMVYRVHDVPNEEKLEKFRTFVLRFGYVFKADKGRAVAKEMNKLLGQAKGR 528
Query: 426 VRSSAIVKI-MRAAAIDFRKP--VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ + I + +RA + F + H L P Y FTSPIRRY D++ H + L G
Sbjct: 529 IEENVISNLAVRAMSKAFYSTDNIGHYGLAFPYYTHFTSPIRRYPDMMVHRLLARYLEG- 587
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLR 522
E + + + IA S++Y ++EF++
Sbjct: 588 GKSADRDTFEKLCVHASEREVIAAEAERASIKYKMVEFMQ 627
>gi|34764100|ref|ZP_00144977.1| Exoribonuclease II [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27886126|gb|EAA23425.1| Exoribonuclease II [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 701
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 177/381 (46%), Gaps = 42/381 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A R
Sbjct: 245 RKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARNR 304
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+L PMFP++++ SL + E + + + G + Y V S+I+ +
Sbjct: 305 GNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIRSVH 364
Query: 305 MLTYESATELL--HLNLEEEAE-----LKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+TY++ +L NL E LK + E + + + ++G+ID E ++ +
Sbjct: 365 RMTYKAVNGILDGDKNLINEYSDIYEMLKQMLELSKILRAKKHKRGSIDFELPELKVVLD 424
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------- 410
E E + Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 425 KDEKVEKV---YLKDRGE-GEKIIEDFMIAANETVAERIFWLELASIYRTHEKPDREKIV 480
Query: 411 ----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH-----G 449
NI F + E R+ ++ + K R+ G
Sbjct: 481 KLNEILSKFGYKIPNFDNIHPKQFQEIIERS-RNKETSMLVHKTILTSLKQARYTVEDIG 539
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL+ H + + + PF L+ +A ++ R+A +
Sbjct: 540 HFGLASSHYTHFTSPIRRYADLMVHRVLFSTIDNSIKPFKEVDLDEIAQHISKTERVAMK 599
Query: 508 LSNTSLRYWIIEFLRRQPKER 528
+ S+R ++E+++++ E+
Sbjct: 600 AEDESVRIKLVEYMQKRVGEK 620
>gi|312881458|ref|ZP_07741252.1| exoribonuclease II [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370880|gb|EFP98338.1| exoribonuclease II [Vibrio caribbenthicus ATCC BAA-2122]
Length = 659
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/430 (28%), Positives = 194/430 (45%), Gaps = 63/430 (14%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNG-----------ASCSIKPQQVTFV 159
QKGL + K+ D ++ + + P + D++G A I P VT
Sbjct: 116 QKGLKSDDLKEGDWIVGHLIRHP-------LTDESGFFVEISQKVADADDKIAPWWVTLA 168
Query: 160 VPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK 219
+ + K I + Q +D L R+D++HL ID + ++DDAL + + G K
Sbjct: 169 ENDLPNSEPKGIDQW-QILDDTALERRDISHLPFVTIDGESTKDMDDALYIEKSESGDFK 227
Query: 220 VYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVT 279
+ + +ADPT YI P S DK A +RG +++LP PM P LA + SL + EV A+
Sbjct: 228 LVVAIADPTAYIVPDSEMDKVARERGFTIYLPGRNIPMLPRDLADDLCSLMENEVRPALC 287
Query: 280 VSVVLHSDGSIAE-YSVDNSIIKPTYMLTYESATELLHLN----LEEEAEL-KILSEA-- 331
SV + + G IA+ + IK L+Y+ ++ L + +A++ K++SE
Sbjct: 288 CSVTIDNTGMIADDIEFFAAQIKSHAKLSYDHVSDFLENGGCDEWQPDADIAKVVSELYE 347
Query: 332 -AALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---L 387
+ +R WR Q + + R +++ D +I ++ D+ A RLV E MI +
Sbjct: 348 FSKVRANWREQNAVVFPDRPDYRFELSEDND---VIVIHA-DKRRSANRLVEEAMITANI 403
Query: 388 CGEAIATY----GSFNN--------------LALPYRGQP---QSNIDVSAFAHL----- 421
CG I G FN L P Q +S D++ FA L
Sbjct: 404 CGGRILKTSFDSGVFNTHAGFKPEKLAEVVALVNPEGEQAFTEESLTDLNGFAELRRWLA 463
Query: 422 -PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
E + I K + I KP+ H +GL Y +TSPIR+Y D++ H +KA +
Sbjct: 464 SQETSYLDNRIRKFQAYSEIG-NKPLPHYAMGLDIYATWTSPIRKYGDMINHRLLKAHIL 522
Query: 481 GESPPFSAGQ 490
+ P +A +
Sbjct: 523 AKDPVQTADE 532
>gi|312792712|ref|YP_004025635.1| ribonuclease r [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179852|gb|ADQ40022.1| ribonuclease R [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 716
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 168/349 (48%), Gaps = 54/349 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++L R DL ++ ID ++A + DDA+S +L +G + +H+AD + Y++P +
Sbjct: 245 TEEDLEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTHL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A +RGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 DKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEIDKQGNVVKHDI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEA-----------ELKILSEAAALRLQWRLQQGA 344
S+I+ +TY + T++L EE+ +L+++ E A + + R+++GA
Sbjct: 363 FESVIRSKERMTYTNVTKILK---EEDKDLLKRYEHIREDLELMRELALILREKRMKRGA 419
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ET++ + P ++ + + +++ E M++C E +A + + N+
Sbjct: 420 LDFDFDETKVILDKNGKPIDVVRY----ELTISNKIIEEFMLICNETVANHFYWLNVPFL 475
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 476 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPEERVIHTLCLR 535
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
++ A + + H L Y FTSPIRRY DL+ H +K L+G+
Sbjct: 536 SLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIHRIMKDVLKGK 583
>gi|94984140|ref|YP_603504.1| ribonuclease II [Deinococcus geothermalis DSM 11300]
gi|94554421|gb|ABF44335.1| ribonuclease II, VacB-like protein [Deinococcus geothermalis DSM
11300]
Length = 469
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 161/353 (45%), Gaps = 23/353 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L YAID + + DDA+ L G ++++HVAD + GS D++A R
Sbjct: 85 RLDLTQLPAYAIDDEGNRDPDDAVGIEVLGGGLTRLWVHVADVAALVPAGSPLDEEARAR 144
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G +++LP T M P+ L +E L E+ A+++++ L +G+ V + ++
Sbjct: 145 GATLYLPDRTIGMLPDAL-VERAGLGLSEITPALSIALDLDEEGNADAVEVQLTRVR-VQ 202
Query: 305 MLTYESATELLHLNLEEEAELKILSEAA-ALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A E L E L L+ A+ AL R +GA+ E R+K +
Sbjct: 203 RLTYTQAQERLSAGEEPFVTLARLARASRAL----REGEGALTIDLPEVRVKADD----- 253
Query: 364 PIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
V P MR +V E M L G A A Y + L LP+ Q DV LP
Sbjct: 254 --RGATVTPLPKPEMRAVVQECMTLAGWAAAIYADDHGLPLPFATQDAPTRDVPGDT-LP 310
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
R + + A P H +GL Y Q TSP+RRY+DL+ H Q++A L G
Sbjct: 311 AHWARRKTLARTRFQPA-----PGPHHGMGLDLYAQATSPLRRYLDLVVHQQLRAHLTGA 365
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALIL 535
P S + + M R+ S ++ + F+ QP ER + A+++
Sbjct: 366 E-PLSGKDVAARVAQAQMNADATRQAERLSRKHHTLRFVAAQP-ERVWDAVVV 416
>gi|423304593|ref|ZP_17282592.1| ribonuclease R [Bacteroides uniformis CL03T00C23]
gi|423310293|ref|ZP_17288277.1| ribonuclease R [Bacteroides uniformis CL03T12C37]
gi|392682489|gb|EIY75834.1| ribonuclease R [Bacteroides uniformis CL03T12C37]
gi|392684043|gb|EIY77375.1| ribonuclease R [Bacteroides uniformis CL03T00C23]
Length = 714
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 167/380 (43%), Gaps = 43/380 (11%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+ G +V +H+AD T Y++ G + DK
Sbjct: 254 EEIARREDFRGVTTFTIDPKDAKDFDDALSIRKLKGGLWEVGVHIADVTHYVKEGGIIDK 313
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + V +++
Sbjct: 314 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEMTEKGEVKNSRVVHTV 373
Query: 300 IKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
IK TYE A E++ + + E+ L + A + + R + GAI+ E + ++
Sbjct: 374 IKSDRRFTYEEAQEIIETGKGDFQEEMLQLDKLAKILRENRFKAGAINFDRYEVKFEIDE 433
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQP 409
P +++Y ++ D A +L+ E M+L +A LPYR P
Sbjct: 434 KGKP---VSVYFKESKD-ANKLIEEFMLLANRTVAEKIGRVPKGKKAKVLPYRIHDLPDP 489
Query: 410 Q--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAID 441
+ + D+S + HL E + + ++ M+ A
Sbjct: 490 EKLDNLAQFIARFGYKLRTSGTKTDISKSINHLLDDIQGKKEENLIETVSIRAMQKARYS 549
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQ 501
V H L Y FTSPIRRY D++ H + L S + E + +
Sbjct: 550 VHN-VGHYGLAFDYYTHFTSPIRRYPDMMVHRLLTKYLDQGGRTVSEQKYEALCEHSSSM 608
Query: 502 TRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 EQIASNAERASIKYKQVEFM 628
>gi|319900672|ref|YP_004160400.1| RNAse R [Bacteroides helcogenes P 36-108]
gi|319415703|gb|ADV42814.1| RNAse R [Bacteroides helcogenes P 36-108]
Length = 717
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 122/469 (26%), Positives = 198/469 (42%), Gaps = 60/469 (12%)
Query: 106 ENQVLQKGLL-----LEFKKDSDRVLLAVAQRPDGKKN--WMVYDQNGASCSIKPQQ--- 155
EN+ L + L+ K D+ ++ V + PD KN V D G + +
Sbjct: 170 ENRTLANDIFIPKEKLKGGKTGDKAIVKVVEWPDKAKNPIGQVIDILGRTGDNTTEMHAI 229
Query: 156 -----VTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSA 210
+ +V P + IS+ + E + R+D + + ID +A + DDALS
Sbjct: 230 LAEFGLPYVYPSAVENAADKISDEIPAEE--IAKREDFRSVTTFTIDPKDAKDFDDALSI 287
Query: 211 MRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR 270
+L++G +V +H+AD T Y++ G + DK+A KR TSV+L T PM PE+L SLR
Sbjct: 288 RKLKEGLWEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLR 347
Query: 271 QGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILS 329
E A +V + G + V +++IK TYE A ++ + + E+ L
Sbjct: 348 PDEEKLAYSVIFEMTEKGEVNNSRVVHTVIKSNRRFTYEEAQNIIETRKGDFKEEVLQLD 407
Query: 330 EAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG 389
A L + R + GAI+ E + ++ P +++Y ++ D A +LV E M+L
Sbjct: 408 RLAKLLRESRFKAGAINFDRYEVKFEIDEKGKP---VSVYFKESKD-ANKLVEEFMLLAN 463
Query: 390 EAIATY-----GSFNNLALPYR----GQPQ--------------------SNIDVS-AFA 419
+A LPYR P+ + DVS +
Sbjct: 464 RTVAEKIGRVPKGKKAKVLPYRIHDLPDPEKLDNLAQFIARFGYKLRTGGTKTDVSKSIN 523
Query: 420 HL-------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
HL E + + ++ M+ A V H L Y FTSPIRRY D++ H
Sbjct: 524 HLLDDIQGKKEENLIETVSIRAMQKARYSVHN-VGHYGLAFDYYTHFTSPIRRYPDMMVH 582
Query: 473 YQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFL 521
+ L S + E + + +IA S++Y +EF+
Sbjct: 583 RLLTKYLDLGGRSVSEQKYEALCEHSSSMEQIAANAERASIKYKQVEFM 631
>gi|260777275|ref|ZP_05886169.1| exoribonuclease II [Vibrio coralliilyticus ATCC BAA-450]
gi|260606941|gb|EEX33215.1| exoribonuclease II [Vibrio coralliilyticus ATCC BAA-450]
Length = 667
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 197/430 (45%), Gaps = 55/430 (12%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRP-DGKKNWMVYDQ---NGASCSIKPQQVTFVVPGVEK 165
++KGL + K+ D V+ + + P G + V A I P VT +
Sbjct: 115 VKKGLKSDDFKEGDWVVAHLIRHPLKGDNGFFVEISEKITDADDKIAPWWVTLAQNDLPN 174
Query: 166 FDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVA 225
+ I N+ K +D L R D+TH+ ID + ++DDAL A + + G ++ I +A
Sbjct: 175 SEPAGIDNWEIK-DDAELERVDMTHVPFVTIDGESTKDMDDALYAKKTESGDFELTIAIA 233
Query: 226 DPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH 285
DPT YI P S DK A +RG +++LP PM P LA E SL + E A+ +V +
Sbjct: 234 DPTAYITPDSDMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIENEERPALCCTVTIS 293
Query: 286 SDGSIA-EYSVDNSIIKPTYMLTYESATELLHLN-------LEEEAEL-KILSEAAALRL 336
DG I + + IK L Y+ ++ L EE AE+ + L E + R
Sbjct: 294 KDGVIGDDVKFFAANIKSHARLAYDHVSDWLETGQSEAWQPTEEIAEIVRDLYEFSKARA 353
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAI 392
+WR + + R +++ D ++ ++ D A RLV E MI +C G+A+
Sbjct: 354 EWRETHAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANRLVEESMITANICAGKAL 409
Query: 393 -ATY--GSFNNLALPYRGQPQSNIDVSAFAHLPEG--PVRSSAIVKI------------M 435
A++ G FN A +P+ DV + PEG P + ++V +
Sbjct: 410 KASFDSGVFNTHA---GFKPEKIADVIELVN-PEGELPFTAESVVTLEGFAELRRWLAKQ 465
Query: 436 RAAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
+ +D R +P+ H +GL Y +TSPIR+Y D++ H +KA + G++
Sbjct: 466 ETSYLDNRIRKYQAYSEIGNQPLPHYAMGLELYATWTSPIRKYGDMINHRMLKAHILGKA 525
Query: 484 PPFSAGQLEG 493
P +A + G
Sbjct: 526 PVQTADESVG 535
>gi|392397436|ref|YP_006434037.1| RNAse R [Flexibacter litoralis DSM 6794]
gi|390528514|gb|AFM04244.1| RNAse R [Flexibacter litoralis DSM 6794]
Length = 797
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 109/401 (27%), Positives = 174/401 (43%), Gaps = 55/401 (13%)
Query: 166 FDHKDISNFLQKAE---DNLLN-----RKDLTHLKVYAIDVDEADELDDALSAMRLQDGR 217
FD K ++KAE D+L + R+D + + ID +A + DDA+S L +G
Sbjct: 301 FDEK----LIKKAEEVPDDLTDKEFKKRRDFRPILTFTIDPHDAKDFDDAISLSYLPNGN 356
Query: 218 IKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNA 277
++ +H+AD T YI P +L +K+A KR TSV+L PM PE+++ SLR E A
Sbjct: 357 YEIGVHIADVTHYIRPNTLLEKEAQKRATSVYLVDRVVPMLPERISNNLCSLRPQEEKLA 416
Query: 278 VTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRL 336
+ L +GS+ ++I TYE A E + + A E+ +L++ A
Sbjct: 417 FSAVFELDKNGSVHNRWYGKTVIYSDRRFTYEEAQERIETKEGDYADEINLLNDIAKKLQ 476
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY- 395
R + GAI T E + ++ P +I +D A +LV E M+L +++A +
Sbjct: 477 AKRFKHGAISFETQEVKFQLDENGKPLGVIQKIRKD----AHKLVEEYMLLANKSVAEFV 532
Query: 396 -----GSFNNLALPYRGQPQSNID-----------------------VSAFAHL------ 421
G N + YR + D ++ A L
Sbjct: 533 YRYKNGKEKNTMI-YRVHDDPDPDKLANLKAMAKSFGYDINIEPEFFAASLAKLVEDTEG 591
Query: 422 -PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
PE S ++ M + A+ K H L Y FTSPIRRY D++AH ++ L+
Sbjct: 592 KPEYETLQSLAIRSM-SKAVYTTKATGHFGLAFDHYSHFTSPIRRYPDMMAHRLIEKYLK 650
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFL 521
+ + E MA + + A S+R+ EF+
Sbjct: 651 NNIKSVNPEKYESMARHSSDMEKRASDAERASIRFKQAEFM 691
>gi|193216723|ref|YP_001999965.1| VacB-like exoribonuclease II [Mycoplasma arthritidis 158L3-1]
gi|193002046|gb|ACF07261.1| VacB-like exoribonuclease II [Mycoplasma arthritidis 158L3-1]
Length = 718
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 150/338 (44%), Gaps = 42/338 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLT L ID + + DDA+S +L++G K++IH+AD + Y++ G DK+A++
Sbjct: 265 NRVDLTSLLTVTIDGLDTKDFDDAISCSKLENGNYKLFIHIADVSHYVKEGDAIDKEALE 324
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTS++LP PM P L+ SL + +T+ + L + G V S+IK
Sbjct: 325 RGTSIYLPDKVIPMLPFALSNGICSLNPNVIRACLTLELELDNHGKNVSSKVYASLIKSD 384
Query: 304 YMLTYESATELLHLNLEEEAELKIL----SEAAALRLQWRLQQGAIDTATLETRIKVANP 359
Y LTY + + +E E+ L E + + +++ G +D E +I + +
Sbjct: 385 YRLTYNEVNDFFNQKIEVPNEINNLLSRAREISKILRAKKIKDGYVDFEIEEPKIIMEDN 444
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT------------------------- 394
+ + +I + A +L+ + M+ E IA
Sbjct: 445 DIKDIVIR-----KDGEAEKLIEDFMVRANETIAEMMKELKIPSIYRIHDKPETLKLSAL 499
Query: 395 -----YGSFNNLALPYRGQPQS-NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+ N+ +P+ G P+S I V+ + A+++ M+ A + H
Sbjct: 500 QELLGFVGMKNIQVPFDGSPKSFEIMVNKIKAIKLDDYLKMALLRTMQKAQYS-SNNIGH 558
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAHYQV-KACLRGESPP 485
L Y FTSPIRRY DLL H + K L G+ P
Sbjct: 559 FGLASSAYSHFTSPIRRYPDLLLHRLIRKYILNGKFDP 596
>gi|410696912|gb|AFV75980.1| ribonuclease R [Thermus oshimai JL-2]
Length = 702
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 173/370 (46%), Gaps = 54/370 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E L R+D L+V+ ID +A + DDA+ L DG ++ +H+AD + Y++ GS D
Sbjct: 220 EAELRRREDFRALRVFTIDGVDAKDFDDAIHIEVLPDG-YRIGVHIADVSHYVKEGSPLD 278
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVD-- 296
++A RGTSV+LP PMFPE+L+ SL GE + + +SV+ H D + V
Sbjct: 279 QEAFLRGTSVYLPGRVLPMFPERLSNGVCSLVPGE--DRLVLSVLFHLDKDLKVKRVRFV 336
Query: 297 NSIIKPTYMLTY---ESATELLHLNLEEEAEL-----KILSEAAALRLQWRLQQGAIDTA 348
+I+ LTY E+ E L EE A L L LR Q RL++GA+D +
Sbjct: 337 EGVIRSVARLTYTEVEAFAEGFGLP-EEHAFLAEDLRHFLHLTQRLR-QRRLEEGALDFS 394
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIA-------------- 393
E +++V + L++ Q +P R L+ E+M+L A+A
Sbjct: 395 FPEVKVEVGEGGE------LHLIPQQEPKARSLIEELMLLANRAVAEHLVKKGLPGLFRV 448
Query: 394 -------TYGSFN------NLALP--YRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAA 438
YG LP G+ + + A H PE PV ++ +++ +R A
Sbjct: 449 HEEPLEEAYGRLRTALQRLGYTLPEEVEGKALQRVLLEAKGH-PEEPVVANLVLRSLRLA 507
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE-SPPFSAGQLEGMASI 497
+ H L + Y+ FTSPIRRY DL+ H +KA LR +P A LE +
Sbjct: 508 RYAAEN-LGHFGLAMAHYLHFTSPIRRYPDLVVHRVLKALLRRTLTPAKKARWLETFPQV 566
Query: 498 VNMQTRIARR 507
+ + R+
Sbjct: 567 AEHASEMERK 576
>gi|374673000|dbj|BAL50891.1| ribonuclease [Lactococcus lactis subsp. lactis IO-1]
Length = 817
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 164/346 (47%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 253 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RINRLTQSCVMEISPEGRVINYQIS 370
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE+ A++ KI+ E + R ++GAID T
Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDEAALEKYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G++P
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGEGKTP 591
>gi|311069884|ref|YP_003974807.1| ribonuclease R [Bacillus atrophaeus 1942]
gi|419821746|ref|ZP_14345337.1| ribonuclease R [Bacillus atrophaeus C89]
gi|310870401|gb|ADP33876.1| ribonuclease R [Bacillus atrophaeus 1942]
gi|388474053|gb|EIM10785.1| ribonuclease R [Bacillus atrophaeus C89]
Length = 779
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 163/346 (47%), Gaps = 56/346 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQIIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINKQGQVVEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY ++L ++++ ELK E A LR + R+++GA+D
Sbjct: 362 VIKTTERMTYSDVKKIL---VDDDEELKTKYEQLVPMFKDMEKLAEILRGK-RMERGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEDGAAKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVVSTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
+ A D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 534 KQAKYD---PESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|323499261|ref|ZP_08104238.1| exoribonuclease II [Vibrio sinaloensis DSM 21326]
gi|323315649|gb|EGA68683.1| exoribonuclease II [Vibrio sinaloensis DSM 21326]
Length = 666
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 193/429 (44%), Gaps = 55/429 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP-DGKKNWMVYDQ---NGASCSIKPQQVTFVVPGVEKF 166
+KG+ + K+ D V+ + + P G + V A I P VT +
Sbjct: 116 RKGIKSDDLKEGDWVVAHLTRHPLKGDNGFFVEISEKITDADDKIAPWWVTLAQNDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I N+ + +D L R D+TH+ ID + ++DDAL A + +G ++ I +AD
Sbjct: 176 EPAGIDNW-EIRDDADLERIDMTHVPFVTIDGESTKDMDDALFAKKKDNGDFELTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P S DK A +RG +++LP PM P LA E SL +GE AV SV +
Sbjct: 235 PTAYITPDSEMDKVARQRGFTIYLPGRNIPMLPRDLADELCSLIEGEQRPAVCCSVTISK 294
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNL-------EEEAEL-KILSEAAALRLQ 337
DG IA + + IK L Y+ ++ + EE A++ + L + + R
Sbjct: 295 DGVIADDIQFFAANIKSHARLAYDHVSDWIENGQSDAWQPSEEIAQIVRDLYDFSLARAD 354
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG----E 390
WR + + + R +++ D ++ ++ D A RLV E MI +C +
Sbjct: 355 WREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANRLVEEAMITANICAGKTLQ 410
Query: 391 AIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG--PVRSSAIVKIMRAAA--------- 439
A G FN A +P+ DV A + PEG P + +I + AA
Sbjct: 411 ASFNSGVFNTHA---GFKPEKIEDVVALVN-PEGELPFTAESIATLEGFAALRRWLASQE 466
Query: 440 ---IDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+D R +P+ H +GL Y +TSPIR+Y D++ H +KA + G+ P
Sbjct: 467 TSYLDNRIRKSQAYSEIGNQPLPHYAMGLDLYATWTSPIRKYGDMINHRMLKAHILGKEP 526
Query: 485 PFSAGQLEG 493
+A + G
Sbjct: 527 VQTADETVG 535
>gi|153807031|ref|ZP_01959699.1| hypothetical protein BACCAC_01308 [Bacteroides caccae ATCC 43185]
gi|423219986|ref|ZP_17206482.1| ribonuclease R [Bacteroides caccae CL03T12C61]
gi|149130151|gb|EDM21361.1| ribonuclease R [Bacteroides caccae ATCC 43185]
gi|392624249|gb|EIY18342.1| ribonuclease R [Bacteroides caccae CL03T12C61]
Length = 718
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 172/382 (45%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L++G +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKEGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFNITEKGEVKDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKVGRVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H + + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVHRLLTKYING-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|409386984|ref|ZP_11239297.1| 3'-to-5' exoribonuclease RNase R [Lactococcus raffinolactis 4877]
gi|399205835|emb|CCK20212.1| 3'-to-5' exoribonuclease RNase R [Lactococcus raffinolactis 4877]
Length = 767
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 159/349 (45%), Gaps = 55/349 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +++ R D + + ID +A +LDDA+ L +G I++ +H+AD + Y+ GS D
Sbjct: 253 EKDIIGRVDYRNEITFTIDGADAKDLDDAVHIKALDNGNIELGVHIADVSYYVTEGSALD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
++A+ RGTS ++ PM PE+L+ SL G N T S V+ +SDG + Y +
Sbjct: 313 REALNRGTSTYVTDRVVPMLPERLSNGICSLNLG--VNRFTQSCVMEINSDGHVVNYQIS 370
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAELKILSEAA-------ALRLQWRLQQGAIDTAT 349
S+IK T +TY E+L N E + +++E+ + L R ++G+ID T
Sbjct: 371 QSVIKTTERMTYSDVNEMLAGNQEFLDKFAVIAESVEQMAKLHEILLAMRARRGSIDFET 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I + V + M ++ M++ E +A SF LP+
Sbjct: 431 QEAKIIVDKLGKP---IEIQVRKRGTAEM-MIESFMLIANETVAR--SFATRELPFIYRV 484
Query: 406 -----------------------RGQPQS--NIDVSAF----AHLPEGPVRSSAIVKIMR 436
+G P+ + D+ F P V S+ +++ M+
Sbjct: 485 HEHPKADKLTRFIDFASVFGIPLKGTPEKMQSKDLQDFMLKIKGQPGEMVLSTMLLRSMQ 544
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPP 485
A D + H L Y FTSPIRRY DLL H +R ES P
Sbjct: 545 QARYD-EDNLGHFGLAAEYYTHFTSPIRRYPDLLVH----RLIRAESHP 588
>gi|255524714|ref|ZP_05391666.1| ribonuclease R [Clostridium carboxidivorans P7]
gi|255511608|gb|EET87896.1| ribonuclease R [Clostridium carboxidivorans P7]
Length = 722
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 162/349 (46%), Gaps = 57/349 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYERRKDLRDLTIVTIDGEDAKDLDDAVSLEKLPNGNYHLGVHIADVSNYVKDKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++++
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--VDRLTLSCFMEIDKTGKVVDHNIT 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK +TY T++L E+ + K++ E + + R+Q+GAID
Sbjct: 356 ESIIKTNERMTYTDVTKILRDTDEDVIKRYDYLVDTFKLMEELCGILYKKRIQRGAIDFD 415
Query: 349 TLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
E +I ++ P + +P + A R++ E M++C E IA + + N+ Y
Sbjct: 416 FEECKIILNELGKPIEIKPY-------ERAIANRIIEEFMLVCNETIAEHMFWANMPFVY 468
Query: 406 RGQPQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIM 435
R + + + + F H E V S+ +++ M
Sbjct: 469 RIHEEPDEEKLMHFNEFVHNLGYVVRMGQEVHPKALQDIVEKVKGKKEETVVSTLLLRSM 528
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGE 482
A P G GL Y FTSPIRRY DL+ H +K + G+
Sbjct: 529 MKARY---APECTGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEFINGQ 574
>gi|311748419|ref|ZP_07722204.1| ribonuclease R [Algoriphagus sp. PR1]
gi|126576931|gb|EAZ81179.1| ribonuclease R [Algoriphagus sp. PR1]
Length = 733
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 170/392 (43%), Gaps = 79/392 (20%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+RKD + + ID +A + DDA+S L +G +++ +H+AD T Y++P + +K+A
Sbjct: 268 SRKDFRGVPTFTIDPADAKDFDDAISYQVLPNGNLEIGVHIADVTHYVQPKTALEKEAFN 327
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIK 301
R TSV+L T PM PE+L+ SLR E + +T S V D +I ++ + ++I
Sbjct: 328 RATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEMDREANILKHWIGRTVIH 385
Query: 302 PTYMLTYESATELLHLNLEEE-----AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
YE A E N++ + AEL +L++ A + R GA++ T+E + K+
Sbjct: 386 SDRRFAYEEAQE----NIDNQSGDFFAELTLLNDLAKKVRKKRFNNGAVNFETVEVKFKL 441
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--------------------- 395
+ P + L V+++ D +L+ E M+L + +A +
Sbjct: 442 DDKGTP---LGLIVKERKD-IHKLIEEFMLLANKFVAEFIYKKNKGKDTFVYRTHDFPDM 497
Query: 396 --------------------------GSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSS 429
G+ N L +G+P+ N+ L + +RS
Sbjct: 498 ERLDTFSGFAKRFGHEFDIENEQKISGALNKLMDEIQGKPEQNV-------LEQLAIRSM 550
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAG 489
A K +P H L Y FTSPIRRY D++ H + L+G P
Sbjct: 551 AKAKYT-------TEPKGHFGLAFAHYTHFTSPIRRYPDMMVHRLLDHYLQGGKSPDPDS 603
Query: 490 QLEGMASIVNMQTRIARRLSNTSLRYWIIEFL 521
+ + + R A S++Y +EF+
Sbjct: 604 WEQKCVHSSDREKRAA-DAERASIKYKQVEFM 634
>gi|281491445|ref|YP_003353425.1| VacB family exoribonuclease R [Lactococcus lactis subsp. lactis
KF147]
gi|281375163|gb|ADA64676.1| Exoribonuclease R, VacB family [Lactococcus lactis subsp. lactis
KF147]
Length = 817
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 165/346 (47%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 253 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RINRLTQSCVMEISPEGRVINYQIS 370
Query: 297 NSIIKPTYMLTYESATELLHLN---LEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ + LE+ A++ KI+ E + R ++GAID T
Sbjct: 371 QSIIKTTEKMTYDAVNQMIAGDEAALEKYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G++P
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGEGKTP 591
>gi|168185501|ref|ZP_02620136.1| ribonuclease R [Clostridium botulinum C str. Eklund]
gi|169296470|gb|EDS78603.1| ribonuclease R [Clostridium botulinum C str. Eklund]
Length = 745
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 169/374 (45%), Gaps = 43/374 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL + + ID ++A +LDDA+S +L +G + +H+AD + Y++ S D
Sbjct: 238 EEEAKGREDLREVVMVTIDGEDAKDLDDAVSIEKLDNGNYLLGVHIADVSHYVKEKSPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+KR TSV+L PM P++L+ SL A+T + +++ G + Y + S
Sbjct: 298 KEALKRATSVYLINKVIPMLPKELSNGICSLNPKVDRLAMTCFMEINNKGKVENYRITKS 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK +TY T++L E E K++ E + + R+ +GAID
Sbjct: 358 VIKTNERMTYTDVTKMLRDKDEATIEKYKDLYKYFKLMEELCEILYKKRISRGAIDFEFE 417
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG--- 407
E++I + + P I++ ++A A R++ E M++C E +A + + + YR
Sbjct: 418 ESKIILDDNGKP---IDIKPYERA-IANRIIEEFMLVCNETVAEHMYWTKIPFVYRIHED 473
Query: 408 --------------------QPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+P ++ A + EG R ++ + K R
Sbjct: 474 PDEERLQKFREFAYNLGYFIKPTKDVHPKALQEIIEG-ARGKKEETVVNTLLLRSLKQAR 532
Query: 448 H-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+ G GL Y FTSPIRRY DL+ H +K L G LE ++
Sbjct: 533 YAPQCVGHFGLAAKYYCHFTSPIRRYPDLIIHRIIKESLDGLIDDKRVKSLENKVDYASV 592
Query: 501 QTRIARRLSNTSLR 514
Q+ RL+ + R
Sbjct: 593 QSSDMERLAMEAER 606
>gi|407451488|ref|YP_006723212.1| hypothetical protein B739_0712 [Riemerella anatipestifer RA-CH-1]
gi|403312473|gb|AFR35314.1| hypothetical protein B739_0712 [Riemerella anatipestifer RA-CH-1]
Length = 721
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 176/387 (45%), Gaps = 44/387 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ P +L D
Sbjct: 256 DDEVKKRWDMRGICTFTIDPKDAKDFDDALSIRKLENGNWEIGVHIADVSHYVVPNTLLD 315
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +R TSV+L PM PE L+ E SLR E + L+ I + +
Sbjct: 316 QEAYQRATSVYLVDRVVPMLPEVLSNEVCSLRPNEDKYTFSAVFELNDKAEIKKQWFGRT 375
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+I TYE A E + + A E+ L + A + + R+++GAI E R +
Sbjct: 376 VIHSDRRFTYEEAQERIETGKGDLADEILTLDKLAKILREERIRKGAITFDRSEVRFNL- 434
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP------YRGQPQS 411
E+ EP I +Y + D + L+ E M+L ++ + S N P YR
Sbjct: 435 -DENNEP-IGVYFKVSKD-SNHLIEEFMLLANRKVSEFISLNKKGSPTGKTFIYRVHDDP 491
Query: 412 NID--------VSAFAH---LPEGPVRSSAIVKIMRAA-------------------AID 441
+ V+ F + L + ++ +++++ AI
Sbjct: 492 DPTKLEALRDFVATFGYKMNLANSQKVAESMNELLKSVKGKGEENMIETLAMRSMSKAIY 551
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL-RGESPPFSAGQLEGMASIVNM 500
+P+ H LG Y FTSPIRRY DL+AH ++ L +G+SP + E + +
Sbjct: 552 STEPIGHYGLGFEYYTHFTSPIRRYPDLIAHRLLQHYLDQGKSP--DKAEYEEKSKHCSA 609
Query: 501 QTRIARRLSNTSLRYWIIEFLRRQPKE 527
R+A S+++ ++F+ + E
Sbjct: 610 MERLAADAERDSIKFMQVKFMEKHLGE 636
>gi|160891706|ref|ZP_02072709.1| hypothetical protein BACUNI_04161 [Bacteroides uniformis ATCC 8492]
gi|270295199|ref|ZP_06201400.1| ribonuclease R [Bacteroides sp. D20]
gi|317478234|ref|ZP_07937400.1| ribonuclease R [Bacteroides sp. 4_1_36]
gi|156859113|gb|EDO52544.1| ribonuclease R [Bacteroides uniformis ATCC 8492]
gi|270274446|gb|EFA20307.1| ribonuclease R [Bacteroides sp. D20]
gi|316905627|gb|EFV27415.1| ribonuclease R [Bacteroides sp. 4_1_36]
Length = 714
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 167/380 (43%), Gaps = 43/380 (11%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+ G +V +H+AD T Y++ G + DK
Sbjct: 254 EEIARREDFRGVTTFTIDPKDAKDFDDALSIRKLKGGLWEVGVHIADVTHYVKEGGIIDK 313
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + V +++
Sbjct: 314 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEMTEKGEVKNSRVVHTV 373
Query: 300 IKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
IK TYE A E++ + + E+ L + A + + R + GAI+ E + ++
Sbjct: 374 IKSDRRFTYEEAQEIIETGKGDFQEEVLQLDKLAKILRENRFKAGAINFDRYEVKFEIDE 433
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQP 409
P +++Y ++ D A +L+ E M+L +A LPYR P
Sbjct: 434 KGKP---VSVYFKESKD-ANKLIEEFMLLANRTVAEKIGRVPKGKKAKVLPYRIHDLPDP 489
Query: 410 Q--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAID 441
+ + D+S + HL E + + ++ M+ A
Sbjct: 490 EKLDNLAQFIARFGYKLRTSGTKTDISKSINHLLDDIQGKKEENLIETVSIRAMQKARYS 549
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQ 501
V H L Y FTSPIRRY D++ H + L S + E + +
Sbjct: 550 VHN-VGHYGLAFDYYTHFTSPIRRYPDMMVHRLLTKYLDQGGRTVSEQKYEALCEHSSSM 608
Query: 502 TRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 EQIASNAERASIKYKQVEFM 628
>gi|330928649|ref|XP_003302347.1| hypothetical protein PTT_14121 [Pyrenophora teres f. teres 0-1]
gi|311322358|gb|EFQ89554.1| hypothetical protein PTT_14121 [Pyrenophora teres f. teres 0-1]
Length = 1049
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 118/475 (24%), Positives = 196/475 (41%), Gaps = 92/475 (19%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQ--DGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R+D +Y ID +A E+DD +S R+Q D +++HVA+PT + + A
Sbjct: 550 RRDWGSTTIYCIDDADAHEIDDGISIERVQGADSEFWIHVHVANPTAFFDKTHTLSGLAA 609
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+V+ P +PM PE E SL++ +T S ++ G++ E V + +++
Sbjct: 610 HMTETVYTPERFFPMLPEWANEEHFSLKRNRPV--ITFSSRINHTGNVLERKVQHGMVQN 667
Query: 303 TYMLTYESATELL--------------------------HLNLEEEAELKILSEAAALRL 336
+TY +LL L+ + +LK L AA
Sbjct: 668 VVSITYSQVAKLLGDDSTIETRTLVVGGTVPNRKPPKLPDLSSGQLTDLKDLYTAAKALW 727
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPE------------------PIINL-------YVE 371
+ R G I + T ++V + E PII L +++
Sbjct: 728 EARKAAGGIRFNSGNTSVRVWEDSEQEGLPWRSPSVQQARVIREDPIIQLTNTIPQGFIQ 787
Query: 372 DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG--QPQSNIDVSA----------FA 419
P +V EMM+L + AT+ + ++ + YRG +P S ++SA +
Sbjct: 788 LDLGPK-NIVEEMMLLACQTAATWCAERHIPVMYRGTIEPPSVEELSAEELQQLIQLHYE 846
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ P+ +A + AI P+ H ++G+P YV+ TSP+RRY D++AH+Q++A L
Sbjct: 847 KHGKVPLDLAARCQKALGRAIAHFSPLPHKIIGVPSYVKVTSPLRRYSDMMAHWQIEAAL 906
Query: 480 RGESP------------------PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIE-F 520
R E+ PFS Q+ ++ + RI S+ YW + F
Sbjct: 907 RYEAESGMKFDATAAPTTSRNLLPFSLRQMRESIVTLSPRERIISMAKRDSVNYWSAQAF 966
Query: 521 LR-----RQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEV 570
LR + P +R + R A L E GL+A Q GDE +V
Sbjct: 967 LRAFKYKQAPLPETFRFWVQSVKDGRGALGRLPEYGLKAFVMEESDVQAGDEWDV 1021
>gi|189346025|ref|YP_001942554.1| ribonuclease R [Chlorobium limicola DSM 245]
gi|189340172|gb|ACD89575.1| ribonuclease R [Chlorobium limicola DSM 245]
Length = 791
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 167/373 (44%), Gaps = 50/373 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+D+L NR D+ V+ ID +A + DDALS L D ++ +H+AD + Y+ S
Sbjct: 315 TDDDLKNRLDIRDKNVFTIDPVDAKDFDDALSIETLDDNLYRIGVHIADVSHYVPENSPL 374
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++AMKR TSV+L PM P +L+ + SL G A +V + + G + E++
Sbjct: 375 DREAMKRATSVYLVDRVIPMLPSRLSEQVCSLNPGVDRMAFSVFITMTESGEVREHAFHK 434
Query: 298 SIIKPTYMLTYESATE-LLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE E LL + AEL++L + + + R + G +D T E R ++
Sbjct: 435 TVIHSKRRYTYEDVQEILLKGEGDNAAELQLLEKISVQLREERFRHGGLDFETEEVRFRL 494
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSF-----NNLALPYR--G 407
+ +P +I + + + RL+ E M+L +A Y +F N + YR
Sbjct: 495 GSKGEPVEVI----KKERLSSHRLIEEFMLLANRKVAEYLTKTFRERKKNPQPVIYRVHD 550
Query: 408 QPQSNIDVSAFAHL-------------PEGPVRSSAIVK------------------IMR 436
PQ V A+ GP+ S+ ++ ++R
Sbjct: 551 APQQE-RVLVLANFVRKIGYTLKINREKTGPIVSAKALRQLLQQVHGSNVEFLVNELVLR 609
Query: 437 --AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV--KACLRGESPPFSAGQLE 492
+ AI + H LG Y FTSPIRRY DL+ H + LR + +L
Sbjct: 610 CMSKAIYTDENTGHFGLGFEHYTHFTSPIRRYPDLIVHRLLFEYENLRNRKKKITDKRLA 669
Query: 493 GMASIVNMQTRIA 505
++ + + +RI+
Sbjct: 670 ELSEKIRVTSRIS 682
>gi|15672924|ref|NP_267098.1| ribonuclease [Lactococcus lactis subsp. lactis Il1403]
gi|18202798|sp|Q9CH00.1|RNR1_LACLA RecName: Full=Ribonuclease R 1; Short=RNase R 1; AltName: Full=VacB
protein homolog 1
gi|12723878|gb|AAK05040.1|AE006328_8 ribonuclease [Lactococcus lactis subsp. lactis Il1403]
Length = 817
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 163/346 (47%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 253 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RINRLTQSCVMEISPEGRVINYQIS 370
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE A++ KI+ E + R ++GAID T
Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G++P
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGEGKTP 591
>gi|317474743|ref|ZP_07934017.1| ribonuclease R [Bacteroides eggerthii 1_2_48FAA]
gi|316909424|gb|EFV31104.1| ribonuclease R [Bacteroides eggerthii 1_2_48FAA]
Length = 719
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 166/376 (44%), Gaps = 45/376 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D ++ + ID +A + DDALS +L+D +V +H+AD T Y+ GS+ DK+A KR
Sbjct: 263 REDFRNITTFTIDPKDAKDFDDALSVRKLKDNLWEVGVHIADVTHYVTEGSIIDKEAEKR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G I + +++IK
Sbjct: 323 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAYSAIFEMTDKGEIKNSRIVHTVIKSDR 382
Query: 305 MLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
TYE A +++ + +EE LK+ + A LR + R GAI+ E + ++
Sbjct: 383 RFTYEEAQQIIETKEGDFKEEI-LKLDALAKILR-EKRFAAGAINFDRYEVKFEIDEKGK 440
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQSN 412
P I++Y ++ D A +LV E M+L +A S PYR P+
Sbjct: 441 P---ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKSKKPKVFPYRIHDLPDPEKL 496
Query: 413 IDVSAFAHLPEGPVRSSAIV--------------------KIMRAAAIDFRKPVRHGV-- 450
++S F +R+S ++ +I + R+ V
Sbjct: 497 DNLSQFIARFGYKLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSVHN 556
Query: 451 -----LGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIA 505
L Y FTSPIRRY D+L H + L S + E + + +IA
Sbjct: 557 IGHYGLSFDYYTHFTSPIRRYPDMLVHRLLTKYLDLGGRSVSEQKYEALCEHSSSMEQIA 616
Query: 506 RRLSNTSLRYWIIEFL 521
S++Y +E++
Sbjct: 617 ANAERASIKYKQVEYM 632
>gi|444380022|ref|ZP_21179189.1| Exoribonuclease II [Enterovibrio sp. AK16]
gi|443675843|gb|ELT82557.1| Exoribonuclease II [Enterovibrio sp. AK16]
Length = 665
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 162/354 (45%), Gaps = 47/354 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLTHL ID + ++DDAL + +DG + I +ADPT Y+ G+ DK
Sbjct: 186 DESLVREDLTHLPFITIDNESTKDMDDALHTVANEDGTFTLTIAIADPTAYVAQGTDLDK 245
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS-VDNS 298
+A +RG +++LP PM P +L+ + SLR E+ A+ V L +DG+I+E + ++
Sbjct: 246 EARERGFTIYLPGRNIPMLPRELSDDLCSLRDEEIRPALCCRVTLLADGTISEDAQFFSA 305
Query: 299 IIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQWRLQQGAIDTATL 350
IK L Y++ ++LL ++ ++ L A R+ WR
Sbjct: 306 TIKSQGRLAYDNVSDLLETGSCDKWQPSEIIAEQVNALHSLAKARMAWREANAVTFPDRP 365
Query: 351 ETRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LC-GEAIATYGSFNNLAL 403
+ R +++ D ++ ++V DP A R+V E MI +C G A+ + F
Sbjct: 366 DYRFELSEDND---VVAIHV----DPRRIANRMVEEAMITANICAGRALREHFGFGVFNT 418
Query: 404 PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAA------------IDFR-------- 443
P+ D + G V + ++ I +A +D R
Sbjct: 419 HAGFHPEKMADAVELINGHGGNVTAESLETIEGFSALRRWLNEQETTYLDNRIRKYQSYS 478
Query: 444 ----KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEG 493
P H +GL Y +TSPIR+Y D++ H +KA +RGE + ++ G
Sbjct: 479 EIGNAPAPHFAMGLDVYATWTSPIRKYGDMVNHRLLKAIIRGEDAAQTPDEMIG 532
>gi|410459051|ref|ZP_11312805.1| ribonuclease R [Bacillus azotoformans LMG 9581]
gi|409930757|gb|EKN67752.1| ribonuclease R [Bacillus azotoformans LMG 9581]
Length = 784
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 156/339 (46%), Gaps = 44/339 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L NR+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ GS DK
Sbjct: 242 DELTNRRDLRDQTIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVSYYVTEGSAIDK 301
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A RGTS++L PM P +L+ SL ++ + ++S+G + + + S+
Sbjct: 302 EAFNRGTSIYLVDRVIPMIPHRLSNGICSLNPQVDRLTMSCEMEINSNGEVVSHEIFQSV 361
Query: 300 IKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLE 351
IK T +TY +++ E E ++ E A + + R ++GAID E
Sbjct: 362 IKTTERMTYSDVNKIIDDKDPELLEKYKPLVPMFLLMDELAEILRKKRFERGAIDFDFKE 421
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
++ V P +I + +++ RL+ + M++ E +A + + NL YR
Sbjct: 422 AKVLVDEYGKPTDVI---IRERS-SGERLIEDFMLIANETVAEHFHWMNLPFIYRVHEDP 477
Query: 412 NID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAI 440
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 478 KEEKLSRFFEFITNFGYVVKGTANDVHPRALQQILEEVRGTPEEMVISTVMLRSMKQARY 537
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 538 D-AESLGHFGLSAEFYTHFTSPIRRYPDLIVHRLIRTYL 575
>gi|296185676|ref|ZP_06854085.1| ribonuclease R [Clostridium carboxidivorans P7]
gi|296049804|gb|EFG89229.1| ribonuclease R [Clostridium carboxidivorans P7]
Length = 678
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 162/349 (46%), Gaps = 57/349 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 194 EEEYERRKDLRDLTIVTIDGEDAKDLDDAVSLEKLPNGNYHLGVHIADVSNYVKDKNPLD 253
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++++
Sbjct: 254 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--VDRLTLSCFMEIDKTGKVVDHNIT 311
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK +TY T++L E+ + K++ E + + R+Q+GAID
Sbjct: 312 ESIIKTNERMTYTDVTKILRDTDEDVIKRYDYLVDTFKLMEELCGILYKKRIQRGAIDFD 371
Query: 349 TLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
E +I ++ P + +P + A R++ E M++C E IA + + N+ Y
Sbjct: 372 FEECKIILNELGKPIEIKPY-------ERAIANRIIEEFMLVCNETIAEHMFWANMPFVY 424
Query: 406 RGQPQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIM 435
R + + + + F H E V S+ +++ M
Sbjct: 425 RIHEEPDEEKLMHFNEFVHNLGYVVRMGQEVHPKALQDIVEKVKGKKEETVVSTLLLRSM 484
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGE 482
A P G GL Y FTSPIRRY DL+ H +K + G+
Sbjct: 485 MKARY---APECTGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEFINGQ 530
>gi|385830478|ref|YP_005868291.1| VacB family exoribonuclease R [Lactococcus lactis subsp. lactis
CV56]
gi|326406486|gb|ADZ63557.1| VacB family exoribonuclease R [Lactococcus lactis subsp. lactis
CV56]
Length = 762
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 163/346 (47%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 246 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 305
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 306 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNPR--INRLTQSCVMEISPEGRVINYQIS 363
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE A++ KI+ E + R ++GAID T
Sbjct: 364 QSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 424 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 479
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 480 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G++P
Sbjct: 540 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGEGKTP 584
>gi|255021111|ref|ZP_05293164.1| Ribonuclease R [Acidithiobacillus caldus ATCC 51756]
gi|340781742|ref|YP_004748349.1| ribonuclease R [Acidithiobacillus caldus SM-1]
gi|254969525|gb|EET27034.1| Ribonuclease R [Acidithiobacillus caldus ATCC 51756]
gi|340555895|gb|AEK57649.1| Ribonuclease R [Acidithiobacillus caldus SM-1]
Length = 742
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 171/383 (44%), Gaps = 53/383 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL HL + ID +A + DDA+ A ++G ++++ +AD Y+ PGS D++A K
Sbjct: 268 GRRDLRHLPLVTIDGADAKDFDDAVYAETREEGGFRLFVAIADVATYVRPGSALDEEARK 327
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+ P PM PE L+ SL + + L + G++ ++ ++++
Sbjct: 328 RGNSVYFPRRVIPMLPEVLSNGLCSLNPQVDRLCMVCEMELDAQGNLEQFRFARAVMRSQ 387
Query: 304 YMLTYESATELLHLN---LEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETR 353
TY+ +L + E EAE L+ L EA A + R +G I+ T ETR
Sbjct: 388 RRFTYDEVAAILGGDSDLREREAELVPHLETLQRLYEALA---RAREARGTIEFDTQETR 444
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
I E I+ L Q + A R++ E M+ A + + L + YR P+ N+
Sbjct: 445 IVYNEQGRIENIVPL----QRNVAHRMIEECMLAANVCAAQFFRIHELPMLYRVHPEPNV 500
Query: 414 D-----------VSAFAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV----------- 446
D + +P P RS+ + +++ RA A + +
Sbjct: 501 DKIEDLRRFLGELGVPVRIPARP-RSADLARVIEETRDRADASLIQTVILRSLSQAFYTV 559
Query: 447 ---RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL----RGESPPF-SAGQLEGMASIV 498
H L P Y FTSPIRRY DL+ H ++ L G P + S +L+ +
Sbjct: 560 DTSMHFGLAFPAYTHFTSPIRRYPDLIVHRGIQELLDSAAEGREPRWLSVAELKELGQHC 619
Query: 499 NMQTRIARRLSNTSLRYWIIEFL 521
+M R A S ++++ EF+
Sbjct: 620 SMTERRADEASREAVQWLKCEFM 642
>gi|421144401|ref|ZP_15604315.1| exoribonuclease II [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
gi|395489195|gb|EJG10036.1| exoribonuclease II [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
Length = 701
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 176/381 (46%), Gaps = 42/381 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A R
Sbjct: 245 RKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARNR 304
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+L PMFP++++ SL + E + + + G + Y V S+I+ +
Sbjct: 305 GNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIRSVH 364
Query: 305 MLTYESATELL--HLNLEEEAE-----LKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+TY++ +L NL E LK + E + + + +G+ID E ++ +
Sbjct: 365 RMTYKAVNGILDGDKNLINEYSDIYEMLKQMLELSKILRAKKHIRGSIDFELPELKVVLD 424
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------- 410
E E + Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 425 KDEKVEKV---YLKDRGE-GEKIIEDFMIAANETVAERIFWLELASIYRTHEKPDREKIV 480
Query: 411 ----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH-----G 449
NI F + E R+ ++ + K R+ G
Sbjct: 481 KLNEILSKFGYKIPNFDNIHPKQFQEIIERS-RNKETSMLVHKTILTSLKQARYTVEDIG 539
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL+ H + + + PF L+ +A ++ R+A +
Sbjct: 540 HFGLASSHYTHFTSPIRRYADLMVHRVLFSTIDNSIKPFKEVDLDEIAQHISKTERVAMK 599
Query: 508 LSNTSLRYWIIEFLRRQPKER 528
+ S+R ++E+++++ E+
Sbjct: 600 AEDESMRIKLVEYMQKRVGEK 620
>gi|410096552|ref|ZP_11291539.1| ribonuclease R [Parabacteroides goldsteinii CL02T12C30]
gi|409226516|gb|EKN19425.1| ribonuclease R [Parabacteroides goldsteinii CL02T12C30]
Length = 726
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 166/377 (44%), Gaps = 45/377 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L +G +V +H+AD T Y++P SL D++A R
Sbjct: 270 REDFRKVLTFTIDPKDAKDFDDALSVRQLDNGNWEVGVHIADVTHYVKPESLIDREAESR 329
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L + SLR E + L + ++ + + ++IK
Sbjct: 330 ATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAIFELDEEANVKKSRIGRTVIKSDR 389
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRL-QWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A ++ + + ++ +A A +L + R + GA++ E R ++ P
Sbjct: 390 RFTYEEAQLVIETGEGDYKDEILVLDALAKKLREKRFKNGAVNFDRFEVRFEIDETGKP- 448
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----------------------GSFNN 400
I+ Y+++ D A +L+ E M+L +A + N
Sbjct: 449 --ISTYIKESKD-ANKLIEEFMLLANRTVAEFVGKVPKGKTKKTFVYRIHDLPDPDKLEN 505
Query: 401 LA-------LPYRGQPQSNIDVS--------AFAHLPEGPVRSSAIVKIMRAAAIDFRKP 445
A + + S ID+S PE + + ++ M+ A +
Sbjct: 506 FAAFIRRFGYKMKTEGSSKIDISRNLNRLLDEVHDKPEENLIETLAIRSMQKARYT-TEN 564
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIA 505
+ H L Y FTSPIRRY D++ H ++ L G A E M+ ++A
Sbjct: 565 IGHYGLAFEYYTHFTSPIRRYPDMMVHRLLERYLEGGRSVVKAKYEEKCDHCSTME-QVA 623
Query: 506 RRLSNTSLRYWIIEFLR 522
S++Y +EF++
Sbjct: 624 ANAERASIKYKQVEFMQ 640
>gi|424787810|ref|ZP_18214574.1| ribonuclease R [Streptococcus intermedius BA1]
gi|422113564|gb|EKU17302.1| ribonuclease R [Streptococcus intermedius BA1]
Length = 779
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 157/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R DL + + ID +A +LDDA+ +L +G ++ +H+AD + Y++ GS
Sbjct: 242 SKKDFEGRLDLRNEITFTIDGADAKDLDDAVHIKKLSNGHFELGVHIADVSYYVQEGSEL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + +++V
Sbjct: 302 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDQKGRVVKHTV 359
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKI-------LSEAAALRLQWRLQQGAIDTA 348
++IK T+ +TY +++ + E+ K ++E A+ R ++GA++
Sbjct: 360 TQTVIKTTFRMTYSDVNDIITGDKEKRTAFKTIVPSIEQMTELHAILETMRFKRGALNFD 419
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P II Q A R++ M++ E +A + + NL YR
Sbjct: 420 TKEAKILVNKTGRPVDIILR----QRGVAERMIESFMLVANETVAEHFARLNLPFLYRIH 475
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S SA+ IM+A + V
Sbjct: 476 EEPKAEKVQKFIDYASTFGVRVYGTANSISQSALQDIMKAVHGQSYEEVLSMMLLRSMQQ 535
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 536 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 573
>gi|418038055|ref|ZP_12676404.1| Hydrolase acting on ester bonds [Lactococcus lactis subsp. cremoris
CNCM I-1631]
gi|354693733|gb|EHE93466.1| Hydrolase acting on ester bonds [Lactococcus lactis subsp. cremoris
CNCM I-1631]
Length = 817
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 163/346 (47%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 253 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RINRLTQSCVMEISPEGRVINYQIS 370
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE A++ KI+ E + R ++GAID T
Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G++P
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGEGKTP 591
>gi|328948707|ref|YP_004366044.1| ribonuclease II [Treponema succinifaciens DSM 2489]
gi|328449031|gb|AEB14747.1| ribonuclease II [Treponema succinifaciens DSM 2489]
Length = 647
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 144/286 (50%), Gaps = 21/286 (7%)
Query: 194 YAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTA 253
YAID + + DDA++ DG+ ++IH+ADP ++P S DK+A RG ++++P
Sbjct: 277 YAIDNAWSTDPDDAVAF----DGKY-LWIHIADPASTVQPDSPIDKNARARGATLYIPEG 331
Query: 254 TYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATE 313
M E +E +L E A++ ++L +G+I + SV +++K L+YE A +
Sbjct: 332 AARMLCES-CLEDYALGLKEKSRALSFRILLDENGAIEDCSVFKTLVK-VKRLSYEQADD 389
Query: 314 LLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQ 373
L+ E ELK L A ++ R + GA+ + E I V PE + I V +
Sbjct: 390 LM-----ESEELKPLFSIAWKNVERRKKSGAVQISMPEVHISV-EPETKKVSIEPLVHPK 443
Query: 374 ADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVK 433
+ +R EMM+L GE A + N + P+ Q I +PEG + +
Sbjct: 444 SSEMIR---EMMLLAGEGAAKFAFKNQIPFPFVSQEAPVIP----DDVPEGLAGQFRLRR 496
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
MR ++ P H LGL Y Q TSP+RRY DL+AH Q++A L
Sbjct: 497 CMRKRSVGV-TPGMHCALGLNMYSQVTSPLRRYGDLIAHIQLRAFL 541
>gi|359414768|ref|ZP_09207233.1| ribonuclease R [Clostridium sp. DL-VIII]
gi|357173652|gb|EHJ01827.1| ribonuclease R [Clostridium sp. DL-VIII]
Length = 727
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 166/380 (43%), Gaps = 55/380 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL LK+ ID ++A +LDDA+S +L +G K+ +H+AD T Y++ + D
Sbjct: 243 EEEYKGRRDLRDLKMVTIDGEDAKDLDDAVSIEKLSNGNYKLGVHIADVTHYVKENNPLD 302
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P KL+ SL + +T+S + D G + + +
Sbjct: 303 KEALKRATSVYLIDRVVPMLPRKLSNGICSLNPK--VDRLTLSCFMEIDHKGKVVNHEIV 360
Query: 297 NSIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTA 348
SIIK +TY T++L N EE + K++ E + + R ++GAID
Sbjct: 361 ESIIKTNERMTYTDVTKILRDNDEELIKRYDYLYEDFKMMEELCKILREKRTRRGAIDFE 420
Query: 349 TLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
E +I ++ P + +P + + + R++ E M+ E +A + + +L Y
Sbjct: 421 IAEAKITLNELGKPIEIKPY-------EREISNRMIEEFMLAANETVAEHMFWTHLPFVY 473
Query: 406 RGQPQSNIDVSAFAHLPE----------------------------GPVRSSAIVKIMRA 437
R N D A E G + + ++
Sbjct: 474 R--IHENPDEEKLAKFKEFVYNLGYNVHWTEEIVPKSFQEILEKVKGKNEETVVSTLLLR 531
Query: 438 AAIDFR-KPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGM 494
+ + + P G GL Y FTSPIRRY DL H +K L GE +L+ +
Sbjct: 532 SMMQAKYAPECSGHFGLAAQYYCHFTSPIRRYPDLQIHRIIKEYLHGEMDEKRINKLKNI 591
Query: 495 ASIVNMQTRIARRLSNTSLR 514
Q+ R + + R
Sbjct: 592 VGYAAKQSSEMERKAQDAER 611
>gi|410027787|ref|ZP_11277623.1| RNAse R [Marinilabilia sp. AK2]
Length = 731
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 178/395 (45%), Gaps = 52/395 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + NR+D+ + + ID +A + DDA+S +L++G ++ +H+AD T Y++P + ++
Sbjct: 265 DEIKNRRDMRDIPTFTIDPVDAKDFDDAISYRKLENGNYEIGVHIADVTHYVKPKTKLEQ 324
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDN 297
+A R TSV+L T PM PE+L+ SLR E + +T S V D + + +
Sbjct: 325 EAYDRATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEMDENADVLNHWIAR 382
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-----ELKILSEAAALRLQWRLQQGAIDTATLET 352
++ YE A E N++++ EL L+E A + R +GAI+ T+E
Sbjct: 383 TVTHSDRRFAYEEAQE----NIDQQKGDFYQELTFLNELAKKIRKRRFDKGAINFETVEV 438
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA---LPYRGQP 409
+ K+ + P + L ++++ D +L+ E M+L +A + N YR
Sbjct: 439 KFKLDDKGTP---LGLMIKERKD-IHKLIEEFMLLANRTVAEFIYNRNKGKDTFVYRIHD 494
Query: 410 QSNID--------VSAFAH---LPEGPVRSSAIVKIMR-------------------AAA 439
+I+ F H + EG S A+ ++M A A
Sbjct: 495 FPDIEKLETFSTFAKRFGHDIKISEGTKISKALNQLMDEIVGKPEQNVLEQLAIRSMAKA 554
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+P H L Y FTSPIRRY D++ H ++ L G P A E +
Sbjct: 555 KYTTEPKGHFGLAFKHYTHFTSPIRRYPDMMVHRLLQHYLDGGKGP-DAEAWEDKCIHSS 613
Query: 500 MQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
+ + A S++Y +E++ +E+ Y +I
Sbjct: 614 EREKRAADSERASIKYKQVEYM-ALAEEKDYEGII 647
>gi|225849742|ref|YP_002729976.1| ribonuclease R [Persephonella marina EX-H1]
gi|225646115|gb|ACO04301.1| ribonuclease R [Persephonella marina EX-H1]
Length = 704
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 41/333 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DLT + ID + A + DDA+ A+ + ++++H+AD + Y++ GS D++A +
Sbjct: 242 NRRDLTDQICFTIDPESARDHDDAV-AIEKEGNLYRLFVHIADVSYYVKEGSAIDREAFE 300
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LP M PE+LA E SLR E A T ++++ G + +Y + S+I
Sbjct: 301 RGNTYYLPEMALHMLPERLAAELCSLRPDEKKYAFTCEMLINRAGKVVDYDIYESVIISK 360
Query: 304 YMLTYESATELLHLN--LEEE-----AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
LTY+ A L+ + LE++ L+ + E A + ++ + ++G+ID E++I
Sbjct: 361 AKLTYDEALRLIVGDPALEKKYPDLVKPLRYMEELAKILMKAKEKRGSIDFDMPESKILF 420
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
DP ++ + A R++ E MI+ E +A + YR + ++D V
Sbjct: 421 TETGDPYDVVPY----ERHLAHRIIEEFMIIANETVARFMEEKGYPFIYRTHEEPDLDKV 476
Query: 416 SAFAHLPEG---------PVRSSAIVKIMRAA------------AIDFRKPVRH-----G 449
F L G + I KI+ A A+ K ++ G
Sbjct: 477 IKFVDLVAGLGYDVSYPEKITPKFIQKIIEKATGTPEENLIRFMALRTMKQAKYTVENIG 536
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
GL Y FTSPIRRY D+ H +K +R
Sbjct: 537 HFGLASDCYTHFTSPIRRYADINVHRMLKKAIR 569
>gi|392969383|ref|ZP_10334798.1| ribonuclease R [Fibrisoma limi BUZ 3]
gi|387841577|emb|CCH56856.1| ribonuclease R [Fibrisoma limi BUZ 3]
Length = 811
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 176/395 (44%), Gaps = 46/395 (11%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R+D+ + + ID +A + DDALS L +G ++ +H+AD T Y++PG+
Sbjct: 294 TETDLKGRRDIREVTTFTIDPVDAKDFDDALSVQILDNGHFEIGVHIADVTHYVKPGTQL 353
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A +R TSV+L PM PEKL+ SLR E + +T S V + + +
Sbjct: 354 EEEAFRRATSVYLVDRVVPMLPEKLSNNLCSLRPNE--DKLTFSAVFEMTPEAKVVKEWF 411
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRI 354
++I +YE A E+L+ + E L A +L+ R + GAI+ T+E R
Sbjct: 412 GRTVIHSNRRFSYEEAQEILNTGQGDYLEELRLLNELAYKLRDVRFKNGAINFETVEVRF 471
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------GSFNNLAL---- 403
K+ P +++Y + + D +L+ E M+L + +A + G N +
Sbjct: 472 KLDENGVP---LSVYPKIRQD-TNKLIEEFMLLANKRVAEFVHSLSKPGQENTMVYRIHE 527
Query: 404 -PYRGQPQSNIDVSAF---------AHL--------------PEGPVRSSAIVKIMRAAA 439
P + Q D + HL PE + V+ M A
Sbjct: 528 GPDEAKLQQFADFAGRLGYKLKLDDEHLSGSMNRFMDSIEGKPEQNMLQQLAVRTMSKAR 587
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ + H L Y FTSPIRRY D++AH ++ L + P + E +
Sbjct: 588 YS-TEDLGHFGLAFRRYSHFTSPIRRYPDMMAHRLLQHYL-DKGKPADRDEYEDKCRHSS 645
Query: 500 MQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
+ R+A S++Y +EF+ R +R + +I
Sbjct: 646 ERERMAAEAERASIKYKQVEFMSRMDPQRTFEGVI 680
>gi|404449774|ref|ZP_11014762.1| RNAse R [Indibacter alkaliphilus LW1]
gi|403764621|gb|EJZ25514.1| RNAse R [Indibacter alkaliphilus LW1]
Length = 730
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 43/379 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R+D+ + + ID +A + DDA+S RL++G +++ +H+AD T +++P ++ +
Sbjct: 264 EQEISKRRDMRDIPTFTIDPSDAKDFDDAISYRRLENGNLEIGVHIADVTHFVKPKTMLE 323
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A R TSV+L T PM PE+L+ SLR E + +T S V D + + +
Sbjct: 324 KEAYHRATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEMDENADVLNHWIG 381
Query: 297 NSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
++ YE A E + + +EL +L+ A + R +GA++ T+E + K
Sbjct: 382 RTVTHSDRRFAYEEAQECIDKQEGDFYSELTLLNNLAKKIRKRRFDKGAVNFETVEVKFK 441
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA---LPYRGQPQSN 412
+ P + L ++++ D +L+ E M+L +A + N YR +
Sbjct: 442 LDEKGTP---LGLMIKERKD-IHKLIEEFMLLANRTVAEFIFNKNKGADTFVYRIHDHPD 497
Query: 413 ID--------VSAFAH---LPEGPVRSSAIVKIMR-------------------AAAIDF 442
+ F H + EG S A+ K+M A A
Sbjct: 498 SERLETFSNFAKKFGHEIEIGEGVRISKALNKLMDEIAGKPEQNVLEQLAIRSMAKAKYT 557
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQT 502
+P H L Y FTSPIRRY D++ H ++ L G P + E +
Sbjct: 558 TEPKGHFGLAFKHYTHFTSPIRRYPDMMVHRLLQHYLEGGKSPEADPWEEKCLHSSEREK 617
Query: 503 RIARRLSNTSLRYWIIEFL 521
R A S++Y +EF+
Sbjct: 618 RAADS-ERASIKYKQVEFM 635
>gi|399888675|ref|ZP_10774552.1| ribonuclease R [Clostridium arbusti SL206]
Length = 756
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 174/378 (46%), Gaps = 50/378 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL +K+ ID ++A +LDDA+S +L +G + +H+AD + Y+ + D
Sbjct: 238 EEEYKKRKDLRDIKMVTIDGEDAKDLDDAVSLQKLDNGNYYLGVHIADVSNYVREKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+ RGTSV+L PM P KL+ SL A++ + + ++G + + + S
Sbjct: 298 KEALLRGTSVYLIDRVIPMLPRKLSNGICSLNPKVDRLALSCFMEIDNNGKVINHDIFES 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEA---------ELKILSEAAALRLQWRLQQGAIDTAT 349
IIK +TY T++L N ++E + + + + + R+ +GAID
Sbjct: 358 IIKTNERMTYTDVTKILK-NEDKEVIKRYDYLYDDFIAMGKLCDILHKRRMNRGAIDFDF 416
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E++I + P I++ ++A A R++ E M++C E IA + + NL YR
Sbjct: 417 QESKIILNEQGKP---IDIKPYERA-IANRVIEEFMLVCNETIAEHMFWTNLPFVYRIHE 472
Query: 410 QSNID----VSAFAH---------------------------LPEGPVRSSAIVKIMRAA 438
+ + + FAH E V S+ +++ ++ A
Sbjct: 473 DPDTEKLEHFNEFAHNLGYVVKWGSSKVHPKELQKIIEEVKDKKEETVVSTLLLRSLKQA 532
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
P G GL Y FTSPIRRY DL+ H +K L G + +L G+
Sbjct: 533 RY---SPECVGHFGLAAKYYCHFTSPIRRYPDLMIHRIIKEFLHGNIDGERSKKLIGIVD 589
Query: 497 IVNMQTRIARRLSNTSLR 514
++Q+ R++ + R
Sbjct: 590 YASVQSSERERVAQDAER 607
>gi|302670656|ref|YP_003830616.1| ribonuclease R Rnr [Butyrivibrio proteoclasticus B316]
gi|302395129|gb|ADL34034.1| ribonuclease R Rnr [Butyrivibrio proteoclasticus B316]
Length = 804
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 162/348 (46%), Gaps = 49/348 (14%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
Q +E +++ R DL ++++ ID ++A +LDDA+S + G + +H+AD T Y++ S
Sbjct: 192 QISEADMMGRTDLRNVQMVTIDGEDAKDLDDAVSLTIDEKGLYHLGVHIADVTNYVQENS 251
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D++A+KRGTSV+L PM P +L+ SL GE A++ + + G + ++ +
Sbjct: 252 ALDREALKRGTSVYLVDRVIPMLPHRLSNGICSLNHGEDRLALSCLMTIDKSGVVIDHDI 311
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDT 347
S+I ++Y S ++L EE E + +++ +AL + R +GAID
Sbjct: 312 VESVINVDERMSYTSVAKILEDEDAEEIEKYSELVPMFRQMADLSALLRKKREDKGAIDF 371
Query: 348 ATLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
ET+I + NP D P Q + A +L+ + M+ E +A + +
Sbjct: 372 DFPETKIVLDEAGNPVDILP-------RQRNTATKLIEDFMLAANETVAEHFYYLQSPFV 424
Query: 405 YRGQPQSNID--------VSAFAHL----PEGPVRSSAIVKIMR------AAAIDFRKPV 446
YR Q + + VS F H + V+ + K+++ A+ R +
Sbjct: 425 YRIHEQPDPEKISTLSAFVSNFGHHIRMRKDVGVKPKELQKLLKQIEGSKEEAVICRMTL 484
Query: 447 R-------------HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
R H L Y FTSPIRRY DL H +K LRG
Sbjct: 485 RSMMQAKYSTECTGHFGLAFDYYCHFTSPIRRYPDLQIHRIIKDHLRG 532
>gi|298374284|ref|ZP_06984242.1| ribonuclease R [Bacteroides sp. 3_1_19]
gi|298268652|gb|EFI10307.1| ribonuclease R [Bacteroides sp. 3_1_19]
Length = 728
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 164/382 (42%), Gaps = 54/382 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 272 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 392 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 451
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 452 ---VRVYFKVSKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 502
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 503 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 562
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+ + H L Y FTSPIRRY D++ H ++ L G + E + +
Sbjct: 563 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVHRLLERYLAGGRSVIQK-KYEDLCDHCSS 620
Query: 501 QTRIARRLSNTSLRYWIIEFLR 522
++A S++Y +EF++
Sbjct: 621 MEQVAANAERASIKYKQVEFMQ 642
>gi|373956721|ref|ZP_09616681.1| ribonuclease R [Mucilaginibacter paludis DSM 18603]
gi|373893321|gb|EHQ29218.1| ribonuclease R [Mucilaginibacter paludis DSM 18603]
Length = 711
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 176/400 (44%), Gaps = 43/400 (10%)
Query: 161 PGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKV 220
P + D + IS+ + E + RKD + + ID +A + DDALS L +G ++
Sbjct: 234 PAEVEHDAEAISDIITPEE--IAKRKDFRDVLTFTIDPFDAKDFDDALSFKYLDNGNYEI 291
Query: 221 YIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV 280
IH+AD + YI P S DK+A +RGTSV+L PM PE+L+ SLR E +
Sbjct: 292 GIHIADVSHYIIPDSPLDKEAFERGTSVYLVDRVIPMLPERLSNGLCSLRPNEDKLCFSA 351
Query: 281 SVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELL-HLNLEEEAELKILSEAAALRLQWR 339
L + + +II TYE E++ + + E E+ IL++ A +
Sbjct: 352 VFELDQNAFVINEWFGKTIIHSNRRFTYEEVQEIIENGDGEYIKEITILNQLAYQLRDRK 411
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------ 393
+ GAI T E + K+ P I +YV+++ D A +L+ + M+L +A
Sbjct: 412 FKNGAISFETTEVKFKLDASGKP---IGVYVKERKD-AHKLIEDYMLLANRKVAEFVAKK 467
Query: 394 --------------------TYGSFNNLA--LPYRGQPQSNIDVS-AFAHL---PEGPVR 427
T F A Y+ +S+ +++ + HL EG
Sbjct: 468 AKGKNKYTFVYRSHDSPKQETLAGFAQFAARFGYKINTKSDKEIARSLNHLMEDVEGKKE 527
Query: 428 SSAIVKIM---RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ + ++ A AI K H L Y FTSPIRRY D++ H ++ L G
Sbjct: 528 QNVLTQLAIRSMAKAIYTTKKTSHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDG-GK 586
Query: 485 PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQ 524
+A Q E + + + A +S++Y E+L+ Q
Sbjct: 587 SVNAEQYEVLCVHSSQMEKKAADAERSSVKYKQAEYLKDQ 626
>gi|256838702|ref|ZP_05544212.1| ribonuclease R [Parabacteroides sp. D13]
gi|256739621|gb|EEU52945.1| ribonuclease R [Parabacteroides sp. D13]
Length = 727
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 164/382 (42%), Gaps = 54/382 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 271 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 331 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 390
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 391 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 450
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 451 ---VRVYFKISKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 501
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 502 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 561
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+ + H L Y FTSPIRRY D++ H ++ L G + E + +
Sbjct: 562 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVHRLLERYLAGGRSVIQK-KYEDLCDHCSS 619
Query: 501 QTRIARRLSNTSLRYWIIEFLR 522
++A S++Y +EF++
Sbjct: 620 MEQVAANAERASIKYKQVEFMQ 641
>gi|189464648|ref|ZP_03013433.1| hypothetical protein BACINT_00991 [Bacteroides intestinalis DSM
17393]
gi|189436922|gb|EDV05907.1| ribonuclease R [Bacteroides intestinalis DSM 17393]
Length = 714
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 175/382 (45%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D ++ + ID +A + DDALS +++DG +V +H+AD T Y+ GS+ DK
Sbjct: 254 EEIAKREDFRNVTTFTIDPKDAKDFDDALSIRKIKDGLWEVGVHIADVTHYVTEGSIIDK 313
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V ++ G + + V +++
Sbjct: 314 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEINEKGDVKDSRVVHTV 373
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
IK TYE A +++ + +EE L + + A ALR Q R GAI+ E + ++
Sbjct: 374 IKSDRRFTYEEAQQVIETKEGDFKEEI-LMLDTIAKALR-QKRFVSGAINFDRYEVKFEI 431
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y + D A +LV E M+L +A G N A PYR
Sbjct: 432 DAKGKP---ISVYFKVSQD-ANKLVEEFMLLANRTVAEKIGRVPKNKKAKVFPYRIHDLP 487
Query: 408 QPQ--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAA 439
P+ + DVS + HL E + + ++ M+ A
Sbjct: 488 DPEKLDNLAQFIARFGYKLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKAR 547
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H + L G S + E + +
Sbjct: 548 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTKYLAG-GRSVSETKYEDLCDHSS 605
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 606 NMEQIAANAERASVKYKQVEFM 627
>gi|423333672|ref|ZP_17311453.1| ribonuclease R [Parabacteroides distasonis CL03T12C09]
gi|409226982|gb|EKN19884.1| ribonuclease R [Parabacteroides distasonis CL03T12C09]
Length = 727
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 164/382 (42%), Gaps = 54/382 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 271 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 331 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 390
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 391 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 450
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 451 ---VRVYFKISKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 501
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 502 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 561
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+ + H L Y FTSPIRRY D++ H ++ L G + E + +
Sbjct: 562 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVHRLLERYLAGGRSVIQK-KYEDLCDHCSS 619
Query: 501 QTRIARRLSNTSLRYWIIEFLR 522
++A S++Y +EF++
Sbjct: 620 MEQVAANAERASIKYKQVEFMQ 641
>gi|403414903|emb|CCM01603.1| predicted protein [Fibroporia radiculosa]
Length = 1469
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 154/347 (44%), Gaps = 51/347 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL + + + ID D A +LDDALS DG V +HVAD + +++P + D+DA KR
Sbjct: 896 RKDLRNERAFTIDPDTAKDLDDALSVKVNDDGTYDVAVHVADVSYFVKPNTALDRDARKR 955
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P L+ + SL GE A +V + DG + + ++IK +
Sbjct: 956 ATSVYLVQRAVPMLPPALSEQMCSLVPGEERLAFSVIFTMTKDGKVLKKWFGKTLIKTSA 1015
Query: 305 MLTYESATELL------------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLET 352
L+Y A ++ H + +++++ E A R Q G I + +L+
Sbjct: 1016 KLSYTDAQSIIDGHAVEFEVAPEHAVADVSKDVRVIHELAKQVRARRFQIGCIKSQSLKL 1075
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSFNNLALPYRGQPQ 410
K+ +D PI E A LV E M+L A+A +F+ AL R P
Sbjct: 1076 TFKLD--DDGVPIDCSQYERTE--AHHLVEEFMLLTNVAVAQQIAVNFSEQALLRRHDPP 1131
Query: 411 SNIDVSAFAHLPE---------GPV-----------------------RSSAIVKIMRAA 438
++AF E P+ ++S+ K A
Sbjct: 1132 IERRLAAFVERAERMGFKVDASSPITLMKSLDAVNDPSARKILELFLRKASSAAKYFCAG 1191
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPP 485
+D K H L +P Y FTSPIRRY D+L H Q+ + L+G + P
Sbjct: 1192 MLDIAK-YGHFALNIPLYTHFTSPIRRYADILVHRQLDSILQGGAEP 1237
>gi|301307807|ref|ZP_07213763.1| ribonuclease R [Bacteroides sp. 20_3]
gi|423339600|ref|ZP_17317340.1| ribonuclease R [Parabacteroides distasonis CL09T03C24]
gi|300834150|gb|EFK64764.1| ribonuclease R [Bacteroides sp. 20_3]
gi|409230254|gb|EKN23121.1| ribonuclease R [Parabacteroides distasonis CL09T03C24]
Length = 728
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 164/382 (42%), Gaps = 54/382 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 272 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 392 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 451
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 452 ---VRVYFKVSKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 502
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 503 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 562
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+ + H L Y FTSPIRRY D++ H ++ L G + E + +
Sbjct: 563 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVHRLLERYLAGGRSVIQK-KYEDLCDHCSN 620
Query: 501 QTRIARRLSNTSLRYWIIEFLR 522
++A S++Y +EF++
Sbjct: 621 MEQVAANAERASIKYKQVEFMQ 642
>gi|150009927|ref|YP_001304670.1| ribonuclease R [Parabacteroides distasonis ATCC 8503]
gi|149938351|gb|ABR45048.1| ribonuclease R [Parabacteroides distasonis ATCC 8503]
Length = 728
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 164/382 (42%), Gaps = 54/382 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 272 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 392 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 451
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 452 ---VRVYFKVSKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 502
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 503 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 562
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+ + H L Y FTSPIRRY D++ H ++ L G + E + +
Sbjct: 563 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVHRLLERYLAGGRSVIQK-KYEDLCDHCSS 620
Query: 501 QTRIARRLSNTSLRYWIIEFLR 522
++A S++Y +EF++
Sbjct: 621 MEQVAANAERASIKYKQVEFMQ 642
>gi|387928704|ref|ZP_10131382.1| ribonuclease R [Bacillus methanolicus PB1]
gi|387588290|gb|EIJ80612.1| ribonuclease R [Bacillus methanolicus PB1]
Length = 773
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 163/345 (47%), Gaps = 54/345 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + NR+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ G+ D
Sbjct: 244 ESEIANRRDLRDEMIVTIDGVDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVREGTPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
++A +RGTSV+L PM P +L+ SL + +T+S ++ ++DG + + +
Sbjct: 304 REAGERGTSVYLVDRVIPMIPHRLSNGICSLNPK--VDRLTLSCIMEINADGEVVNHEIF 361
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE---------LKILSEAAALRLQWRLQQGAIDT 347
S+IK T +TY ++L ++ +EE +++ E A++ R+++GAID
Sbjct: 362 QSVIKTTERMTYHDVNKIL-VDKDEELRQRYEPLVPMFEMMEELASILRNKRMKRGAIDF 420
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V P + V + A RL+ E M+ E +A + + ++ YR
Sbjct: 421 DFKEAKVIVDEEGKPTDV----VIRERSVAERLIEEFMLAANETVAEHFHWLDVPFIYRI 476
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
D ++ F ++ PE V S+ +++ M+
Sbjct: 477 HEDPKEDKLRRFFEFITNFGYIVKGTANHVHPRALQEIIEEVQGKPEEMVVSTVMLRSMQ 536
Query: 437 AAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
A KP G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 537 QAKY---KPENLGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYL 578
>gi|255534171|ref|YP_003094542.1| Ribonuclease R [Flavobacteriaceae bacterium 3519-10]
gi|255340367|gb|ACU06480.1| Ribonuclease R [Flavobacteriaceae bacterium 3519-10]
Length = 718
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 172/397 (43%), Gaps = 48/397 (12%)
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
DI + +E + R+D+ + + ID +A + DDALS +L +G ++ +H+AD +
Sbjct: 249 DIDRTIHDSE--VAKRRDMRGICTFTIDPKDAKDFDDALSIQKLNNGNWEIGVHIADVSH 306
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD-- 287
Y++PG+L D +A R TSV+L PM PE L+ + SLR E + T S V D
Sbjct: 307 YVQPGTLLDDEAYDRATSVYLVDRVVPMLPEVLSNDVCSLRPNE--DKYTFSAVFEMDEN 364
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAID 346
+ ++I YE A E + + A E+ L A + + R++ GAI
Sbjct: 365 ADVVNEWFGRTVIHSDRRFAYEEAQERIETGTGDLAEEILTLDRLAKILRKERIRNGAIT 424
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP-- 404
E R + E+ EP I +Y + D + L+ E M+L ++ + S N P
Sbjct: 425 FDRSEVRFNL--DENSEP-IGVYFKISKD-SNHLIEEFMLLANRKVSEFISLNRKGEPTA 480
Query: 405 ----YR-----------------GQPQSNIDVSAFAHLPEGPVRSSAIVK---------- 433
YR G +D++ + E R VK
Sbjct: 481 NTFIYRIHDDPDPTKLEALRDFVGTFGYQMDLANTKKVAESLNRLLQDVKGKGEENMIET 540
Query: 434 -IMR--AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQ 490
MR + A+ P+ H LG Y FTSPIRRY DL+AH ++ L G P +
Sbjct: 541 LAMRSMSKAVYSTNPIGHYGLGFDFYSHFTSPIRRYPDLIAHRLLQHYLDGGKSP-NKQD 599
Query: 491 LEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKE 527
E + + R+A S+++ ++F+ + E
Sbjct: 600 YEEKSKHCSAMERLAADAERDSIKFMQVKFMEKHLGE 636
>gi|239828270|ref|YP_002950894.1| ribonuclease R [Geobacillus sp. WCH70]
gi|239808563|gb|ACS25628.1| ribonuclease R [Geobacillus sp. WCH70]
Length = 762
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 46/342 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R+DL + ID ++A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 240 SEKDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINERGEVVSHEIFQ 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK---------ILSEAAALRLQWRLQQGAIDTA 348
S+I+ T +TY ++L ++ +EE K +++E A + R+++GAID
Sbjct: 360 SVIRTTERMTYSDVNKIL-VDKDEELRKKYEPLVPMFELMAELAEILRNKRMKRGAIDFD 418
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V P + V + A RL+ E M++ E +A + + N+ YR
Sbjct: 419 FKEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLVANETVAEHFHWLNVPFIYRVH 474
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
+ ++ F ++ PE V S+ +++ M+
Sbjct: 475 EDPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQEILEAVRGEPEEMVISTVMLRSMKQ 534
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A D +G L Y FTSPIRRY DL+ H ++ L
Sbjct: 535 ARYDAESLGHYG-LSTDFYTHFTSPIRRYPDLIVHRLIRTYL 575
>gi|415886855|ref|ZP_11548598.1| ribonuclease R [Bacillus methanolicus MGA3]
gi|387585506|gb|EIJ77831.1| ribonuclease R [Bacillus methanolicus MGA3]
Length = 773
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 164/344 (47%), Gaps = 52/344 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + NR+DL + ID ++A +LDDA++ RL++G K+ +H+AD + Y+ G+ D
Sbjct: 244 EREIANRRDLRDEMIVTIDGEDAKDLDDAVTVSRLENGNYKLGVHIADVSYYVREGTPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
++A KRGTSV+L PM P +L+ SL + +T+S ++ + DG + + +
Sbjct: 304 REAEKRGTSVYLVDRVIPMIPHRLSNGICSLNPK--VDRLTLSCIMEINPDGEVVNHEIF 361
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAE-----LKILSEAAALRLQWRLQQGAIDTA 348
S+IK T +TY ++L L + E +++ E A++ R+++GAID
Sbjct: 362 ESVIKTTERMTYNDVNKILVDKDEALRQRYEPLVPMFEMMEELASILRNKRMKRGAIDFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V P ++ + +++ A RL+ E M+ E +A + + ++ YR
Sbjct: 422 FKEAKVIVDEEGKP---TDVMIRERS-VAERLIEEFMLAANETVAEHFHWLDVPFIYRIH 477
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
D ++ F ++ PE V S+ +++ M+
Sbjct: 478 EDPKEDKLRRFFEFITNFGYIVKGTANHVHPRALQEIIEEVQGKPEEMVVSTVMLRSMQQ 537
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
A KP G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 538 AKY---KPESLGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYL 578
>gi|225175329|ref|ZP_03729324.1| ribonuclease R [Dethiobacter alkaliphilus AHT 1]
gi|225169081|gb|EEG77880.1| ribonuclease R [Dethiobacter alkaliphilus AHT 1]
Length = 709
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 183/398 (45%), Gaps = 51/398 (12%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+I F + A ++L R DL L + ID +A +LDDA+S + +G ++ +H+AD
Sbjct: 228 KEIKAFRRDLAPEDLEGRMDLRDLPMVTIDGADAKDLDDAVSLHQKDNGNWELGVHIADV 287
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
Y++ G+ DK+A RGTS++L PM P +L+ + SL A++V + L+
Sbjct: 288 GHYVKEGTALDKEAFHRGTSIYLVDRVIPMLPPELSNDLCSLNPQVDRLAMSVFMELNHQ 347
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELL---HLNLEEEAE-----LKILSEAAALRLQWR 339
G + + S+I+ +TY+ ++L NL + + + + E A + + R
Sbjct: 348 GKVVSHDFGPSVIRTQERMTYDDVRDILVDKDENLRKRYQPLVPMFEKMEEMAMILRKNR 407
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS-- 397
+GA+D A E ++K+ P I++ ++ M ++ E M++C E +A + S
Sbjct: 408 FDRGALDFAVPEVKVKLDEQGKP---IDIVPRPRSIAEM-IIEEFMLICNETVAEHFSRM 463
Query: 398 -----------------------FNNLALPYRGQPQSNIDVSAFAHL-------PEGPVR 427
+NL L +G P I A L PE V
Sbjct: 464 EVPFVYRVHEQPSEAKMQNFREFVHNLGLSLKGSP-DKIHSRALQALLDEVEGKPEERVV 522
Query: 428 SSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFS 487
++ +++ M+ A + +G L Y FTSPIRRY DL+ H ++ L+G P
Sbjct: 523 NTLLLRTMQQARYSAHRSPHYG-LAAEYYSHFTSPIRRYPDLMIHRLMREYLQGMPPQKR 581
Query: 488 AGQL----EGMASIVNMQTRIARRLSNTSLRYWIIEFL 521
G++ E A +M+ R+A S+ +EF+
Sbjct: 582 LGKITKNNEAGADRASMRERLAMEAERESVDMKKVEFM 619
>gi|407979537|ref|ZP_11160350.1| ribonuclease R [Bacillus sp. HYC-10]
gi|407413823|gb|EKF35503.1| ribonuclease R [Bacillus sp. HYC-10]
Length = 780
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 162/343 (47%), Gaps = 50/343 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + + ID +A +LDDA++ +L DG+ K+ +H+AD + Y+ S D
Sbjct: 242 EKDLEGRRDLRNETIVTIDGADAKDLDDAVTVQKLDDGKYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ +V+ +G + ++ + S
Sbjct: 302 REAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMVIDQNGKVVKHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAIDT 347
+IK T +TY ++L ++++ EL + + + A + R+++GA+D
Sbjct: 362 VIKTTERMTYSDVNKIL---VDQDEELLDKYEPLVPMFQEMEKLAEILRDKRMERGAVDF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 419 DFKEAKVLV----DDEGVAKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 474
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ N + V+ F ++ PE V + +++ M+
Sbjct: 475 HEEPNPEKLQRFLEFVTTFGYIVKGTSTNIHPRALQSVLDAVRDQPEEVVIQTVMLRSMK 534
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A D + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 535 QAKYD-PESIGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|313675162|ref|YP_004053158.1| RNAse r [Marivirga tractuosa DSM 4126]
gi|312941860|gb|ADR21050.1| RNAse R [Marivirga tractuosa DSM 4126]
Length = 721
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 158/379 (41%), Gaps = 42/379 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R+D+ + ID ++A + DDA+S RL +G ++ IH+AD T Y++PG+L +
Sbjct: 258 EKEIAKRRDMRDTTTFTIDPEDAKDFDDAISFKRLDNGHYEIGIHIADVTYYVQPGTLLE 317
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A R TSV+L T PM PE+L+ SLR E + L +G+I +
Sbjct: 318 EEAFHRATSVYLVDRTIPMLPERLSNGLCSLRPNEDKFTFSAVFELDDNGTIHNEWFGRT 377
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
I YE A +L + + A EL L+ A R + GAI ++E + K+
Sbjct: 378 ITHSDRRFAYEEAQAILEARIGDHAEELHSLNSIAKNLKATRFKHGAIAFESVEVKFKLD 437
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYRGQ---- 408
P ++ +D A +LV E M+L +A + L YR
Sbjct: 438 ENGKPLGVVPKVRQD----AHKLVEEYMLLANRKVAEFIATKKKGDQKLTFVYRQHDYPD 493
Query: 409 PQSNIDVSAFAH--------------------------LPEGPVRSSAIVKIMRAAAIDF 442
P+ S FA PE V S ++ M A
Sbjct: 494 PEKLSTFSIFAKRFGHELEIEEKAVAKSLNSLMNDIQGKPEQNVLESLAIRSMAKAKYTT 553
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQT 502
+ G L Y FTSPIRRY D++ H ++ L + +A + E +
Sbjct: 554 KNSFHFG-LAFQYYTHFTSPIRRYPDVMVHRLLQHYL-DQGKSVNAEEFESKCLHSSEME 611
Query: 503 RIARRLSNTSLRYWIIEFL 521
+ A S++Y +EF+
Sbjct: 612 KRASDAERASIKYKQVEFM 630
>gi|254480922|ref|ZP_05094168.1| ribonuclease R [marine gamma proteobacterium HTCC2148]
gi|214038717|gb|EEB79378.1| ribonuclease R [marine gamma proteobacterium HTCC2148]
Length = 819
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 157/357 (43%), Gaps = 39/357 (10%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+ AE + LNR DL HL ID ++A + DDA+ G ++++ +AD Y+ PGS
Sbjct: 283 EPAEQDKLNRMDLRHLAFVTIDGEDARDFDDAVYCETASGGGWRLWVAIADVCHYVRPGS 342
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D++A KR TSV+ P PM PE L+ SL+ A+ + + G++ +Y
Sbjct: 343 ALDEEASKRATSVYFPERVVPMLPEALSNGLCSLKPAVDRLAMVCEMEISKAGALGKYQF 402
Query: 296 DNSIIKPTYMLTYESATELLH------LNLEEEAELKILSEAAALRLQWRLQQGAIDTAT 349
S+I LTY +L ++ E++L+ L + R +GAID T
Sbjct: 403 YESVIHSHARLTYTQVGAVLENGNHPDVDAGRESDLRRLHDLYKALRGARDVRGAIDFET 462
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
+ETRI + + + I+ + D A +L+ E M+ A A + N + + YR
Sbjct: 463 VETRIIFDDQKKIDAIVPVVRND----AHKLIEECMLCANVAAAGFFEANEVPMLYRVHE 518
Query: 410 QSN-------------IDVSAFAHLPEGPVRSSAIVK--------------IMRAAAIDF 442
N + +S + PV ++ ++R+ +
Sbjct: 519 GPNEEKLENLRKFLGELGLSLAGGVKPTPVHYQELLAEVKDRDDAHVIQTMLLRSLSQAV 578
Query: 443 RKPVRHGVLGL--PGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASI 497
+P +G GL Y FTSPIRRY DLL H ++ +R S +++G I
Sbjct: 579 YQPENNGHFGLHYDAYAHFTSPIRRYPDLLVHRGIRHRIRSTDKAISVHRIKGAEPI 635
>gi|339640975|ref|ZP_08662419.1| ribonuclease R [Streptococcus sp. oral taxon 056 str. F0418]
gi|339454244|gb|EGP66859.1| ribonuclease R [Streptococcus sp. oral taxon 056 str. F0418]
Length = 782
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 159/338 (47%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TERDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++S+
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHSI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ +IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQEIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|255012826|ref|ZP_05284952.1| ribonuclease R [Bacteroides sp. 2_1_7]
gi|410102247|ref|ZP_11297174.1| ribonuclease R [Parabacteroides sp. D25]
gi|409238969|gb|EKN31757.1| ribonuclease R [Parabacteroides sp. D25]
Length = 728
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 164/382 (42%), Gaps = 54/382 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 272 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 392 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 451
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 452 ---VRVYFKVSKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 502
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 503 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 562
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+ + H L Y FTSPIRRY D++ H ++ L G + E + +
Sbjct: 563 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVHRLLERYLAGGRSVIQK-KYEELCDHCSS 620
Query: 501 QTRIARRLSNTSLRYWIIEFLR 522
++A S++Y +EF++
Sbjct: 621 MEQVAANAERASIKYKQVEFMQ 642
>gi|108804441|ref|YP_644378.1| RNAse R [Rubrobacter xylanophilus DSM 9941]
gi|108765684|gb|ABG04566.1| RNAse R [Rubrobacter xylanophilus DSM 9941]
Length = 535
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 161/359 (44%), Gaps = 35/359 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL L ID ++A + DDA+S +R +DG ++++H+AD T Y++PG D+ A+
Sbjct: 101 ERRDLRRLPTVTIDGEDAKDFDDAISILR-EDGGYRLWVHIADVTHYVDPGGALDRQALY 159
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+LP PM P +L+ + SLR AVTV + + +G + + V S+I
Sbjct: 160 RGNSVYLPGTVAPMLPARLSADVCSLRPHADRAAVTVEISVSGEGEVRGWKVYRSLICSD 219
Query: 304 YMLTYESATELLHLNLE-EEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-- 360
LTYE+ L E E+ EL A L RL+ A LE ++ PE
Sbjct: 220 ARLTYEAVDAFLEGRGEIEQPELV----RTAFELSRRLKTNAAVRGKLE--LESREPEYE 273
Query: 361 -DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
D E + + PA L+ E+MIL +A A+ + S D+ A
Sbjct: 274 VDEEGVPVAASMRPSTPARELIEELMILANVCVARELRRRRGAVFRVHERPSPEDLELLA 333
Query: 420 H--------LPEGPVRSSAIVKIMRAAAIDF----------RKP--VRHGVLGLPGYVQF 459
+ P I +++++ A+ + P V H L L Y F
Sbjct: 334 ERLAAVGVRVEPTPENLGTIARMLKSRALGYLVLRSIPRALYSPGNVGHYGLALEDYTHF 393
Query: 460 TSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWII 518
TSPIRRY D+L H L G+ P + ++ S Q+ I R ++ W++
Sbjct: 394 TSPIRRYADVLVHR----ALLGDELPENLPEVAEHISEREWQSMICERTADEYTLMWLM 448
>gi|256844946|ref|ZP_05550404.1| ribonuclease R [Fusobacterium sp. 3_1_36A2]
gi|294785769|ref|ZP_06751057.1| ribonuclease R [Fusobacterium sp. 3_1_27]
gi|256718505|gb|EEU32060.1| ribonuclease R [Fusobacterium sp. 3_1_36A2]
gi|294487483|gb|EFG34845.1| ribonuclease R [Fusobacterium sp. 3_1_27]
Length = 701
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 176/381 (46%), Gaps = 42/381 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT+L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A R
Sbjct: 245 RKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARNR 304
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+L PMFP++++ SL + E + + + G + Y V S+I+ +
Sbjct: 305 GNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIRSVH 364
Query: 305 MLTYESATELL--HLNLEEEAE-----LKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+TY++ +L NL E LK + E + + + +G+ID E ++ +
Sbjct: 365 RMTYKAVNGILDGDKNLINEYSDIYEMLKQMLELSKILRAKKHIRGSIDFELPELKVVLD 424
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------- 410
E E + Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 425 KDEKVEKV---YLKDRGE-GEKIIEDFMIAANETVAERIFWLELASIYRTHEKPDREKIV 480
Query: 411 ----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH-----G 449
NI F + E R+ ++ + K R+ G
Sbjct: 481 KLNEILSKFGYKIPNFDNIHPKQFQEIIERS-RNKETSMLVHKTILTSLKQARYTVEDIG 539
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL+ H + + + PF L+ +A ++ R+A +
Sbjct: 540 HFGLASSHYTHFTSPIRRYADLMIHRVLFSTIDNSIKPFKEVDLDEIAQHISKTERVAMK 599
Query: 508 LSNTSLRYWIIEFLRRQPKER 528
+ S+R ++E+++++ E+
Sbjct: 600 AEDESVRIKLVEYMQKRVGEK 620
>gi|114778676|ref|ZP_01453488.1| exoribonuclease II [Mariprofundus ferrooxydans PV-1]
gi|114551038|gb|EAU53600.1| exoribonuclease II [Mariprofundus ferrooxydans PV-1]
Length = 707
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 169/374 (45%), Gaps = 50/374 (13%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
Q E ++ RKDL H+ ID ++A + DDA+ + +G + ++ +AD + Y+ P S
Sbjct: 235 QVLESDIKGRKDLRHIPFVTIDGEDARDFDDAVCVLPRGEG-FEAWVSIADVSHYVRPHS 293
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
DK+A+ R S + P PM PEKL+ SL +TV + ++G+ V
Sbjct: 294 ALDKEALARSNSFYFPDRVIPMLPEKLSNGLCSLNPHLPRLGMTVRMRFDANGTRRSIHV 353
Query: 296 DNSIIKPTYMLTYESATELLHLNLE---EEAELK-ILSEAAAL--RLQW-RLQQGAIDTA 348
S+I LTY A+ L E E+ EL+ +L +AA L +L+ R Q+GA+D
Sbjct: 354 YESVIHSQARLTYTQASAWLEERDETAVEKPELREMLDDAARLFRKLEKKRKQRGALDLD 413
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E R + + + ++++ V + + A RL+ EMM+ A+A Y + AL YR
Sbjct: 414 MPEVRALLQD----DVVVDI-VASERNIAQRLIEEMMLAANTAVAEYMDAHECALLYRIH 468
Query: 409 PQSN-----------IDVSAFAHLPEGPVRSSAIVK----------------------IM 435
P F LP+ + S + ++
Sbjct: 469 PAPERQAIETLNEFLAPFGLFVKLPKIKEKDSQVRPGDVQLVLEQSEGKPFAHVLHRLVL 528
Query: 436 RAAAIDFRKPVRHGVLGLP--GYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEG 493
R+ PV G GL Y FTSPIRRY DL+ H ++KA +RGE P + Q G
Sbjct: 529 RSMQQAKYTPVNVGHFGLAYDSYAHFTSPIRRYADLIVHRRLKALIRGEDP--NRVQPVG 586
Query: 494 MASIVNMQTRIARR 507
+ + +QT R
Sbjct: 587 TLADIGLQTSTQER 600
>gi|338997599|ref|ZP_08636294.1| exoribonuclease II [Halomonas sp. TD01]
gi|338765573|gb|EGP20510.1| exoribonuclease II [Halomonas sp. TD01]
Length = 657
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 44/348 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT + ID ++ ++DDAL L+ G ++ + +ADPT Y+E G +D
Sbjct: 198 DEGLTREDLTAQPFFTIDGEKTRDMDDALHVEALESGGWRLSVAIADPTAYVEEGHAADL 257
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A R +V+LP M PE+LA + SL +G+ A+ S+ +++DGS+ +Y +
Sbjct: 258 EARTRAFTVYLPGQNVTMLPEQLADDLCSLWEGQTRPALACSLDINADGSLGDYRFFAAN 317
Query: 300 IKPTYMLTYESATELLHL--------NLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
+K L Y+ ++ + N+ E+ LK L + R WR + + +
Sbjct: 318 VKSHAKLAYDRVSDWIDGQGDWAPADNVAEQ--LKALRDLTEARTAWRNEHALV----FK 371
Query: 352 TRIK-VANPEDPEPIINLYVEDQADPAMRLVSEMMI----LCGEAIATYGSFNNLALPYR 406
R V + ++ ++ + ED+ A R++ E MI C + +A + +
Sbjct: 372 DRPDYVFDLDEAGNVLGIRTEDRR-IANRMIEESMIAANACCADFLAKHIGHGIFNVHRA 430
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIM------RA------AAIDFR----------- 443
+P+ F E V A+ ++ RA A +D R
Sbjct: 431 FEPEKAESAQEFLATQEIEVAQEALTELAHYKELKRALESRDDAWLDARLRRFQGFTSMS 490
Query: 444 -KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQ 490
+P H LGLP Y +TSPIR+Y D++ H +K L+GE P A Q
Sbjct: 491 AQPGPHFGLGLPAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEASQ 538
>gi|167043789|gb|ABZ08480.1| putative RNB-like protein [uncultured marine microorganism
HF4000_APKG3D20]
Length = 671
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 111/417 (26%), Positives = 179/417 (42%), Gaps = 67/417 (16%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
Q + +L RKDL +D +A + DDALS L+ G ++V +H+AD + Y+ P S
Sbjct: 180 QVRQQDLKGRKDLRDRFTLTVDPIDARDFDDALSLHPLKGGNVEVGVHIADVSAYVAPES 239
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
DK+A +RG S +L PM P++L+ SL + E +V G++ + V
Sbjct: 240 AIDKEARRRGNSTYLVGEVVPMLPKQLSNGICSLVEAEDRLVKSVLFTFDPKGNVLGHHV 299
Query: 296 DNSIIKPTYMLTYESATELLH----------------------LNLEEEAELKILSEAAA 333
++I+ LTYE A L+ L + + K+L +
Sbjct: 300 TEAVIRSDKRLTYEQAKLLMDESDLSKVRSAKPPESRYSGKPGTTLSKLPDGKLLKLQST 359
Query: 334 LRLQW---------RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEM 384
LR W RL+ GA+D E +I V + +PE ++ L D + +L+ E
Sbjct: 360 LRNLWSFADELREQRLRHGALDLGGKEVKILVDDRGNPERMMRLV----NDESHQLIEEF 415
Query: 385 MILCGEAIATYGSFNNLALP--YR----GQPQSNIDVSAFA------------------- 419
M+L E +A L P +R P+ ++ +FA
Sbjct: 416 MLLANETVAK--ELRRLRRPAIHRVHDDPDPEKLDELRSFAAIFGISCGDLNHRKAMTAL 473
Query: 420 --HLPEGPVRSSAIVKIMRA--AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ P+ +K++R+ A P H L Y+ FTSPIRRY DL+ H +
Sbjct: 474 TSKIKNHPISQVLRIKLLRSLRKACYRVSPDGHYGLAKSDYLHFTSPIRRYADLVVHRII 533
Query: 476 KACLRG-ESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYR 531
+A LRG + S G LE +A V+ R + S++ ++ + R+ KE R
Sbjct: 534 EAQLRGSRTTAHSRGDLEKIAFHVSETERNSVDAERESVKTKLVAYYARELKENNVR 590
>gi|375254472|ref|YP_005013639.1| ribonuclease R [Tannerella forsythia ATCC 43037]
gi|363406269|gb|AEW19955.1| ribonuclease R [Tannerella forsythia ATCC 43037]
Length = 732
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 117/482 (24%), Positives = 203/482 (42%), Gaps = 79/482 (16%)
Query: 100 LLEDK-LENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWM--VYDQNGASCSIKPQQ- 155
+ EDK L N + L +++D+ L+ + + P+G KN + V D G + +
Sbjct: 183 VTEDKTLSNDIFIPREHLHGGRNNDKALVRIIEWPEGAKNPLGEVIDILGKAGDNNTEMH 242
Query: 156 ---VTFVVPGVEKFDHKDISNFL--QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSA 210
F +P ++ +N + + +++ R+D + + ID +A + DDALS
Sbjct: 243 AILAEFGLPYTYPEKVEEAANRIPTEITDEDRAGREDFRGVVTFTIDPKDAKDFDDALSL 302
Query: 211 MRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR 270
+L++G +V +H+AD T Y++PGS+ DK+A +R TSV+L T PM PE L SLR
Sbjct: 303 RKLENGLWEVGVHIADVTHYVKPGSIIDKEAYERATSVYLVDRTIPMLPESLCNNLCSLR 362
Query: 271 QGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILS 329
E +V ++ + I + +II+ TYE A ++ + + E+ L
Sbjct: 363 PNEEKLTFSVIFEMNDEAEILASRIGRTIIESDRRFTYEEAQNVIETGQGDYKDEVLTLH 422
Query: 330 EAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG 389
A R G+ID E + ++ P +N+Y ++ + A +L+ E M++
Sbjct: 423 HLAQQLRNIRFASGSIDFDRYEVKFEIDEKGKP---LNVYFKESKE-ANKLIEEFMLIAN 478
Query: 390 EAIA-------------------------------------------TYGS-------FN 399
A+A T GS N
Sbjct: 479 RAVAESMGKQPKGKTKKTFVYRVHEQPDPEKMKNFAGFIRRFGYKLKTDGSKSELTKGIN 538
Query: 400 NLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQF 459
NL +G+P+ N+ + + AI + +A + + H L P Y F
Sbjct: 539 NLLDKAQGKPEENL------------IETLAIRSMQKARYST--ENIGHYGLAFPYYSHF 584
Query: 460 TSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIE 519
TSPIRRY D++AH ++ G + E + +IA S++Y +E
Sbjct: 585 TSPIRRYPDMMAHRLLERYATG-GRSVEKDRYEEYCDHCSQMEQIAANAERASVKYKQVE 643
Query: 520 FL 521
F+
Sbjct: 644 FM 645
>gi|125718408|ref|YP_001035541.1| VacB/Rnb family exoribonuclease [Streptococcus sanguinis SK36]
gi|125498325|gb|ABN44991.1| Exoribonuclease, VacB/Rnb family, putative [Streptococcus sanguinis
SK36]
Length = 782
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 155/338 (45%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DKDA+ R TSV++ PM PE+L+ SL + +T S ++ D G + + ++
Sbjct: 304 DKDALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKNTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTANSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|427385040|ref|ZP_18881545.1| ribonuclease R [Bacteroides oleiciplenus YIT 12058]
gi|425727208|gb|EKU90068.1| ribonuclease R [Bacteroides oleiciplenus YIT 12058]
Length = 713
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 174/384 (45%), Gaps = 48/384 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++ + R+D + + ID +A + DDALS +L++G +V +H+AD + Y+ G +
Sbjct: 252 SDEEIAKREDFRGVTTFTIDPKDAKDFDDALSIRKLKEGLWEVGVHIADVSHYVTEGGII 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + V +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAYSVIFDINEKGDVKNARVVH 371
Query: 298 SIIKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++IK TYE A +++ + +EE L + + A ALR Q R GAI+ E +
Sbjct: 372 TVIKSDRRFTYEEAQQIIETKEGDFKEEV-LMLDTIAKALR-QKRFVAGAINFDRYEVKF 429
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR--- 406
++ + P I++Y ++ D A +LV E M+L +A + PYR
Sbjct: 430 EIDDKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKNKKPKVFPYRIHD 485
Query: 407 -GQPQ--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRA 437
P+ + DVS + HL E + + ++ M+
Sbjct: 486 LPDPEKLDNLAQFIARFGYKLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQK 545
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASI 497
A + H L Y FTSPIRR+ D++ H + L G S + E +
Sbjct: 546 ARYSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTKYLDG-GRSVSEKKYEDLCDH 603
Query: 498 VNMQTRIARRLSNTSLRYWIIEFL 521
+ +IA S++Y +EF+
Sbjct: 604 SSNMEQIAANAERASIKYKQVEFM 627
>gi|255693553|ref|ZP_05417228.1| ribonuclease R [Bacteroides finegoldii DSM 17565]
gi|260620618|gb|EEX43489.1| ribonuclease R [Bacteroides finegoldii DSM 17565]
Length = 718
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 170/382 (44%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +++G +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRSIKNGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEIKDSRIAHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDYKEEV-LMLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L + +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGRVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|422820841|ref|ZP_16869034.1| ribonuclease R [Streptococcus sanguinis SK353]
gi|324991459|gb|EGC23392.1| ribonuclease R [Streptococcus sanguinis SK353]
Length = 782
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 157/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHAI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M+ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLAANETVAEHFTKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGVRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|15607021|ref|NP_214403.1| VacB/RNase II family 3'-5' exoribonuclease [Aquifex aeolicus VF5]
gi|7674333|sp|O67834.1|RNR_AQUAE RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|2984266|gb|AAC07792.1| VacB protein (ribonuclease II family) [Aquifex aeolicus VF5]
Length = 705
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 162/378 (42%), Gaps = 46/378 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL + ID ++A + DDA++ +G K+Y+H+AD + Y+ G+ +DK+A KR
Sbjct: 240 RRDLREQLCFTIDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKR 299
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G + + P M PEKL+ + SLR E A TV +V G++ Y + S+I+
Sbjct: 300 GFTYYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNLKAYDIYESVIRSKA 359
Query: 305 MLTYESATELL---------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY A L+ NL E L+++ + + R + G+ID E +
Sbjct: 360 RLTYNEALALIVGDPALEKKFPNLVE--PLRMMETLYRILSRKRWEMGSIDFDLPEAEVI 417
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-GQPQSNID 414
V +P I + A R++ MI E +A + YR +P
Sbjct: 418 VDEYGEPTAIYPY----ERHVAHRIIEHFMISANETVALHLEHAGYPCLYRVHEPPDEEK 473
Query: 415 VSAFAHLPEG------------PVRSSAIVK--------------IMRAAAIDFRKP--V 446
V + EG P I++ +RA A P V
Sbjct: 474 VENLLEILEGLGYKVKRPHEYTPKFFQKIIEDFEGRPEENLVRFLTLRAMARAKYSPHNV 533
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPF--SAGQLEGMASIVNMQTRI 504
H L L Y FTSPIRRY D++ H +K LRGE + + LE + ++ Q RI
Sbjct: 534 GHFGLALEHYAHFTSPIRRYPDIIVHRLLKKALRGEEIDYEKTLAYLEEAGNHLSKQERI 593
Query: 505 ARRLSNTSLRYWIIEFLR 522
A ++ Y +++
Sbjct: 594 ADEAEMEAIDYLKARYMK 611
>gi|110596746|ref|ZP_01385036.1| VacB and RNase II family 3'-5' exoribonucleases:Ribonuclease R
[Chlorobium ferrooxidans DSM 13031]
gi|110341433|gb|EAT59893.1| VacB and RNase II family 3'-5' exoribonucleases:Ribonuclease R
[Chlorobium ferrooxidans DSM 13031]
Length = 807
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 160/356 (44%), Gaps = 52/356 (14%)
Query: 164 EKFDHKDISNFLQK-----AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
E FD K I +F E +L R D+ V+ ID +A + DDALS L+DG
Sbjct: 298 ETFD-KQIVDFASSIREGITEKDLEGRLDIRDKVVFTIDPVDAKDFDDALSVETLEDGLY 356
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
++ +H+AD + Y+ S D++A+KR TSV+L PM P +L+ E SL G A
Sbjct: 357 RIGVHIADVSHYVPENSPLDREALKRATSVYLVDRVIPMLPSRLSEEICSLNPGVDRMAF 416
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQ 337
+V + ++G + ++ ++I YE E+L + EL++L + L +
Sbjct: 417 SVFFTMTAEGEVRKHEFQKTVIHSKRRYAYEDVEEILKKGKGDYCDELQLLDRISVLLRE 476
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA---- 393
R + G +D T E R K+ + +P ++ + + RL+ E M+L +A
Sbjct: 477 KRFKHGGLDFETEEVRFKLGSKGEPLEVMR----KERLGSHRLIEEFMLLANRKVAEYLT 532
Query: 394 -TYGSFNNLALP--YR--GQPQSN--IDVSAFAHL----------PEGPVRSSA----IV 432
T+ A P YR G PQ I +S F EGP+ ++ ++
Sbjct: 533 RTFKENKKEAQPVIYRVHGSPQQEKVIILSNFVKRFGFDLKLNRGKEGPIVTAKALRQLL 592
Query: 433 KIMRAAAIDF----------RKPVR------HGVLGLPGYVQFTSPIRRYMDLLAH 472
+ ++ ++F K V H LG Y FTSPIRRY DL+ H
Sbjct: 593 QQVKGTNVEFLVSELVLRSMSKAVYTGDNLGHFGLGFEHYTHFTSPIRRYPDLIVH 648
>gi|258576897|ref|XP_002542630.1| predicted protein [Uncinocarpus reesii 1704]
gi|237902896|gb|EEP77297.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1039
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 124/499 (24%), Positives = 211/499 (42%), Gaps = 106/499 (21%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSA--MRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R D L V+ +D A E+DD S + + ++IHVA+P+ +I P + K A
Sbjct: 539 RTDWGGLPVFCVDSPGAAEIDDGFSVEPVNGSENEYWIHIHVANPSAFIPPDHILAKGAE 598
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
S + P YPM P + SL G+ A+T+S ++ G I + + +S +K
Sbjct: 599 HFKRSFYSPERIYPMLPPSITHTHFSLGPGK--PALTISAKVNMQGEILDKKIVSSYVKN 656
Query: 303 TYMLTYESATELL----------------------------HLNLEEEAELKILSEAAAL 334
+T + +L H+ E L+ L +
Sbjct: 657 VIYITPDRLRKLFGIDYDNVPRMTLAVGGELGEPSRPELQDHITEEHGQSLRTLQKLLKA 716
Query: 335 RLQWRLQQGAIDTATLE----------TRIKVANPEDP-------EPIINLY------VE 371
R + RL++GAID+A+++ +I+ + +D +PII++ +E
Sbjct: 717 RWEVRLKKGAIDSASIQRSQPLVSGINGQIESYSVDDAPVSRLREDPIISISGLMLDPLE 776
Query: 372 DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAI 431
LVS M+L GE A + + L + G Q PE V S +
Sbjct: 777 TTESTKQDLVSHAMLLGGEIAAQWCKERGIPLIFNGATQR----------PEDTVLSEIL 826
Query: 432 VKIMRAAAIDFRK------PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP- 484
+++I K P+RH LG+ Y + TSP+RRY DLL H+Q++A LR E+
Sbjct: 827 GSKKSSSSIRRSKGYLSPVPIRHTALGMDQYTKCTSPLRRYSDLLGHWQIEAALRHEAET 886
Query: 485 ------------PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQ--- 529
PFS +++ + + N Q R+ R +TS +W ++ L R Q
Sbjct: 887 KKPISQQNKAVLPFSKQEVDALIARSNWQNRVKDRAQSTSRDFWALQLLFRAHNYNQAEL 946
Query: 530 ---YRALILRFIKDRTAALL----------LVEVGLQAAAWVSVGA---QIGDEVEVKVE 573
++ LI+ + + T + + L+ L+ V G Q GD V+VK++
Sbjct: 947 PETFQCLIVTQMLEGTVSNVKNSKTQYMGSLLPFRLRCCISVDKGMPPLQAGDVVDVKLQ 1006
Query: 574 EAHPRD---DIIYLKEVVR 589
+A+ + D+ ++K V R
Sbjct: 1007 QANLYNVFLDVDFVKLVKR 1025
>gi|315283561|ref|ZP_07871719.1| ribonuclease R [Listeria marthii FSL S4-120]
gi|313612791|gb|EFR86775.1| ribonuclease R [Listeria marthii FSL S4-120]
Length = 793
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 181/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ M+L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVMQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + DG + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPKVDRFTMSCEMEIDEDGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L N E E L+ + + A + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVENDEALREKYAPIVPMLEAMQKLAETLRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|383124676|ref|ZP_09945339.1| ribonuclease R [Bacteroides sp. 1_1_6]
gi|251841167|gb|EES69248.1| ribonuclease R [Bacteroides sp. 1_1_6]
Length = 718
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 171/382 (44%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS ++DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVKDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKTGDFKEEV-LMLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKVGRVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSESKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|422851224|ref|ZP_16897894.1| ribonuclease R [Streptococcus sanguinis SK150]
gi|325694812|gb|EGD36717.1| ribonuclease R [Streptococcus sanguinis SK150]
Length = 782
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTANSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|422870496|ref|ZP_16916989.1| ribonuclease R [Streptococcus sanguinis SK1087]
gi|328946711|gb|EGG40849.1| ribonuclease R [Streptococcus sanguinis SK1087]
Length = 782
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 159/338 (47%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL ++ ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLARRLDLREEIIFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|78188726|ref|YP_379064.1| ribonuclease R [Chlorobium chlorochromatii CaD3]
gi|78170925|gb|ABB28021.1| RNAse R [Chlorobium chlorochromatii CaD3]
Length = 794
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 152/337 (45%), Gaps = 46/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ +R D+ V+ ID +A + DDALS L+DG +V +H+AD + Y++ S
Sbjct: 316 SEADIKDRLDIRDKVVFTIDPIDAKDFDDALSVEMLEDGLCRVGVHIADVSHYVQENSPL 375
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A KR TSV+L PM P +L+ + SL G A ++ L + + Y
Sbjct: 376 DREAQKRATSVYLVDRVIPMLPARLSEQICSLNPGVDRMAYSIFFTLTPEAEVRNYEFHK 435
Query: 298 SIIKPTYMLTYESATELLHLNLEEE-AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE E+LH + EL++L + + + R + G +D T E R K+
Sbjct: 436 TVIHSKRRFTYEDVEEILHKGEGDYLQELQLLDRYSTILREKRFRDGGLDFETEEVRFKL 495
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALP--YR--G 407
+P +I + + + RL+ E M+L +A T+ LP YR G
Sbjct: 496 GKEGEPLEVI----KKERLGSHRLIEEFMLLANRKVAKHLTKTFRENRKTPLPVLYRVHG 551
Query: 408 QPQSN--IDVSAFAHL----------PEGPVRSS----AIVKIMRAAAIDF--------- 442
PQ + V+ F EG + S+ +++ ++ ++F
Sbjct: 552 SPQEEKVVMVANFVKRLGYDLKINRSKEGIIVSAQSLRQLLQQVKGTNVEFLVSELVLRC 611
Query: 443 -------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY DLL H
Sbjct: 612 MSKAVYTGDNIGHYGLGFEHYTHFTSPIRRYPDLLIH 648
>gi|313679951|ref|YP_004057690.1| RNAse R [Oceanithermus profundus DSM 14977]
gi|313152666|gb|ADR36517.1| RNAse R [Oceanithermus profundus DSM 14977]
Length = 775
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 154/341 (45%), Gaps = 47/341 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
L R+D L V+ ID +A + DDA+ RL+ G +V IH+AD Y+ GS D++
Sbjct: 235 TLRAREDFRQLPVFTIDGADAKDFDDAVHLERLEGGGWRVGIHIADVAHYVREGSALDRE 294
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNS 298
A +R TSV+LP PM PEK++ SL GE + +T+SVV L G + +Y +
Sbjct: 295 AYERATSVYLPGRVLPMLPEKISNGVCSLVPGE--DRLTMSVVADLDEKGRVRDYRIVQG 352
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL-RLQW-----RLQQGAIDTATLET 352
+I+ LTY ELL EA + + L RL RL GA+D T E
Sbjct: 353 VIRSKARLTYGQVEELLSGGRLPEAARFLEDDVRELYRLTRHLKAERLAAGALDFDTREV 412
Query: 353 RIKVANPEDPEPIINLY-VEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--- 408
++ D + NL+ + + A L+ E+M+L +A + + YR
Sbjct: 413 KV------DFDEGGNLHLIPIREGEARSLIEELMLLANRTVARHLDERGIPTLYRVHEDP 466
Query: 409 -------------------PQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAAAIDF 442
P ++ D +A + PEGP S +++ M A
Sbjct: 467 VADRYKTLVEALSRMGYHLPAADPDPAAMQRVLEAARGKPEGPAVSMLVLRSMSLARYAH 526
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
+ H L Y+ FTSPIRRY DL+ H +K ++G+
Sbjct: 527 EN-LGHFGLAFEDYLHFTSPIRRYPDLVVHRVLKELIKGKG 566
>gi|262282697|ref|ZP_06060465.1| ribonuclease R [Streptococcus sp. 2_1_36FAA]
gi|262261988|gb|EEY80686.1| ribonuclease R [Streptococcus sp. 2_1_36FAA]
Length = 782
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 170/369 (46%), Gaps = 47/369 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRVTYSDVNDIIAGDEEKAGQFKAIVPSIDSMVQLHEILENMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ +IM+A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQEIMKAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
HG GL Y FTSPIRRY DLL H V+ G+S +A + + I
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVRDY--GKSKEIAAHFEQVIPEIA 595
Query: 499 NMQTRIARR 507
N + RR
Sbjct: 596 NQSSSRERR 604
>gi|312864638|ref|ZP_07724869.1| ribonuclease R [Streptococcus downei F0415]
gi|311099765|gb|EFQ57978.1| ribonuclease R [Streptococcus downei F0415]
Length = 800
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 51/341 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + +R DL + ID EA +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 246 SESDFEDRLDLRDEITFTIDGKEAKDLDDAVHIKRLPNGNFELGVHIADVSYYVTEGSAL 305
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSV 295
DK+A+ RGTSV++ PM PE+L+ SL + +T S ++ + G + ++++
Sbjct: 306 DKEAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEINPQGKVVKHTI 363
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY+ ++L N E ++ K ++E + ++ R+++GA+D
Sbjct: 364 TQTVIKTSFRMTYDDVNQMLAGNQEVISQFKPIMDSVNAMAELHKILVEMRIKRGALDFD 423
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
E RI V + P ++ V D+ A R++ M+ E +A + + L YR
Sbjct: 424 RPEARILVDDKGLPTDVV---VRDRG-TAERMIESFMLAANECVAEHFAKRKLPFIYRIH 479
Query: 407 -----------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRA 437
GQ ++ A P V S +++ M+
Sbjct: 480 ETPKAEKLQKFIDYASLFGVPIYGTANSLGQKALQEFMAQIAGQPGHEVMSMMLLRSMQQ 539
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
A HG GL Y FTSPIRRY DLL H V+
Sbjct: 540 ARY---SEDNHGHYGLAADYYTHFTSPIRRYPDLLVHRMVR 577
>gi|329962724|ref|ZP_08300647.1| ribonuclease R [Bacteroides fluxus YIT 12057]
gi|328529558|gb|EGF56461.1| ribonuclease R [Bacteroides fluxus YIT 12057]
Length = 715
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 162/376 (43%), Gaps = 45/376 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D ++ + ID +A + DDALS RL+D +V +H+AD T Y++ G + DK+A KR
Sbjct: 260 REDFRNVTTFTIDPKDAKDFDDALSIRRLKDNLWEVGVHIADVTHYVKEGGIIDKEAEKR 319
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A +V + G I V +++IK
Sbjct: 320 ATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEMTEKGEIKHSRVVHTVIKSNR 379
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ + + E+ L A + R + GAI+ E + ++ P
Sbjct: 380 RFTYEEAQDIIETGKGDFKEEILQLDRFAKILRDNRFKAGAINFDRYEVKFEIDEKGKP- 438
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR------------ 406
+++Y + D A +LV E M+L +A LPYR
Sbjct: 439 --VSVYFKVSKD-ANKLVEEFMLLANRTVAEKIGRVPKGKKAKVLPYRIHDLPDPEKLDN 495
Query: 407 --------------GQPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAAAIDFRKP 445
G +++I S HL E + + ++ M+ A
Sbjct: 496 LAQFIARFGYKLRTGGTKTDISKS-INHLLDDIQGKKEENLIETVSIRAMQKARYSVHN- 553
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIA 505
V H L Y FTSPIRR+ D++ H + L S + E + + +IA
Sbjct: 554 VGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTKYLDQGGRSVSEQKYEALCEHSSSMEQIA 613
Query: 506 RRLSNTSLRYWIIEFL 521
S++Y +EF+
Sbjct: 614 ANAERASIKYKQVEFM 629
>gi|237741620|ref|ZP_04572101.1| exoribonuclease II [Fusobacterium sp. 4_1_13]
gi|229429268|gb|EEO39480.1| exoribonuclease II [Fusobacterium sp. 4_1_13]
Length = 701
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 175/381 (45%), Gaps = 42/381 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT+L V ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A R
Sbjct: 245 RKDLTNLSVITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLEARNR 304
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+L PMFP++++ SL + E + + + G + Y V S+I+ +
Sbjct: 305 GNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIRSVH 364
Query: 305 MLTYESATELL--HLNLEEEAE-----LKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+TY++ +L NL E LK + E + + + +G+ID E ++ +
Sbjct: 365 RMTYKAVNGILDGDKNLINEYSDIYEMLKQMLELSKILRAKKHIRGSIDFELPELKVVLD 424
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------- 410
E E I Y++D+ + +++ + MI E +A + LA YR +
Sbjct: 425 KDEKVEKI---YLKDRGE-GEKIIEDFMIAANETVAERIFWLELASIYRTHEKPDREKIV 480
Query: 411 ----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH-----G 449
NI F + E R+ ++ + K R+ G
Sbjct: 481 KLNEILSKFGYKIPNFDNIHPKQFQEIIERS-RNKETSMLVHKTILTSLKQARYTVEDIG 539
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL+ H + + + F L+ +A ++ R+A +
Sbjct: 540 HFGLASSHYTHFTSPIRRYADLMVHRVLFSTIDDSIKSFKEADLDEIAQHISKTERVAMK 599
Query: 508 LSNTSLRYWIIEFLRRQPKER 528
+ S+R ++E+++++ E+
Sbjct: 600 AEDESVRIKLVEYMQKRVGEK 620
>gi|343510605|ref|ZP_08747828.1| exoribonuclease II [Vibrio scophthalmi LMG 19158]
gi|342801574|gb|EGU37034.1| exoribonuclease II [Vibrio scophthalmi LMG 19158]
Length = 672
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 127/460 (27%), Positives = 199/460 (43%), Gaps = 63/460 (13%)
Query: 88 RVFAKVKVSSGELLEDKLENQVLQKGLLLEFKK--------DSDRVLLAVAQRP-DGKKN 138
R +VK+ G+L Q+ ++ L + KK + D V+ + Q P G
Sbjct: 85 RFIGRVKMFKGKLNVTPDHPQLKKQSLKAKVKKGLNPTDFAEGDWVVAHLVQHPLKGDAG 144
Query: 139 WMVYDQ---NGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYA 195
++V A I P VT + + I ++ K +D L R D+TH+
Sbjct: 145 FLVEISKKITDADDKIAPWWVTLAENDLPNSEPAGIDHWELK-DDADLERVDMTHVPFVT 203
Query: 196 IDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATY 255
ID ++DDAL A + +G ++ I +ADPT YI P S DK A +RG +++LP
Sbjct: 204 IDGQSTKDMDDALYAKKNANGDFELTIAIADPTAYITPDSDMDKVARERGFTIYLPGRNI 263
Query: 256 PMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNSIIKPTYMLTYESATEL 314
PM P LA + SL +GEV A+ +V + DG I E + IK L Y+ ++
Sbjct: 264 PMLPRDLADDLCSLIEGEVRPALCCTVTVDKDGVIGEDIHFFAAHIKSHARLVYDHVSDW 323
Query: 315 LHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPII 366
L E + ++ L E + R WR + + R +++ D ++
Sbjct: 324 LENGESPEWQPNDEIAQIVRDLYEFSQARANWRQNNAVVFPDRPDYRFELSEDND---VV 380
Query: 367 NLYVEDQADPAMRLVSEMMI---LCG----EAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
++ D A RLV E MI +C A G FN A +P+ DV A
Sbjct: 381 AIHA-DMRRTANRLVEESMITANICAGKTLRANFECGVFNTHA---GFKPEKIADVVALV 436
Query: 420 HLPEG--PVRSSAIVKIMRAAA------------IDFR------------KPVRHGVLGL 453
+ PEG P + +I + AA +D R +P+ H +GL
Sbjct: 437 N-PEGELPFTAESIATLEGFAALRRWLGQQDTSYLDNRIRKAQAYSEMGNQPLPHYAMGL 495
Query: 454 PGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEG 493
Y +TSPIR+Y D++ H +KA + G+ P +A + G
Sbjct: 496 DIYATWTSPIRKYGDMINHRMLKAHVLGKEPVQTADETVG 535
>gi|406663904|ref|ZP_11071913.1| Ribonuclease R [Cecembia lonarensis LW9]
gi|405551826|gb|EKB47447.1| Ribonuclease R [Cecembia lonarensis LW9]
Length = 731
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 158/346 (45%), Gaps = 50/346 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + NR+D+ + + ID +A + DDA+S +L++G ++ +H+AD T Y++P + ++
Sbjct: 265 DEIKNRRDMRDIPTFTIDPVDAKDFDDAISYRKLENGNYEIGVHIADVTHYVKPKTKLEQ 324
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDN 297
+A R TSV+L T PM PE+L+ SLR E + +T S V D + + +
Sbjct: 325 EAYDRATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEMDENADVLNHWIGR 382
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-----ELKILSEAAALRLQWRLQQGAIDTATLET 352
++ YE A E N++++ EL L+E A + R +GAI+ T+E
Sbjct: 383 TVTHSDRRFAYEEAQE----NIDKQEGDFYQELTFLNELAKKIRKRRFDKGAINFETVEV 438
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA---LPYRGQP 409
+ K+ + P + L ++++ D +L+ E M+L +A + N YR
Sbjct: 439 KFKLDDKGIP---LGLMIKERKD-IHKLIEEFMLLANRTVAEFIYNRNKGKDTFVYRIHD 494
Query: 410 QSNID--------VSAFAH---LPEGPVRSSAIVKIMR-------------------AAA 439
+I+ F H + EG S A+ ++M A A
Sbjct: 495 FPDIEKLETFSTFAKRFGHDIKISEGTKISKALNQLMDEIVGKPEQNVLEQLAIRSMAKA 554
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPP 485
+P H L Y FTSPIRRY D++ H ++ L G P
Sbjct: 555 KYTTEPKSHFGLAFKHYTHFTSPIRRYPDMMVHRLLQHYLDGGKGP 600
>gi|393785787|ref|ZP_10373933.1| ribonuclease R [Bacteroides nordii CL02T12C05]
gi|392661406|gb|EIY54992.1| ribonuclease R [Bacteroides nordii CL02T12C05]
Length = 713
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 169/384 (44%), Gaps = 48/384 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E+ + R+D + + ID +A + DDALS +L+D +V +H+AD T Y++ G +
Sbjct: 252 SEEEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDNLWEVGVHIADVTHYVKEGGII 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V + G + + +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFLCSLRPHEEKLAFSVIFDITEKGEVKNSRIVH 371
Query: 298 SIIKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+II TYE A +++ + +EE L + + A ALR + R GAI+ E +
Sbjct: 372 TIIYSDRRFTYEEAQQIIETQEGDFKEEV-LMMDTIAKALR-ERRFAAGAINFDRYEVKF 429
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR--- 406
++ P +++Y ++ D A +LV E M+L +A LPYR
Sbjct: 430 EIDEKGKP---VSVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKGKKAKVLPYRIHD 485
Query: 407 -GQPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRA 437
P+ ++S F +R+S ++ M+
Sbjct: 486 LPDPEKLDNLSQFIARFGYKLRTSGTKTDISKSINHLLDDIQGKKEENLIETVSIRAMQK 545
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASI 497
A + H L Y FTSPIRR+ D++ H V L G S + E +
Sbjct: 546 ARYSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYLDG-GRSVSESKYEDLCDH 603
Query: 498 VNMQTRIARRLSNTSLRYWIIEFL 521
+ +IA S++Y +EF+
Sbjct: 604 SSNMEQIAANAERASIKYKQVEFM 627
>gi|401681512|ref|ZP_10813412.1| ribonuclease R [Streptococcus sp. AS14]
gi|400186282|gb|EJO20495.1| ribonuclease R [Streptococcus sp. AS14]
Length = 782
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL ++ ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLREEVIFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSNYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHII 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEEVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVQ 575
>gi|221195423|ref|ZP_03568478.1| ribonuclease R [Atopobium rimae ATCC 49626]
gi|221184610|gb|EEE17002.1| ribonuclease R [Atopobium rimae ATCC 49626]
Length = 698
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 155/348 (44%), Gaps = 51/348 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL ID +A + DDA+ A RL DG ++ +H+AD ++Y+ GS D +A
Sbjct: 203 SRVDLRGEFCVTIDPSDAKDFDDAVGARRLSDGGYELDVHIADVSRYVSWGSSIDLEARA 262
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R SV+L PM PE L + SLR E V+V + L+++G I N++I+
Sbjct: 263 RTCSVYLVDRVLPMLPEWLCNDLCSLRPHEDRLTVSVRMRLNAEGVICSVQAMNAVIRSA 322
Query: 304 YMLTYESATELLHLNLEEEAE--------------LKILSEAAALRLQWRLQQGAIDTAT 349
L+YE LL + +++ L+ L E A R + R ++GAID T
Sbjct: 323 ARLSYEQVDALLEGKMSQDSPVMGDTTQQSALVRMLETLDEIRAKRQKIRYKRGAIDFET 382
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ- 408
+ETR+ + P + + A L+ E M+L E++A + ++ YR
Sbjct: 383 VETRMLLDVEGRPTGV----SVRRRTRATNLIEEAMLLANESVAKMLADKDIKTAYRVHE 438
Query: 409 ---PQS------------NIDVSAFAHLPEG----------PVRSSAIVKIMRAAAIDFR 443
P++ ++ A + G R + +++ A + +
Sbjct: 439 SPSPEALHAGLSVLVAIGALETGEAARITTGDSCAICGALEKSRGTGYTRVVNAVLLRAQ 498
Query: 444 K-----PVRHG--VLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
K PV G LG Y FTSPIRRY D+L H +K+ L E P
Sbjct: 499 KRAIYLPVNQGHYALGASAYCHFTSPIRRYSDILVHRALKSLLADEKP 546
>gi|421488853|ref|ZP_15936241.1| ribonuclease R [Streptococcus oralis SK304]
gi|400368070|gb|EJP21085.1| ribonuclease R [Streptococcus oralis SK304]
Length = 784
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 163/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL ++ ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDEIIFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|124003005|ref|ZP_01687856.1| ribonuclease R [Microscilla marina ATCC 23134]
gi|123991655|gb|EAY31063.1| ribonuclease R [Microscilla marina ATCC 23134]
Length = 736
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 44/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ + ID + A + DDALS +L +G ++ IH+AD T Y++P S DK+ +R
Sbjct: 274 RRDIRETLTFTIDPENAKDFDDALSIKKLDNGNWEIGIHIADVTHYVKPDSKVDKEGAER 333
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM PE+L+ E SLR E + L + + + ++I
Sbjct: 334 ATSVYLVDRVVPMLPERLSNELCSLRPHEDKLTFSAMFELDENAHVIKEWFGRTVIHSDR 393
Query: 305 MLTYESATELLHL-NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
+YE A E++ N + EL+ L+ A R ++GA+ T+E + K+ P
Sbjct: 394 RFSYEEAQEVMDSGNGDHVDELRTLNALAKKLTAQRFEKGAMSFETVEVKFKLDENGTP- 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY--------GSFNNLALPYRGQPQSNI-- 413
I LY +++ D A +L+ E M+L +A + + + YR N+
Sbjct: 453 --IGLYTKERKD-AHKLIEEFMLLANRKVAEFVFKLPVKGTKAESNTMVYRTHDDPNVEK 509
Query: 414 --DVSAFAH--------------------------LPEGPVRSSAIVKIMRAAAIDFRKP 445
+ S FA P+ V ++ M A AI +
Sbjct: 510 LKNFSGFAKKLGHEVKLNGKAMTRSLNKLMTDIEDTPQQNVLQGLAIRTM-AKAIYTTEA 568
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY D++ H
Sbjct: 569 TGHFGLAFDHYTHFTSPIRRYPDMMVH 595
>gi|291402815|ref|XP_002718229.1| PREDICTED: DIS3-like exonuclease 1-like [Oryctolagus cuniculus]
Length = 1023
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 194/441 (43%), Gaps = 72/441 (16%)
Query: 184 NRKDL--THLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+RKDL THL V+ ID +++DDALS L G +++ +H+AD T +++P S DK+A
Sbjct: 448 DRKDLRKTHL-VFTIDPKGCEDVDDALSVRTLSSGNLELGVHIADVTYFVKPKSHLDKEA 506
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS---VDNS 298
R T+ +LP Y M P L+ SL +G + +SV+ D + E S
Sbjct: 507 RARATTYYLPDRRYDMLPSVLSSNLCSLLRG--VDRYAMSVIWELDMTTYEIKKVWYGRS 564
Query: 299 IIKPTYMLTYESATELLHLNL---------------EEEAELKILSEA----AALRLQWR 339
II TY L+YE+A ELL NL E+E L+ L+ A A + +R
Sbjct: 565 IIHSTYQLSYEAAQELLDGNLSITGNIEEFQDMEEKEKEDRLQELTWAIEKLADIASHFR 624
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--TYGS 397
Q+G +D A I+++ D E I V Q R+V+E MIL +A Y S
Sbjct: 625 AQRG-LDGALDLDGIEISVLLDEEKNILDLVPRQQRRIHRMVAECMILANHWVARKIYES 683
Query: 398 FNNLALPYRGQPQ-----SNIDVSAFA---HLPEGPVRSSA-------------IVKIMR 436
F AL R P S + SA A H+ R+ A + K++R
Sbjct: 684 FPRQALLRRHPPPRQNLFSELKQSAKAGGFHIDTSSNRALALSLDNAYDVSDPMVNKLLR 743
Query: 437 -------AAAIDF------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL---- 479
+ A+ F + H LGL Y FTSPIRRY D++ H + A +
Sbjct: 744 NMATLAMSNALYFSTGSCREREFHHYGLGLDKYTHFTSPIRRYADIIVHRLLIAAIAEDK 803
Query: 480 -RGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRAL---IL 535
+ E S LE + +N + R A+ + + F R + +R R + I+
Sbjct: 804 TKTELNLLSDRCLEELCDHINERHRAAKLCQRQATELFQCHFFRDKDADRDERCVADGII 863
Query: 536 RFIKDRTAALLLVEVGLQAAA 556
+D L + G++ A
Sbjct: 864 YAFRDTAVQLYIPRYGIKGTA 884
>gi|371775901|ref|ZP_09482223.1| ribonuclease R [Anaerophaga sp. HS1]
Length = 720
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 166/385 (43%), Gaps = 56/385 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L +G +V +H+AD T Y+ P S+ +K+A KR
Sbjct: 259 RRDFRGVTTFTIDPVDAKDFDDALSVRKLDNGLWEVGVHIADVTYYVNPNSIIEKEAAKR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM PE+L+ E SLR E +V + + I + V +II+
Sbjct: 319 ATSVYLVDRVVPMLPERLSNELCSLRPDEDKLCFSVVFQIDDNAKIIDSWVGRTIIRSIR 378
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ L + + EL++L++ A R +G++D +E + ++ +D +
Sbjct: 379 RFTYEEAQQVIETGLGDCKMELEVLNDLAKKLRAERFSKGSVDFERVEVKFEL--DDDGK 436
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA---H 420
P+ + E + A +L+ E M+L + +A N L + N F H
Sbjct: 437 PLSVTFKEPK--DANKLIEEFMLLANKRVAEIIGKNELD---KAPSHHNKTAKTFVYRIH 491
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKP----------------------------------- 445
P + + +R ++ KP
Sbjct: 492 DEPDPEKFETFSRFVRKFGLE-AKPKGQETISHSLNRLLDKVQGQKHQNIVETLAIRTMS 550
Query: 446 --------VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASI 497
+ H LG Y FTSPIRRY D++ H ++ L G SA + E +
Sbjct: 551 KAVYSTHNIGHYGLGFKYYTHFTSPIRRYPDMMVHRLLQRYLEG-GRSVSAQKYEELCDH 609
Query: 498 VNMQTRIARRLSNTSLRYWIIEFLR 522
+ A S++Y +EFL+
Sbjct: 610 SSKMEIRAADAERASIKYKQVEFLQ 634
>gi|343505543|ref|ZP_08743113.1| exoribonuclease II [Vibrio ichthyoenteri ATCC 700023]
gi|342807513|gb|EGU42701.1| exoribonuclease II [Vibrio ichthyoenteri ATCC 700023]
Length = 667
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 201/460 (43%), Gaps = 63/460 (13%)
Query: 88 RVFAKVKVSSGELL----EDKLENQVLQ----KGLLLEFKKDSDRVLLAVAQRP-DGKKN 138
R +VK+ G+L +L+ Q L+ KGL + D V+ + Q P G
Sbjct: 85 RFIGRVKMFKGKLNVTPDHPQLKKQSLKAKVMKGLNPNDFAEGDWVVAHLVQHPLKGDAG 144
Query: 139 WMV---YDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYA 195
++V A+ I P VT + + I N+ K +D L R D+TH+
Sbjct: 145 FLVEISKKITDANDKIAPWWVTLAENDLPNSEPAGIDNWELK-DDADLERIDMTHIPFVT 203
Query: 196 IDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATY 255
ID ++DDAL A + +G ++ I +ADPT YI P S D A +RG +++LP
Sbjct: 204 IDGQSTKDMDDALYAKKNANGDFELTIAIADPTAYITPDSDMDTVARERGFTIYLPGRNI 263
Query: 256 PMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATEL 314
PM P LA + SL +GEV A+ +V + DG I + + IK L Y+ ++
Sbjct: 264 PMLPRDLADDLCSLIEGEVRPALCCTVTVSKDGVIGDDIHFFAAHIKSHARLVYDHVSDW 323
Query: 315 L--------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPII 366
L N E ++ L E + R WR + + R +++ D ++
Sbjct: 324 LENGESPQWQPNEEIAQIVRDLYEFSLARADWRQNNAVVFPDRPDYRFELSEDND---VV 380
Query: 367 NLYVEDQADPAMRLVSEMMI---LCG----EAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
++ D A RLV E MI +C A G FN A +P+ DV A
Sbjct: 381 AIHA-DMRRTANRLVEESMITANICAGKTLRANFDCGVFNTHA---GFKPEKIADVVALV 436
Query: 420 HLPEG--PVRSSAIVKIMRAAA------------IDFR------------KPVRHGVLGL 453
+ PEG P + +I + AA +D R +P+ H +GL
Sbjct: 437 N-PEGELPFTAESIATLEGFAALRRWLGQQDTSYLDNRIRKAQAYSEMGNQPLPHYAMGL 495
Query: 454 PGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEG 493
Y +TSPIR+Y D++ H +KA + G++P +A + G
Sbjct: 496 DIYATWTSPIRKYGDMINHRMLKAHVLGKAPVQTADETVG 535
>gi|384439817|ref|YP_005654541.1| Exoribonuclease [Thermus sp. CCB_US3_UF1]
gi|359290950|gb|AEV16467.1| Exoribonuclease [Thermus sp. CCB_US3_UF1]
Length = 753
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 169/371 (45%), Gaps = 49/371 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E+ L R+D L+V+ ID +A + DDA+ RL G +V +H+AD + Y+ G
Sbjct: 216 LEIPEEELGRREDFRALRVFTIDGVDAKDFDDAIHIERLPKG-FRVGVHIADVSHYVREG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S D++A RGTSV+LP PM PE+L+ SL+ GE ++ L D +
Sbjct: 275 SPLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLKPGEDRLVLSALFELGEDLKVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELL-----HLNLEEEAELKILSEAAALRLQWRLQQGAID 346
+I+ LTY E+ E H L E+ L +L A LR Q RL+ GA+D
Sbjct: 335 FVEGVIRSVARLTYTEVEAFAEGFGLPEAHAFLAEDLSL-LLDLTARLR-QKRLEAGALD 392
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPY 405
+ E +++V + L++ Q +P R L+ E+M+L A+A + L +
Sbjct: 393 FSFPEVKVEVED-------GTLHLIPQQEPRARSLIEELMLLANRAVAEHLVKKGLPALF 445
Query: 406 RGQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMRA 437
R + + A A L PE PV + +++ +R
Sbjct: 446 RVHEEPLEEAYAKLRQALARLGYSLPEALSPKALQGVLLEAKGRPEEPVVAGLVLRSLRL 505
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE-SPPFSAGQLEGMAS 496
A + H L + Y+ FTSPIRRY DL+ H +KA LR +P A LE S
Sbjct: 506 ARYAAEN-LGHFGLAMEHYLHFTSPIRRYPDLVVHRVLKAALRRTLTPAKKARWLETFPS 564
Query: 497 IVNMQTRIARR 507
+ + R+
Sbjct: 565 VAEHASERERK 575
>gi|406884788|gb|EKD32133.1| hypothetical protein ACD_77C00174G0023 [uncultured bacterium]
Length = 705
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 181/399 (45%), Gaps = 47/399 (11%)
Query: 161 PGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKV 220
P VEK + + IS + E + R+D + + ID +A + DDALS +L +G +V
Sbjct: 197 PKVEK-EAEKISEKIDPEE--IKRRRDFRGVTTFTIDPTDAKDFDDALSLKKLDNGNWEV 253
Query: 221 YIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV 280
+H+AD T Y+ PG+L +++A++R TSV+L T PM PEKL+ + SLR E +
Sbjct: 254 GVHIADVTHYVRPGTLVEQEALERATSVYLVDRTVPMLPEKLSNKLCSLRPNEEKLCFSA 313
Query: 281 SVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLN---LEEEAELKILSEAAALRLQ 337
L+ I +II+ Y YE A + L+ E LK+ A++LR +
Sbjct: 314 VFELNEKAKIITRWFGRTIIESDYRFDYEEAQNTIETKEGPLKNEI-LKLHQLASSLRNE 372
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-- 395
R +GAI E +++V P I +Y ++ D L+ E M+L + +A +
Sbjct: 373 -RFSKGAISFERPEMKVEVDEAGKP---IRVYQKESKDSNW-LIEEFMLLANKEVAFFVG 427
Query: 396 -GSFNNLALPYRGQPQSNID--------VSAFAH--LPEGPVR--SSAIVKIMRA----- 437
++ YR + N+D V F + P R S I K++
Sbjct: 428 GKGRDSKTFVYRIHEEPNMDKVTILRTFVKHFGYDMSPTKNARELSGEINKLLSTVKGRP 487
Query: 438 --AAID---FRKPVR---------HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
+AI+ R R H L Y FTSPIRRY D++ H ++ A +
Sbjct: 488 EESAIEIMALRSMARARYSTDNAGHYGLAFDYYTHFTSPIRRYPDMMVH-RLLALYLDNA 546
Query: 484 PPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLR 522
G E + + ++A S++Y ++EF++
Sbjct: 547 KSQDKGYYEDRCKYSSEREQLATEAERASIKYKMVEFMQ 585
>gi|346722806|ref|YP_001180114.2| ribonuclease R [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|345106777|gb|ABP66923.2| ribonuclease R [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 710
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 185/392 (47%), Gaps = 60/392 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + R DL ++ ID ++A + DDA+S +L +G + +H+AD + Y++P + D
Sbjct: 245 EEEIEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTHLD 304
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
++A +RGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 REAFRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEIDKNGNVVKHDIF 362
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEA-----------ELKILSEAAALRLQWRLQQGAI 345
S+I+ +TY + T++L EE+ +L+++ E A + + R+++GA+
Sbjct: 363 ESVIRSKERMTYTNVTKILK---EEDKDLLKRYEHIREDLELMRELALILREKRMKRGAL 419
Query: 346 DTATLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
D ET KV ++ PI I Y + + +++ E M++C E +A + + N+
Sbjct: 420 DFDFDET--KVILDKNGRPIDIRRY---ELTISNKIIEEFMLICNETVANHFFWLNVPFL 474
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 475 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKIHPKALQAILEQSRGTPEERVIHTLCLR 534
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE- 492
++ A + + H L Y FTSPIRRY DL+ H +K L+G+ A +L
Sbjct: 535 SLKKARY-CEENLGHFGLSTDYYCHFTSPIRRYPDLVIHRIMKDVLKGKMTEKKAERLRR 593
Query: 493 ---GMASIVNMQTRIARRLSNTSLRYWIIEFL 521
+A + + +IA ++ +EF+
Sbjct: 594 KMPEIAKWTSQREQIAEEAERETVELKKVEFM 625
>gi|157693783|ref|YP_001488245.1| ribonuclease R [Bacillus pumilus SAFR-032]
gi|157682541|gb|ABV63685.1| ribonuclease R [Bacillus pumilus SAFR-032]
Length = 780
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 162/343 (47%), Gaps = 50/343 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + + ID +A +LDDA++ +L DG+ K+ +H+AD + Y+ S D
Sbjct: 242 EKDLEGRRDLRNETIVTIDGADAKDLDDAVTVQKLDDGKYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ +V+ +G + ++ + S
Sbjct: 302 QEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMVIDRNGKVVKHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAIDT 347
+IK T +TY ++L ++++ EL + + + A + + R+++GA+D
Sbjct: 362 VIKTTERMTYSDVNKIL---VDQDEELLDKYEPLVPMFQEMEKLAEILREKRMERGAVDF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V D E V + A +L+ E M++ E +A + + N+ YR
Sbjct: 419 DFKEAKVLV----DEEGAAKDVVVRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 474
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ N + V+ F ++ PE V + +++ M+
Sbjct: 475 HEEPNPEKLQRFLEFVTTFGYIVKGTSTNIHPRALQSVLDAVRDQPEEVVIQTVMLRSMK 534
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A D + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 535 QAKYD-PESIGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|29348486|ref|NP_811989.1| ribonuclease R [Bacteroides thetaiotaomicron VPI-5482]
gi|298385815|ref|ZP_06995372.1| ribonuclease R [Bacteroides sp. 1_1_14]
gi|29340390|gb|AAO78183.1| ribonuclease R [Bacteroides thetaiotaomicron VPI-5482]
gi|298261043|gb|EFI03910.1| ribonuclease R [Bacteroides sp. 1_1_14]
Length = 718
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS ++DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKTGDFKEEV-LMLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKVGRVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSESKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|451821905|ref|YP_007458106.1| ribonuclease R [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451787884|gb|AGF58852.1| ribonuclease R [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 763
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 154/337 (45%), Gaps = 45/337 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL L++ ID ++A +LDDA+S +L +G K+ +H+AD + Y+ + DK+A+KR
Sbjct: 286 RRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNYKLGVHIADVSHYVRENNPLDKEALKR 345
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P KL+ SL A+T + +++ G + + + SIIK
Sbjct: 346 ATSVYLIDRVIPMLPRKLSNGICSLNPRVDRLALTCFMEINNSGKVVNHEIVESIIKTNE 405
Query: 305 MLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L + EE + K++ E + + R ++GAID E +I +
Sbjct: 406 RMTYTDVTKILKDHDEELIKRYDYLYEDFKLMEELCNILREKRTRRGAIDFEIAEAKITL 465
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS 416
+ P I + D+ + A R++ E M++ E +A + + +L YR N D
Sbjct: 466 NDLGKP---IEIKPYDR-EIANRVIEEFMLVANETVAEHMFWTHLPFVYR--IHENPDEE 519
Query: 417 AFAHLPE----------------------------GPVRSSAIVKIMRAAAIDFR-KPVR 447
A E G + + ++ + + R P
Sbjct: 520 KLAKFKEFVYNLGYNVHWTEEIIPKSFQEILEKVKGKNEETVVSTLLLRSMMQARYAPEC 579
Query: 448 HGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGE 482
G GL Y FTSPIRRY DL H +K L GE
Sbjct: 580 TGHFGLAAQYYCHFTSPIRRYPDLQIHRIIKEYLHGE 616
>gi|422854675|ref|ZP_16901339.1| ribonuclease R [Streptococcus sanguinis SK160]
gi|325696170|gb|EGD38061.1| ribonuclease R [Streptococcus sanguinis SK160]
Length = 782
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 157/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL ++ ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLREEVIFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++IK + +TY +++ N E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTIFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASTFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|392529839|ref|ZP_10276976.1| ribonuclease R [Carnobacterium maltaromaticum ATCC 35586]
Length = 807
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 155/333 (46%), Gaps = 44/333 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DLT+ + ID ++A +LDDA++ +L +G + +H+AD + Y+ S D +A +
Sbjct: 260 NRRDLTNEMIVTIDGEDAKDLDDAVTVRKLDNGNYHLGVHIADVSYYVTEDSALDGEAFE 319
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L PM P +L+ SL E ++ + ++S G + + + S+I +
Sbjct: 320 RATSVYLTDRVIPMLPHRLSNGLCSLNPNEDRLTMSCEMEINSAGEVVNHDIFPSVIHSS 379
Query: 304 YMLTYESATE-LLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+TY + + L+ +LE AE +++ E L + R +GAID E +I
Sbjct: 380 KRMTYTAVNQILMEKDLEVRAEYQEFVPMFELMGELHELLVNKRQARGAIDFEAPEAQII 439
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
V N PE I+ + RL+ M+ E +A + ++ YR Q + D
Sbjct: 440 VNNEGHPEEIVMRH----RGIGERLIESFMLSANETVAEHYFKLDVPFIYRVHEQPDSDR 495
Query: 415 -------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAIDFRK 444
V+AF L PE V S+ +++ M+ A D +
Sbjct: 496 MQRFMEFVTAFGILMKGTSGEVSPKQLQKVLRGVSGEPEEAVISTMLLRSMKQAKYD-AE 554
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
+ H LG Y FTSPIRRY DL+ H +++
Sbjct: 555 ALGHFGLGAEFYTHFTSPIRRYPDLIVHRLIRS 587
>gi|423300891|ref|ZP_17278915.1| ribonuclease R [Bacteroides finegoldii CL09T03C10]
gi|408472226|gb|EKJ90754.1| ribonuclease R [Bacteroides finegoldii CL09T03C10]
Length = 718
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 170/382 (44%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +++G +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRSIKNGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEIKDSRIAHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDYKEEV-LMLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L + +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGRVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR++ ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTNGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSEAKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|306829349|ref|ZP_07462539.1| ribonuclease R [Streptococcus mitis ATCC 6249]
gi|304428435|gb|EFM31525.1| ribonuclease R [Streptococcus mitis ATCC 6249]
Length = 784
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 163/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G +A Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVAHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLENMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|375012907|ref|YP_004989895.1| ribonuclease R [Owenweeksia hongkongensis DSM 17368]
gi|359348831|gb|AEV33250.1| ribonuclease R [Owenweeksia hongkongensis DSM 17368]
Length = 715
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 175/389 (44%), Gaps = 46/389 (11%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++ + R+D + + ID +A + DDALS +L++G ++ +H+AD T Y+ PGS
Sbjct: 250 SKEEIAKRRDFRDVLTFTIDPHDAKDFDDALSLRKLENGNWEIGVHIADVTHYVTPGSEL 309
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
+++A+KR TSV+L PM PEKL+ + SLR E +T S V D ++
Sbjct: 310 EEEAVKRATSVYLVDRVVPMLPEKLSNKVCSLRPHE--EKLTFSAVFEMDENANVLNEWF 367
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++I + Y A E++ A E+ I++ A + Q R++ GA+ +E +
Sbjct: 368 GRTVIYSDHRFAYADAQEVIETGKGTLAEEILIMNGLAKILRQQRMKSGALAFDKVEVKF 427
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYR-- 406
++ +P +Y ++ D A L+ E M+L +++A + G ++ YR
Sbjct: 428 ELDEENNP---TGVYFKESKD-ANHLIEEFMLLANKSVARFIGKGKNGKPSDKTFVYRIH 483
Query: 407 --GQPQSNIDVSAFAHLPEGPVRSSAIVKIMR--------------------------AA 438
+P +D+S F V + I R A
Sbjct: 484 DEPKPDRLMDLSNFVKQFGYQVDTKNRNGISRSLNKMLSDVKGKGEANMIETLTIRSMAK 543
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
A+ + + H L Y FTSPIRRY D++ H ++ L G P + E +
Sbjct: 544 AVYSTQNIGHYGLAFDYYTHFTSPIRRYPDMMVHRLLQHYLDG-GNPVNKNTYEELCEHS 602
Query: 499 NMQTRIARRLSNTSLRYWIIEFLRRQPKE 527
+ + ++A S++Y ++F+ + E
Sbjct: 603 SDREKLATEAERDSIKYMQVKFMEKHVGE 631
>gi|389854753|ref|YP_006356997.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
NZ9000]
gi|300071175|gb|ADJ60575.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 812
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 162/346 (46%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R D + + ID +A +LDDA+ A RL +G ++ +H+AD + Y+ S D
Sbjct: 246 ESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPLD 305
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 306 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RLNRLTQSCVMEISPEGRVVNYQIS 363
Query: 297 NSIIKPTYMLTYESATELLHLN---LEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ + LE+ A++ KI+ E + R Q+GAID T
Sbjct: 364 QSIIKTTERMTYDAVNQMIAGDKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDT 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + + A R++ M+ E +AT+ + L YR
Sbjct: 424 VEAKIIVNEKGLP---IEIRKRSRG-IAERMIESFMLEANETVATHFEAHGLPFIYRIHE 479
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 480 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G+ P
Sbjct: 540 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGAGKIP 584
>gi|422882685|ref|ZP_16929141.1| ribonuclease R [Streptococcus sanguinis SK355]
gi|332358718|gb|EGJ36541.1| ribonuclease R [Streptococcus sanguinis SK355]
Length = 782
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 157/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLERRLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T SV++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSVIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDCMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|227537978|ref|ZP_03968027.1| exoribonuclease R [Sphingobacterium spiritivorum ATCC 33300]
gi|227242054|gb|EEI92069.1| exoribonuclease R [Sphingobacterium spiritivorum ATCC 33300]
Length = 709
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 115/453 (25%), Positives = 195/453 (43%), Gaps = 57/453 (12%)
Query: 120 KDSDRVLLAVAQRPDGKKNWM--VYDQNGASCSIKPQQVTFVV---------PGVEKFDH 168
KD ++V++++ + P G KN + V D G + + P VEK +
Sbjct: 182 KDGEKVVVSITEWPKGSKNPVGRVKDVLGKKGENNTEMNAILADYGFPLSFPPEVEK-EA 240
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
S + E +L R+D + + ID +A + DDA+S +L +G ++ +H+AD +
Sbjct: 241 NSFSAVIDNTE--ILKRRDFRTIPTFTIDPADAKDFDDAISFQQLPNGHYEIGVHIADVS 298
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
+++P + DK+A +R TSV+L PM PE+L+ + SLR E + L
Sbjct: 299 HFVKPDTALDKEAFERATSVYLVDRVIPMLPERLSNDLCSLRPNEDRLCFSAVFELDDKA 358
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDT 347
+I + ++I +YE A E++ + E+ L+E A + + + + GAI
Sbjct: 359 NIHDQWFGRTVIHSDRRFSYEEAQEVIENKAGDFTTEILKLNELAYILREKKFKNGAISF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLA 402
+ E +K E+ +P +Y + + D A +L+ + M+L +A Y N L
Sbjct: 419 ESEE--VKFTLDENGKPT-GVYTKVRKD-AHKLIEDFMLLANRKVAEYIGKQGKGKNKLT 474
Query: 403 LPYRGQ----PQSNIDVSAFAHL---------------------------PEGPVRSSAI 431
YR P++ S FA E + +S
Sbjct: 475 FVYRFHDLPNPETLTTFSQFASRFGHKLTIRSDKETAKSLNALMTKIEGSKEQNLLTSLA 534
Query: 432 VKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQL 491
V+ M A A+ K H L Y FTSPIRRY D++ H ++ L G +A
Sbjct: 535 VRSM-AKAVYTTKNTSHYGLAFDYYTHFTSPIRRYPDVMVHRLLQFYLDG-GQKVNAEHY 592
Query: 492 EGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQ 524
E M+ + + A S++Y EFL+ Q
Sbjct: 593 EKMSEHSSQMEKKAAEAERASIKYKQAEFLQDQ 625
>gi|387128412|ref|YP_006297017.1| 3'-to-5' exoribonuclease RNase R [Methylophaga sp. JAM1]
gi|386275474|gb|AFI85372.1| 3'-to-5' exoribonuclease RNase R [Methylophaga sp. JAM1]
Length = 722
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 150/340 (44%), Gaps = 45/340 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + +R DL L + ID +A + DDA+ A +L G ++++ +AD + Y++P D
Sbjct: 258 QDAIHDRLDLRELPLVTIDGSDARDFDDAVYAEKLDSGNWRLWVAIADVSYYVKPEDNLD 317
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCN-AVTVSVVLHSDGSIAEYSVDN 297
KDA +RGTSV+ P+ PM PE L+ G+ EV + ++++ DG I Y
Sbjct: 318 KDAQERGTSVYFPSQVIPMLPEALS-NGLCSLNPEVDRLCMACEMIINQDGEIESYKFHQ 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
+++ L YE +L N E L+ + E + L+ R ++GAID
Sbjct: 377 AVMNSKARLIYEQVASILQENDSELRNQYAHVLPGLETMYELFHVMLKAREKRGAIDFEM 436
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
ET+ D I+ Q + A RL+ E MI A A Y + L + YR
Sbjct: 437 TETQFMF----DENRKISSIEPRQRNDAHRLIEEFMIAANVAAAKYLLASKLPVLYRVHE 492
Query: 410 QSNID------------------------------VSAFAHLPEGPVRSSAIVKIMRAAA 439
+++ + + P+G + + +++ M+ A
Sbjct: 493 VPSVEKLSALREFLGELGLFLGGGDEPEPGHYASLLKTVSKRPDGHLLQTVMLRSMKQAV 552
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ H LGL Y FTSPIRRY DLL H +K +
Sbjct: 553 YS-PDNLGHFGLGLEAYAHFTSPIRRYPDLLVHRAIKHAI 591
>gi|206603225|gb|EDZ39705.1| Exoribonuclease II [Leptospirillum sp. Group II '5-way CG']
Length = 744
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 146/332 (43%), Gaps = 53/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL HL++ ID D A + DDALS + DG ++ IH+AD Y+ PGS DK+A +
Sbjct: 252 NRVDLRHLEIMTIDGDRARDFDDALSVVESPDGTFQIGIHIADVAAYVLPGSELDKEAFR 311
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+ P PMFPE L+ +SL E A TV V + G + E S+ S+I+
Sbjct: 312 RGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLESSIFRSVIRSR 371
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQW---------RLQQGAIDTATLETRI 354
TY +L + E K + LR W R Q G++D E I
Sbjct: 372 LRATYSRVHPILAGESTDSPESKF---SVQLRSLWTLAKKLRDERFQNGSLDFDLPEPEI 428
Query: 355 KVANPEDPEPIIN--LYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR----GQ 408
+ +P II Y+ + LV E M+L +A + YR
Sbjct: 429 VLDLRGEPVDIIRSPRYL------SHFLVEEFMLLANRIVAAELTRRFSMAMYRVHETPS 482
Query: 409 PQSNIDVSAF-----AHLP---EGPVRSS--------------------AIVKIMRAAAI 440
P+ + F +P EG +R+S ++++ ++ A
Sbjct: 483 PEKTESLGIFLGALGISIPKRKEGRMRASDLSAVLESTRGTPLEKMVHFSVLRSLKQARY 542
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D P+ H L + Y FTSPIRRY DL+ H
Sbjct: 543 DV-YPLGHFGLAMDDYTHFTSPIRRYPDLIVH 573
>gi|343514252|ref|ZP_08751332.1| exoribonuclease II [Vibrio sp. N418]
gi|342800564|gb|EGU36082.1| exoribonuclease II [Vibrio sp. N418]
Length = 672
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 126/460 (27%), Positives = 199/460 (43%), Gaps = 63/460 (13%)
Query: 88 RVFAKVKVSSGELLEDKLENQVLQKGLLLEFKK--------DSDRVLLAVAQRP-DGKKN 138
R +VK+ G+L Q+ ++ L + KK + D V+ + Q P G
Sbjct: 85 RFIGRVKMFKGKLNVTPDHPQLKKQSLKAKVKKGLNPNDFAEGDWVVAHLVQHPLKGDAG 144
Query: 139 WMV---YDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYA 195
++V A I P VT + + I ++ K +D L R D+TH+
Sbjct: 145 FLVEISKKITDADDKIAPWWVTLAENDLPNSEPAGIDHWELK-DDADLERVDMTHVPFVT 203
Query: 196 IDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATY 255
ID ++DDAL A + +G ++ I +ADPT YI P S DK A +RG +++LP
Sbjct: 204 IDGQSTKDMDDALYAKKNANGDFELTIAIADPTAYITPDSDMDKVARERGFTIYLPGRNI 263
Query: 256 PMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATEL 314
PM P LA + SL +GEV A+ +V + DG I + + IK L Y+ ++
Sbjct: 264 PMLPRDLADDLCSLIEGEVRPALCCTVTVDKDGVIGDDIHFFAAHIKSHARLVYDHVSDW 323
Query: 315 LHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPII 366
L E + ++ L E + R WR + + R +++ D ++
Sbjct: 324 LENGESSEWQPNDEIAQIVRDLYEFSQARANWRQNNAVVFPDRPDYRFELSEDND---VV 380
Query: 367 NLYVEDQADPAMRLVSEMMI---LCG----EAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
++ D A RLV E MI +C A G FN A +P+ DV A
Sbjct: 381 AIHA-DMRRTANRLVEESMITANICAGKTLRANFECGVFNTHA---GFKPEKIADVVALV 436
Query: 420 HLPEG--PVRSSAIVKIMRAAA------------IDFR------------KPVRHGVLGL 453
+ PEG P + +I + AA +D R +P+ H +GL
Sbjct: 437 N-PEGELPFTAESIATLEGFAALRRWLGQQDTSYLDNRIRKAQAYSEMGNQPLPHYAMGL 495
Query: 454 PGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEG 493
Y +TSPIR+Y D++ H +KA + G+ P +A + G
Sbjct: 496 DIYATWTSPIRKYGDMINHRMLKAHVLGKEPVQTADETVG 535
>gi|422848230|ref|ZP_16894906.1| ribonuclease R [Streptococcus sanguinis SK115]
gi|325690762|gb|EGD32763.1| ribonuclease R [Streptococcus sanguinis SK115]
Length = 782
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL ++ ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLREEVIFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSNYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHII 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGMASSMSQQALQDIMEAVKDQPYEEVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVQ 575
>gi|417948597|ref|ZP_12591741.1| exoribonuclease II [Vibrio splendidus ATCC 33789]
gi|342809544|gb|EGU44661.1| exoribonuclease II [Vibrio splendidus ATCC 33789]
Length = 668
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 182/416 (43%), Gaps = 47/416 (11%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQN----GASCSIKPQQVTFVVPGVEKF 166
QKGL E K+ D V+ + Q P N + + A I P VT +
Sbjct: 116 QKGLNPETLKEGDWVVAHIIQHPLKGDNGFLAQISEKITDAHDKIAPWWVTLAQNDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ + I N+ Q +D L R D+TH+ ID + ++DDAL A + ++G ++ I +AD
Sbjct: 176 EPEGIDNW-QINDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA SL + EV A+ +V +
Sbjct: 235 PTAYISPDDAMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSK 294
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQ 337
DG I + + IK L Y++ ++ L E+ A + L E A R
Sbjct: 295 DGVIGDDIKFFAANIKSHARLAYDNVSDWLETGASEKWQPSEEIAAIVSDLHEFAQARSA 354
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAIA- 393
WR + + R +++ D ++ ++ D A +LV E MI +C +
Sbjct: 355 WRSANAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANKLVEESMISANICAGRVLK 410
Query: 394 ---TYGSFN--------------NLALPYRGQPQSN---IDVSAFAHLPE--GPVRSSAI 431
G FN L P P + + + FA L G + S+
Sbjct: 411 ESFNQGVFNCHSGFKAEKVADVLELVNPQAETPFTEEQIVSLEGFAALRRWLGSLDSNYY 470
Query: 432 ---VKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
++ +A + +P H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 471 DNRIRKFQAYSEISNEPAPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILGKAP 526
>gi|262341063|ref|YP_003283918.1| ribonuclease R [Blattabacterium sp. (Blattella germanica) str. Bge]
gi|262272400|gb|ACY40308.1| ribonuclease R [Blattabacterium sp. (Blattella germanica) str. Bge]
Length = 643
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 147/326 (45%), Gaps = 46/326 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ ++ + ID A + DDALS +L D ++ +H++D + Y+E GSL DK+A R
Sbjct: 175 RRDMRNINTFTIDPLNAKDFDDALSIRKLNDDIWEIGVHISDVSHYVEEGSLLDKEAYSR 234
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TS++ PM P+ L+ + SL+ E + + + S G I + +II+
Sbjct: 235 STSIYFVGKVIPMLPKILSNDLCSLQPKEDKLSFSYIFNIDSQGEILKSWFGKTIIRSNK 294
Query: 305 MLTYESATELLHLN----LEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
TYE +++ EE L LS+ + RL+ G+ID T+E + + +
Sbjct: 295 RFTYEEVQKIIDKKKGDFYEEIYTLFFLSKILTKK---RLKNGSIDLETVEVKFHLDEKK 351
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN------NLALPYRGQPQ---- 410
+P I+L++E D A RL+ E M+L I+ + S N N YR +
Sbjct: 352 NP---ISLHLEKNND-AHRLIEEFMLLANRKISEFVSLNFNGNPSNRLFIYRVHDKPDFQ 407
Query: 411 ------------------SNIDVSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPV 446
N+ S L PE + + I++ M A K +
Sbjct: 408 KIFLIKKIIEPLGYFLDFKNLKTSINCLLKKIKGKPEQNMIENLILRSMSKAKYS-TKNI 466
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY D++AH
Sbjct: 467 GHYGLSFFYYTHFTSPIRRYSDIIAH 492
>gi|125624388|ref|YP_001032871.1| exoribonuclease R [Lactococcus lactis subsp. cremoris MG1363]
gi|124493196|emb|CAL98161.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
MG1363]
Length = 819
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 162/346 (46%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R D + + ID +A +LDDA+ A RL +G ++ +H+AD + Y+ S D
Sbjct: 253 ESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RLNRLTQSCVMEISPEGRVVNYQIS 370
Query: 297 NSIIKPTYMLTYESATELLHLN---LEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ + LE+ A++ KI+ E + R Q+GAID T
Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLP---IEIRKRSRG-IAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G+ P
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGAGKIP 591
>gi|150015522|ref|YP_001307776.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
gi|149901987|gb|ABR32820.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
Length = 755
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 167/375 (44%), Gaps = 45/375 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L++ ID ++A +LDDA+S +L +G K+ +H+AD T Y++ S D
Sbjct: 263 EEEYKGRRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHIADVTHYVKENSPLD 322
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P KL+ SL + +T++ + D G + ++ +
Sbjct: 323 KEALKRATSVYLIDRVVPMLPRKLSNGICSLNPR--VDRLTLTCFMEIDHKGKVVDHEIV 380
Query: 297 NSIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTA 348
S+IK +TY+ T++L N EE + K++ E + R ++GAID
Sbjct: 381 ESVIKTNERMTYKDVTKILRDNDEELIKRYDYLVDDFKMMEELCGILRNKRTKRGAIDFE 440
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
E +I + P I + D+ + + R++ E M+ E +A + +L YR
Sbjct: 441 IAEAKITLNELGKP---IEIKPYDR-EISNRMIEEFMLAANETVAEHMFGTHLPFVYRIH 496
Query: 407 ---------------------GQPQSNIDVSAFAHLPE---GPVRSSAIVKIMRAAAIDF 442
Q I +F + E G + + ++ + +
Sbjct: 497 ESPDEEKLAKFKEFVYNLGYAIQWTEEIRPKSFQEILEKVKGKNEETVVSTLLLRSMMQA 556
Query: 443 R-KPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
R P G GL Y FTSPIRRY DL H +K L GE +L+ +
Sbjct: 557 RYAPECSGHFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYLHGEVDGTRINKLKNIVGYAA 616
Query: 500 MQTRIARRLSNTSLR 514
Q+ R + + R
Sbjct: 617 KQSSEMERKAQDAER 631
>gi|392428806|ref|YP_006469817.1| VacB/Rnb family exoribonuclease [Streptococcus intermedius JTH08]
gi|419776515|ref|ZP_14302437.1| ribonuclease R [Streptococcus intermedius SK54]
gi|383845926|gb|EID83326.1| ribonuclease R [Streptococcus intermedius SK54]
gi|391757952|dbj|BAM23569.1| VacB/Rnb family exoribonuclease [Streptococcus intermedius JTH08]
Length = 779
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 155/334 (46%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R DL + + ID +A +LDDA+ +L +G ++ +H+AD + Y++ GS
Sbjct: 242 SKKDFEGRLDLRNEITFTIDGADAKDLDDAVHIKKLSNGHFELGVHIADVSYYVQEGSEL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + +++V
Sbjct: 302 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDQKGRVVKHTV 359
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKI-------LSEAAALRLQWRLQQGAIDTA 348
++IK + +TY +++ + E+ A K ++E A+ R ++GA++
Sbjct: 360 TQTVIKTAFRMTYSDVNDIITGDKEKRAAFKTIVPSIEQMTELHAILETMRFKRGALNFD 419
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P II Q A R++ M++ E +A + + NL YR
Sbjct: 420 TKEAKILVNKTGRPVDIILR----QRGVAERMIESFMLVANETVAEHFARLNLPFLYRIH 475
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S SA+ IM+A + V
Sbjct: 476 EEPKAEKVQKFIDYASTFGVRVYGTANSISQSALQDIMKAVHGQPYEEVLSMMLLRSMQQ 535
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 536 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVH 569
>gi|422884558|ref|ZP_16931006.1| ribonuclease R [Streptococcus sanguinis SK49]
gi|332358988|gb|EGJ36809.1| ribonuclease R [Streptococcus sanguinis SK49]
Length = 782
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHAI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSKHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|118442907|ref|YP_877499.1| ribonuclease R [Clostridium novyi NT]
gi|118133363|gb|ABK60407.1| ribonuclease R [Clostridium novyi NT]
Length = 745
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 168/367 (45%), Gaps = 41/367 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL + + ID ++A +LDDA+S +L +G + +H+AD + Y++ S DK+A+KR
Sbjct: 244 REDLRDVVMVTIDGEDAKDLDDAVSIEKLDNGNYLLGVHIADVSHYVKEKSPLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P++L+ SL A+T + +++ G + Y + S+IK
Sbjct: 304 ATSVYLINKVIPMLPKELSNGICSLNPKVDRLAMTCFMEINNKGKVVNYRITKSVIKTNE 363
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L E E K++ E + R+ +GAID E++I +
Sbjct: 364 RMTYTDVTKMLRDKDEATIEKYKDLYKYFKLMEELCEILYNKRISRGAIDFEFEESKIIL 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
+ P I++ ++A A R++ E M++C E +A + + + YR + +
Sbjct: 424 DDNGKP---IDVKPYERA-IANRIIEEFMLVCNETVAEHMYWTKIPFVYRIHEDPDEEKL 479
Query: 415 --VSAFAH------LPEGPVRSSAIVKIMRAAAIDFRKPVRH-----------------G 449
FA+ P V A+ +I+ +A + V + G
Sbjct: 480 QKFREFAYNLGYFIKPTKEVHPKALQEIIESARGKKEETVVNTLLLRSLKQARYAPQCVG 539
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
GL Y FTSPIRRY DL+ H +K L G LE ++Q+ R
Sbjct: 540 HFGLAAKYYCHFTSPIRRYPDLIIHRIIKESLDGLIDEKRFKSLENKVDYASVQSSDMER 599
Query: 508 LSNTSLR 514
L+ + R
Sbjct: 600 LAMEAER 606
>gi|15643485|ref|NP_228531.1| vacB protein [Thermotoga maritima MSB8]
gi|403252461|ref|ZP_10918771.1| ribonuclease R [Thermotoga sp. EMP]
gi|418045107|ref|ZP_12683203.1| ribonuclease R [Thermotoga maritima MSB8]
gi|7674335|sp|Q9WZI1.1|RNR_THEMA RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|4981247|gb|AAD35804.1|AE001743_6 vacB protein [Thermotoga maritima MSB8]
gi|351678189|gb|EHA61336.1| ribonuclease R [Thermotoga maritima MSB8]
gi|402812474|gb|EJX26953.1| ribonuclease R [Thermotoga sp. EMP]
Length = 710
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 169/354 (47%), Gaps = 41/354 (11%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ RKDL + ID ++A + DDA+S +L +G + +H+AD + Y++ GS D++
Sbjct: 242 DLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQE 301
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A KRGTSV+L PM P +L+ SL +G+ ++V + + DG + Y V S+I
Sbjct: 302 AFKRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVI 361
Query: 301 KPTYMLTYESATELLH--LNLEEEAELKIL----SEAAALRLQWRLQQGAI-DTATLETR 353
K + YE E L +++E K L E A + + R ++GAI D + E
Sbjct: 362 KSKKRMIYERVNEFLEDPSSMKEYEPFKDLIYNAVELAEILREARRKRGAILDIESDE-- 419
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
+KV E+ + ++++ V + A +L+ E MI E +A L YR + +
Sbjct: 420 VKVILDENGQ-VVDI-VPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDP 477
Query: 414 DV--------------SAFAH-------------LPEGPVRSSAIVKIMRAAAIDFRKPV 446
+ + F+H + + P+RSS ++R+ V
Sbjct: 478 ETIFQLKNYLEAMGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAV 537
Query: 447 RHGVLGLP--GYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
G GL Y FTSPIRRY DL+ H +K L ++ F+ Q+E + ++
Sbjct: 538 NIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLE-QNGYFTPEQIEKFSKVL 590
>gi|313885321|ref|ZP_07819072.1| ribonuclease R [Eremococcus coleocola ACS-139-V-Col8]
gi|312619427|gb|EFR30865.1| ribonuclease R [Eremococcus coleocola ACS-139-V-Col8]
Length = 812
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 145/326 (44%), Gaps = 41/326 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL + ID A +LDDA+S + DG ++ +H+AD + Y++ GS D++A +
Sbjct: 259 GRHDLRDQLIITIDGASAKDLDDAISLEKNSDGSYELGVHIADVSHYVQKGSPIDQEAYQ 318
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P+KL+ SL E +T + +++ G + + + S+I +
Sbjct: 319 RGTSVYLTDRVVPMLPQKLSNGLCSLNPKEDRLTITCQMTINTQGKVTAFDIYLSVINSS 378
Query: 304 YMLTYESATELL----HLNLEEEAELKILSEAAALRL---QWRLQQGAIDTATLETRIKV 356
Y +TY E+L L + + + +L + AAL + RL++GA++ T E I V
Sbjct: 379 YRMTYRDVNEILAGDAKLRQDYQEIVPMLEDMAALHKILEKMRLKRGALNFDTKEAEIIV 438
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN---- 412
P+ I V Q R++ M+ E +A Y L + YR Q +
Sbjct: 439 DEEGQPQDI----VVRQRQTGERMIESFMLAANETVAGYFMAKQLPMVYRIHEQPDEEKM 494
Query: 413 IDVSAFAHLPEGPVRSSAIV--------KIMRAAAIDFR------------------KPV 446
+ + FA P+ A + + DF +P+
Sbjct: 495 LRFAEFASSLGVPLGGHAATIKPKQLQESLKKVQGQDFESVLAMIMLRSMQQAKYSIEPL 554
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 555 GHYGLATKEYTHFTSPIRRYPDLMVH 580
>gi|210618048|ref|ZP_03291883.1| hypothetical protein CLONEX_04116 [Clostridium nexile DSM 1787]
gi|210149041|gb|EEA80050.1| hypothetical protein CLONEX_04116 [Clostridium nexile DSM 1787]
Length = 722
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 162/339 (47%), Gaps = 43/339 (12%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ R D+ ++ ID ++A +LDDA+S + + K+ +H+AD T Y++ S D++
Sbjct: 243 DMAGRMDIRDWQMVTIDGEDAKDLDDAISLTK-EGENYKLGVHIADVTNYVQEKSALDRE 301
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A KRGTSV+L PM P L+ SL +GE A++ + ++ G++ +Y + ++I
Sbjct: 302 AYKRGTSVYLVDRVIPMLPHILSNGICSLNEGEDRLALSCIMTINDKGNVVDYKIAETVI 361
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
+TY S ++L EEE++ +++ + A + + R ++G+ID ET
Sbjct: 362 CVDRRMTYTSVKKILEEQDEEESKKYEEFVPMFQMMEKVAGILREKRKKRGSIDFDFPET 421
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ + P I L D+ + A +++ + M+L E +A + + + YR Q +
Sbjct: 422 KMVLDEQGKP---IELKPYDR-NVATKIIEDFMLLANETVAEHYFWQEIPFVYRTHEQPD 477
Query: 413 --------IDVSAFA---HLPEGPVRSSAIVKIM-------------RAAAIDFRK---- 444
I ++ F H+ VR I K++ R A ++
Sbjct: 478 EEKIQKLAIFINNFGHSMHIANNAVRPKEIQKLLAKVEGTNEEALISRLALRSMKQAKYT 537
Query: 445 PVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRG 481
P G GL Y FTSPIRRY DL H +K LRG
Sbjct: 538 PENTGHFGLATTYYCHFTSPIRRYPDLQIHRIIKEDLRG 576
>gi|424824930|ref|ZP_18249917.1| putative ribonuclease [Chlamydophila abortus LLG]
gi|333410029|gb|EGK69016.1| putative ribonuclease [Chlamydophila abortus LLG]
Length = 682
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 174/405 (42%), Gaps = 57/405 (14%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL L + ID A + DDA+S +
Sbjct: 188 VIEETHHFSQKHISQALR-------SRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNY 240
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P LA SL+ AV
Sbjct: 241 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALADNLCSLKPNVDRLAV 300
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 301 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 359
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 360 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 415
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 416 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 474
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 475 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFHPMSIEE- 532
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQP 525
+LE + + Q RIA + N ++ +FL+ QP
Sbjct: 533 ----TRLEHIVRACSTQERIAAKAEFAFENLKKNRFLHKFLKEQP 573
>gi|423098589|ref|ZP_17086334.1| ribonuclease R [Listeria innocua ATCC 33091]
gi|370795047|gb|EHN62784.1| ribonuclease R [Listeria innocua ATCC 33091]
Length = 793
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS DK+
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDKE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L EE E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEELREKYAPIVPMLEAMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|385838552|ref|YP_005876182.1| 3'-to-5' exoribonuclease RNase R [Lactococcus lactis subsp.
cremoris A76]
gi|358749780|gb|AEU40759.1| 3'-to-5' exoribonuclease RNase R [Lactococcus lactis subsp.
cremoris A76]
Length = 810
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 161/346 (46%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R D + + ID +A +LDDA+ A RL +G ++ +H+AD + Y+ S D
Sbjct: 246 ESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPLD 305
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 306 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RLNRLTQSCVMEISPEGRVVNYQIS 363
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE+ A++ KI+ E + R Q+GAID T
Sbjct: 364 QSIIKTTERMTYDAVNQMIAGAKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDT 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + + A R++ M+ E +AT+ + L YR
Sbjct: 424 VEAKIIVNEKGLP---IEIRKRSRG-IAERMIESFMLKANETVATHFEAHGLPFIYRIHE 479
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 480 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G+ P
Sbjct: 540 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGAGKIP 584
>gi|422859716|ref|ZP_16906360.1| ribonuclease R [Streptococcus sanguinis SK330]
gi|327470599|gb|EGF16055.1| ribonuclease R [Streptococcus sanguinis SK330]
Length = 782
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 157/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLVGRLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDEEKAGQFKAIVPSIDSMVQLHEILERMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EDPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|380692948|ref|ZP_09857807.1| ribonuclease R [Bacteroides faecis MAJ27]
Length = 718
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS ++DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKAGDFKEEV-LMLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKVGRVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H L Y FTSPIRR+ D++ H V + G S + E + +
Sbjct: 551 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSETKYEDLCDHSS 608
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 609 NMEQIAANAERASIKYKQVEFM 630
>gi|414074159|ref|YP_006999376.1| Exoribonuclease R, VacB family [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413974079|gb|AFW91543.1| Exoribonuclease R, VacB family [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 810
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 161/346 (46%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R D + + ID +A +LDDA+ A RL +G ++ +H+AD + Y+ S D
Sbjct: 246 ESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPLD 305
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 306 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RLNRLTQSCVMEISPEGRVVNYQIS 363
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE+ A++ KI+ E + R Q+GAID T
Sbjct: 364 QSIIKTTERMTYDAVNQMIAGAKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDT 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + + A R++ M+ E +AT+ + L YR
Sbjct: 424 VEAKIIVNEKGLP---IEIRKRSRG-IAERMIESFMLEANETVATHFEAHGLPFIYRIHE 479
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 480 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G+ P
Sbjct: 540 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGAGKIP 584
>gi|409199123|ref|ZP_11227786.1| RNAse r [Marinilabilia salmonicolor JCM 21150]
Length = 720
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 165/383 (43%), Gaps = 52/383 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L++G +V +H+AD T Y+ P ++ DK+A+ R
Sbjct: 259 RRDFRKVTTFTIDPADAKDFDDALSVQKLKNGHWEVGVHIADVTHYVTPDTILDKEAVSR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
TSV+L PM PE+L+ E SLR E + + S V D G + + V ++I
Sbjct: 319 ATSVYLVDRVVPMLPERLSNELCSLRPNE--DKLCFSAVFEMDDQGVVFDSWVGRTVIHS 376
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRIKVANPED 361
+YE A ++ E E + A +L+ R +GAID +E + ++
Sbjct: 377 DRRFSYEEAQSVIEKGEGELKEEILTLNDLAQKLRSIRFSKGAIDFERVEVKFELDEKGK 436
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIA---------------------------- 393
P +N++ + +A A +L+ E M+L +A
Sbjct: 437 P---LNVFFK-EAKEANKLIEEFMLLANRRVAEIIGRNELTPENKRSSKNSKTFVYRIHD 492
Query: 394 -----TYGSFNNLA--LPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKP- 445
Y SF+ + P+ + +S+ + G V+ I+ AI
Sbjct: 493 EPDPEKYESFSKFVRKFGFEAAPKQSETISSSLNRVLGEVQGKKQQNIVETLAIRTMSKA 552
Query: 446 ------VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ H LG Y FTSPIRRY D++ H ++ L G E
Sbjct: 553 VYSTHNIGHYGLGFKHYTHFTSPIRRYPDMMVHRLLQRYLDGGRSASREKYEELCDHSSK 612
Query: 500 MQTRIARRLSNTSLRYWIIEFLR 522
M+ R A TS++Y +EFL+
Sbjct: 613 MEIRAA-DAERTSIKYKQVEFLK 634
>gi|167763926|ref|ZP_02436053.1| hypothetical protein BACSTE_02308 [Bacteroides stercoris ATCC
43183]
gi|167698042|gb|EDS14621.1| ribonuclease R [Bacteroides stercoris ATCC 43183]
Length = 719
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 167/377 (44%), Gaps = 47/377 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D ++ + ID +A + DDALS +L+D +V +H+AD T Y+ GS+ DK+A KR
Sbjct: 263 REDFRNVTTFTIDPKDAKDFDDALSIRKLKDNLWEVGVHIADVTHYVTEGSIIDKEAEKR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G + + +++IK
Sbjct: 323 ATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSAIFEMTDKGEVKNSRIVHTVIKSDR 382
Query: 305 MLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
TYE A +++ + +EE LK+ S A LR + R GAI+ E + ++
Sbjct: 383 RFTYEEAQQIIETKEGDFKEEI-LKLDSLAKILR-EKRFTAGAINFDRYEVKFEIDEQGK 440
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQ-- 410
P +++Y ++ D A +LV E M+L +A + PYR P+
Sbjct: 441 P---VSVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKNKKPKVFPYRIHDLPDPEKL 496
Query: 411 ------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAIDFRK 444
+ DVS + HL E + + ++ M+ A
Sbjct: 497 DNLAQFIARFGYKLRTGGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSVHN 556
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRI 504
+ H L Y FTSPIRRY D+L H + L S + E + + +I
Sbjct: 557 -IGHYGLAFDYYTHFTSPIRRYPDMLVHRLLTKYLDLGGRSVSEQKYEALCEHSSSMEQI 615
Query: 505 ARRLSNTSLRYWIIEFL 521
A S++Y +E++
Sbjct: 616 AANAERASIKYKQVEYM 632
>gi|422878365|ref|ZP_16924831.1| ribonuclease R [Streptococcus sanguinis SK1059]
gi|422928219|ref|ZP_16961161.1| ribonuclease R [Streptococcus sanguinis ATCC 29667]
gi|422931215|ref|ZP_16964146.1| ribonuclease R [Streptococcus sanguinis SK340]
gi|332367339|gb|EGJ45074.1| ribonuclease R [Streptococcus sanguinis SK1059]
gi|339617364|gb|EGQ21990.1| ribonuclease R [Streptococcus sanguinis ATCC 29667]
gi|339620397|gb|EGQ24967.1| ribonuclease R [Streptococcus sanguinis SK340]
Length = 782
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 158/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGCVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK--ILSEAAALRLQ-----WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKEIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q + R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGISERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|225870906|ref|YP_002746853.1| exoribonuclease R [Streptococcus equi subsp. equi 4047]
gi|225700310|emb|CAW94592.1| putative exoribonuclease R [Streptococcus equi subsp. equi 4047]
Length = 774
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 131/513 (25%), Positives = 220/513 (42%), Gaps = 84/513 (16%)
Query: 38 LRRNKSNLGFRLPACRSERQFLNRSGSQSCSVHSLVDSVMQE----LVAIRKRLRVFAKV 93
R NK+ GF + F+ R S V++V+++ L A RV A V
Sbjct: 75 FRANKAGFGFLSVDDNEDDIFIGRDDVGYASDGDRVEAVIKKPANRLKATAAEARVVAIV 134
Query: 94 ----KVSSGELLED----------KLENQVLQKGLLLE---FKKDSDRVLLA-VAQRPDG 135
K G ++ D K +NQ +Q+ + + D ++ A + Q P
Sbjct: 135 ERSLKTVVGRVILDDDHPKYAGYIKSKNQRIQQRIYIAKSPIALDGTEIIKADIVQYPKA 194
Query: 136 KKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDI-----SNFLQKA--------EDNL 182
+++ V G C I Q + +E + DI + L +A + +L
Sbjct: 195 GQDYFV----GTVCDIIGHQHDVGIDVLEVLESMDIVSAFPDDVLAEANAIPDAPSDQDL 250
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R DL ID +A +LDDA+ RL +G +++ +H+AD + Y+ GS D++A
Sbjct: 251 MGRVDLRKETTITIDGADAKDLDDAIHIKRLANGNVELGVHIADVSYYVTEGSALDREAA 310
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSII 300
RGTSV++ PM PE+L+ SL + +T S ++ D G + +Y + S+I
Sbjct: 311 ARGTSVYVTDRVVPMLPERLSNGICSLNPK--VDRLTQSAIMEIDHQGHVVDYQLCQSVI 368
Query: 301 KPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTATLETR 353
T+ +TY + +++ + E E +++ + ++ R+++GA++ T E R
Sbjct: 369 NTTFRMTYSAVNQMIAGDSEALREFDRIADDVSTMVELHQILEAMRVKRGALNFDTQEAR 428
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP-- 409
I V + P + V Q A R++ M+ E +A + S L YR +P
Sbjct: 429 IIVNDKGMPVDV----VLRQRGVAERMIESFMLAANECVAEHFSRAGLPFIYRVHEEPKA 484
Query: 410 ---QSNID-VSAFAHLPEGP---------------VRSSAIVKIMRAAAIDFRKPVR--- 447
Q+ ID SAF +G V S +++ + + R
Sbjct: 485 EKLQTFIDYASAFGIQIQGTANKISQEALQAFMAKVEGSPGAEVLNMMLLRSMQQARYSE 544
Query: 448 --HGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 545 HNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 577
>gi|157150067|ref|YP_001450020.1| ribonuclease R [Streptococcus gordonii str. Challis substr. CH1]
gi|157074861|gb|ABV09544.1| ribonuclease R [Streptococcus gordonii str. Challis substr. CH1]
Length = 782
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 157/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLKGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDEEKAGQFKAIVPSIDSMVQLHKILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ +IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQEIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|332297904|ref|YP_004439826.1| ribonuclease II [Treponema brennaborense DSM 12168]
gi|332181007|gb|AEE16695.1| ribonuclease II [Treponema brennaborense DSM 12168]
Length = 639
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 180/378 (47%), Gaps = 26/378 (6%)
Query: 194 YAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTA 253
YAID + + DDA++ DG V++HVADP + P S D A RGT++++P
Sbjct: 272 YAIDNAWSTDPDDAIAF----DG-THVWVHVADPASIVAPDSTIDTAARNRGTTLYIPEG 326
Query: 254 TYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATE 313
M E+ ++E +L A++ ++L G++A+ + +I+K LTY A
Sbjct: 327 AARMLAEE-SLEDYALGLAPESRALSFKILLDETGAVADCDILKTIVK-VERLTYVQAD- 383
Query: 314 LLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQ 373
+E EL L A + R++ GA+ + E I A + I ++ Q
Sbjct: 384 ----GKKETPELAPLYAIAKRNEERRIKAGAVSISLPEVHIAAAGGDVS---ITPVMQTQ 436
Query: 374 ADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVK 433
A +R E M+L GEA A + + + PY Q + +I LPEG + +
Sbjct: 437 ASAVVR---EFMLLAGEAAARFAFKHAIPFPYVSQERPDIP----KDLPEGLAGQYRLRR 489
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEG 493
MR+ +I P++H LGL Y Q TSP+RRY DL+AH Q++A + G+ +L
Sbjct: 490 CMRSRSIGI-TPLQHAGLGLGMYSQVTSPLRRYGDLVAHQQLRAFI-GKKDLLGKDELLE 547
Query: 494 MASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQ 553
+ + A + S +W + +L R P E +A+++ +K + A L+ E+G +
Sbjct: 548 RIAAGDAAASTAVKAERKSNLHWTLVYLSRNP-EWTGQAVVVE-LKGKQAVCLIPELGQE 605
Query: 554 AAAWVSVGAQIGDEVEVK 571
S Q+ D + V+
Sbjct: 606 TVLNPSRPVQLNDTLTVR 623
>gi|410477723|ref|YP_006765360.1| exoribonuclease R [Leptospirillum ferriphilum ML-04]
gi|406772975|gb|AFS52400.1| exoribonuclease R [Leptospirillum ferriphilum ML-04]
Length = 744
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 148/326 (45%), Gaps = 41/326 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL HL++ ID D A + DDALS + DG ++ IH+AD Y+ PGS DK+A +
Sbjct: 252 NRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVLPGSELDKEAFR 311
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+ P PMFPE L+ +SL E A TV V + G + E S+ S+I+
Sbjct: 312 RGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLESSIFRSVIRSR 371
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQW---------RLQQGAIDTATLETRI 354
TY +L + E K + LR W R Q G++D E I
Sbjct: 372 LRATYSRVHPILAGESTDSPESKF---SVQLRSLWKLAKNLREERFQNGSLDFDLPEPEI 428
Query: 355 KV---ANPED----PEPIINLYVEDQADPAMRLVSEMMIL----------------CGEA 391
+ P D P + + VE+ A R+V+ + E+
Sbjct: 429 VLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRVHETPSPEKTES 488
Query: 392 IATYGSFNNLALPYRGQPQSNI-DVSAFAHLPEG-PVRSS---AIVKIMRAAAIDFRKPV 446
+ + +++P R + + D+SA G P+ ++++ ++ A D P+
Sbjct: 489 LGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSLKQARYDV-YPL 547
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L + Y FTSPIRRY DL+ H
Sbjct: 548 GHFGLAMDDYTHFTSPIRRYPDLIVH 573
>gi|407473557|ref|YP_006787957.1| ribonuclease R [Clostridium acidurici 9a]
gi|407050065|gb|AFS78110.1| ribonuclease R [Clostridium acidurici 9a]
Length = 711
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 178/376 (47%), Gaps = 60/376 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R DL + + ID +A + DDA+S +L++G K+ +H+AD T Y+ S D
Sbjct: 239 EKEIARRLDLRKERTFTIDGPDAKDFDDAVSIEKLENGNYKLGVHIADVTYYVRERSALD 298
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+ RGTSV+L PM PEK++ SLR E + +T+SV++ D G + + +
Sbjct: 299 KEALTRGTSVYLVDRVIPMLPEKISNGVCSLRPNE--DRLTLSVIMEVDSRGKVVDQKIA 356
Query: 297 NSIIKPTYMLTYESATELLH---LNLEEE-----AELKILSEAAALRLQWRLQQGAIDTA 348
++I + L Y+ +++L + L+E+ +LK + + + + R +G+ID
Sbjct: 357 ETVISSSERLIYDDVSDILEKDDVELKEKYKHILTDLKHMEDLCEILINKRKSRGSIDFD 416
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E+RI + P I++ D+ + R++ E M++ E IA Y + + YR
Sbjct: 417 FPESRIILDEKGKP---IDITKYDRR-ISNRIIEEFMLISNETIAEYMYWTEIPFLYRVH 472
Query: 409 PQSNID--------VSAFA-HL---------------------PEGPVRSSAIVKIMR-- 436
++D +S F HL PE V S+ +++ ++
Sbjct: 473 EDPDMDRINEFNKFISNFGYHLKGTQEVHPKELQSLVNKIKGKPEEIVISTLMLRSLKKA 532
Query: 437 --AAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
+A ID G GL Y FT+PIRRY DL H +K + G+ L+
Sbjct: 533 RYSADID-------GHFGLAAEYYSHFTAPIRRYPDLQIHRIIKEFINGKITDKRISTLK 585
Query: 493 G-MASIVNMQTRIARR 507
+ + ++ +++ RR
Sbjct: 586 KILPEVADITSKMERR 601
>gi|424665659|ref|ZP_18102695.1| ribonuclease R [Bacteroides fragilis HMW 616]
gi|404573912|gb|EKA78663.1| ribonuclease R [Bacteroides fragilis HMW 616]
Length = 714
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 165/375 (44%), Gaps = 44/375 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS L+DG +V +H+AD T Y++ GS+ DK+A KR
Sbjct: 259 REDFRKVTTFTIDPKDAKDFDDALSIRPLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G + + + +++I+
Sbjct: 319 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSAIFDITEKGEVRDSRIVHTVIESDR 378
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ + + E+ +L A + R GAI+ E + ++ P
Sbjct: 379 RFTYEEAQQIIETKEGDFKDEILMLDTIAKALREKRFAAGAINFDRYEVKFEIDEKGKP- 437
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALPYR----GQPQ---- 410
I++Y ++ D A +LV E M+L +A LPYR P+
Sbjct: 438 --ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGKAPKGKKAKVLPYRIHDLPDPEKLDN 494
Query: 411 ----------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAIDFRKPV 446
+ DVS + HL E + + ++ M+ A +
Sbjct: 495 LAQFIARFGYRLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSTHN-I 553
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
H L Y FTSPIRR+ D++ H V + G S + E + + +IA
Sbjct: 554 GHYGLAFDFYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSETKYEDLCDHSSNMEQIAA 612
Query: 507 RLSNTSLRYWIIEFL 521
S++Y +EF+
Sbjct: 613 NAERASIKYKQVEFM 627
>gi|331266542|ref|YP_004326172.1| ribonuclease R [Streptococcus oralis Uo5]
gi|326683214|emb|CBZ00832.1| ribonuclease R [Streptococcus oralis Uo5]
Length = 784
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLENMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|116511759|ref|YP_808975.1| exoribonuclease R [Lactococcus lactis subsp. cremoris SK11]
gi|116107413|gb|ABJ72553.1| RNAse R [Lactococcus lactis subsp. cremoris SK11]
Length = 810
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 161/346 (46%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R D + + ID +A +LDDA+ A RL +G ++ +H+AD + Y+ S D
Sbjct: 246 ESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPLD 305
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 306 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RLNRLTQSCVMEISPEGRVVNYQIS 363
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE+ A++ KI+ E + R Q+GAID T
Sbjct: 364 QSIIKTTERMTYDAVNQMIAGAKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDT 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + + A R++ M+ E +AT+ + L YR
Sbjct: 424 VEAKIIVNEKGLP---IEIRKRSRG-IAERMIESFMLEANETVATHFEAHGLPFIYRIHE 479
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 480 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKNKGQPGEMVLSTMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G+ P
Sbjct: 540 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGAGKIP 584
>gi|424868332|ref|ZP_18292081.1| Exoribonuclease II [Leptospirillum sp. Group II 'C75']
gi|124516385|gb|EAY57893.1| ribonuclease R [Leptospirillum rubarum]
gi|387221355|gb|EIJ75926.1| Exoribonuclease II [Leptospirillum sp. Group II 'C75']
Length = 744
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 148/326 (45%), Gaps = 41/326 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL HL++ ID D A + DDALS + DG ++ IH+AD Y+ PGS DK+A +
Sbjct: 252 NRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVLPGSELDKEAFR 311
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+ P PMFPE L+ +SL E A TV V + G + E S+ S+I+
Sbjct: 312 RGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLESSIFRSVIRSR 371
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQW---------RLQQGAIDTATLETRI 354
TY +L + E K + LR W R Q G++D E I
Sbjct: 372 LRATYSRVHPILAGESTDSPESKF---SVQLRSLWKLAKNLREERFQNGSLDFDLPEPEI 428
Query: 355 KV---ANPED----PEPIINLYVEDQADPAMRLVSEMMIL----------------CGEA 391
+ P D P + + VE+ A R+V+ + E+
Sbjct: 429 VLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRVHETPSPEKTES 488
Query: 392 IATYGSFNNLALPYRGQPQSNI-DVSAFAHLPEG-PVRSS---AIVKIMRAAAIDFRKPV 446
+ + +++P R + + D+SA G P+ ++++ ++ A D P+
Sbjct: 489 LGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSLKQARYDV-YPL 547
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L + Y FTSPIRRY DL+ H
Sbjct: 548 GHFGLAMDDYTHFTSPIRRYPDLIVH 573
>gi|423281396|ref|ZP_17260307.1| ribonuclease R [Bacteroides fragilis HMW 610]
gi|404583100|gb|EKA87783.1| ribonuclease R [Bacteroides fragilis HMW 610]
Length = 714
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 165/375 (44%), Gaps = 44/375 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS L+DG +V +H+AD T Y++ GS+ DK+A KR
Sbjct: 259 REDFRKVTTFTIDPKDAKDFDDALSIRPLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G + + + +++I+
Sbjct: 319 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSAIFDITEKGEVRDSRIVHTVIESDR 378
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ + + E+ +L A + R GAI+ E + ++ P
Sbjct: 379 RFTYEEAQQIIETKEGDFKDEILMLDTIAKALREKRFAAGAINFDRYEVKFEIDEKGKP- 437
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALPYR----GQPQ---- 410
I++Y ++ D A +LV E M+L +A LPYR P+
Sbjct: 438 --ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGKAPKGKKAKVLPYRIHDLPDPEKLDN 494
Query: 411 ----------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAIDFRKPV 446
+ DVS + HL E + + ++ M+ A +
Sbjct: 495 LAQFIARFGYRLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSTHN-I 553
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
H L Y FTSPIRR+ D++ H V + G S + E + + +IA
Sbjct: 554 GHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSETKYEDLCDHSSNMEQIAA 612
Query: 507 RLSNTSLRYWIIEFL 521
S++Y +EF+
Sbjct: 613 NAERASIKYKQVEFM 627
>gi|270292901|ref|ZP_06199112.1| ribonuclease R [Streptococcus sp. M143]
gi|270278880|gb|EFA24726.1| ribonuclease R [Streptococcus sp. M143]
Length = 779
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 TEKDMEGRLDLRGELTFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|194015352|ref|ZP_03053968.1| ribonuclease R [Bacillus pumilus ATCC 7061]
gi|194012756|gb|EDW22322.1| ribonuclease R [Bacillus pumilus ATCC 7061]
Length = 779
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 160/340 (47%), Gaps = 44/340 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + + ID +A +LDDA++ +L DG+ K+ +H+AD + Y+ S D
Sbjct: 242 EKDLEGRRDLRNETIVTIDGADAKDLDDAVTVQKLDDGKYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ +V+ +G + ++ + S
Sbjct: 302 QEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMVIDRNGKVVKHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEE---EAELKI-----LSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L EE + EL + + + A + R+++GA+D
Sbjct: 362 VIKTTERMTYTDVNKILVDQDEELIDKYELLVPMFQEMEKLAEILRDKRMERGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAAKDVVVRERSVAEKLIEEFMLVANETVAEHFHWLNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V + +++ M+ A
Sbjct: 478 PNPEKLQRFLEFVTTFGYIVKGTSTNIHPRALQSVLDAVRDQPEEVVIQTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 538 YD-PESIGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|239904967|ref|YP_002951705.1| ribonuclease [Desulfovibrio magneticus RS-1]
gi|239794830|dbj|BAH73819.1| putative ribonuclease [Desulfovibrio magneticus RS-1]
Length = 700
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 157/351 (44%), Gaps = 25/351 (7%)
Query: 195 AIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTAT 254
+ID ++DDA A DG I++ + +ADP + G D R +S++LP
Sbjct: 295 SIDSPTTRDIDDAFFAETRPDGTIRLVLALADPALDWDFGGPLDTAVAHRASSLYLPEGV 354
Query: 255 YPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATEL 314
M PE L + SLR G+V ++ + +G I +++ + ++ TY
Sbjct: 355 SHMLPECLGTDLYSLRAGDVRPSLVMEWDFSPEGEIVGFAMRKTFVRVAENTTYAVV--- 411
Query: 315 LHLNLEEEAELKILSEAAALRLQWR---------LQQGAIDTATLETRIKVAN-PEDPEP 364
EA L A L+L WR L++GA+ E I ++ P+D +
Sbjct: 412 -------EAALDRGDAAPHLQLGWRVASWLRAKRLERGAVIIERPEPEISLSGYPDDVK- 463
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I + V A LVSE+MIL A A Y + A+ +R Q + + +
Sbjct: 464 -IEMSVCPAYPKAQLLVSELMILGNAAAADYAVSHGAAMLFRTQ-DARLPPEVRGIHSDP 521
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P A+ ++ + P H L P Y TSP+RRY DL+ Q++A LR +P
Sbjct: 522 PAIQRAVREL--PPTLTEPDPRPHATLAAPAYAPVTSPLRRYADLINLAQLEALLRTGAP 579
Query: 485 PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALIL 535
+S G+LE +++ + R+ RYW + FL+R KER + +++
Sbjct: 580 RWSRGELEARLPLLSSRIEAVGRVQRFRPRYWKLAFLQRHCKERTFEGVVV 630
>gi|289523415|ref|ZP_06440269.1| ribonuclease R [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503107|gb|EFD24271.1| ribonuclease R [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 649
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 172/378 (45%), Gaps = 40/378 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL ID +A + DDALS +++G + V +H+AD ++Y+ P S D +A +R
Sbjct: 198 RKDLRKKVALTIDPSDAKDFDDALSIEEVEEGWL-VGVHIADVSEYVRPASQIDIEARQR 256
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
SV+L PM P +L+ + SL +G+ +TV +VL+ G + Y V S+I+
Sbjct: 257 SFSVYLVDRAIPMLPPRLSSDLCSLIEGKDRLCLTVEMVLNHRGELLRYKVIPSVIRVRK 316
Query: 305 MLTYESATELLH----LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
LTYE A E+L E + L+ LS A R ++G ++ E KV E
Sbjct: 317 RLTYEEAQEVLDGRNTFGEEIDGVLQRLSRVAKKLYSGRKKEGMVEFDFPEA--KVVLDE 374
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP----------- 409
+ + VE + R+V MIL IA Y +++ YR
Sbjct: 375 EGRAVDVRVVERIF--SYRIVEHFMILANSVIAEYVFNSDIQAIYRVHERPDREKLEQLR 432
Query: 410 --------------QSNIDVSAFAHLPEG-PVRSSAIVKIMRAAAIDFRKPV--RHGVLG 452
+SN ++ EG P + ++R+ + PV H L
Sbjct: 433 RILASMGIEIKRINRSNRTINRLLKRVEGLPFKRLVHTLVLRSLSRARYYPVCLGHFGLA 492
Query: 453 LPGYVQFTSPIRRYMDLLAHYQVKACLRGE---SPPFSAGQLEGMASIVNMQTRIARRLS 509
L Y+ FTSPIRRY DL+ H V ++ E P+S +L+ +AS ++ A L
Sbjct: 493 LKYYLHFTSPIRRYPDLVVHRIVHELIKEERSLKEPYSFEELKDIASYASIMEEKADELE 552
Query: 510 NTSLRYWIIEFLRRQPKE 527
TS++ I+E++ + E
Sbjct: 553 KTSVKMKIVEYMENKVGE 570
>gi|406946623|gb|EKD77766.1| hypothetical protein ACD_42C00189G0003 [uncultured bacterium]
Length = 746
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 179/410 (43%), Gaps = 61/410 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL +L ID ++A + DDA+ L +V+I +AD Y+ P S DK+A R
Sbjct: 292 RRDLRNLHFVTIDGEDAKDFDDAVYCEPLSKNHWRVWIAIADVAHYVTPHSALDKEAHSR 351
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV--SVVLHSDGSIAEYSVDNSIIKP 302
G SV+ P PM PEKL+ + SLR C+ +T+ + +++DG + +Y DN+II
Sbjct: 352 GNSVYFPARVIPMLPEKLSNDLCSLRPH--CDRLTMVCEMEINADGVVQKYQFDNAIIHS 409
Query: 303 TYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY + +L E E LK L L+ R +GAI+ T ET+I
Sbjct: 410 KARLTYTTVAAIL---AETEVADTVLTMHLKNLHHLFQTLLRQRELRGAIEFETTETQII 466
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR----GQPQS 411
I+ V + A R++ E+M++ E A Y ++ YR +P+
Sbjct: 467 FGQGGK----IDSIVPRLRNVAHRIIEELMLVANETTAKYIKKADIPALYRVHDFPEPEK 522
Query: 412 NIDVSAF--------------------------AHLPEGPVRSSAIVKIMRAA--AIDFR 443
++ F + P+ + + +++ +R A + D R
Sbjct: 523 LSNLRDFLKSFSLRLPGGDQPTPGDYAKLLERVSKRPDAHLIQTVMLRSLRQAIYSSDDR 582
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPP---FSAGQLEGMASIVNM 500
H L Y FTSPIRRY DLL H +K + P ++A + + +M
Sbjct: 583 G---HFGLSYETYCHFTSPIRRYPDLLVHRALKHIISKRKPSSFLYNAEHMTVVGEHCSM 639
Query: 501 QTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEV 550
R A R S + + ++++ + + + FI D T L VE+
Sbjct: 640 TERRADRASRDATDWLKCDYIKNKVGQ-----VFDGFIADVTGFGLFVEL 684
>gi|170288010|ref|YP_001738248.1| ribonuclease R [Thermotoga sp. RQ2]
gi|170175513|gb|ACB08565.1| ribonuclease R [Thermotoga sp. RQ2]
Length = 710
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 172/356 (48%), Gaps = 45/356 (12%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ RKDL + ID ++A + DDA+S +L +G + +H+AD + Y++ GS D++
Sbjct: 242 DLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLSNGNYLLGVHIADVSHYVKEGSALDQE 301
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A KRGTSV+L PM P +L+ SL +G+ ++V + + DG + Y V S+I
Sbjct: 302 AFKRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVI 361
Query: 301 KPTYMLTYESATELLH--LNLEEEAELKIL----SEAAALRLQWRLQQGAI-DTATLETR 353
K + YE E L +++E K L E A + + R ++GAI D + E
Sbjct: 362 KSKKRMIYERVNEFLEDPSSMKEYEPFKDLIYNAVELAEILREARRKRGAILDIESDE-- 419
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY------RG 407
+KV E+ + ++++ V + A +L+ E MI E +A F++ LP+
Sbjct: 420 VKVILDENGQ-VVDI-VPRKRGIAEKLIEEFMIRANETVAEI--FDHAGLPFMYRVHEEP 475
Query: 408 QPQSNIDVSAF-------AHLPEG----------------PVRSSAIVKIMRAAAIDFRK 444
P++ + + A+ P+ P+RSS ++R+
Sbjct: 476 DPETIFQLRNYLEAMGIRANFPQNIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYS 535
Query: 445 PVRHGVLGLP--GYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
V G GL Y FTSPIRRY DL+ H +K L ++ F+ Q+E + ++
Sbjct: 536 AVNIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLE-QNGYFTPEQIEKFSKVL 590
>gi|29840007|ref|NP_829113.1| VacB/Rnb family exoribonuclease [Chlamydophila caviae GPIC]
gi|29834354|gb|AAP04991.1| exoribonuclease, VacB/Rnb family [Chlamydophila caviae GPIC]
Length = 678
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 182/405 (44%), Gaps = 50/405 (12%)
Query: 169 KDISNFLQKAEDNLL-NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S+F QK + L +RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 190 EETSHFSQKHINQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYILGVHIADV 249
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 250 SHYVTPHSALDQEASKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKE 309
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW---RLQQGA 344
G +++Y V S+I+ Y +TY+ E++ N + K L A L ++ R ++G
Sbjct: 310 GHLSDYEVFRSVIRSKYRMTYDEVDEIVE-NKQPHPISKTLLAMAELSEKFADIREKRGC 368
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I + + N ++P +I E + + +L+ E M+ E IA + S + LP
Sbjct: 369 IRLVLPSFTMALDNLQEPVALI----ETRQTLSHKLIEEFMLKANEVIAYHISHQGVTLP 424
Query: 405 YRGQPQSNID-VSAFAHLPEG--------------------------PVRS---SAIVKI 434
+R N + + +F + +G P+ + S V+
Sbjct: 425 FRIHESPNDESLLSFQEMAKGMGFDIIMTPAQEPDYQYLLQESSAGHPLEAILHSQFVRS 484
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGM 494
M+ A+ +G L L Y FTSPIRRY+DL+ H + + E +LE +
Sbjct: 485 MKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLVVHRLLFHPMSIEE-----TRLEHI 538
Query: 495 ASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +FL+ QP E Y+ I+
Sbjct: 539 VRACSTQERIAAKAEFAFENLKKTRFLDKFLKEQP-ETIYKGFII 582
>gi|385840694|ref|YP_005864018.1| Ribonuclease R 1 [Lactobacillus salivarius CECT 5713]
gi|300214815|gb|ADJ79231.1| Ribonuclease R 1 [Lactobacillus salivarius CECT 5713]
Length = 799
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKIGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|148269352|ref|YP_001243812.1| ribonuclease R [Thermotoga petrophila RKU-1]
gi|281411951|ref|YP_003346030.1| ribonuclease R [Thermotoga naphthophila RKU-10]
gi|147734896|gb|ABQ46236.1| RNAse R [Thermotoga petrophila RKU-1]
gi|281373054|gb|ADA66616.1| ribonuclease R [Thermotoga naphthophila RKU-10]
Length = 710
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 172/356 (48%), Gaps = 45/356 (12%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ RKDL + ID ++A + DDA+S +L +G + +H+AD + Y++ GS D++
Sbjct: 242 DLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLSNGNYLLGVHIADVSHYVKEGSALDQE 301
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A KRGTSV+L PM P +L+ SL +G+ ++V + + DG + Y V S+I
Sbjct: 302 AFKRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVI 361
Query: 301 KPTYMLTYESATELLH--LNLEEEAELKIL----SEAAALRLQWRLQQGAI-DTATLETR 353
K + YE E L +++E K L E A + + R ++GAI D + E
Sbjct: 362 KSKKRMIYERVNEFLEDPSSMKEYEPFKDLIYNAVELAEILREARRKRGAILDIESDE-- 419
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY------RG 407
+KV E+ + ++++ V + A +L+ E MI E +A F++ LP+
Sbjct: 420 VKVILDENGQ-VVDI-VPRKRGIAEKLIEEFMIRANETVAEI--FDHAGLPFMYRVHEEP 475
Query: 408 QPQSNIDVSAF-------AHLPEG----------------PVRSSAIVKIMRAAAIDFRK 444
P++ + + A+ P+ P+RSS ++R+
Sbjct: 476 DPETIFQLRNYLEAMGIRANFPQNIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYS 535
Query: 445 PVRHGVLGLP--GYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
V G GL Y FTSPIRRY DL+ H +K L ++ F+ Q+E + ++
Sbjct: 536 AVNIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLE-QNGYFTPEQIEKFSKVL 590
>gi|393782655|ref|ZP_10370838.1| ribonuclease R [Bacteroides salyersiae CL02T12C01]
gi|392672882|gb|EIY66348.1| ribonuclease R [Bacteroides salyersiae CL02T12C01]
Length = 713
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 165/375 (44%), Gaps = 44/375 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L+D +V +H+AD T Y++ GS+ DK+A KR
Sbjct: 259 REDFRKVTTFTIDPKDAKDFDDALSIRKLKDNLWEVGVHIADVTHYVKEGSIIDKEAEKR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A +V + G + V +++I
Sbjct: 319 ATSVYLVDRTIPMLPERLCNFLCSLRPHEEKLAFSVIFDITEKGDVKNSRVVHTVIYSDR 378
Query: 305 MLTYESATELLHL-NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ N + + E+ +L A + R GAI+ E + ++ P
Sbjct: 379 RFTYEEAQQIIETKNGDFKDEVLMLDTIAKALREKRFAAGAINFDRYEVKFEIDEKGKP- 437
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQ---- 410
+++Y ++ D A +LV E M+L +A LPYR P+
Sbjct: 438 --VSVYFKESKD-ANKLVEEFMLLANRTVAEQIGRVPKGKKAKVLPYRIHDLPDPEKLDN 494
Query: 411 ----------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAIDFRKPV 446
+ D+S + HL E + + ++ M+ A +
Sbjct: 495 LNQFIARFGYKLRTSGTKTDISKSINHLLDDIQGKKEENLIETVSIRAMQKARYSTHN-I 553
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
H L Y FTSPIRR+ D++ H V L G S + E + + +IA
Sbjct: 554 GHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYLDG-GRSVSESKYEDLCDHSSNMEQIAA 612
Query: 507 RLSNTSLRYWIIEFL 521
S++Y +EF+
Sbjct: 613 NAERASIKYKQVEFM 627
>gi|419782789|ref|ZP_14308587.1| ribonuclease R [Streptococcus oralis SK610]
gi|383183002|gb|EIC75550.1| ribonuclease R [Streptococcus oralis SK610]
Length = 784
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 45/342 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKSLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + S +L YR
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEHFSKFDLPFIYRIH 476
Query: 407 -----GQPQSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F + + A+ IMRA + V
Sbjct: 477 EEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSMQQ 536
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 537 ARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|162447270|ref|YP_001620402.1| 3'-5' exoribonuclease [Acholeplasma laidlawii PG-8A]
gi|161985377|gb|ABX81026.1| 3'-5' exoribonuclease, RNase R/RNase II family [Acholeplasma
laidlawii PG-8A]
Length = 728
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 153/331 (46%), Gaps = 42/331 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+T V ID +A +LDDA+S L++G K+ +H+AD + +++ GS ++ A R
Sbjct: 220 RRDITDKLVVTIDGADAKDLDDAISLEYLENGNFKLGVHIADVSYFVKEGSYLNEAAYNR 279
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P L+ + SL E +T + L+ D + Y + SII+ +
Sbjct: 280 ATSVYLADRVIPMIPHGLSNDLCSLNPNEDKYTITCEMELNPDIEVVNYDIYASIIQSKH 339
Query: 305 MLTYESATELLHLNL-----EEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
LTY +L + E + L ++E A Q R ++GAID + E + +
Sbjct: 340 RLTYHDVNQLFKEHQSTGFKEVDKMLFTMNEIAQKLKQIRTKRGAIDFNSTELKFVLDVN 399
Query: 360 EDPEPIINLYVEDQ-ADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQPQSN---- 412
D L VE++ D A L+ MIL E ++ + FN+L YR +P S
Sbjct: 400 GDV-----LGVEERTTDEAEALIESFMILANETVSRHFFFNDLPGIYRVHEKPTSEKLDI 454
Query: 413 -----------IDVSA-------------FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+D SA A P + + +++ M+ AI KP+ H
Sbjct: 455 AFESSAKLGFRVDQSAKSSAQKLQRLTKKVAQTPYEYIINMILLRSMQ-KAIYSEKPIGH 513
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
L Y FTSPIRRY DLL H ++ +
Sbjct: 514 FGLASAYYSHFTSPIRRYPDLLLHRMIRDLM 544
>gi|335029875|ref|ZP_08523377.1| ribonuclease R [Streptococcus infantis SK1076]
gi|334268017|gb|EGL86467.1| ribonuclease R [Streptococcus infantis SK1076]
Length = 780
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R DL + ID +A +LDDA+ L++G ++ +H+AD + Y++ GS
Sbjct: 243 SEADLEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNFELGVHIADVSYYVKEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + YS+
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVRNYSI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK +Y +TY ++L + E+ E K ++++ + R+++GA++
Sbjct: 361 TQTVIKTSYRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHEILEDMRIKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDIVLRH----RGTAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|297566623|ref|YP_003685595.1| ribonuclease R [Meiothermus silvanus DSM 9946]
gi|296851072|gb|ADH64087.1| ribonuclease R [Meiothermus silvanus DSM 9946]
Length = 863
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 152/339 (44%), Gaps = 47/339 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R D L V+ ID +A + DDA+ RL+ R ++ +H+AD + Y+ GS DK
Sbjct: 253 EEIARRADFRSLNVFTIDGIDAKDFDDAIHVERLEGNRYRIGVHIADVSHYVREGSALDK 312
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A +RGTSV+LP PM PEKL+ SL G+ ++V V + G + +S +
Sbjct: 313 EAYERGTSVYLPGRVLPMLPEKLSNGVCSLVPGQDRLVLSVLVEITDGGRVLRHSFREGV 372
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW-------RLQQGAIDTATLET 352
I+ LTY + + E K L AL L+ R+ GA+D E
Sbjct: 373 IRSKARLTY-TQVQAFAEGKGMPDEFKWLEPDLALLLELTRKLKAKRVAAGALDFHFTEV 431
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ + + I+L + + D A L+ E+M+L +A Y S L YR +
Sbjct: 432 KVDIGEAGE----IHLIPQTEPD-ARSLIEELMLLANRIVAKYLSDKGLPALYRVH-EDP 485
Query: 413 IDVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAID 441
D+ A+A L PE P+ S+ +++ ++ A
Sbjct: 486 TDM-AYAKLAAQLSKLGYELPGMEPSPKAMQAILKQVEGKPEAPMVSTLLLRSLKLARYA 544
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ H L Y+ FTSPIRRY DL+ H +K +R
Sbjct: 545 HEN-LGHFGLAAEHYLHFTSPIRRYPDLIVHRVLKTLMR 582
>gi|62184878|ref|YP_219663.1| ribonuclease [Chlamydophila abortus S26/3]
gi|62147945|emb|CAH63692.1| putative ribonuclease [Chlamydophila abortus S26/3]
Length = 682
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 174/405 (42%), Gaps = 57/405 (14%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL L + ID A + DDA+S +
Sbjct: 188 VIEETHHFSQKHISQALR-------SRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNY 240
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 241 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 300
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 301 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 359
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R Q+G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 360 SDIREQRGCIRLVLPLFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 415
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 416 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 474
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 475 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFHPMSIEE- 532
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQP 525
+LE + + Q RIA + N ++ +FL+ QP
Sbjct: 533 ----TRLEHIVRACSTQERIAAKAEFAFENLKKNRFLHKFLKEQP 573
>gi|422826751|ref|ZP_16874930.1| ribonuclease R [Streptococcus sanguinis SK678]
gi|324994869|gb|EGC26782.1| ribonuclease R [Streptococcus sanguinis SK678]
Length = 782
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 155/338 (45%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + + ++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKNTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|53715849|ref|YP_101841.1| ribonuclease R [Bacteroides fragilis YCH46]
gi|60683768|ref|YP_213912.1| exoribonuclease [Bacteroides fragilis NCTC 9343]
gi|265764716|ref|ZP_06092991.1| ribonuclease R [Bacteroides sp. 2_1_16]
gi|336407528|ref|ZP_08588025.1| ribonuclease R [Bacteroides sp. 2_1_56FAA]
gi|375360672|ref|YP_005113444.1| putative exoribonuclease [Bacteroides fragilis 638R]
gi|383116347|ref|ZP_09937097.1| ribonuclease R [Bacteroides sp. 3_2_5]
gi|423248016|ref|ZP_17229032.1| ribonuclease R [Bacteroides fragilis CL03T00C08]
gi|423252967|ref|ZP_17233898.1| ribonuclease R [Bacteroides fragilis CL03T12C07]
gi|423259671|ref|ZP_17240594.1| ribonuclease R [Bacteroides fragilis CL07T00C01]
gi|423263354|ref|ZP_17242357.1| ribonuclease R [Bacteroides fragilis CL07T12C05]
gi|423270099|ref|ZP_17249071.1| ribonuclease R [Bacteroides fragilis CL05T00C42]
gi|423272445|ref|ZP_17251392.1| ribonuclease R [Bacteroides fragilis CL05T12C13]
gi|423282684|ref|ZP_17261569.1| ribonuclease R [Bacteroides fragilis HMW 615]
gi|52218714|dbj|BAD51307.1| ribonuclease R [Bacteroides fragilis YCH46]
gi|60495202|emb|CAH10023.1| putative exoribonuclease [Bacteroides fragilis NCTC 9343]
gi|251948396|gb|EES88678.1| ribonuclease R [Bacteroides sp. 3_2_5]
gi|263254100|gb|EEZ25534.1| ribonuclease R [Bacteroides sp. 2_1_16]
gi|301165353|emb|CBW24925.1| putative exoribonuclease [Bacteroides fragilis 638R]
gi|335947432|gb|EGN09223.1| ribonuclease R [Bacteroides sp. 2_1_56FAA]
gi|387775981|gb|EIK38084.1| ribonuclease R [Bacteroides fragilis CL07T00C01]
gi|392657494|gb|EIY51127.1| ribonuclease R [Bacteroides fragilis CL03T12C07]
gi|392660890|gb|EIY54488.1| ribonuclease R [Bacteroides fragilis CL03T00C08]
gi|392699644|gb|EIY92818.1| ribonuclease R [Bacteroides fragilis CL05T00C42]
gi|392707649|gb|EIZ00765.1| ribonuclease R [Bacteroides fragilis CL07T12C05]
gi|392708875|gb|EIZ01977.1| ribonuclease R [Bacteroides fragilis CL05T12C13]
gi|404582252|gb|EKA86947.1| ribonuclease R [Bacteroides fragilis HMW 615]
Length = 714
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 165/375 (44%), Gaps = 44/375 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS L+DG +V +H+AD T Y++ GS+ DK+A KR
Sbjct: 259 REDFRKVTTFTIDPKDAKDFDDALSIRPLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G + + + +++I+
Sbjct: 319 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSAIFDITEKGEVRDSRIVHTVIESDR 378
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ + + E+ +L A + R GAI+ E + ++ P
Sbjct: 379 RFTYEEAQQIIETKEGDFKDEILMLDTIAKALREKRFTAGAINFDRYEVKFEIDEKGKP- 437
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALPYR----GQPQ---- 410
I++Y ++ D A +LV E M+L +A LPYR P+
Sbjct: 438 --ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGKAPKGKKPKVLPYRIHDLPDPEKLDN 494
Query: 411 ----------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAIDFRKPV 446
+ DVS + HL E + + ++ M+ A +
Sbjct: 495 LAQFIARFGYRLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSTHN-I 553
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
H L Y FTSPIRR+ D++ H V + G S + E + + +IA
Sbjct: 554 GHYGLAFDYYTHFTSPIRRFPDMMVHRLVTRYMDG-GRSVSETKYEDLCDHSSNMEQIAA 612
Query: 507 RLSNTSLRYWIIEFL 521
S++Y +EF+
Sbjct: 613 NAERASIKYKQVEFM 627
>gi|304440569|ref|ZP_07400455.1| ribonuclease R [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304370945|gb|EFM24565.1| ribonuclease R [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 705
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 171/372 (45%), Gaps = 40/372 (10%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E L R DLT + +Y ID ++ + DDA+S ++ D ++ +H+AD ++Y++ S
Sbjct: 233 TEKQLEGRHDLTDMVIYTIDGADSKDFDDAISLEKVGDN-YRLGVHIADVSQYVKEDSYL 291
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KRG S +L YPM P++L+ SL +G V ++V + + G + E+ ++
Sbjct: 292 DKEAFKRGNSYYLQDKVYPMLPKELSNGICSLNEGVVRLTLSVFMEIDKKGKVVEHKIEE 351
Query: 298 SIIKPTYMLTYESATELL-----HLNLEEEAE-LKILSEAAALRLQWRLQQGAIDTATLE 351
S IK L Y++ ++ L H +LE + L + E A + ++ R +G+ID E
Sbjct: 352 SFIKSKRRLVYDNVSDYLEEGKKHPSLEGLYDSLDMAKELAEILMKKRYDRGSIDFDFKE 411
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
I E+ P I++ V+D+ +++ E MI E +A + L YR +
Sbjct: 412 PEI--ITDENGVP-IDILVKDRR-IGNKIIEEFMICANETVAEEYYWLELPFLYRIHEEP 467
Query: 412 N-IDV----SAFAHLPEG--------PVRSSAIVKIMRAAAIDF--------------RK 444
+ DV SA HL PV I+ ++ + +
Sbjct: 468 DEEDVERLNSAIRHLGLSINNFRELRPVEFRNIIDKVKGTSEELFVSTLLLRSLQKARYS 527
Query: 445 PVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQT 502
V GL Y FTSPIRRY DL H +KA L+G + ++ IV QT
Sbjct: 528 EVNDIHFGLASKYYSHFTSPIRRYADLFIHRIIKANLKGLLSRKKIEYYDELSHIVAEQT 587
Query: 503 RIARRLSNTSLR 514
R++ T R
Sbjct: 588 SKMERVAQTCER 599
>gi|417788632|ref|ZP_12436315.1| 3'-to-5' exoribonuclease RNase R [Lactobacillus salivarius NIAS840]
gi|334308809|gb|EGL99795.1| 3'-to-5' exoribonuclease RNase R [Lactobacillus salivarius NIAS840]
Length = 799
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|89898573|ref|YP_515683.1| ribonuclease R [Chlamydophila felis Fe/C-56]
gi|89331945|dbj|BAE81538.1| ribonuclease R [Chlamydophila felis Fe/C-56]
Length = 676
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 178/406 (43%), Gaps = 52/406 (12%)
Query: 169 KDISNFLQKA-EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ ++F QK L +RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 189 EETNHFSQKHIAQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDHNDNYILGVHIADV 248
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V +
Sbjct: 249 SHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAVSVFMTFTKS 308
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW---RLQQGA 344
G ++ Y + S+I+ Y +TY+ E++ N + K L A L ++ R ++G
Sbjct: 309 GHLSNYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPISKTLLAMAELSEKFADIREKRGC 367
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I + + N ++P +I E + + +L+ E M+ E IA + S +LP
Sbjct: 368 IRLILPSFTMALDNLQEPTALI----ETRQTLSHKLIEEFMLKANEVIAYHISHQGFSLP 423
Query: 405 YRGQPQSN---------------IDV----------------SAFAHLPEGPVRSSAIVK 433
+R N D+ S+ H P P+ S V+
Sbjct: 424 FRIHESPNDESLLSFQEMAKAMGFDIIMTPTQEPDYQYLLQESSSGH-PLEPILHSQFVR 482
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEG 493
M+ A+ +G L L Y FTSPIRRY+DL+ H + + E +LE
Sbjct: 483 SMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLVVHRLLFHPMSIEE-----TRLEH 536
Query: 494 MASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ + Q RIA + N ++ +FL+ QP E Y+A I+
Sbjct: 537 IVRACSSQERIAAKAEFAFENLKKTRFLNKFLQEQP-ETIYKAYII 581
>gi|418961655|ref|ZP_13513540.1| ribonuclease R [Lactobacillus salivarius SMXD51]
gi|380343750|gb|EIA32098.1| ribonuclease R [Lactobacillus salivarius SMXD51]
Length = 799
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|422857998|ref|ZP_16904648.1| ribonuclease R [Streptococcus sanguinis SK1057]
gi|327460969|gb|EGF07302.1| ribonuclease R [Streptococcus sanguinis SK1057]
Length = 782
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++IK + +TY +++ N E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTIFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASTFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|423718679|ref|ZP_17692861.1| ribonuclease R [Geobacillus thermoglucosidans TNO-09.020]
gi|383368281|gb|EID45554.1| ribonuclease R [Geobacillus thermoglucosidans TNO-09.020]
Length = 761
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 159/342 (46%), Gaps = 46/342 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R+DL + ID ++A +LDDA++ +L +G K+ +H+AD + Y+E GS
Sbjct: 240 SEKDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLANGHYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTISCEMEINERGEVVSHEIFQ 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK---------ILSEAAALRLQWRLQQGAIDTA 348
S+I+ T +TY ++L ++ +EE K +++E A + R+++GAID
Sbjct: 360 SVIRTTERMTYSDVNKIL-VDKDEELRKKYAPLVPMFELMAELAEILRNKRMKRGAIDFD 418
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V P + V + A RL+ E M+ E +A + + N+ YR
Sbjct: 419 FKEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVH 474
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
+ ++ F ++ PE + S+ +++ M+
Sbjct: 475 EDPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQEILEAVRGEPEEMLISTVMLRSMKQ 534
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A D +G L Y FTSPIRRY DL+ H ++ L
Sbjct: 535 ARYDAESLGHYG-LSTDFYTHFTSPIRRYPDLIVHRLIRTYL 575
>gi|336233951|ref|YP_004586567.1| ribonuclease R [Geobacillus thermoglucosidasius C56-YS93]
gi|335360806|gb|AEH46486.1| ribonuclease R [Geobacillus thermoglucosidasius C56-YS93]
Length = 761
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 159/342 (46%), Gaps = 46/342 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R+DL + ID ++A +LDDA++ +L +G K+ +H+AD + Y+E GS
Sbjct: 240 SEKDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLANGHYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTISCEMEINERGEVVSHEIFQ 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK---------ILSEAAALRLQWRLQQGAIDTA 348
S+I+ T +TY ++L ++ +EE K +++E A + R+++GAID
Sbjct: 360 SVIRTTERMTYSDVNKIL-VDKDEELRKKYAPLVPMFELMAELAEILRNKRMKRGAIDFD 418
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V P + V + A RL+ E M+ E +A + + N+ YR
Sbjct: 419 FKEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVH 474
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
+ ++ F ++ PE + S+ +++ M+
Sbjct: 475 EDPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQEILEAVRGEPEEMLISTVMLRSMKQ 534
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A D +G L Y FTSPIRRY DL+ H ++ L
Sbjct: 535 ARYDAESLGHYG-LSTDFYTHFTSPIRRYPDLIVHRLIRTYL 575
>gi|312109557|ref|YP_003987873.1| ribonuclease R [Geobacillus sp. Y4.1MC1]
gi|311214658|gb|ADP73262.1| ribonuclease R [Geobacillus sp. Y4.1MC1]
Length = 761
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 159/342 (46%), Gaps = 46/342 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R+DL + ID ++A +LDDA++ +L +G K+ +H+AD + Y+E GS
Sbjct: 240 SEKDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLANGHYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTISCEMEINERGEVVSHEIFQ 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK---------ILSEAAALRLQWRLQQGAIDTA 348
S+I+ T +TY ++L ++ +EE K +++E A + R+++GAID
Sbjct: 360 SVIRTTERMTYSDVNKIL-VDKDEELRKKYAPLVPMFELMAELAEILRNKRMKRGAIDFD 418
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V P + V + A RL+ E M+ E +A + + N+ YR
Sbjct: 419 FKEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVH 474
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
+ ++ F ++ PE + S+ +++ M+
Sbjct: 475 EDPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQEILEAVRGEPEEMLISTVMLRSMKQ 534
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A D +G L Y FTSPIRRY DL+ H ++ L
Sbjct: 535 ARYDAESLGHYG-LSTDFYTHFTSPIRRYPDLIVHRLIRTYL 575
>gi|227891154|ref|ZP_04008959.1| ribonuclease R1 [Lactobacillus salivarius ATCC 11741]
gi|227867028|gb|EEJ74449.1| ribonuclease R1 [Lactobacillus salivarius ATCC 11741]
Length = 799
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|338210808|ref|YP_004654857.1| ribonuclease R [Runella slithyformis DSM 19594]
gi|336304623|gb|AEI47725.1| ribonuclease R [Runella slithyformis DSM 19594]
Length = 786
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 176/405 (43%), Gaps = 61/405 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ + + ID +A + DDALS L +G ++ IH+AD T Y+ PG+ +++A R
Sbjct: 279 RRDMRDITTFTIDPADAKDFDDALSVRFLDNGNYEIGIHIADVTHYVRPGTALEQEAYAR 338
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PEKL+ SLR E +V V + D I ++I
Sbjct: 339 ATSVYLVDRTVPMLPEKLSNNLCSLRPNEDKLTFSVVVEMTPDAKIKHEWFGRTVIHSDK 398
Query: 305 MLTYESATELLHLN------LEEEA------------ELKILSEAAALRLQWRLQQGAID 346
+YE A E+L + +EE EL +L+ A R +GA++
Sbjct: 399 RFSYEEAQEILEMQAATDKAAKEEGFVDLSAPLPYAKELTLLNTLALQLRAERFAKGAVN 458
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSFNNLALP 404
T+E + ++ P + +Y + + D A +L+ E M+L + + + + A P
Sbjct: 459 FETVEVKFRLDEAGKP---LGIYTKVRKD-AHKLIEEFMLLANKRVPEFIQRQSKDKAHP 514
Query: 405 ----YRGQPQSNID----VSAFA--------------------HL-------PEGPVRSS 429
YR + +++ +AFA HL PE
Sbjct: 515 NTMVYRIHEEPDMEKLRVFAAFAGRLGYKLKLENEKVAAQSLNHLMEELEGKPEQNALEQ 574
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAG 489
++ M A A + V H L Y FTSPIRRY D++AH ++ L G+ P
Sbjct: 575 LAIRTM-AKARYSTEDVGHFGLAFRRYSHFTSPIRRYPDMMAHRLLQHYLDGKPSPERV- 632
Query: 490 QLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
+ E + + ++A S++Y +EF+ +R + +I
Sbjct: 633 EYEPACKHSSSREQMAANAERASIKYKQVEFMASMEPDRVWNGII 677
>gi|422865059|ref|ZP_16911684.1| ribonuclease R [Streptococcus sanguinis SK1058]
gi|327490243|gb|EGF22031.1| ribonuclease R [Streptococcus sanguinis SK1058]
Length = 782
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKEIVPSIDSMVQLHEILEIMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S ++ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQSLQDIMEAVKDQPYEEVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|148244964|ref|YP_001219658.1| ribonuclease II family protein [Candidatus Vesicomyosocius okutanii
HA]
gi|146326791|dbj|BAF61934.1| ribonuclease II family protein [Candidatus Vesicomyosocius okutanii
HA]
Length = 601
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 154/308 (50%), Gaps = 34/308 (11%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
++R DLTHL YAID ++++ DDA+S DG K++IH+AD + GS D A
Sbjct: 218 VDRVDLTHLSSYAIDNFDSNDADDAISV----DGD-KIWIHIADVSLIATAGSELDSYAQ 272
Query: 243 KRGTSVFLPTATYPMFP---EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
KR ++++LP M P K+ G++ E +A+++ L G I V SI
Sbjct: 273 KRASNLYLPEQIIHMLPISVTKMCALGLT----ETSHALSIGFTLEL-GEINNVEVVRSI 327
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IK T ++Y++A +L N E ++L+ +++A Q+R + GAI I+
Sbjct: 328 IKVT-NISYDNADGMLVSN-EYLSKLQSITKAHK---QYRYKNGAISLNLPNVDIRFRQG 382
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-----GQPQSNID 414
+ L + + + LV+EMM++ G +A + NN+ +PY G Q +D
Sbjct: 383 Q------VLITQQRLSKSRELVAEMMVMAGRVVAQFAVDNNIVMPYTIQDKGGFSQEILD 436
Query: 415 VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ 474
L E S K + +A K + H LG+ Y++ TSP+RRY+DL AH Q
Sbjct: 437 NQDTLSLSE----SFKATKFFKRSATSI-KNLPHFGLGVKAYLRITSPLRRYLDLFAHQQ 491
Query: 475 VKACLRGE 482
+ ++GE
Sbjct: 492 LSRFIKGE 499
>gi|90962131|ref|YP_536047.1| ribonuclease R 1 [Lactobacillus salivarius UCC118]
gi|90821325|gb|ABD99964.1| Ribonuclease R 1 [Lactobacillus salivarius UCC118]
Length = 799
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|386855232|ref|YP_006259409.1| Ribonuclease II, VacB-like protein [Deinococcus gobiensis I-0]
gi|379998761|gb|AFD23951.1| Ribonuclease II, VacB-like protein [Deinococcus gobiensis I-0]
Length = 433
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 167/358 (46%), Gaps = 31/358 (8%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL+ +AID + + DDA+ L+ G ++++HVAD + P S D +A
Sbjct: 53 DRLDLTHLEAFAIDDEGNRDPDDAVCTETLEGGLTRLWVHVADVAALVPPDSPLDLEARS 112
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T M P+ L +E L A+++S+ L ++G+ V + ++ T
Sbjct: 113 RGATLYLPDQTIGMLPDAL-VEQAGLGLAPTSPALSISLDLDAEGNAEAVDVVLTTVRVT 171
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A L + L+E A R +GA+ E R+K
Sbjct: 172 R-LTYGEAQRRLEGG---DPAFVALAELARASQALREAEGALTIDLPEVRVKADE----- 222
Query: 364 PIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAH 420
V P MR +V E M L G A + N + LP+ Q P++ +
Sbjct: 223 --AGAQVTPLPKPPMRFVVQECMTLAGWGAAIFADDNGIPLPFATQDPPRTTV------- 273
Query: 421 LPEGPVRSSAIVKIMRAAAIDFR-KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
G + + + F+ P H +GL YVQ TSP+RRY+DL+ H Q++A L
Sbjct: 274 --RGDGLGAQWARRRTLSRTRFQPSPGPHSGMGLDVYVQATSPMRRYLDLVVHQQLRAFL 331
Query: 480 RGESPPFSAGQLEGMA-SIVNMQ-TRIARRLSNTSLRYWIIEFLRRQPKERQYRALIL 535
G P +A +++N TR A RLS R+ + F+ QP ER++ A+++
Sbjct: 332 TGGEPVGGKVLASHIAQAVLNADGTRQAERLSR---RHHTLRFVAAQP-EREWEAVVV 385
>gi|423070304|ref|ZP_17059080.1| ribonuclease R [Streptococcus intermedius F0413]
gi|355366625|gb|EHG14343.1| ribonuclease R [Streptococcus intermedius F0413]
Length = 779
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 158/342 (46%), Gaps = 45/342 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R DL + + ID +A +LDDA+ +L +G ++ +H+AD + Y++ GS
Sbjct: 242 SKKDFEGRLDLRNEITFTIDGADAKDLDDAVHIKKLSNGHFELGVHIADVSYYVQEGSEL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + +++V
Sbjct: 302 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDQKGRVVKHTV 359
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKI-------LSEAAALRLQWRLQQGAIDTA 348
++IK T+ +TY +++ + E+ K ++E A+ R ++GA++
Sbjct: 360 TQTVIKTTFRMTYSDVNDIITGDKEKRTAFKTIVPSIEQMTELHAILETMRFKRGALNFD 419
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P II Q A R++ M++ E +A + + NL YR
Sbjct: 420 TKEAKILVNKTGRPVDIILR----QRGVAERMIESFMLVANETVAEHFARLNLPFLYRIH 475
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S SA+ IM+A + V
Sbjct: 476 EEPKAEKVQKFIDYASTFGVRVYGTANSISQSALQDIMKAVHGQPYEEVLSMMLLRSMQQ 535
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
+G GL Y FTSPIRRY DLL H V+ R
Sbjct: 536 ARYSEHNYGHYGLAAGFYTHFTSPIRRYPDLLVHRMVRDYGR 577
>gi|313216487|emb|CBY37789.1| unnamed protein product [Oikopleura dioica]
Length = 907
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 111/442 (25%), Positives = 199/442 (45%), Gaps = 60/442 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ L R DL + ++D ++DDAL +L +G +V +H+AD + +I+PG+
Sbjct: 426 TEEELAKRVDLREYDIASVDPPGCTDIDDALHCKKLPNGNYEVGVHIADVSHFIKPGTAL 485
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L M P L+ SLR GE A + L + I
Sbjct: 486 DEEAAQRGTSVYLADNRIDMVPILLSSNLCSLRGGEERLAFSTIWELDDNAQIVSVKFHK 545
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSE--------AAALRLQWRLQQGAIDTAT 349
S+IK TYE A + ++++++ L+E A L+ Q RL+ GA+ A+
Sbjct: 546 SVIKSKSAFTYEEA----QIRIDDKSKTDSLTESLRGLNYLAKKLKAQ-RLEDGALTLAS 600
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSFNNLALPYR- 406
+E R + + E +P I+LY ++ + +V E M+L ++A + F A+ R
Sbjct: 601 VEVRFHL-DSETADP-IDLYTKELKE-TNSMVEEFMLLANCSVAEHIRTEFPQSAVLRRH 657
Query: 407 -GQPQSNIDVSAFA------HL-----------------PEGPVRSSAIVKIMRAAAI-- 440
P SN D A HL P P+ ++ ++++M ++
Sbjct: 658 PKPPVSNFDPLVRAAKAKDFHLNVNSSRELADSLNLAVDPSDPMVNT-VLRVMSTRSMMQ 716
Query: 441 ------DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPP---FSAGQL 491
F H L P Y FTSPIRRY D++ H + A + ++ +
Sbjct: 717 AVYFCTGFESDCWHYGLAAPIYTHFTSPIRRYADIMVHRALAASIGADTTTPDILDKNHI 776
Query: 492 EGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVG 551
+ +N + R+A++ S+ + R+Q R A +++ +K +L+ + G
Sbjct: 777 NNVCKNINFRNRMAQQAQRASIALHTQLYFRKQ-GARMEEAYVMQ-VKQNAIGVLIPQFG 834
Query: 552 LQAAAWVSVGAQIGDEVEVKVE 573
++ +++ +I E E+ E
Sbjct: 835 MEGTIFLN---EIEKEAELDEE 853
>gi|339499569|ref|YP_004697604.1| ribonuclease II [Spirochaeta caldaria DSM 7334]
gi|338833918|gb|AEJ19096.1| ribonuclease II [Spirochaeta caldaria DSM 7334]
Length = 617
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 159/341 (46%), Gaps = 40/341 (11%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT L +AID + + DDA+ DG +Y+HVADP + +D +A
Sbjct: 240 ERIDLTGLPAFAIDNPWSTDPDDAVYI----DGST-LYVHVADPAASVLSDCEADLEARS 294
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++++LP M E+ ++ +L GE A+T + L DG + S+++ T
Sbjct: 295 RGSTLYLPEGALRMLHEE-SLTHFALGLGETSPALTFKITLAEDGRPEGIDIFRSLVRVT 353
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY+ A + EE LK L A + R GA+ E + VA+
Sbjct: 354 -RLTYDEADRRI-----EEEPLKALFAFAEKNVSRRQAAGAVTIEFPEVHLHVAD----- 402
Query: 364 PIINLYVEDQADPAMR---LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
+E PA R +V E M++ GEA A + N + P+ Q ++
Sbjct: 403 ----RTIEFTPIPAYRSAEMVRECMLIAGEATALWAMRNRIPFPFIAQELGDLPNEV--- 455
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
LP G S + + MR + +P H LGLP Y Q TSP+RRY DLLAH Q++ LR
Sbjct: 456 LP-GLAGSYQLRRCMRPRRLS-AQPGDHAGLGLPVYTQVTSPLRRYTDLLAHQQIRRYLR 513
Query: 481 GES--------PPFSAGQLEGMASIVNMQTRIARRLSNTSL 513
GE+ +AG+ A++ N+Q A +L T++
Sbjct: 514 GENLLSIDEILERVAAGE---AAALTNIQAERASKLHWTAV 551
>gi|345872416|ref|ZP_08824351.1| ribonuclease II [Thiorhodococcus drewsii AZ1]
gi|343918964|gb|EGV29721.1| ribonuclease II [Thiorhodococcus drewsii AZ1]
Length = 608
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 174/376 (46%), Gaps = 39/376 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL YAID + + DDALS L+ R+ ++HVAD +E S +++A
Sbjct: 232 ERLDLTHLPAYAIDDEGNQDPDDALS---LEGDRL--WVHVADVAALVEGDSDLEREARA 286
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP M P + E + L EV A++ + G + + V S ++
Sbjct: 287 RGANLYLPEGVVNMLPAAI-TERLGLGLHEVSPALSFGFLCDEQGELRDLQVVASWVR-V 344
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQ-QGAIDTATLETRIKVANPEDP 362
TYE L+ AE+ ++E R Q R Q GA A E ++V
Sbjct: 345 ERCTYEGVE--TQLDQSPFAEMLAVTE----RFQSRRQANGASSLALPEVSVRV------ 392
Query: 363 EPIINLYVEDQADPAMR---LVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSA 417
++ V + P +R LV+ M++ GEA A + + +A+P+ Q P S +
Sbjct: 393 ---LDGQVTIRPLPRLRSRELVTNAMLMAGEAAARFCAEREIAIPFATQVPPDSGAEAED 449
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
A + K R A P H LGLP Y + TSP+RRY DLL H Q++A
Sbjct: 450 LASM----FARRRCFKPTRLAMT----PEPHSGLGLPIYTRATSPLRRYSDLLVHQQIRA 501
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
L G + P A + + + +++ RR S ++W + +LR + ++
Sbjct: 502 SLAGRA-PLDAESVFARVAEADAASKVVRRSERLSNQHWKLVYLRDHSGWKGEGVVV--G 558
Query: 538 IKDRTAALLLVEVGLQ 553
++DR A +L+ E+ L+
Sbjct: 559 LEDRKAVVLVPEIALE 574
>gi|429204716|ref|ZP_19195999.1| ribonuclease R 1 [Lactobacillus saerimneri 30a]
gi|428146939|gb|EKW99172.1| ribonuclease R 1 [Lactobacillus saerimneri 30a]
Length = 797
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 166/348 (47%), Gaps = 56/348 (16%)
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
KDI + + AE R+DLT K+ ID E+ +LDDA++ +L +G + +H+AD +
Sbjct: 246 KDIPDEVTPAEKE--GRRDLTDQKLVTIDSIESKDLDDAVNVWQLPNGNYHLGVHIADVS 303
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
Y+ PG+ D++A +RGTSV+L PM P KL+ SL A+T + + G
Sbjct: 304 HYVTPGTPLDREAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEITPQG 363
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELK--------ILSEAAALR---LQ 337
+ + + S+IK T +TY + ++L ++A+LK + + AL L+
Sbjct: 364 EVVAHEIFPSVIKSTERMTYVAINKILE---SDDAKLKERYADLVPMFQDMKALHKILLK 420
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS 397
R ++GAI+ E +I V P +++ + ++ + R+V M+ E +A +
Sbjct: 421 MRKKRGAIEFEDTEAKIIVDEQGHP---VDIQLRERG-TSERMVESFMLAANETVAKH-- 474
Query: 398 FNNLALPY----RGQPQS-------------NIDVSA----------------FAHLPEG 424
FN+L +P+ +P+ I+V A PE
Sbjct: 475 FNDLHVPFLYRIHEKPKDEKIKSFYEVLASFGIEVHGKIADLEPKVLQQILKKVAGKPEE 534
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S+ +++ M+ A +P+ H L Y FTSPIRRY DL+ H
Sbjct: 535 PMISTLMLRSMQQAKYS-DQPLGHFGLAAVDYTHFTSPIRRYPDLMVH 581
>gi|262403841|ref|ZP_06080399.1| exoribonuclease II [Vibrio sp. RC586]
gi|262350345|gb|EEY99480.1| exoribonuclease II [Vibrio sp. RC586]
Length = 674
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/420 (27%), Positives = 184/420 (43%), Gaps = 55/420 (13%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
QKGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 QKGLNEADFQEGDWVVANLVRHPLKGDDGFFAQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTISK 294
Query: 287 DGSIAE----YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAAL 334
DG I + +S + IK L Y+ ++ L E+ + ++ L +
Sbjct: 295 DGVIGDDIRFFSAN---IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQA 351
Query: 335 RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG-- 389
R WR + + R +++ D ++ ++ D A RLV E MI +C
Sbjct: 352 RANWRENHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGK 407
Query: 390 --EAIATYGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEG 424
+A G FN A + G P ++ + V FA L E
Sbjct: 408 TLQATFGLGVFNTHAGFKAEKMADVVELMAAHGAPNADAETLATVEGFAALRRWLATQET 467
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 468 SYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|226357328|ref|YP_002787068.1| ribonuclease [Deinococcus deserti VCD115]
gi|226319318|gb|ACO47314.1| putative ribonuclease [Deinococcus deserti VCD115]
Length = 462
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/398 (28%), Positives = 182/398 (45%), Gaps = 36/398 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL+ YAID + + DDA+ L G ++++HVAD + P S D +A
Sbjct: 81 KRLDLTHLEAYAIDDEGNRDPDDAVGIEMLDGGLTRLWVHVADVAALVPPDSALDLEARS 140
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T M P++L +E L A+++++ L DG+ V + ++
Sbjct: 141 RGATLYLPDQTIGMLPDEL-VEKTGLGLHPTTPALSIALDLDHDGNADAVDVHLTTVR-V 198
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAA-ALRLQWRLQQGAIDTATLETRIKVANPEDP 362
LTY A L E L L+ A+ AL R +GA+ E R+K +
Sbjct: 199 ERLTYTQAQGRLEAGQEPFVTLLRLARASRAL----REAEGALSIDLPEVRVKADD---- 250
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
V P MR +V E M L G A + N + LP+ Q +V L
Sbjct: 251 ---QGAAVSPLPKPEMRFVVQECMTLAGWGAAIFADDNEVPLPFATQDYPTREVHGDT-L 306
Query: 422 PEGPVRSSAIVKIMRAAAIDFRK-PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
P R + + F+ P H +GL Y Q TSP+RRY+DL+ H Q++A L
Sbjct: 307 PAQWARRKTLARTR------FQPVPGPHHGMGLDLYAQVTSPMRRYLDLVVHQQLRAFLT 360
Query: 481 GESPPFSAGQLE----GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
G P G++ AS+ TR A RLS ++ + F+ QP +R++ +++
Sbjct: 361 GGEP--MGGKVMAAHIAQASLNADATRQAERLSR---KHHTLRFIASQP-DREWTGVVVD 414
Query: 537 FIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEE 574
+ A LL+ E+ +S A G E+ +++ +
Sbjct: 415 R-RGPQATLLIPELAFDLP--LSTPAAPGTELRLRLTD 449
>gi|299821975|ref|ZP_07053863.1| ribonuclease R [Listeria grayi DSM 20601]
gi|299817640|gb|EFI84876.1| ribonuclease R [Listeria grayi DSM 20601]
Length = 783
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 169/380 (44%), Gaps = 60/380 (15%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ AE + NR+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ G
Sbjct: 241 LENAE--IGNRRDLRDQIIITIDGADAKDLDDAVTVTKLENGNWKLGVHIADVSHYVTEG 298
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A RGTSV+L PM P KL+ SL ++ + + G++ +
Sbjct: 299 SEIDKEAADRGTSVYLVDRVIPMLPHKLSNGICSLNPHVDRFTLSCEMEIDETGTVVNHE 358
Query: 295 VDNSIIKPTYMLTYESATELLHLN--------------LEEEAELKILSEAAALRLQWRL 340
+ S+IK T +TY E+L + LEE +L A LR Q R
Sbjct: 359 IFESVIKTTERMTYTDVNEILTTDNLELRDRYAVIVPMLEEMGKL-----AETLR-QKRE 412
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
++GAID E R+ V P+ + V + A L+ E M+ E +A + + +
Sbjct: 413 KRGAIDFDFKEARVLVDEKGQPQEV----VMRERSVAEHLIEEFMLAANETVAEHFHWMD 468
Query: 401 LALPYRGQPQSNID--------VSAFAHL-----------------------PEGPVRSS 429
+ YR D ++ F + PE V S+
Sbjct: 469 VPFIYRIHENPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLDEVRGKPEEMVVST 528
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV-KACLRGE-SPPFS 487
+++ M+ A D V H L Y FTSPIRRY DL+ H + K + G+ S
Sbjct: 529 IMLRSMQQAKYD-TASVGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRKYLIEGDVSDATI 587
Query: 488 AGQLEGMASIVNMQTRIARR 507
A + E + I + +++ RR
Sbjct: 588 AKEAEQLPEIADHSSKMERR 607
>gi|410667074|ref|YP_006919445.1| ribonuclease R [Thermacetogenium phaeum DSM 12270]
gi|409104821|gb|AFV10946.1| ribonuclease R [Thermacetogenium phaeum DSM 12270]
Length = 725
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 170/358 (47%), Gaps = 44/358 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL L + ID ++A +LDDA+S RL D ++ +H+AD + Y++ S DK+A +
Sbjct: 257 GRWDLRELPMVTIDGEDAKDLDDAVSLERLPDNNYRLGVHIADVSYYVKENSELDKEAFR 316
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P +L+ SL GE A++V + ++++G++ Y + S+I+
Sbjct: 317 RGTSVYLVDRVIPMLPARLSNGICSLNAGEDRLAISVFMEINAEGNVVRYEIGPSVIRVD 376
Query: 304 YMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+TY + +L ++ E + + + E + + R +GA+D E+ K
Sbjct: 377 ERMTYTNVRRILEEDVPELYQRYSSFVKTFQEMKELCLILRRRRRLRGALDFDFPES--K 434
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
V E+ P+ L +E A +++ E M++ E +A + + + L YR + +
Sbjct: 435 VTLDEEGRPVDVLLMEQSI--ANQIIEEFMLIANETVARHLTKMEVPLLYRVHEEPKAEK 492
Query: 415 ---VSAFAH--------------------------LPEGPVRSSAIVKIMRAAAIDFRKP 445
++ F H PE V + +++ ++ A D KP
Sbjct: 493 LNALNEFLHGFGFHIPSANGVHPRFFQEILHKVEDRPERLVVQTVMLRSLQHARYD-PKP 551
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL-RGESPPFSAGQLEGMASIVNMQT 502
+ H L + Y FTSPIRRY DL+ H ++ L G+ P +LE M + QT
Sbjct: 552 LGHFGLAVRYYTHFTSPIRRYPDLIVHRVLREVLAHGKIPAKRREKLEQMMPVYAEQT 609
>gi|399910142|ref|ZP_10778456.1| exoribonuclease II [Halomonas sp. KM-1]
Length = 657
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 178/392 (45%), Gaps = 56/392 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT + ID ++ ++DDAL +G ++ + +ADPT Y+E G +D
Sbjct: 198 DEGLEREDLTAEPFFTIDSEKTRDMDDALRIEPRDEGGWRLTVAIADPTAYVEEGHAADL 257
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A R +V+LP M PE+LA + SLR+GE + ++ + +DGS+ +Y +
Sbjct: 258 EARTRAFTVYLPGQNVTMLPEQLADDLCSLREGEERPVLACTLEVEADGSLGDYRFFAAR 317
Query: 300 IKPTYMLTYESATELLHLNLE----EE--AELKILSEAAALRLQWRLQQGAIDTATLETR 353
++ L Y+ ++ L E EE +L+ L + R WR + + + R
Sbjct: 318 VRSRAKLVYDRISDWLEGQGEWAPAEEIAGQLQALRDMTEARSAWRTEHALV----FKDR 373
Query: 354 IKVANPEDPEP-IINLYVEDQADPAMRLVSEMMI----LCGEAIAT---YGSFN------ 399
DP ++++ +E Q A R++ E MI C +A +G FN
Sbjct: 374 PDYVFDLDPAGNVLDVRIE-QRRIANRMIEESMIAANACCAHFLAEHIGHGIFNVHRAFD 432
Query: 400 ----NLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRA---AAIDFR--------- 443
A + Q +++ A + LP R + + + + A +D R
Sbjct: 433 PEKAQAAHEFLTAQQIEVELEALSELP----RYKELKRALESRDDAWLDARLRRFQGFTS 488
Query: 444 ---KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
+P H LGL Y +TSPIR+Y D++ H +K L+GE P A Q ++
Sbjct: 489 MSARPGPHFGLGLNAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEATQ-----ALTEQ 543
Query: 501 QT--RIARRLSNTSLRYWI-IEFLRRQPKERQ 529
T R R++ ++ W+ + +L KE+Q
Sbjct: 544 LTERRKLNRMAERDVKDWLYVRYLTPAAKEQQ 575
>gi|419778992|ref|ZP_14304873.1| ribonuclease R [Streptococcus oralis SK10]
gi|383186756|gb|EIC79221.1| ribonuclease R [Streptococcus oralis SK10]
Length = 784
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|145219389|ref|YP_001130098.1| RNAse R [Chlorobium phaeovibrioides DSM 265]
gi|145205553|gb|ABP36596.1| RNAse R [Chlorobium phaeovibrioides DSM 265]
Length = 794
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 178/397 (44%), Gaps = 57/397 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+ +L R D+ ++ ID +A + DDALS L DG ++ +H+AD + Y+ S
Sbjct: 318 TDKDLKERLDIRDKVLFTIDPVDAKDFDDALSVESLGDGNWRIGVHIADVSHYVPEDSAL 377
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A+KR TSV+L PM P +L+ + SL G A +V ++ G +++
Sbjct: 378 DKEALKRSTSVYLVDRVIPMLPSRLSEDICSLNPGVDRMAFSVFFTMNEKGKVSKQEFHK 437
Query: 298 SIIKPTYMLTYESATELLHLNLEEE-AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE ++L+ + EL++L + + L + R + G +D T E R ++
Sbjct: 438 TVIHSKRRFTYEDVQDILNNGKGDYLMELQLLEKISVLLREERFRHGGLDFETEEVRFRL 497
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------GSFNNLALPYR--G 407
+ +P ++ + + + RL+ E M+L +A + G + YR G
Sbjct: 498 GSKGEPLEVM----KKERLGSHRLIEEFMLLANRKVAEHLTKTFKDGKKEPQPVIYRVHG 553
Query: 408 QPQSNIDVSAFAHL-------------PEGPVRSSA----IVKIMRAAAIDF-------- 442
PQ V+ A+ +GP+ S+ +++ +R + ++F
Sbjct: 554 SPQQE-RVTILANFVKKMGYELKLNKGKDGPIVSAKALRELLQKVRGSNVEFLVNELVLR 612
Query: 443 --RKPVR------HGVLGLPGYVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAG 489
K V H LG Y FTSPIRRY DL+ H Y+ R + P
Sbjct: 613 CMSKAVYTGENDGHYGLGFDHYTHFTSPIRRYPDLIVHRMLFEYEAFRKKRRKITPARIA 672
Query: 490 QL----EGMASIVNMQTRIARRLSNTSLRYWIIEFLR 522
+L E + I N + +IA S++ +E+++
Sbjct: 673 ELTQKIETVCRISNEREKIAVEAERESIKLKQVEYMQ 709
>gi|417809990|ref|ZP_12456671.1| ribonuclease R1 [Lactobacillus salivarius GJ-24]
gi|335350914|gb|EGM52410.1| ribonuclease R1 [Lactobacillus salivarius GJ-24]
Length = 799
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 157/336 (46%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTEERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 RGQPQSNIDVSAFAHL-----------------------------PEGPVRSSAIVKIMR 436
P + F L PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVVGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|329942561|ref|ZP_08291371.1| vacB and RNase II 3'-5' exoribonucleases family protein
[Chlamydophila psittaci Cal10]
gi|392376445|ref|YP_004064223.1| putative ribonuclease [Chlamydophila psittaci RD1]
gi|313847788|emb|CBY16778.1| putative ribonuclease [Chlamydophila psittaci RD1]
gi|328815471|gb|EGF85459.1| vacB and RNase II 3'-5' exoribonucleases family protein
[Chlamydophila psittaci Cal10]
Length = 682
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 180/415 (43%), Gaps = 58/415 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 188 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 240
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 241 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 300
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 301 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 359
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 360 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 415
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 416 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 474
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 475 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 532
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+LE + + Q RIA + ++ +FL+ QP + Y+A I+
Sbjct: 533 ----TRLEHIVRACSTQERIAAKSEFAFETLKKNRFLHKFLKEQP-DSIYQAYII 582
>gi|160944022|ref|ZP_02091252.1| hypothetical protein FAEPRAM212_01523 [Faecalibacterium prausnitzii
M21/2]
gi|158444698|gb|EDP21702.1| putative ribonuclease R [Faecalibacterium prausnitzii M21/2]
Length = 707
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 145/337 (43%), Gaps = 43/337 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL L ++ ID E ++DDA+S + DG ++ +H+AD + Y++PGS D +A
Sbjct: 241 GRMDLRALPIFTIDSAETKDIDDAISLTKTPDGGFELGVHIADVSNYVKPGSELDNEAFN 300
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+ PM P++L+ SL +G + A + + L DG++ +Y S+I+
Sbjct: 301 RATSVYYADQVVPMLPKQLSNGICSLNEGVLRLAFSCLMRLDKDGNLTDYRFVKSVIRSR 360
Query: 304 YMLTYESATELLHLNLEEE---------AELKILSEAAALRLQWRLQQGAIDTATLETRI 354
Y LL N ++E A+L + E R + R ++G +D + E +
Sbjct: 361 VKGVYSEINALLAGNADDELTGKYHEVLAQLPAMKELYGHRARLRKERGCMDIESGE--V 418
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
K+ ED I AM + E M+L + A + + YR + N +
Sbjct: 419 KLILDEDGHCIDVKKRTSGESEAM--IEEFMLLANQCAAHFARVKQIPFVYRVHEEPNAE 476
Query: 415 V--------------SAFAHLPEGPVRSSAIVKIMRAAAID----------------FRK 444
FA P SAI++ +R A + K
Sbjct: 477 KLERLHGLLQACGVNDHFAKDVPTPKELSAILEGVRGTAYEQIINVGMLRCMSKAVYEEK 536
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P H L L Y FTSPIRRY DL H + A L+G
Sbjct: 537 PKGHYGLVLQDYAHFTSPIRRYPDLAIHRIMTAQLKG 573
>gi|407460416|ref|YP_006738191.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci WC]
gi|405786793|gb|AFS25537.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci WC]
Length = 681
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 180/415 (43%), Gaps = 58/415 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 531
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+LE + + Q RIA + ++ +FL+ QP + Y+A I+
Sbjct: 532 ----TRLEHIVRACSTQERIAAKSEFAFETLKKNRFLHKFLKEQP-DSIYQAYII 581
>gi|406576446|ref|ZP_11052075.1| exoribonuclease R [Streptococcus sp. GMD6S]
gi|404461453|gb|EKA07384.1| exoribonuclease R [Streptococcus sp. GMD6S]
Length = 784
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMGGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|419780225|ref|ZP_14306075.1| ribonuclease R [Streptococcus oralis SK100]
gi|383185384|gb|EIC77880.1| ribonuclease R [Streptococcus oralis SK100]
Length = 784
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLENMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|422875979|ref|ZP_16922449.1| ribonuclease R [Streptococcus sanguinis SK1056]
gi|332362415|gb|EGJ40215.1| ribonuclease R [Streptococcus sanguinis SK1056]
Length = 782
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDEEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGVRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|262274079|ref|ZP_06051891.1| exoribonuclease II [Grimontia hollisae CIP 101886]
gi|262221889|gb|EEY73202.1| exoribonuclease II [Grimontia hollisae CIP 101886]
Length = 665
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/455 (25%), Positives = 197/455 (43%), Gaps = 59/455 (12%)
Query: 73 VDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQR 132
+D + + IR +L V V L+D + + +KGL + + D V+ + Q
Sbjct: 83 IDRFIGRVKMIRNKLNV-----VPDNPQLKDAIRAKT-KKGLSHDALAEGDWVVATLIQH 136
Query: 133 P-DGKKNWM------VYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNR 185
P G N+ + D N I P VT + + S + + D L R
Sbjct: 137 PLKGDNNFFCEISEKITDAND---KIAPWWVTLAKHNLPNQEPAPQSGW--EMLDESLTR 191
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLT L ID + ++DDAL + DG + I +ADPT Y+ G+ DK+A RG
Sbjct: 192 EDLTGLPFITIDSESTKDMDDALHTVANADGTFTLTIAIADPTAYVAQGTDLDKEARARG 251
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTY 304
+++LP PM P +L+ + SLR+ E+ A+ V + +DG+IA + + + IK
Sbjct: 252 FTIYLPGRNIPMLPRELSDDLCSLREEEIRPALCCRVTVLADGTIADDATFFAATIKSQG 311
Query: 305 MLTYESATELLHLNLEEE--------AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
L Y++ ++LL ++ ++ L A R+ WR + R ++
Sbjct: 312 RLAYDNVSDLLETGRCDKWTPSEVIAEQINALHGLAKARIAWREANAVTFPDRPDYRFEL 371
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAIATYGSFNNLALPYRGQPQSN 412
+ D +I ++V D A R+V E MI +C G + + F P+
Sbjct: 372 SEDND---VIAIHV-DFRRIANRMVEEAMITANICAGRTLREHFGFGVFNTHSGFAPEKI 427
Query: 413 IDVSAFAHLPEGPVRSSAIVKIMRAAA------------IDFR------------KPVRH 448
+D + G V + A+ + +A +D R P H
Sbjct: 428 VDAVELLNSHGGEVTAEALATLDGFSALRRWLNEQETTYLDNRIRKYQSYSEIGNTPAPH 487
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
+GL Y +TSPIR+Y D++ H +KA +RGE+
Sbjct: 488 FAMGLDVYATWTSPIRKYGDMVNHRLLKAIIRGEN 522
>gi|50548763|ref|XP_501851.1| YALI0C15048p [Yarrowia lipolytica]
gi|49647718|emb|CAG82164.1| YALI0C15048p [Yarrowia lipolytica CLIB122]
Length = 928
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 192/402 (47%), Gaps = 37/402 (9%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+KA ++ + K Y ID +A E+DD ++ DG V++ VADP Y S
Sbjct: 506 EKAREDWVGEKKRPFSHFYCIDGPDAHEIDDGVALESRSDGSKYVHVLVADPASYFGVSS 565
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
A R T+ + P+ M P+ + G+ L++G V ++ +S L +D + A+ +
Sbjct: 566 DVAHAAQSRVTTAYYPSGVVGMLPQVVQEFGL-LQKGAV-RSLVISAKL-NDKAAAKDPI 622
Query: 296 D-NSI-IKPTYM-----LTYESATELLHLNLEEE--AELKILSEAAALRLQWRLQQGAID 346
D NS+ I+ T + LTYE +L+ + E E +++K L ++ + R++ GA++
Sbjct: 623 DMNSVEIRLTKVDGGVGLTYEHVESVLNGSQESEHKSDIKDLHALSSRLRKHRIESGAVN 682
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ R+ + +V ++ A LVSE+MIL +A++G+ + + L YR
Sbjct: 683 LDVPKVRLNTETGQLD------HVSERNPEATLLVSELMILANSLVASFGAKHKIPLMYR 736
Query: 407 ---------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYV 457
G +S V+ EG S I +A P H L +P Y
Sbjct: 737 YQNMEEENKGTLESRDPVTGVIPFREGVSMWSTIEMAYISA-----DPKPHFSLAIPMYA 791
Query: 458 QFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWI 517
Q TSP+RRY DLL H+Q+ A L+G++PPFS ++ + V + R ++ Y +
Sbjct: 792 QSTSPLRRYGDLLNHFQLHAHLQGQNPPFSHSDVQKIIPHVFARQRTVKKGQEDMESYRL 851
Query: 518 IEFLRRQPKERQ-----YRALILRFIKDRTAALLLVEVGLQA 554
E+L ++ K + + L+L + ++++E+G+ A
Sbjct: 852 KEWLLKRLKSGELYPINWTGLVLEPRRQEMVRVMVMELGMIA 893
>gi|153802961|ref|ZP_01957547.1| exoribonuclease II [Vibrio cholerae MZO-3]
gi|124121484|gb|EAY40227.1| exoribonuclease II [Vibrio cholerae MZO-3]
Length = 583
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/456 (27%), Positives = 201/456 (44%), Gaps = 55/456 (12%)
Query: 76 VMQELVAIRKRLRVF-AKVKVSSGELLEDKLENQV-LQKGLLLEFKKDSDRVLLAVAQRP 133
+ Q L R+++F K+ V+ KL + +KGL ++ D V+ + + P
Sbjct: 79 IEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHP 138
Query: 134 ----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLT 189
DG + + A+ I P VT + + I ++ Q +D L R+DLT
Sbjct: 139 LKGDDGFFVQISHKITDANDKIAPWWVTLAENNLPNSEPAGIDDW-QLKDDADLVREDLT 197
Query: 190 HLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVF 249
L ID + ++DDAL A +L +G + I +ADPT YI P DK A +RG +++
Sbjct: 198 ALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIY 257
Query: 250 LPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYML 306
LP PM P LA E SL + +V A+ SV + DG I + + N IK L
Sbjct: 258 LPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARL 315
Query: 307 TYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
Y+ ++ L E+ + ++ L + R WR + + R +++
Sbjct: 316 VYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSA 375
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAIAT---YGSFNNLA--------- 402
D ++ ++ D A RLV E MI +C G+ + T +G FN A
Sbjct: 376 DND---VVAIHA-DMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMAD 431
Query: 403 ----LPYRGQPQSNID----VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+ G P ++ + V FA L E + I K + I +P+ H
Sbjct: 432 VVELMTVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPH 490
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 491 FAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|407456436|ref|YP_006735009.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci VS225]
gi|405783697|gb|AFS22444.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci VS225]
Length = 682
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 180/415 (43%), Gaps = 58/415 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 188 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 240
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 241 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 300
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 301 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 359
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 360 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 415
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 416 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 474
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 475 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 532
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+LE + + Q RIA + ++ +FL+ QP + Y+A I+
Sbjct: 533 ----TRLEHIVRACSTQERIAAKSEFAFETLKKNRFLHKFLKEQP-DSIYQAYII 582
>gi|332287192|ref|YP_004422093.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
6BC]
gi|384450345|ref|YP_005662945.1| exoribonuclease, VacB/Rnb family [Chlamydophila psittaci 6BC]
gi|384451345|ref|YP_005663943.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
01DC11]
gi|384452321|ref|YP_005664918.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
08DC60]
gi|384453295|ref|YP_005665891.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
C19/98]
gi|384454273|ref|YP_005666868.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
02DC15]
gi|325506838|gb|ADZ18476.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
6BC]
gi|328914439|gb|AEB55272.1| exoribonuclease, VacB/Rnb family [Chlamydophila psittaci 6BC]
gi|334692076|gb|AEG85295.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
C19/98]
gi|334693055|gb|AEG86273.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
01DC11]
gi|334694030|gb|AEG87247.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
02DC15]
gi|334695010|gb|AEG88226.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
08DC60]
Length = 681
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 180/415 (43%), Gaps = 58/415 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 531
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+LE + + Q RIA + ++ +FL+ QP + Y+A I+
Sbjct: 532 ----TRLEHIVRACSTQERIAAKSEFAFETLKKNRFLHKFLKEQP-DSIYQAYII 581
>gi|306825393|ref|ZP_07458733.1| ribonuclease R [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304432331|gb|EFM35307.1| ribonuclease R [Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 784
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNMELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|407453737|ref|YP_006732845.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci 84/55]
gi|405780496|gb|AFS19246.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci 84/55]
Length = 691
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 180/415 (43%), Gaps = 58/415 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 531
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+LE + + Q RIA + ++ +FL+ QP + Y+A I+
Sbjct: 532 ----TRLEHIVRACSTQERIAAKSEFAFETLKKNRFLHKFLKEQP-DSIYQAYII 581
>gi|386580292|ref|YP_006076697.1| exoribonuclease R [Streptococcus suis JS14]
gi|319758484|gb|ADV70426.1| exoribonuclease R [Streptococcus suis JS14]
Length = 789
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 168/358 (46%), Gaps = 55/358 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEQDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DKEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ A K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNQEKLATYKAIVPSVELMVKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TTEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
M+ A +G LG Y FTSPIRRY DLL H V+ G +P A E
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMVRDY--GHNPTEKAEHFE 590
>gi|149278034|ref|ZP_01884173.1| exoribonuclease II [Pedobacter sp. BAL39]
gi|149231232|gb|EDM36612.1| exoribonuclease II [Pedobacter sp. BAL39]
Length = 709
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 173/384 (45%), Gaps = 45/384 (11%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
Q D + +R+D + ID +A + DDA+S +L +G +V +H+AD Y+ P S
Sbjct: 246 QITADEIKDRRDFRETVTFTIDPADAKDFDDAISFKKLDNGHYEVGVHIADVAHYVTPNS 305
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR--QGEVCNAVTVSVVLHSDGSIAEY 293
DK+A R TSV+L PM PE+L+ SLR + ++C A L + +I
Sbjct: 306 ALDKEAYGRATSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFAAVFE--LDNKANIINE 363
Query: 294 SVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLET 352
++I +YE A E++ + E+ L+E A + + + GAI + E
Sbjct: 364 WFGRTVIHSDRRFSYEEAQEVIENKTGDFSEEILKLNELAYILRDKKFKNGAISFESTEV 423
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY----------------- 395
+ K+ ED +P + +YV+++ D A +L+ + M+L + +A +
Sbjct: 424 KFKL--DEDGKP-LGVYVKERKD-AHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFIYRS 479
Query: 396 ---------GSFNNLA--LPYRGQPQSNIDVS-AFAHL---PEGPVRSSAIVKIM---RA 437
G+F A Y+ +S+ D++ + +L EG + + ++ A
Sbjct: 480 HDSPNLENLGNFALFAARFGYKINMKSDKDIAKSLNYLMEDVEGKKEQNVLTQLAIRSMA 539
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASI 497
A+ K H L Y FTSPIRRY D++ H + A L E A + E AS
Sbjct: 540 KAVYTTKKTSHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNKEKSA-DAEEYEIAASH 598
Query: 498 VNMQTRIARRLSNTSLRYWIIEFL 521
+ + A S++Y E+L
Sbjct: 599 SSTMEKRAADAERASIKYKQAEYL 622
>gi|436834031|ref|YP_007319247.1| ribonuclease R [Fibrella aestuarina BUZ 2]
gi|384065444|emb|CCG98654.1| ribonuclease R [Fibrella aestuarina BUZ 2]
Length = 898
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 172/396 (43%), Gaps = 50/396 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R+D + + ID +A + DDALS L +G ++ +H+AD T Y+ PG+ +
Sbjct: 366 EAEIARRRDFRGVTTFTIDPVDAKDFDDALSVRYLDNGNYEIGVHIADVTHYVLPGTELE 425
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVD 296
++A KR TSV+L PM PEKL+ SLR E + +T S V L +D I
Sbjct: 426 EEAYKRATSVYLVDRVVPMLPEKLSNGVCSLRPHE--DKLTFSAVFELTTDAKIEAEWFG 483
Query: 297 NSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+ I +YE A +L+ + EL +L+E A R + GAI+ T E R K
Sbjct: 484 RTAIHSDRRFSYEEAQAILNAGEGDFVKELTLLNELAHKLRDQRFRHGAINFETPEVRFK 543
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYRGQP 409
+ P ++ +D +L+ E M+L + +A + G N + YR
Sbjct: 544 LDENGVPLAVVPKIRQD----TNKLIEEFMLLANKRVAEFVVSLSKGPDEN-TMVYRVHE 598
Query: 410 QSNID-VSAFAHL-----------------------------PEGPVRSSAIVKIMRAAA 439
N D + FA PE + S V+ M A
Sbjct: 599 GPNEDKLQVFADFARKLGYKLNVTSDKLSTAMNKFMADIEGKPEQTMLSQLAVRTMSKAR 658
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL-RGESPPFSAGQLEGMASIV 498
+ H L Y FTSPIRRY D++AH ++ L RG S A LE
Sbjct: 659 YS-TDDIGHFGLAFRRYSHFTSPIRRYPDMMAHRLLQHYLDRGRSVDQEA--LESRCKHS 715
Query: 499 NMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
+ + + A S++Y +EF+ R P ++++ +I
Sbjct: 716 SEREKAAAEAERASIKYKQVEFMSRMPADQEFEGVI 751
>gi|284046031|ref|YP_003396371.1| exoribonuclease II [Conexibacter woesei DSM 14684]
gi|283950252|gb|ADB52996.1| Exoribonuclease II [Conexibacter woesei DSM 14684]
Length = 601
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 168/387 (43%), Gaps = 55/387 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ R+DL L + ID A + DDA+SA + R ++++H+AD + Y+ PG L D++
Sbjct: 131 DVPGRRDLRDLTTFTIDPATAKDFDDAISAEQTGPDRWRIWVHIADVSAYVRPGDLIDRE 190
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV++P PM PE L+ SLR GE AVT + LH S+A S S I
Sbjct: 191 AYRRGTSVYVPAKVEPMLPEGLSNVACSLRPGEDRLAVTAELELHGP-SVARASFYRSTI 249
Query: 301 KPTYMLTYESATELL---HLNLEEEAE-LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ L Y+ + LE A+ L AAA R QGA+ ++E
Sbjct: 250 RSDERLDYDRVDRIFAGAEPALEPWAQPLAAARGAAAALAARRDAQGALAIESVEPEFAF 309
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL--------------- 401
D E + + RL+ +MIL E +A S +
Sbjct: 310 ----DREGHVTAAAGVVQTESHRLIEHLMILANEQVARLLSERKVPTLYRVHERPDGSAA 365
Query: 402 ---------------ALPYRGQPQSNIDVSAFA-HLPEGPVR---------SSAIVKIMR 436
LP + PQ + A A HL VR +S +++ ++
Sbjct: 366 ERLIAQLASLGVPTPPLPEQPTPQQGAEAIAVASHLVAAYVRRSRRGGIGLNSLVLRALK 425
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ-VKACLRGESPPFSAGQLEGMA 495
A D R + H LGL Y FTSPIRRY DL+ H + A GE P A +L G
Sbjct: 426 QARYDPRN-LGHTGLGLTHYCHFTSPIRRYPDLVCHRALLSAVGAGEDAP-QASRLPGAG 483
Query: 496 SIVNMQTRIA---RRLSNTSLRYWIIE 519
+ + R A R ++ R +++E
Sbjct: 484 DWASARERDAMQVERAADDVARCFLLE 510
>gi|293365241|ref|ZP_06611958.1| ribonuclease R [Streptococcus oralis ATCC 35037]
gi|307703781|ref|ZP_07640722.1| ribonuclease R [Streptococcus oralis ATCC 35037]
gi|322374464|ref|ZP_08048978.1| ribonuclease R [Streptococcus sp. C300]
gi|291316691|gb|EFE57127.1| ribonuclease R [Streptococcus oralis ATCC 35037]
gi|307622616|gb|EFO01612.1| ribonuclease R [Streptococcus oralis ATCC 35037]
gi|321279964|gb|EFX57003.1| ribonuclease R [Streptococcus sp. C300]
Length = 784
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 161/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|229526684|ref|ZP_04416088.1| exoribonuclease II [Vibrio cholerae bv. albensis VL426]
gi|229336842|gb|EEO01860.1| exoribonuclease II [Vibrio cholerae bv. albensis VL426]
Length = 678
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 187/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I+++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIADW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGHNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|414082981|ref|YP_006991687.1| ribonuclease R [Carnobacterium maltaromaticum LMA28]
gi|412996563|emb|CCO10372.1| ribonuclease R [Carnobacterium maltaromaticum LMA28]
Length = 776
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 156/336 (46%), Gaps = 50/336 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DLT+ + ID ++A +LDDA++ +L +G + +H+AD + Y+ S D +A +
Sbjct: 229 NRRDLTNEMIVTIDGEDAKDLDDAVTVRKLDNGNYHLGVHIADVSYYVTEDSALDGEAFE 288
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L PM P +L+ SL E ++ + ++S G + + + S+I +
Sbjct: 289 RATSVYLTDRVIPMLPHRLSNGLCSLNPNEDRLTMSCEMEINSAGEVVNHDIFPSVIHSS 348
Query: 304 YMLTYESATELLHLNLEEEAELK-----------ILSEAAALRLQWRLQQGAIDTATLET 352
+TY + ++L +E++ E++ ++ E L + R +GAID E
Sbjct: 349 KRMTYTAINQIL---MEKDPEVRAEYQEFVPMFELMGELHELLVNKRQARGAIDFEAPEA 405
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
+I V N PE I+ + RL+ M+ E +A + ++ YR Q +
Sbjct: 406 QIIVNNEGHPEEIVMRH----RGIGERLIESFMLSANETVAEHCFKLDVPFIYRVHEQPD 461
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D V+AF L PE V S+ +++ M+ A D
Sbjct: 462 SDRMQRFMEFVTAFGILMKGTSGEVSPKQLQKVLRGVSGEPEEAVISTMLLRSMKQAKYD 521
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
+ + H LG Y FTSPIRRY DL+ H +++
Sbjct: 522 -AEALGHFGLGAEFYTHFTSPIRRYPDLIVHRLIRS 556
>gi|419970937|ref|ZP_14486407.1| ribonuclease R [Porphyromonas gingivalis W50]
gi|392609658|gb|EIW92462.1| ribonuclease R [Porphyromonas gingivalis W50]
Length = 731
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 167/383 (43%), Gaps = 46/383 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ L R+D + + ID +A + DDA+S L+D +V +H+AD + Y+ G +
Sbjct: 269 TEEELARREDFRSILTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGII 328
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R TS++L T PM PE+L + SLR E A + ++ + + +Y + +
Sbjct: 329 DQEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICH 388
Query: 298 SIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+IK YE A ++ + EA LK+ A LR + R Q GAI E R +
Sbjct: 389 SVIKSDRRFAYEEAQAVIETGEGDCKEAILKLNELAQRLR-KERFQNGAIAFERKEVRFE 447
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------TYGS--------FNNL 401
+ P +I ++ A +L+ E M+L +A T G ++L
Sbjct: 448 IDEKGRPLGVI----VKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDL 503
Query: 402 ALPYRGQ---------------PQSNIDVSA--------FAHLPEGPVRSSAIVKIMRAA 438
P + + SN++VS + PE + S+ ++ M A
Sbjct: 504 PDPDKLETLSDFIRRFGYKLRTTGSNVEVSKSINSLLDNIQNKPEENLISTVAIRSM-AK 562
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
AI + H L Y FTSPIRRY DL+ H + L G S E
Sbjct: 563 AIYSTDNIGHYGLAFDFYTHFTSPIRRYPDLMVHRLLTKYLSGGS-SVDKNDYEEKCKHS 621
Query: 499 NMQTRIARRLSNTSLRYWIIEFL 521
+ ++A S++Y +EF+
Sbjct: 622 SAMEQLAASAERASIKYKQVEFM 644
>gi|254304250|ref|ZP_04971608.1| ribonuclease R [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148324442|gb|EDK89692.1| ribonuclease R [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 700
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 176/380 (46%), Gaps = 39/380 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A
Sbjct: 243 NRKDLTKLPIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKDTVLDLEARH 302
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+L PMFP++++ SL + E + + + G + Y V S+IK
Sbjct: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
Query: 304 YMLTYESATELLHLN---LEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ +TY+ +L + + E ++ LK + E + + + +G+ID E +KV
Sbjct: 363 HRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRAKKFTRGSIDFELPE--LKV 420
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------ 410
ED + + + D+ + +++ + MI E +A + LA YR +
Sbjct: 421 VLDEDNNKVEKVLLRDRGE-GEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKI 479
Query: 411 -----------------SNIDVSAFAHLPE--GPVRSSAIVK--IMRA--AAIDFRKPVR 447
N+ F + E +S +V I+RA A + +
Sbjct: 480 VVLNEILAKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIG 539
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
H L Y FTSPIRRY DL+ H + + + L+ +A ++ R+A +
Sbjct: 540 HFGLSSSHYTHFTSPIRRYADLMVHRVLFSSIDNSVKQLKLADLDEIAQHISKTERVAMK 599
Query: 508 LSNTSLRYWIIEFLRRQPKE 527
+ + S+R ++E+++++ E
Sbjct: 600 VEDESVRIKLVEYMQKRVGE 619
>gi|451979665|ref|ZP_21928079.1| Ribonuclease R [Nitrospina gracilis 3/211]
gi|451763103|emb|CCQ89276.1| Ribonuclease R [Nitrospina gracilis 3/211]
Length = 704
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 155/342 (45%), Gaps = 44/342 (12%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ +++ R+DLT ++ ID + A + DDA++ R +D ++ +H+AD + Y+ G
Sbjct: 235 LEISDEERSRRRDLTDQMIFTIDGERAKDFDDAVTLTREKD-LYRLGVHIADVSHYVTEG 293
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S D++A KRGTS++ PM P KL+ E SLR E ++ +V +S G + +Y+
Sbjct: 294 SPLDEEAFKRGTSIYYAEGVIPMLPFKLSNEVCSLRPNEEHLTLSCDIVFNSKGEVVDYN 353
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDT 347
+ +SII+ TY LL + + E + LK + + + + + R Q+G++D
Sbjct: 354 IYDSIIESKIRFTYTQVASLLE-DGDPEGQFDEVMPILKDMEKLSRILRKKRFQEGSVDF 412
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E I + + I + + A ++ E M+ +A + NL + +R
Sbjct: 413 NIPEAEILMTQ----DGKIQTIRKAPHNIAHEIIEEFMLSANRVVAEDMAKKNLPVIHRI 468
Query: 408 QPQSNID----VSAFA----------------HL----------PEGPVRSSAIVKIMRA 437
+ + D FA HL PE + +++ M+
Sbjct: 469 HEEPDADRIHRFGEFAADFGYRLPSFKKVKSTHLQKLLERARDKPEERALNYVLLRSMKK 528
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A + P H LG Y FTSPIRRY DL H VK L
Sbjct: 529 AVYSEKDP-GHYCLGFEHYTHFTSPIRRYPDLFTHRVVKEYL 569
>gi|389815599|ref|ZP_10206862.1| ribonuclease R [Planococcus antarcticus DSM 14505]
gi|388465805|gb|EIM08119.1| ribonuclease R [Planococcus antarcticus DSM 14505]
Length = 774
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 161/340 (47%), Gaps = 48/340 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L +R+DL +V ID +A +LDDA+ ++ +DG K+ +H+AD + Y+ GS D++
Sbjct: 246 DLTDRRDLRGEQVVTIDGADAKDLDDAVQVVKYEDGTYKLGVHIADVSHYVTEGSAIDRE 305
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A R TS++L PM P +L+ SL ++ ++ + G + + + S+I
Sbjct: 306 AYDRATSIYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIFNDQGEVQSHEIFQSVI 365
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
+ +TY E+L + +E E +++ E A + R+++GAID E+
Sbjct: 366 NTSARMTYTDVYEILEQDNQELKERYSELVPMFELMKELAGVLSAKRMRRGAIDFDFKES 425
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR---- 406
++ V P +++ V ++ A RL+ E M+ E +A + F+ + +P YR
Sbjct: 426 KVLVDENGYP---VDVVVRERT-VAERLIEEFMLAANETVAEH--FHRMEVPAIYRIHED 479
Query: 407 GQPQ---------SNID------------------VSAFAHLPEGPVRSSAIVKIMRAAA 439
+P+ +N V + A PE PV S+ +++ M+ A
Sbjct: 480 PKPEKLQRFFEFVTNFGIVVKGSGTQIHPRALQEIVESIAGTPEEPVVSTMMLRSMQQAK 539
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 540 YS-SESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 578
>gi|421756803|ref|ZP_16193699.1| ribonuclease R [Francisella tularensis subsp. tularensis 80700103]
gi|409093238|gb|EKM93191.1| ribonuclease R [Francisella tularensis subsp. tularensis 80700103]
Length = 742
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 150/348 (43%), Gaps = 47/348 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A R + G K+YI +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHRTKSGSWKLYIAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
M A G L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|319789562|ref|YP_004151195.1| ribonuclease R [Thermovibrio ammonificans HB-1]
gi|317114064|gb|ADU96554.1| ribonuclease R [Thermovibrio ammonificans HB-1]
Length = 716
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/350 (28%), Positives = 158/350 (45%), Gaps = 41/350 (11%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ +E+ + R DL + ID + A + DDA++ +L +G ++++H+AD + Y++PG
Sbjct: 243 LEVSEEEVKGRVDLRQQLCFTIDGENARDFDDAVAIEKLPNGNYRLFVHIADVSHYVKPG 302
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S D++A +RGTSV+ P PM PE+L+ SL T + ++ G + +Y
Sbjct: 303 SALDREAYRRGTSVYFPDRCIPMLPERLSNGICSLNPNVDRLTFTCEMEINKKGMVVDYK 362
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDT 347
+ SII LTY A +L + E + LK + E A + + R ++G++D
Sbjct: 363 IYESIIHSKARLTYTIAQRILDGDREAIEQFPHVVESLKTMLELAKILNKKRYKRGSLDF 422
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
L + V N E EP +++Y ++ + R++ E MI E +A Y + + YR
Sbjct: 423 -DLPEPVVVLNAEG-EP-VDIYKAERL-WSHRIIEEFMIAANETVAEYMFWTDYPSIYRV 478
Query: 408 ---------QPQSNIDVSAFAHLP------------------EGPVRSSAIVKIM-RAAA 439
Q N S +P EG + +M R A
Sbjct: 479 HESPDREKLQEFLNFVRSLGIRVPAVKNDIQPKLLQKILEQVEGKPEEKLVNYLMLRTMA 538
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFS 487
P G GL Y FTSPIRRY DL H VK L+G P S
Sbjct: 539 RAKYSPDNIGHFGLASTYYTHFTSPIRRYADLQLHRLVKMALKGMFKPES 588
>gi|126654057|ref|ZP_01725884.1| ribonuclease R [Bacillus sp. B14905]
gi|126589462|gb|EAZ83608.1| ribonuclease R [Bacillus sp. B14905]
Length = 731
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 52/345 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL H + ID +A +LDDA++ ++ DG K+ +H+AD + Y+ GS+
Sbjct: 152 TEADLVGRRDLRHETIVTIDGADAKDLDDAVTVIKNVDGTYKLGVHIADVSYYVTQGSVI 211
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R TSV+L PM P +L+ SL ++ +++ + G++ + +
Sbjct: 212 DLEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDASGNVISHEIFQ 271
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE------------LKILSEAAALRLQWRLQQGAI 345
S+IK T +TY+ ++ LEE+ E K ++E + + + R +GAI
Sbjct: 272 SVIKTTERMTYKDVYKI----LEEQDEALIKRYEPLVPMFKNMAELSGILRRKRESRGAI 327
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
D E+++ V P +++ + ++ A +L+ + M+ E +A + + N+ Y
Sbjct: 328 DFDFKESKVIVNEEGWP---VDIEIRERT-VAEKLIEDFMLAANETVAEHFHWMNVPFIY 383
Query: 406 R------------------------------GQPQSNIDV-SAFAHLPEGPVRSSAIVKI 434
R P++ DV A +PE PV S+ +++
Sbjct: 384 RIHEDPKPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRS 443
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
M+ A + + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 444 MQQAKY-YPESLGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYL 487
>gi|329956491|ref|ZP_08297088.1| ribonuclease R [Bacteroides clarus YIT 12056]
gi|328524388|gb|EGF51458.1| ribonuclease R [Bacteroides clarus YIT 12056]
Length = 719
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 165/376 (43%), Gaps = 45/376 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D ++ + ID +A + DDALS +L+D +V +H+AD T Y+ G + DK+A KR
Sbjct: 263 REDFRNITTFTIDPKDAKDFDDALSVRKLKDNLWEVGVHIADVTHYVTEGGIIDKEAEKR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G + + +++IK
Sbjct: 323 ATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSAIFEMTDKGEVKNSRIVHTVIKSDR 382
Query: 305 MLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
TYE A +++ + +EE LK+ S A LR + R GAI+ E + ++
Sbjct: 383 RFTYEEAQQIIETKEGDFKEEI-LKLDSLAKILR-EKRFAAGAINFDRYEVKFEIDEKGK 440
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQSN 412
P +++Y ++ D A +LV E M+L +A + PYR P+
Sbjct: 441 P---VSVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKNKKPKVFPYRIHDLPDPEKL 496
Query: 413 IDVSAFAHLPEGPVRSSAIV--------------------KIMRAAAIDFRKPVRHGV-- 450
++S F +R+S ++ +I + R+ V
Sbjct: 497 DNLSQFIARFGYKLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSVHN 556
Query: 451 -----LGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIA 505
L Y FTSPIRRY D++ H + L S + E + + +IA
Sbjct: 557 IGHYGLAFDYYTHFTSPIRRYPDMMVHRLLTKYLDLGGRSVSEQKYEALCEHSSGMEQIA 616
Query: 506 RRLSNTSLRYWIIEFL 521
S++Y +E++
Sbjct: 617 ANAERASIKYKQVEYM 632
>gi|307708609|ref|ZP_07645073.1| ribonuclease R [Streptococcus mitis NCTC 12261]
gi|307615358|gb|EFN94567.1| ribonuclease R [Streptococcus mitis NCTC 12261]
Length = 784
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 163/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L ++E+ E ++++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYNDVNDILAGDVEKRQEYQKIVPSIELMAKLHEILENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYSR 578
>gi|297580173|ref|ZP_06942100.1| exoribonuclease II [Vibrio cholerae RC385]
gi|297535819|gb|EFH74653.1| exoribonuclease II [Vibrio cholerae RC385]
Length = 678
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVMRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVLELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|313237070|emb|CBY12292.1| unnamed protein product [Oikopleura dioica]
Length = 907
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 199/442 (45%), Gaps = 60/442 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DL + ++D ++DDAL +L +G +V +H+AD + +I+PG+
Sbjct: 426 TEEEMAKRVDLREYDIASVDPPGCTDIDDALHCKKLPNGNYEVGVHIADVSHFIKPGTAL 485
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L M P L+ SLR GE A + L + I
Sbjct: 486 DEEAAQRGTSVYLADNRIDMVPILLSSNLCSLRGGEERLAFSTIWELDDNAKIVSVKFHK 545
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSE--------AAALRLQWRLQQGAIDTAT 349
S+IK TYE A + ++++++ L+E A L+ Q RL+ GA+ A+
Sbjct: 546 SVIKSKSAFTYEEA----QIRIDDKSKTDSLTESLRGLNYLAKKLKAQ-RLEDGALTLAS 600
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSFNNLALPYR- 406
+E R + + E +P I+LY ++ + +V E M+L ++A + F A+ R
Sbjct: 601 VEVRFHL-DSETADP-IDLYTKELKE-TNSMVEEFMLLANCSVAEHIRTEFPQSAVLRRH 657
Query: 407 -GQPQSNIDVSAFA------HL-----------------PEGPVRSSAIVKIMRAAAI-- 440
P SN D A HL P P+ ++ ++++M ++
Sbjct: 658 PKPPVSNFDPLVRAAQAKGFHLNVNSSRELADSLNLAVDPSDPMVNT-VLRVMSTRSMMQ 716
Query: 441 ------DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPP---FSAGQL 491
F H L P Y FTSPIRRY D++ H + A + ++ +
Sbjct: 717 AVYFCTGFESDCWHYGLAAPIYTHFTSPIRRYADIMVHRALAASIGADTTTPDILDKNHI 776
Query: 492 EGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVG 551
+ +N + R+A++ S+ + R+Q R A +++ +K +L+ + G
Sbjct: 777 NNVCKNINFRNRMAQQAQRASIALHTQLYFRKQ-GARMEEAYVMQ-VKQNAIGVLIPQFG 834
Query: 552 LQAAAWVSVGAQIGDEVEVKVE 573
++ +++ +I E E+ E
Sbjct: 835 MEGTIFLN---EIEKEAELDEE 853
>gi|157363607|ref|YP_001470374.1| ribonuclease R [Thermotoga lettingae TMO]
gi|157314211|gb|ABV33310.1| ribonuclease R [Thermotoga lettingae TMO]
Length = 716
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 158/356 (44%), Gaps = 51/356 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
ED + +RKD + V+ ID + A + DDA+S ++ + + +H+AD + Y++ GS D
Sbjct: 239 EDEMKDRKDFRNTLVFTIDGENAKDFDDAVSIKKISKDKFLLSVHIADVSHYVQEGSAID 298
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A RGTSV+L PM P KL+ SL +G+ TV +V+ +G+ +Y + S
Sbjct: 299 REAFHRGTSVYLLDKVVPMLPFKLSNNLCSLVEGKDRLTFTVQMVIDREGNTVDYEISPS 358
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKI----------LSEAAALRLQWRLQQGAI-DT 347
+I+ LTY + + + +E A+ K+ + E + + ++R ++GAI D
Sbjct: 359 VIRSKKRLTYTLVNQ--YFSGDESAKKKLGKRICSSLNRMLELSEILREYRRRRGAILDI 416
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E I + I+ + PA L+ E MI E +A F+N LP+
Sbjct: 417 EGGEVDIIIDEKGRTVDIL----PRRRGPAEVLIEEFMIKANETVAEV--FHNAGLPFVY 470
Query: 408 QPQSNIDVSAFAHLPE-----------------------------GPVRSSAIVKIMRAA 438
+ D L E P+RSS ++R+
Sbjct: 471 RVHEEPDPEFLIQLKEYVEALGLKVKFPKQIHPGVLQQLLEAVKDHPLRSSVEKLLVRSM 530
Query: 439 AIDFRKPVRHGVLGLP--GYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
+ G GL Y FTSPIRRY DL+ H +K L + F+ Q+E
Sbjct: 531 KRAIYSALNVGHFGLASFAYTHFTSPIRRYPDLVVHRLLKLYL-SQGGRFTPKQIE 585
>gi|134301465|ref|YP_001121433.1| ribonuclease R [Francisella tularensis subsp. tularensis WY96-3418]
gi|421753074|ref|ZP_16190078.1| ribonuclease R [Francisella tularensis subsp. tularensis 831]
gi|421758670|ref|ZP_16195513.1| ribonuclease R [Francisella tularensis subsp. tularensis 70102010]
gi|134049242|gb|ABO46313.1| ribonuclease R [Francisella tularensis subsp. tularensis WY96-3418]
gi|409088290|gb|EKM88364.1| ribonuclease R [Francisella tularensis subsp. tularensis 831]
gi|409091949|gb|EKM91933.1| ribonuclease R [Francisella tularensis subsp. tularensis 70102010]
Length = 765
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 150/348 (43%), Gaps = 47/348 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A R + G K+YI +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHRTKSGSWKLYIAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
M A G L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|34541350|ref|NP_905829.1| ribonuclease R [Porphyromonas gingivalis W83]
gi|34397666|gb|AAQ66728.1| ribonuclease R [Porphyromonas gingivalis W83]
Length = 702
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 167/383 (43%), Gaps = 46/383 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ L R+D + + ID +A + DDA+S L+D +V +H+AD + Y+ G +
Sbjct: 240 TEEELARREDFRSILTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGII 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R TS++L T PM PE+L + SLR E A + ++ + + +Y + +
Sbjct: 300 DQEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICH 359
Query: 298 SIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+IK YE A ++ + EA LK+ A LR + R Q GAI E R +
Sbjct: 360 SVIKSDRRFAYEEAQAVIETGEGDCKEAILKLNELAQRLR-KERFQNGAIAFERKEVRFE 418
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------TYGS--------FNNL 401
+ P +I ++ A +L+ E M+L +A T G ++L
Sbjct: 419 IDEKGRPLGVI----VKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDL 474
Query: 402 ALPYRGQ---------------PQSNIDVSA--------FAHLPEGPVRSSAIVKIMRAA 438
P + + SN++VS + PE + S+ ++ M A
Sbjct: 475 PDPDKLETLSDFIRRFGYKLRTTGSNVEVSKSINSLLDNIQNKPEENLISTVAIRSM-AK 533
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
AI + H L Y FTSPIRRY DL+ H + L G S E
Sbjct: 534 AIYSTDNIGHYGLAFDFYTHFTSPIRRYPDLMVHRLLTKYLSGGS-SVDKNDYEEKCKHS 592
Query: 499 NMQTRIARRLSNTSLRYWIIEFL 521
+ ++A S++Y +EF+
Sbjct: 593 SAMEQLAASAERASIKYKQVEFM 615
>gi|422823160|ref|ZP_16871348.1| ribonuclease R [Streptococcus sanguinis SK405]
gi|324993810|gb|EGC25729.1| ribonuclease R [Streptococcus sanguinis SK405]
Length = 782
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVIKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|406586436|ref|ZP_11061367.1| exoribonuclease R [Streptococcus sp. GMD1S]
gi|419813657|ref|ZP_14338470.1| exoribonuclease R [Streptococcus sp. GMD2S]
gi|419817020|ref|ZP_14341191.1| exoribonuclease R [Streptococcus sp. GMD4S]
gi|404466561|gb|EKA11893.1| exoribonuclease R [Streptococcus sp. GMD4S]
gi|404472768|gb|EKA17183.1| exoribonuclease R [Streptococcus sp. GMD2S]
gi|404474116|gb|EKA18436.1| exoribonuclease R [Streptococcus sp. GMD1S]
Length = 784
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMGGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRREFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGIAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|320450022|ref|YP_004202118.1| ribonuclease R [Thermus scotoductus SA-01]
gi|320150191|gb|ADW21569.1| ribonuclease R [Thermus scotoductus SA-01]
Length = 746
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 162/344 (47%), Gaps = 50/344 (14%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E L R+D HL+V+ ID +A + DDA+ RL G ++ +H+AD + Y++ G
Sbjct: 216 LEIPEAELARRQDFRHLRVFTIDGVDAKDFDDAIHVERLPKG-YRIGVHIADVSHYVKEG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
D++A RGTSV+LP PM PE+L+ SL+ E ++V V L D +
Sbjct: 275 RALDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLKPHEDRLVLSVLVELDEDLKVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELLHLNLEEEA----ELKILSEAAALRLQWRLQQGAIDT 347
+I+ +TY E+ E L EE A +L +L + Q RL+ G++D
Sbjct: 335 FAEGVIRSVARMTYTEVEAFAEGFGLP-EEHAFLAEDLNLLLDLTQRLRQKRLEAGSLDF 393
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALP-- 404
+ E +++V + L++ Q +P R L+ E+M+L +A + N LP
Sbjct: 394 SFPEVKVEVEDG-------TLHLIPQEEPRARSLIEELMLLANRVVAEH--LVNKGLPGL 444
Query: 405 YRGQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMR 436
+R + + +A A L PE PV ++ +++ +R
Sbjct: 445 FRVHEEPLEEGYGKLRTALARLGYTLPEKLSSKALQRVLLEAKGRPEEPVVANLVLRSLR 504
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
A + H L + Y+ FTSPIRRY DL+ H +KA LR
Sbjct: 505 LARYAAEN-LGHFGLAMEHYLHFTSPIRRYPDLVVHRVLKAILR 547
>gi|334146390|ref|YP_004509317.1| ribonuclease R [Porphyromonas gingivalis TDC60]
gi|333803544|dbj|BAK24751.1| ribonuclease R [Porphyromonas gingivalis TDC60]
Length = 731
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 167/383 (43%), Gaps = 46/383 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ L R+D + + ID +A + DDA+S L+D +V +H+AD + Y+ G +
Sbjct: 269 TEEELARREDFRSVLTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGII 328
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R TS++L T PM PE+L + SLR E A + ++ + + +Y + +
Sbjct: 329 DQEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICH 388
Query: 298 SIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+IK YE A ++ + EA LK+ A LR + R Q GAI E R +
Sbjct: 389 SVIKSDRRFAYEEAQAVIETGEGDCKEAILKLNELAQRLR-KERFQNGAIAFERKEVRFE 447
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------TYGS--------FNNL 401
+ P +I ++ A +L+ E M+L +A T G ++L
Sbjct: 448 IDEKGRPLGVI----VKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDL 503
Query: 402 ALPYRGQ---------------PQSNIDVSA--------FAHLPEGPVRSSAIVKIMRAA 438
P + + SN++VS + PE + S+ ++ M A
Sbjct: 504 PDPDKLETLSDFIRRFGYKLRTTGSNVEVSKSINSLLDNIQNKPEENLISTVAIRSM-AK 562
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
AI + H L Y FTSPIRRY DL+ H + L G S E
Sbjct: 563 AIYSTDNIGHYGLAFDFYTHFTSPIRRYPDLMVHRLLTKYLSGGS-SVDKNDYEEKCKHS 621
Query: 499 NMQTRIARRLSNTSLRYWIIEFL 521
+ ++A S++Y +EF+
Sbjct: 622 SAMEQLAASAERASIKYKQVEFM 644
>gi|188586620|ref|YP_001918165.1| ribonuclease R [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351307|gb|ACB85577.1| ribonuclease R [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 709
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 151/332 (45%), Gaps = 52/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+ + L ID +A +LDDA+S +L +G +++ +H+AD + Y+ G+ DK+A +
Sbjct: 246 GRELIQGLPTVTIDGSDAKDLDDAVSLEKLDNGNMELGVHIADVSYYVREGTPLDKEARQ 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P KL+ SL G ++ V L +G IA Y + S+IK
Sbjct: 306 RGTSVYLVDRVLPMLPPKLSNNICSLNPGVERLTMSAFVELTEEGDIANYRLTPSVIKSN 365
Query: 304 YMLTYESATELLHLNLEEEA----------ELKILSEAAALRLQWRLQQGAIDTATLETR 353
Y LTYE EL + E E E+K +SE R R +GAID E
Sbjct: 366 YRLTYEEVNELFDGSKEIEEKYPDVAWMLFEMKTISEKLRER---RFDEGAIDFEFDEPV 422
Query: 354 IKVANPEDPEPIINLYVEDQA-DPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
+ + + PE VE +A A +L+ E M+L +A + ++ YR Q +
Sbjct: 423 VVLDDQGKPES-----VEKRARGSAEKLIEEFMLLANRVVAEHHYNLDMPFIYRVHEQPD 477
Query: 413 ID-VSAFAHL----------PEG----PVR-----------------SSAIVKIMRAAAI 440
+ VS F PEG P+ S+ +++ M+ A
Sbjct: 478 DEKVSTFREFASKFGYYLPKPEGEEIYPIEFQKVLEEAKDTREERAISTMMLRSMKQARY 537
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY DL+ H
Sbjct: 538 -AAESLGHFGLSFQYYTHFTSPIRRYPDLVVH 568
>gi|313204897|ref|YP_004043554.1| RNAse r [Paludibacter propionicigenes WB4]
gi|312444213|gb|ADQ80569.1| RNAse R [Paludibacter propionicigenes WB4]
Length = 712
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 170/382 (44%), Gaps = 48/382 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + R D+ + + +D +A + DDALS +L DG +V +H+AD T Y+ P S+ ++
Sbjct: 253 DEVAKRIDMRSITTFTVDPRDAKDFDDALSLRKLDDGLWEVGVHIADVTHYVRPDSIIEQ 312
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDN 297
+ +R TSV+L T PM PE L+ SLR E + +T SV+ ++ I Y +
Sbjct: 313 EGRERATSVYLVDRTIPMLPEHLSNGICSLRPDE--DKLTYSVIFKMNDKAEIQHYKIAK 370
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++ + TYE A ++ E + E+ + A + + R + GAI +E R ++
Sbjct: 371 TVTRSNRRFTYEEAQAIIETGEGEYKDEILTMDRLAKILRKKRFENGAIAFDRVEVRFEI 430
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--------------------- 395
P ++++ ++Q D + +++ E M+L + +AT+
Sbjct: 431 DEKGKP---VSVFFKEQKD-SNKMIEEFMLLANKTVATHIGKPGKGQKAKTFVYRIHDVP 486
Query: 396 --GSFNNLA---------LPYRGQPQSNIDVSAFAHLPE--GPVRSSAIVKIM---RAAA 439
NN A L G+ Q+ I S A L E G + I + A A
Sbjct: 487 NPDKLNNFAVFIKRFGYNLKTSGK-QTAISSSINALLDEVQGKKEQNLIETLAIRSMAKA 545
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
I + H L Y FTSPIRRY D++ H ++ G +A + E +
Sbjct: 546 IYSTSNMGHYGLAFDFYTHFTSPIRRYPDMMVHRLLEKYADG-GRSVNASEWEEYCEHSS 604
Query: 500 MQTRIARRLSNTSLRYWIIEFL 521
++A S++Y +EF+
Sbjct: 605 NMEQLASNAERASIKYKQVEFM 626
>gi|421751218|ref|ZP_16188272.1| ribonuclease R [Francisella tularensis subsp. tularensis AS_713]
gi|424673939|ref|ZP_18110867.1| ribonuclease R [Francisella tularensis subsp. tularensis 70001275]
gi|409088527|gb|EKM88593.1| ribonuclease R [Francisella tularensis subsp. tularensis AS_713]
gi|417435482|gb|EKT90383.1| ribonuclease R [Francisella tularensis subsp. tularensis 70001275]
Length = 750
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 150/348 (43%), Gaps = 47/348 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A R + G K+YI +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHRTKSGSWKLYIAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
M A G L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|300772611|ref|ZP_07082481.1| ribonuclease R [Sphingobacterium spiritivorum ATCC 33861]
gi|300760914|gb|EFK57740.1| ribonuclease R [Sphingobacterium spiritivorum ATCC 33861]
Length = 709
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 114/453 (25%), Positives = 194/453 (42%), Gaps = 57/453 (12%)
Query: 120 KDSDRVLLAVAQRPDGKKNWM--VYDQNGASCSIKPQQVTFVV---------PGVEKFDH 168
KD ++V++++ + P G KN + V D G + + P VEK +
Sbjct: 182 KDGEKVVVSITEWPKGSKNPVGRVKDVLGKKGENNTEMNAILADYGFPLSFPPEVEK-EA 240
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
S + E + R+D + + ID +A + DDA+S +L +G ++ +H+AD +
Sbjct: 241 NSFSAVIDNTE--IRKRRDFRTIPTFTIDPADAKDFDDAISFQQLPNGHYEIGVHIADVS 298
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
+++P + DK+A +R TSV+L PM PE+L+ + SLR E + L
Sbjct: 299 HFVKPDTALDKEAFERATSVYLVDRVIPMLPERLSNDLCSLRPNEDRLCFSAVFELDDKA 358
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDT 347
+I + ++I +YE A E++ + E+ L+E A + + + + GAI
Sbjct: 359 NIHDQWFGRTVIHSDRRFSYEEAQEVIENKTGDFTTEILKLNELAYILREKKFKNGAISF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLA 402
+ E +K E+ +P +Y + + D A +L+ + M+L +A Y N L
Sbjct: 419 ESEE--VKFTLDENGKPT-GVYTKVRKD-AHKLIEDFMLLANRKVAEYIGKQGKGKNKLT 474
Query: 403 LPYRGQ----PQSNIDVSAFAHL---------------------------PEGPVRSSAI 431
YR P++ S FA E + +S
Sbjct: 475 FVYRFHDLPNPETLTTFSQFASRFGHKLTIRSDKETAKSLNALMTKIEGSKEQNLLTSLA 534
Query: 432 VKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQL 491
V+ M A A+ K H L Y FTSPIRRY D++ H ++ L G +A
Sbjct: 535 VRSM-AKAVYTTKNTSHYGLAFDYYTHFTSPIRRYPDVMVHRLLQFYLDG-GQKVNAEHY 592
Query: 492 EGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQ 524
E M+ + + A S++Y EFL+ Q
Sbjct: 593 EKMSEHSSQMEKKAAEAERASIKYKQAEFLQDQ 625
>gi|160902437|ref|YP_001568018.1| ribonuclease R [Petrotoga mobilis SJ95]
gi|160360081|gb|ABX31695.1| ribonuclease R [Petrotoga mobilis SJ95]
Length = 737
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 157/344 (45%), Gaps = 47/344 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E+ + RKD ++ ID D A + DDA+ +L +G + +H+AD + Y++ S
Sbjct: 237 SENEINGRKDFRKETIFTIDGDTAKDFDDAVGIKKLDNGNYLLGVHIADVSHYVKSNSAL 296
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A KRGTSV+L PM P +L+ SL +GE + +T+S+++ D G++ +
Sbjct: 297 DREAYKRGTSVYLIDTVIPMLPFELSNWICSLVEGE--DRLTMSLLMEIDPYGNLVNSKI 354
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEA---------ELKILSEAAALRLQWRLQQGA-I 345
N +I+ LTY ELL N EE EL+++ E L + R ++G+ I
Sbjct: 355 YNGVIRSAKRLTYRKVNELLSDNCSEEVKKEIEFLKPELEMMRELMELLSEKRKERGSII 414
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
D + E + D + + + + + +++ E M+L E +A+Y L Y
Sbjct: 415 DIESNEVHFEF----DEKGYVKDIIPVERGLSEKMIEEFMVLANETVASYFDVQGLPFIY 470
Query: 406 RGQPQSNIDV-----------SAFAHLPEG----------------PVRSSAIVKIMRAA 438
R + DV P+ P+ + + ++R+
Sbjct: 471 RIHENPDPDVLLQLRNYLDMLGINVKFPQNIHPKVLQEILEKTKNHPLSKNIQMMLVRSM 530
Query: 439 --AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
A+ + V H L Y FTSPIRRY DL+ H +K ++
Sbjct: 531 KRALYSEENVGHFGLASSSYTHFTSPIRRYPDLVVHRLLKEFIK 574
>gi|406593176|ref|YP_006740355.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci NJ1]
gi|405789048|gb|AFS27790.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci NJ1]
Length = 681
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 108/415 (26%), Positives = 180/415 (43%), Gaps = 58/415 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +NL +E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEP---VNL-IETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 531
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+LE + + Q RIA + ++ +FL QP + Y+A I+
Sbjct: 532 ----TRLEHIVRACSTQERIAAKSEFAFETLKKNRFLHKFLTEQP-DSIYQAYII 581
>gi|254292038|ref|ZP_04962816.1| exoribonuclease II [Vibrio cholerae AM-19226]
gi|150422063|gb|EDN14032.1| exoribonuclease II [Vibrio cholerae AM-19226]
Length = 678
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|417934996|ref|ZP_12578316.1| ribonuclease R [Streptococcus mitis bv. 2 str. F0392]
gi|340771566|gb|EGR94081.1| ribonuclease R [Streptococcus mitis bv. 2 str. F0392]
Length = 784
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNMELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPGIELMAKLHERLENMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDI----VLRQRGIAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|299536243|ref|ZP_07049556.1| ribonuclease R [Lysinibacillus fusiformis ZC1]
gi|298728229|gb|EFI68791.1| ribonuclease R [Lysinibacillus fusiformis ZC1]
Length = 841
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 159/341 (46%), Gaps = 44/341 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL H + ID +A +LDDA++ + DG K+ +H+AD + Y+ GS+
Sbjct: 243 TEADLVGRRDLRHETIVTIDGADAKDLDDAVTVTKNVDGTYKLGVHIADVSYYVTQGSVI 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R TSV+L PM P +L+ SL ++ +++ ++G++ + +
Sbjct: 303 DIEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDANGNVVAHEIFQ 362
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY+ ++L E E K ++E + + + R +GAID
Sbjct: 363 SVIKTTERMTYKDVYKILEEQDEALIERYEPLVPMFKNMAELSGILRRKREMRGAIDFDF 422
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--- 406
E+++ + N E I L + A +L+ + M+ E +A + + N+ YR
Sbjct: 423 KESKV-IVNEEGWPVDIELR---ERTVAEKLIEDFMLAANETVAEHFHWMNVPFLYRIHE 478
Query: 407 ---------------------------GQPQSNIDV-SAFAHLPEGPVRSSAIVKIMRAA 438
P++ DV A +PE PV S+ +++ M+ A
Sbjct: 479 DPKPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRSMQQA 538
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 539 KY-YPESLGHFGLSTDFYTHFTSPIRRYPDLVVHRLIRTYL 578
>gi|15601560|ref|NP_233191.1| exoribonuclease II [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121588067|ref|ZP_01677816.1| exoribonuclease II [Vibrio cholerae 2740-80]
gi|121730002|ref|ZP_01682417.1| exoribonuclease II [Vibrio cholerae V52]
gi|153819401|ref|ZP_01972068.1| exoribonuclease II [Vibrio cholerae NCTC 8457]
gi|153823795|ref|ZP_01976462.1| exoribonuclease II [Vibrio cholerae B33]
gi|227812371|ref|YP_002812381.1| exoribonuclease II [Vibrio cholerae M66-2]
gi|229506041|ref|ZP_04395550.1| exoribonuclease II [Vibrio cholerae BX 330286]
gi|229510103|ref|ZP_04399583.1| exoribonuclease II [Vibrio cholerae B33]
gi|229517767|ref|ZP_04407212.1| exoribonuclease II [Vibrio cholerae RC9]
gi|229528333|ref|ZP_04417724.1| exoribonuclease II [Vibrio cholerae 12129(1)]
gi|229605572|ref|YP_002876276.1| exoribonuclease II [Vibrio cholerae MJ-1236]
gi|254226976|ref|ZP_04920539.1| exoribonuclease II [Vibrio cholerae V51]
gi|254849962|ref|ZP_05239312.1| exoribonuclease II [Vibrio cholerae MO10]
gi|255746440|ref|ZP_05420387.1| exoribonuclease II [Vibrio cholera CIRS 101]
gi|262148975|ref|ZP_06028122.1| exoribonuclease II [Vibrio cholerae INDRE 91/1]
gi|298499595|ref|ZP_07009401.1| exoribonuclease II [Vibrio cholerae MAK 757]
gi|360037705|ref|YP_004939467.1| exoribonuclease II [Vibrio cholerae O1 str. 2010EL-1786]
gi|379744211|ref|YP_005335263.1| exoribonuclease II [Vibrio cholerae IEC224]
gi|417811755|ref|ZP_12458416.1| exoribonuclease II [Vibrio cholerae HC-49A2]
gi|417816942|ref|ZP_12463572.1| exoribonuclease II [Vibrio cholerae HCUF01]
gi|417819857|ref|ZP_12466472.1| exoribonuclease II [Vibrio cholerae HE39]
gi|418330363|ref|ZP_12941344.1| exoribonuclease II [Vibrio cholerae HC-06A1]
gi|418337841|ref|ZP_12946736.1| exoribonuclease II [Vibrio cholerae HC-23A1]
gi|418341897|ref|ZP_12948727.1| exoribonuclease II [Vibrio cholerae HC-28A1]
gi|418349515|ref|ZP_12954247.1| exoribonuclease II [Vibrio cholerae HC-43A1]
gi|418353535|ref|ZP_12956260.1| exoribonuclease II [Vibrio cholerae HC-61A1]
gi|419826237|ref|ZP_14349740.1| exoribonuclease II [Vibrio cholerae CP1033(6)]
gi|421317176|ref|ZP_15767746.1| exoribonuclease II [Vibrio cholerae CP1032(5)]
gi|421320179|ref|ZP_15770737.1| exoribonuclease II [Vibrio cholerae CP1038(11)]
gi|421324221|ref|ZP_15774748.1| exoribonuclease II [Vibrio cholerae CP1041(14)]
gi|421327192|ref|ZP_15777710.1| exoribonuclease II [Vibrio cholerae CP1042(15)]
gi|421332284|ref|ZP_15782763.1| exoribonuclease II [Vibrio cholerae CP1046(19)]
gi|421335922|ref|ZP_15786385.1| exoribonuclease II [Vibrio cholerae CP1048(21)]
gi|421339732|ref|ZP_15790166.1| exoribonuclease II [Vibrio cholerae HC-20A2]
gi|421346011|ref|ZP_15796395.1| exoribonuclease II [Vibrio cholerae HC-46A1]
gi|422889726|ref|ZP_16932195.1| exoribonuclease II [Vibrio cholerae HC-40A1]
gi|422898636|ref|ZP_16935925.1| exoribonuclease II [Vibrio cholerae HC-48A1]
gi|422904684|ref|ZP_16939576.1| exoribonuclease II [Vibrio cholerae HC-70A1]
gi|422915031|ref|ZP_16949480.1| exoribonuclease II [Vibrio cholerae HFU-02]
gi|422927692|ref|ZP_16960636.1| exoribonuclease II [Vibrio cholerae HC-38A1]
gi|423146763|ref|ZP_17134251.1| exoribonuclease II [Vibrio cholerae HC-19A1]
gi|423147753|ref|ZP_17135131.1| exoribonuclease II [Vibrio cholerae HC-21A1]
gi|423151540|ref|ZP_17138771.1| exoribonuclease II [Vibrio cholerae HC-22A1]
gi|423158166|ref|ZP_17145179.1| exoribonuclease II [Vibrio cholerae HC-32A1]
gi|423161968|ref|ZP_17148840.1| exoribonuclease II [Vibrio cholerae HC-33A2]
gi|423163058|ref|ZP_17149881.1| exoribonuclease II [Vibrio cholerae HC-48B2]
gi|423732923|ref|ZP_17706166.1| exoribonuclease II [Vibrio cholerae HC-17A1]
gi|423741887|ref|ZP_17710665.1| exoribonuclease II [Vibrio cholerae HC-50A2]
gi|423910318|ref|ZP_17728306.1| exoribonuclease II [Vibrio cholerae HC-62A1]
gi|423919388|ref|ZP_17729218.1| exoribonuclease II [Vibrio cholerae HC-77A1]
gi|423941343|ref|ZP_17732908.1| exoribonuclease II [Vibrio cholerae HE-40]
gi|423973095|ref|ZP_17736453.1| exoribonuclease II [Vibrio cholerae HE-46]
gi|424002002|ref|ZP_17745087.1| exoribonuclease II [Vibrio cholerae HC-17A2]
gi|424004243|ref|ZP_17747249.1| exoribonuclease II [Vibrio cholerae HC-37A1]
gi|424022174|ref|ZP_17761857.1| exoribonuclease II [Vibrio cholerae HC-62B1]
gi|424028958|ref|ZP_17768509.1| exoribonuclease II [Vibrio cholerae HC-69A1]
gi|424588444|ref|ZP_18027940.1| exoribonuclease II [Vibrio cholerae CP1030(3)]
gi|424593193|ref|ZP_18032552.1| exoribonuclease II [Vibrio cholerae CP1040(13)]
gi|424597122|ref|ZP_18036339.1| exoribonuclease II [Vibrio Cholerae CP1044(17)]
gi|424603946|ref|ZP_18042997.1| exoribonuclease II [Vibrio cholerae CP1047(20)]
gi|424604698|ref|ZP_18043685.1| exoribonuclease II [Vibrio cholerae CP1050(23)]
gi|424608525|ref|ZP_18047403.1| exoribonuclease II [Vibrio cholerae HC-39A1]
gi|424615298|ref|ZP_18054014.1| exoribonuclease II [Vibrio cholerae HC-41A1]
gi|424619147|ref|ZP_18057752.1| exoribonuclease II [Vibrio cholerae HC-42A1]
gi|424620064|ref|ZP_18058612.1| exoribonuclease II [Vibrio cholerae HC-47A1]
gi|424642689|ref|ZP_18080467.1| exoribonuclease II [Vibrio cholerae HC-56A2]
gi|424650805|ref|ZP_18088351.1| exoribonuclease II [Vibrio cholerae HC-57A2]
gi|424654586|ref|ZP_18091904.1| exoribonuclease II [Vibrio cholerae HC-81A2]
gi|429885421|ref|ZP_19367010.1| Exoribonuclease II [Vibrio cholerae PS15]
gi|440711548|ref|ZP_20892189.1| exoribonuclease II [Vibrio cholerae 4260B]
gi|443505550|ref|ZP_21072439.1| exoribonuclease II [Vibrio cholerae HC-64A1]
gi|443509458|ref|ZP_21076153.1| exoribonuclease II [Vibrio cholerae HC-65A1]
gi|443513287|ref|ZP_21079857.1| exoribonuclease II [Vibrio cholerae HC-67A1]
gi|443517122|ref|ZP_21083567.1| exoribonuclease II [Vibrio cholerae HC-68A1]
gi|443520774|ref|ZP_21087106.1| exoribonuclease II [Vibrio cholerae HC-71A1]
gi|443521685|ref|ZP_21087961.1| exoribonuclease II [Vibrio cholerae HC-72A2]
gi|443529709|ref|ZP_21095726.1| exoribonuclease II [Vibrio cholerae HC-7A1]
gi|443533399|ref|ZP_21099345.1| exoribonuclease II [Vibrio cholerae HC-80A1]
gi|443537076|ref|ZP_21102934.1| exoribonuclease II [Vibrio cholerae HC-81A1]
gi|449057860|ref|ZP_21736156.1| Exoribonuclease II [Vibrio cholerae O1 str. Inaba G4222]
gi|25453258|sp|Q9KLE1.1|RNB_VIBCH RecName: Full=Exoribonuclease 2; AltName: Full=Exoribonuclease II;
Short=RNase II; Short=Ribonuclease II
gi|254807231|sp|C3LW69.1|RNB_VIBCM RecName: Full=Exoribonuclease 2; AltName: Full=Exoribonuclease II;
Short=RNase II; Short=Ribonuclease II
gi|9658231|gb|AAF96703.1| exoribonuclease II [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121547663|gb|EAX57759.1| exoribonuclease II [Vibrio cholerae 2740-80]
gi|121628249|gb|EAX60765.1| exoribonuclease II [Vibrio cholerae V52]
gi|125620489|gb|EAZ48860.1| exoribonuclease II [Vibrio cholerae V51]
gi|126510047|gb|EAZ72641.1| exoribonuclease II [Vibrio cholerae NCTC 8457]
gi|126518683|gb|EAZ75906.1| exoribonuclease II [Vibrio cholerae B33]
gi|227011513|gb|ACP07724.1| exoribonuclease II [Vibrio cholerae M66-2]
gi|229334695|gb|EEO00181.1| exoribonuclease II [Vibrio cholerae 12129(1)]
gi|229345803|gb|EEO10776.1| exoribonuclease II [Vibrio cholerae RC9]
gi|229352548|gb|EEO17488.1| exoribonuclease II [Vibrio cholerae B33]
gi|229356392|gb|EEO21310.1| exoribonuclease II [Vibrio cholerae BX 330286]
gi|229372058|gb|ACQ62480.1| exoribonuclease II [Vibrio cholerae MJ-1236]
gi|254845667|gb|EET24081.1| exoribonuclease II [Vibrio cholerae MO10]
gi|255736194|gb|EET91592.1| exoribonuclease II [Vibrio cholera CIRS 101]
gi|262031253|gb|EEY49870.1| exoribonuclease II [Vibrio cholerae INDRE 91/1]
gi|297541576|gb|EFH77627.1| exoribonuclease II [Vibrio cholerae MAK 757]
gi|340040092|gb|EGR01065.1| exoribonuclease II [Vibrio cholerae HCUF01]
gi|340040715|gb|EGR01687.1| exoribonuclease II [Vibrio cholerae HE39]
gi|340044575|gb|EGR05523.1| exoribonuclease II [Vibrio cholerae HC-49A2]
gi|341627744|gb|EGS53042.1| exoribonuclease II [Vibrio cholerae HC-70A1]
gi|341629304|gb|EGS54469.1| exoribonuclease II [Vibrio cholerae HC-48A1]
gi|341629534|gb|EGS54686.1| exoribonuclease II [Vibrio cholerae HC-40A1]
gi|341632555|gb|EGS57420.1| exoribonuclease II [Vibrio cholerae HFU-02]
gi|341643217|gb|EGS67514.1| exoribonuclease II [Vibrio cholerae HC-38A1]
gi|356417846|gb|EHH71457.1| exoribonuclease II [Vibrio cholerae HC-19A1]
gi|356424074|gb|EHH77494.1| exoribonuclease II [Vibrio cholerae HC-06A1]
gi|356424756|gb|EHH78153.1| exoribonuclease II [Vibrio cholerae HC-21A1]
gi|356431225|gb|EHH84430.1| exoribonuclease II [Vibrio cholerae HC-23A1]
gi|356435651|gb|EHH88801.1| exoribonuclease II [Vibrio cholerae HC-32A1]
gi|356436735|gb|EHH89845.1| exoribonuclease II [Vibrio cholerae HC-22A1]
gi|356439787|gb|EHH92750.1| exoribonuclease II [Vibrio cholerae HC-28A1]
gi|356440798|gb|EHH93730.1| exoribonuclease II [Vibrio cholerae HC-33A2]
gi|356446377|gb|EHH99177.1| exoribonuclease II [Vibrio cholerae HC-43A1]
gi|356454600|gb|EHI07247.1| exoribonuclease II [Vibrio cholerae HC-61A1]
gi|356457237|gb|EHI09804.1| exoribonuclease II [Vibrio cholerae HC-48B2]
gi|356648859|gb|AET28913.1| exoribonuclease II [Vibrio cholerae O1 str. 2010EL-1786]
gi|378796805|gb|AFC60275.1| exoribonuclease II [Vibrio cholerae IEC224]
gi|395919634|gb|EJH30457.1| exoribonuclease II [Vibrio cholerae CP1032(5)]
gi|395922235|gb|EJH33054.1| exoribonuclease II [Vibrio cholerae CP1041(14)]
gi|395925067|gb|EJH35869.1| exoribonuclease II [Vibrio cholerae CP1038(11)]
gi|395931082|gb|EJH41828.1| exoribonuclease II [Vibrio cholerae CP1046(19)]
gi|395934117|gb|EJH44856.1| exoribonuclease II [Vibrio cholerae CP1042(15)]
gi|395935604|gb|EJH46339.1| exoribonuclease II [Vibrio cholerae CP1048(21)]
gi|395941291|gb|EJH51969.1| exoribonuclease II [Vibrio cholerae HC-20A2]
gi|395947538|gb|EJH58193.1| exoribonuclease II [Vibrio cholerae HC-46A1]
gi|395955101|gb|EJH65705.1| exoribonuclease II [Vibrio cholerae HC-42A1]
gi|395966597|gb|EJH76714.1| exoribonuclease II [Vibrio cholerae HC-57A2]
gi|395967298|gb|EJH77394.1| exoribonuclease II [Vibrio cholerae HC-56A2]
gi|395968493|gb|EJH78445.1| exoribonuclease II [Vibrio cholerae CP1030(3)]
gi|395969360|gb|EJH79242.1| exoribonuclease II [Vibrio cholerae CP1047(20)]
gi|395978784|gb|EJH88153.1| exoribonuclease II [Vibrio cholerae HC-47A1]
gi|408006420|gb|EKG44568.1| exoribonuclease II [Vibrio cholerae HC-41A1]
gi|408012420|gb|EKG50199.1| exoribonuclease II [Vibrio cholerae HC-39A1]
gi|408039737|gb|EKG76006.1| exoribonuclease II [Vibrio cholerae CP1040(13)]
gi|408046855|gb|EKG82519.1| exoribonuclease II [Vibrio Cholerae CP1044(17)]
gi|408048546|gb|EKG83952.1| exoribonuclease II [Vibrio cholerae CP1050(23)]
gi|408059273|gb|EKG94041.1| exoribonuclease II [Vibrio cholerae HC-81A2]
gi|408609027|gb|EKK82410.1| exoribonuclease II [Vibrio cholerae CP1033(6)]
gi|408616442|gb|EKK89596.1| exoribonuclease II [Vibrio cholerae HC-17A1]
gi|408646651|gb|EKL18234.1| exoribonuclease II [Vibrio cholerae HC-50A2]
gi|408649427|gb|EKL20740.1| exoribonuclease II [Vibrio cholerae HC-62A1]
gi|408661261|gb|EKL32246.1| exoribonuclease II [Vibrio cholerae HC-77A1]
gi|408662756|gb|EKL33662.1| exoribonuclease II [Vibrio cholerae HE-40]
gi|408666697|gb|EKL37475.1| exoribonuclease II [Vibrio cholerae HE-46]
gi|408847858|gb|EKL87916.1| exoribonuclease II [Vibrio cholerae HC-17A2]
gi|408850987|gb|EKL90927.1| exoribonuclease II [Vibrio cholerae HC-37A1]
gi|408872342|gb|EKM11562.1| exoribonuclease II [Vibrio cholerae HC-69A1]
gi|408876939|gb|EKM16043.1| exoribonuclease II [Vibrio cholerae HC-62B1]
gi|429227774|gb|EKY33756.1| Exoribonuclease II [Vibrio cholerae PS15]
gi|439973035|gb|ELP49278.1| exoribonuclease II [Vibrio cholerae 4260B]
gi|443429994|gb|ELS72615.1| exoribonuclease II [Vibrio cholerae HC-64A1]
gi|443433861|gb|ELS80073.1| exoribonuclease II [Vibrio cholerae HC-65A1]
gi|443437458|gb|ELS87241.1| exoribonuclease II [Vibrio cholerae HC-67A1]
gi|443441281|gb|ELS94649.1| exoribonuclease II [Vibrio cholerae HC-68A1]
gi|443445533|gb|ELT02253.1| exoribonuclease II [Vibrio cholerae HC-71A1]
gi|443452147|gb|ELT12375.1| exoribonuclease II [Vibrio cholerae HC-72A2]
gi|443459279|gb|ELT26673.1| exoribonuclease II [Vibrio cholerae HC-7A1]
gi|443463364|gb|ELT34369.1| exoribonuclease II [Vibrio cholerae HC-80A1]
gi|443467085|gb|ELT41741.1| exoribonuclease II [Vibrio cholerae HC-81A1]
gi|448262885|gb|EMB00132.1| Exoribonuclease II [Vibrio cholerae O1 str. Inaba G4222]
Length = 678
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|153830146|ref|ZP_01982813.1| exoribonuclease II [Vibrio cholerae 623-39]
gi|229522354|ref|ZP_04411770.1| exoribonuclease II [Vibrio cholerae TM 11079-80]
gi|419828552|ref|ZP_14352043.1| exoribonuclease II [Vibrio cholerae HC-1A2]
gi|419833475|ref|ZP_14356936.1| exoribonuclease II [Vibrio cholerae HC-61A2]
gi|419836531|ref|ZP_14359971.1| exoribonuclease II [Vibrio cholerae HC-46B1]
gi|421343605|ref|ZP_15794009.1| exoribonuclease II [Vibrio cholerae HC-43B1]
gi|421355786|ref|ZP_15806117.1| exoribonuclease II [Vibrio cholerae HE-45]
gi|422920215|ref|ZP_16953545.1| exoribonuclease II [Vibrio cholerae HC-02A1]
gi|423734952|ref|ZP_17708163.1| exoribonuclease II [Vibrio cholerae HC-41B1]
gi|423810535|ref|ZP_17714586.1| exoribonuclease II [Vibrio cholerae HC-55C2]
gi|423844429|ref|ZP_17718320.1| exoribonuclease II [Vibrio cholerae HC-59A1]
gi|423875353|ref|ZP_17721991.1| exoribonuclease II [Vibrio cholerae HC-60A1]
gi|423999833|ref|ZP_17742996.1| exoribonuclease II [Vibrio cholerae HC-02C1]
gi|424009339|ref|ZP_17752279.1| exoribonuclease II [Vibrio cholerae HC-44C1]
gi|424011665|ref|ZP_17754510.1| exoribonuclease II [Vibrio cholerae HC-55B2]
gi|424021493|ref|ZP_17761246.1| exoribonuclease II [Vibrio cholerae HC-59B1]
gi|424626902|ref|ZP_18065323.1| exoribonuclease II [Vibrio cholerae HC-50A1]
gi|424627794|ref|ZP_18066127.1| exoribonuclease II [Vibrio cholerae HC-51A1]
gi|424631594|ref|ZP_18069787.1| exoribonuclease II [Vibrio cholerae HC-52A1]
gi|424638509|ref|ZP_18076476.1| exoribonuclease II [Vibrio cholerae HC-55A1]
gi|424642313|ref|ZP_18080155.1| exoribonuclease II [Vibrio cholerae HC-56A1]
gi|424646920|ref|ZP_18084619.1| exoribonuclease II [Vibrio cholerae HC-57A1]
gi|443525639|ref|ZP_21091796.1| exoribonuclease II [Vibrio cholerae HC-78A1]
gi|148874364|gb|EDL72499.1| exoribonuclease II [Vibrio cholerae 623-39]
gi|229340339|gb|EEO05345.1| exoribonuclease II [Vibrio cholerae TM 11079-80]
gi|341631629|gb|EGS56513.1| exoribonuclease II [Vibrio cholerae HC-02A1]
gi|395942172|gb|EJH52849.1| exoribonuclease II [Vibrio cholerae HC-43B1]
gi|395950456|gb|EJH61075.1| exoribonuclease II [Vibrio cholerae HE-45]
gi|408007903|gb|EKG45939.1| exoribonuclease II [Vibrio cholerae HC-50A1]
gi|408018751|gb|EKG56182.1| exoribonuclease II [Vibrio cholerae HC-55A1]
gi|408019566|gb|EKG56963.1| exoribonuclease II [Vibrio cholerae HC-56A1]
gi|408026496|gb|EKG63502.1| exoribonuclease II [Vibrio cholerae HC-52A1]
gi|408039215|gb|EKG75507.1| exoribonuclease II [Vibrio cholerae HC-57A1]
gi|408060260|gb|EKG94962.1| exoribonuclease II [Vibrio cholerae HC-51A1]
gi|408623625|gb|EKK96579.1| exoribonuclease II [Vibrio cholerae HC-1A2]
gi|408630405|gb|EKL03002.1| exoribonuclease II [Vibrio cholerae HC-41B1]
gi|408637668|gb|EKL09696.1| exoribonuclease II [Vibrio cholerae HC-55C2]
gi|408645623|gb|EKL17262.1| exoribonuclease II [Vibrio cholerae HC-60A1]
gi|408646744|gb|EKL18326.1| exoribonuclease II [Vibrio cholerae HC-59A1]
gi|408650799|gb|EKL22074.1| exoribonuclease II [Vibrio cholerae HC-61A2]
gi|408843933|gb|EKL84072.1| exoribonuclease II [Vibrio cholerae HC-02C1]
gi|408857081|gb|EKL96769.1| exoribonuclease II [Vibrio cholerae HC-46B1]
gi|408862445|gb|EKM01961.1| exoribonuclease II [Vibrio cholerae HC-59B1]
gi|408864363|gb|EKM03806.1| exoribonuclease II [Vibrio cholerae HC-44C1]
gi|408867369|gb|EKM06730.1| exoribonuclease II [Vibrio cholerae HC-55B2]
gi|443455971|gb|ELT19681.1| exoribonuclease II [Vibrio cholerae HC-78A1]
Length = 678
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|320333190|ref|YP_004169901.1| ribonuclease II [Deinococcus maricopensis DSM 21211]
gi|319754479|gb|ADV66236.1| ribonuclease II [Deinococcus maricopensis DSM 21211]
Length = 462
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 159/355 (44%), Gaps = 27/355 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL AID D + DDALS L DG ++++HVAD I P S +D +A R
Sbjct: 80 RTDLTHLTALAIDDDGNQDPDDALSLETLPDGTRRLWVHVADVAALIPPDSPADLEARAR 139
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G +++LP T PM P + +E + L + A+++S+ V + ++
Sbjct: 140 GATLYLPEGTVPMLPPAV-VERLGLGLQDTSPALSISIDFEGHWEPTVVDVVATTVR-VT 197
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE---D 361
LTY A L + L L+ A +R GA+ E ++ + +
Sbjct: 198 RLTYRDAQARLDAG---DPLLVDLAALAGAHRTYREDGGAVTITLPEVKVTAQDGDVHIT 254
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
P P + A +V E M+L G A A + + LPY Q + DV
Sbjct: 255 PLPPLT---------ARTIVQECMMLAGWAAAVWADDQEVPLPYAAQDAPHRDV------ 299
Query: 422 PEGPVRSSAIVKIMRAAAIDFRK-PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
G ++ + A F+ P H +GL Y Q TSP+RRY+DL+ H Q++A LR
Sbjct: 300 -RGDTLAAHWARRKTLARTRFQTAPAAHRGMGLDLYAQATSPMRRYLDLVVHQQLRAVLR 358
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALIL 535
G+ P + + + NM R S R+W ++ L P ER + A+I+
Sbjct: 359 GDE-PLAGRDIAARTAEANMSADAVRAAERASRRHWTLKHLANHP-ERVWDAVIV 411
>gi|153827319|ref|ZP_01979986.1| exoribonuclease II [Vibrio cholerae MZO-2]
gi|149738761|gb|EDM53103.1| exoribonuclease II [Vibrio cholerae MZO-2]
Length = 678
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADCQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|229514240|ref|ZP_04403701.1| exoribonuclease II [Vibrio cholerae TMA 21]
gi|229348220|gb|EEO13178.1| exoribonuclease II [Vibrio cholerae TMA 21]
Length = 678
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDKMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|153216461|ref|ZP_01950480.1| exoribonuclease II [Vibrio cholerae 1587]
gi|124114263|gb|EAY33083.1| exoribonuclease II [Vibrio cholerae 1587]
Length = 678
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWREAHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMTVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|389574677|ref|ZP_10164736.1| ribonuclease R [Bacillus sp. M 2-6]
gi|388425603|gb|EIL83429.1| ribonuclease R [Bacillus sp. M 2-6]
Length = 779
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 160/343 (46%), Gaps = 50/343 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + + ID +A +LDDA++ +L DG+ K+ +H+AD + Y+ S D
Sbjct: 242 EKDLEGRRDLRNETIVTIDGADAKDLDDAVTVQKLDDGKYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ +++ G + ++ + S
Sbjct: 302 QEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMIIDRSGKVVKHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAIDT 347
+IK T +TY ++L ++++ EL + + + A + R+++GA+D
Sbjct: 362 VIKTTERMTYSDVNKIL---VDQDEELLDKYEPLVPMFQEMEKLAEILRDKRMERGAVDF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V D E V + A +L+ E M++ E +A + + N+ YR
Sbjct: 419 DFKEAKVLV----DDEGAAKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 474
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ N + V+ F ++ PE V + +++ M+
Sbjct: 475 HEEPNPEKLQRFLEFVTTFGYIVKGTSTNIHPRALQSVLDAVRDQPEEVVIQTVMLRSMK 534
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A D + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 535 QAKYD-PESIGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>gi|242278928|ref|YP_002991057.1| ribonuclease II [Desulfovibrio salexigens DSM 2638]
gi|242121822|gb|ACS79518.1| ribonuclease II [Desulfovibrio salexigens DSM 2638]
Length = 687
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 169/371 (45%), Gaps = 16/371 (4%)
Query: 168 HKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
HKD + L KA + D L + +ID ++DDA + R +DG + I +A P
Sbjct: 272 HKDEIDRLVKAVET--KAGDPCPLPMRSIDSATTKDIDDAFNLKRREDGGYTLTIALARP 329
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ GS D+ M RGTSV+LP T M PE L + SL GEV A+ + L
Sbjct: 330 CMDWDFGSALDQAVMNRGTSVYLPEGTSHMMPEALGIGAFSLFSGEVRPALVTTFELDEH 389
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDT 347
G + + S +K T TY + ++L ++E L E + LQ R++ GAI
Sbjct: 390 GILQSVTPHISWVKITDNSTYLAVEQMLEEGSDDEMTLAF--ELSEKLLQERIKHGAIVI 447
Query: 348 ATLETRIKVAN-PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E + + P+ + +++ +++ A +++SE MIL + + N+ L YR
Sbjct: 448 RRPEPELSLQGWPQQTKVLMS--AKEKTTRADQIISEFMILANSGLGKFAEENDFPLLYR 505
Query: 407 GQPQSNIDV---SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
Q D+ S + + P V+ M +D P +H L + GY TSP+
Sbjct: 506 TQ-----DIALPSDLSGIVTEPHEIYMRVRQMVPPQMD-TVPKKHATLAVSGYSPITSPL 559
Query: 464 RRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRR 523
RRY D + Q+ L E P + +L+ +A + ++ + ++ RYW + +L +
Sbjct: 560 RRYADFINMAQLCHYLVEEQPKWDTDELKSLAENLQLRLQSVIKIQRFRPRYWKLLYLAQ 619
Query: 524 QPKERQYRALI 534
K + ++
Sbjct: 620 NRKGWHHAVVV 630
>gi|90020767|ref|YP_526594.1| RNAse R [Saccharophagus degradans 2-40]
gi|89950367|gb|ABD80382.1| RNAse R [Saccharophagus degradans 2-40]
Length = 646
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 164/370 (44%), Gaps = 48/370 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D T L ID ++DDA+ QDG+ + + +ADP +I PGS K A ++
Sbjct: 197 REDYTQLPFVTIDSPTTRDMDDAVHIAE-QDGKTVLTVAIADPASFIAPGSPLAKLAERQ 255
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
S ++ PM PE LA + SL +G+ A+ ++ L +DG++ +Y + ++I+ Y
Sbjct: 256 AQSTYMLGGIIPMLPESLANDCFSLVEGKKRPALVCTITLANDGAVEDYKFERAVIQSKY 315
Query: 305 MLTYESATELLH------LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
L Y+ E L L + + LSE A LR Q+R + I L+ I++
Sbjct: 316 KLNYQQVAEFLEGTNIEGLPADAADNISKLSELATLRYQYRTEHNLIGQDQLDYDIRL-- 373
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YRGQPQSNI-DV 415
D + I+ A +LV E M+L + + + N L L + G I +V
Sbjct: 374 --DDKGKISEIRPRSRTVAHKLVEEAMLLTNQCAGEFLAQNKLGLHTVHGGFRLDRIGEV 431
Query: 416 SAFAH----LPEGPVRS---------------------SAIVKIMRAAAI-DFRKPVRHG 449
+A PEG + A+ ++M++A + D P H
Sbjct: 432 NALLKEEQITPEGDITELEGNLQLIKALSANERQRNLIPALRRMMQSAELSDEAGP--HM 489
Query: 450 VLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP-PFSAGQLEGMASIVNMQTRIARRL 508
+G Y TSPIRRY DL H+ + + L G P F QLE + +T A R
Sbjct: 490 GMGFKHYATSTSPIRRYADLYNHWAIHSVLTGSKPYTFKPHQLERLK-----ETLQAGRQ 544
Query: 509 SNTSLRYWII 518
++ + W++
Sbjct: 545 ADREIYQWLL 554
>gi|424589188|ref|ZP_18028653.1| exoribonuclease II [Vibrio cholerae CP1037(10)]
gi|408038184|gb|EKG74538.1| exoribonuclease II [Vibrio cholerae CP1037(10)]
Length = 678
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|417823278|ref|ZP_12469876.1| exoribonuclease II [Vibrio cholerae HE48]
gi|340049408|gb|EGR10324.1| exoribonuclease II [Vibrio cholerae HE48]
Length = 678
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGNSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|424738484|ref|ZP_18166922.1| ribonuclease R [Lysinibacillus fusiformis ZB2]
gi|422947689|gb|EKU42081.1| ribonuclease R [Lysinibacillus fusiformis ZB2]
Length = 823
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 159/341 (46%), Gaps = 44/341 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL H + ID +A +LDDA++ + DG K+ +H+AD + Y+ GS+
Sbjct: 243 TEADLVGRRDLRHETIVTIDGADAKDLDDAVTVTKNVDGTYKLGVHIADVSYYVTQGSVI 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R TSV+L PM P +L+ SL ++ +++ ++G++ + +
Sbjct: 303 DIEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDANGNVVAHEIFQ 362
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY+ ++L E E K ++E + + + R +GAID
Sbjct: 363 SVIKTTERMTYKDVYKILEEQDEALIERYEPLVPMFKNMAELSGILRRKREMRGAIDFDF 422
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--- 406
E+++ + N E I L + A +L+ + M+ E +A + + N+ YR
Sbjct: 423 KESKV-IVNEEGWPVDIELR---ERTVAEKLIEDFMLAANETVAEHFHWMNVPFLYRIHE 478
Query: 407 ---------------------------GQPQSNIDV-SAFAHLPEGPVRSSAIVKIMRAA 438
P++ DV A +PE PV S+ +++ M+ A
Sbjct: 479 DPKPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRSMQQA 538
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 539 KY-YPESLGHFGLSTDFYTHFTSPIRRYPDLVVHRLIRTYL 578
>gi|421349336|ref|ZP_15799705.1| exoribonuclease II [Vibrio cholerae HE-25]
gi|395955953|gb|EJH66547.1| exoribonuclease II [Vibrio cholerae HE-25]
Length = 678
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|422920975|ref|ZP_16954233.1| exoribonuclease II [Vibrio cholerae BJG-01]
gi|341649770|gb|EGS73720.1| exoribonuclease II [Vibrio cholerae BJG-01]
Length = 678
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 187/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I+++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIADW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQSR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YFDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|163781625|ref|ZP_02176625.1| VacB protein (ribonuclease II family) [Hydrogenivirga sp.
128-5-R1-1]
gi|159882845|gb|EDP76349.1| VacB protein (ribonuclease II family) [Hydrogenivirga sp.
128-5-R1-1]
Length = 705
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 159/373 (42%), Gaps = 70/373 (18%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL + ID ++A + DDA+ R +G ++++H+AD + Y+ PG+ D++A KR
Sbjct: 244 RKDLRAQWCFTIDPEKARDFDDAVFVERTPEGNYRLFVHIADVSYYVRPGTALDEEAYKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G + +LP M PEKL+ SLR E A T +V G + Y V S+++
Sbjct: 304 GFTFYLPDRALHMLPEKLSANLCSLRPDEDRFAFTCEMVFDERGELLFYDVYESVVRSKA 363
Query: 305 MLTYESATELLHLN--LEEE-----AELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
LTY A ++ + LEE+ A L+++ + + + R ++G+ID E + V
Sbjct: 364 RLTYNEALSIIVGDPALEEKFPEVVAPLRMMEDLYRILSRRRWEKGSIDFDLPEAEVIVD 423
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YRGQPQSNIDV 415
+P ++ + A +++ + MI E +A + N P YR
Sbjct: 424 EYGEPTAVVPY----ERHIAHKIIEQFMISANETVALH--LENTGYPCLYR--------- 468
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKP-----------------------VRH---- 448
H P R +++I+ +KP VR
Sbjct: 469 ---VHEPPDEERVENLLEILNGLGYQVKKPKELTSKFFQKIIEDFEGKPEEQLVRFLTLR 525
Query: 449 ------------GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFS--AGQLE 492
G GL Y FTSPIRRY DL+ H +K+ LRGE + LE
Sbjct: 526 SMSRAKYSPHNLGHFGLASEHYAHFTSPIRRYPDLIVHRLLKSSLRGEEMDYDEVVAYLE 585
Query: 493 GMASIVNMQTRIA 505
++ Q R+A
Sbjct: 586 EAGEHLSAQERLA 598
>gi|51891477|ref|YP_074168.1| ribonulease R [Symbiobacterium thermophilum IAM 14863]
gi|51855166|dbj|BAD39324.1| ribonulease R [Symbiobacterium thermophilum IAM 14863]
Length = 834
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 52/342 (15%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
N R+DL + ID ++A +LDDA+S +RL R ++ +H+AD Y+ GS D++
Sbjct: 241 NEPGRRDLRDWTIVTIDGEDAKDLDDAVSVVRLAPDRWQLGVHIADVAAYVPEGSALDRE 300
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNS 298
A +RGTSV+L PM P +L+ SL G + +T+S V+ D G + Y++ S
Sbjct: 301 AYRRGTSVYLADRVVPMLPPRLSNGICSLNPG--VDRLTLSCVMEIDGRGEVRSYAIFPS 358
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKIL-------SEAAALRLQWRLQQGAIDTATLE 351
+I+ LTY +L+ A L+ L +E A+ + R+++GA+D E
Sbjct: 359 VIRTAARLTYTRVNAILNDEPGAAAGLEHLVPMCREMAELMAVLRERRMRRGALDFDLPE 418
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-GQPQ 410
++K+ P ++ + A R++ E M++ E +A + S L + YR +P
Sbjct: 419 AKVKLNEQGWPTDVLRV----DRGIAERIIEEFMLVANETVAEHCSTRELPVLYRVHEPP 474
Query: 411 SNIDVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAA 439
++ V+ + PE + S +++ M+ A
Sbjct: 475 ASDKVAGLSEFLQLFGYNLRMPRDGSVAPKDLQKVTLWAKDRPEENLIGSVLLRTMKQAR 534
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
R G GL Y FTSPIRRY DL+ H ++A L
Sbjct: 535 YSEE---RLGHFGLAAEYYCHFTSPIRRYPDLVVHRVLRAHL 573
>gi|242005176|ref|XP_002423448.1| Exosome complex exonuclease RRP44, putative [Pediculus humanus
corporis]
gi|212506526|gb|EEB10710.1| Exosome complex exonuclease RRP44, putative [Pediculus humanus
corporis]
Length = 957
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 110/431 (25%), Positives = 192/431 (44%), Gaps = 62/431 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED+L NR DL HL + ++D ++DDAL +L +G +V IH+AD T +I+PG+
Sbjct: 435 TEDDLKNRVDLRHLDICSVDPPGCTDIDDALHCRKLDNGNFEVGIHIADVTHFIKPGTAL 494
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A RGT+V+L M PE L+ SLR+ E A + V + G I
Sbjct: 495 DKEAALRGTTVYLVDKRIDMVPELLSSNLCSLRENEDRFAFSCIVEMTKKGKILNTKFHK 554
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATL 350
S+I+ +TYE A L ++++ + L+ L+ A + + RL GA+ A+
Sbjct: 555 SVIRSRKAMTYEEA----QLKIDDKKQNDNVTQSLRWLNNLAKIIKKKRLDNGALVLASP 610
Query: 351 ETRIKV-ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNNLALPYRG 407
E + + + DP + + D ++ E M+L ++A + F A+ R
Sbjct: 611 EVKFLMDSETHDPLDVEAKKIRDTNS----MIEEFMLLANISVAEKIFKDFPECAV-LRR 665
Query: 408 QPQ---------------SNIDVSA-----------FAHLPEGPVRSSAIVKIMRA---- 437
P+ N D+S A P P ++ ++KI+
Sbjct: 666 HPKPPLSNFEPLIKAGRVQNFDISVDTGKSLSVSLEKAVKPNNPYFNT-MLKILATRCMM 724
Query: 438 AAIDF------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPP---FSA 488
A+ F + H L P Y FTSPIRRY D++ H + + +S
Sbjct: 725 QAVYFSSGMFKEEDFFHYGLACPIYTHFTSPIRRYADIIVHRLLAVSVNADSTYPELLDK 784
Query: 489 GQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLV 548
+ + + + +N + ++A+ + S+ F R + ++ + ILR ++ +L+
Sbjct: 785 RKTQELCNNLNYRNQMAQYAARASVALHTHLFFRDKVQDEE--GYILR-VRKNALQILIP 841
Query: 549 EVGLQAAAWVS 559
+ GL+ +VS
Sbjct: 842 KYGLEGTLYVS 852
>gi|390600976|gb|EIN10370.1| RNB-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1141
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 160/357 (44%), Gaps = 53/357 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E L NR+DL +V+ ID D A +LDDALS DG +V +H+AD + +++P + D
Sbjct: 561 EHELKNRRDLRDQRVFTIDPDTAKDLDDALSLKANDDGTFQVGVHIADVSYFVKPNTALD 620
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+DA KR TSV+L PM P L+ E SL+ G+ A +V + DG + + +
Sbjct: 621 RDARKRATSVYLVQRAVPMLPPALSEEMCSLKPGQERLAFSVLFTVTKDGRVVDKWFGKT 680
Query: 299 IIKPTYMLTYESATELL-------------HLNLEEEAELKILSEAAALRLQWRLQQGAI 345
IK L Y +L H + E +LKIL + A L + R Q G++
Sbjct: 681 AIKSAAKLAYADVQNVLDGKPLGGVPVTPEHGASDLEHDLKILQDLAKLLKERRTQNGSM 740
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN--NLAL 403
++ R+K ++ P I+ ++ D A LV E M++ A+A + + + AL
Sbjct: 741 SLQSI--RLKFTLDKNGLP-IDCAPYERYD-AHSLVEEYMLMTNIAVAQHVAVHLPEQAL 796
Query: 404 PYRGQPQSNIDVSAFAH-LPEGPVR--SSAIVKIMRA----------------------- 437
R + AF EG V S IMR+
Sbjct: 797 LRRHDSPLERRLKAFQERAKEGGVEIDISTAGSIMRSFDAIKDPVARRTLEMRFFKCTQR 856
Query: 438 ------AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR-GESPPFS 487
+D K H L +P Y FTSPIRRY D+L H Q+++ L+ G P F+
Sbjct: 857 AKYFCTGMLDIAK-YGHYALNVPLYTHFTSPIRRYADILVHRQLESILQSGNDPKFA 912
>gi|433447186|ref|ZP_20410819.1| exoribonuclease R [Anoxybacillus flavithermus TNO-09.006]
gi|432000020|gb|ELK20926.1| exoribonuclease R [Anoxybacillus flavithermus TNO-09.006]
Length = 758
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 44/341 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L R+DL + + ID ++A +LDDA++ +L +G K+ +H+AD + Y+ GS
Sbjct: 236 SEEDLQGRRDLRNEMIVTIDGEDAKDLDDAVTVTKLANGNYKLGVHIADVSHYVTEGSPI 295
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 296 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINDRGEVVSHEIFQ 355
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I+ T +TY +L E E ++++E A + R+++GAID
Sbjct: 356 SVIRTTERMTYTDVNRILVDKDEALREKYAPLVPMFELMAELADILRNKRMKRGAIDFDF 415
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P +I + A RL+ E M+ E IA + + N+ YR
Sbjct: 416 KEAKVLVDENGKPYDVILR----ERSVAERLIEEFMLAANETIAEHFHWMNVPFIYRVHE 471
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 472 DPKPEKLQRFLEFITNFGYIVKGTGNQIHPRALQEVLEAVRGEPEEMVVSTVMLRSMKQA 531
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D +G L Y FTSPIRRY DL+ H ++ L
Sbjct: 532 RYDAESLGHYG-LSTEFYTHFTSPIRRYPDLIVHRLIRTYL 571
>gi|355628735|ref|ZP_09049957.1| ribonuclease R [Clostridium sp. 7_3_54FAA]
gi|354819625|gb|EHF04066.1| ribonuclease R [Clostridium sp. 7_3_54FAA]
Length = 772
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 171/373 (45%), Gaps = 43/373 (11%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ L RKDL L+ ID +EA +LDDA++ + Q G ++ +H+AD T Y+ S D+
Sbjct: 302 EELAGRKDLRELQTVTIDGEEAKDLDDAITIKKTQGG-YELGVHIADVTHYVREHSPLDE 360
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A+KRGTSV+L PM P KL+ SL QGE A++ + + G++ + + ++
Sbjct: 361 EALKRGTSVYLTDRVIPMLPHKLSNGICSLNQGEDRLALSCLMDIDKKGTVTGHEIAETV 420
Query: 300 IKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ +TY + ++ + E + +++ E A + + R +G+ID E
Sbjct: 421 IRVDRRMTYTAVNAVITEHDPEAMKEYEGFTGMFELMKELADILRKKRHSRGSIDFDFPE 480
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
++I + P + + D+ + A RL+ + M+L E +A + + YR
Sbjct: 481 SKIVLDEKGRP---VEIKPYDR-NAATRLIEDFMLLANETVAEDYFWQEIPFLYRTHDNP 536
Query: 412 NID--------VSAFAH---LPEGPVRSSAIVKIMRAA------AIDFRKPVR------- 447
+ + ++ F + +P G V + K++ A+ R +R
Sbjct: 537 DEEKMKKLGTFINNFGYTIRMPGGEVHPKELQKLLDKVEGTPEEALISRLTLRSMKQAKY 596
Query: 448 ------HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQ 501
H L Y FTSPIRRY DL H +K CL G+ E + V+++
Sbjct: 597 TTQNSGHFGLATKYYTHFTSPIRRYPDLQIHRIIKECLNGKMDGKRVSHYEKILPEVSVK 656
Query: 502 TRIARRLSNTSLR 514
T R ++ + R
Sbjct: 657 TSALERRADEAER 669
>gi|401683405|ref|ZP_10815291.1| ribonuclease R [Streptococcus sp. BS35b]
gi|400187483|gb|EJO21677.1| ribonuclease R [Streptococcus sp. BS35b]
Length = 784
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|418975353|ref|ZP_13523262.1| ribonuclease R [Streptococcus oralis SK1074]
gi|383348724|gb|EID26683.1| ribonuclease R [Streptococcus oralis SK1074]
Length = 784
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|386321357|ref|YP_006017519.1| Exoribonuclease R [Riemerella anatipestifer RA-GD]
gi|325335900|gb|ADZ12174.1| Exoribonuclease R [Riemerella anatipestifer RA-GD]
Length = 695
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 174/387 (44%), Gaps = 44/387 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ +L D
Sbjct: 230 DDEVKKRWDMRGICTFTIDPKDAKDFDDALSIRKLENGNWEIGVHIADVSHYVVSNTLLD 289
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +R TSV+L PM PE L+ E SLR E + L+ I + +
Sbjct: 290 QEAYQRATSVYLVDRVVPMLPEVLSNEVCSLRPNEDKYTFSAVFELNDKAEIKKQWFGRT 349
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+I TYE A E + + A E+ L A + + R+++GAI E R +
Sbjct: 350 VIHSDRRFTYEEAQERIETGKGDLADEILTLDRLAKILREERIRKGAITFDRSEVRFNL- 408
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP------YRGQPQS 411
E+ EP + +Y + D + L+ E M+L ++ + S N P YR
Sbjct: 409 -DENNEP-LGVYFKVSKD-SNHLIEEFMLLANRKVSEFISLNKKGSPTGKTFIYRVHDDP 465
Query: 412 NID--------VSAFAH---LPEGPVRSSAIVKIMRAA-------------------AID 441
+ V+ F + L + ++ +++++ A+
Sbjct: 466 DPTKLEALRDFVATFGYKMNLANSQKVAESMNELLKSVKGKGEENMIETLAMRSMSKAVY 525
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL-RGESPPFSAGQLEGMASIVNM 500
+P+ H LG Y FTSPIRRY DL+AH ++ L +G+SP + E + +
Sbjct: 526 STEPIGHYGLGFEYYTHFTSPIRRYPDLIAHRLLQHYLDQGKSP--DKAEYEEKSKHCSA 583
Query: 501 QTRIARRLSNTSLRYWIIEFLRRQPKE 527
R+A S+++ ++F+ + E
Sbjct: 584 MERLAADAERDSIKFMQVKFMEKHLGE 610
>gi|357236183|ref|ZP_09123526.1| ribonuclease R 1 family protein [Streptococcus criceti HS-6]
gi|356884165|gb|EHI74365.1| ribonuclease R 1 family protein [Streptococcus criceti HS-6]
Length = 801
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 155/341 (45%), Gaps = 51/341 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL + ID EA +LDDA+ +L +G ++ +H+AD + Y+ GS
Sbjct: 246 SESDFEGRLDLRDEITFTIDGKEAKDLDDAVHIKKLPNGNFELGVHIADVSYYVTEGSAL 305
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSV 295
DK+A+ RGTSV++ PM PE+L+ SL N +T S ++ + G + ++++
Sbjct: 306 DKEAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VNRLTQSAIMEINPQGKVVKHTI 363
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAA-------LRLQWRLQQGAIDTA 348
++IK T+ +TY+ ++L N + K + E+ + + + R+++GA+D
Sbjct: 364 TQTVIKTTFRMTYDDVNQMLAGNPAVIDQFKPIMESVSHMAELHKILVAMRIKRGALDFD 423
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
E +I V N P ++ V D+ A R++ M+ E +A + + L YR
Sbjct: 424 RPEAKILVDNKGLPTDVV---VRDRG-TAERMIESFMLAANECVAEHFAKRKLPFIYRIH 479
Query: 407 -----------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRA 437
GQ ++ A P V S +++ M+
Sbjct: 480 ETPKAEKLQKFMDYASLFGVPIYGTANSLGQKALQEFMNRIAGQPGHEVMSMMLLRSMQQ 539
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
A HG GL Y FTSPIRRY DLL H V+
Sbjct: 540 ARY---SENNHGHYGLAADYYTHFTSPIRRYPDLLVHRMVR 577
>gi|300857052|ref|YP_003782036.1| ribonuclease R [Clostridium ljungdahlii DSM 13528]
gi|300437167|gb|ADK16934.1| predicted ribonuclease R [Clostridium ljungdahlii DSM 13528]
Length = 712
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 151/338 (44%), Gaps = 49/338 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +L ID ++A +LDDA+S +L +G + +H+AD + Y+ + DK+A+KR
Sbjct: 244 RTDLRNLLTVTIDGEDAKDLDDAISISKLPNGNYSLGVHIADVSNYVREKNPLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P+KL+ SL A++ + + G + ++ V S+IK
Sbjct: 304 GTSVYLIDRVIPMLPKKLSNGICSLNPNTDRLALSCLMEIDKTGKVVQHKVVESVIKSNE 363
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L E E ++ E + + R+ +GAID E +I +
Sbjct: 364 RMTYTDVTKILRDKDAETMEKYSYLVDTFNLMEELCKILNKRRMTRGAIDFDFQECKIIL 423
Query: 357 AN---PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN- 412
+ P EP + + R++ E M++C E IA + + NL YR +
Sbjct: 424 DDLGVPVKIEPY-------ERGISNRIIEEFMLVCNETIAEHMFWTNLPFVYRIHEDPDE 476
Query: 413 ---IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAAAIDFR 443
+ + F H E V S+ +++ M+ A
Sbjct: 477 EKLMHFNEFVHNLGYVIKWGQEVHPKALQDIIEKVKGKKEEIVVSTLLLRSMKQARYS-S 535
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ V H L Y FTSPIRRY DL+ H +K + G
Sbjct: 536 ECVGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEFING 573
>gi|193216324|ref|YP_001997523.1| ribonuclease R [Chloroherpeton thalassium ATCC 35110]
gi|193089801|gb|ACF15076.1| ribonuclease R [Chloroherpeton thalassium ATCC 35110]
Length = 758
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 147/332 (44%), Gaps = 48/332 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL V+ ID +A + DDALS L G+ +V IH+AD + ++ GSL D +A +
Sbjct: 286 NRLDLRAKSVFTIDPFDAKDFDDALSIEDLGSGKYEVGIHIADVSHFVTEGSLLDIEAQR 345
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L PM P L+ SLR E A + V L+ +G++ +Y + ++I
Sbjct: 346 RSTSVYLVDRVIPMLPSMLSENVCSLRPKEDRLAYSALVQLNDEGNVLDYRFEKTLINSK 405
Query: 304 YMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A +++ E EL++L+ L R + G ID T E + ++ +P
Sbjct: 406 RRFTYEEAQKIISSGKGEFCYELQLLNSLGKLLSAKRFENGGIDFDTEEIKFRLDEKGEP 465
Query: 363 -EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS--FNNLALPYRG--------QPQS 411
E I + +E + RL+ E M+L +A + S + + Y +P+
Sbjct: 466 IELIKKIRLE-----SHRLIEEFMLLANRLVAMHISSKYQDKKHEYPSIFRVHDSPRPER 520
Query: 412 NIDVSAFAH------------LPEGPVRSSAIVKIMR-------------------AAAI 440
+ +S F L V S + ++ A AI
Sbjct: 521 IVQLSEFVTKLGFKLELKKNALNNPTVSSKGLRSLLEQVKGSNVEILVNEIALRSMAKAI 580
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K + H LG Y FTSPIRRY DL+ H
Sbjct: 581 YHEKNIGHFGLGFDYYTHFTSPIRRYPDLIVH 612
>gi|315613003|ref|ZP_07887914.1| ribonuclease R [Streptococcus sanguinis ATCC 49296]
gi|315315113|gb|EFU63154.1| ribonuclease R [Streptococcus sanguinis ATCC 49296]
Length = 784
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGIAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|218131623|ref|ZP_03460427.1| hypothetical protein BACEGG_03243 [Bacteroides eggerthii DSM 20697]
gi|217985926|gb|EEC52265.1| ribonuclease R [Bacteroides eggerthii DSM 20697]
Length = 719
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 164/376 (43%), Gaps = 45/376 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D ++ ID +A + DDALS +L+D +V +H+AD T Y+ S+ DK+A KR
Sbjct: 263 REDFRNITTLTIDPKDAKDFDDALSVRKLKDNLWEVGVHIADVTHYVTEDSIIDKEAEKR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G I + +++IK
Sbjct: 323 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAYSAIFEMTDKGEIKNSRIVHTVIKSDR 382
Query: 305 MLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
TYE A +++ + +EE LK+ + A LR + R GAI+ E + ++
Sbjct: 383 RFTYEEAQQIIETKEGDFKEEI-LKLDALAKILR-EKRFAAGAINFDRYEVKFEIDEKGK 440
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQSN 412
P I++Y ++ D A +LV E M+L +A S PYR P+
Sbjct: 441 P---ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKSKKPKVFPYRIHDLPDPEKL 496
Query: 413 IDVSAFAHLPEGPVRSSAIV--------------------KIMRAAAIDFRKPVRHGV-- 450
++S F +R+S ++ +I + R+ V
Sbjct: 497 DNLSQFIARFGYKLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSVHN 556
Query: 451 -----LGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIA 505
L Y FTSPIRRY D+L H + L S + E + + +IA
Sbjct: 557 IGHYGLSFDYYTHFTSPIRRYPDMLVHRLLTKYLDLGGRSVSEQKYEALCEHSSSMEQIA 616
Query: 506 RRLSNTSLRYWIIEFL 521
S++Y +E++
Sbjct: 617 ANAERASIKYKQVEYM 632
>gi|288817685|ref|YP_003432032.1| exoribonuclease R [Hydrogenobacter thermophilus TK-6]
gi|384128446|ref|YP_005511059.1| ribonuclease R [Hydrogenobacter thermophilus TK-6]
gi|288787084|dbj|BAI68831.1| exoribonuclease R [Hydrogenobacter thermophilus TK-6]
gi|308751283|gb|ADO44766.1| ribonuclease R [Hydrogenobacter thermophilus TK-6]
Length = 699
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 161/369 (43%), Gaps = 48/369 (13%)
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
K+ F + L NRKDL + ID + A + DDA++ +G ++++H+AD +
Sbjct: 224 KEAQKFRLHIKKELKNRKDLRDQICFTIDPERARDFDDAVAIQMTPEGHYRLWVHIADVS 283
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
+++ GS D++A KRG + +LP M PEKL+ + SL+ E T +V G
Sbjct: 284 YFVKEGSHIDEEAFKRGFTFYLPDRALHMLPEKLSSDLCSLKPNEDRLTFTCEMVFDQKG 343
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLN--LEEE-----AELKILSEAAALRLQWRLQ 341
++ Y + S+I+ LTY+ A L+ + LEE+ L+++ + + R +
Sbjct: 344 NLLNYDIYESVIRSKARLTYDEALRLIVGDPALEEKYPHLVEPLRLMENLYRILSKKRWE 403
Query: 342 QGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL 401
+G+ID E+ + V P ++ + A R++ MI E +A + +L
Sbjct: 404 KGSIDFDLPESEVIVDEFGQPVAVVPY----ERHIAHRIIEHFMISANETVAMH--LEHL 457
Query: 402 ALP--YRGQPQSNID-----VSAFAHLPEGPVRSSAIVKIMRAAAIDFR----------- 443
P YR + + + + A L R S K + DF
Sbjct: 458 GYPCLYRVHEKPDPEKVENLIEILAGLGYKVKRVSLEPKFFQKIIEDFEGRPEENLVRFL 517
Query: 444 ----------KPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQL 491
P G GL Y FTSPIRRY D++ H +K ++GE P+
Sbjct: 518 TLRSMKRAYYSPHNVGHFGLASEHYAHFTSPIRRYTDIIVHRILKKAIKGEDVPY----- 572
Query: 492 EGMASIVNM 500
E M S + M
Sbjct: 573 EQMVSYLEM 581
>gi|188994260|ref|YP_001928512.1| ribonuclease R [Porphyromonas gingivalis ATCC 33277]
gi|188593940|dbj|BAG32915.1| ribonuclease R [Porphyromonas gingivalis ATCC 33277]
Length = 731
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 167/383 (43%), Gaps = 46/383 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ L R+D + + ID +A + DDA+S L+D +V +H+AD + Y+ G +
Sbjct: 269 TEEELARREDFRSVLTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGII 328
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R TS++L T PM PE+L + SLR E A + ++ + + +Y + +
Sbjct: 329 DQEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICH 388
Query: 298 SIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+IK YE A ++ + EA LK+ A LR + R Q GAI E R +
Sbjct: 389 SVIKSDRRFAYEEAQAVIETGEGDCKEAILKLNELAQRLR-EERFQNGAIAFERKEVRFE 447
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------TYGS--------FNNL 401
+ P +I ++ A +L+ E M+L +A T G ++L
Sbjct: 448 IDEKGRPLGVI----VKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDL 503
Query: 402 ALPYRGQ---------------PQSNIDVSA--------FAHLPEGPVRSSAIVKIMRAA 438
P + + SN++VS + PE + S+ ++ M A
Sbjct: 504 PDPDKLETLSDFIRRFGYKLRTTGSNMEVSKSINSLLDNIQNKPEENLISTVAIRSM-AK 562
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
AI + H L Y FTSPIRRY DL+ H + L G S E
Sbjct: 563 AIYSTDNIGHYGLAFDFYTHFTSPIRRYPDLMVHRLLTKYLSGGS-SVDKNDYEEKCKHS 621
Query: 499 NMQTRIARRLSNTSLRYWIIEFL 521
+ ++A S++Y +EF+
Sbjct: 622 SAMEQLAASAERASIKYKQVEFM 644
>gi|387825111|ref|YP_005824582.1| 3'-to-5' exoribonuclease RNase R [Francisella cf. novicida 3523]
gi|332184577|gb|AEE26831.1| 3'-to-5' exoribonuclease RNase R [Francisella cf. novicida 3523]
Length = 765
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 156/350 (44%), Gaps = 49/350 (14%)
Query: 173 NFLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
++L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y
Sbjct: 247 HYLDNISDDVVVGNRVDLRNEHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNY 306
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G +
Sbjct: 307 VEKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKL 366
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQ 342
+ Y +++I LTY +LL +E EL L E + Q R ++
Sbjct: 367 SRYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQER 426
Query: 343 GAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA 402
GAID T+ET+I + + E II + D A RL+ E M++ A A + +
Sbjct: 427 GAIDFDTVETQIILNDYNHIESIIPRHRND----AHRLIEECMLVANVAAAKFTIKHKKT 482
Query: 403 LPYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKIMRAAAIDFRKPVR--- 447
P+R + D FA+ G V A+ +++ A+I R
Sbjct: 483 SPFRVHSEPKEDRMETLKKYLAKHGIHFAYGKNGKVTPKALAQML--ASIKDRPDYDDIQ 540
Query: 448 ------------------HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
H L Y FTSPIRRY DL+ H +K+ +
Sbjct: 541 MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|386741495|ref|YP_006214674.1| exoribonuclease II [Providencia stuartii MRSN 2154]
gi|384478188|gb|AFH91983.1| exoribonuclease II [Providencia stuartii MRSN 2154]
Length = 647
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 172/376 (45%), Gaps = 45/376 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R DLT L ID +++DDAL R DG +K+YI +ADPT YI+ GS D
Sbjct: 185 DDEGIERVDLTDLHFVTIDSASTEDMDDALYIERTADGHLKLYIAIADPTSYIKEGSELD 244
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDN 297
K A+ R + +LP PM P +L+ SLR E A+ + + DG++AE +
Sbjct: 245 KLALARAYTNYLPGFNIPMLPRELSDNLCSLRPNERRPALVCAATILDDGNLAEDIQFFS 304
Query: 298 SIIKPTYMLTYESATELLH-------LNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+ ++ L Y+ ++ L N ++ ++++L E A R QWR Q +
Sbjct: 305 AWVESKSKLVYDEVSDWLEKSGSWQPTNDTDQQQIELLKEMADKRHQWRQQNALVFKDRP 364
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT-------YGSFN---- 399
+ R + +D +I++ VE + A R+V E MI AT +G FN
Sbjct: 365 DYRFLL---DDKGNVIDIVVESRR-TANRIVEEAMITANLCAATQLKNTLGFGVFNVHMG 420
Query: 400 ----NLALPYRGQPQSNIDVSAFAHLP-EG-----------PVR--SSAIVKIMRAAAID 441
+ + + I+ +A + L EG P + S I + A +
Sbjct: 421 FEPLQIEQVVQTLKEHGIETTAESLLTLEGFRQLRRQLDAQPTQFLDSRIRRFQTFAEVK 480
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQ 501
+P H LG Y +TSPIR+Y D++ H +K+ + G+ P + E + SI +
Sbjct: 481 -GEPGPHFGLGFEAYATWTSPIRKYTDIVNHRLLKSVIAGK--PSTDKPTEEL-SIKLAE 536
Query: 502 TRIARRLSNTSLRYWI 517
R A R++ + W+
Sbjct: 537 RRRANRMAERDVGDWL 552
>gi|153813799|ref|ZP_01966467.1| hypothetical protein RUMTOR_00005 [Ruminococcus torques ATCC 27756]
gi|317501944|ref|ZP_07960128.1| ribonuclease R [Lachnospiraceae bacterium 8_1_57FAA]
gi|336440076|ref|ZP_08619675.1| ribonuclease R [Lachnospiraceae bacterium 1_1_57FAA]
gi|145848195|gb|EDK25113.1| ribonuclease R [Ruminococcus torques ATCC 27756]
gi|316896624|gb|EFV18711.1| ribonuclease R [Lachnospiraceae bacterium 8_1_57FAA]
gi|336014425|gb|EGN44274.1| ribonuclease R [Lachnospiraceae bacterium 1_1_57FAA]
Length = 735
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 162/342 (47%), Gaps = 45/342 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVY-IHVADPTKYIEPGSL 236
+E + RKDLT++K+ ID ++A +LDDA+S R DG V +H+AD T Y++ S
Sbjct: 272 SEADRAGRKDLTNVKMVTIDSEDAKDLDDAVSVER--DGENYVLGVHIADVTNYVQEKSA 329
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVD 296
D++A++RGTSV+L PM P L+ SL GE A++ + + G + + +
Sbjct: 330 LDREALERGTSVYLADRVIPMLPHILSNGVCSLNAGEERLALSCIMTISPKGEMISHEIT 389
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTAT 349
S+I ++Y + +L + + E + ++ E + L Q R ++GAID
Sbjct: 390 ESVICVDKRMSYNKVSAVLEQDEQALREYEGFVPMIWMMKELSELIRQKRGKRGAIDFDF 449
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
ET+I + ED +PI + Y +PA ++ + M++ E +A + + YR
Sbjct: 450 PETKIVL--DEDGKPIEVKPY---DRNPATEIIEDFMLMANETVAEEFFWREIPFLYRTH 504
Query: 409 PQSNID----VSAFA-----HLPEG-PVRSSAIVKIMRAA------------AIDFRKPV 446
+ D +SAF H+ G +R I K++ + K
Sbjct: 505 EAPDEDRIRQLSAFVNSFGYHIHVGNEIRPKEIQKLLEKVEGKPEEDLISRLTLRSMKQA 564
Query: 447 RH-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRG 481
R+ G GL Y FTSPIRRY DL H +K LRG
Sbjct: 565 RYTTENTGHFGLAAKYYTHFTSPIRRYPDLQIHRIIKENLRG 606
>gi|291540043|emb|CBL13154.1| RNAse R [Roseburia intestinalis XB6B4]
Length = 712
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 184/396 (46%), Gaps = 53/396 (13%)
Query: 130 AQRPDGKKNWMVYDQNGASCSIKPQQVTFVVP--GVEKFDHK--DISNFLQKAEDNLLNR 185
++P+GK ++ N I + +P EK H+ ++SN + A ++ R
Sbjct: 191 GRKPEGKVVEIIGHINDPGTDIMSIVKAYDLPVEFSEKIMHQVENVSNEVSTA--DMAGR 248
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
D + ID ++A +LDDA++ + D K+ +H+AD + Y++ S D +A+ RG
Sbjct: 249 MDFRDWQTVTIDGEDAKDLDDAITLTKEGDN-YKLGVHIADVSNYVQEHSALDVEALSRG 307
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKPT 303
TSV+L PM P KL+ SL GE N +T+S V+ D G++ ++++ S+IK
Sbjct: 308 TSVYLVDRVIPMLPHKLSNGICSLNAGE--NRLTLSCVMTIDAKGNVIDHTIAESVIKVD 365
Query: 304 YMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
++Y S ++L + E E +++ E AA+ + R+++G+ID ET+I
Sbjct: 366 RRMSYTSVKKILEDHDENEIREYEELVPMFELMQELAAILRKKRMKRGSIDFDFPETKIV 425
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
+ + P I + + A +++ + M++ E +A + L YR + +
Sbjct: 426 LDDKGKPVEIKPY----ERNVATKIIEDFMLIANETVAQDYFWQELPFVYRTHDNPDTEK 481
Query: 415 ---VSAF-------AHLPEGPVRSSAIVKIMRA------AAIDFRKPVR----------- 447
+S F H+ + V + K+++ A+ R +R
Sbjct: 482 IKKLSTFINNFGYSIHIGQDEVHPKELQKLLQKIDGTPEEALISRLTLRSMKQAKYTTMS 541
Query: 448 --HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H L P Y FTSPIRRY DL H +K LRG
Sbjct: 542 TGHFGLATPYYCHFTSPIRRYPDLQIHRIIKDNLRG 577
>gi|51245758|ref|YP_065642.1| ribonuclease R [Desulfotalea psychrophila LSv54]
gi|50876795|emb|CAG36635.1| related to ribonuclease R [Desulfotalea psychrophila LSv54]
Length = 721
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 185/399 (46%), Gaps = 51/399 (12%)
Query: 120 KDSDRVLLAVAQR--PDGKKNWMVYDQNGASCSIKPQQVTFVVPGV---EKFDHKDISNF 174
+ D V++ + Q PD + M+ + G+ S+K Q+ FVV +KF + +
Sbjct: 198 RHGDGVIVTLKQTATPDKVRQGMLLESFGSPDSVK-SQIRFVVEKSVLPDKFSGETYAEL 256
Query: 175 LQ-KAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEP 233
Q ED+ R DL +K ID D A + DDA+ + + ++Y+ +AD + +++
Sbjct: 257 EQMGGEDHDPKRVDLRDIKFVTIDGDTAKDFDDAVCVEK-RGVNFRLYVAIADVSHFVKV 315
Query: 234 GSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIA 291
GS D+DA +RGTSV+ P PM PEKL+ SL E + +T++ +L D G +
Sbjct: 316 GSALDRDAYERGTSVYFPGTVIPMLPEKLSNNLCSLVPDE--DRLTLTAILDIDRAGKLQ 373
Query: 292 EYSVDNSIIKPTYMLTYESATELL----HLNLEEEAELKILSEA---AALRLQWRLQQGA 344
+ S S+I+ + TY E+L ++ +E+A L +L EA A + + R +GA
Sbjct: 374 KKSFCRSLIRSQHRFTYTRVQEILDTPGSVSADEKAFLSMLQEAEKLARILKEKRAIRGA 433
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+ E+ I + D E + +A + +++ E M+ EA+A + + +
Sbjct: 434 LGFTMPESIILL----DSEGEVENVARSEAHFSQKIIEEFMLSANEAVAEFFTEQGCSAL 489
Query: 405 YRGQPQSNID----VSAFAH-----LP---EGPVRSSAIVKIMRAAAIDF---------- 442
YR + ++D + +AH LP P +++ + + +F
Sbjct: 490 YRIHEKPDVDRVKEFATYAHNLGMQLPPPDNSPAWFGRVIEESKGSEKEFVVNNLLLRSM 549
Query: 443 ------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
V H L Y FTSPIRRY DL+ H ++
Sbjct: 550 KQAKYSADNVGHFGLAATDYTHFTSPIRRYPDLMVHREL 588
>gi|331088240|ref|ZP_08337159.1| ribonuclease R [Lachnospiraceae bacterium 3_1_46FAA]
gi|330408484|gb|EGG87950.1| ribonuclease R [Lachnospiraceae bacterium 3_1_46FAA]
Length = 735
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 162/342 (47%), Gaps = 45/342 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVY-IHVADPTKYIEPGSL 236
+E + RKDLT++K+ ID ++A +LDDA+S R DG V +H+AD T Y++ S
Sbjct: 272 SEADRAGRKDLTNVKMVTIDSEDAKDLDDAVSVER--DGENYVLGVHIADVTNYVQEKSA 329
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVD 296
D++A++RGTSV+L PM P L+ SL GE A++ + + G + + +
Sbjct: 330 LDREALERGTSVYLADRVIPMLPHILSNGVCSLNAGEERLALSCIMTISPKGEMISHEIT 389
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTAT 349
S+I ++Y + +L + + E + ++ E + L Q R ++GAID
Sbjct: 390 ESVICVDKRMSYNKVSAVLEQDEQALREYEGFVPMIWMMKELSELIRQKRGKRGAIDFDF 449
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
ET+I + ED +PI + Y +PA ++ + M++ E +A + + YR
Sbjct: 450 PETKIVL--DEDGKPIEVKPY---DRNPATEIIEDFMLMANETVAEEFFWREIPFLYRTH 504
Query: 409 PQSNID----VSAFA-----HLPEG-PVRSSAIVKIMRAA------------AIDFRKPV 446
+ D +SAF H+ G +R I K++ + K
Sbjct: 505 EAPDEDRIRQLSAFVNSFGYHIHVGNEIRPKEIQKLLEKVEGKPEEDLISRLTLRSMKQA 564
Query: 447 RH-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRG 481
R+ G GL Y FTSPIRRY DL H +K LRG
Sbjct: 565 RYTTENTGHFGLAAKYYTHFTSPIRRYPDLQIHRIIKENLRG 606
>gi|220932409|ref|YP_002509317.1| ribonuclease R [Halothermothrix orenii H 168]
gi|219993719|gb|ACL70322.1| ribonuclease R [Halothermothrix orenii H 168]
Length = 706
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 188/405 (46%), Gaps = 51/405 (12%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ ++ +L R+DL + + ID +A +LDDA+S + D ++++ +H+AD + Y++
Sbjct: 234 LEISKGDLKGRRDLRAMPMVTIDGADAKDLDDAVSIEEVDDNQVRLGVHIADVSHYVKED 293
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSL--RQGEVCNAVTVSVVLHSDGSIAE 292
S D++A+KRGTS++L PM PE+L+ SL Q + +V ++ L + E
Sbjct: 294 SALDREALKRGTSIYLVDRVIPMLPERLSNGICSLNPNQDRLTMSVFITYQLEP-FKLME 352
Query: 293 YSVDNSIIKPTYMLTYESATELL-HLN---LEEEAE----LKILSEAAALRLQWRLQQGA 344
Y + S+IK Y LTY+ E+L H N +++ + LK++++ + R+ +G+
Sbjct: 353 YEIVPSVIKTNYRLTYDEVREILVHKNKAAIQKYRDFVPYLKLMNKLRKRLREERVARGS 412
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
ID E ++ + P IIN P +L+ E MI +A + +
Sbjct: 413 IDFDMPEVKVILNEDGKPVDIINRV---HGIPE-QLIEEFMIAANRVVAEDMYWRQIPFI 468
Query: 405 YRGQPQSN----IDVSAFAH-----------------------LPEGPVRSSAIVKIMRA 437
YR Q + D + F H L EG I +I+
Sbjct: 469 YRVHDQPDHGRMADFNEFIHNFGYHLKGVNNEIHPRELQELLQLVEGRPEERLITRILLR 528
Query: 438 A---AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL-RGESPPFSAGQLE- 492
+ A+ + + H L L Y FTSPIRRY DL+ H +K + +G P +LE
Sbjct: 529 SMKQAVYSDQNIGHFGLALDYYTHFTSPIRRYPDLMIHRIIKEVIKKGYLPARRQEELEE 588
Query: 493 ---GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
+A ++Q R A S+ +E+++ + E +Y +I
Sbjct: 589 KLFEVAEHSSLQERKAMEAERDSVDLKKVEYMKDKTGE-EYEGII 632
>gi|313206658|ref|YP_004045835.1| rnase r [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|383485963|ref|YP_005394875.1| rnase r [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|416112219|ref|ZP_11593184.1| Ribonuclease R [Riemerella anatipestifer RA-YM]
gi|442314133|ref|YP_007355436.1| hypothetical protein G148_0437 [Riemerella anatipestifer RA-CH-2]
gi|312445974|gb|ADQ82329.1| RNAse R [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|315022155|gb|EFT35184.1| Ribonuclease R [Riemerella anatipestifer RA-YM]
gi|380460648|gb|AFD56332.1| rnase r [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|441483056|gb|AGC39742.1| hypothetical protein G148_0437 [Riemerella anatipestifer RA-CH-2]
Length = 721
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 174/387 (44%), Gaps = 44/387 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ +L D
Sbjct: 256 DDEVKKRWDMRGICTFTIDPKDAKDFDDALSIRKLENGNWEIGVHIADVSHYVVSNTLLD 315
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +R TSV+L PM PE L+ E SLR E + L+ I + +
Sbjct: 316 QEAYQRATSVYLVDRVVPMLPEVLSNEVCSLRPNEDKYTFSAVFELNDKAEIKKQWFGRT 375
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+I TYE A E + + A E+ L A + + R+++GAI E R +
Sbjct: 376 VIHSDRRFTYEEAQERIETGKGDLADEILTLDRLAKILREERIRKGAITFDRSEVRFNL- 434
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP------YRGQPQS 411
E+ EP + +Y + D + L+ E M+L ++ + S N P YR
Sbjct: 435 -DENNEP-LGVYFKVSKD-SNHLIEEFMLLANRKVSEFISLNKKGSPTGKTFIYRVHDDP 491
Query: 412 NID--------VSAFAH---LPEGPVRSSAIVKIMRAA-------------------AID 441
+ V+ F + L + ++ +++++ A+
Sbjct: 492 DPTKLEALRDFVATFGYKMNLANSQKVAESMNELLKSVKGKGEENMIETLAMRSMSKAVY 551
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL-RGESPPFSAGQLEGMASIVNM 500
+P+ H LG Y FTSPIRRY DL+AH ++ L +G+SP + E + +
Sbjct: 552 STEPIGHYGLGFEYYTHFTSPIRRYPDLIAHRLLQHYLDQGKSP--DKAEYEEKSKHCSA 609
Query: 501 QTRIARRLSNTSLRYWIIEFLRRQPKE 527
R+A S+++ ++F+ + E
Sbjct: 610 MERLAADAERDSIKFMQVKFMEKHLGE 636
>gi|16801605|ref|NP_471873.1| hypothetical protein lin2543 [Listeria innocua Clip11262]
gi|16415065|emb|CAC97770.1| lin2543 [Listeria innocua Clip11262]
Length = 793
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 179/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS DK+
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDKE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEEVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|327398627|ref|YP_004339496.1| ribonuclease R [Hippea maritima DSM 10411]
gi|327181256|gb|AEA33437.1| ribonuclease R [Hippea maritima DSM 10411]
Length = 689
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 155/367 (42%), Gaps = 65/367 (17%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED R D +L ID ++A + DDA+ R Q G ++Y+H+AD + Y++ G
Sbjct: 235 TEDEFRKRTDFRNLPTITIDGEDARDFDDAIDVERTQTG-YRLYVHIADVSNYVKKGMSL 293
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A++RG SV+ P A PM P KL+ + SL E +V+V + + G I Y +
Sbjct: 294 DKEALQRGFSVYFPEAVIPMLPFKLSNDVCSLVPDEDRLSVSVIMEISKKGVIKSYDIKE 353
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETR 353
S+I+ +TY+ +L +++E LK I+ E A R ++G++D E +
Sbjct: 354 SVIRNKRRMTYKGVQGILDGQIKDEQWLKDRLVIMRELAKTLRSRRFKKGSLDLDIPEPK 413
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
+ V + + II + E + + ++ E M+ +A + S + R
Sbjct: 414 VIVED----DKIIEIK-EREHLFSHSIIEEFMLAANLCVADFLSRHYEKYIRR------- 461
Query: 414 DVSAFAHLPEGPVRSSAIVKIMRAAAIDFR--------------KPVR------------ 447
H PV+ S ++ +R + F K ++
Sbjct: 462 -----VHDDPDPVKLSVLIAFLRKMGVKFELQDEITSKELQKILKSIKDEKLKKIVSQLM 516
Query: 448 ---------------HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
H L Y FTSPIRRY DL+ H +KA L + F LE
Sbjct: 517 LRSLKRAEYSTQSKGHFALHFENYTHFTSPIRRYPDLVVHRMIKAVLEKKRESFD--NLE 574
Query: 493 GMASIVN 499
+ S +
Sbjct: 575 DITSTIK 581
>gi|407455068|ref|YP_006733959.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci GR9]
gi|405781611|gb|AFS20360.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci GR9]
Length = 681
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 179/415 (43%), Gaps = 58/415 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G + +Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLFDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 531
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+LE + + Q RIA + ++ +FL+ QP + Y+A I+
Sbjct: 532 ----TRLEHIVRACSTQERIAAKSEFAFETLKKNRFLHKFLKEQP-DSIYQAYII 581
>gi|301301279|ref|ZP_07207434.1| ribonuclease R [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851155|gb|EFK78884.1| ribonuclease R [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 799
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 159/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+ D + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIVDVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|404486882|ref|ZP_11022070.1| ribonuclease R [Barnesiella intestinihominis YIT 11860]
gi|404335936|gb|EJZ62402.1| ribonuclease R [Barnesiella intestinihominis YIT 11860]
Length = 712
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 169/384 (44%), Gaps = 48/384 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R+D + + ID +A + DDALS RL +G +V +H+AD + Y++PGS+
Sbjct: 250 TDEEIAAREDFRQVTTFTIDPKDAKDFDDALSIRRLSNGNWEVGVHIADVSYYVKPGSII 309
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS--IAEYSV 295
DK+A RGTSV+L PM PE+L E SLR E + +T S + +G+ + + +
Sbjct: 310 DKEAESRGTSVYLVDRVVPMLPERLCNEICSLRPDE--DKLTFSCIFELNGNAEVQKSHI 367
Query: 296 DNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++I+ YE A E++ + + E+ L++ A + R G+I+ E +
Sbjct: 368 ARTVIRSNRRFAYEEAQEVIETGEGDYKEEILALNDLAQKLRKRRFDNGSINFDRHEVKF 427
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYRGQP 409
+ P I +Y + + A +L+ E M+L +A + A YR
Sbjct: 428 DIDESGKP---IGVYFK-VSKEANKLIEEFMLLANRTVAEFIGKPKDGKKPKAFVYRVHD 483
Query: 410 QSNID-VSAFAHL-------------------------------PEGPVRSSAIVKIMRA 437
+ D +++FA PE + + ++ M A
Sbjct: 484 LPDPDKMASFAAFITRFGYKIKTEGSKADLSKGINSLLANVQGKPEENLVETIAIRAM-A 542
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASI 497
A+ + H L Y FTSPIRRY DL+ H ++ + G + LE
Sbjct: 543 KAVYTTVNIGHYGLSFDYYTHFTSPIRRYPDLMVHRLLERYMAG-GRSVNVQSLEDECKH 601
Query: 498 VNMQTRIARRLSNTSLRYWIIEFL 521
+ ++A S++Y +EF+
Sbjct: 602 ASDMEQLAANAERASIKYKQVEFM 625
>gi|338730719|ref|YP_004660111.1| RNAse R [Thermotoga thermarum DSM 5069]
gi|335365070|gb|AEH51015.1| RNAse R [Thermotoga thermarum DSM 5069]
Length = 723
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 164/360 (45%), Gaps = 52/360 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++L+ R D T V+ ID ++A + DDA+S +++D + + +H+AD + Y++ GS
Sbjct: 239 TKEDLIGRVDCTDEIVFTIDGEDAKDFDDAVSIKKVKDKYL-LSVHIADVSHYVKEGSAL 297
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A RGTSV+L PMFP KL+ + SL +G++ TV ++++ DG +Y V
Sbjct: 298 DKEAFLRGTSVYLLDTVIPMFPFKLSNDLCSLVEGKIRLTFTVQMLINKDGETLDYKVFP 357
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE----------LKILSEAAALRLQWRLQQGAI-D 346
S IK LTY + +EEA+ L ++ E + + ++R +GAI D
Sbjct: 358 SYIKSKKRLTYTLVNR--YFEGDEEAKKILGKEICRSLDLMLELSQILREYRKARGAILD 415
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ + I+ + V +A+ L+ E MI E +A F+ LP+
Sbjct: 416 IEGGEVKVILGKDYSVVDIVPV-VRGKAEI---LIEEFMIKANETVANI--FHEAGLPFV 469
Query: 407 GQPQSNIDVSAFAHLPE-----------------------------GPVRSSAIVKIMRA 437
+ D L E P+RSS ++R+
Sbjct: 470 YRVHEEPDPETLVQLKEYVEALGIGIKFPKKIDAAFLQKILEAVKNHPLRSSVERLLVRS 529
Query: 438 AAIDFRKPVRHGVLGLP--GYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
G GL Y FTSPIRRY DL+ H +K L+ + F+ Q++ +
Sbjct: 530 MKRALYSATNIGHFGLASFAYTHFTSPIRRYPDLVVHRLLKIYLK-QKGKFTPKQIQKFS 588
>gi|217963449|ref|YP_002349127.1| ribonuclease R [Listeria monocytogenes HCC23]
gi|386009167|ref|YP_005927445.1| ribonuclease R [Listeria monocytogenes L99]
gi|386027778|ref|YP_005948554.1| putative exoribonuclease R [Listeria monocytogenes M7]
gi|217332719|gb|ACK38513.1| ribonuclease R [Listeria monocytogenes HCC23]
gi|307571977|emb|CAR85156.1| ribonuclease R [Listeria monocytogenes L99]
gi|336024359|gb|AEH93496.1| putative exoribonuclease R [Listeria monocytogenes M7]
Length = 793
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L N E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|183599246|ref|ZP_02960739.1| hypothetical protein PROSTU_02705 [Providencia stuartii ATCC 25827]
gi|188021476|gb|EDU59516.1| exoribonuclease II [Providencia stuartii ATCC 25827]
Length = 647
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 172/376 (45%), Gaps = 45/376 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R DLT L ID +++DDAL R DG +K+YI +ADPT YI+ GS D
Sbjct: 185 DDEGIERVDLTDLHFVTIDSASTEDMDDALYIERTADGHLKLYIAIADPTSYIKEGSELD 244
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDN 297
K A+ R + +LP PM P +L+ SLR E A+ + + DG++AE +
Sbjct: 245 KLALARAYTNYLPGFNIPMLPRELSDNLCSLRPNERRPALVCAATILDDGNLAEDIQFFS 304
Query: 298 SIIKPTYMLTYESATELLH-------LNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+ ++ L Y+ ++ L N ++ ++++L E A R QWR Q +
Sbjct: 305 AWVESKSKLVYDEVSDWLEKSGSWQPTNDADQQQIELLKEMADKRHQWRQQNALVFKDRP 364
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT-------YGSFN---- 399
+ R + +D +I++ VE + A R+V E MI AT +G FN
Sbjct: 365 DYRFLL---DDKGNVIDIVVESRR-TANRIVEEAMITANLCAATQLKNTLGFGVFNVHMG 420
Query: 400 ----NLALPYRGQPQSNIDVSAFAHLP-EG-----------PVR--SSAIVKIMRAAAID 441
+ + + I+ +A + L EG P + S I + A +
Sbjct: 421 FEPLQIEQVVQTLKEHGIETTAESLLTLEGFRQLRRQLDAQPTQFLDSRIRRFQTFAEVK 480
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQ 501
+P H LG Y +TSPIR+Y D++ H +K+ + G+ P + E + SI +
Sbjct: 481 -GEPGPHFGLGFEAYATWTSPIRKYTDIVNHRLLKSVIAGK--PSTDKPTEEL-SIKLAE 536
Query: 502 TRIARRLSNTSLRYWI 517
R A R++ + W+
Sbjct: 537 RRRANRMAERDVGDWL 552
>gi|148982509|ref|ZP_01816786.1| exoribonuclease II [Vibrionales bacterium SWAT-3]
gi|145960441|gb|EDK25822.1| exoribonuclease II [Vibrionales bacterium SWAT-3]
Length = 601
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/416 (26%), Positives = 181/416 (43%), Gaps = 51/416 (12%)
Query: 113 GLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQN----GASCSIKPQQVTFVVPGVEKFDH 168
GL E K+ D V+ + Q P N + + A I P VT + +
Sbjct: 51 GLNPETLKEGDWVVAHIIQHPLKGDNGFLAQISEKITDADDKIAPWWVTLAQNDLPNSEP 110
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
+ I N+ Q +D L R D+TH+ ID + ++DDAL A + ++G ++ I +ADPT
Sbjct: 111 EGIDNW-QINDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIADPT 169
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
YI P DK A +RG +++LP PM P LA SL + EV A+ +V + DG
Sbjct: 170 AYISPDDAMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSKDG 229
Query: 289 SIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQWR 339
I + + + IK L Y++ ++ L E+ A + L E A R WR
Sbjct: 230 VIGDDINFFAANIKSHARLAYDNVSDWLETGTSEKWQPSEEIAAIVSDLHEFAQARSAWR 289
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAIATYG 396
+ + R +++ D ++ ++ D A +LV E MI +C +
Sbjct: 290 SANAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANKLVEESMISANICAGRVLKE- 344
Query: 397 SFN----NLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAI------------ 440
SFN N ++ + +++ + E P IV + AA+
Sbjct: 345 SFNQGVFNCHSGFKAEKVADV-LELVNPQAETPFTEEQIVSLEGFAALRRWLGSLDNNYY 403
Query: 441 DFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
D R +P H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 404 DNRIRKFQAYSEISNEPAPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILGKAP 459
>gi|422339538|ref|ZP_16420496.1| ribonuclease R [Fusobacterium nucleatum subsp. polymorphum F0401]
gi|355370968|gb|EHG18343.1| ribonuclease R [Fusobacterium nucleatum subsp. polymorphum F0401]
Length = 700
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 175/380 (46%), Gaps = 39/380 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A
Sbjct: 243 NRKDLTKLPIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKDTVLDLEARH 302
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+L PMFP++++ SL + E + + + G + Y V S+IK
Sbjct: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
Query: 304 YMLTYESATELLHLN---LEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ +TY+ +L + + E ++ LK + E + + + +G+ID E +KV
Sbjct: 363 HRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRAKKFTRGSIDFELPE--LKV 420
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------ 410
ED + + + D+ + +++ + MI E +A + LA YR +
Sbjct: 421 VLDEDNNKVEKVLLRDRGE-GEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKI 479
Query: 411 -----------------SNIDVSAFAHLPE--GPVRSSAIVK--IMRA--AAIDFRKPVR 447
N+ F + E +S +V I+RA A + +
Sbjct: 480 VVLNEILAKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIG 539
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
H L Y FTSPIRRY DL+ H + + + L+ +A ++ R+A +
Sbjct: 540 HFGLASSHYTHFTSPIRRYSDLMVHRVLFSSIDNSVKQLKLADLDEIAQHISKTERVAMK 599
Query: 508 LSNTSLRYWIIEFLRRQPKE 527
+ S+R ++E+++++ E
Sbjct: 600 AEDESVRIKLVEYMQKRVGE 619
>gi|336433102|ref|ZP_08612930.1| ribonuclease R [Lachnospiraceae bacterium 2_1_58FAA]
gi|336017311|gb|EGN47074.1| ribonuclease R [Lachnospiraceae bacterium 2_1_58FAA]
Length = 713
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 162/344 (47%), Gaps = 48/344 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL ++ ID ++A +LDDA+S +++G K+ +H+AD T Y++ S
Sbjct: 245 SEADMAGRMDLRDWQMVTIDGEDAKDLDDAVSLTEVENG-WKLGVHIADVTNYVQEKSAL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+KRGTSV+L PM P KL+ SL GE A++ + + G I ++ +
Sbjct: 304 DREALKRGTSVYLADRVIPMLPHKLSNGICSLNAGENRLALSCIMTVDKKGEIVDHVIAE 363
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
++I+ ++Y S ++L E+E + + ++E + L + R ++GAID
Sbjct: 364 TVIRVDQRMSYTSVAKILEAQDEQERQKYEKLVPMFEQMAEVSGLLRERRKKRGAIDFDF 423
Query: 350 LETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
ET++ + P + +P + + A +++ + M+ E +A + + YR
Sbjct: 424 PETKMILDEQGRPVELKPY-------ERNVATKMIEDFMLAANETVAEEYFWREIPFLYR 476
Query: 407 GQPQSNID----VSAFA-----HLPEG-PVRSSAIVKIMRAA------------AIDFRK 444
D +S F H+ G +R I K++ A+ K
Sbjct: 477 THEAPEEDKVKKLSTFINNFGYHIHMGNEIRPKEIQKLLEKVEGTPQEALISRLALRSMK 536
Query: 445 PVRH-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRG 481
R+ G GL Y FTSPIRRY DL H +K LRG
Sbjct: 537 QARYTPENAGHFGLAAQYYTHFTSPIRRYPDLQIHRIIKENLRG 580
>gi|323692434|ref|ZP_08106669.1| ribonuclease R [Clostridium symbiosum WAL-14673]
gi|323503486|gb|EGB19313.1| ribonuclease R [Clostridium symbiosum WAL-14673]
Length = 733
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 171/373 (45%), Gaps = 43/373 (11%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ L RKDL L+ ID +EA +LDDA++ + Q G ++ +H+AD T Y+ S D+
Sbjct: 263 EELAGRKDLRELQTVTIDGEEAKDLDDAITIKKTQGG-YELGVHIADVTHYVREHSPLDE 321
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A+KRGTSV+L PM P KL+ SL QGE A++ + + G++ + + ++
Sbjct: 322 EALKRGTSVYLTDRVIPMLPHKLSNGICSLNQGEDRLALSCLMDIDEKGTVTGHEIVETV 381
Query: 300 IKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ +TY + ++ + E + +++ E A + + R +G+ID E
Sbjct: 382 IRVDRRMTYTAVNAVITEHDPEAMKEYEGFTGMFELMKELADILRKKRHSRGSIDFDFPE 441
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
++I + P + + D+ + A RL+ + M+L E +A + + YR
Sbjct: 442 SKIVLDEKGRP---VEIKPYDR-NAATRLIEDFMLLANETVAEDYFWQEIPFLYRTHDNP 497
Query: 412 NID--------VSAFAH---LPEGPVRSSAIVKIMRAA------AIDFRKPVR------- 447
+ + ++ F + +P G V + K++ A+ R +R
Sbjct: 498 DEEKMKKLGTFINNFGYTIRMPGGEVHPKELQKLLDKVEGTPEEALISRLTLRSMKQAKY 557
Query: 448 ------HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQ 501
H L Y FTSPIRRY DL H +K CL G+ E + V+++
Sbjct: 558 TTQNSGHFGLATKYYTHFTSPIRRYPDLQIHRIIKECLNGKMDGKRVSHYEKILPEVSVK 617
Query: 502 TRIARRLSNTSLR 514
T R ++ + R
Sbjct: 618 TSALERRADEAER 630
>gi|290893673|ref|ZP_06556654.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|404408824|ref|YP_006691539.1| ribonuclease R [Listeria monocytogenes SLCC2376]
gi|290556746|gb|EFD90279.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|404242973|emb|CBY64373.1| ribonuclease R [Listeria monocytogenes SLCC2376]
Length = 793
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L N E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|310657965|ref|YP_003935686.1| ribonuclease R [[Clostridium] sticklandii]
gi|308824743|emb|CBH20781.1| ribonuclease R [[Clostridium] sticklandii]
Length = 706
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 172/383 (44%), Gaps = 54/383 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL + +Y ID +A +LDDA+S +L +G K+ +H+AD T Y+ G+ D +A+K
Sbjct: 246 SRLDLRNELIYTIDGSDAKDLDDAISIEKLNNGNYKLGVHIADVTHYVTEGAPLDDEALK 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIK 301
RGTSV+L PM P KL+ SL + +T+S ++ D G + + + ++I
Sbjct: 306 RGTSVYLVDTVIPMLPPKLSNGVCSLHPD--VDRLTLSCIMEIDEKGKVVSHEIKKTVIN 363
Query: 302 PTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETR 353
L YE +++L + EE + LK+ E A + R Q+GA+D E++
Sbjct: 364 SKARLVYEDVSDILENDNEELKQKYSYILDKLKLSEELAKILTARRSQRGAMDFDFPESK 423
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ----P 409
I + + II A R++ E M++ E +A + + YR P
Sbjct: 424 ILMDEAGNVTDIIKY----DRRIANRIIEEFMLIANETVAEQFFWAQIPFVYRVHENPDP 479
Query: 410 QSNID----VSAFAHLPEGPVR-----------------------SSAIVKIMRAAAIDF 442
+ D + AF + +G V S+ +++ ++ A
Sbjct: 480 EKIRDFVKFIGAFGYTLKGDVEEIHPKELQKLLGDIENTKEELVISTLMLRSLKQARY-- 537
Query: 443 RKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
P+ G GL Y FTSPIRRY DL H +K + +L+ + +
Sbjct: 538 -SPICTGHFGLAAKYYTHFTSPIRRYPDLQIHRIIKETIDESLNEKRLNRLKAIVEKASE 596
Query: 501 QTRIARRLSNTSLRYWIIEFLRR 523
Q+ I R ++ + R +E LR+
Sbjct: 597 QSSIREREADEAQRQ--VEDLRK 617
>gi|294501756|ref|YP_003565456.1| ribonuclease R [Bacillus megaterium QM B1551]
gi|295707106|ref|YP_003600181.1| ribonuclease R [Bacillus megaterium DSM 319]
gi|294351693|gb|ADE72022.1| ribonuclease R [Bacillus megaterium QM B1551]
gi|294804765|gb|ADF41831.1| ribonuclease R [Bacillus megaterium DSM 319]
Length = 780
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 158/342 (46%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ NR+DL + ID +A +LDDA++ L++G K+ +H+AD + Y++ GS D
Sbjct: 244 EKDIGNRRDLRDQVIVTIDGADAKDLDDAVTVTELENGNYKLGVHIADVSHYVKEGSPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
+A +RGTSV+L PM P +L+ SL N T+S + D G + ++ +
Sbjct: 304 VEAAERGTSVYLVDRVIPMIPHRLSNGICSLNPK--VNRFTLSCEMEIDPQGEVVKHEIF 361
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
S+IK T +TY ++L EE E + + + AA+ + R+ +GAID
Sbjct: 362 ESVIKTTERMTYSDVNKILVDKDEEVLERYEPIVPMFERMEKLAAILRKKRMDRGAIDFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V + P +I + A +L+ E M+ E +A + + N+ YR
Sbjct: 422 FKEAKVLVDDDGHPHDVILR----ERSVAEKLIEEFMLAANETVAEHFHWMNVPFIYRIH 477
Query: 409 PQSNID--------VSAFAH-----------------------LPEGPVRSSAIVKIMRA 437
+ + ++ F + PE V S+ +++ M+
Sbjct: 478 EDPDAEKLTRFLEFITNFGYTVKGTGNDIHPRALQDILEEVKGTPEEMVISTVMLRSMKQ 537
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A + + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 538 AKYE-AESLGHFGLSAEFYTHFTSPIRRYPDLIVHRLIRTYL 578
>gi|296126052|ref|YP_003633304.1| exoribonuclease II [Brachyspira murdochii DSM 12563]
gi|296017868|gb|ADG71105.1| Exoribonuclease II [Brachyspira murdochii DSM 12563]
Length = 581
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 147/324 (45%), Gaps = 31/324 (9%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +LK ID + + +LDDALS + D KVYIH++D + +IE S D +A R
Sbjct: 132 RIDLRNLKTITIDSESSKDLDDALSIEKEDDDHYKVYIHISDVSHFIELNSPLDIEARSR 191
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S +L Y MFPE L+ +SL + A+T+ V +++ G + V S+I
Sbjct: 192 GNSTYLIDEVYNMFPEILSNNVISLNENADRFAMTLLVHINNKGEVLSSEVFKSVINSDK 251
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQQGAIDTATLETRIKVANPEDP 362
L+Y+ A +++ + E L +L + A + L + ++ +++ +D
Sbjct: 252 KLSYDYAEDIIDKKCQAEDWLIVLIDNALIIKNLLYNRRKEGRGVEFDNQNVQIVLDDDG 311
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS-----------------FNNLALPY 405
P I Y E++ +M +V E+M+L IA S FNN +
Sbjct: 312 IP-IEFYAEEKK-QSMSIVEELMLLANSEIAKKLSKYDGVIYRYHGVPDEYRFNNFKILA 369
Query: 406 RGQ-------PQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV---RHGVLGLPG 455
+ P + D+ F +G + ++ ++ + + H LGL
Sbjct: 370 HNKGYDLKELPDKSYDIKEFVDRVKGKQEENLLIPVLLRSMTPSSYSIVNKSHFGLGLDY 429
Query: 456 YVQFTSPIRRYMDLLAHYQVKACL 479
Y FTSPIRRY DLL H VK +
Sbjct: 430 YTYFTSPIRRYADLLIHRIVKDTI 453
>gi|417936096|ref|ZP_12579413.1| ribonuclease R [Streptococcus infantis X]
gi|343403005|gb|EGV15510.1| ribonuclease R [Streptococcus infantis X]
Length = 780
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 164/354 (46%), Gaps = 48/354 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDLEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVRNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYQKIVPSIELMAKLHETLESMRIKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I+ + A R++ M++ E +A + S +L YR
Sbjct: 421 TNEAKILVDKKGKPVDIVLRH----RGTAERMIESFMLIANETVAEHYSKLDLPFIYRIH 476
Query: 407 -----GQPQSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F + + +A+ IMRA + V
Sbjct: 477 EEPKAEKVQKFIDYASSFGLRIYGTASEISQAALQDIMRAVEGEPYADVLSMMLLRSMQQ 536
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
HG GL Y FTSPIRRY DLL H ++ R + AG E
Sbjct: 537 ARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKE---VAGHFE 587
>gi|169826077|ref|YP_001696235.1| ribonuclease R [Lysinibacillus sphaericus C3-41]
gi|168990565|gb|ACA38105.1| Ribonuclease R [Lysinibacillus sphaericus C3-41]
Length = 829
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 161/345 (46%), Gaps = 52/345 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL H + ID +A +LDDA++ + DG K+ +H+AD + Y+ GS+
Sbjct: 249 TEADLVGRRDLRHETIVTIDGADAKDLDDAVTVTKNVDGTYKLGVHIADVSYYVTQGSVI 308
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R TSV+L PM P +L+ SL ++ +++ ++G++ + +
Sbjct: 309 DLEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDANGNVIAHEIFQ 368
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE------------LKILSEAAALRLQWRLQQGAI 345
S+IK T +TY+ ++ LEE+ E K ++E + + + R +GAI
Sbjct: 369 SVIKTTERMTYKDVYKI----LEEQDEALMKRYEPLVPMFKNMAELSGILRRKRESRGAI 424
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
D E+++ + N E I L + A +L+ + M+ E +A + + N+ Y
Sbjct: 425 DFDFKESKV-IVNEEGWPVDIELR---ERTVAEKLIEDFMLAANETVAEHFHWMNVPFLY 480
Query: 406 R------------------------------GQPQSNIDV-SAFAHLPEGPVRSSAIVKI 434
R P++ DV A +PE PV S+ +++
Sbjct: 481 RIHEDPKPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRS 540
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
M+ A + + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 541 MQQAKY-YPESLGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYL 584
>gi|138896635|ref|YP_001127088.1| ribonuclease R [Geobacillus thermodenitrificans NG80-2]
gi|196249336|ref|ZP_03148034.1| ribonuclease R [Geobacillus sp. G11MC16]
gi|134268148|gb|ABO68343.1| Ribonuclease R [Geobacillus thermodenitrificans NG80-2]
gi|196211093|gb|EDY05854.1| ribonuclease R [Geobacillus sp. G11MC16]
Length = 755
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 44/341 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R+DL + ID ++A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 240 TEKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + + G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPQGEVVSHDIFQ 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I+ T +TY ++L E E ++++E A + R+++GAID
Sbjct: 360 SVIRTTERMTYSDVNKILVDKDEALREKYAPLVPMFELMAELADILRTKRMKRGAIDFDF 419
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P + V + A RL+ E M++ E +A + + N+ YR
Sbjct: 420 KEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLVANETVAEHFHWLNVPFMYRVHE 475
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 476 DPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVISTVMLRSMKQA 535
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D +G L Y FTSPIRRY DL+ H ++ L
Sbjct: 536 RYDAESLGHYG-LSTEFYTHFTSPIRRYPDLIVHRLIRTYL 575
>gi|418973049|ref|ZP_13521089.1| ribonuclease R [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383350495|gb|EID28363.1| ribonuclease R [Streptococcus pseudopneumoniae ATCC BAA-960]
Length = 784
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 159/338 (47%), Gaps = 49/338 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL ++ ID +A +LDDA+ L++G +++ +H+AD + Y+ GS DK+A+
Sbjct: 249 GRLDLRDEIIFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSALDKEALN 308
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIK 301
R TSV++ PM PE+L+ SL + +T S ++ D G + Y++ ++IK
Sbjct: 309 RATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTITQTVIK 366
Query: 302 PTYMLTYESATELLHLNLEEEAELKILSEAAAL------RLQ-WRLQQGAIDTATLETRI 354
+Y +TY ++L + E+ E + + + L RL+ R+++GA++ T E +I
Sbjct: 367 TSYRMTYSDVNDILASDEEKRQEYQKIVPSIELMAKLHERLENMRVKRGALNLDTNEAKI 426
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQP- 409
V P I V Q A R++ M++ E +A + F+ L LP+ +P
Sbjct: 427 LVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYRIHEEPK 480
Query: 410 ----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------------- 446
Q ID S+F + + A+ IMRA + V
Sbjct: 481 AEKVQKFIDYASSFGIRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYS 540
Query: 447 --RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 541 EYNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|385809169|ref|YP_005845565.1| exoribonuclease R [Ignavibacterium album JCM 16511]
gi|383801217|gb|AFH48297.1| Exoribonuclease R [Ignavibacterium album JCM 16511]
Length = 698
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/386 (26%), Positives = 167/386 (43%), Gaps = 57/386 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
++L R D V ID ++A + DDALS + + G V IH+AD + Y++ S D+
Sbjct: 239 NDLKQRIDFRQKNVITIDPEDAKDFDDALSIEKNEKGNFIVGIHIADVSHYVDYDSYLDQ 298
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A +RG SV+L PM PE L+ SL E +V V + G I +Y + ++
Sbjct: 299 EAQQRGNSVYLVGRVIPMLPENLSNNICSLVPNEDRLTYSVIVEMTPRGRIVDYQIKKTV 358
Query: 300 IKPTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
I Y+ +++ + AE L + + A LR + R+++G+ D TLE + K+
Sbjct: 359 INSKRRFNYDEVQKIIETGEGDFAEDILNLDTLAKILR-RKRMKEGSFDFNTLEVKFKLD 417
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI---- 413
P + Y++ D M LV E M+L + +A + +ALP RG+ + +
Sbjct: 418 EYGIP---LEAYIKSMKDSNM-LVEEFMLLANKIVAQH-----IALPKRGEAKPFVYRVH 468
Query: 414 ----------------------------DVSAFAHL-------PEGPVRSSAIVKIMRAA 438
S F L E P+ + ++ M A
Sbjct: 469 DLPDQEKIMEFVRFVKSLGYQVSQNLIKKTSEFQKLLDQVKGKEEEPLINELAIRSMAKA 528
Query: 439 AIDFRKP--VRHGVLGLPGYVQFTSPIRRYMDLLAHYQV-KACLRGESPPFSAGQLEGMA 495
F P + H LG Y FTSPIRRY DLL H + K + P ++ +LE +
Sbjct: 529 ---FYSPTNIGHYGLGFKYYTHFTSPIRRYSDLLVHRLLFKYIENPQLPGYTLEELEEIC 585
Query: 496 SIVNMQTRIARRLSNTSLRYWIIEFL 521
++ R A S++ +E L
Sbjct: 586 EHISACERTAMEAERYSVKLKQVELL 611
>gi|421525701|ref|ZP_15972311.1| exoribonuclease II [Fusobacterium nucleatum ChDC F128]
gi|402258270|gb|EJU08742.1| exoribonuclease II [Fusobacterium nucleatum ChDC F128]
Length = 700
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 175/380 (46%), Gaps = 39/380 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT L + ID +A +LDDA+ +L++G K+ + +AD + Y++ ++ D +A
Sbjct: 243 NRKDLTKLPIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKDTVLDLEARH 302
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+L PMFP++++ SL + E + + + G + Y V S+IK
Sbjct: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
Query: 304 YMLTYESATELLHLN---LEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ +TY+ +L + + E ++ LK + E + + + +G+ID E +KV
Sbjct: 363 HRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRAKKFTRGSIDFELPE--LKV 420
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------ 410
ED + + + D+ + +++ + MI E +A + LA YR +
Sbjct: 421 VLDEDNNKVEKVLLRDRGE-GEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKI 479
Query: 411 -----------------SNIDVSAFAHLPE--GPVRSSAIVK--IMRA--AAIDFRKPVR 447
N+ F + E +S +V I+RA A + +
Sbjct: 480 VSLNEILAKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIG 539
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
H L Y FTSPIRRY DL+ H + + + L+ +A ++ R+A +
Sbjct: 540 HFGLSSSHYTHFTSPIRRYADLMVHRVLFSSIDNSVKQLKLADLDEIAQHISKTERVAMK 599
Query: 508 LSNTSLRYWIIEFLRRQPKE 527
+ S+R ++E+++++ E
Sbjct: 600 AEDESVRIKLVEYMQKRVGE 619
>gi|307546118|ref|YP_003898597.1| ribonuclease R [Halomonas elongata DSM 2581]
gi|307218142|emb|CBV43412.1| ribonuclease R [Halomonas elongata DSM 2581]
Length = 812
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 145/344 (42%), Gaps = 44/344 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
AED+ R DL + ID + A + DDA+ A + + G K+ + +AD + Y+ PGS
Sbjct: 260 AEDDKQQRIDLRDYPLVTIDDESAKDFDDAVCAWKTKSGSWKLLVAIADVSHYVRPGSPL 319
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+ RG SV+ P PM PE L+ SL A+ + + G+I+ Y
Sbjct: 320 DQEAISRGNSVYFPGQVVPMLPELLSNGLCSLNPDVDRLALVCEMNISKTGAISRYRFFE 379
Query: 298 SIIKPTYMLTYESATELLHLNLEEE-----------AELKILSEAAALRLQWRLQQGAID 346
++ + LTY + +L EE LK L L Q R ++GAID
Sbjct: 380 AVFRSHARLTYNKVSSILEDEGEEGDALREEYRELVPSLKNLHSLYKLLRQAREERGAID 439
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
T ET I + E I+ D A +++ E M+ A A + ++L YR
Sbjct: 440 FETTETAIVFNDERKIEKIVPRSRND----AHKIIEECMLAANVATARFLDKHDLPALYR 495
Query: 407 --------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIM-RAAA 439
G + D A +G + I +M R+ +
Sbjct: 496 IHERPSPERLDKLRLFLAELGLSLGGGDEPTPQDYRDLAEAIKGRDDADIIQTVMLRSMS 555
Query: 440 IDFRKPVRHGVLGL--PGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P G GL P Y FTSPIRRY DLL H +++ +RG
Sbjct: 556 QAVYSPQNEGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVIRG 599
>gi|383937844|ref|ZP_09991079.1| ribonuclease R [Streptococcus pseudopneumoniae SK674]
gi|383715274|gb|EID71245.1| ribonuclease R [Streptococcus pseudopneumoniae SK674]
Length = 784
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 159/337 (47%), Gaps = 49/337 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL ++ ID +A +LDDA+ L++G +++ +H+AD + Y+ GS DK+A+ R
Sbjct: 250 RLDLRDEIIFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSALDKEALNR 309
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
TSV++ PM PE+L+ SL + +T S ++ D G + Y++ ++IK
Sbjct: 310 ATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTITQTVIKT 367
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAAL------RLQ-WRLQQGAIDTATLETRIK 355
+Y +TY ++L + E+ E + + + L RL+ R+++GA++ T E +I
Sbjct: 368 SYRMTYSDVNDILASDEEKRQEYQKIVPSIELMAKLHERLENMRVKRGALNLDTNEAKIL 427
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQP-- 409
V P I V Q A R++ M++ E +A + F+ L LP+ +P
Sbjct: 428 VDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYRIHEEPKA 481
Query: 410 ---QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV---------------- 446
Q ID S+F + + A+ IMRA + V
Sbjct: 482 EKVQKFIDYASSFGIRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYSE 541
Query: 447 -RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 542 YNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|422413961|ref|ZP_16490920.1| ribonuclease R [Listeria innocua FSL S4-378]
gi|313617318|gb|EFR89753.1| ribonuclease R [Listeria innocua FSL S4-378]
Length = 793
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 179/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS DK+
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDKE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|406592066|ref|YP_006739246.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci CP3]
gi|405787938|gb|AFS26681.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci CP3]
Length = 681
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 180/415 (43%), Gaps = 58/415 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ +++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDKIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 531
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+LE + + Q RIA + ++ +FL+ QP + Y+A I+
Sbjct: 532 ----TRLEHIVRACSTQERIAAKSEFAFETLKKNRFLHKFLKEQP-DSIYQAYII 581
>gi|154503018|ref|ZP_02040078.1| hypothetical protein RUMGNA_00840 [Ruminococcus gnavus ATCC 29149]
gi|153796372|gb|EDN78792.1| ribonuclease R [Ruminococcus gnavus ATCC 29149]
Length = 713
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 162/344 (47%), Gaps = 48/344 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL ++ ID ++A +LDDA+S +++G K+ +H+AD T Y++ S
Sbjct: 245 SEADMAGRMDLRDWQMVTIDGEDAKDLDDAVSLTEVENG-WKLGVHIADVTNYVQEKSAL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+KRGTSV+L PM P KL+ SL GE A++ + + G I ++ +
Sbjct: 304 DREALKRGTSVYLADRVIPMLPHKLSNGICSLNAGENRLALSCIMTVDKKGEIVDHVIAE 363
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
++I+ ++Y S ++L E+E + + ++E + L + R ++GAID
Sbjct: 364 TVIRVDQRMSYTSVAKILEAQDEQERQKYEKLVPMFEQMAEVSGLLRERRKKRGAIDFDF 423
Query: 350 LETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
ET++ + P + +P + + A +++ + M+ E +A + + YR
Sbjct: 424 PETKMILDEQGRPVELKPY-------ERNVATKMIEDFMLAANETVAEEYFWREIPFLYR 476
Query: 407 GQPQSNID----VSAFA-----HLPEG-PVRSSAIVKIMRAA------------AIDFRK 444
D +S F H+ G +R I K++ A+ K
Sbjct: 477 THEAPEEDKVKKLSTFINNFGYHIHMGNEIRPKEIQKLLEKVEGTPQEALISRLALRSMK 536
Query: 445 PVRH-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRG 481
R+ G GL Y FTSPIRRY DL H +K LRG
Sbjct: 537 QARYTPENAGHFGLAAQYYTHFTSPIRRYPDLQIHRIIKENLRG 580
>gi|418962661|ref|ZP_13514515.1| ribonuclease R [Streptococcus anginosus subsp. whileyi CCUG 39159]
gi|383345196|gb|EID23329.1| ribonuclease R [Streptococcus anginosus subsp. whileyi CCUG 39159]
Length = 779
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 159/338 (47%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R +L + + ID +A +LDDA+ +L++G ++ +H+AD + Y++ GS
Sbjct: 242 SEKDFEGRLNLRNEITFTIDGADAKDLDDAVHIKKLKNGHFELGVHIADVSYYVKEGSEL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ + G + ++++
Sbjct: 302 DKEALNRATSVYVTDRVIPMLPERLSNGICSLNPN--VDRLTQSAIMEINQKGQVIKHTI 359
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK T+ +TY +++ + E++A K ++E + R ++GA++
Sbjct: 360 TQTVIKTTFRMTYSDVNDMIAGDEEKQAAFKAILPSVEAMAELHTILETMRFKRGALNFD 419
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 420 TKEAKILVNKTGRPVDI----VLRQRGLAERMIESFMLVANETVAEHFATLNLPFIYRIH 475
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S SA+ IM+A + V
Sbjct: 476 EEPKAEKVQKFIDYASTFGVRVYGTANSMSQSALQDIMKAVQGQPYEEVLSMMLLRSMQQ 535
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
+G GL Y FTSPIRRY DLL H V+
Sbjct: 536 ARYSEHNYGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 573
>gi|422910191|ref|ZP_16944832.1| exoribonuclease II [Vibrio cholerae HE-09]
gi|424659058|ref|ZP_18096309.1| exoribonuclease II [Vibrio cholerae HE-16]
gi|341633695|gb|EGS58484.1| exoribonuclease II [Vibrio cholerae HE-09]
gi|408053405|gb|EKG88420.1| exoribonuclease II [Vibrio cholerae HE-16]
Length = 678
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQEIS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|358467816|ref|ZP_09177491.1| ribonuclease R [Fusobacterium sp. oral taxon 370 str. F0437]
gi|357066791|gb|EHI76925.1| ribonuclease R [Fusobacterium sp. oral taxon 370 str. F0437]
Length = 705
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 168/375 (44%), Gaps = 39/375 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLTHL + ID +A +LDDA+ A +L++G K+ + +AD + Y++ S D +A R
Sbjct: 248 RKDLTHLSIITIDGADAKDLDDAVYAEKLKNGNYKLIVAIADVSYYVKKDSSLDLEARNR 307
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+L PMFP++++ SL + E + + G + Y V S+IK +
Sbjct: 308 GNSVYLVDRVLPMFPKEISNGICSLNEKEEKATFACEMEIDIKGDVVNYEVYKSVIKSVH 367
Query: 305 MLTYESATELLHLN---LEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+TY+ +L N +E+ ++ LK + E + + + +G+ID E +KV
Sbjct: 368 RMTYKDVNAILDGNEKLIEKYSDIHEMLKEMLELSKILRNKKYIRGSIDFELPE--LKVV 425
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------- 410
E+ + + + ++ + +++ + MI E +A + L YR +
Sbjct: 426 LDEENNKVEEVLLRERGE-GEKIIEDFMIAANETVAERIYWLELPSIYRTHEKPEREKVF 484
Query: 411 ----------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKP------VRH 448
N+ F + E + + + ++ + H
Sbjct: 485 KLNEMLAKFGYKIPNFDNLHPKQFQEIIERSKNKETSMLVHKTILTSLKQARYTVDDIGH 544
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRL 508
L Y FTSPIRRY DL+ H + + + F L+ +A ++ R+A +
Sbjct: 545 FGLASSHYTHFTSPIRRYSDLMVHRVLFSSINNSVKHFKITDLDEIAHHISKTERVAMKA 604
Query: 509 SNTSLRYWIIEFLRR 523
+ S+R ++E++++
Sbjct: 605 EDESVRIKLVEYMKK 619
>gi|89255960|ref|YP_513322.1| ribonuclease R [Francisella tularensis subsp. holarctica LVS]
gi|115314443|ref|YP_763166.1| ribonuclease R [Francisella tularensis subsp. holarctica OSU18]
gi|89143791|emb|CAJ78996.1| Ribonuclease R [Francisella tularensis subsp. holarctica LVS]
gi|115129342|gb|ABI82529.1| ribonuclease R [Francisella tularensis subsp. holarctica OSU18]
Length = 750
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 152/347 (43%), Gaps = 45/347 (12%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV 446
P+R + D AH G V A+ +++ R D R
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMT 543
Query: 447 --------------RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
H L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|389856237|ref|YP_006358480.1| exoribonuclease R [Streptococcus suis ST1]
gi|353739955|gb|AER20962.1| exoribonuclease R [Streptococcus suis ST1]
Length = 789
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 168/358 (46%), Gaps = 55/358 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DREAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ A K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNKEKLATYKAIVPSVELMVKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TTEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
M+ A +G LG Y FTSPIRRY DLL H V+ G +P A E
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMVREY--GHNPVEKAEHFE 590
>gi|291537514|emb|CBL10626.1| RNAse R [Roseburia intestinalis M50/1]
Length = 712
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 184/396 (46%), Gaps = 53/396 (13%)
Query: 130 AQRPDGKKNWMVYDQNGASCSIKPQQVTFVVP--GVEKFDHK--DISNFLQKAEDNLLNR 185
++P+GK ++ N I + +P EK H+ ++SN + A ++ R
Sbjct: 191 GRKPEGKVVEIIGHINDPGTDIMSIVKAYDLPVEFSEKIMHQVENVSNEVSTA--DMAGR 248
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
D + ID ++A +LDDA++ + D K+ +H+AD + Y++ S D +A+ RG
Sbjct: 249 MDFRDWQTVTIDGEDAKDLDDAITLTKEGDN-YKLGVHIADVSNYVQEHSALDVEALSRG 307
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKPT 303
TSV+L PM P KL+ SL GE N +T+S V+ D G++ ++++ S+IK
Sbjct: 308 TSVYLVDRVIPMLPHKLSNGICSLNAGE--NRLTLSCVMTIDTKGNVIDHTIAESVIKVD 365
Query: 304 YMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
++Y S ++L + E E +++ E AA+ + R+++G+ID ET+I
Sbjct: 366 RRMSYTSVKKILEDHDENEIGEYEELVPMFELMQELAAILRKKRMKRGSIDFDFPETKIV 425
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
+ + P I + + A +++ + M++ E +A + L YR + +
Sbjct: 426 LDDKGKPVEIKPY----ERNVATKIIEDFMLIANETVAQDYFWQELPFVYRTHDNPDTEK 481
Query: 415 ---VSAF-------AHLPEGPVRSSAIVKIMRA------AAIDFRKPVR----------- 447
+S F H+ + V + K+++ A+ R +R
Sbjct: 482 IKKLSTFINNFGYSIHIGQDEVHPKELQKLLQKIDGTPEEALISRLTLRSMKQAKYTTMS 541
Query: 448 --HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
H L P Y FTSPIRRY DL H +K LRG
Sbjct: 542 TGHFGLATPYYCHFTSPIRRYPDLQIHRIIKDNLRG 577
>gi|410858222|ref|YP_006974162.1| putative ribonuclease [Chlamydia psittaci 01DC12]
gi|410811117|emb|CCO01760.1| putative ribonuclease [Chlamydia psittaci 01DC12]
Length = 682
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 180/415 (43%), Gaps = 58/415 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 188 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 240
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 241 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 300
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ +++ N + K L A L ++
Sbjct: 301 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDKIVE-NKQPHPIAKTLLAMAELSEKF 359
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 360 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 415
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 416 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 474
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 475 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 532
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+LE + + Q RIA + ++ +FL+ QP + Y+A I+
Sbjct: 533 ----TRLEHIVRACSTQERIAAKSEFAFETLKKNRFLHKFLKEQP-DSIYQAYII 582
>gi|18398450|ref|NP_565418.1| exosome complex exonuclease DIS3/RRP44 [Arabidopsis thaliana]
gi|15982745|gb|AAL09713.1| At2g17510/MJB20.7 [Arabidopsis thaliana]
gi|19699186|gb|AAL90959.1| At2g17510/MJB20.7 [Arabidopsis thaliana]
gi|20198264|gb|AAD32908.2| putative mitotic control protein dis3 [Arabidopsis thaliana]
gi|330251544|gb|AEC06638.1| exosome complex exonuclease DIS3/RRP44 [Arabidopsis thaliana]
Length = 933
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 179/394 (45%), Gaps = 46/394 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL HL V+++D ++DDAL L +G ++ +H+AD T ++ PG+ D +A KR
Sbjct: 469 RQDLRHLLVFSVDPPGCKDIDDALHCTSLPNGNFELGVHIADVTNFVHPGTPLDDEASKR 528
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L M P+ L + SLR A +V + D I SIIK +
Sbjct: 529 GTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWEMSPDAEIISTRFTKSIIKSSA 588
Query: 305 MLTYESATELL---HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
L+Y A + L +L+ ++ A + Q R+ +GA+ A+ E + + +PE+
Sbjct: 589 ALSYIEAQARMDDSRLTDSLTTDLRNMNTLAKIMRQRRIDRGALTLASAEVKFDI-DPEN 647
Query: 362 PEPI-INLYVEDQADPAMRLVSEMMI-----LCGEAIATYGSFNNL---ALPYRGQPQS- 411
+P+ I +Y Q A ++V E M+ + G+ + + S + L P R +
Sbjct: 648 HDPLNIGMY---QILEANQMVEEFMLAANVSVAGQILKLFPSCSLLRRHPTPTREMLEPL 704
Query: 412 ---------NIDVSAFAHLPEGPVRS-------SAIVKIMRAAAI---------DFRKP- 445
+DVS+ L + R+ + +++I+ + D P
Sbjct: 705 LRTAAAIGLTLDVSSSKALADSLDRAVGEDPYFNKLIRILATRCMTQAVYFCSGDLSPPE 764
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPF---SAGQLEGMASIVNMQT 502
H L P Y FTSPIRRY D+ H + A L P QL +A +N +
Sbjct: 765 YHHYGLAAPLYTHFTSPIRRYADVFVHRLLAASLGIYKLPTVFQDRPQLTSVADNLNYRH 824
Query: 503 RIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
R A+ S+ +++ + R +P + + R + +R
Sbjct: 825 RNAQMAGRASVELYVLIYFRTRPTDEEARVVKIR 858
>gi|406594105|ref|YP_006741395.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci MN]
gi|405782537|gb|AFS21285.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci MN]
Length = 681
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 180/415 (43%), Gaps = 58/415 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ +++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDKIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 531
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+LE + + Q RIA + ++ +FL+ QP + Y+A I+
Sbjct: 532 ----TRLEHIVRACSTQERIAAKSEFAFETLKKNRFLHKFLKEQP-DSIYQAYII 581
>gi|406668281|ref|ZP_11076019.1| Ribonuclease R [Bacillus isronensis B3W22]
gi|405383884|gb|EKB43345.1| Ribonuclease R [Bacillus isronensis B3W22]
Length = 802
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 159/344 (46%), Gaps = 48/344 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL + + ID +A +LDDA++ ++ +G K+ +H+AD + Y+ GS+
Sbjct: 242 TEQDLVGRRDLRNEVIVTIDGADAKDLDDAVTVVKNDNGTYKLGVHIADVSYYVTQGSVL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +R TSV+L PM P +L+ SL ++ + + G + ++ +
Sbjct: 302 DQEAYERATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMTIDQAGHVVKHEIFQ 361
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L N +E EL K +++ A + R+ +GAID
Sbjct: 362 SVIKTTERMTYSDVYNILE-NPDENPELMERYENLVPMFKDMADLAQILRNKRMARGAID 420
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E+++ V P I V + A RL+ E M+ E IA + + L YR
Sbjct: 421 FDFKESKVLVNEDGWPTDI----VLRERTVAERLIEEFMLAANETIAEHFHWMELPFIYR 476
Query: 407 ----GQPQ---------SNID------------------VSAFAHLPEGPVRSSAIVKIM 435
+P+ +N + + LPE PV S+ +++ M
Sbjct: 477 IHEDPKPEKLQRFFEFVTNFGIMIKGTGNSVHPKALQEVIRSIEGLPEEPVISTMLLRSM 536
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A + + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 537 QQAKY-YAESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 579
>gi|323488676|ref|ZP_08093918.1| ribonuclease R [Planococcus donghaensis MPA1U2]
gi|323397694|gb|EGA90498.1| ribonuclease R [Planococcus donghaensis MPA1U2]
Length = 774
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 163/340 (47%), Gaps = 48/340 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L +R+DL + ++ ID +A +LDDA+ ++ +DG K+ +H+AD + Y+ GS D++
Sbjct: 246 DLNDRRDLRNEQIVTIDGADAKDLDDAVQVVKYEDGTYKLGVHIADVSHYVTEGSPIDRE 305
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A R TS++L PM P +L+ SL ++ ++ + G + + + S+I
Sbjct: 306 AYDRATSIYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIFNDQGEVQSHEIFQSVI 365
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
+ +TY E+L + +E E +++ E A + R+++GAID E+
Sbjct: 366 NTSARMTYTDVYEILEQDNQELKEQYSELVPMFELMKELAEVLRTKRMRRGAIDFDFKES 425
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR---- 406
++ V P +++ + ++ + RL+ E M+ E +A + F+N+ +P YR
Sbjct: 426 KVLVDENGYP---VDVVIRERT-VSERLIEEFMLAANETVAEH--FHNMEVPAIYRIHED 479
Query: 407 GQPQ---------SNID------------------VSAFAHLPEGPVRSSAIVKIMRAAA 439
+P+ +N V + A PE PV S+ +++ M+ A
Sbjct: 480 PKPEKLQRFFEFVTNFGIVVKGSGTQIHPRALQEIVESIAGTPEEPVISTMMLRSMQQAK 539
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 540 YS-AESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 578
>gi|418977627|ref|ZP_13525441.1| ribonuclease R [Streptococcus mitis SK575]
gi|383349595|gb|EID27524.1| ribonuclease R [Streptococcus mitis SK575]
Length = 784
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K ++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHEILENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|323484420|ref|ZP_08089786.1| hypothetical protein HMPREF9474_01537 [Clostridium symbiosum
WAL-14163]
gi|323402198|gb|EGA94530.1| hypothetical protein HMPREF9474_01537 [Clostridium symbiosum
WAL-14163]
Length = 733
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 171/373 (45%), Gaps = 43/373 (11%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ L RKDL L+ ID +EA +LDDA++ + Q G ++ +H+AD T Y+ S D+
Sbjct: 263 EELAGRKDLRELQTVTIDGEEAKDLDDAITIKKTQGG-YELGVHIADVTHYVREHSPLDE 321
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A+KRGTSV+L PM P KL+ SL QGE A++ + + G++ + + ++
Sbjct: 322 EALKRGTSVYLTDRVIPMLPHKLSNGICSLNQGEDRLALSCLMDIDEKGTVTGHEIVETV 381
Query: 300 IKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ +TY + ++ + E + +++ E A + + R +G+ID E
Sbjct: 382 IRVDRRMTYTAVNAVITEHDPEAMKEYEGFTGMFELMKELADILRKKRHSRGSIDFDFPE 441
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
++I + P + + D+ + A RL+ + M+L E +A + + YR
Sbjct: 442 SKIVLDEKGRP---VEIKPYDR-NAATRLIEDFMLLANETVAEDYFWQEIPFLYRTHDNP 497
Query: 412 NID--------VSAFAH---LPEGPVRSSAIVKIMRAA------AIDFRKPVR------- 447
+ + ++ F + +P G V + K++ A+ R +R
Sbjct: 498 DEEKMKKLGTFINNFGYTIRMPGGEVHPKELQKLLDKVEGTPEEALISRLTLRSMKQAKY 557
Query: 448 ------HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQ 501
H L Y FTSPIRRY DL H +K CL G+ E + V+++
Sbjct: 558 TTQNSGHFGLATKYYTHFTSPIRRYPDLQIHRIIKECLNGKMDGKRVSHYEKILPEVSVK 617
Query: 502 TRIARRLSNTSLR 514
T R ++ + R
Sbjct: 618 TSALERRADEAER 630
>gi|187931190|ref|YP_001891174.1| ribonuclease R [Francisella tularensis subsp. mediasiatica FSC147]
gi|187712099|gb|ACD30396.1| ribonuclease R [Francisella tularensis subsp. mediasiatica FSC147]
Length = 765
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 151/348 (43%), Gaps = 47/348 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH +G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKDGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
M A G L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|419532199|ref|ZP_14071716.1| ribonuclease R [Streptococcus pneumoniae GA47794]
gi|379606369|gb|EHZ71117.1| ribonuclease R [Streptococcus pneumoniae GA47794]
Length = 784
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 164/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRA------AAIDFRKPVR-- 447
+P Q ID S+F + + A+ IMRA A + F +R
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLFMMLLRSM 534
Query: 448 ---------HGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|330444259|ref|YP_004377245.1| hypothetical protein G5S_0568 [Chlamydophila pecorum E58]
gi|328807369|gb|AEB41542.1| conserved hypothetical protein [Chlamydophila pecorum E58]
Length = 674
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 152/340 (44%), Gaps = 44/340 (12%)
Query: 169 KDISNFLQKA-EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S F QK L RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 189 QEASQFSQKHITQTLRTRKDLRDLLCFTIDSVTAKDFDDAVSLTYDNNNNYILGVHIADV 248
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S DK+A KR SV+ P PM P L+ SL+ AV+V + +
Sbjct: 249 SHYVTPHSHLDKEAEKRCNSVYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKN 308
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELL-----HLNLEEEAELKILSEAAALRLQWRLQQ 342
G++++Y + S+I+ Y +TY+ +L H + +K LS+ A R Q+
Sbjct: 309 GNLSDYQIFRSVIRSKYRMTYDEVDNILEKKQTHPISKTLHAMKSLSKKLA---DIREQR 365
Query: 343 GAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA 402
G I + + N ++P + VE+ + +L+ E M+ E IA + S +
Sbjct: 366 GCIRFVLPSYTMSLDNLQEPVAL----VENHQTDSHKLIEEFMLKANEIIAYHISHQGIT 421
Query: 403 LPYR-GQPQSNIDVSAFAHL-----------------------------PEGPVRSSAIV 432
LP+R +P ++ ++ +F + P V S V
Sbjct: 422 LPFRIHEPPNDDNLISFQEIAKSMGFDITLTPTQEPDYQYLLQTTTSGHPLEQVIHSQFV 481
Query: 433 KIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 482 RSMKTASYSIENKGHYG-LKLDYYTHFTSPIRRYIDLIVH 520
>gi|359785993|ref|ZP_09289137.1| exoribonuclease II [Halomonas sp. GFAJ-1]
gi|359296696|gb|EHK60940.1| exoribonuclease II [Halomonas sp. GFAJ-1]
Length = 657
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 152/345 (44%), Gaps = 38/345 (11%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT + ID ++ ++DDAL + +G ++ + +ADPT Y+E G +D
Sbjct: 198 DEGLTREDLTATPFFTIDGEKTRDMDDALHISQRAEGGWRLSVAIADPTAYVEEGHAADL 257
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A R +V+LP M PE+LA + SL +G+ A+ ++ +++DGS+ +Y +
Sbjct: 258 EARTRAFTVYLPGQNVTMLPEQLADDLCSLWEGQERPALACTLDINADGSLGDYRFFAAN 317
Query: 300 IKPTYMLTYESATELLHLNLEEE------AELKILSEAAALRLQWRLQQGAIDTATLETR 353
+K L Y+S ++ + E +L L E R WR + + + R
Sbjct: 318 VKSHAKLAYDSVSDWIEGQGEWAPADDVAEQLTALRELTEARTAWRNEHALV----FKDR 373
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMIL----CGEAIATYGSFNNLALPYRGQP 409
DP + ++ A R++ E MI+ C + +A + + +P
Sbjct: 374 PDYVFDLDPAGNVLAVRTEERRIANRMIEESMIVANACCADFLAQHIGHGIFNVHRAFEP 433
Query: 410 QSNIDVSAFAHLPEGPVRSSAIVKIMR------------AAAIDFR------------KP 445
+ F E V A+ ++ R A +D R +P
Sbjct: 434 EKAEAAQEFLAGQEIVVEREALTELARYTELKRALESRDDAWLDARLRRFQGFTSMSAQP 493
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQ 490
H LGL Y +TSPIR+Y D++ H +K L+GE P A Q
Sbjct: 494 GPHFGLGLAAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEATQ 538
>gi|403061863|ref|YP_006650079.1| exoribonuclease R [Streptococcus suis S735]
gi|402809189|gb|AFR00681.1| exoribonuclease R [Streptococcus suis S735]
Length = 789
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 168/358 (46%), Gaps = 55/358 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DREAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ A K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNKEKLATYKAIVPSVELMVKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TTEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
M+ A +G LG Y FTSPIRRY DLL H V+ G +P A E
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMVREY--GHNPVEKAEHFE 590
>gi|358464768|ref|ZP_09174726.1| ribonuclease R [Streptococcus sp. oral taxon 058 str. F0407]
gi|357066297|gb|EHI76447.1| ribonuclease R [Streptococcus sp. oral taxon 058 str. F0407]
Length = 784
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 160/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRGELTFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L + R ++GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHETLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGIRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|189459727|ref|ZP_03008512.1| hypothetical protein BACCOP_00355 [Bacteroides coprocola DSM 17136]
gi|189433574|gb|EDV02559.1| ribonuclease R [Bacteroides coprocola DSM 17136]
Length = 716
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 166/374 (44%), Gaps = 42/374 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L+ G +V +H+AD + Y++ GS+ DK+A+KR
Sbjct: 260 REDFRDIVTFTIDPKDAKDFDDALSIRQLKPGLWEVGVHIADVSHYVKEGSIIDKEAVKR 319
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A +V ++ I +Y + +++IK
Sbjct: 320 ATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFNMNEKAEIKDYRIRHTVIKSNR 379
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A ++ + + E+ L++ A + + R+ GAI+ E + ++ P
Sbjct: 380 RFTYEEAQNIIETGEGDYKEEILQLNKLAQILREKRMAAGAINFDRCEVKFEIDEKGKP- 438
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR------------ 406
+++Y + + A +L+ E M+L +A + + PYR
Sbjct: 439 --LSVYFK-VSKEANKLIEEFMLLANRTVAEHIGKVPKNKKPKVFPYRIHDLPDPDKLDN 495
Query: 407 --------------GQPQSNIDVSAFAHLP--EGPVRSSAIVKIMRAAAIDFRKPVR--- 447
G ++++ S L EG + I + A R +
Sbjct: 496 LSQFIARFGYKIRTGGSKTDVSKSINRLLSDIEGKKEQNLIETVSLRAMQKARYSIYNIG 555
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
H L Y FTSPIRRY DL+ H + L G A + E + + + A
Sbjct: 556 HYGLAFDFYTHFTSPIRRYPDLMVHRLLTRYLAGGRTA-QADKYEELCEHSSAMEQTAAS 614
Query: 508 LSNTSLRYWIIEFL 521
S++Y +EF+
Sbjct: 615 AERASIKYKQVEFM 628
>gi|116873813|ref|YP_850594.1| ribonuclease R [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742691|emb|CAK21815.1| ribonuclease R, putative [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 793
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 178/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + DG + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTISCEMEIDQDGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEVLREKYAPIVPMLEAMQHLAEILRHKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETIEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|417794327|ref|ZP_12441585.1| ribonuclease R [Streptococcus oralis SK255]
gi|334270171|gb|EGL88578.1| ribonuclease R [Streptococcus oralis SK255]
Length = 784
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 160/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L + R ++GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHETLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|399912037|ref|ZP_10780351.1| ribonuclease R [Halomonas sp. KM-1]
Length = 797
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 148/344 (43%), Gaps = 44/344 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
AE + +R DL + + ID ++A + DDA+ A + + G K+ + +AD + Y+ PG+
Sbjct: 260 AEQDKQHRIDLRDIPLVTIDGEDAKDFDDAVCAWKTKSGSWKLIVAIADVSHYVRPGTPL 319
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A++RG SV+ P PM PE L+ SL A+ + + G I+ Y
Sbjct: 320 DEEAIRRGNSVYFPGQVVPMLPELLSNGLCSLNPDVDRLAMVCEMNISKQGVISRYRFYE 379
Query: 298 SIIKPTYMLTYESATELLHLN------LEEE-----AELKILSEAAALRLQWRLQQGAID 346
++ + LTY +L + L EE LK L E + Q R ++GAID
Sbjct: 380 AVFRSHARLTYNKVAAILDEDDPEGDALREEYRALVKPLKGLHELYKVLRQAREERGAID 439
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
T ET I E I+ D A +++ E M+ A A + ++L YR
Sbjct: 440 FETTETAILFNEERKIEKIVPRTRND----AHKIIEECMLAANVATARFLDKHDLPALYR 495
Query: 407 --------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIM-RAAA 439
G + D A A G + I +M R+ +
Sbjct: 496 IHERPSPERLDKLRLFLNELGLSVGGGDEPTPQDYQALAEAIRGRPDADVIQTVMLRSMS 555
Query: 440 IDFRKPVRHGVLGL--PGYVQFTSPIRRYMDLLAHYQVKACLRG 481
P G GL P Y FTSPIRRY DLL H +++ +RG
Sbjct: 556 QAVYSPQNEGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVVRG 599
>gi|86145755|ref|ZP_01064084.1| exoribonuclease II [Vibrio sp. MED222]
gi|85836454|gb|EAQ54583.1| exoribonuclease II [Vibrio sp. MED222]
Length = 668
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 112/416 (26%), Positives = 182/416 (43%), Gaps = 47/416 (11%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQN----GASCSIKPQQVTFVVPGVEKF 166
QKGL E K+ D V+ + Q P N + + A I P VT +
Sbjct: 116 QKGLNPETLKEGDWVVAHIVQHPLKGDNGFLAQISEKITDADDKIAPWWVTLAQNDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ + I ++ Q +D L R D+TH+ ID + ++DDAL A + ++G ++ I +AD
Sbjct: 176 EPEGIDDW-QIKDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA SL + EV A+ +V +
Sbjct: 235 PTAYISPDDEMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSK 294
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQ 337
DG I + + + IK L Y+ ++ L E+ A + L + A R
Sbjct: 295 DGVIGDDINFFAANIKSHARLAYDHVSDWLETGASEKWQPSEEIAAIVSDLHQFAQARSA 354
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAIA- 393
WR + + R +++ D ++ ++ D A +LV E MI +C +
Sbjct: 355 WRSANAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANKLVEESMISANICAGRVLK 410
Query: 394 ---TYGSFN--------------NLALPYRGQPQSN---IDVSAFAHLPE--GPVRSSAI 431
G FN L P P + + + FA L G + +S
Sbjct: 411 ESFNQGVFNCHSGFKAEKLTDVLELVNPEAETPFTEEQIVSLEGFATLRRWLGSLDNSYY 470
Query: 432 ---VKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
++ +A + +P H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 471 DNRIRKFQAYSEISNEPAPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILGKAP 526
>gi|255531532|ref|YP_003091904.1| ribonuclease R [Pedobacter heparinus DSM 2366]
gi|255344516|gb|ACU03842.1| ribonuclease R [Pedobacter heparinus DSM 2366]
Length = 709
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 161/375 (42%), Gaps = 45/375 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD + + ID +A + DDA+S L++G ++ +H+AD + Y++P S DK+A R
Sbjct: 255 RKDFRNTTTFTIDPADAKDFDDAISFKTLENGNYEIGVHIADVSHYVKPNSSLDKEAYAR 314
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGE--VCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
TSV+L PM PE+L+ SLR E +C A L ++ ++I
Sbjct: 315 ATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFE--LDEKANLVNEWFGRTVIHS 372
Query: 303 TYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+YE A E++ + AE+ L+E A + + + GAI + E + K+
Sbjct: 373 DRRFSYEEAQEVIENKAGDYAAEILKLNELAYILRDKKFKNGAISFESTEVKFKLDETGK 432
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYRGQPQSNI-DV 415
P I +YV+++ D A +L+ + M+L + +A + YR N+ ++
Sbjct: 433 P---IGVYVKERKD-AHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFVYRSHDSPNLENL 488
Query: 416 SAFAHLP--------------------------EGPVRSSAIVKIM---RAAAIDFRKPV 446
FA EG + + ++ A AI K
Sbjct: 489 GNFALFAARFGYKINMKSDKEIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAKAIYTTKKT 548
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
H L Y FTSPIRRY D++ H + A L E + + E AS + + A
Sbjct: 549 SHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNNEKSA-NEEEYEIAASHSSAMEKRAA 607
Query: 507 RLSNTSLRYWIIEFL 521
S++Y E+L
Sbjct: 608 DAERASIKYKQAEYL 622
>gi|312143213|ref|YP_003994659.1| ribonuclease R [Halanaerobium hydrogeniformans]
gi|311903864|gb|ADQ14305.1| ribonuclease R [Halanaerobium hydrogeniformans]
Length = 715
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 159/344 (46%), Gaps = 58/344 (16%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL LK+ ID +A +LDDA+S ++ D + ++ +H+AD + Y++ GSL DK+A
Sbjct: 246 DRVDLRDLKLLTIDGADAKDLDDAVSIEKISDKKYRLGVHIADVSHYVKKGSLLDKEAYN 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG----SIAEYSVDNSI 299
R TS++L PM PEKL+ SL +TV + G I+++ + S+
Sbjct: 306 RATSIYLVDRVIPMLPEKLSNGICSLNPHVDRMTLTVFIEYKLCGKIGIEISDHQIVKSV 365
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--------RLQWRLQQGAIDTATLE 351
IK + +TY+ A ++ E+ + KI E + +L+ RL++ + +++
Sbjct: 366 IKSNHRMTYDDAQAII-----EDKDEKIKDEYSDFVEEINMMNKLRERLRKNRFEEGSMD 420
Query: 352 ---TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMILCGEAIATYGSFNNLALPY 405
T +KV E +P V+ + P A +L+ E MI +A S+ + Y
Sbjct: 421 FNFTEVKVELDEQGKP-----VKLKKRPHREAEQLIEEFMIAANRIVAAEMSWREMPFIY 475
Query: 406 RGQPQSNID--------VSAFAHLPEG---------------PVRSSAIVKIMRAA---- 438
R + ++D + F + +G VR S KI+
Sbjct: 476 RIHEEPDLDRMIQFKEFIHNFGYELKGIKNGVHPRSLQAILEEVRGSKEEKIIETVMLRS 535
Query: 439 ---AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A+ K + H LG+ Y FTSPIRRY DL AH +K +
Sbjct: 536 LKKAVYSEKNIGHFGLGVTHYTHFTSPIRRYPDLTAHRIIKETI 579
>gi|218296600|ref|ZP_03497318.1| ribonuclease R [Thermus aquaticus Y51MC23]
gi|218242913|gb|EED09446.1| ribonuclease R [Thermus aquaticus Y51MC23]
Length = 737
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 162/333 (48%), Gaps = 36/333 (10%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ L R+D L+V+ ID +A + DDA+ RL G +V +H+AD + Y++ GSL D
Sbjct: 220 EEELRRRQDFRALRVFTIDGVDAKDFDDAIHIERLPKG-YRVGVHIADVSFYVKEGSLLD 278
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A RGTSV+LP PM PE+L+ SLR GE ++V V L D +
Sbjct: 279 QEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLGEDLEVKRVRFAEG 338
Query: 299 IIKPTYMLTY---ESATELL-----HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+I+ LTY E+ E H L E +L +L + + RL++G++D +
Sbjct: 339 VIRSVARLTYTEVEAFAEGFGLPEAHAFLAE--DLSLLLDLTQRMREKRLKEGSLDFSFP 396
Query: 351 ETRIKVAN------PEDPEPIINLYVEDQADPAMRLVSEMMILCG---------EAI-AT 394
E +++V P++ EP +E+ A RLV+E ++ G E +
Sbjct: 397 EVKVEVEGGTLRLIPQE-EPRARSLIEELMLLANRLVAEHLVKRGLPGLFRVHEEPLEEA 455
Query: 395 YGSFN------NLALPYRGQPQSNIDVSAFAH-LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
YG LP + ++ V A PE PV ++ +++ +R A +
Sbjct: 456 YGKLRQALQRLGYTLPEKVSAKALQKVLLEAKGRPEEPVVANLVLRSLRLARYAPEN-LG 514
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
H L + Y+ FTSPIRRY DL+ H ++A +R
Sbjct: 515 HFGLAMEHYLHFTSPIRRYPDLVVHRVLRASMR 547
>gi|220929659|ref|YP_002506568.1| ribonuclease R [Clostridium cellulolyticum H10]
gi|219999987|gb|ACL76588.1| ribonuclease R [Clostridium cellulolyticum H10]
Length = 788
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 161/356 (45%), Gaps = 45/356 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R+DL L++ ID ++A +LDDA+S L++G ++ +H+AD T Y+ S
Sbjct: 242 TEEMIQGRRDLRGLRMVTIDGEDAKDLDDAVSIETLENGNYRLGVHIADVTNYVTENSPL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A+ RGTSV+L PM P KL+ SL + +V + + +G + +
Sbjct: 302 DLEALDRGTSVYLVDRVIPMLPRKLSNGICSLNPHVDRLSFSVMIDIDKNGKAYNHEIFE 361
Query: 298 SIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTAT 349
S+I +TY + ++L N +E ++ + + E A + + R Q+GAID
Sbjct: 362 SVINIDERMTYTNVYKILEENDQELIKRYSHVVSDFQKMKELALILRKKRFQRGAIDFDF 421
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E R+ + E +PI + Y + A +++ E M+ C E +A + + N YR
Sbjct: 422 DEARVVI--DEKGKPIDVKRY---EITIANQIIEEFMLACNETVAEHFFWTNTPFVYRIH 476
Query: 409 PQ-----------------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKP 445
+ I A L E V+ + +I+ A + +
Sbjct: 477 EDPDEEKIHNLNEFLYNLGYSIKGINKIHPRALQDLLE-KVKGTRHERIISTAMLRSLQK 535
Query: 446 VRH-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGM 494
R+ G GL Y FTSPIRRY DL+ H +K L+G LEG+
Sbjct: 536 ARYSNESTGHFGLAAKYYCHFTSPIRRYPDLIIHRIMKLYLKGGMSEEKINHLEGI 591
>gi|89098803|ref|ZP_01171684.1| ribonuclease R [Bacillus sp. NRRL B-14911]
gi|89086479|gb|EAR65599.1| ribonuclease R [Bacillus sp. NRRL B-14911]
Length = 780
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 155/342 (45%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + NR+DL + ID +A +LDDA++ +L++G K+ +H+AD T Y+ + D
Sbjct: 244 ESEIKNRRDLRDQTIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVTYYVRENTPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +R TS++L PM P +L+ SL ++ + + S G + + + S
Sbjct: 304 QEAEERATSIYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEMDSSGEVVNHEIFQS 363
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L EE + +++ E AA+ + R+ +GAID
Sbjct: 364 VIKTTERMTYHDVNKILTDKDEELMKRYEPLVPMFQLMEELAAVLRKKRMGRGAIDFDFK 423
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E+++ V P + V + A RL+ E M+ E +A + + ++ YR
Sbjct: 424 ESKVLVDEEGKPSDV----VLRERSVAERLIEEFMLAANETVAEHFHWMDVPFIYRIHED 479
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
D ++ F ++ PE V S+ +++ M+ A
Sbjct: 480 PKEDKLRRFFEFITNFGYIVKGTANSVHPRALQEIIEEVQGTPEEMVISTVMLRSMQQAK 539
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 540 YD---PESLGHFGLSTEFYTHFTSPIRRYPDLVVHRLIRTYL 578
>gi|251771616|gb|EES52192.1| ribonuclease R [Leptospirillum ferrodiazotrophum]
Length = 759
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 163/380 (42%), Gaps = 48/380 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D L++ ID D A + DDA+S DG + + IH+AD + Y+ PGS D++
Sbjct: 283 ERRDFRSLEIVTIDGDTAKDFDDAISIEEEDDGTVTLGIHIADVSAYVLPGSALDREGFA 342
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+ P PMFPE L+ +SL A +V+ + +G + +++D S+I+
Sbjct: 343 RATSVYFPDRVLPMFPEVLSNGVLSLNPETDRLARSVTARIDREGQVLSWTLDRSVIRSR 402
Query: 304 YMLTYESATELLHLN-----LEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
+TY L L E L + A+L + R+ +G++D E I +
Sbjct: 403 MRMTYSEVHRALTGEPSPDYLPYENRLHTMWRVASLLRKRRMGKGSLDFDLPEPEIVLDL 462
Query: 359 PEDPEPIIN--LYVEDQADPAMRLVSEMMILCGEAIAT---------------------- 394
+P I+ Y+ Q L+ E M+L +AT
Sbjct: 463 RGEPVDILRSPRYLSHQ------LIEEFMLLANTLVATRLRERLGTALFRAHETPTPEKI 516
Query: 395 ---YGSFNNLALPYRGQPQ--SNIDVSAFAHLPEG-----PVRSSAIVKIMRAAAIDFRK 444
Y +L LP+ +P+ + D+S +G PV S +++ ++ A D
Sbjct: 517 ENLYSFLASLGLPFT-KPEVVTPRDLSRILEETKGSPLEHPVHYS-VLRSLKQARYD-PS 573
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRI 504
P+ H L P Y FTSPIRRY DL+ H + G L +A + + R
Sbjct: 574 PLGHFGLAFPDYTHFTSPIRRYPDLIVHRLLDLATSSGMESLLPGSLSAVAQHCSERERK 633
Query: 505 ARRLSNTSLRYWIIEFLRRQ 524
A ++ + + F+ +
Sbjct: 634 ATEAERMAIDFKKVRFISKH 653
>gi|332522458|ref|ZP_08398710.1| ribonuclease R [Streptococcus porcinus str. Jelinkova 176]
gi|332313722|gb|EGJ26707.1| ribonuclease R [Streptococcus porcinus str. Jelinkova 176]
Length = 782
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 162/342 (47%), Gaps = 53/342 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ +L+ R DL + ID +A +LDDA+ L +G ++ +H+AD + Y+ GS
Sbjct: 245 SDKDLVGRIDLRKEITFTIDGADAKDLDDAIHIKPLANGNYELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
D++A+ RGTSV++ PM PE+L+ SL + +T S ++ S+G + Y +
Sbjct: 305 DQEAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDSNGKVLNYQI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAA-------ALRLQWRLQQGAIDTA 348
S+I T+ +TY + ++L + E E +SE+ + + R+++GA++
Sbjct: 363 CQSVINTTFRMTYSAVNDMLAGDEEMLQEYAAISESVEHMAKLHKILERMRIKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
TLE RI V P +++ V + A R++ M+ E +A + + +N YR
Sbjct: 423 TLEARILVNEKGMP---VDIVVRTRG-IAERMIESFMLAANECVAEHFARSNYPFIYRIH 478
Query: 407 GQPQSN-----IDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV--------------- 446
+P+S ID ++ + ++ +A KI + A DF V
Sbjct: 479 EEPKSEKLQKFIDYASVFGI---QIKGTA-AKISQEALQDFMAKVDGKPGAEVLNMMLLR 534
Query: 447 ----------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 SMQQARYSETNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 576
>gi|212692333|ref|ZP_03300461.1| hypothetical protein BACDOR_01829 [Bacteroides dorei DSM 17855]
gi|237711407|ref|ZP_04541888.1| ribonuclease R [Bacteroides sp. 9_1_42FAA]
gi|265752813|ref|ZP_06088382.1| ribonuclease R [Bacteroides sp. 3_1_33FAA]
gi|345514123|ref|ZP_08793637.1| ribonuclease R [Bacteroides dorei 5_1_36/D4]
gi|423240669|ref|ZP_17221783.1| ribonuclease R [Bacteroides dorei CL03T12C01]
gi|212665210|gb|EEB25782.1| ribonuclease R [Bacteroides dorei DSM 17855]
gi|229435940|gb|EEO46017.1| ribonuclease R [Bacteroides dorei 5_1_36/D4]
gi|229454102|gb|EEO59823.1| ribonuclease R [Bacteroides sp. 9_1_42FAA]
gi|263235999|gb|EEZ21494.1| ribonuclease R [Bacteroides sp. 3_1_33FAA]
gi|392643631|gb|EIY37380.1| ribonuclease R [Bacteroides dorei CL03T12C01]
Length = 715
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 175/381 (45%), Gaps = 42/381 (11%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R+D ++ + ID +A + DDALS ++ G +V +H+AD T Y++ GS+
Sbjct: 252 SEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGSVI 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + + +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDSRIVH 371
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+IIK TYE A +++ + + E+ L++ A + + RL GAID +E + ++
Sbjct: 372 TIIKSDRRFTYEEAQKVIETGEGDYKEEILELNKLAQILRKQRLAAGAIDFDRIEVKFEI 431
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT-YGSF--NNLA--LPYR----G 407
P +++Y ++ + A +L+ E M+L +A G N A PYR
Sbjct: 432 DETGKP---LSVYFKESKE-ANKLIEEFMLLANRTVAERIGKVPKNKKAKVFPYRIHDLP 487
Query: 408 QPQSNIDVSAFAHLPEGPVRSSA-----------------------IVKIMRAAAIDFRK 444
P +++ F + +R+S +V+ + A+ +
Sbjct: 488 DPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQKAR 547
Query: 445 PVRHGV----LGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
H + L Y FTSPIRR+ D++ H + L G + E + +
Sbjct: 548 YSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRYLAG-GRTVQETKYEELCDHSSE 606
Query: 501 QTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 607 MEQIAANAERASVKYKQVEFM 627
>gi|168483045|ref|ZP_02707997.1| ribonuclease R [Streptococcus pneumoniae CDC1873-00]
gi|417696164|ref|ZP_12345343.1| ribonuclease R [Streptococcus pneumoniae GA47368]
gi|418109939|ref|ZP_12746964.1| ribonuclease R [Streptococcus pneumoniae GA49447]
gi|418169075|ref|ZP_12805719.1| ribonuclease R [Streptococcus pneumoniae GA19077]
gi|418175790|ref|ZP_12812387.1| ribonuclease R [Streptococcus pneumoniae GA41437]
gi|418218718|ref|ZP_12845385.1| ribonuclease R [Streptococcus pneumoniae NP127]
gi|418221027|ref|ZP_12847681.1| ribonuclease R [Streptococcus pneumoniae GA47751]
gi|418238549|ref|ZP_12865104.1| ribonuclease R [Streptococcus pneumoniae NorthCarolina6A-23]
gi|419422786|ref|ZP_13963002.1| ribonuclease R [Streptococcus pneumoniae GA43264]
gi|419459818|ref|ZP_13999751.1| ribonuclease R [Streptococcus pneumoniae GA02270]
gi|419462135|ref|ZP_14002045.1| ribonuclease R [Streptococcus pneumoniae GA02714]
gi|419488971|ref|ZP_14028721.1| ribonuclease R [Streptococcus pneumoniae GA44386]
gi|172043441|gb|EDT51487.1| ribonuclease R [Streptococcus pneumoniae CDC1873-00]
gi|332201439|gb|EGJ15509.1| ribonuclease R [Streptococcus pneumoniae GA47368]
gi|353782851|gb|EHD63281.1| ribonuclease R [Streptococcus pneumoniae GA49447]
gi|353834917|gb|EHE15013.1| ribonuclease R [Streptococcus pneumoniae GA19077]
gi|353842358|gb|EHE22405.1| ribonuclease R [Streptococcus pneumoniae GA41437]
gi|353875373|gb|EHE55225.1| ribonuclease R [Streptococcus pneumoniae NP127]
gi|353875950|gb|EHE55800.1| ribonuclease R [Streptococcus pneumoniae GA47751]
gi|353894299|gb|EHE74041.1| ribonuclease R [Streptococcus pneumoniae NorthCarolina6A-23]
gi|379532844|gb|EHY98068.1| ribonuclease R [Streptococcus pneumoniae GA02270]
gi|379532981|gb|EHY98204.1| ribonuclease R [Streptococcus pneumoniae GA02714]
gi|379587864|gb|EHZ52711.1| ribonuclease R [Streptococcus pneumoniae GA44386]
gi|379588244|gb|EHZ53089.1| ribonuclease R [Streptococcus pneumoniae GA43264]
Length = 784
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ EA+A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANEAVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|452993252|emb|CCQ95219.1| Ribonuclease R [Clostridium ultunense Esp]
Length = 703
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 176/375 (46%), Gaps = 46/375 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+++ NR DL L + ID +A +LDDA+S ++ + ++ +H+AD + Y+ S D
Sbjct: 239 EEDIKNRVDLKDLNTFTIDGADAKDLDDAVSIEKVGEN-YRLGVHIADVSHYVPERSPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A KRG SV+L PM P++L+ SL + +T+S+ + D G++ ++ +
Sbjct: 298 KEAYKRGNSVYLVDRVIPMLPKELSNGICSLNPN--VDRLTLSIFMEIDRNGNVVDHEIV 355
Query: 297 NSIIKPTYMLTYESATELLHLN-------LEEEAE-LKILSEAAALRLQWRLQQGAIDTA 348
+I+ L Y+ ++LL + L++ E LK++ E + + + R +G+ID
Sbjct: 356 EGVIRSKARLVYDDVSDLLENDNYKAFDKLDKIVEDLKLMEELSHILYERREGRGSIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E RI + D E + V++ A R++ E M++C E IA Y ++ + YR
Sbjct: 416 FPEARIIL----DEEGVPVDIVKEDRRIANRMIEEFMLVCNETIAEYMYWSEVPFLYRVH 471
Query: 409 PQSNID--------VSAFAHLPEG-----PVRSSAIVKIMRAAAIDF------------- 442
+ +++ V F ++ +G P + K ++ +
Sbjct: 472 EEPDMEKINSFNKFVHNFGYMIKGTQEVHPKELQRLTKEVKGKKEETLINTLLLRSLKKA 531
Query: 443 ---RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+P H L Y +T+PIRRY DL H +K+ +G+ P +LE + V
Sbjct: 532 RYSSEPDIHFGLAAKYYSHYTAPIRRYPDLQIHRILKSFYKGKLNPQEQAKLEAILPKVA 591
Query: 500 MQTRIARRLSNTSLR 514
T I R + + R
Sbjct: 592 EHTSITERTAEEAER 606
>gi|410457285|ref|ZP_11311099.1| ribonuclease R [Bacillus bataviensis LMG 21833]
gi|409925321|gb|EKN62537.1| ribonuclease R [Bacillus bataviensis LMG 21833]
Length = 794
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 156/343 (45%), Gaps = 50/343 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E L NR+DL + + ID +A +LDDA++ +L +G K+ +H+AD + Y++ G+ D
Sbjct: 244 ESELANRRDLRNETIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVSYYVKEGTPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A +R TSV+L PM P +L+ SL ++ + + S+G++ + + S
Sbjct: 304 LEAEERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLVLSCEMEITSEGAVVSHEIFQS 363
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE---------LKILSEAAALRLQWRLQQGAIDTAT 349
+IK T +TY L+ + EEE +++ E AA+ R+++GAID
Sbjct: 364 VIKTTERMTYHDVN-LILVEKEEETRKRYEPIVPMFELMEELAAILRNKRMKRGAIDFDF 422
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E+++ V P + V + A +L+ E M+ E +A + + ++ YR
Sbjct: 423 KESKVLVDEEGKPTDV----VLRERSVAEKLIEEFMLAANETVAEHFHWMDVPFIYRIHE 478
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D ++ F ++ PE V S +++ M+ A
Sbjct: 479 DPKEDKLRRFFEFITNFGYIVKGTANDVHPKALQEIIEEVQGKPEEMVVSKVMLRSMQQA 538
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY D + H ++ L
Sbjct: 539 KYD---PESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIRTYL 578
>gi|423068592|ref|ZP_17057380.1| ribonuclease R [Streptococcus intermedius F0395]
gi|355365892|gb|EHG13611.1| ribonuclease R [Streptococcus intermedius F0395]
Length = 779
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 160/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R DL + + ID +A +LDDA+ +L +G ++ +H+AD + Y++ GS
Sbjct: 242 SKKDFEGRLDLRNEITFTIDGADAKDLDDAVHIKKLSNGHFELGVHIADVSYYVQEGSEL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 302 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDQKGRVVKHTI 359
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKI-------LSEAAALRLQWRLQQGAIDTA 348
+I+K T+ +TY +++ + ++ A K ++E A+ R ++GA++
Sbjct: 360 TQTIVKTTFRMTYSDVNDMIAGDEKKRAAFKAIVPSIEQMAELHAILETMRFKRGALNFD 419
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P II Q A R++ M++ E +A + F L LP+
Sbjct: 420 TKEAKILVNKTGRPVDIILR----QRGLAERMIESFMLVANETVAEH--FAKLKLPFIYR 473
Query: 406 -RGQP-----QSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S F G S SA+ IM+A + V
Sbjct: 474 IHEEPKAEKVQKFIDFASTFGVRVYGTANSISQSALQDIMKAVHGQPYEEVLSMMLLRSM 533
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
+G GL Y FTSPIRRY DLL H V+ R
Sbjct: 534 QQARYSEHNYGHYGLAAEFYTHFTSPIRRYPDLLVHRMVRDYGR 577
>gi|290954594|ref|ZP_06559215.1| ribonuclease R [Francisella tularensis subsp. holarctica URFT1]
Length = 680
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 146/335 (43%), Gaps = 43/335 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+E S D DA +
Sbjct: 194 NRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYVEKDSALDLDAKR 253
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+ P PM PEKL+ SLR E ++ + + +G ++ Y +++I
Sbjct: 254 RSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLSRYKFYSAVINSK 313
Query: 304 YMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY +LL +E EL L E + Q R ++GAID T+ET+I
Sbjct: 314 ARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERGAIDFDTVETQII 373
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
+ E I+ + D A RL+ E M++ A A + + P+R + D
Sbjct: 374 LDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTSPFRVHSEPKEDR 429
Query: 416 SA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV------------ 446
AH G V A+ +++ R D R
Sbjct: 430 METLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMTLRSMNQAVYSIN 489
Query: 447 --RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
H L Y FTSPIRRY DL+ H +K+ +
Sbjct: 490 NDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSII 524
>gi|156501956|ref|YP_001428021.1| ribonuclease R [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|156252559|gb|ABU61065.1| ribonuclease R [Francisella tularensis subsp. holarctica
FTNF002-00]
Length = 723
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 146/335 (43%), Gaps = 43/335 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+E S D DA +
Sbjct: 233 NRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYVEKDSALDLDAKR 292
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+ P PM PEKL+ SLR E ++ + + +G ++ Y +++I
Sbjct: 293 RSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLSRYKFYSAVINSK 352
Query: 304 YMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY +LL +E EL L E + Q R ++GAID T+ET+I
Sbjct: 353 ARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERGAIDFDTVETQII 412
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
+ E I+ + D A RL+ E M++ A A + + P+R + D
Sbjct: 413 LDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTSPFRVHSEPKEDR 468
Query: 416 SA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV------------ 446
AH G V A+ +++ R D R
Sbjct: 469 METLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMTLRSMNQAVYSIN 528
Query: 447 --RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
H L Y FTSPIRRY DL+ H +K+ +
Sbjct: 529 NDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSII 563
>gi|365156006|ref|ZP_09352345.1| ribonuclease R [Bacillus smithii 7_3_47FAA]
gi|363627786|gb|EHL78636.1| ribonuclease R [Bacillus smithii 7_3_47FAA]
Length = 774
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 160/343 (46%), Gaps = 50/343 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + NR+DL + + ID +A +LDDA++ +L +G K+ +H+AD + Y++ GS D
Sbjct: 244 ESEIRNRRDLRNELIVTIDGPDAKDLDDAVTVTKLDNGHYKLGVHIADVSYYVKEGSPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ + ++ G + + + S
Sbjct: 304 REAFERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINEQGEVVSHEIFES 363
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKI-----------LSEAAALRLQWRLQQGAIDT 347
+I+ T +TYE +L ++++ EL+ ++E A + R+++GAID
Sbjct: 364 VIRTTERMTYEDVNAIL---VDKDEELRKRYEPLVPMFERMAELAEILRNKRMKRGAIDF 420
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E+++ V E+ +P+ + E A RL+ E M+ E +A + + ++ YR
Sbjct: 421 DFKESKVIVD--ENGKPVDVVLRERSV--AERLIEEFMLAANETVAEHFHWLDVPFIYRI 476
Query: 408 QPQSNID-------------------------------VSAFAHLPEGPVRSSAIVKIMR 436
D + A PE V S+ +++ M+
Sbjct: 477 HEDPKEDKLQRFFEFITNFGLVVKGTANSVHPRALQEIIEAVQGKPEEMVVSTVMLRSMQ 536
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A + + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 537 QAKY-YPESLGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYL 578
>gi|381179008|ref|ZP_09887872.1| ribonuclease II [Treponema saccharophilum DSM 2985]
gi|380769104|gb|EIC03079.1| ribonuclease II [Treponema saccharophilum DSM 2985]
Length = 638
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 178/388 (45%), Gaps = 44/388 (11%)
Query: 194 YAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTA 253
YAID +++ DDA+ DG +++H+ADP + P S DK A RG ++++P
Sbjct: 271 YAIDNAWSNDPDDAIG----WDGEF-LWVHIADPASAVSPDSKIDKIARDRGATLYIPEG 325
Query: 254 TYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATE 313
T M +E +L E A++ + L DGS+ V +I+ +YE A E
Sbjct: 326 TSMMLAPN-CLENYALGLSEESKALSFKIRLADDGSVDSCEVLRTIVS-VKRYSYEQADE 383
Query: 314 LLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQ 373
L +E ELK L E + R ++GA+ E I V +PE + +E
Sbjct: 384 L-----KESPELKPLFEIGRRNFERRCRRGAVSIEIPEVHITV----EPE-TKKVSIEPT 433
Query: 374 ADP-AMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIV 432
P + +V E M+L GE A + N + P+ Q I + +PEG +
Sbjct: 434 PHPESAEVVREAMLLAGEGAALFAFRNKIPFPFIAQEIPEIP----SDIPEGLAGQFRLR 489
Query: 433 KIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES--------P 484
+ MR + P HG LGL Y Q TSP+RRY DL++H Q+++ +RGE
Sbjct: 490 RCMRRRNVGL-SPSPHGGLGLSMYSQVTSPLRRYGDLISHQQLRSFIRGEKMIDKDEMLM 548
Query: 485 PFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAA 544
SAG+ AS ++ S +W + +L + P +++ A+ + +D
Sbjct: 549 RMSAGEAAAQAS---------KKAERNSRMHWTLVYLLQNPG-KEFDAVCVDRSRD-VPQ 597
Query: 545 LLLVEVGLQAAAWVSVGAQIGDEVEVKV 572
+ E+GL+ ++ A + D V VKV
Sbjct: 598 FFIPEIGLEIQ--LASEAALNDVVRVKV 623
>gi|418091717|ref|ZP_12728859.1| ribonuclease R [Streptococcus pneumoniae GA44452]
gi|418107367|ref|ZP_12744405.1| ribonuclease R [Streptococcus pneumoniae GA41410]
gi|421272627|ref|ZP_15723471.1| ribonuclease R [Streptococcus pneumoniae SPAR55]
gi|353763817|gb|EHD44367.1| ribonuclease R [Streptococcus pneumoniae GA44452]
gi|353779550|gb|EHD60014.1| ribonuclease R [Streptococcus pneumoniae GA41410]
gi|395875736|gb|EJG86814.1| ribonuclease R [Streptococcus pneumoniae SPAR55]
Length = 765
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ EA+A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANEAVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|417915156|ref|ZP_12558777.1| ribonuclease R [Streptococcus mitis bv. 2 str. SK95]
gi|342835270|gb|EGU69521.1| ribonuclease R [Streptococcus mitis bv. 2 str. SK95]
Length = 784
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + +L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNGILAGDEEKRREYKKIVPSIELMVKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAAKYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|333377320|ref|ZP_08469055.1| ribonuclease R [Dysgonomonas mossii DSM 22836]
gi|332884640|gb|EGK04897.1| ribonuclease R [Dysgonomonas mossii DSM 22836]
Length = 718
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 164/377 (43%), Gaps = 48/377 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ + + ID +A + DDALS +L++GR +V +H+AD T Y++ G DK+ R
Sbjct: 262 REDMRNTTTFTIDPRDAKDFDDALSIKQLKNGRWEVGVHIADVTHYVQEGDTIDKEGESR 321
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TS++L T PM PE+L+ SLR E +V L + +I ++ + ++I
Sbjct: 322 ATSIYLVDRTIPMLPERLSNNLCSLRPHEDKLCYSVIFELDDEANIKKHRITRTVIHSDR 381
Query: 305 MLTYESATELL---HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
TYE A +++ + +E+ L++ A LR + R GAI E R ++
Sbjct: 382 RFTYEEAQDIIEGAEGDFKEDI-LQLNDLAKKLRAK-RFNDGAIAFDRHEVRFEIDEKGK 439
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYRGQPQSNID-- 414
P + Y +D + +L+ E M+L + +A + + N YR N +
Sbjct: 440 PLSVYFKYAKD----SNKLIEEFMLLANKTVAEFVGNVPKNKNAKTFVYRIHDIPNTEKM 495
Query: 415 -----------------------VSAFAHL-------PEGPVRSSAIVKIMRAAAIDFRK 444
A HL PE + S+ ++ M A AI
Sbjct: 496 KNLSEFIRRFGYKIKVDGTKTNVSKAINHLLDEVSGKPEENLISTIAIRAM-AKAIYSTV 554
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRI 504
+ H L Y FTSPIRRY D++ H + L G + EG + ++
Sbjct: 555 NIGHYGLAFEYYTHFTSPIRRYPDMMVHRLLTRYLDG-GRSVNKHLYEGKCEHSSEMEQL 613
Query: 505 ARRLSNTSLRYWIIEFL 521
A S++Y +E++
Sbjct: 614 AANAERASIKYKQVEYM 630
>gi|385799512|ref|YP_005835916.1| RNAse R [Halanaerobium praevalens DSM 2228]
gi|309388876|gb|ADO76756.1| RNAse R [Halanaerobium praevalens DSM 2228]
Length = 715
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 119/464 (25%), Positives = 205/464 (44%), Gaps = 67/464 (14%)
Query: 128 AVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH--KDISNFLQK------AE 179
A + P+G+ ++ D++ A I+ +PG E D K+I+N + E
Sbjct: 185 AKNRNPEGEITEILGDKDDAGVDIEAIIRQLNLPG-EFPDKVLKEIANIPDQINEKSVTE 243
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ R+DL LK+ ID +A +LDDA+S +L + ++ +H+AD + Y+ S D+
Sbjct: 244 DD--EREDLRELKLVTIDGADAKDLDDAVSLEKLSENNYRLGVHIADVSHYVTEASPLDQ 301
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL------HSDGSIAEY 293
+A R TS++L PM P+KL+ SL + +T+SV + + I ++
Sbjct: 302 EAYARATSIYLVDRVIPMLPQKLSNGLCSLNPQ--VDRLTMSVFIEYNLIGQDEIEIIDH 359
Query: 294 SVDNSIIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQWRLQQGAI 345
+ S+I + LTY+ +L E EL++++E + R ++G++
Sbjct: 360 KITKSVINSNHRLTYDQVQNILESKESAERKEYSDFVEELEMMNELRRRLRKNRFEEGSM 419
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
D E ++++ + +P INL + A +L+ E MI +A ++ + Y
Sbjct: 420 DFNFTEVKVELDDSGNP---INLKKRSHRE-AEQLIEEFMIAANRIVAAEMAWREMPFIY 475
Query: 406 RGQPQSNID----VSAFAH--------LPEG-----------PVRSSAIVKIMRAA---- 438
R + ++D + F H + G VR S KI+
Sbjct: 476 RVHEEPDLDRMKQFNEFIHNFDYRLKGIKNGVHPRALQAILEDVRGSKEEKIIETVMLRS 535
Query: 439 ---AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC-----LRGESPPFSAGQ 490
A+ K + H LG+ Y FTSPIRRY DL+AH +K L E Q
Sbjct: 536 LKKAVYSEKNIGHFGLGISHYSHFTSPIRRYPDLIAHRIIKETITAGYLSEERQDELENQ 595
Query: 491 LEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
+ +A ++Q R A S+ IEF+ Q E ++ +I
Sbjct: 596 IPKIADHCSLQERRAMDAERDSVDLKKIEFMEDQIGE-EFEGII 638
>gi|388579460|gb|EIM19783.1| RNB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 1250
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 112/435 (25%), Positives = 192/435 (44%), Gaps = 68/435 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +NR+DL + + + ID D A +LDDA+S +DG + + +AD + +I+P S D
Sbjct: 666 EQEYMNRRDLRNERTFTIDPDTAKDLDDAVSIKLNEDGTYDITVSIADVSYFIKPNSALD 725
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
KDA KR TSV+L PM P L+ + SL + A +V+ + D + + +
Sbjct: 726 KDARKRATSVYLVQRAVPMLPSVLSSDLCSLLPDKERLAFSVTFTMTKDAKVIKTWYGRT 785
Query: 299 IIKPTYMLTYESATEL---------------LHLNLEEEAELKILSEAAALRLQWRLQQG 343
IIK L+Y++A + LH + E E ++K+L + + Q R G
Sbjct: 786 IIKSCAQLSYQNAQNVIEGKSLDAAKEKLSDLHSSDEIEGDIKVLFDLSRKLRQRRFDNG 845
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN---- 399
A+ +++ ++ D + V Q+ A L+ E M+L ++A+ + N
Sbjct: 846 ALKIDSMKLSFQL----DDNGVPIDCVAYQSREANNLIEEFMLLTNMSVASQIAVNLPEQ 901
Query: 400 --------------------------NLALPYRGQPQSNI----DVSAFAHLPEGPVRSS 429
++ + G Q + D A + L V+
Sbjct: 902 SLLRRHEDPIDRKLEGFKERAKDLGFDMDISSSGALQKSFSDIKDKEASSMLQVLAVKGM 961
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR-GESP--PF 486
K + AID +H L +P Y FTSPIRRY D++ H Q+ L+ GE F
Sbjct: 962 CRAKYFCSGAIDI-SAYKHYALNVPLYTHFTSPIRRYADVIVHRQLDTVLQFGEDAENKF 1020
Query: 487 SAGQLEGMASIV---NMQTRIARRLSNTSLRYW----IIEFLRR-QPKERQYRALILRFI 538
G+ E +A I N++ +++ +S + I + RR P RQ A ++ +
Sbjct: 1021 GTGERETIAKIAQQCNIKKDASKQAQESSQHLYLCLLISDLTRRYGPVVRQ--ATVIGVL 1078
Query: 539 KDRTAALLLVEVGLQ 553
DR +L+ ++G++
Sbjct: 1079 -DRAFDVLVNDMGIE 1092
>gi|414158338|ref|ZP_11414632.1| ribonuclease R [Streptococcus sp. F0441]
gi|410870883|gb|EKS18840.1| ribonuclease R [Streptococcus sp. F0441]
Length = 784
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 160/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L + R ++GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHETLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|417923309|ref|ZP_12566778.1| ribonuclease R [Streptococcus mitis SK569]
gi|342837113|gb|EGU71312.1| ribonuclease R [Streptococcus mitis SK569]
Length = 784
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 159/342 (46%), Gaps = 45/342 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSTL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYQKIVPSIELMAKLHEILESMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + S NL YR
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEHFSKLNLPFIYRIH 476
Query: 407 -----GQPQSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F + + A+ IMR + V
Sbjct: 477 EEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRTVEGEPYADVLSMMLLRSMQQ 536
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 537 ARYSEQNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|312870296|ref|ZP_07730424.1| ribonuclease R [Lactobacillus oris PB013-T2-3]
gi|311094180|gb|EFQ52496.1| ribonuclease R [Lactobacillus oris PB013-T2-3]
Length = 786
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 48/333 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD+T+ + ID E+ +LDDA+ A ++ +G + +H+AD + Y++PG+ DK+A KR
Sbjct: 257 RKDITNQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVSHYVQPGTPLDKEAFKR 316
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P++L+ SL GE A++ + + G + ++ + S++K
Sbjct: 317 GTSVYLTDRVVPMLPKRLSNGICSLNPGEERLAMSCEMEIDEQGRVVKHRIFPSVMKSHA 376
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY++ +L + ++ + + + E + L+ R ++GAID E +I V
Sbjct: 377 RMTYKAVNRILEAHDQKTIDQYKDLVPMFETMGELHKILLKSRKRRGAIDFEAPEAKIIV 436
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
+ P I++ + D+ A R++ M+ E +A + ++ YR + D V
Sbjct: 437 DDKGHP---IDIQLRDRG-LAERMIESFMLAANETVAEHYFNEHVPFLYRIHETPDKDRV 492
Query: 416 SAF----------AHLPEGPVRSSAIVKIMRAAAIDFRKP-------------------- 445
AF H V+ + K+++ A KP
Sbjct: 493 KAFVDFLNVFGIDVHGDINNVKPKMLQKVLKDVA---GKPEEQMVQVMMLRSMQQAKYSD 549
Query: 446 --VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+ H LG Y FTSPIRRY D H +K
Sbjct: 550 EELGHFGLGAKYYTHFTSPIRRYPDDTVHRLIK 582
>gi|56708581|ref|YP_170477.1| ribonuclease R [Francisella tularensis subsp. tularensis SCHU S4]
gi|110671052|ref|YP_667609.1| ribonuclease R [Francisella tularensis subsp. tularensis FSC198]
gi|254371210|ref|ZP_04987212.1| hypothetical protein FTBG_00979 [Francisella tularensis subsp.
tularensis FSC033]
gi|254875443|ref|ZP_05248153.1| ribonuclease R [Francisella tularensis subsp. tularensis MA00-2987]
gi|379717811|ref|YP_005306147.1| 3'-to-5' exoribonuclease RNase R [Francisella tularensis subsp.
tularensis TIGB03]
gi|379726414|ref|YP_005318600.1| 3'-to-5' exoribonuclease RNase R [Francisella tularensis subsp.
tularensis TI0902]
gi|385795274|ref|YP_005831680.1| Ribonuclease R [Francisella tularensis subsp. tularensis NE061598]
gi|421756214|ref|ZP_16193137.1| ribonuclease R [Francisella tularensis subsp. tularensis 80700075]
gi|56605073|emb|CAG46186.1| Ribonuclease R [Francisella tularensis subsp. tularensis SCHU S4]
gi|110321385|emb|CAL09569.1| Ribonuclease R [Francisella tularensis subsp. tularensis FSC198]
gi|151569450|gb|EDN35104.1| hypothetical protein FTBG_00979 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841442|gb|EET19878.1| ribonuclease R [Francisella tularensis subsp. tularensis MA00-2987]
gi|282159809|gb|ADA79200.1| Ribonuclease R [Francisella tularensis subsp. tularensis NE061598]
gi|377827863|gb|AFB81111.1| 3'-to-5' exoribonuclease RNase R [Francisella tularensis subsp.
tularensis TI0902]
gi|377829488|gb|AFB79567.1| 3'-to-5' exoribonuclease RNase R [Francisella tularensis subsp.
tularensis TIGB03]
gi|409085304|gb|EKM85449.1| ribonuclease R [Francisella tularensis subsp. tularensis 80700075]
Length = 765
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 150/348 (43%), Gaps = 47/348 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
M A G L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|422938412|ref|YP_007011559.1| ribonuclease R [Francisella tularensis subsp. holarctica FSC200]
gi|407293563|gb|AFT92469.1| ribonuclease R [Francisella tularensis subsp. holarctica FSC200]
Length = 750
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 152/347 (43%), Gaps = 45/347 (12%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVVIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV 446
P+R + D AH G V A+ +++ R D R
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMT 543
Query: 447 --------------RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
H L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|313149833|ref|ZP_07812026.1| ribonuclease R [Bacteroides fragilis 3_1_12]
gi|313138600|gb|EFR55960.1| ribonuclease R [Bacteroides fragilis 3_1_12]
Length = 714
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 165/375 (44%), Gaps = 44/375 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS L++G +V +H+AD T Y++ GS+ DK+A KR
Sbjct: 259 REDFRKVTTFTIDPKDAKDFDDALSIRPLKNGLWEVGVHIADVTHYVKEGSIIDKEAEKR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G + + + +++I+
Sbjct: 319 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSAIFDITEKGEVRDSRIVHTVIESDR 378
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ + + E+ +L A + R GAI+ E + ++ P
Sbjct: 379 RFTYEEAQQIIETKEGDFKDEILMLDTIAKALREKRFAAGAINFDRYEVKFEIDEKGKP- 437
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQ---- 410
I++Y ++ D A +LV E M+L +A LPYR P+
Sbjct: 438 --ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGKVPKGKKAKVLPYRIHDLPDPEKLDN 494
Query: 411 ----------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAIDFRKPV 446
+ DVS + HL E + + ++ M+ A +
Sbjct: 495 LAQFIARFGYRLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSTHN-I 553
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIAR 506
H L Y FTSPIRR+ D++ H V + G S + E + + +IA
Sbjct: 554 GHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDG-GRSVSETKYEDLCDHSSNMEQIAA 612
Query: 507 RLSNTSLRYWIIEFL 521
S++Y +EF+
Sbjct: 613 NAERASIKYKQVEFM 627
>gi|212696115|ref|ZP_03304243.1| hypothetical protein ANHYDRO_00651 [Anaerococcus hydrogenalis DSM
7454]
gi|212676744|gb|EEB36351.1| hypothetical protein ANHYDRO_00651 [Anaerococcus hydrogenalis DSM
7454]
Length = 700
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 169/373 (45%), Gaps = 43/373 (11%)
Query: 174 FLQKAED--NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
F++K D + NR+DL L ID ++ + DDA+S + + I +Y+H+AD + Y+
Sbjct: 232 FIEKDVDLSKVKNREDLRDLFTVTIDGRDSKDFDDAISIEKDNEDYI-LYVHIADVSHYV 290
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
+ S DK+A +RG S +L PM PE+L+ SL E ++++ + ++ G +
Sbjct: 291 KEKSEIDKEAYQRGNSTYLYNLVLPMLPEELSNGICSLNPNENRLSLSLKMKINDKGKVI 350
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN---LEEEA---ELKILSEAAALRLQWRLQQGAI 345
+Y + ++I+ Y L Y+ + L N ++E +L + ++ + + R ++G+I
Sbjct: 351 DYKIYKALIRSNYRLVYDDVNDYLDYNKKVYDDEVLLEKLDLFNDLYKILKKKREKRGSI 410
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF------- 398
D E++I V+N D ++N+ + ++ A +++ E M++ E IA+ +F
Sbjct: 411 DFNFTESQIDVSNQGD---VLNISLFERG-SANKMIEEFMLVSNETIASLFAFMDFPSIY 466
Query: 399 ------------------NNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAI----VKIMR 436
N L +G+ D +G S I ++ MR
Sbjct: 467 RIHEKPKEEKVESFKNILNTLGYNIKGKELHPKDFQDILKQIKGKDDESLINMLMLRTMR 526
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMAS 496
A + + G L Y FT+PIRRY DL+ H VK + + + LE S
Sbjct: 527 KAKYTNYRDMHFG-LATKYYTHFTAPIRRYPDLIVHRLVKDFIDNKLESINQTSLEKKLS 585
Query: 497 IVNMQTRIARRLS 509
I R S
Sbjct: 586 KFAEHLSITERNS 598
>gi|423230707|ref|ZP_17217111.1| ribonuclease R [Bacteroides dorei CL02T00C15]
gi|423244418|ref|ZP_17225493.1| ribonuclease R [Bacteroides dorei CL02T12C06]
gi|392630357|gb|EIY24350.1| ribonuclease R [Bacteroides dorei CL02T00C15]
gi|392641992|gb|EIY35764.1| ribonuclease R [Bacteroides dorei CL02T12C06]
Length = 715
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 175/384 (45%), Gaps = 48/384 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R+D ++ + ID +A + DDALS ++ G +V +H+AD T Y++ GS+
Sbjct: 252 SEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGSVI 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + + +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDSRIVH 371
Query: 298 SIIKPTYMLTYESATELLHLN----LEEEAELKILSEAAALRLQWRLQQGAIDTATLETR 353
+IIK TYE A +++ EE EL L++ LR Q RL GAID +E +
Sbjct: 372 TIIKSDRRFTYEEAQKVIETGEGDYKEEILELNKLTQ--ILRKQ-RLAAGAIDFDRIEVK 428
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT-YGSF--NNLA--LPYR-- 406
++ P +++Y ++ + A +L+ E M+L +A G N A PYR
Sbjct: 429 FEIDETGKP---LSVYFKESKE-ANKLIEEFMLLANRTVAERIGKVPKNKKAKVFPYRIH 484
Query: 407 --GQPQSNIDVSAFAHLPEGPVRSSA-----------------------IVKIMRAAAID 441
P +++ F + +R+S +V+ + A+
Sbjct: 485 DLPDPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQ 544
Query: 442 FRKPVRHGV----LGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASI 497
+ H + L Y FTSPIRR+ D++ H + L G + E +
Sbjct: 545 KARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRYLAG-GRTVQETKYEELCDH 603
Query: 498 VNMQTRIARRLSNTSLRYWIIEFL 521
+ +IA S++Y +EF+
Sbjct: 604 SSEMEQIAANAERASVKYKQVEFM 627
>gi|254368793|ref|ZP_04984806.1| ribonuclease R [Francisella tularensis subsp. holarctica FSC022]
gi|157121714|gb|EDO65884.1| ribonuclease R [Francisella tularensis subsp. holarctica FSC022]
Length = 750
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 150/348 (43%), Gaps = 47/348 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAYKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
M A G L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|423050291|ref|YP_007008725.1| ribonuclease R [Francisella tularensis subsp. holarctica F92]
gi|421951013|gb|AFX70262.1| ribonuclease R [Francisella tularensis subsp. holarctica F92]
Length = 750
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 146/335 (43%), Gaps = 43/335 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+E S D DA +
Sbjct: 260 NRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYVEKDSALDLDAKR 319
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+ P PM PEKL+ SLR E ++ + + +G ++ Y +++I
Sbjct: 320 RSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLSRYKFYSAVINSK 379
Query: 304 YMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY +LL +E EL L E + Q R ++GAID T+ET+I
Sbjct: 380 ARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERGAIDFDTVETQII 439
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
+ E I+ + D A RL+ E M++ A A + + P+R + D
Sbjct: 440 LDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTSPFRVHSEPKEDR 495
Query: 416 SA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV------------ 446
AH G V A+ +++ R D R
Sbjct: 496 METLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMTLRSMNQAVYSIN 555
Query: 447 --RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
H L Y FTSPIRRY DL+ H +K+ +
Sbjct: 556 NDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|309800258|ref|ZP_07694434.1| ribonuclease R [Streptococcus infantis SK1302]
gi|308116111|gb|EFO53611.1| ribonuclease R [Streptococcus infantis SK1302]
Length = 780
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G ++ +H+AD + Y+ GS
Sbjct: 243 SEKDIEGRLDLRDEITFTIDGADAKDLDDAVHIKSLKNGNFELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKNGRVRNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYQKIVQSIELMAKLHEILENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDIVLRH----RGTAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|225621232|ref|YP_002722490.1| exoribonuclease R [Brachyspira hyodysenteriae WA1]
gi|225216052|gb|ACN84786.1| exoribonuclease R [Brachyspira hyodysenteriae WA1]
Length = 580
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 156/330 (47%), Gaps = 42/330 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL +LK ID + + +LDDA S + D KVY+H++D + +IE S D +A
Sbjct: 131 DRVDLRNLKTITIDSESSKDLDDAFSIEK-TDNNYKVYVHISDVSHFIELDSPLDLEARA 189
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG S +L Y MFPE L+ +SL + E A+T +++DG I SV S+I+
Sbjct: 190 RGNSTYLIDKVYNMFPEVLSNNIISLNENEDRFALTFITDINNDGEILSSSVCKSVIRSD 249
Query: 304 YMLTYESATELLHLNLEEEAE----LKILSEAAALR--LQWRLQQG-AIDTATLETRIKV 356
L+Y+ A +L+ +EE++ L+++ A ++ L + ++G ++ + +I +
Sbjct: 250 RKLSYDYAEKLIK---KEESDEDWLLELIDNALNIKNVLYKKRKEGRGVEFENQDIKIVL 306
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSFNNLALPYRG-------- 407
+ P I Y E++ + +M ++ E+M+L +A S++ + Y G
Sbjct: 307 NDEGMP---IEFYAEEKKE-SMAIIEELMLLANSKVAEKLSSYDGVIFRYHGLPDEYRFN 362
Query: 408 ---------------QPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV---RHG 449
P D+ F +G + ++ ++ + + H
Sbjct: 363 NFKILAHTKGYELKENPDKTYDIKGFIGNVKGKQEENLLIPVLLRSMTPSSYSIVNKSHF 422
Query: 450 VLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
LGL Y FTSPIRRY DLL H VK +
Sbjct: 423 GLGLDYYTYFTSPIRRYADLLIHRIVKDTI 452
>gi|422847110|ref|ZP_16893793.1| ribonuclease R [Streptococcus sanguinis SK72]
gi|325687303|gb|EGD29325.1| ribonuclease R [Streptococcus sanguinis SK72]
Length = 782
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKEIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM + + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMESVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
+G GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNYGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|291522313|emb|CBK80606.1| RNAse R [Coprococcus catus GD/7]
Length = 721
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 168/372 (45%), Gaps = 50/372 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL ID ++A +LDDA++ + ++DG + +H+AD T Y++ GS DK+A+K
Sbjct: 254 GRRDLRDRMTVTIDGEDAKDLDDAIT-LEMKDGHYFLGVHIADVTHYVKEGSPLDKEALK 312
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P L+ SL +G A++ + L G I + + S+I+
Sbjct: 313 RGTSVYLVNKVIPMLPHALSNGICSLNEGVDRLALSCLMELDERGGIIGHEITESVIRVN 372
Query: 304 YMLTYESATELLHLNLEEEA----------ELKILSEAAALRLQWRLQQGAIDTATLETR 353
+ ++Y + +L + E E+K LS+ L + R ++G ID E++
Sbjct: 373 HRMSYNQVSRILDGDKELTVVYADAVKMFKEMKTLSD---LLRKKRKERGGIDFDFPESK 429
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
I++ + + P ++++ D+ +PA +++ + M++ E IA + L YR +
Sbjct: 430 IELDDRDFP---VDIHPYDR-NPATKIIEDFMLMANETIAEDFFWQELPFLYRSHESPDT 485
Query: 414 D-------------------------------VSAFAHLPEGPVRSSAIVKIMRAAAIDF 442
D + PE + S +++ M+ A
Sbjct: 486 DRIKRLMILIKNYGYYMNIRQDSIHPMEFQKLLGKIEGTPEETMISRLVLRSMKQARYT- 544
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQT 502
+ + H L + Y FTSPIRRY DL H +K L G+ + V +QT
Sbjct: 545 TENLGHFGLAVSYYCHFTSPIRRYPDLQIHRIIKENLHGQLDDGRQAHYHHILPDVAVQT 604
Query: 503 RIARRLSNTSLR 514
R ++ + R
Sbjct: 605 SSTERRADEAER 616
>gi|325982013|ref|YP_004294415.1| ribonuclease R [Nitrosomonas sp. AL212]
gi|325531532|gb|ADZ26253.1| ribonuclease R [Nitrosomonas sp. AL212]
Length = 741
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 157/360 (43%), Gaps = 47/360 (13%)
Query: 161 PGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-IK 219
P +++ K N L+K +L RKDL HL + ID + A + DDA+ DG+ +
Sbjct: 247 PDIQELSIKFPKNVLKK---DLSGRKDLCHLPLITIDGETAKDFDDAVFCT--NDGKGYR 301
Query: 220 VYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVT 279
+Y+ +AD + Y++P L D++A RG SV+ P PM PE L+ SL + +
Sbjct: 302 LYVAIADVSHYVKPHDLIDREAFNRGNSVYFPRRVIPMLPEVLSNGLCSLNPDKKRLCMV 361
Query: 280 VSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEA 331
+ ++G I YS +++ LTY T +L EA+ L+++ +
Sbjct: 362 CEIQFQANGDILNYSFYPAVMLSRARLTYTQVTAMLDDTKSCEAQEYAELLPHLQLIYKL 421
Query: 332 AALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEA 391
L+ R ++GAID T ET++ N E I+ + Q A RL+ E M+
Sbjct: 422 FKSLLKARKKRGAIDFETTETQMFFNNQGKIEKILPV----QRTEAHRLIEECMLAANVC 477
Query: 392 IATYGSFNNLALPYRGQ----PQSNIDVSAF----------AHLPEGPVRSSAIVKI--- 434
A + + YR P+ + F + P + ++KI
Sbjct: 478 AADFLQKHGQTTLYRIHESPTPEKIDTLRNFLKEFGIQLGGKNKPSAQDYAQTLLKIKDR 537
Query: 435 ----------MRAAAIDFRKPVRHGVLGLP--GYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+R+ P G GL Y FTSPIRRY DLL H +KA L+GE
Sbjct: 538 SDAQLLQTVMLRSLQQAIYSPDLTGHFGLAYDAYTHFTSPIRRYPDLLVHRAIKAVLKGE 597
>gi|198274471|ref|ZP_03207003.1| hypothetical protein BACPLE_00619 [Bacteroides plebeius DSM 17135]
gi|198272673|gb|EDY96942.1| ribonuclease R [Bacteroides plebeius DSM 17135]
Length = 716
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 166/376 (44%), Gaps = 46/376 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS L+ G +V +H+AD + YI+ GS+ DK+A KR
Sbjct: 260 REDFRDVVTFTIDPKDAKDFDDALSIRTLKPGLWEVGVHIADVSHYIKEGSIIDKEAAKR 319
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A +V ++ + Y + +++IK
Sbjct: 320 ATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEMNEKAEVKNYRIRHTVIKSNR 379
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ + + E+ L+ A + + R+ G+I+ E + ++ P
Sbjct: 380 RFTYEEAQQIIETGEGDYKEEVLQLNRLAQILREKRMAAGSINFDRCEVKFEIDETGKP- 438
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR------------ 406
+++Y + + A +L+ E M+L + +A Y + LPYR
Sbjct: 439 --LSVYFK-VSKEANKLIEEFMLLANKTVAEYVGKVPKNKKPKVLPYRIHDLPDPDKLDN 495
Query: 407 --------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGV-- 450
G ++ + S HL G + ++ ++ + R+ +
Sbjct: 496 LNQFIARFGYKIRTGGSKAEVSKS-INHLL-GEIEGKKEQNLIETVSLRAMQKARYSIYN 553
Query: 451 -----LGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIA 505
L Y FTSPIRRY DL+ H + L G A + E + + + A
Sbjct: 554 IGHYGLAFDYYTHFTSPIRRYPDLMVHRLLTRYLAGGRSA-QADKYETLCEHSSAMEQTA 612
Query: 506 RRLSNTSLRYWIIEFL 521
S++Y +EF+
Sbjct: 613 ASAERASVKYKQVEFM 628
>gi|347549752|ref|YP_004856080.1| putative exoribonuclease RNase-R [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982823|emb|CBW86851.1| Putative exoribonuclease RNase-R [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 793
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 179/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQVIITIDGADAKDLDDAVTVQQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + +DG + ++ + SII
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDADGHVVKHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAAIVPMLEAMQNLAEILRTKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|373855819|ref|ZP_09598565.1| ribonuclease R [Bacillus sp. 1NLA3E]
gi|372454888|gb|EHP28353.1| ribonuclease R [Bacillus sp. 1NLA3E]
Length = 776
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 152/342 (44%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + NR+DL + + ID +A +LDDA+ +L++G K+ +H+AD T Y+ GS D
Sbjct: 243 ESEIANRRDLRNEVIVTIDGADAKDLDDAVQVSKLENGHYKLGVHIADVTYYVTEGSPID 302
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A RGTSV+L PM P +L+ SL ++ ++ + DG + + + S
Sbjct: 303 LEARDRGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCTMEITPDGEVVHHEIFQS 362
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L EE + + + E A + + R+ +GAID
Sbjct: 363 VIKTTERMTYSDVNKILTDKDEELLKRYEPLVPMFETMEELAEVLRKKRMHRGAIDFDFK 422
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V P + V + A +L+ E M+ E +A + + + YR
Sbjct: 423 EAKVLVDEEGKPTDV----VLRERSVAEKLIEEFMLAANETVAEHFHWLEVPFIYRIHED 478
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
D ++ F ++ PE V S+ +++ M+ A
Sbjct: 479 PKEDKLRRFFEFITNFGYIVKGTANSVHPRALQEIIEEVRGKPEEMVISTVMLRSMQQAK 538
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 539 YD---PESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 577
>gi|269104707|ref|ZP_06157403.1| exoribonuclease II [Photobacterium damselae subsp. damselae CIP
102761]
gi|268161347|gb|EEZ39844.1| exoribonuclease II [Photobacterium damselae subsp. damselae CIP
102761]
Length = 667
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 107/421 (25%), Positives = 184/421 (43%), Gaps = 66/421 (15%)
Query: 112 KGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVT----FVVPGVEKFD 167
KG+ E K+ D V+ + + P +V D C + +++T + P
Sbjct: 116 KGVNPETLKEGDWVVAKITRHP------LVGDNKTFFCEVS-EKITDSNDKIAPWWVTLA 168
Query: 168 HKDISNFLQKAEDNL------LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVY 221
H D+ N +D+ L R+DLT L ID D ++DDAL ++ DG ++
Sbjct: 169 HHDLPNAEPAPQDSWNMIDEGLERQDLTELPFITIDGDSTKDMDDALYTVQKDDGSFEIT 228
Query: 222 IHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVS 281
I +ADPT YI G D +A +RG +++LP PM P +L+ E SL +GE A+
Sbjct: 229 IAIADPTSYISVGDKMDDEARERGFTIYLPGRNIPMLPRELSDELCSLIEGEKRPAICCQ 288
Query: 282 VVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELL---HLNLEE-----EAELKILSEAA 332
V +++ G I + S + I+ L+Y++ ++ L H + + E ++K L A
Sbjct: 289 VTVNAQGEIQDDISFFAAWIQSQGRLSYDNVSDYLENGHCDNWQPTPVIEEQIKALHAFA 348
Query: 333 ALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG 389
R +WR I + R +++ D ++ ++ D A R++ E MI +C
Sbjct: 349 NARTEWRQNNAVIFPDRPDYRFELSADND---VVAIHT-DFRRTANRMIEEAMITANICA 404
Query: 390 EAIAT----YGSFNNLALPYRGQPQSNIDVS-AFAHLPEGPVRSSAIVKI---------- 434
+ + G FN + G +D + F E P ++ +
Sbjct: 405 GRVLSDKFGTGVFN----LHSGFNLEKLDTAMEFLTKAEAPFSKEEVISLEGFSALRRWL 460
Query: 435 --MRAAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
++ +D R KP H +GL Y +TSPIR+Y D++ H +K+ +
Sbjct: 461 NQQESSYLDNRLRKFQAYSEVGNKPGPHYAMGLDVYATWTSPIRKYGDMINHRLLKSVIT 520
Query: 481 G 481
G
Sbjct: 521 G 521
>gi|229916580|ref|YP_002885226.1| ribonuclease R [Exiguobacterium sp. AT1b]
gi|229468009|gb|ACQ69781.1| ribonuclease R [Exiguobacterium sp. AT1b]
Length = 801
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 157/341 (46%), Gaps = 58/341 (17%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + + R DL ++ ID ++A +LDDA+ +L +G ++ +H+AD + Y++ GS D
Sbjct: 240 EKDFIGRVDLRDETIFTIDGEDAKDLDDAVHVKKLDNGNYELGVHIADVSHYVKEGSPLD 299
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH---SDGSIAEYSV 295
+A +RGTSV+L PM P +L+ SL N +T+S V+ +G + + +
Sbjct: 300 VEAFERGTSVYLVDRVIPMLPHRLSNGICSLNPH--VNRLTLSCVMEISPQNGKVVRHDL 357
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQWRLQQGAIDT 347
S+IK T +TY + E++ + EE E +++E A + + R +GAI+
Sbjct: 358 FPSVIKTTERMTYTNVREIIERDDEETLKKYEPFIGEFDLMAELAEVLRKRRNSRGAINF 417
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--Y 405
E ++ V P I V A +L+ E M+ E +A + F+ + +P Y
Sbjct: 418 DFAEAKVVVNEEGKPADI----VLRPRSVAEKLIEEFMLAANETVAEH--FHKMDVPFIY 471
Query: 406 RGQPQSNID--------VSAFA-HL-----------------------PEGPVRSSAIVK 433
R D V+ F H+ PE PV S+ +++
Sbjct: 472 RVHDNPKPDKLDFFFDFVANFGVHIERIKGQTVEPKTLQKILKAIDGEPEEPVISTIMLR 531
Query: 434 IMRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
M+ A D V G GL Y FTSPIRRY DL+ H
Sbjct: 532 SMQQAKYD---DVSLGHFGLATDFYTHFTSPIRRYPDLIVH 569
>gi|289435709|ref|YP_003465581.1| ribonuclease R [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171953|emb|CBH28499.1| ribonuclease R [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 793
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 116/436 (26%), Positives = 183/436 (41%), Gaps = 66/436 (15%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVSQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + DG + + + SII
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQDGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAELK------------ILSEAAALRLQWRLQQGAIDTA 348
K T +TY ++L +E++ L+ + + A LR + R ++GAID
Sbjct: 365 KTTERMTYTDVNDIL---VEKDEALREKYAPIVPMLEAMQNLAETLRAK-REKRGAIDFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 421 FKEARVVVDEEGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIH 476
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
D ++ F + PE V S+ +++ M+
Sbjct: 477 EDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQ 536
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQ 490
A D V G GL Y FTSPIRRY DL+ H Y +K +R E+ A +
Sbjct: 537 AKYD---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLIKGDVRPETLEKRAEE 593
Query: 491 LEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEV 550
L +A + R A + EF+ + ER + I T L +E+
Sbjct: 594 LPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIEL 648
Query: 551 GLQAAAWVSVGAQIGD 566
V V A GD
Sbjct: 649 PTTIEGLVHVSAMKGD 664
>gi|262174006|ref|ZP_06041683.1| exoribonuclease II [Vibrio mimicus MB-451]
gi|261891364|gb|EEY37351.1| exoribonuclease II [Vibrio mimicus MB-451]
Length = 672
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 168/380 (44%), Gaps = 51/380 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT + ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTAVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQKLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE----YSVDNSIIKPTYMLTYESATELLHLNLEEE 322
SL + +V A+ SV + DG I + +S + IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTISKDGVIGDDIRFFSAN---IKSHARLVYDHVSDWLETGSSEQ 331
Query: 323 AE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQA 374
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 332 WQPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSEDND---VVAIHA-DMR 387
Query: 375 DPAMRLVSEMMI---LCG----EAIATYGSFNNLA-------------LPYRGQPQSNID 414
A RLV E MI +C +A G FN A + G P ++ +
Sbjct: 388 RTANRLVEESMITANICAGKTLQATFGLGVFNTHAGFKAEKMADVVELMAAHGAPNADAE 447
Query: 415 ----VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIR 464
V FA L E + I K + I +P+ H +GL Y +TSPIR
Sbjct: 448 TLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIR 506
Query: 465 RYMDLLAHYQVKACLRGESP 484
+Y D++ H +KA + G++P
Sbjct: 507 KYGDMINHRLLKAHILGKAP 526
>gi|417848214|ref|ZP_12494163.1| ribonuclease R [Streptococcus mitis SK1073]
gi|339454961|gb|EGP67574.1| ribonuclease R [Streptococcus mitis SK1073]
Length = 784
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 161/347 (46%), Gaps = 55/347 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL ++ ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDEIIFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDKEKRQEYQKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID------------------------VSAFAHLPEGPVRSSAIVKIM 435
+P Q ID +SA P V S +++ M
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMSAVEGEPYADVLSMMLLRSM 534
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
+ A HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHN---HGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|386585725|ref|YP_006082127.1| exoribonuclease R [Streptococcus suis D12]
gi|353737871|gb|AER18879.1| exoribonuclease R [Streptococcus suis D12]
Length = 789
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 168/358 (46%), Gaps = 55/358 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DQEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNKEKLDKYKTIVPSVELMIKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TAEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
M+ A +G LG Y FTSPIRRY DLL H V+ G +P A E
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMVREY--GHNPAEKAEHFE 590
>gi|449145895|ref|ZP_21776690.1| exoribonuclease II [Vibrio mimicus CAIM 602]
gi|449078283|gb|EMB49222.1| exoribonuclease II [Vibrio mimicus CAIM 602]
Length = 672
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 168/380 (44%), Gaps = 51/380 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT + ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTAVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQKLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE----YSVDNSIIKPTYMLTYESATELLHLNLEEE 322
SL + +V A+ SV + DG I + +S + IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTISKDGVIGDDIRFFSAN---IKSHARLVYDHVSDWLETGSSEQ 331
Query: 323 AE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQA 374
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 332 WQPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSEDND---VVAIHA-DMR 387
Query: 375 DPAMRLVSEMMI---LCG----EAIATYGSFNNLA-------------LPYRGQPQSNID 414
A RLV E MI +C +A G FN A + G P ++ +
Sbjct: 388 RTANRLVEESMITANICAGKTLQATFGLGVFNTHAGFKAEKMADVVELMAAHGAPNADAE 447
Query: 415 ----VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIR 464
V FA L E + I K + I +P+ H +GL Y +TSPIR
Sbjct: 448 TLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIR 506
Query: 465 RYMDLLAHYQVKACLRGESP 484
+Y D++ H +KA + G++P
Sbjct: 507 KYGDMINHRLLKAHILGKAP 526
>gi|449070895|ref|YP_007437975.1| putative ribonuclease [Chlamydophila psittaci Mat116]
gi|449039403|gb|AGE74827.1| putative ribonuclease [Chlamydophila psittaci Mat116]
Length = 567
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 166/383 (43%), Gaps = 53/383 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 531
Query: 485 PFSAGQLEGMASIVNMQTRIARR 507
+LE + + Q RIA +
Sbjct: 532 ----TRLEHIVRACSTQERIAAK 550
>gi|384044407|ref|YP_005492424.1| Ribonuclease R [Bacillus megaterium WSH-002]
gi|345442098|gb|AEN87115.1| Ribonuclease R [Bacillus megaterium WSH-002]
Length = 780
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 160/343 (46%), Gaps = 50/343 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ NR+DL + ID +A +LDDA++ L++G K+ +H+AD + Y++ GS D
Sbjct: 244 EKDIGNRRDLRDQVIVTIDGADAKDLDDAVTVTELENGNYKLGVHIADVSHYVKEGSPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
+A +RGTSV+L PM P +L+ SL N T+S + D G + ++ +
Sbjct: 304 VEAAERGTSVYLVDRVIPMIPHRLSNGICSLNPK--VNRFTLSCEMEIDAQGEVVKHEIF 361
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEA---------ELKILSEAAALRLQWRLQQGAIDT 347
S+IK T +TY ++L ++ +EE + + + AA+ + R+ +GAID
Sbjct: 362 ESVIKTTERMTYSDVNKIL-VDKDEEVLARYEPIVPMFERMEKLAAILRKKRMDRGAIDF 420
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V + P +I + A +L+ E M+ E +A + + N+ YR
Sbjct: 421 DFKEAKVLVDDDGHPHDVILR----ERSVAEKLIEEFMLAANETVAEHFHWMNVPFIYRI 476
Query: 408 QPQSNID--------VSAFAH-----------------------LPEGPVRSSAIVKIMR 436
+ + ++ F + PE V S+ +++ M+
Sbjct: 477 HEDPDAEKLTRFLEFITNFGYTVKGTGNDIHPRALQDILEEVKGTPEEMVISTVMLRSMK 536
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
A + + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 537 QAKYE-AESLGHFGLSAEFYTHFTSPIRRYPDLIVHRLIRTYL 578
>gi|310779455|ref|YP_003967788.1| RNAse R [Ilyobacter polytropus DSM 2926]
gi|309748778|gb|ADO83440.1| RNAse R [Ilyobacter polytropus DSM 2926]
Length = 710
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 184/412 (44%), Gaps = 50/412 (12%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
+++SN + ED + RKDL +L + ID ++A +LDDA+ +L++G ++ + +AD
Sbjct: 225 REVSNVEETITEDEIKKRKDLRNLPIITIDGEDAKDLDDAVYVEKLKNGNYRLIVSIADV 284
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ YI+ G L DK+A KRG SV+L PMFP++++ SL E T + +
Sbjct: 285 SHYIQDGILLDKEAQKRGNSVYLVDRVLPMFPKEISNGVCSLNPRENKLTFTCEMEIDPS 344
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRL 340
G + + S+IK + +TY ++L + E E L + E + + +
Sbjct: 345 GKVVDSETYKSVIKTAHRMTYSGVNKILDGDEELTKEYEDIKDMLFTMLELSKILRDVKY 404
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
Q+G+ID E ++ + D E + + + A +++ + MI EA+A +
Sbjct: 405 QRGSIDFDLPEIKVVL----DSEGKVESLKKRERGEAEKIIEDFMISANEAVAEKLFWLE 460
Query: 401 LALPYRGQPQS---------------NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDF--- 442
+ YR + N + +F L P R +I++ + I
Sbjct: 461 IPSVYRTHDKPDPERIKTLNDTLAKFNYRIHSFEDLH--PKRFQSIIEDSKDKDISMIVH 518
Query: 443 ------RKPVRH-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAG 489
K R+ G GL Y FTSPIRRY DLL H + L G
Sbjct: 519 KFILMSLKQARYTVDNTGHFGLASNYYTHFTSPIRRYSDLLVHRILGTTLNGYPSKKHIA 578
Query: 490 Q----LEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
+ L+ + ++ R A ++ + S++ ++E++ + E Y A I+ F
Sbjct: 579 KWSKTLDSVCQHISKTERDAMKIEDESVKIKVVEYMMDRVGE-VYDARIVGF 629
>gi|290982053|ref|XP_002673745.1| predicted protein [Naegleria gruberi]
gi|284087331|gb|EFC41001.1| predicted protein [Naegleria gruberi]
Length = 815
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 102/437 (23%), Positives = 199/437 (45%), Gaps = 68/437 (15%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ L RKD +V+ ID A +LDDA+S +L D +V IH+AD + ++ GS D+
Sbjct: 322 EELEKRKDARGERVFTIDPKHAKDLDDAISISKLNDNLFRVGIHIADASYFVAAGSKLDR 381
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA---EYSVD 296
A +R TSV+L PM P L+ + SL + A ++ V+L ++G + E
Sbjct: 382 IAQRRATSVYLEHLIVPMLPHFLSDDICSLLPSKDRLAFSIYVLLDANGELVKDQESVFQ 441
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAELK------------------------ILSEAA 332
S+++ L+YE A +++ ++ ++E+ +L + A
Sbjct: 442 KSVVRSCAKLSYEIAQQVIGGEIKSDSEISQDICPREGDIFCPNLGGSLVEDITMLHKLA 501
Query: 333 ALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAI 392
R + RL+ G + + + RI++ ED + + ++ V+++ + + ++ E+M+L
Sbjct: 502 MKRRESRLESGTL--SLNKPRIQLELSEDNQSVKSINVKEEKE-SNNMIEELMLLANYLA 558
Query: 393 AT---YGSFNNLALPYRGQP---------------QSNIDVSAFAHLPEGPVRS------ 428
A S + + L G P + +I+V + A L + +RS
Sbjct: 559 AEKLLKSSNDTVLLRSHGSPLEKKMSDFIDFCNSAKLDINVESAAEL-DNSLRSITDTEV 617
Query: 429 SAIVKIMRAAAIDFRK-----------PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
SA+V + A+ K H L +P Y FTSPIRRY D++ H Q+++
Sbjct: 618 SAVVNLEATKAMQTAKYFAYSDKNNCLSTHHYALNVPYYTHFTSPIRRYSDIIVHRQLES 677
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRF 537
L P++ +L+ + I N ++ +A++ + + ++ P+ + I+R
Sbjct: 678 ALFASPIPYTY-ELKKLIDICNKKSTLAKKAEEQTKHIYFCRYIEENPEIAKVSG-IIRG 735
Query: 538 IKDRTAALLLVEVGLQA 554
+ +T +++ L+
Sbjct: 736 LSGKTIRVVVPHFSLEC 752
>gi|262164854|ref|ZP_06032592.1| exoribonuclease II [Vibrio mimicus VM223]
gi|262027234|gb|EEY45901.1| exoribonuclease II [Vibrio mimicus VM223]
Length = 672
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 183/422 (43%), Gaps = 59/422 (13%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFAQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT + ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTAVPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTISK 294
Query: 287 DGSIAE----YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAAL 334
DG I + +S + IK L Y+ ++ L E+ + ++ L +
Sbjct: 295 DGVIGDDIRFFSAN---IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQA 351
Query: 335 RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG-- 389
R WR + + R +++ D ++ ++ D A RLV E MI +C
Sbjct: 352 RANWRETHAVVFPDRPDYRFELSEDND---VVAIHA-DMRRTANRLVEESMITANICAGK 407
Query: 390 --EAIATYGSFNNLA-------------LPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKI 434
+A G FN A + G P N D A + EG +
Sbjct: 408 TLQATFGLGVFNTHAGFKAEKMADVVELMAAHGAP--NADAETLATV-EGFAALRRWLAT 464
Query: 435 MRAAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ + +D R +P+ H +GL Y +TSPIR+Y D++ H +KA + G+
Sbjct: 465 QKTSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGK 524
Query: 483 SP 484
+P
Sbjct: 525 AP 526
>gi|189424308|ref|YP_001951485.1| ribonuclease R [Geobacter lovleyi SZ]
gi|189420567|gb|ACD94965.1| ribonuclease R [Geobacter lovleyi SZ]
Length = 752
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 164/345 (47%), Gaps = 49/345 (14%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
Q +++L +R DL L ID + A + DDA+S +R + ++++ +AD + YIEPGS
Sbjct: 236 QVGKNDLKDRVDLRKLPTVTIDGETAKDFDDAVS-IRQEGHNFRLWVSIADVSHYIEPGS 294
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
+ D++A RGTSV+ P PM PE+L+ SL +T ++ G + E S
Sbjct: 295 MLDREAYLRGTSVYFPDRCIPMLPERLSNGICSLNPHLDRLTMTAEMLFDQQGRMLESSF 354
Query: 296 DNSIIKPTYMLTYESATELL----HLNLEEE---AELKILSEAAALRLQ-WRLQQGAIDT 347
+S+IK LTY +++ LEE+ A + + + AL LQ R Q+G+ID
Sbjct: 355 YSSVIKSDARLTYTKVKQVIIDGDEKVLEEDRGLAPMLLQMKELALILQTMRRQRGSIDF 414
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR- 406
E I + E II + + + A +L+ E M+ EA+A + S +A YR
Sbjct: 415 DLPEPEIILGLTGQTEAII----KSERNLAHQLIEEFMLAANEAVARFVSGQEMAFIYRV 470
Query: 407 GQPQSNIDVSAFAH--LPEG--------PVRSSAIVKIMRAAAIDFRKP----VRHGVL- 451
+P ++AF LP G V SA+ +++ A KP V +G+L
Sbjct: 471 HEPPDPTKLTAFRDFILPFGFTLEMQGDRVEPSAMQRLISDAE---GKPEERLVNYGLLR 527
Query: 452 ---------------GLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
GL Y FTSPIRRY DL+ H ++ L
Sbjct: 528 CMKQARYAAENLKHFGLASSCYTHFTSPIRRYPDLIVHRLLRLAL 572
>gi|322385827|ref|ZP_08059470.1| ribonuclease R [Streptococcus cristatus ATCC 51100]
gi|417922355|ref|ZP_12565843.1| ribonuclease R [Streptococcus cristatus ATCC 51100]
gi|321270112|gb|EFX53029.1| ribonuclease R [Streptococcus cristatus ATCC 51100]
gi|342832452|gb|EGU66747.1| ribonuclease R [Streptococcus cristatus ATCC 51100]
Length = 782
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++ R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 SENDFEGRVDLREEITFTIDGADAKDLDDAVHIKRLKNGHFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHII 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++I T+ +TY +++ + E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVINTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIIVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 GQP-----QSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+P Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|258624004|ref|ZP_05718957.1| exoribonuclease II [Vibrio mimicus VM603]
gi|258583798|gb|EEW08594.1| exoribonuclease II [Vibrio mimicus VM603]
Length = 672
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 168/380 (44%), Gaps = 51/380 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT + ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTAVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQKLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE----YSVDNSIIKPTYMLTYESATELLHLNLEEE 322
SL + +V A+ SV + DG I + +S + IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTISKDGVIGDDIRFFSAN---IKSHARLVYDHVSDWLETGSSEQ 331
Query: 323 AE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQA 374
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 332 WQPSEEIAQVVRDLYAFSQARASWRETHAVVFPDRPDYRFELSEDND---VVAIHA-DMR 387
Query: 375 DPAMRLVSEMMI---LCG----EAIATYGSFNNLA-------------LPYRGQPQSNID 414
A RLV E MI +C +A G FN A + G P ++ +
Sbjct: 388 RTANRLVEESMITANICAGKTLQATFGLGVFNTHAGFKAEKMADVVELMAAHGAPNADAE 447
Query: 415 ----VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIR 464
V FA L E + I K + I +P+ H +GL Y +TSPIR
Sbjct: 448 TLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIR 506
Query: 465 RYMDLLAHYQVKACLRGESP 484
+Y D++ H +KA + G++P
Sbjct: 507 KYGDMINHRLLKAHILGKAP 526
>gi|322376471|ref|ZP_08050964.1| ribonuclease R [Streptococcus sp. M334]
gi|321282278|gb|EFX59285.1| ribonuclease R [Streptococcus sp. M334]
Length = 784
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKTLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDKEKRQEYQKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|194333503|ref|YP_002015363.1| ribonuclease R [Prosthecochloris aestuarii DSM 271]
gi|194311321|gb|ACF45716.1| ribonuclease R [Prosthecochloris aestuarii DSM 271]
Length = 795
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 174/401 (43%), Gaps = 65/401 (16%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++ +R D+ V+ ID +A + DDALS L G ++ +H+AD + Y++ G+L
Sbjct: 317 TEEDFRDRLDIRDKVVFTIDPVDAKDFDDALSLEPLPKGHFRIGVHIADVSHYVKEGNLL 376
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A KR TSV+L PM P KL+ E SL A ++ + G + ++
Sbjct: 377 DIEAQKRSTSVYLVDRVIPMLPSKLSEEICSLNPKVDRLAFSIFFKMSPQGEVLQHEFQK 436
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE +L+ E ELK L + + + + RL +G ++ T E R K+
Sbjct: 437 TVINSKRRFTYEEVDAILNAGKGEYHDELKNLDQISRILREKRLDEGGLEFETQEVRFKL 496
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF-----NNLALP--YR--G 407
+ +P +I + + + RL+ E M+L +A Y S +A P YR G
Sbjct: 497 GSKGEPVEVI----KKERLASHRLIEEFMLLANRKVAEYISTRFAEKGKMAYPSIYREHG 552
Query: 408 QPQSNIDVSAFAHLPE---------GPVRSSAIVKIMRAAAI-DFRKPVRHGV------- 450
PQ V+ A+ + G ++ A V ++A A+ D K V HG
Sbjct: 553 SPQEE-KVAILANFVKKIGYTLQLTGKGKNGAPV--VKAKALRDLLKQV-HGTNVEFLVN 608
Query: 451 ---------------------LGLPGYVQFTSPIRRYMDLLAH-----YQVKACLRGESP 484
LG Y FTSPIRRY DL+ H Y+ R + P
Sbjct: 609 ELVLRSMAKAQYTGTSDGHFGLGFEHYTHFTSPIRRYPDLVVHRLLFEYESLRKSRKKEP 668
Query: 485 PFSAGQLEG----MASIVNMQTRIARRLSNTSLRYWIIEFL 521
++E + I N + + A S++ +EF+
Sbjct: 669 LRRLKEIESKIVEICKIANEREKSAVEAERESIKLKQVEFM 709
>gi|293596314|ref|ZP_05230430.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|293594672|gb|EFG02433.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
Length = 783
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 235 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLSNGNWKLGVHIADVTHYVTEGSPLDVE 294
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 295 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 354
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 355 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 414
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 415 RVVVDEDGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 470
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 471 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 530
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 531 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 587
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 588 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 642
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 643 EGLVHVSAMKGD 654
>gi|342163642|ref|YP_004768281.1| exoribonuclease R [Streptococcus pseudopneumoniae IS7493]
gi|341933524|gb|AEL10421.1| exoribonuclease R [Streptococcus pseudopneumoniae IS7493]
Length = 784
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 159/337 (47%), Gaps = 49/337 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL ++ ID +A +LDDA+ L++G +++ +H+AD + Y+ GS DK+A+ R
Sbjct: 250 RLDLRDEIIFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSALDKEALNR 309
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
TSV++ PM PE+L+ SL + +T S ++ D G + Y++ ++IK
Sbjct: 310 ATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTITQTVIKT 367
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAAL------RLQ-WRLQQGAIDTATLETRIK 355
++ +TY ++L + E+ E + + + L RL+ R+++GA++ T E +I
Sbjct: 368 SFRMTYSDVNDILASDEEKRQEYQKIVPSIELMAKLHERLENMRVKRGALNLDTNEAKIL 427
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQP-- 409
V P I V Q A R++ M++ E +A + F+ L LP+ +P
Sbjct: 428 VDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYRIHEEPKA 481
Query: 410 ---QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV---------------- 446
Q ID S+F + + A+ IMRA + V
Sbjct: 482 EKVQKFIDYASSFGIRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSMQEARYSE 541
Query: 447 -RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 542 YNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|419767475|ref|ZP_14293628.1| ribonuclease R [Streptococcus mitis SK579]
gi|383353018|gb|EID30645.1| ribonuclease R [Streptococcus mitis SK579]
Length = 784
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 156/336 (46%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K + + L + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLELPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMR + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRTVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|259502761|ref|ZP_05745663.1| ribonuclease R [Lactobacillus antri DSM 16041]
gi|259169264|gb|EEW53759.1| ribonuclease R [Lactobacillus antri DSM 16041]
Length = 786
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 48/333 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD+T+ + ID E+ +LDDA+ A ++ +G + +H+AD + Y++PG+ DK+A KR
Sbjct: 257 RKDITNQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVSHYVQPGTPLDKEAFKR 316
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P++L+ SL GE A++ + + G + ++ + S++K
Sbjct: 317 GTSVYLTDRVVPMLPKRLSNGICSLNPGEERLAMSCEMEIDEQGRVVKHRIFPSVMKSHA 376
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY++ +L + ++ + + + E + L+ R ++GAID E +I V
Sbjct: 377 RMTYKAVNRILEAHDQKTIDQYKDLVPMFETMGELHKILLKSRKRRGAIDFEAPEAKIIV 436
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
+ P I++ + D+ A R++ M+ E +A + ++ YR + D
Sbjct: 437 DDKGHP---IDIQLRDRG-LAERMIESFMLAANETVAEHYFNEHVPFLYRIHETPDKDRV 492
Query: 415 ------VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKP-------------------- 445
+S F H V+ + K+++ A KP
Sbjct: 493 KSFVDFLSVFGIDVHGDINNVKPKMLQKVLKDVA---GKPEEQMVQVMMLRSMQQAKYSD 549
Query: 446 --VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+ H LG Y FTSPIRRY D H +K
Sbjct: 550 EELGHFGLGAKYYTHFTSPIRRYPDDTVHRLIK 582
>gi|146319045|ref|YP_001198757.1| exoribonuclease R [Streptococcus suis 05ZYH33]
gi|146321252|ref|YP_001200963.1| exoribonuclease R [Streptococcus suis 98HAH33]
gi|253752108|ref|YP_003025249.1| exoribonuclease R [Streptococcus suis SC84]
gi|253753933|ref|YP_003027074.1| exoribonuclease R [Streptococcus suis P1/7]
gi|253755192|ref|YP_003028332.1| exoribonuclease R [Streptococcus suis BM407]
gi|386578228|ref|YP_006074634.1| 3'-5' exoribonuclease [Streptococcus suis GZ1]
gi|386582307|ref|YP_006078711.1| exoribonuclease R [Streptococcus suis SS12]
gi|386588494|ref|YP_006084895.1| exoribonuclease R [Streptococcus suis A7]
gi|145689851|gb|ABP90357.1| Exoribonuclease R [Streptococcus suis 05ZYH33]
gi|145692058|gb|ABP92563.1| Exoribonuclease R [Streptococcus suis 98HAH33]
gi|251816397|emb|CAZ52028.1| putative exoribonuclease R [Streptococcus suis SC84]
gi|251817656|emb|CAZ55404.1| putative exoribonuclease R [Streptococcus suis BM407]
gi|251820179|emb|CAR46543.1| putative exoribonuclease R [Streptococcus suis P1/7]
gi|292558691|gb|ADE31692.1| 3'-5' exoribonuclease [Streptococcus suis GZ1]
gi|353734453|gb|AER15463.1| exoribonuclease R [Streptococcus suis SS12]
gi|354985655|gb|AER44553.1| exoribonuclease R [Streptococcus suis A7]
Length = 789
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 168/358 (46%), Gaps = 55/358 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DQEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDCKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNKEKLDKYKTIVPSVELMVKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TAEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
M+ A +G LG Y FTSPIRRY DLL H V+ G +P A E
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMVREY--GHNPSEKAEHFE 590
>gi|255520583|ref|ZP_05387820.1| exoribonuclease RNase-R [Listeria monocytogenes FSL J1-175]
Length = 753
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLSNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|365924372|ref|ZP_09447135.1| ribonuclease R [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420265301|ref|ZP_14767865.1| ribonuclease R 1 [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394428310|gb|EJF00885.1| ribonuclease R 1 [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 781
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT + ID E+ +LDDA++A ++ +G + +H+AD + Y+ G+ + +A+ R
Sbjct: 261 RVDLTDQDLVTIDSIESKDLDDAVTAWKMDNGNYHLGVHIADVSHYVRVGTALNDEALNR 320
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P KL+ SL A++ + + S+G++ + + S+IK T
Sbjct: 321 GTSVYLTDRVIPMLPHKLSNGICSLNPKVERLAMSCEMEIDSEGNVLNHKIFPSVIKTTE 380
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + ++L + E+ + ++E + L+ R ++GAI+ E +I V
Sbjct: 381 RMTYVAINKILESHDEKTMARYEELVPMFETMNELHKILLKMRKRRGAIEFEDTEAKIIV 440
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQPQSN 412
P I++ + ++ + R+V M+ E IA + FN+L +P+ P++
Sbjct: 441 DEKGHP---IDIQLRERG-ISERIVESFMLAANETIAEH--FNHLRVPFIYRIHETPKAE 494
Query: 413 IDVSAFAHL-----------------------------PEGPVRSSAIVKIMRAAAIDFR 443
+S F L PE + S+ +++ M+ A
Sbjct: 495 KMLSFFEALSSLGIETSGSSNDVKPKMLQTILKKVAGKPEEAMVSTMLLRSMQQAKYS-D 553
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P+ H LG Y FTSPIRRY DLL H
Sbjct: 554 QPLGHFGLGADDYTHFTSPIRRYPDLLVH 582
>gi|56964768|ref|YP_176499.1| ribonuclease R [Bacillus clausii KSM-K16]
gi|56911011|dbj|BAD65538.1| ribonuclease R [Bacillus clausii KSM-K16]
Length = 777
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 152/341 (44%), Gaps = 44/341 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R+DL + ++ ID +A +LDDA+ +L++G + +H+AD + Y+E GS
Sbjct: 239 TEADLQGRRDLRNEQIVTIDGADAKDLDDAVQVKKLENGHFLLGVHIADVSHYVEEGSPI 298
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A R TSV+L PM P +L+ SL ++ + + +G + + +
Sbjct: 299 DKEASDRATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCQMEIDENGGVVNHEIFQ 358
Query: 298 SIIKPTYMLTYESATELL---HLNLEEEAE-----LKILSEAAALRLQWRLQQGAIDTAT 349
S+I+ T +TY ++L +L E E + + + A + R +GAID
Sbjct: 359 SVIRTTERMTYSDVNKILVEQDEDLRERYETLVPMFEAMEQLAQILRDKRFARGAIDFDF 418
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V N E + L + A +L+ E M+ E +A + + L YR
Sbjct: 419 KEAKVLV-NEEGKATDVVLR---ERSVAEKLIEEFMLAANETVAEHFHWLKLPFVYRIHE 474
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ D ++ F ++ PE V S +++ M+ A
Sbjct: 475 DPDADKFNSFLEFITGFGYVVRGTANTVHPRALQALLEEISGEPEEMVISRVMLRSMKQA 534
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D PV H L Y FTSPIRRY DLL H ++ L
Sbjct: 535 KYDVH-PVGHFGLSADFYTHFTSPIRRYPDLLVHRLIRTYL 574
>gi|313672634|ref|YP_004050745.1| ribonuclease r [Calditerrivibrio nitroreducens DSM 19672]
gi|312939390|gb|ADR18582.1| ribonuclease R [Calditerrivibrio nitroreducens DSM 19672]
Length = 648
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 149/354 (42%), Gaps = 57/354 (16%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D L ID + A + DDA+S RL++G K+++H+AD + ++ P S DK+A +R
Sbjct: 192 RTDFRDLFTVTIDGETARDFDDAISIQRLENG-YKLFVHIADVSHFVRPDSRLDKEAYRR 250
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS++ P PM PE+L+ + SLR GE +TV + G+ + + S+IK Y
Sbjct: 251 GTSIYFPEFAIPMLPEELSNDLCSLRPGEERLTITVEIDYDEKGNRIDSNFYQSVIKSDY 310
Query: 305 MLTYESATELLHLNLEEEAELKILSEA-AALRL-----QWRLQQGAIDTATLETRIKVAN 358
LTY ++ E+ +L+++S L L Q R G ID E
Sbjct: 311 RLTYNYVNSIIE-GYEKTDDLRLISLIDTGLSLLDKLIQRRKNDGMIDFDLPEVEFYFDE 369
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSFNNLALPYRGQPQ------ 410
D I L + + RL+ MI EA+A + +++ G P
Sbjct: 370 NGDMVDIKPL----ERKISHRLIEFFMIEANEAVAEFLEKAYDRGMFRVHGSPDPEKLQE 425
Query: 411 ---------------------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR 443
I S F++L SS +V+ M+ A
Sbjct: 426 FVTICHIYGIEVGELVVDDPKSIQSLSEKIANSKFSYL-----LSSMLVRTMQKAIY--- 477
Query: 444 KPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
P G GL Y FTSPIRRY DL+ H +K L G F L+ A
Sbjct: 478 SPDNTGHFGLSSTCYTHFTSPIRRYPDLVVHRLLKKKLFGYFFDFDEDYLDAAA 531
>gi|417322260|ref|ZP_12108794.1| exoribonuclease II [Vibrio parahaemolyticus 10329]
gi|328470414|gb|EGF41325.1| exoribonuclease II [Vibrio parahaemolyticus 10329]
Length = 668
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 170/378 (44%), Gaps = 47/378 (12%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A I P VT + + I N+ K +D L R D+TH+ ID + ++DD
Sbjct: 156 ADDKIAPWWVTLAQNDLPNSEPAGIENWELK-DDADLERIDMTHVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + + G ++ I +ADPT YI P DK A +RG +++LP PM P LA
Sbjct: 215 ALYAKKTESGDFELTIAIADPTAYITPEDEMDKVARERGYTIYLPGRNIPMLPRDLADNL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAEY-SVDNSIIKPTYMLTYESATELLHLN------- 318
SL +GE+ A+ +V + DG I +Y + IK L Y+ ++ L
Sbjct: 275 CSLIEGEIRPAICCTVTVSKDGVIGDYIKFFAANIKSHARLAYDHVSDWLENGNSDAWQP 334
Query: 319 LEEEAEL-KILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
EE A + + L E + R +WR + + + R +++ D +I ++ D A
Sbjct: 335 SEEIATIVRDLYEFSLARAEWREKNAVVFPDRPDYRFELSEDND---VIAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LCG-----EAIATYGSFNNLA--LPYRGQ-------PQSNIDVSA--F 418
RLV E MI +C E T G FN A P + + P+ ++ +A
Sbjct: 391 NRLVEESMITANICAGRTLREKFET-GVFNTHAGLKPEKIEEVVQLVNPEGTLEFTAESI 449
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRY 466
A L EG + + + +D R +P+ H +GL Y +TSPIR+Y
Sbjct: 450 ATL-EGFAALRRWLAVQETSYLDNRIRKFQAYSEVGNQPLPHYAMGLDIYATWTSPIRKY 508
Query: 467 MDLLAHYQVKACLRGESP 484
D++ H +KA + + P
Sbjct: 509 GDMINHRMLKAVILDKEP 526
>gi|323351181|ref|ZP_08086837.1| ribonuclease R [Streptococcus sanguinis VMC66]
gi|322122405|gb|EFX94116.1| ribonuclease R [Streptococcus sanguinis VMC66]
Length = 782
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 157/340 (46%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLKERLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDSMVQLHEILENMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A +F L LP+
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAE--NFAKLNLPFIYR 475
Query: 406 -RGQP-----QSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G S A+ IM + + V
Sbjct: 476 IHEEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMESVKDQPYEDVLSMMLLRSM 535
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 536 QQARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|258623162|ref|ZP_05718172.1| exoribonuclease II [Vibrio mimicus VM573]
gi|424809184|ref|ZP_18234569.1| exoribonuclease II [Vibrio mimicus SX-4]
gi|258584554|gb|EEW09293.1| exoribonuclease II [Vibrio mimicus VM573]
gi|342323609|gb|EGU19393.1| exoribonuclease II [Vibrio mimicus SX-4]
Length = 672
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 168/380 (44%), Gaps = 51/380 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT + ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTAVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQKLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE----YSVDNSIIKPTYMLTYESATELLHLNLEEE 322
SL + +V A+ SV + DG I + +S + IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTISKDGVIGDDIRFFSAN---IKSHARLVYDHVSDWLETGSSEQ 331
Query: 323 AE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQA 374
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 332 WQPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMR 387
Query: 375 DPAMRLVSEMMI---LCG----EAIATYGSFNNLA-------------LPYRGQPQSNID 414
A RLV E MI +C +A G FN A + G P ++ +
Sbjct: 388 RTANRLVEESMITANICAGKTLQATFGLGVFNTHAGFKAEKMADVVELMAAHGAPNADAE 447
Query: 415 ----VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIR 464
V FA L E + I K + I +P+ H +GL Y +TSPIR
Sbjct: 448 TLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIR 506
Query: 465 RYMDLLAHYQVKACLRGESP 484
+Y D++ H +KA + G++P
Sbjct: 507 KYGDMINHRLLKAHILGKAP 526
>gi|150003660|ref|YP_001298404.1| ribonuclease R [Bacteroides vulgatus ATCC 8482]
gi|294777520|ref|ZP_06742971.1| ribonuclease R [Bacteroides vulgatus PC510]
gi|319640119|ref|ZP_07994846.1| ribonuclease R [Bacteroides sp. 3_1_40A]
gi|345517140|ref|ZP_08796618.1| ribonuclease R [Bacteroides sp. 4_3_47FAA]
gi|149932084|gb|ABR38782.1| ribonuclease R [Bacteroides vulgatus ATCC 8482]
gi|254833905|gb|EET14214.1| ribonuclease R [Bacteroides sp. 4_3_47FAA]
gi|294448588|gb|EFG17137.1| ribonuclease R [Bacteroides vulgatus PC510]
gi|317388397|gb|EFV69249.1| ribonuclease R [Bacteroides sp. 3_1_40A]
Length = 715
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 174/381 (45%), Gaps = 42/381 (11%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R+D ++ + ID +A + DDALS ++ G +V +H+AD T Y++ G +
Sbjct: 252 SEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGGVI 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + + +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDSRIVH 371
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+IIK TYE A +++ + + E+ L++ A + + RL GAID +E + ++
Sbjct: 372 TIIKSDRRFTYEEAQKVIETGEGDYKEEILELNKLAQILRKQRLAAGAIDFDRVEVKFEI 431
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P +++Y ++ + A +L+ E M+L +A G N A PYR
Sbjct: 432 DETGKP---LSVYFKESKE-ANKLIEEFMLLANRTVAEKIGKVPKNKKAKVFPYRIHDLP 487
Query: 408 QPQSNIDVSAFAHLPEGPVRSSA-----------------------IVKIMRAAAIDFRK 444
P +++ F + +R+S +V+ + A+ +
Sbjct: 488 DPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQKAR 547
Query: 445 PVRHGV----LGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
H + L Y FTSPIRR+ D++ H + L G + E + +
Sbjct: 548 YSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRYLAG-GRTVQEAKYEELCDHSSE 606
Query: 501 QTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 607 MEQIAANAERASVKYKQVEFM 627
>gi|119357755|ref|YP_912399.1| ribonuclease R [Chlorobium phaeobacteroides DSM 266]
gi|119355104|gb|ABL65975.1| RNAse R [Chlorobium phaeobacteroides DSM 266]
Length = 791
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 152/337 (45%), Gaps = 46/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++L+ R D+ V+ ID +A + DDALS L R ++ +H+AD + Y+ SL
Sbjct: 315 TDEDLVGRLDIRDKLVFTIDPVDAKDFDDALSLETLTGNRYRIGVHIADVSHYVPEDSLL 374
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+AMKR TSV+L PM P +L+ + SL G A +V + + G + +
Sbjct: 375 DKEAMKRATSVYLVDRVIPMLPSRLSEQICSLNPGVDRMAFSVFITMTDAGEVEKQEFQK 434
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ I TYE ++L + AELK+L + + R + G +D T E R ++
Sbjct: 435 TAIHSKRRFTYEDVQQILDSGEGDFVAELKLLDTLSTTLREKRFKHGGLDFETEEVRFRL 494
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALP--YR--- 406
+ +P ++ + + + RL+ E M+L +A T+G P YR
Sbjct: 495 GSKGEPLEVM----KKERLGSHRLIEEFMLLANRKVAEYLTKTFGEGKKTPQPCIYRVHD 550
Query: 407 -GQPQSNIDVSAFAHL----------PEGPVRSSA----IVKIMRAAAIDF--------- 442
Q + + +S F +GP+ ++ +++ +R ++F
Sbjct: 551 APQLEKVVILSNFVKRLGYDLKLNRGKDGPIVTAKALRQLLQQVRGTNLEFLVNELVLRS 610
Query: 443 -RKPVR------HGVLGLPGYVQFTSPIRRYMDLLAH 472
K V H LG Y FTSPIRRY DL+ H
Sbjct: 611 MSKAVYTGDNAGHYGLGFEHYTHFTSPIRRYPDLIIH 647
>gi|254933125|ref|ZP_05266484.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|405750793|ref|YP_006674259.1| ribonuclease R [Listeria monocytogenes ATCC 19117]
gi|417318446|ref|ZP_12105028.1| ribonuclease R [Listeria monocytogenes J1-220]
gi|424824199|ref|ZP_18249212.1| Ribonuclease R [Listeria monocytogenes str. Scott A]
gi|293584683|gb|EFF96715.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|328471364|gb|EGF42261.1| ribonuclease R [Listeria monocytogenes J1-220]
gi|332312879|gb|EGJ25974.1| Ribonuclease R [Listeria monocytogenes str. Scott A]
gi|404219993|emb|CBY71357.1| ribonuclease R [Listeria monocytogenes ATCC 19117]
Length = 793
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 179/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLSNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|405759498|ref|YP_006688774.1| ribonuclease R [Listeria monocytogenes SLCC2479]
gi|404237380|emb|CBY58782.1| ribonuclease R [Listeria monocytogenes SLCC2479]
Length = 793
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + ++ +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|393199524|ref|YP_006461366.1| exoribonuclease R [Solibacillus silvestris StLB046]
gi|327438855|dbj|BAK15220.1| exoribonuclease R [Solibacillus silvestris StLB046]
Length = 802
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 159/344 (46%), Gaps = 48/344 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL + + ID +A +LDDA++ ++ +G K+ +H+AD + Y+ GS+
Sbjct: 242 TEQDLVGRRDLRNEVIVTIDGADAKDLDDAVTVVKNDNGTYKLGVHIADVSYYVTQGSVL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +R TSV+L PM P +L+ SL ++ + + G + ++ +
Sbjct: 302 DQEAYERATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMTIDQAGQVLKHEIFQ 361
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L N +E EL + +++ A + R+ +GAID
Sbjct: 362 SVIKTTERMTYSDVYNILE-NPDENPELMERYENLVPMFRDMADLAQILRNKRMARGAID 420
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E+++ V P I V + A RL+ E M+ E IA + + L YR
Sbjct: 421 FDFKESKVLVNEDGWPTDI----VLRERTVAERLIEEFMLAANETIAEHFHWMELPFIYR 476
Query: 407 ----GQPQ---------SNID------------------VSAFAHLPEGPVRSSAIVKIM 435
+P+ +N + + LPE PV S+ +++ M
Sbjct: 477 IHEDPKPEKLQRFFEFVTNFGIMIKGTGNSVHPKALQEVIRSIEGLPEEPVISTMLLRSM 536
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A + + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 537 QQAKY-YAESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 579
>gi|260892134|ref|YP_003238231.1| ribonuclease R [Ammonifex degensii KC4]
gi|260864275|gb|ACX51381.1| ribonuclease R [Ammonifex degensii KC4]
Length = 715
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 172/371 (46%), Gaps = 48/371 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ L R+DL + ID ++A +LDDA+S L DG ++ +H+AD + Y+ GS D+
Sbjct: 239 EELAGRRDLREWLIVTIDGEDAKDLDDAVSLELLHDGTYRLGVHIADVSYYVREGSALDR 298
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDN 297
+A +RGTS++LP PM P +L+ SL E + +T+SV++ D G + EY +
Sbjct: 299 EAFQRGTSIYLPDRVIPMLPPRLSNGICSLNPEE--DRLTLSVLMRVDSKGEVLEYELFP 356
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATL 350
S+I+ LTY + + L A L+++ E + RL+QGAID
Sbjct: 357 SVIRSKARLTYRAVNDYLAGRGGVPAPLPGLGRMLELMQELCLCLRRRRLKQGAIDFNLP 416
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
ET++ + ++ +++Y ++ +++ E M+L E +A + + L YR PQ
Sbjct: 417 ETKVVL---DEEGRTVDVYPAERGI-GEQIIEEFMLLANETVARHAAKLQLPFIYRIHPQ 472
Query: 411 SNID------------------------------VSAFAHLPEGPVRSSAIVKIMRAAAI 440
+ + + A A PE + ++ +++ ++ A
Sbjct: 473 PDPEKVASLEELLASLGYQNTRLGTLEPARFQEVLEAVAGKPEERLVNAVMLRSLKQARY 532
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK-ACLRGES-PPFSAGQLEGMASIV 498
+ G L Y FTSPIRRY DL H ++ L+G P +LE +A
Sbjct: 533 AAERSEHFG-LASEYYTHFTSPIRRYPDLFIHRVLRETVLKGAGLSPRRRARLEKLAQEA 591
Query: 499 NMQTRIARRLS 509
Q+ RL+
Sbjct: 592 AAQSSERERLA 602
>gi|223932655|ref|ZP_03624654.1| ribonuclease R [Streptococcus suis 89/1591]
gi|302024109|ref|ZP_07249320.1| exoribonuclease R [Streptococcus suis 05HAS68]
gi|330832414|ref|YP_004401239.1| exoribonuclease R [Streptococcus suis ST3]
gi|386583674|ref|YP_006080077.1| exoribonuclease R [Streptococcus suis D9]
gi|223898625|gb|EEF64987.1| ribonuclease R [Streptococcus suis 89/1591]
gi|329306637|gb|AEB81053.1| exoribonuclease R [Streptococcus suis ST3]
gi|353735820|gb|AER16829.1| exoribonuclease R [Streptococcus suis D9]
Length = 789
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 168/358 (46%), Gaps = 55/358 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEQDFAGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DQEAIKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK + +TY +++ N E+ + K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTNFRMTYSDVNDMIAGNQEKLDKYKTIVPSVELMVKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M++ E +A + F L LP+
Sbjct: 423 TAEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLVANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
M+ A +G LG Y FTSPIRRY DLL H V+ G +P A E
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMVRDY--GHNPAEKAEHFE 590
>gi|15902922|ref|NP_358472.1| exoribonuclease R [Streptococcus pneumoniae R6]
gi|116515936|ref|YP_816344.1| ribonuclease R [Streptococcus pneumoniae D39]
gi|421265998|ref|ZP_15716881.1| ribonuclease R [Streptococcus pneumoniae SPAR27]
gi|15458483|gb|AAK99682.1| Exoribonuclease R [Streptococcus pneumoniae R6]
gi|116076512|gb|ABJ54232.1| ribonuclease R [Streptococcus pneumoniae D39]
gi|242266981|gb|ACS91342.1| RNase R [Streptococcus pneumoniae]
gi|395868734|gb|EJG79851.1| ribonuclease R [Streptococcus pneumoniae SPAR27]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|307706472|ref|ZP_07643281.1| ribonuclease R [Streptococcus mitis SK321]
gi|307618182|gb|EFN97340.1| ribonuclease R [Streptococcus mitis SK321]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDKEKRQEYQKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVKGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|407068770|ref|ZP_11099608.1| exoribonuclease II [Vibrio cyclitrophicus ZF14]
Length = 668
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 180/414 (43%), Gaps = 47/414 (11%)
Query: 113 GLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQN----GASCSIKPQQVTFVVPGVEKFDH 168
GL E K+ D V+ + Q P N + + A I P VT + +
Sbjct: 118 GLNPETLKEGDWVVAHIVQHPLKGDNGFLAQISEKITDADDKIAPWWVTLAQNDLPNSEP 177
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
+ I N+ Q +D L R D+TH+ ID + ++DDAL A + ++G ++ I +ADPT
Sbjct: 178 EGIDNW-QINDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIADPT 236
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
YI P DK A +RG +++LP PM P LA SL + EV A+ +V + DG
Sbjct: 237 AYISPDDSMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSKDG 296
Query: 289 SIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWR 339
I + + + IK L Y+ ++ L E+ + + L + A R WR
Sbjct: 297 VIGDDINFFAANIKSHARLAYDHVSDWLETGTSEKWQPSEEIAVIVSDLHQFAQARSAWR 356
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAIA--- 393
+ + R +++ D ++ ++ D A +LV E MI +C +
Sbjct: 357 STNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANKLVEESMISANICAGRVLKES 412
Query: 394 -TYGSFN--------------NLALPYRGQPQSN---IDVSAFAHLPE--GPVRSSAI-- 431
G FN L P P + + + FA L G + +S
Sbjct: 413 FNQGVFNCHSGFKAEKLADVLELVNPEAETPFTEEQIVSLEGFATLRRWLGSLDNSYYDN 472
Query: 432 -VKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
++ +A + +P H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 473 RIRKFQAYSEISNEPAPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILGKAP 526
>gi|254828024|ref|ZP_05232711.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254913348|ref|ZP_05263360.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254937729|ref|ZP_05269426.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|386048115|ref|YP_005966447.1| ribonuclease R [Listeria monocytogenes J0161]
gi|258600408|gb|EEW13733.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258610332|gb|EEW22940.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293591353|gb|EFF99687.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345535106|gb|AEO04547.1| ribonuclease R [Listeria monocytogenes J0161]
Length = 793
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + ++ +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|47096836|ref|ZP_00234417.1| ribonuclease R, putative [Listeria monocytogenes str. 1/2a F6854]
gi|47014813|gb|EAL05765.1| ribonuclease R, putative [Listeria monocytogenes str. 1/2a F6854]
Length = 783
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 235 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 294
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + ++ +G + + + SII
Sbjct: 295 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESII 354
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 355 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 414
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 415 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 470
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 471 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 530
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 531 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 587
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 588 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 642
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 643 EGLVHVSAMKGD 654
>gi|419442460|ref|ZP_13982491.1| ribonuclease R [Streptococcus pneumoniae GA13224]
gi|379554427|gb|EHZ19507.1| ribonuclease R [Streptococcus pneumoniae GA13224]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|226224997|ref|YP_002759104.1| exoribonuclease RNase-R [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386733133|ref|YP_006206629.1| ribonuclease R [Listeria monocytogenes 07PF0776]
gi|404282005|ref|YP_006682903.1| ribonuclease R [Listeria monocytogenes SLCC2755]
gi|404287819|ref|YP_006694405.1| ribonuclease R [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405753656|ref|YP_006677121.1| ribonuclease R [Listeria monocytogenes SLCC2378]
gi|405756561|ref|YP_006680025.1| ribonuclease R [Listeria monocytogenes SLCC2540]
gi|406705184|ref|YP_006755538.1| ribonuclease R [Listeria monocytogenes L312]
gi|225877459|emb|CAS06173.1| Putative exoribonuclease RNase-R [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|384391891|gb|AFH80961.1| ribonuclease R [Listeria monocytogenes 07PF0776]
gi|404222856|emb|CBY74219.1| ribonuclease R [Listeria monocytogenes SLCC2378]
gi|404225761|emb|CBY77123.1| ribonuclease R [Listeria monocytogenes SLCC2540]
gi|404228640|emb|CBY50045.1| ribonuclease R [Listeria monocytogenes SLCC2755]
gi|404246748|emb|CBY04973.1| ribonuclease R [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406362214|emb|CBY68487.1| ribonuclease R [Listeria monocytogenes L312]
Length = 793
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|182683920|ref|YP_001835667.1| VacB/Rnb family exoribonuclease [Streptococcus pneumoniae CGSP14]
gi|182629254|gb|ACB90202.1| exoribonuclease, VacB/Rnb family [Streptococcus pneumoniae CGSP14]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|418189209|ref|ZP_12825724.1| ribonuclease R [Streptococcus pneumoniae GA47373]
gi|353856351|gb|EHE36320.1| ribonuclease R [Streptococcus pneumoniae GA47373]
Length = 765
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|421311715|ref|ZP_15762322.1| ribonuclease R [Streptococcus pneumoniae GA58981]
gi|395912293|gb|EJH23156.1| ribonuclease R [Streptococcus pneumoniae GA58981]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|421298441|ref|ZP_15749129.1| ribonuclease R [Streptococcus pneumoniae GA60080]
gi|395902397|gb|EJH13330.1| ribonuclease R [Streptococcus pneumoniae GA60080]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVLSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|418076080|ref|ZP_12713319.1| ribonuclease R [Streptococcus pneumoniae GA47502]
gi|353749869|gb|EHD30512.1| ribonuclease R [Streptococcus pneumoniae GA47502]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 161/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY A ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDANDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|149006346|ref|ZP_01830058.1| SsrA-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|417676729|ref|ZP_12326140.1| ribonuclease R [Streptococcus pneumoniae GA17545]
gi|418096087|ref|ZP_12733202.1| ribonuclease R [Streptococcus pneumoniae GA16531]
gi|418155010|ref|ZP_12791741.1| ribonuclease R [Streptococcus pneumoniae GA16242]
gi|418225399|ref|ZP_12852028.1| ribonuclease R [Streptococcus pneumoniae NP112]
gi|419466417|ref|ZP_14006300.1| ribonuclease R [Streptococcus pneumoniae GA05248]
gi|419512370|ref|ZP_14052004.1| ribonuclease R [Streptococcus pneumoniae GA05578]
gi|419516650|ref|ZP_14056268.1| ribonuclease R [Streptococcus pneumoniae GA02506]
gi|421283164|ref|ZP_15733951.1| ribonuclease R [Streptococcus pneumoniae GA04216]
gi|147762123|gb|EDK69085.1| SsrA-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|332075589|gb|EGI86057.1| ribonuclease R [Streptococcus pneumoniae GA17545]
gi|353771074|gb|EHD51585.1| ribonuclease R [Streptococcus pneumoniae GA16531]
gi|353823302|gb|EHE03477.1| ribonuclease R [Streptococcus pneumoniae GA16242]
gi|353882707|gb|EHE62518.1| ribonuclease R [Streptococcus pneumoniae NP112]
gi|379544540|gb|EHZ09684.1| ribonuclease R [Streptococcus pneumoniae GA05248]
gi|379636840|gb|EIA01398.1| ribonuclease R [Streptococcus pneumoniae GA05578]
gi|379640653|gb|EIA05192.1| ribonuclease R [Streptococcus pneumoniae GA02506]
gi|395881127|gb|EJG92176.1| ribonuclease R [Streptococcus pneumoniae GA04216]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQACYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|405983668|ref|ZP_11041973.1| ribonuclease R [Slackia piriformis YIT 12062]
gi|404388483|gb|EJZ83565.1| ribonuclease R [Slackia piriformis YIT 12062]
Length = 683
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 121/397 (30%), Positives = 182/397 (45%), Gaps = 67/397 (16%)
Query: 176 QKAEDNLLNRK--DLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEP 233
+ AED L + + DL+ +++ ID D+A + DDALS DGR+ + +H+AD + Y+
Sbjct: 192 EDAEDALSDSRYVDLSKRRIFTIDPDDAKDFDDALSIEPFGDGRLLLGVHIADVSHYVPW 251
Query: 234 GSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEY 293
GS D +A +R TSV+L PM PE+L+ + SLR G + A+TV +V+ G+++
Sbjct: 252 GSPLDIEARRRATSVYLVDRVIPMLPEQLSNDVCSLRPGRLRRAMTVDMVVDPLGNVSHM 311
Query: 294 SVDNSIIKPTYMLTYESATELLHLNLEEEAE--------------------LKILSEAAA 333
S+I+ LTY A L L + E + +L EAA
Sbjct: 312 KAYPSVIRSAARLTYGQAQSALSAYLRGDLEGAADALECLRGSLASDVASDIVLLHEAAE 371
Query: 334 LRLQWRLQQGAIDTATLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAI 392
+ R+++G ID ++E KVA E P+ ++L V++ A LV E MI EA+
Sbjct: 372 ALHENRVKRGGIDFESVEA--KVALDEGGHPLGVDLRVKND---ATSLVEEAMIAANEAV 426
Query: 393 ATYGSFNNLALPYRGQPQ-------------------SNIDVSAFAHL-PEGPVR----- 427
A +A YR Q ++ +SA A P R
Sbjct: 427 ARLLRDQGVACIYRTHEQPAPADMAELKPVLQEFGYEKHVSLSALASGNPRAIQRVLSYA 486
Query: 428 ---------SSAIVKIM-RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
S +++ M RAA D P H L Y FTSPIRRY DL+ H VK
Sbjct: 487 KGRREEYLVSMLMIRTMKRAAYQDCCAP--HFGLASNAYAHFTSPIRRYPDLMVHRMVKV 544
Query: 478 CLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLR 514
L G + SA + MA+I + + +A R + + R
Sbjct: 545 ALFGRTQETSAVE-SAMAAIADHAS-VAERTAEVAAR 579
>gi|326803684|ref|YP_004321502.1| ribonuclease R [Aerococcus urinae ACS-120-V-Col10a]
gi|326650281|gb|AEA00464.1| ribonuclease R [Aerococcus urinae ACS-120-V-Col10a]
Length = 774
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D L ID +A +LDDA+S +L +G +++ +H+AD + Y+ GS DK+A KR
Sbjct: 257 RDDYRSLLTITIDGADAKDLDDAISLRKLGNGHLELGVHIADVSYYVTAGSAIDKEAWKR 316
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG---SIAEYSVDNSIIK 301
GTSV+L PM P++L+ SL+ + + +T+S ++ D + Y + SII+
Sbjct: 317 GTSVYLTDRVVPMLPQRLSNGICSLQANQ--DRLTMSCMMEIDPKSVKVINYHIGPSIIQ 374
Query: 302 PTYMLTYESATELLHLNLEEEAE-----LKILSEAAALRLQW---RLQQGAIDTATLETR 353
Y + Y+ +LL ++ +E L +L++ AAL R +GAID T E
Sbjct: 375 SDYRMVYDDVNKLLEGKDKQLSEKYAELLPMLNDMAALHQSLSDKRHHRGAIDFDTPEAE 434
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
I V P +++ V ++ A R++ M+ E +A + +L YR +
Sbjct: 435 IIVDKEGHP---LDIVVRERG-TAERMIESFMLAANETVAHEFTKRHLPFIYRIHESPDD 490
Query: 414 D-VSAFAHLPE------------------------------GPVRSSAIVKIMRAAAIDF 442
+ + F + PV ++ M+ A D
Sbjct: 491 ERMKTFIEFAQTLGVHVKKTDGKVSPKDLQNTLEEAAGESYAPVVQVMALRSMQQAKYDL 550
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQT 502
+P+ H L Y FTSPIRRY DLLAH ++ L + P +L + Q
Sbjct: 551 -QPIGHYGLAAKDYTHFTSPIRRYPDLLAHRLIRYYLTHKPNPAKKDELSQNIEVTADQA 609
Query: 503 RIARRLS 509
R S
Sbjct: 610 SKTERRS 616
>gi|148998588|ref|ZP_01826028.1| SsrA-binding protein [Streptococcus pneumoniae SP11-BS70]
gi|168575638|ref|ZP_02721574.1| ribonuclease R [Streptococcus pneumoniae MLV-016]
gi|307067633|ref|YP_003876599.1| exoribonuclease R [Streptococcus pneumoniae AP200]
gi|419470928|ref|ZP_14010787.1| ribonuclease R [Streptococcus pneumoniae GA07914]
gi|421238606|ref|ZP_15695174.1| ribonuclease R [Streptococcus pneumoniae 2071247]
gi|421244795|ref|ZP_15701296.1| ribonuclease R [Streptococcus pneumoniae 2081685]
gi|421314141|ref|ZP_15764731.1| ribonuclease R [Streptococcus pneumoniae GA47562]
gi|147755586|gb|EDK62633.1| SsrA-binding protein [Streptococcus pneumoniae SP11-BS70]
gi|183578474|gb|EDT99002.1| ribonuclease R [Streptococcus pneumoniae MLV-016]
gi|306409170|gb|ADM84597.1| Exoribonuclease R [Streptococcus pneumoniae AP200]
gi|379545644|gb|EHZ10783.1| ribonuclease R [Streptococcus pneumoniae GA07914]
gi|395602086|gb|EJG62230.1| ribonuclease R [Streptococcus pneumoniae 2071247]
gi|395609295|gb|EJG69382.1| ribonuclease R [Streptococcus pneumoniae 2081685]
gi|395914641|gb|EJH25485.1| ribonuclease R [Streptococcus pneumoniae GA47562]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|417092562|ref|ZP_11957178.1| exoribonuclease R [Streptococcus suis R61]
gi|353532241|gb|EHC01913.1| exoribonuclease R [Streptococcus suis R61]
Length = 789
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 168/358 (46%), Gaps = 55/358 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKLLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DQEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ A+ K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNKEKLAKYKAIVPSVELMVKLHETLEVMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TTEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
M+ A +G LG Y FTSPIRRY DLL H V+ G +P A E
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMVRDY--GYNPAEKAEHFE 590
>gi|256545220|ref|ZP_05472585.1| ribonuclease R [Anaerococcus vaginalis ATCC 51170]
gi|256399047|gb|EEU12659.1| ribonuclease R [Anaerococcus vaginalis ATCC 51170]
Length = 706
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 155/345 (44%), Gaps = 43/345 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+RKDL L ID ++ + DDA+S + ++ I +Y+H+AD + Y++ S DK+A +
Sbjct: 244 DRKDLRDLFTVTIDGRDSKDFDDAISIEKDEEDFI-LYVHIADVSHYVKENSEIDKEAYQ 302
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG S +L PM PE+L+ SL E A+++ + ++ G + +Y + SIIK
Sbjct: 303 RGNSTYLYNIVLPMLPEELSNGICSLNPNENRLALSLKMRINKLGKVVDYKIYKSIIKSN 362
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQW-------RLQQGAIDTATLETRIKV 356
Y L Y+ + L N E+ + +IL E L R ++GAID E++I V
Sbjct: 363 YRLVYDDVNDYLD-NKEKVYDDEILIEKLELFDNLYKILKNKREKRGAIDFNFTESQIDV 421
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT---YGSF--------------- 398
D ++N+ + ++ A +++ E M++ E IA+ Y F
Sbjct: 422 NEKGD---VLNISIFERG-SANKMIEEFMLVSNETIASLFAYMDFPSLYRIHEKPKDEKV 477
Query: 399 -------NNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAI----VKIMRAAAIDFRKPVR 447
N L +G+ D G S + ++ MR A + +
Sbjct: 478 ESFKNILNTLGYNIKGKELHPKDFQEILKEVSGKDDESLVNMLMLRTMRKAKYANYRDIH 537
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
G L Y FT+PIRRY DL+ H VK + + S LE
Sbjct: 538 FG-LATKYYTHFTAPIRRYPDLIVHRLVKDFVDNKFENISQSSLE 581
>gi|225854479|ref|YP_002735991.1| ribonuclease R [Streptococcus pneumoniae JJA]
gi|418130137|ref|ZP_12767021.1| ribonuclease R [Streptococcus pneumoniae GA07643]
gi|418186983|ref|ZP_12823512.1| ribonuclease R [Streptococcus pneumoniae GA47360]
gi|418229719|ref|ZP_12856325.1| ribonuclease R [Streptococcus pneumoniae EU-NP01]
gi|419477638|ref|ZP_14017463.1| ribonuclease R [Streptococcus pneumoniae GA18068]
gi|421242921|ref|ZP_15699442.1| ribonuclease R [Streptococcus pneumoniae 2081074]
gi|421270565|ref|ZP_15721421.1| ribonuclease R [Streptococcus pneumoniae SPAR48]
gi|225723306|gb|ACO19159.1| ribonuclease R [Streptococcus pneumoniae JJA]
gi|353803429|gb|EHD83721.1| ribonuclease R [Streptococcus pneumoniae GA07643]
gi|353852808|gb|EHE32794.1| ribonuclease R [Streptococcus pneumoniae GA47360]
gi|353889625|gb|EHE69395.1| ribonuclease R [Streptococcus pneumoniae EU-NP01]
gi|379567020|gb|EHZ32007.1| ribonuclease R [Streptococcus pneumoniae GA18068]
gi|395609620|gb|EJG69706.1| ribonuclease R [Streptococcus pneumoniae 2081074]
gi|395868360|gb|EJG79478.1| ribonuclease R [Streptococcus pneumoniae SPAR48]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|168494405|ref|ZP_02718548.1| ribonuclease R [Streptococcus pneumoniae CDC3059-06]
gi|418073757|ref|ZP_12711015.1| ribonuclease R [Streptococcus pneumoniae GA11184]
gi|418078466|ref|ZP_12715689.1| ribonuclease R [Streptococcus pneumoniae 4027-06]
gi|418080431|ref|ZP_12717643.1| ribonuclease R [Streptococcus pneumoniae 6735-05]
gi|418098346|ref|ZP_12735445.1| ribonuclease R [Streptococcus pneumoniae 6901-05]
gi|418114472|ref|ZP_12751462.1| ribonuclease R [Streptococcus pneumoniae 5787-06]
gi|418116713|ref|ZP_12753684.1| ribonuclease R [Streptococcus pneumoniae 6963-05]
gi|418135035|ref|ZP_12771892.1| ribonuclease R [Streptococcus pneumoniae GA11426]
gi|419431373|ref|ZP_13971518.1| ribonuclease R [Streptococcus pneumoniae EU-NP05]
gi|419433566|ref|ZP_13973684.1| ribonuclease R [Streptococcus pneumoniae GA40183]
gi|419440193|ref|ZP_13980245.1| ribonuclease R [Streptococcus pneumoniae GA40410]
gi|419464385|ref|ZP_14004278.1| ribonuclease R [Streptococcus pneumoniae GA04175]
gi|419468842|ref|ZP_14008713.1| ribonuclease R [Streptococcus pneumoniae GA06083]
gi|419497157|ref|ZP_14036867.1| ribonuclease R [Streptococcus pneumoniae GA47522]
gi|419534440|ref|ZP_14073943.1| ribonuclease R [Streptococcus pneumoniae GA17457]
gi|421309412|ref|ZP_15760039.1| ribonuclease R [Streptococcus pneumoniae GA62681]
gi|183575704|gb|EDT96232.1| ribonuclease R [Streptococcus pneumoniae CDC3059-06]
gi|353747657|gb|EHD28313.1| ribonuclease R [Streptococcus pneumoniae 4027-06]
gi|353750604|gb|EHD31242.1| ribonuclease R [Streptococcus pneumoniae GA11184]
gi|353752971|gb|EHD33595.1| ribonuclease R [Streptococcus pneumoniae 6735-05]
gi|353769706|gb|EHD50222.1| ribonuclease R [Streptococcus pneumoniae 6901-05]
gi|353787214|gb|EHD67621.1| ribonuclease R [Streptococcus pneumoniae 5787-06]
gi|353789690|gb|EHD70082.1| ribonuclease R [Streptococcus pneumoniae 6963-05]
gi|353902272|gb|EHE77802.1| ribonuclease R [Streptococcus pneumoniae GA11426]
gi|379539604|gb|EHZ04783.1| ribonuclease R [Streptococcus pneumoniae GA04175]
gi|379546945|gb|EHZ12083.1| ribonuclease R [Streptococcus pneumoniae GA06083]
gi|379565174|gb|EHZ30167.1| ribonuclease R [Streptococcus pneumoniae GA17457]
gi|379576567|gb|EHZ41491.1| ribonuclease R [Streptococcus pneumoniae GA40183]
gi|379579960|gb|EHZ44856.1| ribonuclease R [Streptococcus pneumoniae GA40410]
gi|379601150|gb|EHZ65926.1| ribonuclease R [Streptococcus pneumoniae GA47522]
gi|379630739|gb|EHZ95320.1| ribonuclease R [Streptococcus pneumoniae EU-NP05]
gi|395910833|gb|EJH21702.1| ribonuclease R [Streptococcus pneumoniae GA62681]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|194397729|ref|YP_002037609.1| ribonuclease R [Streptococcus pneumoniae G54]
gi|419490890|ref|ZP_14030630.1| ribonuclease R [Streptococcus pneumoniae GA47179]
gi|421274872|ref|ZP_15725704.1| ribonuclease R [Streptococcus pneumoniae GA52612]
gi|194357396|gb|ACF55844.1| ribonuclease R [Streptococcus pneumoniae G54]
gi|379594469|gb|EHZ59279.1| ribonuclease R [Streptococcus pneumoniae GA47179]
gi|395875600|gb|EJG86681.1| ribonuclease R [Streptococcus pneumoniae GA52612]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|148988420|ref|ZP_01819867.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP6-BS73]
gi|149010378|ref|ZP_01831749.1| SsrA-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|168491065|ref|ZP_02715208.1| ribonuclease R [Streptococcus pneumoniae CDC0288-04]
gi|303254442|ref|ZP_07340548.1| VacB/Rnb family exoribonuclease [Streptococcus pneumoniae BS455]
gi|303259888|ref|ZP_07345863.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
SP-BS293]
gi|303262302|ref|ZP_07348246.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
SP14-BS292]
gi|303264724|ref|ZP_07350642.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS397]
gi|303267331|ref|ZP_07353191.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS457]
gi|303269136|ref|ZP_07354915.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS458]
gi|387759228|ref|YP_006066206.1| putative exoribonuclease R [Streptococcus pneumoniae INV200]
gi|417686410|ref|ZP_12335688.1| ribonuclease R [Streptococcus pneumoniae GA41301]
gi|418139323|ref|ZP_12776153.1| ribonuclease R [Streptococcus pneumoniae GA13338]
gi|418180432|ref|ZP_12817003.1| ribonuclease R [Streptococcus pneumoniae GA41688]
gi|418193603|ref|ZP_12830095.1| ribonuclease R [Streptococcus pneumoniae GA47439]
gi|418200396|ref|ZP_12836841.1| ribonuclease R [Streptococcus pneumoniae GA47976]
gi|419514528|ref|ZP_14054155.1| ribonuclease R [Streptococcus pneumoniae England14-9]
gi|419520903|ref|ZP_14060499.1| ribonuclease R [Streptococcus pneumoniae GA05245]
gi|421268178|ref|ZP_15719049.1| ribonuclease R [Streptococcus pneumoniae SPAR95]
gi|421296032|ref|ZP_15746744.1| ribonuclease R [Streptococcus pneumoniae GA58581]
gi|147764859|gb|EDK71788.1| SsrA-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|147926101|gb|EDK77175.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP6-BS73]
gi|183574749|gb|EDT95277.1| ribonuclease R [Streptococcus pneumoniae CDC0288-04]
gi|301801817|emb|CBW34528.1| putative exoribonuclease R [Streptococcus pneumoniae INV200]
gi|302598609|gb|EFL65649.1| VacB/Rnb family exoribonuclease [Streptococcus pneumoniae BS455]
gi|302636625|gb|EFL67116.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
SP14-BS292]
gi|302639093|gb|EFL69553.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
SP-BS293]
gi|302641323|gb|EFL71691.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS458]
gi|302643141|gb|EFL73428.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS457]
gi|302645811|gb|EFL76040.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS397]
gi|332076247|gb|EGI86713.1| ribonuclease R [Streptococcus pneumoniae GA41301]
gi|353846044|gb|EHE26082.1| ribonuclease R [Streptococcus pneumoniae GA41688]
gi|353859583|gb|EHE39533.1| ribonuclease R [Streptococcus pneumoniae GA47439]
gi|353865443|gb|EHE45352.1| ribonuclease R [Streptococcus pneumoniae GA47976]
gi|353905566|gb|EHE80989.1| ribonuclease R [Streptococcus pneumoniae GA13338]
gi|379539917|gb|EHZ05094.1| ribonuclease R [Streptococcus pneumoniae GA05245]
gi|379637624|gb|EIA02177.1| ribonuclease R [Streptococcus pneumoniae England14-9]
gi|395871094|gb|EJG82205.1| ribonuclease R [Streptococcus pneumoniae SPAR95]
gi|395897245|gb|EJH08209.1| ribonuclease R [Streptococcus pneumoniae GA58581]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|418162026|ref|ZP_12798713.1| ribonuclease R [Streptococcus pneumoniae GA17328]
gi|419525722|ref|ZP_14065286.1| ribonuclease R [Streptococcus pneumoniae GA14373]
gi|421236120|ref|ZP_15692721.1| ribonuclease R [Streptococcus pneumoniae 2071004]
gi|353828409|gb|EHE08549.1| ribonuclease R [Streptococcus pneumoniae GA17328]
gi|379559196|gb|EHZ24226.1| ribonuclease R [Streptococcus pneumoniae GA14373]
gi|395605039|gb|EJG65171.1| ribonuclease R [Streptococcus pneumoniae 2071004]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|407459047|ref|YP_006737150.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci M56]
gi|405786221|gb|AFS24966.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci M56]
Length = 681
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 173/405 (42%), Gaps = 57/405 (14%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPISKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEVAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 474 SILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFHPMSIEE- 531
Query: 485 PFSAGQLEGMASIVNMQTRIARR----LSNTSLRYWIIEFLRRQP 525
+LE + + Q RIA + N ++ +FL+ QP
Sbjct: 532 ----TRLEHIVRACSTQERIAAKAEFAFENLKKNRFLHKFLKEQP 572
>gi|222100836|ref|YP_002535404.1| Ribonuclease R [Thermotoga neapolitana DSM 4359]
gi|221573226|gb|ACM24038.1| Ribonuclease R [Thermotoga neapolitana DSM 4359]
Length = 710
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 165/355 (46%), Gaps = 43/355 (12%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ RKD+ + ID ++A + DDA+S +L +G + +H+AD + Y++ GS D++
Sbjct: 240 DLVGRKDMRDRVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQE 299
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P +L+ SL +G+ ++V + + +G + +Y V S+I
Sbjct: 300 AFRRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDREGRVVKYDVFPSVI 359
Query: 301 KPTYMLTYESATELLHLNLEEEAELKILSE--------AAALRLQWRLQQGAIDTATLET 352
+ + YE E L + E + SE A LR R + ID + E
Sbjct: 360 RSKKRMIYERVNEFLE-DPSSVKEYEPFSELIHNAVELAEILREARRKRGAIIDIESDE- 417
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
+KV E+ + ++++ V + A RL+ E MI E IA L YR + +
Sbjct: 418 -VKVVLDENGQ-VVDI-VPRKRGIAERLIEEFMIRANETIAEIFDHAGLPFMYRVHEEPD 474
Query: 413 IDV--------------SAFAH-------------LPEGPVRSSAIVKIMRAAAIDFRKP 445
+ + F+H + + P+RSS ++R+
Sbjct: 475 PETIFQLKNYLEAMGIRAKFSHNIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSA 534
Query: 446 VRHGVLGLP--GYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
V G GL Y FTSPIRRY DL+ H +K L ++ F+ Q++ + ++
Sbjct: 535 VNIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLE-QNGYFTPEQIDKFSKVL 588
>gi|221231737|ref|YP_002510889.1| exoribonuclease R [Streptococcus pneumoniae ATCC 700669]
gi|415698181|ref|ZP_11457092.1| ribonuclease R [Streptococcus pneumoniae 459-5]
gi|415749376|ref|ZP_11477320.1| ribonuclease R [Streptococcus pneumoniae SV35]
gi|415752060|ref|ZP_11479171.1| ribonuclease R [Streptococcus pneumoniae SV36]
gi|418105035|ref|ZP_12742094.1| ribonuclease R [Streptococcus pneumoniae GA44500]
gi|418123247|ref|ZP_12760181.1| ribonuclease R [Streptococcus pneumoniae GA44378]
gi|418127833|ref|ZP_12764729.1| ribonuclease R [Streptococcus pneumoniae NP170]
gi|418137009|ref|ZP_12773851.1| ribonuclease R [Streptococcus pneumoniae GA11663]
gi|418178006|ref|ZP_12814590.1| ribonuclease R [Streptococcus pneumoniae GA41565]
gi|418182603|ref|ZP_12819164.1| ribonuclease R [Streptococcus pneumoniae GA43380]
gi|419473038|ref|ZP_14012889.1| ribonuclease R [Streptococcus pneumoniae GA13430]
gi|220674197|emb|CAR68725.1| putative exoribonuclease R [Streptococcus pneumoniae ATCC 700669]
gi|353778105|gb|EHD58575.1| ribonuclease R [Streptococcus pneumoniae GA44500]
gi|353797334|gb|EHD77669.1| ribonuclease R [Streptococcus pneumoniae GA44378]
gi|353800294|gb|EHD80608.1| ribonuclease R [Streptococcus pneumoniae NP170]
gi|353844780|gb|EHE24823.1| ribonuclease R [Streptococcus pneumoniae GA41565]
gi|353850840|gb|EHE30844.1| ribonuclease R [Streptococcus pneumoniae GA43380]
gi|353901636|gb|EHE77168.1| ribonuclease R [Streptococcus pneumoniae GA11663]
gi|379552545|gb|EHZ17634.1| ribonuclease R [Streptococcus pneumoniae GA13430]
gi|381309756|gb|EIC50589.1| ribonuclease R [Streptococcus pneumoniae SV36]
gi|381317186|gb|EIC57916.1| ribonuclease R [Streptococcus pneumoniae 459-5]
gi|381317670|gb|EIC58395.1| ribonuclease R [Streptococcus pneumoniae SV35]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|421211079|ref|ZP_15668063.1| ribonuclease R [Streptococcus pneumoniae 2070035]
gi|421231747|ref|ZP_15688392.1| ribonuclease R [Streptococcus pneumoniae 2080076]
gi|395573802|gb|EJG34389.1| ribonuclease R [Streptococcus pneumoniae 2070035]
gi|395596237|gb|EJG56459.1| ribonuclease R [Streptococcus pneumoniae 2080076]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVLSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|418173345|ref|ZP_12809959.1| ribonuclease R [Streptococcus pneumoniae GA41277]
gi|418216424|ref|ZP_12843148.1| ribonuclease R [Streptococcus pneumoniae Netherlands15B-37]
gi|353840044|gb|EHE20118.1| ribonuclease R [Streptococcus pneumoniae GA41277]
gi|353873475|gb|EHE53336.1| ribonuclease R [Streptococcus pneumoniae Netherlands15B-37]
Length = 765
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|418121042|ref|ZP_12757988.1| ribonuclease R [Streptococcus pneumoniae GA44194]
gi|353793869|gb|EHD74228.1| ribonuclease R [Streptococcus pneumoniae GA44194]
Length = 765
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|418089369|ref|ZP_12726526.1| ribonuclease R [Streptococcus pneumoniae GA43265]
gi|353762055|gb|EHD42618.1| ribonuclease R [Streptococcus pneumoniae GA43265]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|313112643|ref|ZP_07798301.1| ribonuclease R [Faecalibacterium cf. prausnitzii KLE1255]
gi|310625066|gb|EFQ08363.1| ribonuclease R [Faecalibacterium cf. prausnitzii KLE1255]
Length = 706
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 174/411 (42%), Gaps = 54/411 (13%)
Query: 120 KDSDRVLLAVAQRPDGKKNWMV-------YDQNGASCS---IKPQQVTFVVPGVEKFDHK 169
KD D+V + + QR + +++ V C+ + Q + P + + K
Sbjct: 168 KDGDKVAVEILQRGNRQEDHRVGVAMRFGSSDEAKRCAKALLYAQDIHSRFPDKVREEAK 227
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
+ N + +E + R DL L ++ ID E ++DDA+S + +G ++ +H+AD +
Sbjct: 228 KLEN-AEVSEKDTEGRMDLRALPIFTIDSAETKDIDDAISLTKTPEGGFELGVHIADVSN 286
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y++PGS D +A R TSV+ PM P++L+ SL +G + A + + L DG+
Sbjct: 287 YVKPGSELDNEAFNRATSVYYADQVVPMLPKQLSNGICSLNEGVLRLAFSCLMHLDKDGN 346
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEEE---------AELKILSEAAALRLQWRL 340
+ +Y S+I+ Y LL + ++E ++L + E R + R
Sbjct: 347 LIDYRFVKSVIRSRVKGVYSEINALLAGSADDELKGKYHEVLSQLPAMKELYGHRARLRK 406
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
++G +D + E +K+ ED I AM + E M+L + A +
Sbjct: 407 ERGCMDIESGE--VKLILDEDGHCIDVKKRTSGESEAM--IEEFMLLANQCAAHFARVKQ 462
Query: 401 LALPYRGQPQSNIDV--------------SAFAHLPEGPVRSSAIVKIMRAA-------- 438
+ YR + N + FA P SAI++ +R
Sbjct: 463 IPFVYRVHEEPNAEKLERLHTLLQACGINDHFAKDVPTPKELSAILEGVRGGPYEQIINT 522
Query: 439 --------AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
A+ KP H L L Y FTSPIRRY DL H + A L+G
Sbjct: 523 GMLRCMSKAVYEEKPKGHYGLVLKDYAHFTSPIRRYPDLAIHRIMTAQLKG 573
>gi|335430002|ref|ZP_08556897.1| ribonuclease R [Haloplasma contractile SSD-17B]
gi|334888418|gb|EGM26715.1| ribonuclease R [Haloplasma contractile SSD-17B]
Length = 756
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 154/337 (45%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+ +L R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ G
Sbjct: 235 TDKDLEGRRDLRDQTIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVSYYVREGDPI 294
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A RGTSV+L PM P +L+ SL N + +S + D G + E+ +
Sbjct: 295 DREAFNRGTSVYLVDRVIPMIPHRLSNGICSLNPQ--VNRLVLSCEMEIDQTGDVVEHEI 352
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDT 347
S+IK T +TY + E+L E+ E + + E + + R +GAI+
Sbjct: 353 FQSVIKTTERMTYNAVNEILLDKNEQTRERYKDLIPLFERMHELFKILKKRRTNRGAINF 412
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT------------- 394
T E RI V ED +P ++ V + D A +++ E M++ E +A
Sbjct: 413 ETNEARIIV--DEDGKPY-DIKVRKRRD-AEKIIEEFMLVANETVAEHFHWLNFPFIYRI 468
Query: 395 ------------YGSFNNLALPYRGQPQSNIDVSAFAHL-------PEGPVRSSAIVKIM 435
Y N L +G+ ++ + AF + PE V ++ +V+ M
Sbjct: 469 HEDPKPEKLKRFYKVLNGLGYKIKGK-ENTVHPKAFQGILETVKGEPEEAVVNTLLVRSM 527
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A A + V H L Y FTSPIRRY D + H
Sbjct: 528 -AKAKYSEQSVGHYGLATEFYTHFTSPIRRYPDTIVH 563
>gi|289167819|ref|YP_003446088.1| exoribonuclease R [Streptococcus mitis B6]
gi|288907386|emb|CBJ22223.1| exoribonuclease R [Streptococcus mitis B6]
Length = 783
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 159/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ DG + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKDGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K + + L + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRKRGIAERMIESFMLMANETVAEH--FSKLELPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMR + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRTVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|148992889|ref|ZP_01822508.1| SsrA-binding protein [Streptococcus pneumoniae SP9-BS68]
gi|168490206|ref|ZP_02714405.1| ribonuclease R [Streptococcus pneumoniae SP195]
gi|417678927|ref|ZP_12328324.1| ribonuclease R [Streptococcus pneumoniae GA17570]
gi|418125600|ref|ZP_12762510.1| ribonuclease R [Streptococcus pneumoniae GA44511]
gi|418191520|ref|ZP_12828024.1| ribonuclease R [Streptococcus pneumoniae GA47388]
gi|418214147|ref|ZP_12840882.1| ribonuclease R [Streptococcus pneumoniae GA54644]
gi|418234172|ref|ZP_12860751.1| ribonuclease R [Streptococcus pneumoniae GA08780]
gi|419484160|ref|ZP_14023936.1| ribonuclease R [Streptococcus pneumoniae GA43257]
gi|419508045|ref|ZP_14047698.1| ribonuclease R [Streptococcus pneumoniae GA49542]
gi|421220124|ref|ZP_15676974.1| ribonuclease R [Streptococcus pneumoniae 2070425]
gi|421222451|ref|ZP_15679242.1| ribonuclease R [Streptococcus pneumoniae 2070531]
gi|421278750|ref|ZP_15729558.1| ribonuclease R [Streptococcus pneumoniae GA17301]
gi|421294071|ref|ZP_15744794.1| ribonuclease R [Streptococcus pneumoniae GA56113]
gi|421300842|ref|ZP_15751512.1| ribonuclease R [Streptococcus pneumoniae GA19998]
gi|147928341|gb|EDK79357.1| SsrA-binding protein [Streptococcus pneumoniae SP9-BS68]
gi|183571427|gb|EDT91955.1| ribonuclease R [Streptococcus pneumoniae SP195]
gi|332073306|gb|EGI83785.1| ribonuclease R [Streptococcus pneumoniae GA17570]
gi|353797566|gb|EHD77899.1| ribonuclease R [Streptococcus pneumoniae GA44511]
gi|353857421|gb|EHE37384.1| ribonuclease R [Streptococcus pneumoniae GA47388]
gi|353871430|gb|EHE51301.1| ribonuclease R [Streptococcus pneumoniae GA54644]
gi|353888417|gb|EHE68191.1| ribonuclease R [Streptococcus pneumoniae GA08780]
gi|379583671|gb|EHZ48548.1| ribonuclease R [Streptococcus pneumoniae GA43257]
gi|379611763|gb|EHZ76485.1| ribonuclease R [Streptococcus pneumoniae GA49542]
gi|395588401|gb|EJG48731.1| ribonuclease R [Streptococcus pneumoniae 2070425]
gi|395588619|gb|EJG48947.1| ribonuclease R [Streptococcus pneumoniae 2070531]
gi|395880183|gb|EJG91236.1| ribonuclease R [Streptococcus pneumoniae GA17301]
gi|395894361|gb|EJH05341.1| ribonuclease R [Streptococcus pneumoniae GA56113]
gi|395898402|gb|EJH09346.1| ribonuclease R [Streptococcus pneumoniae GA19998]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVLSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|418166600|ref|ZP_12803256.1| ribonuclease R [Streptococcus pneumoniae GA17971]
gi|353830196|gb|EHE10326.1| ribonuclease R [Streptococcus pneumoniae GA17971]
Length = 765
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|422855107|ref|ZP_16901765.1| ribonuclease R [Streptococcus sanguinis SK1]
gi|422862090|ref|ZP_16908722.1| ribonuclease R [Streptococcus sanguinis SK408]
gi|327463084|gb|EGF09405.1| ribonuclease R [Streptococcus sanguinis SK1]
gi|327474685|gb|EGF20090.1| ribonuclease R [Streptococcus sanguinis SK408]
Length = 782
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 157/335 (46%), Gaps = 45/335 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L R DL + ID ++A +LDDA+ L++G ++ +H+AD + Y++ GS DK+
Sbjct: 247 DLEGRLDLRDEITFTIDGEDAKDLDDAVHIKLLKNGNFELGVHIADVSYYVKEGSELDKE 306
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNS 298
A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++ +
Sbjct: 307 ALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVIKHTITQT 364
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTATLE 351
+IK T+ +TY +++ N E+ + K + + +Q R ++GA++ T E
Sbjct: 365 VIKTTFRMTYSDVNDIIAGNQEKAEQFKEIVPSIDSMVQLHEILESMRFKRGALNFDTNE 424
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR----- 406
+I V P +N+ + Q A R++ M++ E +A + + NL YR
Sbjct: 425 AKIMVNKEGRP---VNIVLR-QRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIHEEP 480
Query: 407 --GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV-------------- 446
+ Q ID S+F G S A+ IM + + V
Sbjct: 481 KAEKVQKFIDYASSFGIRIYGTANSMSQQALQDIMESVKDQPYEDVLSMMLLRSMQQARY 540
Query: 447 ---RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H V+
Sbjct: 541 SEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVR 575
>gi|421280962|ref|ZP_15731760.1| ribonuclease R [Streptococcus pneumoniae GA04672]
gi|395882123|gb|EJG93170.1| ribonuclease R [Streptococcus pneumoniae GA04672]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|387626327|ref|YP_006062502.1| putative exoribonuclease R [Streptococcus pneumoniae INV104]
gi|417693893|ref|ZP_12343082.1| ribonuclease R [Streptococcus pneumoniae GA47901]
gi|444382159|ref|ZP_21180363.1| ribonuclease R [Streptococcus pneumoniae PCS8106]
gi|444384812|ref|ZP_21182903.1| ribonuclease R [Streptococcus pneumoniae PCS8203]
gi|301794112|emb|CBW36518.1| putative exoribonuclease R [Streptococcus pneumoniae INV104]
gi|332204976|gb|EGJ19041.1| ribonuclease R [Streptococcus pneumoniae GA47901]
gi|444251572|gb|ELU58041.1| ribonuclease R [Streptococcus pneumoniae PCS8203]
gi|444253119|gb|ELU59578.1| ribonuclease R [Streptococcus pneumoniae PCS8106]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|289548623|ref|YP_003473611.1| ribonuclease R [Thermocrinis albus DSM 14484]
gi|289182240|gb|ADC89484.1| ribonuclease R [Thermocrinis albus DSM 14484]
Length = 700
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 151/344 (43%), Gaps = 53/344 (15%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
L R+DL + ID + A + DDA++ R +G ++++H+AD + Y+ GS D++
Sbjct: 237 ELGKRRDLRQQVCFTIDPERARDFDDAVAIERTPEGYYRLWVHIADVSYYVREGSAIDRE 296
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RG + +LP M PEKL+ + SL+ E A T ++ G + Y + S+I
Sbjct: 297 AFRRGFTFYLPDRAIHMLPEKLSADLCSLKPNEDRLAFTCEMLFSPKGDLISYDIYESVI 356
Query: 301 KPTYMLTYESATELL-----------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTAT 349
+ LTY+ A L+ HL L+ + + + + R ++G+ID
Sbjct: 357 RSKARLTYDEALRLIVGDPALENKYPHLT----EPLRTMEDLYRILSRRRWERGSIDFDL 412
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR 406
ET + ++ E EPI IN Y + A R++ MI E +A + N P YR
Sbjct: 413 PETELLLS--EQGEPIAINPY---ERHVAHRIIEHFMISANETVALH--LQNAGYPCLYR 465
Query: 407 GQPQSNID-----VSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRH------------ 448
+ + + A L + S K + DF +P H
Sbjct: 466 VHERPDPKKVENLLEILAGLGYTVKKPSLEPKFFQKIIEDFEGRPEEHLVRFLTLRAMMR 525
Query: 449 --------GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGE 482
G GL Y FTSPIRRY DL+ H +K LRGE
Sbjct: 526 AHYSPHNVGHFGLASQHYTHFTSPIRRYADLVVHRLLKKALRGE 569
>gi|347534233|ref|YP_004840903.1| ribonuclease R 1 [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504289|gb|AEN98971.1| Ribonuclease R 1 [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 767
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 155/329 (47%), Gaps = 48/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+T + ID +E+ +LDDA++A +L +G + +H+AD + Y++PG++ D++A KR
Sbjct: 257 REDITDQDLVTIDAEESKDLDDAVTAWKLPNGNYHLGVHIADVSHYVKPGTMLDREAYKR 316
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS +L PM P +L+ SL +GE+ ++ + + G + + V S+++
Sbjct: 317 GTSCYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCDMEITPQGKVVKSRVHPSVMRSKA 376
Query: 305 MLTYESATELLHLNLEEEAELK---------ILSEAAALRLQWRLQQGAIDTATLETRIK 355
+TY + E++ N + + K ++E + R ++GAID E +I
Sbjct: 377 RMTYNAVNEIIE-NKDADTRKKYADLVPMFETMNELHKILYNARRRRGAIDFNDNEAKI- 434
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
+ N E I L A+ RL+ M+ E +A ++N L +P+ + D
Sbjct: 435 IVNKEGHPIDIQLRTRGTAE---RLIESFMLAANETVAE--TYNKLKVPFIYRIHEVPDA 489
Query: 415 ---------VSAFA--------HL-PEG-----------PVRSSAIVKIMRA--AAIDFR 443
++AF HL P+ PV + V ++R+ A
Sbjct: 490 TRVKEFFEFLTAFGINIKADTDHLEPKTLQNILSKVAGKPVEAMVSVMLLRSMQQAKYSD 549
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K V H LG Y FTSPIRRY D+ H
Sbjct: 550 KCVGHFGLGAKYYTHFTSPIRRYPDMFIH 578
>gi|417312544|ref|ZP_12099256.1| ribonuclease R [Streptococcus pneumoniae GA04375]
gi|418227554|ref|ZP_12854173.1| ribonuclease R [Streptococcus pneumoniae 3063-00]
gi|419438072|ref|ZP_13978142.1| ribonuclease R [Streptococcus pneumoniae GA13499]
gi|327389252|gb|EGE87597.1| ribonuclease R [Streptococcus pneumoniae GA04375]
gi|353883155|gb|EHE62964.1| ribonuclease R [Streptococcus pneumoniae 3063-00]
gi|379538077|gb|EHZ03258.1| ribonuclease R [Streptococcus pneumoniae GA13499]
Length = 784
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|419523232|ref|ZP_14062812.1| ribonuclease R [Streptococcus pneumoniae GA13723]
gi|379557963|gb|EHZ23000.1| ribonuclease R [Streptococcus pneumoniae GA13723]
Length = 765
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|357639310|ref|ZP_09137183.1| ribonuclease R [Streptococcus urinalis 2285-97]
gi|418418176|ref|ZP_12991367.1| ribonuclease R [Streptococcus urinalis FB127-CNA-2]
gi|357587764|gb|EHJ57172.1| ribonuclease R [Streptococcus urinalis 2285-97]
gi|410869275|gb|EKS17238.1| ribonuclease R [Streptococcus urinalis FB127-CNA-2]
Length = 790
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 152/338 (44%), Gaps = 51/338 (15%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y++ GS DK+
Sbjct: 248 DFQGRIDLRQEITFTIDGADAKDLDDAVHIKRLPNGNFELGVHIADVSYYVKEGSALDKE 307
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVDNS 298
A+KRGTSV++ PM PE+L+ SL + +T S ++ + DG + + + S
Sbjct: 308 AVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEINKDGKVLHHQIAQS 365
Query: 299 IIKPTYMLTYESATELLHLNLEE-------EAELKILSEAAALRLQWRLQQGAIDTATLE 351
+IK TY +TY E++ N E +K ++E + + R+++ A++ T E
Sbjct: 366 VIKTTYRMTYNDVNEMIAGNEEVINQYSKISESVKDMTELHHILEKMRVRRCALNFDTSE 425
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP 409
RI V + P I V Q A R++ M+ E +A + + L YR +P
Sbjct: 426 ARIIVNDKGMPVDI----VLRQRGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEEP 481
Query: 410 Q----------------------SNIDVSAFAHL-------PEGPVRSSAIVKIMRAAAI 440
+ S I A P V + +++ M+ A
Sbjct: 482 KAEKLQKFMDYASIFGIQIHGTASKISQEALQEFMAKVEGKPGAEVLNMMLLRSMQQARY 541
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 542 SEHN---HGHYGLAAEYYTHFTSPIRRYPDLLVHRMIR 576
>gi|257785072|ref|YP_003180289.1| VacB and RNase II family 3'-5' exoribonuclease [Atopobium parvulum
DSM 20469]
gi|257473579|gb|ACV51698.1| VacB and RNase II family 3'-5' exoribonuclease [Atopobium parvulum
DSM 20469]
Length = 670
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 170/376 (45%), Gaps = 54/376 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
AED +R DL +D +A + DDA+ A +L+DG ++++H+AD Y++ S
Sbjct: 199 AEDA--SRHDLREELCITVDPADAKDFDDAVGARKLEDGSFELWVHIADVAHYVKWDSPI 256
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R S +L PM PEKL + SLR E A++V + L S G I + N
Sbjct: 257 DLEARMRTCSAYLVDRVLPMLPEKLCNDVCSLRPAEDRLAMSVKMKLSSSGKILGATAMN 316
Query: 298 SIIKPTYMLTYESATELLHLNL---------EEEAELK----ILSEAAALRLQWRLQQGA 344
S+I+ L+Y+ L ++ E+ +K +L++ ALR + R ++G+
Sbjct: 317 SVIRSRARLSYDQVDSYLQGDVSALDSAVSREDAGAIKEMIDVLNQIRALREEIREKRGS 376
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ++ETR+ + P + + V ++ A L+ E M+ E++A S ++L
Sbjct: 377 VDFESVETRVVLDENNKP---VGVSVRERTQ-ATGLIEEAMLAANESVAHMLSQHDLESA 432
Query: 405 YRGQPQ------------------------SNIDVSAFAHLPEG-----PVRSSAIV--K 433
YR Q S I + L E R S +V +
Sbjct: 433 YRVHEQPSPESLKLAITPLVAMGALEPDVASRIAIGDQTALQEALESVHGTRYSRVVNAQ 492
Query: 434 IMRAAAIDFRKPVRHG--VLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQL 491
++RA P G LG Y FTSPIRRY D++ H +K L G++ + +L
Sbjct: 493 LLRAQKRAIYLPTNQGHFALGADAYCHFTSPIRRYPDVIVHRTLKRLLCGQTA--ARAEL 550
Query: 492 EGMASIVNMQTRIARR 507
+A I + + R+
Sbjct: 551 SALADICSTCSEQERK 566
>gi|388580087|gb|EIM20404.1| RNB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 939
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 123/487 (25%), Positives = 215/487 (44%), Gaps = 69/487 (14%)
Query: 153 PQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMR 212
P+ ++ VP KD +N + K +R DL + +ID ++DDAL A
Sbjct: 441 PEGESWTVPS------KDSTNPIWK------DRVDLRDEVICSIDPPGCTDIDDALHAKY 488
Query: 213 LQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQG 272
L +G I+ +H+AD + ++ P + D +A RGT+V+L M P L SLR
Sbjct: 489 LPNGNIEAGVHIADVSHFVHPDTTMDLEAASRGTTVYLVDKRIDMLPSLLGTNLCSLRPH 548
Query: 273 EVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESA---TELLHLNLEEEAELKILS 329
A +V L+S+ I + S+I TYE A + LN +++L+
Sbjct: 549 VERLAFSVIWELNSNAEIVDIKFHKSVIASKSAFTYEEAQLRKDDKSLNDPLTVAIRLLN 608
Query: 330 EAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG 389
A Q RL++GA+D A+ E +I + + E EPI + ++ +LV E M+L
Sbjct: 609 HIAIQLKQKRLERGALDLASPEVKIHLDSSESTEPID--VEQKESKETNKLVEEFMLLAN 666
Query: 390 EAIAT--YGSFNNLALPYRGQP-----------------QSNIDVSAFAHLP-------- 422
+AT +F ++ R P N+DVS+ L
Sbjct: 667 CTVATKINETFPGTSVLRRHLPPPKQNFEGLQEILFKRKNLNLDVSSSGALAKSLDNCVD 726
Query: 423 --EGPVRSSAIVKIMRA----AAIDF------RKPVRHGVLGLPGYVQFTSPIRRYMDLL 470
EG + +V+IM +A F ++ H L P Y FTSPIRRY D+L
Sbjct: 727 KQEGSFNT--LVRIMATRCMLSAEYFCSGSVSKETFSHYGLAAPIYTHFTSPIRRYADIL 784
Query: 471 AHYQVKACLRGE---SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKE 527
AH Q+ A + + + + +E + +N + R+ + S+ +++ ++ + E
Sbjct: 785 AHRQLSAAINYQPLHNSLHNKSYVESIMDNINKRHRLGQHAGRASVEFYVALAIKAR-NE 843
Query: 528 RQ-----YRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQ-IGDEVEVKVEEAHPRDDI 581
RQ +A ++R ++ A+ + +GL+ + I ++ ++ V++A
Sbjct: 844 RQGGFVREKAHVIRTFRN-GLAVFIPTLGLEGLITFKKPIEFISEDFKIIVQDASSNQHT 902
Query: 582 IYLKEVV 588
I + +VV
Sbjct: 903 ISVFDVV 909
>gi|418112329|ref|ZP_12749331.1| ribonuclease R [Streptococcus pneumoniae GA41538]
gi|353784195|gb|EHD64616.1| ribonuclease R [Streptococcus pneumoniae GA41538]
Length = 784
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQACYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|254993184|ref|ZP_05275374.1| exoribonuclease RNase-R [Listeria monocytogenes FSL J2-064]
Length = 793
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 179/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLSNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQHLAEILHRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|419503786|ref|ZP_14043455.1| ribonuclease R [Streptococcus pneumoniae GA47760]
gi|379606463|gb|EHZ71210.1| ribonuclease R [Streptococcus pneumoniae GA47760]
Length = 765
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|417886802|ref|ZP_12530946.1| ribonuclease R [Lactobacillus oris F0423]
gi|341593193|gb|EGS36050.1| ribonuclease R [Lactobacillus oris F0423]
Length = 786
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 48/333 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD+T+ + ID E+ +LDDA+ A ++ +G + +H+AD + Y++PG+ DK+A KR
Sbjct: 257 RKDITNQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVSHYVQPGTPLDKEAFKR 316
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P++L+ SL GE A++ + + G + ++ + S++K
Sbjct: 317 GTSVYLTDRVVPMLPKRLSNGICSLSPGEERLAMSCEMEIDEQGRVVKHRIFPSVMKSHA 376
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY++ +L + ++ + + + E + L+ R ++GAID E +I V
Sbjct: 377 RMTYKAVNRILEAHDQKTMDQYKDLVPMFETMGELHKILLKSRKRRGAIDFEAPEAKIIV 436
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
+ P I++ + D+ A R++ M+ E +A + ++ YR + D V
Sbjct: 437 DDKGHP---IDIQLRDRG-LAERMIESFMLAANETVAEHYFNEHVPFLYRIHETPDKDRV 492
Query: 416 SAF----------AHLPEGPVRSSAIVKIMRAAAIDFRKP-------------------- 445
+F H V+ + K+++ A KP
Sbjct: 493 KSFVDFLNVFGIDVHGDINNVKPKMLQKVLKDVA---GKPEEQMVQVMMLRSMQQAKYSD 549
Query: 446 --VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+ H LG Y FTSPIRRY D H +K
Sbjct: 550 EELGHFGLGAKYYTHFTSPIRRYPDDTVHRLIK 582
>gi|149002527|ref|ZP_01827461.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP14-BS69]
gi|225861138|ref|YP_002742647.1| ribonuclease R [Streptococcus pneumoniae Taiwan19F-14]
gi|237650876|ref|ZP_04525128.1| ribonuclease R [Streptococcus pneumoniae CCRI 1974]
gi|298229549|ref|ZP_06963230.1| ribonuclease R [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254482|ref|ZP_06978068.1| ribonuclease R [Streptococcus pneumoniae str. Canada MDR_19A]
gi|298503016|ref|YP_003724956.1| exoribonuclease R [Streptococcus pneumoniae TCH8431/19A]
gi|387788354|ref|YP_006253422.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
ST556]
gi|418085039|ref|ZP_12722223.1| ribonuclease R [Streptococcus pneumoniae GA47281]
gi|418093802|ref|ZP_12730931.1| ribonuclease R [Streptococcus pneumoniae GA49138]
gi|418100800|ref|ZP_12737886.1| ribonuclease R [Streptococcus pneumoniae 7286-06]
gi|418118735|ref|ZP_12755692.1| ribonuclease R [Streptococcus pneumoniae GA18523]
gi|418141560|ref|ZP_12778373.1| ribonuclease R [Streptococcus pneumoniae GA13455]
gi|418143785|ref|ZP_12780585.1| ribonuclease R [Streptococcus pneumoniae GA13494]
gi|418150439|ref|ZP_12787190.1| ribonuclease R [Streptococcus pneumoniae GA14798]
gi|418152704|ref|ZP_12789444.1| ribonuclease R [Streptococcus pneumoniae GA16121]
gi|418157560|ref|ZP_12794276.1| ribonuclease R [Streptococcus pneumoniae GA16833]
gi|418164833|ref|ZP_12801503.1| ribonuclease R [Streptococcus pneumoniae GA17371]
gi|418171430|ref|ZP_12808054.1| ribonuclease R [Streptococcus pneumoniae GA19451]
gi|418196006|ref|ZP_12832485.1| ribonuclease R [Streptococcus pneumoniae GA47688]
gi|418197797|ref|ZP_12834260.1| ribonuclease R [Streptococcus pneumoniae GA47778]
gi|418223495|ref|ZP_12850135.1| ribonuclease R [Streptococcus pneumoniae 5185-06]
gi|419424996|ref|ZP_13965195.1| ribonuclease R [Streptococcus pneumoniae 7533-05]
gi|419427359|ref|ZP_13967542.1| ribonuclease R [Streptococcus pneumoniae 5652-06]
gi|419429131|ref|ZP_13969298.1| ribonuclease R [Streptococcus pneumoniae GA11856]
gi|419435838|ref|ZP_13975931.1| ribonuclease R [Streptococcus pneumoniae 8190-05]
gi|419444812|ref|ZP_13984827.1| ribonuclease R [Streptococcus pneumoniae GA19923]
gi|419446956|ref|ZP_13986961.1| ribonuclease R [Streptococcus pneumoniae 7879-04]
gi|419451311|ref|ZP_13991297.1| ribonuclease R [Streptococcus pneumoniae EU-NP02]
gi|419457356|ref|ZP_13997301.1| ribonuclease R [Streptococcus pneumoniae GA02254]
gi|419501701|ref|ZP_14041387.1| ribonuclease R [Streptococcus pneumoniae GA47628]
gi|419518764|ref|ZP_14058371.1| ribonuclease R [Streptococcus pneumoniae GA08825]
gi|419527635|ref|ZP_14067178.1| ribonuclease R [Streptococcus pneumoniae GA17719]
gi|421287690|ref|ZP_15738455.1| ribonuclease R [Streptococcus pneumoniae GA58771]
gi|147759464|gb|EDK66456.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP14-BS69]
gi|225727513|gb|ACO23364.1| ribonuclease R [Streptococcus pneumoniae Taiwan19F-14]
gi|298238611|gb|ADI69742.1| exoribonuclease R [Streptococcus pneumoniae TCH8431/19A]
gi|353758734|gb|EHD39322.1| ribonuclease R [Streptococcus pneumoniae GA47281]
gi|353765678|gb|EHD46220.1| ribonuclease R [Streptococcus pneumoniae GA49138]
gi|353772736|gb|EHD53241.1| ribonuclease R [Streptococcus pneumoniae 7286-06]
gi|353790687|gb|EHD71068.1| ribonuclease R [Streptococcus pneumoniae GA18523]
gi|353805811|gb|EHD86085.1| ribonuclease R [Streptococcus pneumoniae GA13455]
gi|353809526|gb|EHD89786.1| ribonuclease R [Streptococcus pneumoniae GA13494]
gi|353815947|gb|EHD96159.1| ribonuclease R [Streptococcus pneumoniae GA14798]
gi|353819349|gb|EHD99547.1| ribonuclease R [Streptococcus pneumoniae GA16121]
gi|353824008|gb|EHE04182.1| ribonuclease R [Streptococcus pneumoniae GA16833]
gi|353829694|gb|EHE09825.1| ribonuclease R [Streptococcus pneumoniae GA17371]
gi|353835167|gb|EHE15261.1| ribonuclease R [Streptococcus pneumoniae GA19451]
gi|353861457|gb|EHE41394.1| ribonuclease R [Streptococcus pneumoniae GA47688]
gi|353863953|gb|EHE43872.1| ribonuclease R [Streptococcus pneumoniae GA47778]
gi|353878293|gb|EHE58123.1| ribonuclease R [Streptococcus pneumoniae 5185-06]
gi|379138096|gb|AFC94887.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
ST556]
gi|379532354|gb|EHY97583.1| ribonuclease R [Streptococcus pneumoniae GA02254]
gi|379551079|gb|EHZ16174.1| ribonuclease R [Streptococcus pneumoniae GA11856]
gi|379565788|gb|EHZ30779.1| ribonuclease R [Streptococcus pneumoniae GA17719]
gi|379572505|gb|EHZ37462.1| ribonuclease R [Streptococcus pneumoniae GA19923]
gi|379602062|gb|EHZ66834.1| ribonuclease R [Streptococcus pneumoniae GA47628]
gi|379614496|gb|EHZ79206.1| ribonuclease R [Streptococcus pneumoniae 7879-04]
gi|379615973|gb|EHZ80674.1| ribonuclease R [Streptococcus pneumoniae 8190-05]
gi|379618812|gb|EHZ83487.1| ribonuclease R [Streptococcus pneumoniae 5652-06]
gi|379620325|gb|EHZ84984.1| ribonuclease R [Streptococcus pneumoniae 7533-05]
gi|379623016|gb|EHZ87650.1| ribonuclease R [Streptococcus pneumoniae EU-NP02]
gi|379641743|gb|EIA06278.1| ribonuclease R [Streptococcus pneumoniae GA08825]
gi|395888302|gb|EJG99314.1| ribonuclease R [Streptococcus pneumoniae GA58771]
Length = 784
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|381205827|ref|ZP_09912898.1| ribonuclease R [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 739
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 167/379 (44%), Gaps = 43/379 (11%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R D L ID +A + DDA+ A +DG KVY+ +AD Y+ PGS D++A
Sbjct: 270 SRVDQRDLGFVTIDGIKARDFDDAVFAKSNEDGSWKVYVAIADVAHYVRPGSAIDQEAYL 329
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+ PT PM PE L+ SL+ +T +++ S G + Y + SII+
Sbjct: 330 RGTSVYFPTHAIPMLPENLSNNLCSLKPDVNRLTLTCEMLIDSAGWVNSYRIYESIIRSR 389
Query: 304 YMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
L Y+ + L L + L ++++ A R ++GAI+ + +I++
Sbjct: 390 ARLIYKDVADFLDTGLTKTIRNKEILDNLIVMNDVARALEDKRTKRGAINFNFADQKIEL 449
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-------- 408
D + I ++ + +M+L+ + M+ E +A + + N L YR
Sbjct: 450 ----DDQNQIVSISKEFSSSSMKLIEQFMLEANEIVAKHCTGNRLPALYRVHSSPDLSRL 505
Query: 409 ---------------PQSNIDVSAFAHLPEG----PVRSSAIVKIMRAAAIDFRKPVRHG 449
P S ID F + E ++ + ++R+ A+ + G
Sbjct: 506 ERLKMVFQRFNIPVPPNSLIDSGQFNKVLESIEKLTNKNQLQIILLRSMALATYETNNQG 565
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR---GESPPFSAGQLEGMASIVNMQTRI 504
GL Y FTSPIRRY DL+ H +K L G +P ++ MA ++ Q R
Sbjct: 566 HFGLGAKHYSHFTSPIRRYPDLVTHRALKHELHAKLGINPFPNSNTSVLMAEYLSEQERR 625
Query: 505 ARRLSNTSLRYWIIEFLRR 523
A + S+ + F+ +
Sbjct: 626 AEKAELESVSLLKVNFMEK 644
>gi|418146197|ref|ZP_12782979.1| ribonuclease R [Streptococcus pneumoniae GA13637]
gi|353814993|gb|EHD95215.1| ribonuclease R [Streptococcus pneumoniae GA13637]
Length = 784
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|260770311|ref|ZP_05879244.1| exoribonuclease II [Vibrio furnissii CIP 102972]
gi|260615649|gb|EEX40835.1| exoribonuclease II [Vibrio furnissii CIP 102972]
Length = 668
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 179/425 (42%), Gaps = 70/425 (16%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNG-----------ASCSIKPQQVTFV 159
+KGL E +D D V+ + + P + D NG A I P VT
Sbjct: 116 KKGLNPEHFQDGDWVVAHLTRHP-------LKDDNGFFAEISEKITDADDKIAPWWVTLA 168
Query: 160 VPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK 219
+ + I ++ K +D L R DLT + ID + ++DDAL A +L DG
Sbjct: 169 ENDLPNCEPAGIEHWELK-DDADLTRVDLTDVPFVTIDGESTKDMDDALYAKKLDDGSFA 227
Query: 220 VYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVT 279
+ I +ADPT YI P DK A +RG +++LP PM P LA E SL + EV A+
Sbjct: 228 LTIAIADPTAYITPEDDMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIENEVRPALC 287
Query: 280 VSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKIL 328
+V + DG I + + N IK L Y+ ++ L + + ++ L
Sbjct: 288 CTVTVDKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSDAWQPTDEIAQVVRDL 345
Query: 329 SEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI-- 386
E + R WR + + R +++ D ++ ++ D A RLV E MI
Sbjct: 346 YEFSQARANWRETHAVVFPDRPDYRFELSEDND---VVAIHA-DSRRTANRLVEESMITA 401
Query: 387 -LCG----EAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAA-- 439
+C +A G FN A +P+ D+ A + ++ + AA
Sbjct: 402 NICAGKTLQAAFGTGVFNTHA---GFKPEKVADIVALMNSHGAECNEESVNTVEGFAALR 458
Query: 440 ----------IDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
+D R +P+ H +GL Y +TSPIR+Y D++ H +KA
Sbjct: 459 RWLSTQETSYLDNRIRKSQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRMLKA 518
Query: 478 CLRGE 482
+ G+
Sbjct: 519 HILGK 523
>gi|46908622|ref|YP_015011.1| ribonuclease R [Listeria monocytogenes serotype 4b str. F2365]
gi|47093651|ref|ZP_00231407.1| ribonuclease R, putative [Listeria monocytogenes str. 4b H7858]
gi|258611891|ref|ZP_05242896.2| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|300765222|ref|ZP_07075207.1| ribonuclease R [Listeria monocytogenes FSL N1-017]
gi|46881894|gb|AAT05188.1| putative ribonuclease R [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017986|gb|EAL08763.1| ribonuclease R, putative [Listeria monocytogenes str. 4b H7858]
gi|258606921|gb|EEW19529.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|300514043|gb|EFK41105.1| ribonuclease R [Listeria monocytogenes FSL N1-017]
Length = 783
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 235 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 294
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 295 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 354
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 355 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 414
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 415 RVVVDEDGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 470
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 471 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 530
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 531 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 587
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 588 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 642
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 643 EGLVHVSAMKGD 654
>gi|424715262|ref|YP_007015977.1| Ribonuclease R [Listeria monocytogenes serotype 4b str. LL195]
gi|424014446|emb|CCO64986.1| Ribonuclease R [Listeria monocytogenes serotype 4b str. LL195]
Length = 803
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 255 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 314
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 315 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 374
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 375 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 434
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 435 RVVVDEDGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 490
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 491 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 550
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 551 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 607
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 608 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 662
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 663 EGLVHVSAMKGD 674
>gi|261212544|ref|ZP_05926829.1| exoribonuclease II [Vibrio sp. RC341]
gi|260838475|gb|EEX65131.1| exoribonuclease II [Vibrio sp. RC341]
Length = 672
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 123/456 (26%), Positives = 198/456 (43%), Gaps = 55/456 (12%)
Query: 76 VMQELVAIRKRLRVF-AKVKVSSGELLEDKLENQV-LQKGLLLEFKKDSDRVLLAVAQRP 133
+ Q L R+++F K+ V+ KL + +KGL ++ D V+ + + P
Sbjct: 79 IEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHP 138
Query: 134 ----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLT 189
DG + + A+ I P VT + + I ++ Q +D L R+DLT
Sbjct: 139 LKGDDGFFAQISHKITDANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLT 197
Query: 190 HLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVF 249
L ID + ++DDAL A +L +G + I +ADPT YI P DK A +RG +++
Sbjct: 198 ALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIY 257
Query: 250 LPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYML 306
LP PM P LA E SL + +V A+ SV + DG I + + N IK L
Sbjct: 258 LPGRNIPMLPRDLADELCSLMENQVRPALCCSVTVSKDGVIGDDIRFFAAN--IKSHARL 315
Query: 307 TYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
Y+ ++ L E+ + ++ L + R WR + + R +++
Sbjct: 316 VYDHLSDWLETGHSEQWQPSEDIAQVVRDLYAFSQARATWRETHAVVFPDRPDYRFELSA 375
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMI---LCG----EAIATYGSFNNLA--------- 402
D ++ ++ D A RLV E MI +C +A G FN A
Sbjct: 376 DND---VVAIHA-DMRRTANRLVEESMITANICAGKTLQATFGLGVFNTHAGFKAEKMAD 431
Query: 403 ----LPYRGQPQSNID----VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+ G P ++ + V FA L E + I K + I +P+ H
Sbjct: 432 VVELMAAHGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPH 490
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 491 FAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|15900852|ref|NP_345456.1| VacB/Rnb family exoribonuclease [Streptococcus pneumoniae TIGR4]
gi|111657964|ref|ZP_01408671.1| hypothetical protein SpneT_02000853 [Streptococcus pneumoniae
TIGR4]
gi|410476415|ref|YP_006743174.1| exoribonuclease R [Streptococcus pneumoniae gamPNI0373]
gi|421247236|ref|ZP_15703723.1| ribonuclease R [Streptococcus pneumoniae 2082170]
gi|14972450|gb|AAK75096.1| exoribonuclease, VacB/Rnb family [Streptococcus pneumoniae TIGR4]
gi|395614872|gb|EJG74890.1| ribonuclease R [Streptococcus pneumoniae 2082170]
gi|406369360|gb|AFS43050.1| exoribonuclease R [Streptococcus pneumoniae gamPNI0373]
Length = 784
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 160/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G ++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLEFGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|343500287|ref|ZP_08738183.1| exoribonuclease II [Vibrio tubiashii ATCC 19109]
gi|418480786|ref|ZP_13049841.1| exoribonuclease II [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342820666|gb|EGU55484.1| exoribonuclease II [Vibrio tubiashii ATCC 19109]
gi|384571546|gb|EIF02077.1| exoribonuclease II [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 667
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 162/347 (46%), Gaps = 48/347 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D L R D+TH+ ID + ++DDAL A + + G ++ I +ADPT YI P S D
Sbjct: 187 DDADLERTDMTHIPFVTIDGESTKDMDDALHAKKTESGDFELTIAIADPTAYITPDSDMD 246
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDN 297
K A +RG +++LP PM P LA + SL +GE A+ SV + +G I +
Sbjct: 247 KVARERGFTIYLPGRNIPMLPRDLADDLCSLIEGEARPALCCSVTVTKEGVIGDDIKFFA 306
Query: 298 SIIKPTYMLTYESATELLHLN-------LEEEAE-LKILSEAAALRLQWRLQQGAIDTAT 349
+ IK L Y+ ++ + EE AE ++ L + + R +WR +
Sbjct: 307 ANIKSHARLAYDHVSDWIENGSSDAWQPSEEIAEVVRDLYDFSRARAEWRETHAVVFPDR 366
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAIATYGSFNNLALPY 405
+ R +++ D ++ ++ D A RLV E MI +C G+ + + SFN+
Sbjct: 367 PDYRFELSEDND---VVAIHA-DMRRSANRLVEEAMITANICAGKTLQS--SFNSGVFNT 420
Query: 406 RG--QPQSNIDVSAFAHLPEG--PVRSSAIVKIMRAAA------------IDFR------ 443
+P+ DV + PEG P + +I + AA +D R
Sbjct: 421 HAGFKPEKIEDVINLVN-PEGELPFTAESIATLEGFAALRRWLGSQETSYLDNRIRKAQA 479
Query: 444 ------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+P+ H +GL Y +TSPIR+Y D++ H +KA + G+ P
Sbjct: 480 YSEIGNQPLPHYAMGLDLYATWTSPIRKYGDMINHRMLKAHILGKEP 526
>gi|423313194|ref|ZP_17291130.1| ribonuclease R [Bacteroides vulgatus CL09T03C04]
gi|392686408|gb|EIY79714.1| ribonuclease R [Bacteroides vulgatus CL09T03C04]
Length = 715
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 174/381 (45%), Gaps = 42/381 (11%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R+D ++ + ID +A + DDALS ++ G +V +H+AD T Y++ G +
Sbjct: 252 SEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGGVI 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + + +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDSRIVH 371
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+IIK TYE A +++ + + E+ L++ A + + RL GAID +E + ++
Sbjct: 372 TIIKSDRRFTYEEAQKVIETGEGDYKEEILELNKLAQILRKQRLVAGAIDFDRVEVKFEI 431
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P +++Y ++ + A +L+ E M+L +A G N A PYR
Sbjct: 432 DETGKP---LSVYFKESKE-ANKLIEEFMLLANRTVAEKIGKVPKNKKAKVFPYRIHDLP 487
Query: 408 QPQSNIDVSAFAHLPEGPVRSSA-----------------------IVKIMRAAAIDFRK 444
P +++ F + +R+S +V+ + A+ +
Sbjct: 488 DPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQKAR 547
Query: 445 PVRHGV----LGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
H + L Y FTSPIRR+ D++ H + L G + E + +
Sbjct: 548 YSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRYLAG-GRTVQEAKYEELCDHSSE 606
Query: 501 QTRIARRLSNTSLRYWIIEFL 521
+IA S++Y +EF+
Sbjct: 607 MEQIAANAERASVKYKQVEFM 627
>gi|405761098|ref|YP_006701694.1| 3'-to-5' exoribonuclease RNase R [Streptococcus pneumoniae SPNA45]
gi|404277987|emb|CCM08558.1| 3'-to-5' exoribonuclease RNase R [Streptococcus pneumoniae SPNA45]
Length = 784
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|284802888|ref|YP_003414753.1| hypothetical protein LM5578_2645 [Listeria monocytogenes 08-5578]
gi|284996029|ref|YP_003417797.1| hypothetical protein LM5923_2594 [Listeria monocytogenes 08-5923]
gi|284058450|gb|ADB69391.1| hypothetical protein LM5578_2645 [Listeria monocytogenes 08-5578]
gi|284061496|gb|ADB72435.1| hypothetical protein LM5923_2594 [Listeria monocytogenes 08-5923]
Length = 793
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 179/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|379727055|ref|YP_005319240.1| 3'-to-5' exoribonuclease RNase R [Melissococcus plutonius DAT561]
gi|376317958|dbj|BAL61745.1| 3'-to-5' exoribonuclease RNase R [Melissococcus plutonius DAT561]
Length = 784
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 170/381 (44%), Gaps = 50/381 (13%)
Query: 172 SNFLQK--AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
+N+L E+ LLNRKDL ++ ID ++A +LDDA++ +L +G + +H+AD +
Sbjct: 245 ANYLSDNFTEEELLNRKDLRDQQIVTIDGEDAKDLDDAVTVKKLNNGNYYLGVHIADVSH 304
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y++ GS DK+A +RGTSV+L PM P++L+ + SL ++ + ++ G
Sbjct: 305 YVKEGSFIDKEAYERGTSVYLIDRVIPMIPQRLSNDICSLNPKVPRLTLSCEMEINHQGK 364
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEE-----EAELKILSEAAALRL---QWRLQ 341
+ + + S+I+ +TY + E+L + ++ + + E L L R Q
Sbjct: 365 VVHHEIFPSVIQTAERMTYTAVNEILEDQNTQTMRHYQSLVPMFKEMQELHLILSTMREQ 424
Query: 342 QGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL 401
+GA+ E+RI V +P+ I + R+V M++ E +A + +++L
Sbjct: 425 RGALSFDDHESRIIVNEAGEPQRI----ELRERGIGERIVESFMLIANETVAKH--YHDL 478
Query: 402 ALPY----RGQPQSNIDVSAFAHL-----------------------------PEGPVRS 428
LP+ QP+ F + PE V +
Sbjct: 479 KLPFIYRIHEQPKEEKMQRFFDFISILGILIKGSKSEITPKDLQSALKKVMGRPEEAVVN 538
Query: 429 SAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSA 488
+ +++ M+ A +G L Y FTSPIRRY DL+ H + + S
Sbjct: 539 TILLRSMQQARYSENNYGHYG-LAATYYTHFTSPIRRYPDLIVHRLIHTYNQDSSEKTKE 597
Query: 489 GQLEGMASIVNMQTRIARRLS 509
+ I N +++ RR +
Sbjct: 598 RWATQLPDIANHSSQMERRAT 618
>gi|386044751|ref|YP_005963556.1| ribonuclease R [Listeria monocytogenes 10403S]
gi|404411690|ref|YP_006697278.1| ribonuclease R [Listeria monocytogenes SLCC5850]
gi|345537985|gb|AEO07425.1| ribonuclease R [Listeria monocytogenes 10403S]
gi|404231516|emb|CBY52920.1| ribonuclease R [Listeria monocytogenes SLCC5850]
Length = 793
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMENLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + +++ L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAVV---IRERS-AGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|417850209|ref|ZP_12496123.1| ribonuclease R [Streptococcus mitis SK1080]
gi|339455052|gb|EGP67663.1| ribonuclease R [Streptococcus mitis SK1080]
Length = 784
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 160/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRGEITLTIDGADAKDLDDAVHIKDLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGHVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K ++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHEILENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|456014682|gb|EMF48284.1| 3-to-5 exoribonuclease RNase R [Planococcus halocryophilus Or1]
Length = 764
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 160/340 (47%), Gaps = 48/340 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L +R+DL + ++ ID +A +LDDA+ ++ DG K+ +H+AD + Y+ GS D++
Sbjct: 246 DLNDRRDLRNEQIVTIDGADAKDLDDAVQVVKYDDGTYKLGVHIADVSHYVTEGSAIDRE 305
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A R TS++L PM P +L+ SL ++ ++ + G + + + S+I
Sbjct: 306 AYDRATSIYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIFNDQGEVQSHDIFQSVI 365
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
+ +TY E+L + +E E +++ E A + R+++GAID E+
Sbjct: 366 NTSARMTYTDVYEILEQDNQELKEQYSELVPMFELMKELAEVLRTKRMRRGAIDFDFKES 425
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR---- 406
++ V P +++ + ++ A RL+ E M+ E +A F+ + +P YR
Sbjct: 426 KVLVDENGYP---VDVVIRERT-VAERLIEEFMLAANETVAE--QFHTMEVPAIYRIHED 479
Query: 407 GQPQ---------SNID------------------VSAFAHLPEGPVRSSAIVKIMRAAA 439
+P+ +N V + A PE PV S+ +++ M+ A
Sbjct: 480 PKPEKLQRFFEFVTNFGIVVKGSGTQIHPRALQEIVESIAGTPEEPVVSTMMLRSMQQAK 539
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 540 YS-AESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 578
>gi|444426565|ref|ZP_21221978.1| exoribonuclease II [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444240217|gb|ELU51763.1| exoribonuclease II [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 667
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 170/381 (44%), Gaps = 53/381 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I N+ K +D L R D+TH+ ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAQNDLPNSEPAGIENWELK-DDADLERVDMTHVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + + G ++ I +ADPT YI P DK A +RG +++LP PM P LA
Sbjct: 215 ALYAKKTESGDFELTIAIADPTAYITPEDDMDKVARERGYTIYLPGRNIPMLPRDLADNL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEEAE- 324
SL +GE+ A+ +V ++ DG I + + + IK L Y++ ++ L ++ +
Sbjct: 275 CSLIEGEIRPAICCTVTVNKDGVIGDDINFFAANIKSHARLAYDNVSDWLETGSSDKWQP 334
Query: 325 -------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
L+ L + + R +WR + + + R +++ D ++ ++ D A
Sbjct: 335 SEEIATILRDLYDFSRARAEWREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LCG-----EAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSS 429
RLV E MI +C E T G FN A G I+ PEG + +
Sbjct: 391 NRLVEESMITANICAGRTLREKFET-GVFNTHA----GFKAEKIEEVVELVNPEGALEFT 445
Query: 430 A--IVKIMRAAA------------IDFR------------KPVRHGVLGLPGYVQFTSPI 463
A I + AA +D R +P+ H +GL Y +TSPI
Sbjct: 446 AESIATLEGFAALRRWLGEQETSYLDNRIRKFQTYSEVGNQPLPHYAMGLDIYATWTSPI 505
Query: 464 RRYMDLLAHYQVKACLRGESP 484
R+Y D++ H +KA + + P
Sbjct: 506 RKYGDMINHRMLKAVILNKEP 526
>gi|336436808|ref|ZP_08616518.1| ribonuclease R [Lachnospiraceae bacterium 1_4_56FAA]
gi|336006627|gb|EGN36660.1| ribonuclease R [Lachnospiraceae bacterium 1_4_56FAA]
Length = 713
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 163/343 (47%), Gaps = 46/343 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL ++ ID ++A +LDDA+S + +++G K+ +H+AD T Y++ S
Sbjct: 237 SEADMAGRLDLRDWQMVTIDGEDAKDLDDAVS-LTMENGNYKLGVHIADVTNYVQEKSAL 295
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+KRGTSV+L PM P L+ SL GE A++ + + G + ++ +
Sbjct: 296 DREALKRGTSVYLVDRVIPMLPHTLSNGICSLNAGENRLALSCIMTVTPKGDVIDHQIAE 355
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
++I+ ++Y S ++L E E + + ++E + + + R Q+G+ID
Sbjct: 356 TVIRVDERMSYTSVAKILEQQDEAERDKYRTLVPMFEQMAELSHIIREHRKQRGSIDFDF 415
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
ET K+ E+ PI I Y + + A +++ + M+L E +A + L YR
Sbjct: 416 PET--KMVLDENGRPIDIKPY---ERNTATKMIEDFMLLANETVAEEYFWRELPFLYRTH 470
Query: 409 PQSNID--------VSAFA---HLPEGPVRSSAIVKIM-------RAAAIDF-------- 442
+ + ++ F H+ G VR + K++ A ID
Sbjct: 471 ETPDDEKIKKLSTLINNFGYHIHVGNG-VRPMEVQKLLGKAEGTPEEALIDRLALRSMKQ 529
Query: 443 --RKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRG 481
P G GL Y FTSPIRRY DL H +K LRG
Sbjct: 530 AKYSPENTGHFGLAAKYYTHFTSPIRRYPDLQIHRIIKDDLRG 572
>gi|15805061|ref|NP_293746.1| ribonuclease II family protein [Deinococcus radiodurans R1]
gi|6457676|gb|AAF09610.1|AE001865_7 ribonuclease II family protein [Deinococcus radiodurans R1]
Length = 461
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/392 (28%), Positives = 174/392 (44%), Gaps = 32/392 (8%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL +AID + + DDA+ L G ++++HVAD + P S D +A
Sbjct: 80 ERLDLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARA 139
Query: 244 RGTSVFLPTATYPMFPEKL-AMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
RG +++LP T M P++L A G+ L EV A+++ + L DG+ V + +K
Sbjct: 140 RGATLYLPDRTIGMLPDELVAKAGLGLH--EVSPALSICLDLDPDGNAEAVDVLLTRVK- 196
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
L Y+ A L E L L+ A+ + +GA+ E R+K
Sbjct: 197 VQRLAYQEAQARLEAGEEPFVTLARLARASRRLRE---GEGALSIDLPEVRVKADE---- 249
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
V P MR +V E M L G A + N + LP+ Q +V+ L
Sbjct: 250 ---TGASVFPLPKPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREVAGDT-L 305
Query: 422 PEGPVRSSAIVKIMRAAAIDFR-KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
P R + + F+ P H +GL Y Q TSP+RRY+DL+ H Q++A L
Sbjct: 306 PAMWARRKTLARTR------FQPSPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLA 359
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKD 540
G P S+ + + M R+ S R+ + F+ QP ER + A+++ +
Sbjct: 360 GRD-PLSSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQP-ERVWDAVVVDR-RG 416
Query: 541 RTAALLL------VEVGLQAAAWVSVGAQIGD 566
A LL+ V+V AA ++ Q D
Sbjct: 417 AQATLLIPDLAFDVQVNTPAAPGTALQVQFAD 448
>gi|418082898|ref|ZP_12720099.1| ribonuclease R [Streptococcus pneumoniae GA44288]
gi|419448612|ref|ZP_13988609.1| ribonuclease R [Streptococcus pneumoniae 4075-00]
gi|353756811|gb|EHD37410.1| ribonuclease R [Streptococcus pneumoniae GA44288]
gi|379623670|gb|EHZ88303.1| ribonuclease R [Streptococcus pneumoniae 4075-00]
Length = 765
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|307704704|ref|ZP_07641603.1| ribonuclease R [Streptococcus mitis SK597]
gi|307621751|gb|EFO00789.1| ribonuclease R [Streptococcus mitis SK597]
Length = 784
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYQKIVPSIQLMAKLHETLENMRMKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA-HL--PEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F H+ + A+ IMR + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLHIYGTASEISQEALQDIMRTVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|16804487|ref|NP_465972.1| hypothetical protein lmo2449 [Listeria monocytogenes EGD-e]
gi|386051420|ref|YP_005969411.1| ribonuclease R [Listeria monocytogenes FSL R2-561]
gi|404284941|ref|YP_006685838.1| ribonuclease R [Listeria monocytogenes SLCC2372]
gi|16411937|emb|CAD00527.1| lmo2449 [Listeria monocytogenes EGD-e]
gi|346425266|gb|AEO26791.1| ribonuclease R [Listeria monocytogenes FSL R2-561]
gi|404234443|emb|CBY55846.1| ribonuclease R [Listeria monocytogenes SLCC2372]
Length = 793
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 179/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|410726257|ref|ZP_11364497.1| ribonuclease R [Clostridium sp. Maddingley MBC34-26]
gi|410601021|gb|EKQ55543.1| ribonuclease R [Clostridium sp. Maddingley MBC34-26]
Length = 726
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 162/374 (43%), Gaps = 55/374 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL L++ ID ++A +LDDA+S +L +G K+ +H+AD T Y++ + DK+A+KR
Sbjct: 248 RRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNYKLGVHIADVTHYVKESNPLDKEALKR 307
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
TSV+L PM P KL+ SL + +T++ + D G + + + SIIK
Sbjct: 308 ATSVYLIDRVIPMLPRKLSNGICSLNPR--VDRLTLTCFMEIDRKGKVVNHEIVESIIKT 365
Query: 303 TYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+TY T++L + EE + K++ + + + R ++GAID E +I
Sbjct: 366 NERMTYTDVTKILKDHDEELIKKYDYLYEDFKMMEDLCNILREKRTKRGAIDFEIAEAKI 425
Query: 355 ---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
++ P + +P + A R++ E M+ E +A + +L YR
Sbjct: 426 ILNELGKPIEIKPY-------DREIANRIIEEFMLAANETVAEHMFGTHLPFVYR--IHE 476
Query: 412 NIDVSAFAHLPE----------------------------GPVRSSAIVKIMRAAAIDFR 443
N D A E G + + ++ + + R
Sbjct: 477 NPDEEKLAKFKEFIYNLGYAIQWTEDIHPKTLQDILEKVKGKNEETVVSTLLLRSMMQAR 536
Query: 444 -KPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNM 500
P G GL Y FTSPIRRY DL H +K L GE +L+ +
Sbjct: 537 YAPECSGHFGLAAQYYCHFTSPIRRYPDLQIHRIIKEHLHGEMDEKRINKLKNIVGYAAK 596
Query: 501 QTRIARRLSNTSLR 514
Q+ R + + R
Sbjct: 597 QSSEMERKAQDAER 610
>gi|418159644|ref|ZP_12796343.1| ribonuclease R [Streptococcus pneumoniae GA17227]
gi|353821377|gb|EHE01553.1| ribonuclease R [Streptococcus pneumoniae GA17227]
Length = 675
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 134 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 193
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 194 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 251
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 252 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 311
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 312 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 365
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 366 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 425
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 426 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 469
>gi|237821327|ref|ZP_04597172.1| ribonuclease R [Streptococcus pneumoniae CCRI 1974M2]
Length = 765
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|417316234|ref|ZP_12102886.1| ribonuclease R [Listeria monocytogenes J1816]
gi|328465314|gb|EGF36571.1| ribonuclease R [Listeria monocytogenes J1816]
Length = 793
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 365 KTTERMTYMDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|384423098|ref|YP_005632457.1| exoribonuclease II [Vibrio cholerae LMA3984-4]
gi|327485806|gb|AEA80212.1| Exoribonuclease II [Vibrio cholerae LMA3984-4]
Length = 679
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/417 (27%), Positives = 184/417 (44%), Gaps = 49/417 (11%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 117 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 176
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 177 EPAGIDDW-QLKDDADLVREDLTSLPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 235
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 236 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTISK 295
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQ 337
G I + + IK L Y+ ++ L E+ + ++ L + R
Sbjct: 296 HGVIGDDIRFFAAHIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARAN 355
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAIA 393
WR + + R +++ D ++ ++ D A RLV E MI +C G+ +
Sbjct: 356 WRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKTLQ 411
Query: 394 T---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGPVR 427
T +G FN A + G P ++ + V FA L E
Sbjct: 412 TTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYL 471
Query: 428 SSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 472 DNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 527
>gi|403387321|ref|ZP_10929378.1| ribonuclease R [Clostridium sp. JC122]
Length = 712
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 162/343 (47%), Gaps = 47/343 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL LK+ ID ++A +LDDA+S L++G K+ +H+AD + Y+ S D
Sbjct: 238 ENEYKRRKDLRDLKMVTIDGEDAKDLDDAVSVEVLRNGNFKLGVHIADVSHYVTEKSNLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
K+A+KRG SV+L PM P+KL+ SL + +T+S + +++G + ++ +
Sbjct: 298 KEALKRGNSVYLIDRVIPMLPKKLSNGVCSLNPK--VDRLTLSCFMEINNEGKVVDHEIC 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK +TY T++L N +E E K + + + R ++G+ID
Sbjct: 356 ESIIKTNERMTYTDVTKILRDNDKETIERYDYLYEDFKNMEKLYEILNSRRTRRGSIDFE 415
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E +I + E+ +PI I Y + + R++ E M++ E +A + + N YR
Sbjct: 416 FDEAKIIL--DENGKPIDIKPY---ERAVSNRIIEEFMLVANETVAEHMFWLNTPFVYRV 470
Query: 408 QPQSN----IDVSAFAHLPEGPVRSSAIVK-----------------------IMRAAAI 440
+ ++ + F + +R+++ V ++R+
Sbjct: 471 HEDPDEEKLMNFNEFVYNLGYFIRNTSEVHPRMLQDILEKVKGKKEEHVVSRLLLRSMMK 530
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRG 481
P G GL Y FTSPIRRY DL+ H +K L G
Sbjct: 531 AKYSPECLGHFGLAAKYYCHFTSPIRRYPDLIIHRIIKEYLNG 573
>gi|344202636|ref|YP_004787779.1| ribonuclease R [Muricauda ruestringensis DSM 13258]
gi|343954558|gb|AEM70357.1| ribonuclease R [Muricauda ruestringensis DSM 13258]
Length = 727
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/404 (23%), Positives = 174/404 (43%), Gaps = 54/404 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R+D+ + + ID +A + DDALS +L++G ++ IH+AD + Y++P S+ +
Sbjct: 252 ESEIAKRRDMRDVLTFTIDPKDAKDFDDALSFQKLENGNYEIGIHIADVSHYVQPDSILE 311
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A R TSV+L PM PE L+ + SLR E + + + + + +
Sbjct: 312 EEAYDRATSVYLVDRVVPMLPEVLSNKACSLRPNEEKYTFSAVFEMDDNAKLVKQWFGRT 371
Query: 299 IIKPTYMLTYESATELL---------HLNLEEEA---------ELKILSEAAALRLQWRL 340
I YE A ++ +++ E+A + A + Q R+
Sbjct: 372 AINSNERFAYEEAQHIIETEQNKIPKEISIREKAYSVSDDVVEAVLTFDRLAKIMRQARM 431
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
GAI +E + ++ +P + +Y ++ D A +L+ E M+L +A +
Sbjct: 432 DAGAISFDKIEVKFHLSENNEP---VGVYFKEAKD-ANKLIEEFMLLANRKVAEFIGKQK 487
Query: 401 LALPYRGQPQSNID--------VSAFAH---LPEGPVRSSAIVKIMR------------- 436
YR + + D +S F H L + + ++ K++
Sbjct: 488 KTFVYRVHDKPDEDKLMALNGVISRFGHSINLKDPKSINQSLNKLLEDVKGKKEQNLVDT 547
Query: 437 ------AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQ 490
+ AI + + H LG Y FTSPIRRY D++ H ++ L E P +
Sbjct: 548 LAIRSMSKAIYTTENIGHYGLGFEYYTHFTSPIRRYPDVMVHRLLQHYLDKEKIPKAVSF 607
Query: 491 LEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
E +M+ +A S++Y I+F+ K++++ +I
Sbjct: 608 EEKCKHSSDMEL-LAANAERDSIKYMQIKFMEDH-KDQEFLGVI 649
>gi|386054636|ref|YP_005972194.1| ribonuclease R [Listeria monocytogenes Finland 1998]
gi|346647287|gb|AEO39912.1| ribonuclease R [Listeria monocytogenes Finland 1998]
Length = 793
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 179/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|407707597|ref|YP_006831182.1| hypothetical protein MC28_4361 [Bacillus thuringiensis MC28]
gi|407385282|gb|AFU15783.1| Ribonuclease R [Bacillus thuringiensis MC28]
Length = 810
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|421217503|ref|ZP_15674404.1| ribonuclease R [Streptococcus pneumoniae 2070335]
gi|395584989|gb|EJG45381.1| ribonuclease R [Streptococcus pneumoniae 2070335]
Length = 656
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 134 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 193
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 194 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 251
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 252 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 311
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 312 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 365
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 366 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 425
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 426 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 465
>gi|229099553|ref|ZP_04230481.1| Ribonuclease R [Bacillus cereus Rock3-29]
gi|229118618|ref|ZP_04247970.1| Ribonuclease R [Bacillus cereus Rock1-3]
gi|423377078|ref|ZP_17354362.1| ribonuclease R [Bacillus cereus BAG1O-2]
gi|423440179|ref|ZP_17417085.1| ribonuclease R [Bacillus cereus BAG4X2-1]
gi|423449662|ref|ZP_17426541.1| ribonuclease R [Bacillus cereus BAG5O-1]
gi|423463252|ref|ZP_17440020.1| ribonuclease R [Bacillus cereus BAG6O-1]
gi|423532605|ref|ZP_17509023.1| ribonuclease R [Bacillus cereus HuB2-9]
gi|423542132|ref|ZP_17518522.1| ribonuclease R [Bacillus cereus HuB4-10]
gi|423548365|ref|ZP_17524723.1| ribonuclease R [Bacillus cereus HuB5-5]
gi|423621843|ref|ZP_17597621.1| ribonuclease R [Bacillus cereus VD148]
gi|228664810|gb|EEL20300.1| Ribonuclease R [Bacillus cereus Rock1-3]
gi|228683849|gb|EEL37799.1| Ribonuclease R [Bacillus cereus Rock3-29]
gi|401127943|gb|EJQ35650.1| ribonuclease R [Bacillus cereus BAG5O-1]
gi|401169469|gb|EJQ76715.1| ribonuclease R [Bacillus cereus HuB4-10]
gi|401176039|gb|EJQ83237.1| ribonuclease R [Bacillus cereus HuB5-5]
gi|401262872|gb|EJR69009.1| ribonuclease R [Bacillus cereus VD148]
gi|401639680|gb|EJS57417.1| ribonuclease R [Bacillus cereus BAG1O-2]
gi|402419950|gb|EJV52222.1| ribonuclease R [Bacillus cereus BAG4X2-1]
gi|402422123|gb|EJV54365.1| ribonuclease R [Bacillus cereus BAG6O-1]
gi|402464859|gb|EJV96547.1| ribonuclease R [Bacillus cereus HuB2-9]
Length = 810
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 161/341 (47%), Gaps = 50/341 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+ A D + + H L Y FTSPIRRY D + H ++
Sbjct: 538 KQARYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIR 577
>gi|423619179|ref|ZP_17595012.1| ribonuclease R [Bacillus cereus VD115]
gi|401251892|gb|EJR58162.1| ribonuclease R [Bacillus cereus VD115]
Length = 810
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 161/341 (47%), Gaps = 50/341 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+ A D + + H L Y FTSPIRRY D + H ++
Sbjct: 538 KQARYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIR 577
>gi|381184403|ref|ZP_09893021.1| ribonuclease R [Listeriaceae bacterium TTU M1-001]
gi|380315704|gb|EIA19205.1| ribonuclease R [Listeriaceae bacterium TTU M1-001]
Length = 815
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 165/374 (44%), Gaps = 56/374 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + +R+DL + ID +A +LDDA++ +L++G K+ +H+AD T Y++ GS DK
Sbjct: 270 DEIGSRRDLRDQVIITIDGADAKDLDDAITVTKLENGHFKLGVHIADVTHYVKEGSELDK 329
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A R TSV+L PM P +L+ SL ++ + + G + + + SI
Sbjct: 330 EASSRATSVYLVDRVIPMLPHRLSNGICSLNPKVDRFTMSCEMEIDETGHVVSHEIFESI 389
Query: 300 IKPTYMLTYESATELLHLNLEEEAELK--------ILSEAAALR---LQWRLQQGAIDTA 348
IK T +TY +L +E +AEL+ +L + L + R +GAID
Sbjct: 390 IKTTERMTYTDVNAIL---VENDAELRKKYAHIIPMLEDMFDLSKHLHEKREARGAIDFD 446
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E R+ V PE + V RL+ E M+ E +A + + ++ YR
Sbjct: 447 AKEARVLVDEKGRPEQV----VLRSRSAGERLIEEFMLAANETVAEHFHWMDVPFIYRIH 502
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
D ++ F + PE V S+ +++ M+
Sbjct: 503 EDPKEDKLARFFEFITNFGLVVKGTSNQVHPAALQQVLDEVKGKPEEMVISTVMLRSMQQ 562
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL-RGE-SPPFSAGQLEG 493
A D V G GL Y FTSPIRRY DL+ H ++ L +G+ S A + E
Sbjct: 563 AKYD---TVSAGHFGLATDFYTHFTSPIRRYPDLMVHRLIREYLIKGDVSEETLAKRAEE 619
Query: 494 MASIVNMQTRIARR 507
+ I +++ RR
Sbjct: 620 LPDIAEHSSKMERR 633
>gi|422423157|ref|ZP_16500110.1| ribonuclease R, partial [Listeria seeligeri FSL S4-171]
gi|313636432|gb|EFS02190.1| ribonuclease R [Listeria seeligeri FSL S4-171]
Length = 631
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/436 (26%), Positives = 182/436 (41%), Gaps = 66/436 (15%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 83 DIGNRRDLRDQMIITIDGADAKDLDDAVTVSQLPNGNWKLGVHIADVTHYVTEGSPLDIE 142
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + DG + + + SII
Sbjct: 143 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQDGHVVNHEIFESII 202
Query: 301 KPTYMLTYESATELLHLNLEEEAELK------------ILSEAAALRLQWRLQQGAIDTA 348
K T +TY ++L +E++ L+ + + A LR + R ++GAID
Sbjct: 203 KTTERMTYTDVNDIL---VEKDEALREKYASIVPMLEAMQNLAETLRAK-REKRGAIDFD 258
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 259 FKEARVVVDEEGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIH 314
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
D ++ F + PE V S+ +++ M+
Sbjct: 315 EDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQ 374
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQ 490
A D V G GL Y FTSPIRRY DL+ H Y + +R E+ A +
Sbjct: 375 AKYD---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEE 431
Query: 491 LEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEV 550
L +A + R A + EF+ + ER + I T L +E+
Sbjct: 432 LPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIEL 486
Query: 551 GLQAAAWVSVGAQIGD 566
V V A GD
Sbjct: 487 PTTIEGLVHVSAMKGD 502
>gi|227514413|ref|ZP_03944462.1| exoribonuclease R [Lactobacillus fermentum ATCC 14931]
gi|227087279|gb|EEI22591.1| exoribonuclease R [Lactobacillus fermentum ATCC 14931]
Length = 797
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 44/331 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT + ID E+ +LDDA+ A +L +G + +H+AD + Y++PG+ D++A KR
Sbjct: 253 RPDLTDQPLVTIDSIESKDLDDAVVAWKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKR 312
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P +L+ SL GE A++ + + G+I + + S+I+
Sbjct: 313 GTSVYLTDRVIPMLPRRLSNGICSLNPGEERLAMSCEMEIDPQGNIVSHEIFPSVIRSHA 372
Query: 305 MLTYESATELLHLNLE----EEAELKILSEAAA----LRLQWRLQQGAIDTATLETRIKV 356
+TY+S +L + E E EL + E A + L+ R Q+GAID E +I V
Sbjct: 373 RMTYKSVNAILEAHDEKTRQEYKELVPMFETMADLHRILLKHRHQRGAIDFEAPEAKIIV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
P ++ + D+ + R++ M+ E +A + ++ YR + + +
Sbjct: 433 DENGHP---TDIQLRDRG-LSERMIESFMLAANETVAKHYDLMHVPFLYRIHEHPDTERI 488
Query: 416 SAFAHL------------------------------PEGPVRSSAIVKIMRAAAIDFRKP 445
FA PE + + +++ M+ A
Sbjct: 489 KNFAEFLSVFGINMPGDLANVEPKMLQKVLKQVAGTPEEQMVQTMMLRSMQQAKYS-EDE 547
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+ H LG Y FTSPIRRY D H +K
Sbjct: 548 LSHFGLGAQYYTHFTSPIRRYPDTTVHRLIK 578
>gi|153955985|ref|YP_001396750.1| ribonuclease R [Clostridium kluyveri DSM 555]
gi|219856326|ref|YP_002473448.1| hypothetical protein CKR_2983 [Clostridium kluyveri NBRC 12016]
gi|146348843|gb|EDK35379.1| Rnr [Clostridium kluyveri DSM 555]
gi|219570050|dbj|BAH08034.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 709
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 155/341 (45%), Gaps = 54/341 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL ++ ID ++A +LDDA+S +L DG + +H+AD + Y++ + DK+A+KR
Sbjct: 244 RMDLRNILTVTIDGEDAKDLDDAVSLEKLPDGSYYLGVHIADVSYYVKEKNPLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS--IAEYSVDNSIIKP 302
GTSV+L PM P+KL+ SL + +T+S + DG+ + E+++ S+I+
Sbjct: 304 GTSVYLIDRVIPMLPKKLSNGICSLNPN--IDRLTLSCFMKIDGNGKVIEHNIVESVIRS 361
Query: 303 TYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRI- 354
+TY T++L + E + K++ E + + R+ +GAID E +I
Sbjct: 362 NERMTYTDVTKILKGDTETIEKYGNLVDTFKLMEELCRILNKKRMMRGAIDFDFEECKIT 421
Query: 355 --KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ P EP + + R++ E M++C E IA + + LP+ + N
Sbjct: 422 LNELGVPIKIEPY-------ERGISNRIIEEFMLVCNETIAEHMFWT--TLPFVFRVHEN 472
Query: 413 IDVSAFAHLPE----------------------------GPVRSSAIVKIMRAAAIDFR- 443
D H E G + + +M + R
Sbjct: 473 PDEEKLMHFNEFIHNLGYVVRWGKDVHPKTLQDIIDKVKGKKEETVVSTLMLRSMKQARY 532
Query: 444 KPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGE 482
P G GL Y FTSPIRRY DL+ H +K + G+
Sbjct: 533 SPECIGHFGLAAKYYCHFTSPIRRYPDLIIHRIIKEFINGQ 573
>gi|254367317|ref|ZP_04983343.1| ribonuclease R [Francisella tularensis subsp. holarctica 257]
gi|134253133|gb|EBA52227.1| ribonuclease R [Francisella tularensis subsp. holarctica 257]
Length = 750
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 151/347 (43%), Gaps = 45/347 (12%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERS 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV 446
P+R + D AH G V A+ +++ R D R
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMT 543
Query: 447 --------------RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
H L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|409099069|ref|ZP_11219093.1| ribonuclease R [Pedobacter agri PB92]
Length = 710
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 156/342 (45%), Gaps = 48/342 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + RKD ++ + ID +A + DDA+S +L +G ++ +H+AD + Y+ G+ DK
Sbjct: 250 DEIAKRKDFRNVLTFTIDPADAKDFDDAISYQKLPNGNHEIGVHIADVSHYVIQGTDLDK 309
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGE--VCNAVTVSVVLHSDGSIAEYSVDN 297
+A R TSV+L PM PE+L+ SLR E +C A L +I
Sbjct: 310 EAYSRATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFE--LDEQANIQSEWYGR 367
Query: 298 SIIKPTYMLTYESATELLHLNLEEE--AELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
++I +YE A E++ N E + E+ L+E A + + + GAI + E + K
Sbjct: 368 TVIHSDRRFSYEEAQEVIE-NKEGDYATEILKLNELAYILRDRKFKNGAISFESTEVKFK 426
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA---------------------- 393
+ P I +YV+++ D A +L+ + M+L +A
Sbjct: 427 LDESGKP---IGVYVKERKD-AHKLIEDYMLLANRKVAEFVAKKQKGEKKLTFVYRVHDS 482
Query: 394 ----TYGSFNNLA--LPYRGQPQSNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAA 439
T +F A Y+ +S+ +++ + HL E + +S ++ M A A
Sbjct: 483 PNMETLNTFATFASRFGYKINTKSDKEIAKSLNHLMADVEGKKEQNILTSLAIRSM-AKA 541
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
I K H L Y FTSPIRRY D++AH ++ L G
Sbjct: 542 IYSTKKTSHYGLAFEYYTHFTSPIRRYPDVMAHRLLQTYLDG 583
>gi|385812011|ref|YP_005848402.1| exoribonuclease R [Lactobacillus fermentum CECT 5716]
gi|299782910|gb|ADJ40908.1| Exoribonuclease R [Lactobacillus fermentum CECT 5716]
Length = 797
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 44/331 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT + ID E+ +LDDA+ A +L +G + +H+AD + Y++PG+ D++A KR
Sbjct: 253 RPDLTDQPLVTIDSIESKDLDDAVVAWKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKR 312
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P +L+ SL GE A++ + + G+I + + S+I+
Sbjct: 313 GTSVYLTDRVIPMLPRRLSNGICSLNPGEERLAMSCEMEIDPQGNIVSHEIFPSVIRSHA 372
Query: 305 MLTYESATELLHLNLE----EEAELKILSEAAA----LRLQWRLQQGAIDTATLETRIKV 356
+TY+S +L + E E EL + E A + L+ R Q+GAID E +I V
Sbjct: 373 RMTYKSVNAILEAHDEKTRQEYKELVPMFETMADLHRILLKHRHQRGAIDFEAPEAKIIV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
P ++ + D+ + R++ M+ E +A + ++ YR + + +
Sbjct: 433 DENGHP---TDIQLRDRG-LSERMIESFMLAANETVAKHYDLMHVPFLYRIHEHPDTERI 488
Query: 416 SAFAHL------------------------------PEGPVRSSAIVKIMRAAAIDFRKP 445
FA PE + + +++ M+ A
Sbjct: 489 KNFAEFLSVFGINMPGDLANVEPKMLQKVLKQVAGTPEEQMVQTMMLRSMQQAKYS-EDE 547
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+ H LG Y FTSPIRRY D H +K
Sbjct: 548 LSHFGLGAQYYTHFTSPIRRYPDTTVHRLIK 578
>gi|408790249|ref|ZP_11201878.1| 3'-to-5' exoribonuclease RNase R [Lactobacillus florum 2F]
gi|408520471|gb|EKK20517.1| 3'-to-5' exoribonuclease RNase R [Lactobacillus florum 2F]
Length = 767
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 44/332 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + NR+D+T ++ ID +E+ +LDDA++A +L +G + +H+AD + Y++ GSL D+
Sbjct: 251 EEMKNREDITDQQLVTIDAEESKDLDDAVTAWKLSNGNYHLGVHIADVSHYVKQGSLLDR 310
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KRGTSV+L PM P +L+ SL +GE+ ++ + ++ G + + S+
Sbjct: 311 EAYKRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCEMEINPQGKVIRSRIHPSV 370
Query: 300 IKPTYMLTYESATELLHLN---LEEEAE-----LKILSEAAALRLQWRLQQGAIDTATLE 351
++ T +TY + +L + ++ E + E + + R ++GAID E
Sbjct: 371 MRSTKRMTYNAVNAILETKDAAVRKQYEDLVPMFDAMGELHRILYRSRRRRGAIDFNDDE 430
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------------------ 393
+I V P I++ + ++ A RLV M+ E +A
Sbjct: 431 AKIIVDQNGHP---IDIQLRNRG-VAERLVESFMLAANETVAETYHKAKVPFIYRIHENP 486
Query: 394 ------------TYGSFNNLALPYRGQPQSNIDV-SAFAHLPEGPVRSSAIVKIMRAAAI 440
T N A P QP++ +V + A PE + S +++ M+ A
Sbjct: 487 DATRVKSFFEFLTAFGINVKADPDHLQPKTLQNVLTKVAGTPEESMVSVMLLRSMQQAKY 546
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K V H LG Y FTSPIRRY D+ H
Sbjct: 547 -ADKCVGHFGLGAQYYTHFTSPIRRYPDMFIH 577
>gi|357238220|ref|ZP_09125557.1| ribonuclease R [Streptococcus ictaluri 707-05]
gi|356752943|gb|EHI70064.1| ribonuclease R [Streptococcus ictaluri 707-05]
Length = 773
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 156/340 (45%), Gaps = 55/340 (16%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y++ GS D++
Sbjct: 248 DLIGRVDLRQETTFTIDGADAKDLDDAIHIKRLDNGHFELGVHIADVSYYVKEGSALDRE 307
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS--IAEYSVDNS 298
A+ RGTSV++ PM PE+L+ SL + +T S ++ DG + Y + S
Sbjct: 308 AVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDGKGHVVAYQICQS 365
Query: 299 IIKPTYMLTYESATELLHLNLEEEA---------ELKILSEAAALRLQWRLQQGAIDTAT 349
+IK + +TY + ++ + +EEA +++++ + + RL++GA++ T
Sbjct: 366 VIKTRFRMTYSAVNDM--IAGDEEALESYAPILESVQLMTALHKILEKMRLRRGALNFET 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--- 406
E +I V + P I V Q A R++ M+ E +A + + L YR
Sbjct: 424 QEAKIIVNDKGMPVDI----VLRQRGIAERMIESFMLAANECVAEHFAKAKLPFIYRIHE 479
Query: 407 ----GQPQSNIDVSA------------------------FAHLPEGPVRSSAIVKIMRAA 438
+ Q ID ++ A P V S +++ M+ A
Sbjct: 480 EPKAEKVQKFIDYASIFGIKIQGTANKVSQEALQEVMAKIADQPGSEVLSMMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 540 RYSEHN---HGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 576
>gi|255028115|ref|ZP_05300066.1| hypothetical protein LmonL_00549 [Listeria monocytogenes LO28]
Length = 741
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 179/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|228910937|ref|ZP_04074746.1| Ribonuclease R [Bacillus thuringiensis IBL 200]
gi|228848888|gb|EEM93733.1| Ribonuclease R [Bacillus thuringiensis IBL 200]
Length = 812
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 161/344 (46%), Gaps = 50/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L NR+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKNRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A D + H L Y FTSPIRRY D + H ++ +
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|407457802|ref|YP_006736107.1| RNB domain-containing protein [Chlamydia psittaci WS/RT/E30]
gi|405785494|gb|AFS24240.1| RNB domain protein [Chlamydia psittaci WS/RT/E30]
Length = 567
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 165/383 (43%), Gaps = 53/383 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G + +Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLFDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H + + E
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEE- 531
Query: 485 PFSAGQLEGMASIVNMQTRIARR 507
+LE + + Q RIA +
Sbjct: 532 ----TRLEHIVRACSTQERIAAK 550
>gi|330846369|ref|XP_003295008.1| hypothetical protein DICPUDRAFT_160116 [Dictyostelium purpureum]
gi|325074403|gb|EGC28468.1| hypothetical protein DICPUDRAFT_160116 [Dictyostelium purpureum]
Length = 909
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/429 (25%), Positives = 193/429 (44%), Gaps = 51/429 (11%)
Query: 192 KVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLP 251
K Y ID ++DDA+ ++ ++G V +H++D T ++P S + A + +S++LP
Sbjct: 499 KSYTIDSITTKDVDDAVGIIKEENGDYIVVVHISDVTDSVKPFSQLYEWAKYQSSSIYLP 558
Query: 252 TATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESA 311
+T+ M P ++ + SL + ++ ++ G I +YS+ S++K Y+
Sbjct: 559 NSTHFMLPNFISDQS-SLEPNKENRCLSYQFRVNEKGQITDYSIFPSLVKNIVKTNYDKV 617
Query: 312 TEL-------------LHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
T +H N EE EL L + A+ +L+ + + L V N
Sbjct: 618 TNSINSFNGINSGSSDIHSN-EETEELNQLFKIAS-KLKKNRELKGVSIVNLPKSKVVYN 675
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
E + L ED + LVSE+MI + + NNL +P+RGQ + + + +
Sbjct: 676 EEAKK--YELAEEDSGTLSHTLVSELMIATNWISSDFCIKNNLPIPFRGQSEPDFNAN-L 732
Query: 419 AHLPE-GPVRSSA-IVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
HL + P+ S +++ + +D + H LGL Y TSPIRR+ D+L H Q+K
Sbjct: 733 EHLSKLHPIAGSHLLLRQFKKGVLD-HNNIGHYSLGLNSYTWSTSPIRRFSDMLVHTQIK 791
Query: 477 ACLRGESPPFSAGQLE--------GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKER 528
L + P + LE + SI + Q + + + N L+ Q +
Sbjct: 792 NYLLEKQPLLNTEYLERTLPYVQKNLESIKDFQRKYEKEILN--------RILKMQGFNK 843
Query: 529 QYRALILR---FIKDRTAALLLVEVGLQAAAWVSVGAQIGD---EVEVKVE--EAHPRDD 580
YRA+ L F LL++ GL +S+ Q+ + E++ K+ EA P
Sbjct: 844 LYRAVKLSKTTFGNKSVVKFLLLDHGL-----LSITLQVDNYQGELDDKIYLLEAKPNHR 898
Query: 581 IIYLKEVVR 589
I+ E+V+
Sbjct: 899 NIFRFEIVK 907
>gi|297621275|ref|YP_003709412.1| ribonuclease R [Waddlia chondrophila WSU 86-1044]
gi|297376576|gb|ADI38406.1| ribonuclease R [Waddlia chondrophila WSU 86-1044]
Length = 709
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 160/360 (44%), Gaps = 43/360 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+ L +R+D +++ ID A + DDALS + + G + +H+AD + Y++ S +
Sbjct: 253 QSELKDRQDFRSWEIFTIDPTTAKDFDDALSLSKDKTGNYHLGVHIADVSHYVKSDSALE 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
K A R S + P PM P L+ SL+ N +T SV++ S+GS+ Y +
Sbjct: 313 KQARMRCNSTYFPGVCIPMLPPSLSENLCSLKPN--VNRLTASVLMTFDSNGSLLNYRIV 370
Query: 297 NSIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+IK TY A E+L + LK++ E L + R ++G+++ + E R+
Sbjct: 371 KGVIKSKKRFTYREAKEVLDGRKKSPFAPTLKLMEELCLLLKKKRYERGSLEFSIPELRV 430
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
V E+ P ++ D +LV E M+ E +AT+ S L L YR + + +
Sbjct: 431 IVD--ENGTPTGTEFI--PYDITHQLVEEFMLKANEVVATHLSKEGLDLTYRVHEEPSEE 486
Query: 415 --------VSAFA-HLPEGPVRSS-----------------AIVKIMRAA-AIDFRKPVR 447
+AF HL E P AI I R AI +
Sbjct: 487 RMNEFVSLANAFGFHLKEAPSPGDLQKFFDEALQTPYGTYLAISYIRRMKLAIYSPANIG 546
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
H L L Y FTSPIRRY+DL+ H + P S ++E +A + + RI+ +
Sbjct: 547 HYGLALTHYCHFTSPIRRYVDLVIHRLLF------EKPISYSEIEAVAKECSEKERISEK 600
>gi|158320013|ref|YP_001512520.1| ribonuclease R [Alkaliphilus oremlandii OhILAs]
gi|158140212|gb|ABW18524.1| ribonuclease R [Alkaliphilus oremlandii OhILAs]
Length = 705
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 167/371 (45%), Gaps = 46/371 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL +++ ID +A +LDDA+S +L +G K+ +H+AD T Y+ G+ DK+A++
Sbjct: 244 HRVDLRSIQMVTIDGADAKDLDDAVSIEQLSNGNYKLGVHIADVTHYVREGTPLDKEALE 303
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIK 301
RGTSV+L PM P KL+ SL + +T+SV + D G + + + +I
Sbjct: 304 RGTSVYLVDRVIPMLPRKLSNGICSLNPK--VDRLTLSVFMEIDHRGRVVNHEIVEGLIN 361
Query: 302 PTYMLTYESATELLHLNLEEEAE-----LKILSEAAALRL---QWRLQQGAIDTATLETR 353
+ YE +++L + E+ E L++ L L + R +GAID E +
Sbjct: 362 INERMVYEDVSDILEKDDEKLKEKYADFLEMFKNMEKLSLILRKHRENRGAIDFDFPEAK 421
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
+ + + P + + A R++ E M++C E +A Y + N+ YR ++
Sbjct: 422 VILDDKGKPIDVKKY----ERRIANRIIEEFMLVCNETVAEYFYWQNVPFVYRVHEDPSL 477
Query: 414 D--------VSAFAHLPEG---------------PVRSSAIVKIMRAAAIDFRKPVRH-- 448
+ + F + +G + + +++ + K R+
Sbjct: 478 EKLEEFNKFIHNFGYHLKGLNTEIHPKSLQELLKKLEGTKEERLINTLMLRSLKKARYAG 537
Query: 449 ---GVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTR 503
G GL Y FTSPIRRY DL H +K L G+ +L I+ Q+
Sbjct: 538 HNLGHFGLAAQYYCHFTSPIRRYPDLEIHRIIKESLHGKLVGKRLEELNAKVPIIADQSS 597
Query: 504 IARRLSNTSLR 514
R+++ + R
Sbjct: 598 TRERVADEAER 608
>gi|404414467|ref|YP_006700054.1| ribonuclease R [Listeria monocytogenes SLCC7179]
gi|404240166|emb|CBY61567.1| ribonuclease R [Listeria monocytogenes SLCC7179]
Length = 793
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + +++ L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAVV---IRERS-AGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|390949301|ref|YP_006413060.1| exoribonuclease R [Thiocystis violascens DSM 198]
gi|390425870|gb|AFL72935.1| exoribonuclease R [Thiocystis violascens DSM 198]
Length = 620
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 181/395 (45%), Gaps = 47/395 (11%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL YAID + + DDALS DG ++++HVAD I+P S +++A
Sbjct: 243 DRIDLTHLSAYAIDDEGNQDPDDALSL----DGE-RLWVHVADVAALIDPDSDLEREARA 297
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP M P + + + L V A++ G I V S ++
Sbjct: 298 RGANLYLPERIVNMLPSAVT-DRLGLGLQPVSPALSFGFRCGDAGEIEAIEVCRSWVR-V 355
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE--- 360
L+Y+ L+ A L+ ++ R R QGA E ++V + +
Sbjct: 356 ERLSYDVVE--TQLDTAPFAALRTIANRFRDR---RSAQGATSLELPEVSVRVVDGQVVI 410
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP--QSNIDVSAF 418
P P + + +V + M++ GEA A + + +P+ QP ++ + +
Sbjct: 411 RPLPRLK---------SRAMVMDAMLMAGEAAARFCLDQGIPIPFATQPPPENGDEATDL 461
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKAC 478
A + A + + + +P H LGLP Y + TSP+RRY DLL H Q++A
Sbjct: 462 AAM-------YARRRCFKPTRLSV-EPESHAGLGLPLYTRATSPLRRYSDLLVHQQIRAW 513
Query: 479 LRGESPPFSAGQLE--GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536
L G P + +E G A ++ R RLSN ++W + FLR P + ++ R
Sbjct: 514 LGGREPRSAQRIMECSGEADTASIAIRRGERLSN---QHWKLLFLRDNPNWKGEGIVVGR 570
Query: 537 FIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVK 571
+DR LLL E+ ++A ++ DEVE+
Sbjct: 571 --EDRKVILLLPELAMEAR------VRVRDEVELN 597
>gi|421307248|ref|ZP_15757892.1| ribonuclease R [Streptococcus pneumoniae GA60132]
gi|395907855|gb|EJH18740.1| ribonuclease R [Streptococcus pneumoniae GA60132]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 157/337 (46%), Gaps = 49/337 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS DK+A+ R
Sbjct: 250 RLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSALDKEALNR 309
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
TSV++ PM PE+L+ SL + +T S ++ D G + Y++ ++IK
Sbjct: 310 ATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTITQTVIKT 367
Query: 303 TYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
++ +TY ++L + E+ E ++++++ R+++GA++ T E +I
Sbjct: 368 SFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFDTNEAKIL 427
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQP-- 409
V P I V Q A R++ M++ E +A + F+ L LP+ +P
Sbjct: 428 VDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYRIHEEPKA 481
Query: 410 ---QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV---------------- 446
Q ID S+F + + A+ IMRA + V
Sbjct: 482 EKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYSE 541
Query: 447 -RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 542 HNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|422420010|ref|ZP_16496965.1| ribonuclease R [Listeria seeligeri FSL N1-067]
gi|313632054|gb|EFR99154.1| ribonuclease R [Listeria seeligeri FSL N1-067]
Length = 793
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/436 (26%), Positives = 182/436 (41%), Gaps = 66/436 (15%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVSQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + DG + + + SII
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQDGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAELK------------ILSEAAALRLQWRLQQGAIDTA 348
K T +TY ++L +E++ L+ + + A LR + R ++GAID
Sbjct: 365 KTTERMTYTDVNDIL---VEKDEALREKYASIVPMLEAMQNLAETLRAK-REKRGAIDFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 421 FKEARVVVDEEGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIH 476
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
D ++ F + PE V S+ +++ M+
Sbjct: 477 EDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQ 536
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQ 490
A D V G GL Y FTSPIRRY DL+ H Y + +R E+ A +
Sbjct: 537 AKYD---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEE 593
Query: 491 LEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEV 550
L +A + R A + EF+ + ER + I T L +E+
Sbjct: 594 LPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIEL 648
Query: 551 GLQAAAWVSVGAQIGD 566
V V A GD
Sbjct: 649 PTTIEGLVHVSAMKGD 664
>gi|254505679|ref|ZP_05117825.1| exoribonuclease II [Vibrio parahaemolyticus 16]
gi|219551332|gb|EED28311.1| exoribonuclease II [Vibrio parahaemolyticus 16]
Length = 589
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 188/429 (43%), Gaps = 55/429 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP-DGKKNWMVY---DQNGASCSIKPQQVTFVVPGVEKF 166
+KG+ + K+ D V+ + + P G + V A I P VT +
Sbjct: 38 RKGIKSDDLKEGDWVVAQLVRHPLKGDNGFFVEITEKITDADDKIAPWWVTLAQNDLPNS 97
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I N+ + +D L R D+TH+ ID + ++DDAL A + + G ++ I +AD
Sbjct: 98 EPAGIDNW-EIIDDEDLERLDMTHIPFVTIDGESTKDMDDALYAKKTEAGDFELTIAIAD 156
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P S DK A +RG +++LP PM P LA E SL + + A+ V +
Sbjct: 157 PTAYITPDSEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIENQQRPALCCRVTVSK 216
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQ 337
+G I + + + IK L Y+ ++ + E + ++ L E + R
Sbjct: 217 EGVIGDDIAFFAANIKSHARLVYDHVSDWIENGASEAWQPSDEIAQVVRDLYEFSLARAD 276
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG----E 390
WR + + + R +++ D ++ ++ D A RLV E MI +C +
Sbjct: 277 WREKNAVVFPERPDYRFELSEDND---VVAIHA-DMRRSANRLVEEAMITANICAGKTLQ 332
Query: 391 AIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG--PVRSSAIVKIMRAAA--------- 439
A G FN A +P+ DV + P+G P + ++ + AA
Sbjct: 333 ATFDSGVFNTHA---GFKPEKIEDVVKLVN-PDGELPFTAESVATLEGFAALRRWLAEQE 388
Query: 440 ---IDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+D R KP+ H +GL Y +TSPIR+Y D++ H +KA + G+ P
Sbjct: 389 TSYLDNRIRKSQAYSEIGNKPLPHYAMGLELYATWTSPIRKYGDMINHRMLKAHILGKEP 448
Query: 485 PFSAGQLEG 493
+A + G
Sbjct: 449 VQTADETVG 457
>gi|335357554|ref|ZP_08549424.1| ribonuclease R [Lactobacillus animalis KCTC 3501]
Length = 795
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 48/331 (14%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R+DLT ++ ID E+ +LDDA+S +L +G + +H+AD + Y+ P + D++A
Sbjct: 259 VGRRDLTDEQMVTIDSIESKDLDDAVSVRKLDNGNYHLGVHIADVSHYVTPNTPLDREAF 318
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSV+L PM P KL+ SL A+T + + G + + + S+IK
Sbjct: 319 ERGTSVYLTDRVIPMIPAKLSNGICSLNPQVERLALTCEMEIDPQGEVVSHEIFPSVIKT 378
Query: 303 TYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRI 354
T +TY++ ++L + ++E E + + E + L+ R ++GAI+ E +I
Sbjct: 379 TERMTYKAINKILESDDQKEKERYRELVPMFEEMGELHKILLKMRKRRGAIEFEDTEAKI 438
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQPQ 410
V ++ I++ + ++ + R+V M+ E +A + + +L +P+ P+
Sbjct: 439 IV---DEKGHAIDIQLRERG-ISERMVESFMLAANETVAAH--YKDLHVPFIYRIHETPK 492
Query: 411 SNIDVSAFAHL-----------------------------PEGPVRSSAIVKIMRAAAID 441
S F L PE P+ S +++ M+ A
Sbjct: 493 EEKIKSFFEMLSGLGVEVTGKVSDIQPKMLQKILKKVAGKPEEPMVSVMLLRSMQQAKYS 552
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P+ H L Y FTSPIRRY DL+ H
Sbjct: 553 -PEPLGHFGLAAKDYTHFTSPIRRYPDLMVH 582
>gi|419493110|ref|ZP_14032837.1| ribonuclease R [Streptococcus pneumoniae GA47210]
gi|421227139|ref|ZP_15683847.1| ribonuclease R [Streptococcus pneumoniae 2072047]
gi|379595148|gb|EHZ59957.1| ribonuclease R [Streptococcus pneumoniae GA47210]
gi|395595966|gb|EJG56190.1| ribonuclease R [Streptococcus pneumoniae 2072047]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 IQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|419481998|ref|ZP_14021791.1| ribonuclease R [Streptococcus pneumoniae GA40563]
gi|379580872|gb|EHZ45761.1| ribonuclease R [Streptococcus pneumoniae GA40563]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 IQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|229105728|ref|ZP_04236357.1| Ribonuclease R [Bacillus cereus Rock3-28]
gi|228677617|gb|EEL31865.1| Ribonuclease R [Bacillus cereus Rock3-28]
Length = 812
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|417698387|ref|ZP_12347560.1| ribonuclease R [Streptococcus pneumoniae GA41317]
gi|419452995|ref|ZP_13992968.1| ribonuclease R [Streptococcus pneumoniae EU-NP03]
gi|419505907|ref|ZP_14045568.1| ribonuclease R [Streptococcus pneumoniae GA49194]
gi|332202828|gb|EGJ16897.1| ribonuclease R [Streptococcus pneumoniae GA41317]
gi|379607821|gb|EHZ72567.1| ribonuclease R [Streptococcus pneumoniae GA49194]
gi|379626704|gb|EHZ91320.1| ribonuclease R [Streptococcus pneumoniae EU-NP03]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|78186405|ref|YP_374448.1| 3'-5' exoribonuclease, VacB and RNase II [Chlorobium luteolum DSM
273]
gi|78166307|gb|ABB23405.1| RNAse R [Chlorobium luteolum DSM 273]
Length = 762
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 173/397 (43%), Gaps = 57/397 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+ +L R D+ ++ ID +A + DDALS L++G K+ +H+AD + Y+ S
Sbjct: 286 TDKDLQERLDVRDKVLFTIDPVDAKDFDDALSVEPLENGLWKIGVHIADVSHYVTEDSPL 345
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A+KR TSV+L PM P +L+ + SL G A +V + DG + ++
Sbjct: 346 DKEALKRATSVYLVDRVIPMLPSRLSEDICSLNPGVDRMAFSVFFTMTEDGKVQKHEFHK 405
Query: 298 SIIKPTYMLTYESATELLHLNLEEE-AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE E+L+ + EL++L + + L + R + G +D T E R K+
Sbjct: 406 TVIHSKRRFTYEDVQEILNNKKGDYLMELQLLEKISVLLREERFRHGGLDFETEEVRFKL 465
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALP--YR--G 407
+P ++ + + + RL+ E M+L +A T+ + P YR
Sbjct: 466 GKKGEPLEVM----KKERLGSHRLIEEFMLLANRKVAEFLTKTFKEGKKVPQPVIYRVHD 521
Query: 408 QPQSN--IDVSAFAHL----------PEGPVRSSA---------------------IVKI 434
PQ I ++ F +GP+ S+ +++
Sbjct: 522 SPQQERVIILANFVKKIGYDLKINKGKDGPIVSAKSLRELLQKVHGTNVEFLVNELVLRC 581
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAG 489
M A +G LG Y FTSPIRRY DL+ H Y+ R + P
Sbjct: 582 MSKAVYTGENDGHYG-LGFEHYTHFTSPIRRYPDLIVHRLLFEYEAFRKKRRKMPEARIA 640
Query: 490 QL----EGMASIVNMQTRIARRLSNTSLRYWIIEFLR 522
+L + + I N + ++A S++ +E+++
Sbjct: 641 ELKQKIDTVCRISNEREKVAVEAERESIKLKQVEYMQ 677
>gi|357013914|ref|ZP_09078913.1| Rnr, partial [Paenibacillus elgii B69]
Length = 764
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 162/362 (44%), Gaps = 52/362 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L R+DL ++ ID ++A +LDDA++ RL +G + +H+AD + Y+ GS
Sbjct: 239 SEEDLKGRRDLRGKRIVTIDGEDAKDLDDAVNVERLPNGNYVLGVHIADVSYYVREGSTL 298
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A RG SV+L PM P +L+ SL ++ + ++D ++ + +
Sbjct: 299 DNEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCEMEFNADANVVRHDIFT 358
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA----------ELKILSEAAALRLQWRLQQGAIDT 347
S+IK + +TY + +LL E + +++ E A R+++GAID
Sbjct: 359 SVIKTSERMTYTNVRKLLTEESPEPELLEKYAYLLDDFRLMKELAMKLRSKRMRRGAIDF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E++I V P I+ D+ M ++ E M+ E +A + F+ L +P+
Sbjct: 419 DFQESKILVDADGKPTDIVK---RDRTIAEM-IIEEFMLAANETVAEH--FHWLKVPFLY 472
Query: 408 QPQSNIDVSAFAHL---------------------------------PEGPVRSSAIVKI 434
+ + D H E V S+ +++
Sbjct: 473 RIHEDPDAEKLQHFMEFITNFGYVVRGKGNSVHPRALQTLLEEIKGTKEETVISTVMLRS 532
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGM 494
M+ A D + + H L Y FTSPIRRY DL+ H ++ L ES FS + E +
Sbjct: 533 MKQAKYD-SQSLGHYGLAAEFYSHFTSPIRRYPDLIIHRVIREVL--ESGTFSEARNEYL 589
Query: 495 AS 496
AS
Sbjct: 590 AS 591
>gi|422810474|ref|ZP_16858885.1| Exoribonuclease R, vacB [Listeria monocytogenes FSL J1-208]
gi|378751364|gb|EHY61954.1| Exoribonuclease R, vacB [Listeria monocytogenes FSL J1-208]
Length = 793
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 179/432 (41%), Gaps = 58/432 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQIIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH-----YQVKACLRGESPPFSAGQLEGM 494
V G GL Y FTSPIRRY DL+ H Y + +R E+ A +L +
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEI 597
Query: 495 ASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQA 554
A + R A + EF+ + ER + I T L +E+
Sbjct: 598 AEHSSKMERRAVEAERETDELKKTEFMVDKVGER-----FIGIISSVTNFGLFIELPTTI 652
Query: 555 AAWVSVGAQIGD 566
V V A GD
Sbjct: 653 EGLVHVSAMKGD 664
>gi|322387713|ref|ZP_08061322.1| ribonuclease R [Streptococcus infantis ATCC 700779]
gi|419843875|ref|ZP_14367180.1| ribonuclease R [Streptococcus infantis ATCC 700779]
gi|321141580|gb|EFX37076.1| ribonuclease R [Streptococcus infantis ATCC 700779]
gi|385702299|gb|EIG39444.1| ribonuclease R [Streptococcus infantis ATCC 700779]
Length = 780
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 55/348 (15%)
Query: 177 KAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSL 236
++E +L R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 242 RSEKDLEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSA 301
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYS 294
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y+
Sbjct: 302 LDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKNGRVRNYT 359
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDT 347
+ ++IK ++ +TY ++L + E+ + K + + L + R+++GA++
Sbjct: 360 ITQTVIKTSFRMTYSDVNDILAGDEEKRQDYKKIVPSIELMAKLHETLESMRIKRGALNF 419
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 420 DTNEAKILVDKKGKPVDIVLRH----RGVAERMIESFMLIANETVAEH--FSKLDLPFIY 473
Query: 406 --RGQP-----QSNID------------------------VSAFAHLPEGPVRSSAIVKI 434
+P Q ID +SA P V S +++
Sbjct: 474 RIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMSAVEGEPYADVLSMMLLRS 533
Query: 435 MRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
M+ A HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 534 MQQARY---SEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|184154846|ref|YP_001843186.1| ribonuclease R [Lactobacillus fermentum IFO 3956]
gi|183226190|dbj|BAG26706.1| ribonuclease R [Lactobacillus fermentum IFO 3956]
Length = 797
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 150/331 (45%), Gaps = 44/331 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT + ID E+ +LDDA+ A +L +G + +H+AD + Y++PG+ D++A KR
Sbjct: 253 RPDLTDQPLVTIDSIESKDLDDAVVAWKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKR 312
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P +L+ SL GE A++ + + G+I + + S+I+
Sbjct: 313 GTSVYLTDRVIPMLPRRLSNGICSLNPGEERLAMSCEMEIDPQGNIVSHEIFPSVIRSHA 372
Query: 305 MLTYESATELLHLNLE----EEAELKILSEAAA----LRLQWRLQQGAIDTATLETRIKV 356
+TY+ ++L + E E EL + E A + L+ R Q+GAID E +I V
Sbjct: 373 RMTYKGVNDILEAHDEKTRQEYKELVPMFETMADLHRILLKHRHQRGAIDFEAPEAKIIV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
P ++ + D+ + R++ M+ E +A + ++ YR + + +
Sbjct: 433 DENGHP---TDIQLRDRG-LSERMIESFMLAANETVAKHYDLMHVPFLYRIHEHPDTERI 488
Query: 416 SAFAHL------------------------------PEGPVRSSAIVKIMRAAAIDFRKP 445
FA PE + + +++ M+ A
Sbjct: 489 KNFAEFLSVFGINMPGDLANVEPKMLQKVLKQVAGTPEEQMVQTMMLRSMQQAKYS-EDE 547
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK 476
+ H LG Y FTSPIRRY D H +K
Sbjct: 548 LSHFGLGAQYYTHFTSPIRRYPDTTVHRLIK 578
>gi|147671789|ref|YP_001215270.1| exoribonuclease II [Vibrio cholerae O395]
gi|227120003|ref|YP_002821898.1| exoribonuclease II [Vibrio cholerae O395]
gi|262169081|ref|ZP_06036774.1| exoribonuclease II [Vibrio cholerae RC27]
gi|172047360|sp|A5F0G1.1|RNB_VIBC3 RecName: Full=Exoribonuclease 2; AltName: Full=Exoribonuclease II;
Short=RNase II; Short=Ribonuclease II
gi|146314172|gb|ABQ18712.1| exoribonuclease II [Vibrio cholerae O395]
gi|227015453|gb|ACP11662.1| exoribonuclease II [Vibrio cholerae O395]
gi|262022362|gb|EEY41070.1| exoribonuclease II [Vibrio cholerae RC27]
Length = 678
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 115/419 (27%), Positives = 185/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
W + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWCETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>gi|421240531|ref|ZP_15697078.1| ribonuclease R [Streptococcus pneumoniae 2080913]
gi|395609113|gb|EJG69203.1| ribonuclease R [Streptococcus pneumoniae 2080913]
Length = 784
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 IQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|241693025|ref|XP_002412965.1| salivary protein Is3, putative [Ixodes scapularis]
gi|215506779|gb|EEC16273.1| salivary protein Is3, putative [Ixodes scapularis]
Length = 956
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 113/421 (26%), Positives = 182/421 (43%), Gaps = 56/421 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DL HL + ++D ++DDAL L +G +V +H+AD + ++ PG+ DK+A
Sbjct: 461 NREDLRHLCICSVDPPGCTDIDDALHCRELPNGNYEVGVHIADVSYFVRPGTALDKEAAN 520
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+L M PE L+ SLR GE A + + + + SIIK
Sbjct: 521 RGTTVYLVDQRIDMVPELLSANLCSLRGGEERLAFSAIWEVSPEAEVLHTKFHKSIIKSR 580
Query: 304 YMLTYESATELL---HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
LTY A + LN E L+ L+ A + R+ GA+ A+ E R V + E
Sbjct: 581 AALTYAEAQARIDDTSLNDELTLGLRGLNRLAKILKAKRIANGALTLASSEVRFHV-DSE 639
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNNLAL--------PYRGQPQ 410
+PI Q +V E M+L ++A + F AL P +P
Sbjct: 640 THDPID--VQTKQLLETNSMVEEFMLLANASVARHIFQEFPECALLRRHPAPAPANLEPL 697
Query: 411 SN--------IDVSAFAHL---------PEGP-----VRSSAIVKIMRA--------AAI 440
++V + L PE P +R A + RA A
Sbjct: 698 VKAGHSKGFVVEVESGLRLAESLDRAVDPEQPYFNVMLRMVATRCMARALYFCSGCVAPE 757
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES--PPF-SAGQLEGMASI 497
DF H L +P Y FTSPIRRY DL+ H + C+ E+ P + + + +
Sbjct: 758 DF----DHYGLAMPFYTHFTSPIRRYSDLMVHRLLGVCVGAEATYPDLVHKNKCQELCNN 813
Query: 498 VNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAW 557
+N + +A+ +S+ + F R + + + L F+++ +L+ GL+A +
Sbjct: 814 LNYRHNMAQYAGRSSVALYTQAFFRDKVLDEEGYVL---FVRENALQVLMPRFGLEATLF 870
Query: 558 V 558
+
Sbjct: 871 L 871
>gi|149019567|ref|ZP_01834886.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP23-BS72]
gi|418102693|ref|ZP_12739769.1| ribonuclease R [Streptococcus pneumoniae NP070]
gi|419475367|ref|ZP_14015207.1| ribonuclease R [Streptococcus pneumoniae GA14688]
gi|419486523|ref|ZP_14026289.1| ribonuclease R [Streptococcus pneumoniae GA44128]
gi|421206426|ref|ZP_15663487.1| ribonuclease R [Streptococcus pneumoniae 2090008]
gi|421208795|ref|ZP_15665817.1| ribonuclease R [Streptococcus pneumoniae 2070005]
gi|421229620|ref|ZP_15686292.1| ribonuclease R [Streptococcus pneumoniae 2061376]
gi|421291847|ref|ZP_15742585.1| ribonuclease R [Streptococcus pneumoniae GA56348]
gi|147930942|gb|EDK81922.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP23-BS72]
gi|353776859|gb|EHD57334.1| ribonuclease R [Streptococcus pneumoniae NP070]
gi|379560912|gb|EHZ25933.1| ribonuclease R [Streptococcus pneumoniae GA14688]
gi|379588138|gb|EHZ52984.1| ribonuclease R [Streptococcus pneumoniae GA44128]
gi|395575751|gb|EJG36316.1| ribonuclease R [Streptococcus pneumoniae 2070005]
gi|395576340|gb|EJG36896.1| ribonuclease R [Streptococcus pneumoniae 2090008]
gi|395596281|gb|EJG56501.1| ribonuclease R [Streptococcus pneumoniae 2061376]
gi|395894064|gb|EJH05045.1| ribonuclease R [Streptococcus pneumoniae GA56348]
Length = 784
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 IQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|148984718|ref|ZP_01817986.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP3-BS71]
gi|387757361|ref|YP_006064340.1| putative exoribonuclease R [Streptococcus pneumoniae OXC141]
gi|418232043|ref|ZP_12858630.1| ribonuclease R [Streptococcus pneumoniae GA07228]
gi|418236482|ref|ZP_12863050.1| ribonuclease R [Streptococcus pneumoniae GA19690]
gi|419479801|ref|ZP_14019608.1| ribonuclease R [Streptococcus pneumoniae GA19101]
gi|419499491|ref|ZP_14039190.1| ribonuclease R [Streptococcus pneumoniae GA47597]
gi|147923109|gb|EDK74224.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP3-BS71]
gi|301799950|emb|CBW32533.1| putative exoribonuclease R [Streptococcus pneumoniae OXC141]
gi|353886770|gb|EHE66550.1| ribonuclease R [Streptococcus pneumoniae GA07228]
gi|353892714|gb|EHE72462.1| ribonuclease R [Streptococcus pneumoniae GA19690]
gi|379570967|gb|EHZ35926.1| ribonuclease R [Streptococcus pneumoniae GA19101]
gi|379602545|gb|EHZ67316.1| ribonuclease R [Streptococcus pneumoniae GA47597]
gi|429317786|emb|CCP37588.1| putative exoribonuclease R [Streptococcus pneumoniae SPN034156]
gi|429319330|emb|CCP32585.1| putative exoribonuclease R [Streptococcus pneumoniae SPN034183]
gi|429321146|emb|CCP34559.1| putative exoribonuclease R [Streptococcus pneumoniae SPN994039]
gi|429322966|emb|CCP30600.1| putative exoribonuclease R [Streptococcus pneumoniae SPN994038]
Length = 784
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|365758894|gb|EHN00716.1| Dss1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 919
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 174/395 (44%), Gaps = 38/395 (9%)
Query: 166 FDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRL-QDGRIKVYIHV 224
+D +I + +K DN R D LKV+ ID + A E+DD +S DG ++IH+
Sbjct: 503 YDLTNIEDLQRKNSDNSSERYDFGDLKVFCIDSETAHEIDDGVSIENHGTDGLYTLHIHI 562
Query: 225 ADP-------TKYIEPGSLSD--KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGE-- 273
ADP T Y G ++D A++R + +LP PM P+ + +QG+
Sbjct: 563 ADPASMFPESTNYDSEGIITDILNVALERSFTTYLPDVVVPMLPKSICNLSDLGKQGQRT 622
Query: 274 --VCNAVTVSVVLHSDGSIAE-----YSVDNSIIKPTYMLTYESATELLHLNLEE----E 322
+ +V V V+ DG E + + I+ +TY+ +L+ +E +
Sbjct: 623 KTISFSVDVKVMSKGDGESLEIMFDSFKIRKGIVSNFPKVTYDDVDRILNTPNDEASPVK 682
Query: 323 AELKILSEAAALRLQWRLQQ--GAIDTATLETRIKVANPEDPEPIINLYVEDQADP-AMR 379
+L+ LS + L R+++ I + N + + + DQ + +
Sbjct: 683 KDLESLSMVSNLLRDRRIKKNNAVIFGEGFNKGLVTLNANEEGELTEISFSDQVETLSAV 742
Query: 380 LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSA--------- 430
LVSEMMIL Y + N + +R Q +D+ A + + S+
Sbjct: 743 LVSEMMILANTLTGKYFADNKICGVFRCYKQLPLDIIAQEQY-DSMITSTKKGLFPQLKD 801
Query: 431 IVKIMRAAAIDFR--KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSA 488
IVK+ F +P RH ++G Y+ TSP+RR+ DL+ H Q+ L+ + FS
Sbjct: 802 IVKLSSLLNSSFYTGRPFRHEMIGAKQYLTVTSPLRRFPDLINHLQIHRHLQKKPLCFSQ 861
Query: 489 GQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRR 523
Q++ + + + I +R S YW + +L++
Sbjct: 862 VQIDRLIWPIQSRADILKRAGRNSSTYWTLNYLKK 896
>gi|365903524|ref|ZP_09441347.1| ribonuclease R [Lactobacillus malefermentans KCTC 3548]
Length = 781
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 162/336 (48%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R+D+T K+ ID + + +LDDA++A +L +G + +H+AD + Y++ GSL
Sbjct: 249 TEEEMAGREDITDQKLVTIDGESSKDLDDAVTAWKLPNGNFHLGVHIADVSHYVKEGSLL 308
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A KRGTSV+L PM P +L+ SL +G + ++ + + +G++ ++ +
Sbjct: 309 DQEAFKRGTSVYLTDRVIPMLPRRLSNGICSLNEGVLRLCMSCEMEIDQEGNVIKHRIHP 368
Query: 298 SIIKPTYMLTYESATELLHLN----LEEEAELKILSEAAA----LRLQWRLQQGAIDTAT 349
S++K T +TY + ++L + +E AEL + E + + R ++GAID
Sbjct: 369 SVMKSTARMTYTAVNQILEAHDDKTRDEYAELVPMFETMGALHKILYKHRKRRGAIDFDD 428
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YRG 407
E I + + + I L V A+ R++ M+ E +A +++ P YR
Sbjct: 429 REAEI-IVDEKGHAVDIKLRVRGLAE---RMIESFMLAANETVAQ--NYDQAKAPFIYRV 482
Query: 408 QPQSNID--------VSAF--------AHL---------------PEGPVRSSAIVKIMR 436
+ D ++AF AHL PE V S +++ ++
Sbjct: 483 HETPDADRIKSFFEFLTAFGVNVKGDPAHLRPKTMQGILKQVAGKPEEAVVSVMMLRSLK 542
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + + H LG Y FTSPIRRY D + H
Sbjct: 543 QARYT-DQSLGHFGLGADFYTHFTSPIRRYPDTMVH 577
>gi|408357188|ref|YP_006845719.1| ribonuclease R [Amphibacillus xylanus NBRC 15112]
gi|407727959|dbj|BAM47957.1| ribonuclease R [Amphibacillus xylanus NBRC 15112]
Length = 755
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 158/340 (46%), Gaps = 50/340 (14%)
Query: 182 LLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
L NR+DL ++ ID +A +LDDA+S +L +G ++ ++++D + Y++ S DK+A
Sbjct: 246 LENRRDLRDKQIVTIDGADAKDLDDAISVEKLSNGNYRLGVYISDVSYYVDKDSPMDKEA 305
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
RGTSV+L PM P +L+ SL GE + + + +G + + + S+I
Sbjct: 306 YSRGTSVYLVDRVIPMLPHRLSNGICSLNPGEDRLTLGCEMEIDHNGHVVSHDIFQSVIN 365
Query: 302 PTYMLTYESATELLHLNLEEEAELK-----------ILSEAAALRLQWRLQQGAIDTATL 350
+ +TY+ ++L ++++ EL+ + + A + + R +GAID
Sbjct: 366 SSARMTYKEVNQIL---VDQDEELRQQYVEFVPLFEAMEDLAEILRKKRFGRGAIDFNFK 422
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---- 406
E ++ V + P I++ + +++ A RL+ E M++ E +A + + L YR
Sbjct: 423 EAQVIVDDTGHP---IDVVIRERS-VAERLIEEFMLIANETVAEHFHWMELPFIYRIHED 478
Query: 407 -------------GQPQSNIDVSAFAHLP--------------EGPVRSSAIVKIMRAAA 439
GQ + +A P E V S +++ ++ A
Sbjct: 479 PDEEKLKNFYQFLGQFGYQVKGTANEVHPQALQQVLDLVKGEQEEMVISKLLLRSLKQAK 538
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
DF + H L Y FT+PIRRY DL+ H ++ L
Sbjct: 539 YDF-NSIGHFGLATKFYTHFTAPIRRYPDLIVHRLIRTYL 577
>gi|254373389|ref|ZP_04988877.1| ribonuclease R [Francisella tularensis subsp. novicida GA99-3549]
gi|254374852|ref|ZP_04990333.1| ribonuclease R [Francisella novicida GA99-3548]
gi|151571115|gb|EDN36769.1| ribonuclease R [Francisella novicida GA99-3549]
gi|151572571|gb|EDN38225.1| ribonuclease R [Francisella novicida GA99-3548]
Length = 765
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 152/351 (43%), Gaps = 48/351 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D A+ G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
M A G L Y FTSPIRRY DL+ H +K+ + GE
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVHRIIKSII-GE 592
>gi|212640318|ref|YP_002316838.1| Exoribonuclease R [Anoxybacillus flavithermus WK1]
gi|212561798|gb|ACJ34853.1| Exoribonuclease R [Anoxybacillus flavithermus WK1]
Length = 758
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 44/341 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E+ + R+DL + + ID ++A +LDDA++ +L +G K+ +H+AD + Y+ GS
Sbjct: 236 SEEEIKGRRDLRNEMIVTIDGEDAKDLDDAVTVTKLANGNYKLGVHIADVSHYVTEGSPI 295
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 296 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINDRGEVVSHEIFQ 355
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I+ +TY +L E E ++++E A + R+++GAID
Sbjct: 356 SVIRTVERMTYSDVNRILVDRDEALREKYAPLVPMFELMAELADILRNKRMKRGAIDFDF 415
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P + V + A RL+ E M+ E IA + + N+ YR
Sbjct: 416 KEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETIAEHFHWMNVPFIYRVHE 471
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 472 DPKPEKLQRFLEFITNFGYIVKGTGNQIHPRALQEVLEAVRGEPEEMVVSTVMLRSMKQA 531
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D +G L Y FTSPIRRY DL+ H ++ L
Sbjct: 532 RYDAESLGHYG-LSTEFYTHFTSPIRRYPDLIVHRLIRTYL 571
>gi|374340833|ref|YP_005097569.1| ribonuclease R [Marinitoga piezophila KA3]
gi|372102367|gb|AEX86271.1| ribonuclease R [Marinitoga piezophila KA3]
Length = 734
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 161/359 (44%), Gaps = 59/359 (16%)
Query: 171 ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
I N +Q + +L RKD ++ ID D A + DDA+ +L +G + +H+AD + Y
Sbjct: 229 IPNTVQ--DKDLKGRKDFRDEIIFTIDGDTAKDFDDAVQIKKLDNGNYLLGVHIADVSHY 286
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--G 288
++ S DK+A KRGTSV+L PM P +L+ SL + E + +T+S+++ D G
Sbjct: 287 VKENSNLDKEAFKRGTSVYLIDTVIPMLPHELSDWICSLVENE--DRLTMSLLMEIDENG 344
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE---------LKILSEAAALRLQWR 339
+ +++V N +I+ LTY +LL +EE E L+++ E + + R
Sbjct: 345 DVVDFNVYNGVIRSKKRLTYSKVNKLLSNEADEELEKEIGWLRPQLEMMKELMEIIRENR 404
Query: 340 LQQGAI-DTATLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
++GAI D E + + N +D P+ + + ++ E MI E IA+
Sbjct: 405 RRRGAILDIEGGEVKFIFDENGNVKDIIPV-------ERGISEVIIEEFMIKANETIASI 457
Query: 396 GSFNNLALPYRGQPQSNIDV---------------------------SAFAHLPEGPVRS 428
L YR + + D+ HL + P++
Sbjct: 458 FDSQGLPFIYRIHEEPDPDMLLQLKNYLEIIGLRYRFPKNIHPKLLQDLLEHLKDHPLKK 517
Query: 429 SA----IVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
S + + RA D V H L Y FTSPIRRY DL+ H +K L+G+
Sbjct: 518 SIQKLLVRSLKRAVYSDLN--VGHFGLASENYTHFTSPIRRYPDLIVHRLLKKYLKGKG 574
>gi|392955544|ref|ZP_10321075.1| ribonuclease R [Bacillus macauensis ZFHKF-1]
gi|391878471|gb|EIT87060.1| ribonuclease R [Bacillus macauensis ZFHKF-1]
Length = 778
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 162/355 (45%), Gaps = 55/355 (15%)
Query: 164 EKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
E+ D KDI R+DL + ID ++A +LDDA++ +L++G K+ +H
Sbjct: 234 EEIDPKDIEG-----------RRDLRQETIVTIDGEDAKDLDDAVNVTKLENGNYKLGVH 282
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
+AD + Y+ GS D++A++RGTSV+L PM P +L+ SL ++ +
Sbjct: 283 IADVSHYVTEGSPIDEEALERGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEME 342
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
+ G + + + S+I+ +TY + ++L EE + K++ E A +
Sbjct: 343 ITPKGEVIRHDIFPSVIRTVERMTYTNVRKILQDEDEEVNKRYESLIPFFKLMGELAEIL 402
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
+ R +GAID E ++ V +P + + + +++ A +L+ E M+ E +A +
Sbjct: 403 RKRRFNRGAIDFDFSEAKVIVNESSEP---LEIALRERS-VAEKLIEEFMLCANETVAQH 458
Query: 396 GSFNNLALPYRGQPQSNID--------VSAFAHL-----------------------PEG 424
+L YR + + + +S F ++ PE
Sbjct: 459 FHQADLPFMYRIHEEPDAEKLARFVEFISMFGYVLKDGVTEVHPATLQKLLEEVKGEPEE 518
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
V S +++ M+ A F + + H L Y FTSPIRRY DL+ H ++ L
Sbjct: 519 MVISKIMLRSMKQAKY-FPESLGHYGLATEFYTHFTSPIRRYPDLIVHRLIRTYL 572
>gi|421224841|ref|ZP_15681585.1| ribonuclease R [Streptococcus pneumoniae 2070768]
gi|395590629|gb|EJG50933.1| ribonuclease R [Streptococcus pneumoniae 2070768]
Length = 675
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 134 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 193
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 194 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 251
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 252 IQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 311
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 312 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 365
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 366 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 425
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 426 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 469
>gi|337293501|emb|CCB91490.1| Ribonuclease R [Waddlia chondrophila 2032/99]
Length = 674
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 160/360 (44%), Gaps = 43/360 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+ L +R+D +++ ID A + DDALS + + G + +H+AD + Y++ S +
Sbjct: 218 QSELKDRQDFRSWEIFTIDPTTAKDFDDALSLSKDKTGNYHLGVHIADVSHYVKSDSALE 277
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
K A R S + P PM P L+ SL+ N +T SV++ S+GS+ Y +
Sbjct: 278 KQARMRCNSTYFPGVCIPMLPPSLSENLCSLKPN--VNRLTASVLMTFDSNGSLLNYRIV 335
Query: 297 NSIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+IK TY A E+L + LK++ E L + R ++G+++ + E R+
Sbjct: 336 KGVIKSKKRFTYREAKEVLDGRKKSPFAPTLKLMEELCLLLKKKRYERGSLEFSIPELRV 395
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
V E+ P ++ D +LV E M+ E +AT+ S L L YR + + +
Sbjct: 396 IVD--ENGTPTGTEFI--PYDITHQLVEEFMLKANEVVATHLSKEGLDLTYRVHEEPSEE 451
Query: 415 --------VSAFA-HLPEGPVRSS-----------------AIVKIMRAA-AIDFRKPVR 447
+AF HL E P AI I R AI +
Sbjct: 452 RMNEFVSLANAFGFHLKEAPSPGDLQKFFDEALQTPYGTYLAISYIRRMKLAIYSPANIG 511
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARR 507
H L L Y FTSPIRRY+DL+ H + P S ++E +A + + RI+ +
Sbjct: 512 HYGLALTHYCHFTSPIRRYVDLVIHRLLF------EKPISYSEIEAVAKECSEKERISEK 565
>gi|421277246|ref|ZP_15728066.1| ribonuclease R [Streptococcus mitis SPAR10]
gi|395876527|gb|EJG87603.1| ribonuclease R [Streptococcus mitis SPAR10]
Length = 780
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 55/347 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDLEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKNGRVRNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + K + + L + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQDYKKIVPSIELMAKLHETLESMRIKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDIVLRH----RGVAERMIESFMLIANETVAEH--FSKLELPFIYR 474
Query: 406 -RGQP-----QSNID------------------------VSAFAHLPEGPVRSSAIVKIM 435
+P Q ID +SA P V S +++ M
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMSAVEGEPYADVLSMMLLRSM 534
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
+ A HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARY---SDHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|163754550|ref|ZP_02161672.1| putative exoribonuclease [Kordia algicida OT-1]
gi|161325491|gb|EDP96818.1| putative exoribonuclease [Kordia algicida OT-1]
Length = 731
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 171/417 (41%), Gaps = 62/417 (14%)
Query: 163 VEKFDHK-DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVY 221
VEKF +K D+S +Q D + R+D+ + + ID +A + DDALS L++G ++
Sbjct: 237 VEKFANKIDLS--IQA--DEIKKRRDMRDVLTFTIDPKDAKDFDDALSFQTLENGNYEIG 292
Query: 222 IHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVS 281
IH+AD + Y++PG++ D++A R TSV+L PM PE L+ SLR E +
Sbjct: 293 IHIADVSHYVKPGTVLDEEAYNRATSVYLVDRVVPMLPEILSNGACSLRPNEEKYTFSAV 352
Query: 282 VVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE-------------------E 322
++ + ++ YE A ++ E E
Sbjct: 353 FEINKKAEVLNQWFGRTVTYSDKRFAYEEAQVIIETKGNEIPADISLTGKAYKVDQAIVE 412
Query: 323 AELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVS 382
A LK L E A + R+Q GAI +E R + +PE + Y + Q D A +L+
Sbjct: 413 ATLK-LDELAKIMRAKRMQHGAISFDKVEVRFNLDENNNPEGV---YFKTQKD-ANKLIE 467
Query: 383 EMMILCGEAIATYGSFN--NLALPYRGQPQSNID--------VSAFAHLPEGPVRSSAIV 432
E M+L +A Y YR + +ID +S F + R S
Sbjct: 468 EFMLLANRKVAAYIGKQEPKKTFVYRIHDEPDIDKLANLQTIISRFGYSLNLKSRKSTTS 527
Query: 433 KIMRAAA----------ID------------FRKPVRHGVLGLPGYVQFTSPIRRYMDLL 470
+ + A +D + H L Y FTSPIRRY D++
Sbjct: 528 SLNQLLADVKGKGEQNMVDTLAIRSMSKAKYTTDNIGHYGLAFDYYSHFTSPIRRYPDVM 587
Query: 471 AHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKE 527
H ++ L G E NM++ +A S++Y I+F++ E
Sbjct: 588 VHRLLQHYLDGGKSANEDEYEEKCEHSSNMES-LAANAERDSIKYMQIKFMQDHKDE 643
>gi|288554069|ref|YP_003426004.1| ribonuclease R [Bacillus pseudofirmus OF4]
gi|288545229|gb|ADC49112.1| ribonuclease R [Bacillus pseudofirmus OF4]
Length = 791
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 151/342 (44%), Gaps = 52/342 (15%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ R+DL + ID +A +LDDA+ +L +G + +H+AD + Y+ GS DK+
Sbjct: 243 DIEGRRDLRDEVIVTIDGADAKDLDDAVHVKQLSNGNFLLGVHIADVSHYVTEGSPIDKE 302
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A R TSV+L PM P +L+ SL ++ + + DG + + + S+I
Sbjct: 303 AADRATSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEITPDGQVVNHEIFQSVI 362
Query: 301 KPTYMLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L N EE + + + AA+ R ++GAID E
Sbjct: 363 KTTERMTYSDVNKILVDNDEEVKARYESLVPNFEAMEKLAAILRNKRFERGAIDFDFKEA 422
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ V D E N V A RL+ E M+ E IA + F+ L LP+ + +
Sbjct: 423 KVLV----DEEGKANDVVLRSRSVAERLIEEFMLAANETIAEH--FHWLKLPFVYRIHED 476
Query: 413 ID----------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
D ++ F ++ PE V S+ +++ M+ A
Sbjct: 477 PDAEKLTKFLEFITNFGYVVRGNANTVHPRALQKLLEEVRGEPEETVISTVMLRSMQQAK 536
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DLL H ++ L
Sbjct: 537 YD---PNSLGHFGLSTEFYTHFTSPIRRYPDLLVHRLIRTYL 575
>gi|169334034|ref|ZP_02861227.1| hypothetical protein ANASTE_00427 [Anaerofustis stercorihominis DSM
17244]
gi|169258751|gb|EDS72717.1| ribonuclease R [Anaerofustis stercorihominis DSM 17244]
Length = 704
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 182/416 (43%), Gaps = 62/416 (14%)
Query: 116 LEFKKDSDRVLLAVAQRPDGKKNWMVY--------DQNGASCSIKPQQVTFVVPGVEKFD 167
+++ K+ D+V++ + P KKNW+ D+NG I+ + VP +F
Sbjct: 172 IKYAKNKDKVVVEITDFPKDKKNWVGKITKVLGRKDENGVD--IEALIYEYDVP--YEFS 227
Query: 168 H---KDISNFLQKAEDNLLN-RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
H K+ + D RKDLT + ++ ID A +LDDA+S ++ ++ + + +H
Sbjct: 228 HLALKEADELEFDSFDKFKGKRKDLTDVNIFTIDGPTAKDLDDAVSIVKKENEYV-LSVH 286
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
+AD + Y++ S DKDA +RGTS++ PM P+ L SL E A +V +
Sbjct: 287 IADVSNYVKRNSEIDKDAYERGTSIYFADRVIPMLPKTLCENLCSLNPKEEKKAFSVDMR 346
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLH--LNLEE-----EAELKILSEAAALRL 336
++ +G + +Y+ SIIK Y+ EL +L E E +L + E L
Sbjct: 347 INKEGKLLDYNFYKSIIKSKAKFVYDEVNELFDGSKDLREEYYTYEEDLNTMKELYELLR 406
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG------- 389
Q R +G +D E I V N + ++ + ++ A R++ + M++
Sbjct: 407 QRRYVEGNLDFDVDENFITVENG----VVTDVSLRERG-IAERIIEQFMLVANTSACEFF 461
Query: 390 -----------------EAIATYGSFNNLALPYR---GQPQSNIDVSAFAHLPEGP---- 425
E ++ + F N AL Y+ + ++ F EG
Sbjct: 462 SSMGLNGIYRVHEEPDKEKLSGFIKFAN-ALGYKLRLHDGHYSKELEEFLKTIEGDKNEQ 520
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRG 481
+ + +++ M+ A H L + Y FTSPIRRY DL+ H + L G
Sbjct: 521 LFKTVLLRCMKKAVYTTENK-GHFALAIENYTHFTSPIRRYPDLMVHRILSNILLG 575
>gi|436842806|ref|YP_007327184.1| Ribonuclease II [Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432171712|emb|CCO25085.1| Ribonuclease II [Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 687
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 158/345 (45%), Gaps = 8/345 (2%)
Query: 191 LKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFL 250
L + +ID ++DDA + ++ DG + I +A P + G D+ MKRGTS++L
Sbjct: 293 LPMRSIDAATTKDIDDAFNLIKKDDGGYTLTIALARPCMDWDFGGELDQAVMKRGTSIYL 352
Query: 251 PTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYES 310
P T M PE L + +SL GE+ A+ + + G + S +K T TY +
Sbjct: 353 PEGTSHMMPEALGIGALSLFAGELRPALITTFEIDQLGVVTSVSPHTGWVKITDNSTYIA 412
Query: 311 ATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN-PEDPEPIINLY 369
++L ++E L E + L+ R++ GA+ E + + PE + +
Sbjct: 413 VEQMLRDGSDDEMALAF--ELSEKLLELRIKNGAVVIRRPEPELSLDGWPEKTS--VKIS 468
Query: 370 VEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSS 429
++ A +++SE MIL + + + L YR Q + S + + P
Sbjct: 469 TKEDTARADQIISEFMILANSGLGKFAEDHGFPLLYRT--QDIVLPSDLSGIVTEPHEIF 526
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAG 489
V+ M ++ P +H L + GY TSP+RRY D + Q+ L E P + +
Sbjct: 527 QRVRQMVPPQME-TVPKKHATLAVTGYSPITSPLRRYADFINMAQLCHYLMEEQPKWDSD 585
Query: 490 QLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
+L+ +A + ++ + ++ RYW + +L + K+ Q+ ++
Sbjct: 586 ELKALADTLQLRLQSVIKIQRFRPRYWKLLYLLQNKKQWQHAVIV 630
>gi|374599198|ref|ZP_09672200.1| RNAse R [Myroides odoratus DSM 2801]
gi|423324342|ref|ZP_17302183.1| ribonuclease R [Myroides odoratimimus CIP 103059]
gi|373910668|gb|EHQ42517.1| RNAse R [Myroides odoratus DSM 2801]
gi|404608434|gb|EKB07898.1| ribonuclease R [Myroides odoratimimus CIP 103059]
Length = 725
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 101/421 (23%), Positives = 182/421 (43%), Gaps = 63/421 (14%)
Query: 169 KDISNFLQK-----AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
K++ F K E+ + R+D+ + + ID +A + DDALS L++G ++ IH
Sbjct: 235 KEVEEFANKLDTSIQEEEVAKRRDMREVLTFTIDPKDAKDFDDALSFQTLENGNYEIGIH 294
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR------------- 270
+AD + Y+ G++ D +A R TSV+L T PM PE L+ SLR
Sbjct: 295 IADVSHYVREGTILDDEAFHRATSVYLVDRTVPMLPEVLSNFACSLRPHEDKYTFSAVFE 354
Query: 271 ---QGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESAT---ELLHLNLEEEAE 324
+GE+ N+ V HSD +A Y II+ ES + E+ ++ E
Sbjct: 355 MNAKGELVNSWFGRTVTHSDQRMA-YEEAQYIIETQDRTVPESISITGEVQEISEEVAHA 413
Query: 325 LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEM 384
+ L++ A + Q R++ GAI +E + + + +P + ++ ++ D A L+ E
Sbjct: 414 VLTLNKLAHILRQKRMKAGAISFDKVEVKFNLNSESEP---VGVFFKEAKD-ANHLIEEF 469
Query: 385 MILCGEAIATYGSFNNLALPYRGQPQSNID--------VSAFAH---------------- 420
M+L ++ + YR + + D +S F H
Sbjct: 470 MLLANRKVSEFIGKQKKTFVYRIHDEPDQDKLFGLQAIISRFGHSLNFKSRDTISKSLNE 529
Query: 421 -------LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHY 473
E + + ++ M A+ + + H L Y FTSPIRRY D++AH
Sbjct: 530 LLKNVQGKKEQNLVDTLAIRSMSKASYS-TQNIGHYGLAFDYYSHFTSPIRRYPDVMAHR 588
Query: 474 QVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRAL 533
++ L G +A + E + +A S++Y +++++ Q K++ + +
Sbjct: 589 LLEFYLHG-GNSVNAEEYETKCKHCSAMENLAANAERDSIKYMQVKYMQDQ-KDKAFTGV 646
Query: 534 I 534
I
Sbjct: 647 I 647
>gi|451970446|ref|ZP_21923672.1| exoribonuclease II [Vibrio alginolyticus E0666]
gi|451933532|gb|EMD81200.1| exoribonuclease II [Vibrio alginolyticus E0666]
Length = 667
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 168/380 (44%), Gaps = 51/380 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I N+ K +D L R D+TH+ ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAQNDLPNSEPAGIENWELK-DDADLERVDMTHVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + + G ++ I +ADPT YI P DK A +RG +++LP PM P LA
Sbjct: 215 ALYAKKTESGDFELTIAIADPTAYITPEDEMDKVARERGYTIYLPGRNIPMLPRDLADNL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEEAE- 324
SL +GE+ A+ +V ++ DG I + + IK L Y+ ++ L E +
Sbjct: 275 CSLIEGEIRPAICCTVTVNKDGVIGDDIKFFAANIKSHARLAYDHVSDWLENGSSEAWQP 334
Query: 325 -------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
++ L + + R +WR + + + R +++ D ++ ++ D A
Sbjct: 335 SEEIATIVRDLYDFSLARAEWREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LC-GEAIAT---YGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSA 430
RLV E MI +C G + G FN A G I+ PEG + +A
Sbjct: 391 NRLVEESMITANICAGRTLRDKFETGVFNTHA----GIKTEKIEEVVQLVNPEGALEFTA 446
Query: 431 --IVKIMRAAA------------IDFR------------KPVRHGVLGLPGYVQFTSPIR 464
I + AA +D R +P+ H +GL Y +TSPIR
Sbjct: 447 ESITTLEGFAALRRWLAAQETSYLDNRIRKFQAYSEVGNQPLPHYAMGLDIYATWTSPIR 506
Query: 465 RYMDLLAHYQVKACLRGESP 484
+Y D++ H +KA + G+ P
Sbjct: 507 KYGDMINHRMLKAVILGKEP 526
>gi|418132815|ref|ZP_12769688.1| ribonuclease R [Streptococcus pneumoniae GA11304]
gi|353806771|gb|EHD87044.1| ribonuclease R [Streptococcus pneumoniae GA11304]
Length = 765
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ +R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEDRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|451342739|ref|ZP_21911822.1| ribonuclease R [Eggerthia catenaformis OT 569 = DSM 20559]
gi|449338470|gb|EMD17615.1| ribonuclease R [Eggerthia catenaformis OT 569 = DSM 20559]
Length = 719
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 156/338 (46%), Gaps = 47/338 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL L ID + A +LDDA+S L + ++ +H+AD + Y+ GS D +A++R
Sbjct: 235 RTDLRDLLTVTIDGETAKDLDDAVSLRVLNNHHYELGVHIADVSYYVTEGSPLDDEAIER 294
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
GTS++L PM P KL+ SL +G + T+S + D G + ++ + ++I
Sbjct: 295 GTSIYLVDRVIPMLPHKLSNGICSLNEG--ADRYTISCFMEIDQQGKVVDHKILPTVINS 352
Query: 303 TYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+ +TY + ++L + + E + + E + + + R +GAID T E I
Sbjct: 353 NHRMTYTNVNKILAGDKKVRKEYDDSIELFETMKELSDILTKKRNIRGAIDFDTQEAEII 412
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--------- 406
V N P +++ + ++ + + R++ M+ E +A + + +L YR
Sbjct: 413 VDNKGKP---LDVVLRERGE-SERIIESFMLAANETVAEHFKWMDLPFIYRIHETPKTKK 468
Query: 407 -------GQPQSNIDVSAFAHL---------------PEGPVRSSAIVKIMRAAAIDFRK 444
+P + H+ PE P+ S+ +++ M+ A D R+
Sbjct: 469 LQQFLAIAKPLGYTIHGSLDHIRPKELSKIINKSKGRPEHPIISTLLLRSMQKARYD-RE 527
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ H L Y FTSPIRRY DLL H ++ L E
Sbjct: 528 CLGHFGLADDFYTHFTSPIRRYPDLLVHRLIRTYLFNE 565
>gi|336386389|gb|EGO27535.1| hypothetical protein SERLADRAFT_346957 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1075
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 156/351 (44%), Gaps = 53/351 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD+ V+ +D A +LDDA+S DG + IH+AD + +++P + D+DA KR
Sbjct: 500 RKDMRQDLVFTVDPGSAKDLDDAMSVKANDDGTYDIGIHIADVSYFVKPNTALDRDARKR 559
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P L+ E SL G+ A + + D + ++IK
Sbjct: 560 ATSVYLVQRAVPMLPPTLSEEACSLNPGQERLAFSAIFTMTKDAKVVNKWFGKTVIKSAA 619
Query: 305 MLTYESATELL-------------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
++YE A +++ H E ++K+L+ A R Q GA+ +T++
Sbjct: 620 KISYEKAQKVIDGHVLGDVPVTPDHDAAAIEHDIKVLNSLAKQLRARRFQDGALSLSTMQ 679
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN--NLALPYRGQP 409
+ K+ P I+ + + +D A LV E M++ ++A + + AL R
Sbjct: 680 LQFKLDESGLP---IDCWQHESSD-ANELVEEFMLMTNVSVAQRVAVHLPEQALLRRHDN 735
Query: 410 QSNIDVSAFAHLPEG---PVRSSAIVKIMR-----------------------------A 437
+ ++AF+ + + +S+ IMR A
Sbjct: 736 PIDRRLAAFSERAKRLGYEIDTSSPGAIMRSFQSVTNPTARRLLELLSHKATHRAKYFCA 795
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR-GESPPFS 487
+D K H L +P Y FTSPIRRY D+L H Q+++ L+ G P F+
Sbjct: 796 GMLDIAK-YNHYALNVPLYTHFTSPIRRYADVLVHRQLESVLQSGAEPKFT 845
>gi|423416984|ref|ZP_17394073.1| ribonuclease R [Bacillus cereus BAG3X2-1]
gi|401108402|gb|EJQ16333.1| ribonuclease R [Bacillus cereus BAG3X2-1]
Length = 810
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 160/341 (46%), Gaps = 44/341 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILEDEDEELVKRYEPLVPMFKEMGQLAQILREKRMRRGAIDFDF 424
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 425 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 480
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 481 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEIVISTVMLRSMKQA 540
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D + + H L Y FTSPIRRY D + H ++ +
Sbjct: 541 RYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|260585036|ref|ZP_05852778.1| ribonuclease R [Granulicatella elegans ATCC 700633]
gi|260157232|gb|EEW92306.1| ribonuclease R [Granulicatella elegans ATCC 700633]
Length = 775
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 162/369 (43%), Gaps = 57/369 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
RKDL ID +A +LDDA++ + +DG ++ + +AD + Y+ S D++A +
Sbjct: 258 GRKDLRGQLTVTIDGADAKDLDDAVALTKREDGTFELTVSIADVSYYVTENSAIDREAFE 317
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P++L+ SL E ++ + + G+I +Y + S+I+
Sbjct: 318 RGTSVYLTDRVVPMLPQRLSNGICSLHPHEERLTMSCRMEIDRSGTIYQYEIFPSVIRSD 377
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQW----------RLQQGAIDTATLETR 353
LTY EL E+ E++I E + L R ++GAID T E +
Sbjct: 378 MRLTYSLVNELY-----EKKEVEIQDEIQQMLLDMKELHHILERRRKERGAIDFETHEAK 432
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
I V P I++ + ++ A RL+ M+ E +A + N+ YR Q
Sbjct: 433 IIVDEQGAP---IDIQIRERG-VAERLIESFMLAANETVAMHYQRKNVPFIYRVHEQPQQ 488
Query: 414 D--------VSAFAHLPEGP-----------------------VRSSAIVKIMRAAAIDF 442
+ V+AF +G V S+ +++ M+ A D
Sbjct: 489 EKMQRFLEFVTAFGINIKGTSDTISPKKLQKALDEVKGETYEAVVSTMMLRSMKQAKYDI 548
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVK------ACLRGESPPFSAGQLEGMAS 496
P H L Y FTSPIRRY DL+ H ++ + L + +A +LE +A
Sbjct: 549 -IPSGHYGLAAEDYTHFTSPIRRYPDLIVHRMIRQYEGSGSFLSKQQEELNASKLERIAD 607
Query: 497 IVNMQTRIA 505
+ R+A
Sbjct: 608 QSSKMERLA 616
>gi|344344360|ref|ZP_08775223.1| ribonuclease II [Marichromatium purpuratum 984]
gi|343804030|gb|EGV21933.1| ribonuclease II [Marichromatium purpuratum 984]
Length = 610
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 173/384 (45%), Gaps = 55/384 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL+ +AID + ++ DDALS L+ RI ++HVAD + P D +A R
Sbjct: 234 RLDLTHLEAFAIDDEGNEDPDDALS---LEGERI--WVHVADVGALVAPDGPLDLEARSR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G +++LP M P E G+ L+ V A++ ++ G + + V S ++
Sbjct: 289 GANLYLPEGMVKMLPSETTTRLGLGLQP--VSPALSFAMRCDERGELRDLEVHRSWVR-V 345
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY + L +E L A R GA A E ++V ED E
Sbjct: 346 QRLTYGEVEQRL-----DEVPFAALRATIARFHDRRQANGATRLALPEVSVRV---EDGE 397
Query: 364 ----PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
P++ L + LV++ M++ GEA A LA+P+ Q +
Sbjct: 398 VRIRPLLRLESRE-------LVTDAMLMAGEAAARLCLEQGLAIPFATQATPD------- 443
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVR-------HGVLGLPGYVQFTSPIRRYMDLLAH 472
P ++ + M A F KP R H LGLP Y + TSP+RRY DLL H
Sbjct: 444 -----PAEEASDLASMYARRRCF-KPTRLLCEPDLHAGLGLPLYTRATSPLRRYSDLLVH 497
Query: 473 YQVKACLRGESPPFSAGQLE--GMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQY 530
Q++A L G +P +E A + R RLSN ++W + +LR P R
Sbjct: 498 QQLRAWLAGATPLDREQVMERVAQAELAASAVRRGERLSN---QHWKLVYLRDNPGWRGE 554
Query: 531 RALILRFIKDRTAALLLVEVGLQA 554
++ +++R A +L+ E+ L+A
Sbjct: 555 GVVV--GLEERRAVVLVPELALEA 576
>gi|296413629|ref|XP_002836512.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630338|emb|CAZ80703.1| unnamed protein product [Tuber melanosporum]
Length = 792
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 176/398 (44%), Gaps = 62/398 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD ++V+ ID +A E+DD +S R+ D V++H+A+PT +I + A +R
Sbjct: 310 RKDWGDMQVFTIDDPDAYEIDDGVSLERVSDTENWVHVHIANPTAFIPEDHWIAEIAKRR 369
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
T+ +LP Y M PE + G L +++S ++ G I ++ + ++
Sbjct: 370 ATAHYLPDKFYSMLPE--GITGTFLGVAPNKPVMSISTKVNDKGEILDHKIQAGFVRNVR 427
Query: 305 MLTYESATELL--HLNLEEEAELKI--------------------LSEAAALR------L 336
TY++ L + + A+L+I LS+ LR
Sbjct: 428 RTTYDAVDHALGSYQTVNFIADLRIGKFPSRLRATSKADKFTPKQLSDLQKLRDIALTVR 487
Query: 337 QWRLQQGAIDTATLETRIKVAN-------PEDP--------EPIINLYVEDQADPAMR-- 379
+ R + G I A+ +++V N P + P ++L V D A +R
Sbjct: 488 RRRARDGLITLASANLQVEVYNGLGSRNHPYNSSYPVLYRGHPAVHLTVADSAAVELRDS 547
Query: 380 --LVSEMMILCGEAIATYGSFNNLALPYR------GQPQ--SNIDVSAFAHLPE--GPVR 427
+VSEMM L + + LA+PYR G+P I+ + + P
Sbjct: 548 QLMVSEMMSLANNVASIWSRERRLAMPYRVMEYDYGRPDVVKTIEETVLPRRTDLGCPPF 607
Query: 428 SSAIVKIMRAAAIDFR-KPVRHGVLGLP-GYVQFTSPIRRYMDLLAHYQVKACLRGESPP 485
S I +M + P H ++GLP GY + TSP+RRY D+LA YQ+++ L SP
Sbjct: 608 DSTIRWLMLLGQTRLQASPGPHMLMGLPTGYAKATSPLRRYADMLAQYQIQSVLLNRSPK 667
Query: 486 FSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRR 523
+A QLE + + V + A+ +S + R W ++R
Sbjct: 668 -TAAQLEPIIASVQRTEQTAKHISKEANRLWSAVAIKR 704
>gi|336373570|gb|EGO01908.1| hypothetical protein SERLA73DRAFT_48904 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1158
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 156/351 (44%), Gaps = 53/351 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD+ V+ +D A +LDDA+S DG + IH+AD + +++P + D+DA KR
Sbjct: 564 RKDMRQDLVFTVDPGSAKDLDDAMSVKANDDGTYDIGIHIADVSYFVKPNTALDRDARKR 623
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P L+ E SL G+ A + + D + ++IK
Sbjct: 624 ATSVYLVQRAVPMLPPTLSEEACSLNPGQERLAFSAIFTMTKDAKVVNKWFGKTVIKSAA 683
Query: 305 MLTYESATELL-------------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
++YE A +++ H E ++K+L+ A R Q GA+ +T++
Sbjct: 684 KISYEKAQKVIDGHVLGDVPVTPDHDAAAIEHDIKVLNSLAKQLRARRFQDGALSLSTMQ 743
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN--NLALPYRGQP 409
+ K+ P I+ + + +D A LV E M++ ++A + + AL R
Sbjct: 744 LQFKLDESGLP---IDCWQHESSD-ANELVEEFMLMTNVSVAQRVAVHLPEQALLRRHDN 799
Query: 410 QSNIDVSAFAHLPEG---PVRSSAIVKIMR-----------------------------A 437
+ ++AF+ + + +S+ IMR A
Sbjct: 800 PIDRRLAAFSERAKRLGYEIDTSSPGAIMRSFQSVTNPTARRLLELLSHKATHRAKYFCA 859
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR-GESPPFS 487
+D K H L +P Y FTSPIRRY D+L H Q+++ L+ G P F+
Sbjct: 860 GMLDIAK-YNHYALNVPLYTHFTSPIRRYADVLVHRQLESVLQSGAEPKFT 909
>gi|118498033|ref|YP_899083.1| ribonuclease R [Francisella novicida U112]
gi|194323258|ref|ZP_03057042.1| ribonuclease R [Francisella novicida FTE]
gi|118423939|gb|ABK90329.1| ribonuclease R [Francisella novicida U112]
gi|194322622|gb|EDX20102.1| ribonuclease R [Francisella tularensis subsp. novicida FTE]
Length = 765
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 150/348 (43%), Gaps = 47/348 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D A+ G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
M A G L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|385793430|ref|YP_005826406.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678755|gb|AEE87884.1| 3'-to-5' exoribonuclease RNase R [Francisella cf. novicida Fx1]
Length = 765
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 150/348 (43%), Gaps = 47/348 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D A+ G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
M A G L Y FTSPIRRY DL+ H +K+ +
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVHRIIKSII 590
>gi|322391817|ref|ZP_08065282.1| ribonuclease R [Streptococcus peroris ATCC 700780]
gi|321145297|gb|EFX40693.1| ribonuclease R [Streptococcus peroris ATCC 700780]
Length = 780
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 159/347 (45%), Gaps = 55/347 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TS+++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSIYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKNGRVRNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K + + L + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRREYKKIVPSIELMAKLHETLESMRIKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDIVLRH----RGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID------------------------VSAFAHLPEGPVRSSAIVKIM 435
+P Q ID +SA P V S +++ M
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMSAVEGEPYADVLSMMLLRSM 534
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
+ A HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHN---HGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|262396819|ref|YP_003288672.1| exoribonuclease II [Vibrio sp. Ex25]
gi|262340413|gb|ACY54207.1| exoribonuclease II [Vibrio sp. Ex25]
Length = 667
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 168/380 (44%), Gaps = 51/380 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I N+ K +D L R D+TH+ ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAQNDLPNSEPAGIENWELK-DDADLERVDMTHVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + + G ++ I +ADPT YI P DK A +RG +++LP PM P LA
Sbjct: 215 ALYAKKTESGDFELTIAIADPTAYITPEDEMDKVARERGYTIYLPGRNIPMLPRDLADNL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEEAE- 324
SL +GE+ A+ +V ++ DG I + + IK L Y+ ++ L E +
Sbjct: 275 CSLIEGEIRPAICCTVTVNKDGVIGDDIKFFAANIKSHARLAYDHVSDWLENGSSEAWQP 334
Query: 325 -------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
++ L + + R +WR + + + R +++ D ++ ++ D A
Sbjct: 335 SEEIATIVRDLYDFSLARAEWREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LC-GEAIAT---YGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSA 430
RLV E MI +C G + G FN A G I+ PEG + +A
Sbjct: 391 NRLVEESMITANICAGRTLRDKFETGVFNTHA----GIKTEKIEEVVQLVNPEGALEFTA 446
Query: 431 --IVKIMRAAA------------IDFR------------KPVRHGVLGLPGYVQFTSPIR 464
I + AA +D R +P+ H +GL Y +TSPIR
Sbjct: 447 ESITTLEGFAALRRWLAAQETSYLDNRIRKFQAYSEVGNQPLPHYAMGLDIYATWTSPIR 506
Query: 465 RYMDLLAHYQVKACLRGESP 484
+Y D++ H +KA + G+ P
Sbjct: 507 KYGDMINHRMLKAVILGKEP 526
>gi|88704453|ref|ZP_01102167.1| ribonuclease R [Congregibacter litoralis KT71]
gi|88701504|gb|EAQ98609.1| ribonuclease R [Congregibacter litoralis KT71]
Length = 866
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 157/340 (46%), Gaps = 39/340 (11%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+ AE + R DL ID ++A + DDA+ + + G ++++ +AD + Y+ GS
Sbjct: 283 EPAEGDKRYRVDLRKKPFVTIDGEDARDFDDAVYCEKRRIGGWRLWVAIADVSHYVGVGS 342
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
DK+A++RG SV+ P PM PE L+ SL+ A+ V + + ++G + ++
Sbjct: 343 ALDKEAIERGNSVYFPERVVPMLPEVLSNGLCSLKPRVDRLALAVEMEIGNNGELKQFRF 402
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL------QWRLQQGAIDTAT 349
+II LTY E+L E + K++ L Q R ++GAID T
Sbjct: 403 CEAIIHSHARLTYTQVAEVLETGASEAIDRKLVPHLEQLHALYKVLRQAREERGAIDFET 462
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--- 406
+ETRI + E I+ V Q + A +L+ E M+ A A + + L + YR
Sbjct: 463 VETRIIF----NEERKIDAIVPVQRNDAHKLIEECMLCANVAAARFFERHELPVLYRVHE 518
Query: 407 GQPQSNI-DVSAFAH------------LPEG--------PVRSSA-IVKIM----RAAAI 440
G + + ++ AF PE R A IV++M A+
Sbjct: 519 GPGEQKLENLRAFLGELGLGLRGGLKPTPEDYQLLIEQISTRDDAHIVQMMLLRSLTQAV 578
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLR 480
+ + H L PGY FTSPIRRY DLL H +++ +R
Sbjct: 579 YQAENLGHFGLNYPGYAHFTSPIRRYPDLLVHRAIRSVIR 618
>gi|423687697|ref|ZP_17662500.1| exoribonuclease II [Vibrio fischeri SR5]
gi|371493480|gb|EHN69083.1| exoribonuclease II [Vibrio fischeri SR5]
Length = 676
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 189/417 (45%), Gaps = 48/417 (11%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KG+ E K+ D V+ + Q P G + + + + I P VT +
Sbjct: 116 RKGVNPETLKEGDWVVAELTQHPLKGDQGFQCDITHKITDSDDKIAPWWVTLAQNDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ + I ++ K + +L+ R D+T ID + ++DDAL +L++G ++ I +AD
Sbjct: 176 EPEGIEHWEIKDDADLV-RVDMTATPFVTIDGESTKDMDDALYIKKLENGSFELTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P L+ E SL +G+ A+ +V++ +
Sbjct: 235 PTAYITPDDSMDKVARERGYTIYLPGRNIPMLPRDLSDELCSLIEGQERPALCCTVIVDA 294
Query: 287 DGSIAEYSVD--NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRL 336
+G+I E S++ + IK L Y+ ++ L ++ + + L E A +R
Sbjct: 295 EGNIQEQSINFFAATIKSHARLAYDHVSDFLETGSCDKWQPNDTIAQVVTELYEFAQVRT 354
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG---- 389
WR I + R +++ D +I ++ D A +LV E M+ +C
Sbjct: 355 TWRETHAVIFPDRPDYRFELSEDND---VIAIHA-DMRRTANKLVEEAMVTANICAGKTL 410
Query: 390 EAIATYGSFNNLALPYRGQPQSNIDV-----------------SAFAHLPE--GPVRSS- 429
A G FN+ A + + I++ F+ L G +S
Sbjct: 411 RAAFNMGVFNSHAGIKSDKLKDVIEIVNQLDGVEFTEEQIATLEGFSELRRLLGKQPTSY 470
Query: 430 --AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
A ++ + + +P+ H +GL Y +TSPIR+Y D++ H +KA + G+ P
Sbjct: 471 LDARIRKFQTYSETGNEPLPHYAMGLDIYATWTSPIRKYSDMINHRMLKAHILGKEP 527
>gi|332687037|ref|YP_004456811.1| 3'-to-5' exoribonuclease RNase R [Melissococcus plutonius ATCC
35311]
gi|332371046|dbj|BAK22002.1| 3'-to-5' exoribonuclease RNase R [Melissococcus plutonius ATCC
35311]
Length = 784
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 169/381 (44%), Gaps = 50/381 (13%)
Query: 172 SNFLQK--AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
+N+L E+ LLNRKDL ++ ID ++A +LDDA++ +L +G + +H+AD +
Sbjct: 245 ANYLSDNFTEEELLNRKDLRDQQIVTIDGEDAKDLDDAVTVKKLNNGNYYLGVHIADVSH 304
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y++ GS DK+A +RGTSV+L PM P++L+ + SL + + ++ G
Sbjct: 305 YVKEGSFIDKEAYERGTSVYLIDRVIPMIPQRLSNDICSLNPKVPRLTLGCEMEINHQGK 364
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEE-----EAELKILSEAAALRL---QWRLQ 341
+ + + S+I+ +TY + E+L + ++ + + E L L R Q
Sbjct: 365 VVHHEIFPSVIQTAERMTYTAVNEILEDQNTQTMRHYQSLVPMFKEMQELHLILSTMREQ 424
Query: 342 QGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL 401
+GA+ E+RI V +P+ I + R+V M++ E +A + +++L
Sbjct: 425 RGALSFDDHESRIIVNEAGEPQRI----ELRERGIGERIVESFMLIANETVAKH--YHDL 478
Query: 402 ALPY----RGQPQSNIDVSAFAHL-----------------------------PEGPVRS 428
LP+ QP+ F + PE V +
Sbjct: 479 KLPFIYRIHEQPKEEKMQRFFDFISILGILIKGSKSEITPKDLQSALRKVMGRPEEAVVN 538
Query: 429 SAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSA 488
+ +++ M+ A +G L Y FTSPIRRY DL+ H + + S
Sbjct: 539 TILLRSMQQARYSENNYGHYG-LAATYYTHFTSPIRRYPDLIVHRLIHTYNQDSSEKTKE 597
Query: 489 GQLEGMASIVNMQTRIARRLS 509
+ I N +++ RR +
Sbjct: 598 RWATQLPDIANHSSQMERRAT 618
>gi|307127475|ref|YP_003879506.1| ribonuclease R [Streptococcus pneumoniae 670-6B]
gi|421233962|ref|ZP_15690584.1| ribonuclease R [Streptococcus pneumoniae 2061617]
gi|421249269|ref|ZP_15705731.1| ribonuclease R [Streptococcus pneumoniae 2082239]
gi|306484537|gb|ADM91406.1| ribonuclease R [Streptococcus pneumoniae 670-6B]
gi|395602859|gb|EJG63001.1| ribonuclease R [Streptococcus pneumoniae 2061617]
gi|395614570|gb|EJG74589.1| ribonuclease R [Streptococcus pneumoniae 2082239]
Length = 784
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 162/344 (47%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ +R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEDRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|386285812|ref|ZP_10063019.1| RNAse R [gamma proteobacterium BDW918]
gi|385281086|gb|EIF44991.1| RNAse R [gamma proteobacterium BDW918]
Length = 911
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 190/439 (43%), Gaps = 68/439 (15%)
Query: 106 ENQVLQKGLLLE-----FKKDSDRVLLAVAQRPD------GKKNWMVYDQN----GASCS 150
EN +Q L LE K+ D V++ + Q+P G+ ++ D+ +
Sbjct: 173 ENTRIQNWLALEDNDVATAKEGDYVMVELTQQPGQRQQARGRITEVLGDRRTVGVATELA 232
Query: 151 IKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSA 210
I+ + F P + + + + + AE + +R DL L + ID ++A + DDA+
Sbjct: 233 IRSHDIPFEWPEAVEEEARRFGS--EPAEADKAHRVDLRQLPLVTIDGEDARDFDDAVYC 290
Query: 211 MRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR 270
+ G ++++ +AD + Y++ GS D++A KR TSV+ P PM PE L+ SL+
Sbjct: 291 EPKKTGGYRLWVAIADVSHYVQVGSALDQEAHKRATSVYFPDRVVPMLPEALSNGLCSLK 350
Query: 271 QGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHL-----------NL 319
+ + + + G ++ Y +I+ LTY LL L N
Sbjct: 351 PDVDRLTMVCEMTISASGKLSGYVFYEGLIRSHARLTYNEVGALLELEGVDPKHNTGRNA 410
Query: 320 EEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMR 379
+L+ L + + + R ++GAID T+ETRI + + E I+ + D A +
Sbjct: 411 HLLPQLRYLHDLYKVLRKARSERGAIDFETVETRIVFDDEKRIEAIVPIRRHD----AHK 466
Query: 380 LVSEMMILCGEAIATYGSFNNLALPYR--------------------------GQPQSNI 413
L+ E M+ A A + L YR G+ S
Sbjct: 467 LIEECMLCANVATARALDRSGLEALYRVHSGPSEQKLTNLREFLGEIGLSLQGGEEPSPK 526
Query: 414 DVSA-FAHLPEGPVRSSAIVKIM--RAAAIDFRKPVRHGVLGL--PGYVQFTSPIRRYMD 468
D ++L E P +A+++ M R+ + P G GL GY FTSPIRRY D
Sbjct: 527 DYQMLLSNLGERP--DAAVIQTMMLRSLSQAVYHPENEGHFGLHYAGYTHFTSPIRRYPD 584
Query: 469 LLAHYQVKACLR---GESP 484
LL H ++ +R GE+P
Sbjct: 585 LLVHRALRYLVRSGGGEAP 603
>gi|373462749|ref|ZP_09554431.1| ribonuclease R [Lactobacillus kisonensis F0435]
gi|371766217|gb|EHO54483.1| ribonuclease R [Lactobacillus kisonensis F0435]
Length = 773
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 155/330 (46%), Gaps = 46/330 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R+D+T + ID + + +LDDA++A +L +G + +H+AD + Y++P SL DK+A
Sbjct: 254 VGREDITDQDLVTIDGESSKDLDDAVTAWKLPNGNFHLGVHIADVSHYVKPDSLLDKEAF 313
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSV+L PM P +L+ SL +GE+ ++ + + G++ + + S+++
Sbjct: 314 RRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCEMEIDQSGNVINHRIHPSLMRS 373
Query: 303 TYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRI 354
T +TY + ++L + E+ +++ + + + R +GAID E I
Sbjct: 374 TARMTYTAVNKILESHDEKTMAHYEKLVPMFEVMGQLHKILYKHRKARGAIDFDDNEAEI 433
Query: 355 KVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
V E PI I L + A+ R++ M+ E +A + S ++ YR +
Sbjct: 434 IVD--EKGHPIDIKLRIRGLAE---RMIESFMLAANETVAKHYSDKHVPFIYRVHETPDA 488
Query: 414 D--------VSAF-----------------------AHLPEGPVRSSAIVKIMRAAAIDF 442
D ++AF A PE + S +++ ++ A
Sbjct: 489 DRIRTFFQTLTAFGINVKGDPEHVTPKTLQNVLKKVAGKPEEMMVSVMLLRSLKQARY-A 547
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L P Y FTSPIRRY D + H
Sbjct: 548 DQSLGHFGLAAPYYTHFTSPIRRYPDTMVH 577
>gi|392568788|gb|EIW61962.1| RNB-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1258
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 52/348 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL +V+ ID ++A +LDDA+S +DG + +H+AD + +++P + D+DA KR
Sbjct: 676 RKDLRSERVFTIDPEDAKDLDDAVSVKVNEDGTYDIGVHIADVSYFVKPNTALDRDARKR 735
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P L+ + SL G+ A +V + D + + +IIK
Sbjct: 736 ATSVYLVQRAVPMLPPTLSEQVCSLLPGQERLAFSVIFTVSKDAKVVKKWFGKTIIKSAA 795
Query: 305 MLTYESATELL-------------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
L+Y A ++ H ++K+L + A R Q G + + +L
Sbjct: 796 KLSYNDAHGVIDGKSLGDVPIIPEHDAAGISHDIKVLDDIAKQLRARRFQNGCVKSNSLR 855
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS--FNNLALPYRGQP 409
+ K+ P ++ ++ + A L+ E M+L A+A + F+ A+ R
Sbjct: 856 LKFKLDESGLP---VDCGSYERTE-AHNLIEEFMLLTNMAVAQQIAVHFSEQAMLRRHDT 911
Query: 410 QSNIDVSAFAHLPEG---PVRSSAIVKIMR-----------------------------A 437
S + AFA + + SS++ +MR A
Sbjct: 912 PSERRLGAFAERAQRLGYTIDSSSVGTLMRSIEAVQDPTARNVLELFLQKASPRAKYFCA 971
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPP 485
+D K H L +P Y FTSPIRRY D++ H Q+ A L+G P
Sbjct: 972 GMLDIAK-YGHYALNIPLYSHFTSPIRRYADIIVHRQLDAILQGGPEP 1018
>gi|418148400|ref|ZP_12785165.1| ribonuclease R [Streptococcus pneumoniae GA13856]
gi|353813075|gb|EHD93308.1| ribonuclease R [Streptococcus pneumoniae GA13856]
Length = 784
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 161/344 (46%), Gaps = 49/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANEIVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
HG GL Y FTSPIRRY DLL H ++ R
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGR 578
>gi|326791902|ref|YP_004309723.1| ribonuclease R [Clostridium lentocellum DSM 5427]
gi|326542666|gb|ADZ84525.1| ribonuclease R [Clostridium lentocellum DSM 5427]
Length = 733
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 167/360 (46%), Gaps = 57/360 (15%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+I N + A+ + R DL +++ ID ++A +LDDA+S +L++G ++ +H+AD
Sbjct: 235 KEIENIPSEVADKDKKGRTDLRAIQMVTIDGEDAKDLDDAISIEKLENGNYRLGVHIADV 294
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
T Y++ S DK+A +RGTS++L PM P KL+ SL A+T +V+ +
Sbjct: 295 THYVKEHSPLDKEAYERGTSIYLVDRVIPMIPHKLSNGICSLNAHVDRLALTCMMVIDKN 354
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE---------LKILSEAAALRLQW 338
G++ + + ++I +TY + ++L L+ +E+ + K + E A + +
Sbjct: 355 GNVQSHEIMETLINIDERMTYTNVKKIL-LDEDEDVKERYKDLIPMFKTMEELADVLRKK 413
Query: 339 RLQQGAIDTATLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R+++GAID ET++ K P + +P + A R++ E M++C E IA
Sbjct: 414 RMKRGAIDFDFPETKVILDKEGVPLEMKPY-------DRNVATRIIEEFMLVCNETIAED 466
Query: 396 GSFNNLALPYRGQ----PQSNIDVSAFAH---------------------------LPEG 424
+ YR P+ + ++ F + PE
Sbjct: 467 YFWQEKPFVYRSHEDPDPEKILALTEFINNFGYQIKGNTTKIHPKDMQKVLAEIEGKPEE 526
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLRGE 482
+ S +++ M+ A +G GL Y FTSPIRRY DL H +K L E
Sbjct: 527 SIISHLLLRSMKQARYTAEC---NGHFGLAAKYYCHFTSPIRRYPDLQIHRIIKYNLHNE 583
>gi|307186828|gb|EFN72248.1| Exosome complex exonuclease RRP44 [Camponotus floridanus]
Length = 945
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 187/427 (43%), Gaps = 56/427 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E ++ R+DL HL + ++D ++DDAL L +G V +H+AD + +I PG+
Sbjct: 419 TEMDIAQREDLRHLDICSVDPPGCTDIDDALHCRNLPNGNFDVGVHIADVSHFIRPGTAL 478
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A R T+V+L M PE L+ SLR GE A + + SD +I
Sbjct: 479 DKEAASRATTVYLVDKRIDMVPELLSSNLCSLRGGEERFAFSCIWEIDSDANIVNTRFCK 538
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATLETRI 354
SII+ +TYE A + +++A L+ L++ A + RLQ GA+ A+ E R
Sbjct: 539 SIIRSRRAMTYEEAQLKIDDATQQDAIAQSLRGLNQIAKQLKKRRLQNGALTLASPEIRF 598
Query: 355 KVANPEDPEPIINLYVEDQADPAMR----LVSEMMILCGEAIA--TYGSFNNLALPYRG- 407
+V + E +PI D +R +V E M+L ++A F A+ R
Sbjct: 599 QV-DSETHDPI------DVEAKKLRETNSMVEEFMLLANISVAERILKEFPECAMLRRHP 651
Query: 408 -QPQSNIDVSAFAHLPEGPVRSS----------------------AIVKIMRA----AAI 440
PQSN + A +G + ++ ++KI+ A+
Sbjct: 652 EPPQSNFEPLIKAAKNQGFIINTNTGKELAQSLEESKKESNPYFNTMLKILATRCMLQAV 711
Query: 441 DF----RKP--VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPP---FSAGQL 491
F +P +H L P Y FTSPIRRY D++ H + C+ ++
Sbjct: 712 YFISGMHQPEEFKHYGLACPIYTHFTSPIRRYADIIVHRLLAVCIGADATYPQLLDKKNN 771
Query: 492 EGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVG 551
+ +N + R+A+ S+ F R + ++ + L F++ +L+ + G
Sbjct: 772 HLLCQNLNYRNRMAQYAGRASVALHTHLFFRDKVQDEEGYIL---FVRKNALQVLIPKYG 828
Query: 552 LQAAAWV 558
L+ ++
Sbjct: 829 LEGILYL 835
>gi|423375326|ref|ZP_17352663.1| ribonuclease R [Bacillus cereus AND1407]
gi|401092285|gb|EJQ00415.1| ribonuclease R [Bacillus cereus AND1407]
Length = 806
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 160/341 (46%), Gaps = 44/341 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILEDEDEELMKRYEPLVPMFKEMGQLAKILREKRMRRGAIDFDF 424
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 425 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 480
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 481 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA 540
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D + + H L Y FTSPIRRY D + H ++ +
Sbjct: 541 RYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|229020334|ref|ZP_04177100.1| Ribonuclease R [Bacillus cereus AH1273]
gi|229026565|ref|ZP_04182914.1| Ribonuclease R [Bacillus cereus AH1272]
gi|423388611|ref|ZP_17365837.1| ribonuclease R [Bacillus cereus BAG1X1-3]
gi|228734742|gb|EEL85387.1| Ribonuclease R [Bacillus cereus AH1272]
gi|228740970|gb|EEL91202.1| Ribonuclease R [Bacillus cereus AH1273]
gi|401642686|gb|EJS60392.1| ribonuclease R [Bacillus cereus BAG1X1-3]
Length = 808
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 160/341 (46%), Gaps = 44/341 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILEDEDEELVKRYEPLVPMFKEMGQLAQILREKRMRRGAIDFDF 424
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 425 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 480
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 481 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEIVISTVMLRSMKQA 540
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D + + H L Y FTSPIRRY D + H ++ +
Sbjct: 541 RYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|228942262|ref|ZP_04104801.1| Ribonuclease R [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228975192|ref|ZP_04135750.1| Ribonuclease R [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228981830|ref|ZP_04142125.1| Ribonuclease R [Bacillus thuringiensis Bt407]
gi|384189208|ref|YP_005575104.1| exoribonuclease II [Bacillus thuringiensis serovar chinensis CT-43]
gi|410677537|ref|YP_006929908.1| ribonuclease R [Bacillus thuringiensis Bt407]
gi|452201615|ref|YP_007481696.1| 3'-to-5' exoribonuclease RNase R [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228777942|gb|EEM26214.1| Ribonuclease R [Bacillus thuringiensis Bt407]
gi|228784471|gb|EEM32492.1| Ribonuclease R [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228817306|gb|EEM63392.1| Ribonuclease R [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326942917|gb|AEA18813.1| exoribonuclease II [Bacillus thuringiensis serovar chinensis CT-43]
gi|409176666|gb|AFV20971.1| ribonuclease R [Bacillus thuringiensis Bt407]
gi|452107008|gb|AGG03948.1| 3'-to-5' exoribonuclease RNase R [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 814
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 50/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A D + + H L Y FTSPIRRY D + H ++ +
Sbjct: 538 KQARYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|92113014|ref|YP_572942.1| ribonuclease R [Chromohalobacter salexigens DSM 3043]
gi|91796104|gb|ABE58243.1| RNAse R [Chromohalobacter salexigens DSM 3043]
Length = 801
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 153/359 (42%), Gaps = 53/359 (14%)
Query: 168 HKDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
H +I++ AE + NR DL + + ID + A + DDA+ A + + G K+ + +AD
Sbjct: 249 HAEIADMSASVAEADKQNRIDLRDVPLVTIDDESAKDFDDAVCAWKTKSGSWKLVVAIAD 308
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCN-AVTVSVVLH 285
+ Y+ PGS D++A+ RGTSV+ P PM PE L+ G+ EV A+ + +
Sbjct: 309 VSHYVRPGSALDQEAITRGTSVYFPGQVVPMLPELLS-NGLCSLNPEVDRLALVCEMNIS 367
Query: 286 SDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEE-----------AELKILSEAAAL 334
+G+I+ Y ++ + LTY +L E LK L +
Sbjct: 368 PNGAISRYRFYEAVFQSHARLTYNKVAAILDDEGPEADALREQYRNLVPSLKNLKSLYTI 427
Query: 335 RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT 394
+ R +GAID T ET I E I+ D A +++ E M+ A A
Sbjct: 428 LREAREARGAIDFETTETEIIFNEARKIEKIVPRSRND----AHKIIEECMLAANVATAR 483
Query: 395 YGSFNNLALPYR-----------------------------GQPQSNIDVS-AFAHLPEG 424
+ ++L YR PQ D++ A P+
Sbjct: 484 FLDKHDLPALYRIHEKPSPERLDKLRLFLNELGLSLGGGDDPTPQDYRDLAEAIKGRPDA 543
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGL--PGYVQFTSPIRRYMDLLAHYQVKACLRG 481
V + +++ M A P G GL P Y FTSPIRRY DLL H +++ +RG
Sbjct: 544 DVIQTVMLRSMSRAVY---SPQNDGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVIRG 599
>gi|444920135|ref|ZP_21239978.1| Ribonuclease R [Wohlfahrtiimonas chitiniclastica SH04]
gi|444508454|gb|ELV08623.1| Ribonuclease R [Wohlfahrtiimonas chitiniclastica SH04]
Length = 807
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 163/371 (43%), Gaps = 54/371 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E++ + RKD HL + ID A + DDA+ A ++ DG K+Y+ +AD Y+ G+ D
Sbjct: 268 EEDKVGRKDYRHLPLVTIDGITARDFDDAVYAEKVADGNFKLYVAIADVAHYVRLGNAID 327
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
DA+ RGTSV+ P PM PEKL+ SL + +++ G + +
Sbjct: 328 SDAITRGTSVYFPDRVIPMLPEKLSNGLCSLNPDVDRLCMVCELLISPTGEMISFEFFEG 387
Query: 299 IIKPTYMLTYESATELLHLN---LEEEAE-----LKILSEAAALRLQWRLQQGAIDTATL 350
+++ LTYE EL+ + ++ A+ L + LR + R Q+G+ID T
Sbjct: 388 VMRSHARLTYELVAELIGEDSPIQDDYAQIMPHILNLYQLYKVLR-KARDQRGSIDFETK 446
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQ 408
ET I + N E I V ++ A ++ E MI A AT+ N + YR +
Sbjct: 447 ETEI-LYNDEGLIDKIEFRVRNE---AHMIIEECMIAANIAAATFLEGNEIPTLYRVHAK 502
Query: 409 P-------------QSNIDVSA---------------FAHLPEGPVRSSAIVKIMRAAAI 440
P + N+ V A LPE + + +++ M A
Sbjct: 503 PPEERLTKLRRFLVEYNLGVEGGDAPEPRDFARTLAEAADLPEFDIIQTMMLRSMAQAVY 562
Query: 441 DFRKPVRHGVLG--LPGYVQFTSPIRRYMDLLAHYQVKACLR-----GESPPFSAGQLEG 493
+P G G L Y FTSPIRRY DL+ H +K + G P++ + G
Sbjct: 563 ---QPANEGHFGLSLTHYAHFTSPIRRYPDLIVHRGIKYLIHKAQGEGVKYPYNEKIMTG 619
Query: 494 MA-SIVNMQTR 503
+ S+ M+ R
Sbjct: 620 LGESLSEMERR 630
>gi|350563668|ref|ZP_08932489.1| ribonuclease R [Thioalkalimicrobium aerophilum AL3]
gi|349778803|gb|EGZ33154.1| ribonuclease R [Thioalkalimicrobium aerophilum AL3]
Length = 782
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 166/377 (44%), Gaps = 55/377 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E + +RKDL L + ID +++ + DDA+ A R ++G ++ + +AD + Y++PGS
Sbjct: 262 TEQDYADRKDLRSLPLVTIDGEDSKDFDDAVFAKRRKNG-WRLVVAIADVSHYVKPGSEL 320
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQG--EVCNAVTVSVVLHSDGSIAE--- 292
DK+A +RG SV+ P PM PEKL+ + SL VC +S+ DG +
Sbjct: 321 DKEAYERGNSVYFPQRVIPMLPEKLSNDLCSLNPNVDRVCMVCDMSIT--EDGQLERSQF 378
Query: 293 -YSVDNSIIKPTYMLTYESATELLHLNLEEEAE----LKILSEAAALRLQWRLQQGAIDT 347
+V NS + TY ++ T+ E AE + L E + R ++GA++
Sbjct: 379 YQAVMNSKARLTYNQVHQMVTDSSSAFRAEFAEVVDAVDQLYELYHILHAARAERGALEF 438
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR- 406
T+ETRI + II + D A RL+ E M++ A A Y ++ L + YR
Sbjct: 439 DTVETRIVFDGERKIDKIIPVVRND----AHRLIEECMLMANVAAARYLKWHKLPIVYRV 494
Query: 407 -------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIM-RAAAI 440
G S D +G I IM R+
Sbjct: 495 HEPPKEEKLTKLRGFLKDFGLSLEGGDEPSAQDFDQVLQAAQGMPSEHLIKTIMLRSMNQ 554
Query: 441 DFRKPVRHGVLGL--PGYVQFTSPIRRYMDLLAHYQVK-ACLRGESPPFSAGQLEGMASI 497
+P G GL Y FTSPIRRY DLL H ++ A L+ + F+ + E M
Sbjct: 555 AVYQPDNKGHFGLNFEHYAHFTSPIRRYPDLLIHRAIRQAWLKQGAQGFAYNE-EDM--- 610
Query: 498 VNMQTRIARRLSNTSLR 514
TR+ R S+T R
Sbjct: 611 ----TRMGRHCSDTERR 623
>gi|312863307|ref|ZP_07723545.1| ribonuclease R [Streptococcus vestibularis F0396]
gi|311100843|gb|EFQ59048.1| ribonuclease R [Streptococcus vestibularis F0396]
Length = 817
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 157/338 (46%), Gaps = 45/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++++L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 245 SQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNFELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A+ RGTSV++ PM PE+L+ SL + +T S ++ G + + +
Sbjct: 305 NREAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEITPKGKVVNHKI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
S+IK T+ +TY E+L N E+ + K ++E + R ++GA++
Sbjct: 363 CQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E RI V + P +++ V ++ A R++ M+ E +A + + L YR
Sbjct: 423 TSEARILVNDKGMP---VDIVVRERG-TAERMIESFMLAANECVAEHFAKTKLPFIYRIH 478
Query: 407 GQPQS-------------------------NIDVSAFAHLPEG-PVRSSAIVKIMRAAAI 440
+P++ +D+ F +G P + ++R+
Sbjct: 479 EEPKAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQ 538
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 539 ARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMIR 576
>gi|239618067|ref|YP_002941389.1| ribonuclease R [Kosmotoga olearia TBF 19.5.1]
gi|239506898|gb|ACR80385.1| ribonuclease R [Kosmotoga olearia TBF 19.5.1]
Length = 732
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 166/351 (47%), Gaps = 51/351 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
RKD +++ ID ++A + DDA+S +L++G + +H+AD + Y+ GS D++A +
Sbjct: 244 KRKDYRKDRIFTIDGEDAKDYDDAISIKKLKNGNYLLGVHIADVSHYVREGSALDREAYE 303
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P +L+ SL +GE +++ + + G + ++ V +I+
Sbjct: 304 RGTSVYLLDTVIPMLPFELSNGICSLVEGEDRLTLSLEMEIDPGGKVVDFKVHEGVIRSV 363
Query: 304 YMLTYESATELLHLNLEEE---------AELKILSEAAALRLQWRLQQGAI-DTATLETR 353
LTY L+ + + + EL + E A + WR ++G++ D ++ E +
Sbjct: 364 RRLTYTEVNRFLNGDNDPDLLKHLEPVKKELLVARELARILRDWRKKRGSVMDISSREVK 423
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY------RG 407
I ++ ++++ +++ + + ++ E MI E IA FN +P+ +
Sbjct: 424 ILF---DEKGRVVDILPQERGESEI-MIEEFMIKANETIAEI--FNTQDIPFVYRIHEKP 477
Query: 408 QPQSNIDVSAFAH-------LPEG----------------PVRSS---AIVKIMRAAAID 441
P+S I + + +P+ P+ SS +V+ M+ A
Sbjct: 478 DPESIIQLKHYLEAIGMKLRIPKNIHPKVLQEILEKTKDHPLHSSIERILVRSMKRAVYS 537
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLE 492
R + H L Y FTSPIRRY DL+ H +K + E FS +++
Sbjct: 538 ERN-IGHFGLASQAYTHFTSPIRRYPDLIVHRLLKKII--EKGHFSPEEID 585
>gi|434383069|ref|YP_006704852.1| exoribonuclease R [Brachyspira pilosicoli WesB]
gi|404431718|emb|CCG57764.1| exoribonuclease R [Brachyspira pilosicoli WesB]
Length = 576
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 148/322 (45%), Gaps = 34/322 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL LK ID + + +LDDA S R+ D KVY+H++D + +IEP S D +A K
Sbjct: 131 DRVDLRSLKTVTIDSEHSKDLDDAFSIERVDDN-YKVYVHISDVSHFIEPNSPLDIEAKK 189
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG S +L Y MFPE L+ E +SL + +T+ V+ DG+I + V SII
Sbjct: 190 RGNSTYLIDKVYNMFPEILSNEIISLNEKVDRFTLTLICVIDKDGNILQSDVVKSIINSD 249
Query: 304 YMLTYESATELLHLNLEEEAEL-KILSEAAALR-LQWRLQQGAIDTATLETRIKVANPED 361
L+Y A ++++ +E L ++++ A ++ + + + +D + I + +
Sbjct: 250 KKLSYNYAEDIINKKANDEDWLMELINNALEVKNILHKKRSKGVDFENDDINIVLDDNGV 309
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSFNNLALPYRGQP----------- 409
P I Y E++ + +M ++ +M+L IA + + Y G P
Sbjct: 310 P---IEFYAEEKKE-SMLIIESLMLLANSEIAKKLKDYEGVIYRYHGAPDNYRFNNFKIL 365
Query: 410 ------------QSNIDVSAFAHLPEGPVRSSAIVKI-MRAAAIDFRKPVR--HGVLGLP 454
+ N D+ F +G + + MR+ + H LG
Sbjct: 366 AHNKGYELKKLDEDNYDLIDFLEKIKGKSEEKLLTGVLMRSMTPSSYSVINKSHFGLGFD 425
Query: 455 GYVQFTSPIRRYMDLLAHYQVK 476
Y FTSPIRRY+DL H VK
Sbjct: 426 YYTYFTSPIRRYVDLTIHRIVK 447
>gi|423527067|ref|ZP_17503512.1| ribonuclease R [Bacillus cereus HuB1-1]
gi|402454230|gb|EJV86023.1| ribonuclease R [Bacillus cereus HuB1-1]
Length = 812
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 50/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRNQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A D + H L Y FTSPIRRY D + H ++ +
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|423386606|ref|ZP_17363861.1| ribonuclease R [Bacillus cereus BAG1X1-2]
gi|401632027|gb|EJS49817.1| ribonuclease R [Bacillus cereus BAG1X1-2]
Length = 810
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 50/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRNQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A D + H L Y FTSPIRRY D + H ++ +
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|228988352|ref|ZP_04148444.1| Ribonuclease R [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228771333|gb|EEM19807.1| Ribonuclease R [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 808
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 50/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A D + + H L Y FTSPIRRY D + H ++ +
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|399155740|ref|ZP_10755807.1| exoribonuclease R [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 754
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 158/348 (45%), Gaps = 42/348 (12%)
Query: 171 ISNFLQKAE-DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQD--GRIKVYIHVADP 227
++NF Q+ D R+DL L ID A + DDA+ + +D G ++++ +AD
Sbjct: 270 VNNFSQQVRFDASSGRRDLRDLDFVTIDGKSARDFDDAVCVIPDKDSSGGFRLFVAIADV 329
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
Y++P D++A+ RGTSV+ PT PM PE L+ SLR +T + + ++
Sbjct: 330 AHYVQPEDPVDQEALLRGTSVYFPTHAVPMLPEGLSNNLCSLRPQVNRLTLTCEMRITAE 389
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLH------LNLEEEAELKILSEAAALRLQWRLQ 341
G + YS+ S+I+ L YE +LL + E + ++ + + A + + R+Q
Sbjct: 390 GEVVGYSLSESVIRSRARLIYEDVADLLEGRTSSIRDPELQTNIRKMHKLAMILERKRIQ 449
Query: 342 QGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL 401
+GA+ + E +V + + + + ++ Q+ AM+L+ + M+ E +A + N +
Sbjct: 450 RGAVQFSFAE---EVFEFDADQQMTGVGLKYQSS-AMKLIEQFMLEANETVARHCVKNKM 505
Query: 402 ALPYR-----------------------GQPQSNIDVSAF----AHLPEGPVRSSAIVKI 434
YR P+ D F + E P V +
Sbjct: 506 PALYRVHERPDMRKLQKLKQTFSRFGVRTSPEKLSDPQLFNTVIEQIQELPNFDQLQVLL 565
Query: 435 MRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACLR 480
+R A+ + + G GL Y FTSPIRRY DL+ H +K L+
Sbjct: 566 LRTMALAVYQTINKGHFGLAAEYYAHFTSPIRRYPDLVVHRAIKDMLQ 613
>gi|331701669|ref|YP_004398628.1| ribonuclease R [Lactobacillus buchneri NRRL B-30929]
gi|329129012|gb|AEB73565.1| ribonuclease R [Lactobacillus buchneri NRRL B-30929]
Length = 775
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 166/366 (45%), Gaps = 48/366 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R+D+T + ID + + +LDDA++A +L +G + +H+AD + Y++PGS DK+A
Sbjct: 254 IGREDITDQDLVTIDGESSKDLDDAVTAWKLPNGNYHLGVHIADVSHYVQPGSAIDKEAF 313
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSV+L PM P +L+ SL +GE+ ++ + + G+I ++ + S+++
Sbjct: 314 RRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCEMEIDPSGNIIKHRIHPSLMRS 373
Query: 303 TYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRI 354
T +TY + +L + ++ + + + E + + R +GAID E I
Sbjct: 374 TARMTYTAVNNILESHDQKTMDRYDKLVPMFETMGELHKILYKHRKARGAIDFDDNEAEI 433
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
V + P I L V A+ R++ M+ E +A + ++ YR + D
Sbjct: 434 IVDDKGHPID-IKLRVRGTAE---RMIESFMLAANETVAKHYYEKHVPFIYRVHETPDAD 489
Query: 415 --------VSAF-----------------------AHLPEGPVRSSAIVKIMRAAAIDFR 443
++AF A PE + S +++ ++ A
Sbjct: 490 RIRTFFETLTAFGINVKGDPEHVTPKTLQNVLKKVAGKPEEMMVSVMLLRSLKQARY-AD 548
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDL----LAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ + H L P Y FTSPIRRY D L HY + E+ A L+ +A+ +
Sbjct: 549 QSLGHFGLAAPFYTHFTSPIRRYPDTMVHRLIHYYQDNGINDETKKRYANVLDEIATTTS 608
Query: 500 MQTRIA 505
R A
Sbjct: 609 QYERRA 614
>gi|406027220|ref|YP_006726052.1| ribonuclease R [Lactobacillus buchneri CD034]
gi|405125709|gb|AFS00470.1| ribonuclease R [Lactobacillus buchneri CD034]
Length = 776
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 166/366 (45%), Gaps = 48/366 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R+D+T + ID + + +LDDA++A +L +G + +H+AD + Y++PGS DK+A
Sbjct: 254 IGREDITDQDLVTIDGESSKDLDDAVTAWKLPNGNYHLGVHIADVSHYVQPGSAIDKEAF 313
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSV+L PM P +L+ SL +GE+ ++ + + G+I ++ + S+++
Sbjct: 314 RRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCEMEIDPSGNIIKHRIHPSLMRS 373
Query: 303 TYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRI 354
T +TY + +L + ++ + + + E + + R +GAID E I
Sbjct: 374 TARMTYTAVNNILESHDQKTMDRYDKLVPMFETMGELHKILYKHRKARGAIDFDDNEAEI 433
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
V + P I L V A+ R++ M+ E +A + ++ YR + D
Sbjct: 434 IVDDKGHPID-IKLRVRGTAE---RMIESFMLAANETVAKHYYEKHVPFIYRVHETPDAD 489
Query: 415 --------VSAF-----------------------AHLPEGPVRSSAIVKIMRAAAIDFR 443
++AF A PE + S +++ ++ A
Sbjct: 490 RIRTFFETLTAFGINVKGDPEHVTPKTLQNVLKKVAGKPEEMMVSVMLLRSLKQARY-AD 548
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDL----LAHYQVKACLRGESPPFSAGQLEGMASIVN 499
+ + H L P Y FTSPIRRY D L HY + E+ A L+ +A+ +
Sbjct: 549 QSLGHFGLAAPFYTHFTSPIRRYPDTMVHRLIHYYQDNGINDETKKRYANVLDEIATTTS 608
Query: 500 MQTRIA 505
R A
Sbjct: 609 QYERRA 614
>gi|222098566|ref|YP_002532624.1| ribonuclease r [Bacillus cereus Q1]
gi|221242625|gb|ACM15335.1| ribonuclease R [Bacillus cereus Q1]
Length = 791
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 160/341 (46%), Gaps = 44/341 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 230 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 289
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 290 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 349
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 350 SVIKTTERMTYADVRSILEDEDEELMKRYEPLVPMFKEMGQLAKILREKRMRRGAIDFDF 409
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 410 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 465
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 466 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA 525
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
D + + H L Y FTSPIRRY D + H ++ +
Sbjct: 526 RYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 565
>gi|423573223|ref|ZP_17549342.1| ribonuclease R [Bacillus cereus MSX-D12]
gi|401215229|gb|EJR21947.1| ribonuclease R [Bacillus cereus MSX-D12]
Length = 806
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 50/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A D + + H L Y FTSPIRRY D + H ++ +
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|169834018|ref|YP_001694420.1| ribonuclease R [Streptococcus pneumoniae Hungary19A-6]
gi|168996520|gb|ACA37132.1| ribonuclease R [Streptococcus pneumoniae Hungary19A-6]
Length = 784
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 160/340 (47%), Gaps = 49/340 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERIIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQVK 476
HG GL Y FTSPIRRY DLL H ++
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIR 574
>gi|217962598|ref|YP_002341170.1| ribonuclease R [Bacillus cereus AH187]
gi|229141851|ref|ZP_04270378.1| Ribonuclease R [Bacillus cereus BDRD-ST26]
gi|375287121|ref|YP_005107560.1| ribonuclease R [Bacillus cereus NC7401]
gi|423355607|ref|ZP_17333231.1| ribonuclease R [Bacillus cereus IS075]
gi|423572277|ref|ZP_17548487.1| ribonuclease R [Bacillus cereus MSX-A12]
gi|217066634|gb|ACJ80884.1| ribonuclease R [Bacillus cereus AH187]
gi|228641607|gb|EEK97911.1| Ribonuclease R [Bacillus cereus BDRD-ST26]
gi|358355648|dbj|BAL20820.1| ribonuclease R [Bacillus cereus NC7401]
gi|401082670|gb|EJP90936.1| ribonuclease R [Bacillus cereus IS075]
gi|401198089|gb|EJR05011.1| ribonuclease R [Bacillus cereus MSX-A12]
Length = 806
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 50/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELNKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A D + + H L Y FTSPIRRY D + H ++ +
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|118480167|ref|YP_897318.1| ribonuclease R [Bacillus thuringiensis str. Al Hakam]
gi|196045743|ref|ZP_03112973.1| ribonuclease R [Bacillus cereus 03BB108]
gi|118419392|gb|ABK87811.1| RNAse R [Bacillus thuringiensis str. Al Hakam]
gi|196023574|gb|EDX62251.1| ribonuclease R [Bacillus cereus 03BB108]
Length = 806
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 50/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A D + + H L Y FTSPIRRY D + H ++ +
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
>gi|206976639|ref|ZP_03237544.1| ribonuclease R [Bacillus cereus H3081.97]
gi|206745125|gb|EDZ56527.1| ribonuclease R [Bacillus cereus H3081.97]
Length = 806
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 50/344 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELNKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ A D + + H L Y FTSPIRRY D + H ++ +
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYI 580
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,603,765,363
Number of Sequences: 23463169
Number of extensions: 342866842
Number of successful extensions: 852262
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6172
Number of HSP's successfully gapped in prelim test: 318
Number of HSP's that attempted gapping in prelim test: 835487
Number of HSP's gapped (non-prelim): 12153
length of query: 589
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 441
effective length of database: 8,886,646,355
effective search space: 3919011042555
effective search space used: 3919011042555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)