BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007798
(589 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NQJ6|RNR1_ARATH Ribonuclease II, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=RNR1 PE=1 SV=1
Length = 803
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/414 (77%), Positives = 370/414 (89%), Gaps = 1/414 (0%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+ ++ + + R DLTHLKVYAIDVDEADELDDALSA RLQDGRIK++IHVADP +Y+ PGS
Sbjct: 390 ESSDIDAVRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGS 449
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D++A +RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG I EYSV
Sbjct: 450 KVDREARRRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCITEYSV 509
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
DNSII+PTYMLTYESA+ELLHLNLEEEAELK+LSEAA +R QWR +QGA+DT TLETRIK
Sbjct: 510 DNSIIRPTYMLTYESASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETRIK 569
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
V NPEDPEP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNIDV
Sbjct: 570 VVNPEDPEPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNIDV 629
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
SAFAHLPEGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHYQ+
Sbjct: 630 SAFAHLPEGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHYQI 689
Query: 476 KACLR-GESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALI 534
KA LR G++ PFSAG+LEG+A+ VNMQ+++ R+LSNT LRYW+IEFLRRQ K ++Y AL+
Sbjct: 690 KAFLRGGDNFPFSAGELEGIAASVNMQSKVVRKLSNTGLRYWVIEFLRRQEKGKKYTALV 749
Query: 535 LRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
LRF+KDR A+LLLVEVG QA AWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 750 LRFVKDRIASLLLVEVGFQATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 803
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 135/194 (69%), Gaps = 15/194 (7%)
Query: 1 MMAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQ 57
MM+VRA+N CS+ R SA PP+ F+ + R+ LR S L P R++R+
Sbjct: 1 MMSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLR-EFSKLRLNFPLIRADRR 57
Query: 58 FLNRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQ 108
FL S + SCS +HSLV+SV +EL +I +R +RV A VKV S GE+LEDKL NQ
Sbjct: 58 FLGNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQ 117
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
L+ GLLLEFKKD+DRVLLAV R DGKKNWMV+DQNG SCSIKPQQ+T++VP V FDH
Sbjct: 118 ELEAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQNGVSCSIKPQQITYIVPNVYNFDH 177
Query: 169 KDISNFLQKAEDNL 182
+++FLQ+A+DNL
Sbjct: 178 TGLTDFLQRAQDNL 191
>sp|P73177|RN2H_SYNY3 Uncharacterized ribonuclease sll1290 OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=sll1290 PE=3 SV=1
Length = 666
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/408 (39%), Positives = 234/408 (57%), Gaps = 10/408 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT LK Y ID + E+DD LS L DG +++IHVADPT+ + P D +A K
Sbjct: 262 ERFDLTTLKTYTIDDESTSEIDDGLSVETLADGGHRLWIHVADPTRLLSPNDELDLEARK 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP +LA MSL QG+ C A++ V L G++ ++++ S +KPT
Sbjct: 322 RSTSLYLPTGMISMFPPELATGPMSLLQGQRCVALSFGVTLDEVGAVRDFTIAPSWVKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E EL +L+EAA R QWR QGAI E IKV E+
Sbjct: 382 YRLTYEDVDEMLVLKIQGEPELPLLAEAAKKRAQWRKSQGAITIKMPEAIIKVNADEE-- 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
+ +Y+++ + + +LV+EMMIL GE + + + +P+RGQPQ + LP
Sbjct: 440 --VQIYLQETSV-SRQLVAEMMILAGEVAGRFCQEHGIPVPFRGQPQPELPSDEELLSLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGE 482
GPVR A+ + M + + P RH LGL Y Q TSPIRRY DL+ H+Q+KA LRGE
Sbjct: 497 PGPVRECAVRRCMPRSEVGI-TPSRHASLGLDLYSQATSPIRRYTDLITHFQMKAYLRGE 555
Query: 483 SPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIK--D 540
PFS Q++ + V ++ A + + RYW +EFLRR E ++ ++LR+++ D
Sbjct: 556 PLPFSGEQVQEILYSVMPSSKEATLVERQTNRYWSLEFLRRNINE-VWQGVMLRWLREDD 614
Query: 541 RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 588
+LL E+GL+ GD + +KV A P D I +E++
Sbjct: 615 GLGLILLEELGLELPHRFDRPISPGDRLSLKVSNADPHRDEIRFRELL 662
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAV RPDGKK+W+V DQ G S +KPQ+V + +PG +
Sbjct: 1 MEKGQLIEFRHQGER-RLAVVDRPDGKKDWVVIDQQGQSHKLKPQRVEYEIPG-GPYTVD 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
D+ +FL + + L D + L+V + + ++E + + A A+ L
Sbjct: 59 DLPSFLGEVDQYL----DPSSLEVAWELLIEEGESITPADLALLL 99
>sp|Q9PK00|RNR_CHLMU Ribonuclease R OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnr
PE=3 SV=1
Length = 692
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 178/404 (44%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDQEAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ L IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKLAHPISKTILEMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P + VE++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVAL----VENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 R-GQPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + ++ F A P P+ S V+ M
Sbjct: 423 RIHEPPNEENLLLFRETAKAMGFTITQTPTQEPDYQYLLQETSAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E G LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----GHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q R+A + N ++ +FL QP Y+A I+
Sbjct: 537 RACSSQERVAAKAEGAFINIKKARFLKKFLDEQPATL-YKAFII 579
>sp|O84402|RNR_CHLTR Ribonuclease R OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rnr
PE=3 SV=1
Length = 694
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 175/404 (43%), Gaps = 48/404 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMA 495
+ A+ +G L L Y FTSPIRRY+DL+ H + L E LE +
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEE-----EHLEQIV 536
Query: 496 SIVNMQTRIARR----LSNTSLRYWIIEFLRRQPKERQYRALIL 535
+ Q RIA + N ++ +F+ QP Y+A I+
Sbjct: 537 RACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATL-YKAFII 579
>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=3 SV=1
Length = 779
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 159/342 (46%), Gaps = 48/342 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVKACL 479
D P G GL Y FTSPIRRY DL+ H ++ L
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYL 576
>sp|Q9Z848|RNR_CHLPN Ribonuclease R OS=Chlamydia pneumoniae GN=rnr PE=3 SV=1
Length = 676
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 111/407 (27%), Positives = 184/407 (45%), Gaps = 54/407 (13%)
Query: 169 KDISNFLQKAEDNLLN-RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S F QK +L+ RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 190 EEASLFSQKHITQVLHSRKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNYILGVHIADV 249
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S DK+A KR S + P PM P L+ SL+ AV+V +
Sbjct: 250 SHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKS 309
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW---RLQQGA 344
G +++Y + S+I+ Y +TY+ ++ KIL+E A L ++ R ++G
Sbjct: 310 GHLSDYQIFRSVIRSKYRMTYDEVDNIIEKKHSHPLS-KILNEMATLSKKFSDIREERGC 368
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I + + N ++P +I E+ + +L+ E M+ E +A + S ++LP
Sbjct: 369 IRFVLPSVTMSLDNLQEPVALI----ENHQTFSHKLIEEFMLKANEVVAYHISHQGVSLP 424
Query: 405 YRG-QPQSNIDVSAFAHL-----------------------------PEGPVRSSAIVKI 434
+R +P ++ ++ AF L P V S V+
Sbjct: 425 FRSHEPPNDENLLAFQELAKNMGFDITFTPTQEPDYQYLLQTTSAGHPLEQVLHSQFVRS 484
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQ--LE 492
M+ A+ +G L L Y FTSPIRRY+DL+ H R P S Q LE
Sbjct: 485 MKTASYSTENKGHYG-LKLDYYTHFTSPIRRYIDLIVH-------RLLFNPLSIDQTHLE 536
Query: 493 GMASIVNMQTRIARRLSNT--SLRY--WIIEFLRRQPKERQYRALIL 535
+ + + R++ + N+ +L+ +I +FL+ QPK Y A I+
Sbjct: 537 IIVRACSTKERVSAKAENSFENLKKTRFINKFLQEQPKT-TYHAYII 582
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr1 PE=3 SV=1
Length = 817
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 163/346 (47%), Gaps = 47/346 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 253 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RINRLTQSCVMEISPEGRVINYQIS 370
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE A++ KI+ E + R ++GAID T
Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
G L Y FTSPIRRY DLL H ++ G++P
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVHRLIREIGEGKTP 591
>sp|O67834|RNR_AQUAE Ribonuclease R OS=Aquifex aeolicus (strain VF5) GN=rnr PE=3 SV=1
Length = 705
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 162/378 (42%), Gaps = 46/378 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL + ID ++A + DDA++ +G K+Y+H+AD + Y+ G+ +DK+A KR
Sbjct: 240 RRDLREQLCFTIDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKR 299
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G + + P M PEKL+ + SLR E A TV +V G++ Y + S+I+
Sbjct: 300 GFTYYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNLKAYDIYESVIRSKA 359
Query: 305 MLTYESATELL---------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY A L+ NL E L+++ + + R + G+ID E +
Sbjct: 360 RLTYNEALALIVGDPALEKKFPNLVE--PLRMMETLYRILSRKRWEMGSIDFDLPEAEVI 417
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-GQPQSNID 414
V +P I + A R++ MI E +A + YR +P
Sbjct: 418 VDEYGEPTAIYPY----ERHVAHRIIEHFMISANETVALHLEHAGYPCLYRVHEPPDEEK 473
Query: 415 VSAFAHLPEG------------PVRSSAIVK--------------IMRAAAIDFRKP--V 446
V + EG P I++ +RA A P V
Sbjct: 474 VENLLEILEGLGYKVKRPHEYTPKFFQKIIEDFEGRPEENLVRFLTLRAMARAKYSPHNV 533
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPF--SAGQLEGMASIVNMQTRI 504
H L L Y FTSPIRRY D++ H +K LRGE + + LE + ++ Q RI
Sbjct: 534 GHFGLALEHYAHFTSPIRRYPDIIVHRLLKKALRGEEIDYEKTLAYLEEAGNHLSKQERI 593
Query: 505 ARRLSNTSLRYWIIEFLR 522
A ++ Y +++
Sbjct: 594 ADEAEMEAIDYLKARYMK 611
>sp|Q9WZI1|RNR_THEMA Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rnr PE=3 SV=1
Length = 710
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 169/354 (47%), Gaps = 41/354 (11%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ RKDL + ID ++A + DDA+S +L +G + +H+AD + Y++ GS D++
Sbjct: 242 DLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQE 301
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A KRGTSV+L PM P +L+ SL +G+ ++V + + DG + Y V S+I
Sbjct: 302 AFKRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVI 361
Query: 301 KPTYMLTYESATELLH--LNLEEEAELKIL----SEAAALRLQWRLQQGAI-DTATLETR 353
K + YE E L +++E K L E A + + R ++GAI D + E
Sbjct: 362 KSKKRMIYERVNEFLEDPSSMKEYEPFKDLIYNAVELAEILREARRKRGAILDIESDE-- 419
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
+KV E+ + ++++ V + A +L+ E MI E +A L YR + +
Sbjct: 420 VKVILDENGQ-VVDI-VPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDP 477
Query: 414 DV--------------SAFAH-------------LPEGPVRSSAIVKIMRAAAIDFRKPV 446
+ + F+H + + P+RSS ++R+ V
Sbjct: 478 ETIFQLKNYLEAMGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAV 537
Query: 447 RHGVLGLP--GYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
G GL Y FTSPIRRY DL+ H +K L ++ F+ Q+E + ++
Sbjct: 538 NIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLE-QNGYFTPEQIEKFSKVL 590
>sp|C3LW69|RNB_VIBCM Exoribonuclease 2 OS=Vibrio cholerae serotype O1 (strain M66-2)
GN=rnb PE=3 SV=1
Length = 678
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>sp|Q9KLE1|RNB_VIBCH Exoribonuclease 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=rnb PE=3 SV=1
Length = 678
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 186/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
WR + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>sp|Q7MEL4|RNB_VIBVY Exoribonuclease 2 OS=Vibrio vulnificus (strain YJ016) GN=rnb PE=3
SV=2
Length = 664
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 167/380 (43%), Gaps = 51/380 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A I P VT + + I ++ Q +D L R D+TH+ ID + ++DD
Sbjct: 156 ADDKIAPWWVTLAENDLPNSEPAGIDDW-QIKDDADLERIDMTHIPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + G ++ I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAKKNDAGDFELTIAIADPTAYITPDDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEE--- 322
SL +GE+ A+ +V + DG I + + IK L Y++ ++ L E+
Sbjct: 275 CSLIEGEIRPALCCTVTVSKDGVIGDDIQFFAANIKSHARLAYDNVSDWLETGSCEKWQP 334
Query: 323 -----AELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
A ++ L E + R +WR + + + R +++ D ++ ++ D A
Sbjct: 335 SEEIAAIVRDLYEFSQARAEWREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LC-GEAIATY---GSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSA 430
RLV E MI +C G+ + + G FN A +P+ DV + PEG + +A
Sbjct: 391 NRLVEESMITANICAGKTLQAHFGTGVFNCHA---GFKPEKIADVVELVN-PEGTLEFTA 446
Query: 431 IVKIMRAAAIDFRK--------------------------PVRHGVLGLPGYVQFTSPIR 464
R R+ P+ H +GL Y +TSPIR
Sbjct: 447 ESIATREGFAALRRWLSKQETTYLDNRIRKFQTYSEVSNQPLPHYAMGLDIYATWTSPIR 506
Query: 465 RYMDLLAHYQVKACLRGESP 484
+Y D++ H +KA + + P
Sbjct: 507 KYGDMINHRMLKALILNKEP 526
>sp|Q8D7K6|RNB_VIBVU Exoribonuclease 2 OS=Vibrio vulnificus (strain CMCP6) GN=rnb PE=3
SV=1
Length = 664
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 167/380 (43%), Gaps = 51/380 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A I P VT + + I ++ Q +D L R D+TH+ ID + ++DD
Sbjct: 156 ADDKIAPWWVTLAENDLPNSEPAGIDDW-QIKDDADLERIDMTHIPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + G ++ I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAKKNDAGDFELTIAIADPTAYITPDDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEE--- 322
SL +GE+ A+ +V + DG I + + IK L Y++ ++ L E+
Sbjct: 275 CSLIEGEIRPALCCTVTVSKDGVIGDDIQFFAANIKSHARLAYDNVSDWLETGSCEKWQP 334
Query: 323 -----AELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
A ++ L E + R +WR + + + R +++ D ++ ++ D A
Sbjct: 335 SEEIAAIVRDLYEFSQARAEWREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LC-GEAIATY---GSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSA 430
RLV E MI +C G+ + + G FN A +P+ DV + PEG + +A
Sbjct: 391 NRLVEESMITANICAGKTLQGHFGTGVFNCHA---GFKPEKIADVVELVN-PEGTLEFTA 446
Query: 431 IVKIMRAAAIDFRK--------------------------PVRHGVLGLPGYVQFTSPIR 464
R R+ P+ H +GL Y +TSPIR
Sbjct: 447 ESIATREGFAALRRWLSKQETTYLDNRIRKFQTYSEVSNQPLPHYAMGLDIYATWTSPIR 506
Query: 465 RYMDLLAHYQVKACLRGESP 484
+Y D++ H +KA + + P
Sbjct: 507 KYGDMINHRMLKALILNKEP 526
>sp|A5F0G1|RNB_VIBC3 Exoribonuclease 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541
/ Ogawa 395 / O395) GN=rnb PE=3 SV=1
Length = 678
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 115/419 (27%), Positives = 185/419 (44%), Gaps = 53/419 (12%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+KGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRK 294
Query: 287 DGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
DG I + + N IK L Y+ ++ L E+ + ++ L + R
Sbjct: 295 DGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQAR 352
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEA 391
W + + R +++ D ++ ++ D A RLV E MI +C G+
Sbjct: 353 ANWCETHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGKT 408
Query: 392 IAT---YGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEGP 425
+ T +G FN A + G P ++ + V FA L E
Sbjct: 409 LQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETS 468
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 469 YLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
>sp|Q1MTN7|RPM1_SCHPO Exoribonuclease II, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpm1 PE=2 SV=2
Length = 957
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 181/424 (42%), Gaps = 60/424 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL HLK +A D E+DDA+S L ++IHVA+PT ++ S A +
Sbjct: 503 RVDLRHLKAFAFDSSSTKEIDDAISVEELGMSNSWLHIHVANPTSTVDIRSPLGTFAERN 562
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCN-AVTVSVVLHSDGSIAEYSVDNSIIKPT 303
+++ P M P + + SL A+T S + +G I +Y V S I
Sbjct: 563 FQTIYHPNKIVYMLPLNITQKYWSLDSSSTAQRALTFSAKISKNGDILDYKVRPSFISSV 622
Query: 304 YMLTYESATELLHLN-----------LEEEAE----------LKI--LSEAAALRLQWRL 340
T + + LH N ++EE + L+I LS+ A RL
Sbjct: 623 IKYTPQQLDKALHSNRSIAKDIVSGPVDEETKGVSNDHMKDILRIYELSKQACFS---RL 679
Query: 341 QQGAIDTATLETRIKVANPEDPE--------------PIINLYVEDQADPAMRLVSEMMI 386
Q+ A A +++ P P I+L V + A ++SE MI
Sbjct: 680 QKFAFVIAQPTPTVELLPNNVPYNLGDLNHPVYWSSFPTISLNVSEGYSLAESVISECMI 739
Query: 387 LCGEAIATYGSFNNLALPYRGQPQSNID---VSAFAHLPEGPVRSS----------AIVK 433
L G + + + L +RGQP +D AF L RSS +++
Sbjct: 740 LAGRVSSLFFQEHKLPGIFRGQPYPIMDGVRRKAFETLLSN--RSSWGLVETKYSLSVMP 797
Query: 434 IMRAAAIDFRKPVRHGVLGLP-GYVQFTSPIRRYMDLLAHYQVKAC-LRGESPPFSAGQL 491
+ ++ + PV H LGL GY+Q TSP+RR+ D H+Q+++ L+ G L
Sbjct: 798 LFESSHLA-STPVSHFSLGLKDGYIQSTSPLRRFTDFFTHHQIQSVLLKTPKNTIPDGIL 856
Query: 492 EGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPK-ERQYRALILRFIKDRTAALLLVEV 550
G ++ N + + + + R+W ++++ R PK ++ L + T ++L E+
Sbjct: 857 RGKLNLYNQKEKSIKTIGRYINRFWALKYIERLPKVQKNIYHGYLMVSELSTPQVMLEEL 916
Query: 551 GLQA 554
G++A
Sbjct: 917 GVKA 920
>sp|B7VSB8|RNB_VIBSL Exoribonuclease 2 OS=Vibrio splendidus (strain LGP32) GN=rnb PE=3
SV=1
Length = 668
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 109/414 (26%), Positives = 179/414 (43%), Gaps = 47/414 (11%)
Query: 113 GLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQN----GASCSIKPQQVTFVVPGVEKFDH 168
GL E K+ D V+ + Q P N + + A I P VT + +
Sbjct: 118 GLNPETLKEGDWVVAHIVQHPLKGDNGFLAQISEKITDADDKIAPWWVTLAQNDLPNSEP 177
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
+ I ++ Q +D L R D+TH+ ID + ++DDAL A + ++G ++ I +ADPT
Sbjct: 178 EGIDDW-QIKDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIADPT 236
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
YI P DK A +RG +++LP PM P LA SL + EV A+ +V + DG
Sbjct: 237 AYISPDDAMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSKDG 296
Query: 289 SIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQWR 339
I + + + IK L Y+ ++ L E+ A + L + A R WR
Sbjct: 297 VIGDDINFFAANIKSHARLAYDHVSDWLETGASEKWQPSEEIAAIVSDLHQFAQARSAWR 356
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAIA--- 393
+ + R +++ D ++ ++ D A +LV E MI +C +
Sbjct: 357 SANAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANKLVEESMISANICAGRVLKES 412
Query: 394 -TYGSFN--------------NLALPYRGQPQSN---IDVSAFAHLPE--GPVRSSAI-- 431
G FN L P P + + + FA L G + +S
Sbjct: 413 FNQGVFNCHSGFKAEKLTDVLELVNPEAETPFTEEQIVSLEGFATLRRWLGSLDNSYYDN 472
Query: 432 -VKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
++ +A + +P H +GL Y +TSPIR+Y D++ H +KA + ++P
Sbjct: 473 RIRKFQAYSEISNEPAPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILRKTP 526
>sp|Q87IJ9|RNB_VIBPA Exoribonuclease 2 OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rnb PE=3 SV=1
Length = 668
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 169/378 (44%), Gaps = 47/378 (12%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A I P VT + + I N+ K +D L R ++TH+ ID + ++DD
Sbjct: 156 ADDKIAPWWVTLAQNDLPNSEPAGIENWELK-DDADLERIEMTHVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + + G ++ I +ADPT YI P DK A +RG +++LP PM P LA
Sbjct: 215 ALYAKKTESGDFELTIAIADPTAYITPEDEMDKVARERGYTIYLPGRNIPMLPRDLADNL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELLHLN------- 318
SL +GE+ A+ +V + DG I + + IK L Y+ ++ L
Sbjct: 275 CSLIEGEIRPAICCTVTVSKDGVIGDDIKFFAANIKSHARLAYDHVSDWLENGNSDAWQP 334
Query: 319 LEEEAEL-KILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
EE A + + L E + R +WR + + + R +++ D +I ++ D A
Sbjct: 335 SEEIATIVRDLYEFSLARAEWREKNAVVFPDRPDYRFELSEDND---VIAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LCG-----EAIATYGSFNNLA--LPYRGQ-------PQSNIDVSA--F 418
RLV E MI +C E T G FN A P + + P+ ++ +A
Sbjct: 391 NRLVEESMITANICAGRTLREKFET-GVFNTHAGLKPEKIEEVVQLVNPEGTLEFTAESI 449
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRY 466
A L EG + + + +D R +P+ H +GL Y +TSPIR+Y
Sbjct: 450 ATL-EGFAALRRWLAVQETSYLDNRIRKFQAYSEVGNQPLPHYAMGLDIYATWTSPIRKY 508
Query: 467 MDLLAHYQVKACLRGESP 484
D++ H +KA + + P
Sbjct: 509 GDMINHRMLKAVILDKEP 526
>sp|P39112|DSS1_YEAST Exoribonuclease II, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DSS1 PE=1 SV=2
Length = 969
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 100/418 (23%), Positives = 171/418 (40%), Gaps = 59/418 (14%)
Query: 166 FDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRL-QDGRIKVYIHV 224
+D +I K +R D L+V+ ID + A E+DD +S +DG +YIH+
Sbjct: 503 YDLTNIEELQWKKSGTDDDRYDFGDLRVFCIDSETAHEIDDGVSVKNYGRDGLYTLYIHI 562
Query: 225 ADPTKYIEPGSLSDKD---------AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVC 275
ADPT + D + A+KR + +LP PM P+ + +QG+
Sbjct: 563 ADPTSMFPESTNVDIEGISTDILNVALKRSFTTYLPDTVVPMLPQSICHLSDLGKQGQRT 622
Query: 276 NAVTVSVVLH-----SDGSIA----EYSVDNSIIKPTYMLTYESATELLHLNLEE----E 322
++ SV + S SI + + I+ TYE +L E +
Sbjct: 623 KTISFSVDVKITSKCSGKSIEIMYDSFKIRKGIVSNFPKATYEDVDRILGTPNSEASPVK 682
Query: 323 AELKILSEAAALRLQWRLQQ--GAIDTATLETRIKVANPEDPEPIINLYVEDQADP-AMR 379
+L+ LS + L + R++ I + + N + + + DQ + +
Sbjct: 683 KDLESLSMISKLLREQRIKNSNAVIFGEGFNKGLVMLNADSEGELTEVTFSDQEETLSTI 742
Query: 380 LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPV------------- 426
LVSEMMIL Y + N + +R + LP G V
Sbjct: 743 LVSEMMILANTLTGRYFAENKIGGVFR----------CYKQLPLGEVAQQQYDSMITSTK 792
Query: 427 -----RSSAIVKIMRAAAIDFR--KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL 479
+ IVK+ F +P RH ++G Y+ TSP+RR+ DL+ H Q+ L
Sbjct: 793 KGIFPKLKDIVKLSSLLNSSFYTGRPFRHEMIGAKQYLTVTSPLRRFPDLINHLQIHRHL 852
Query: 480 RGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPK---ERQYRALI 534
+ + F+ Q++ + + + I +R S S YW + +L++ K ER + ++
Sbjct: 853 QKKPLCFNQTQIDSLIWPIQSRADILKRASRNSSTYWTLNYLKKLTKLEPERTFDVMV 910
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 173/385 (44%), Gaps = 52/385 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKD + +ID ++DDAL A L +G +V +H+AD T +++P + D +A
Sbjct: 495 NRKDFRDKLICSIDPPGCQDIDDALHACVLPNGNYEVGVHIADVTHFVKPNTSMDSEAAS 554
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+L M P L + SLR A + + + +I + S+I
Sbjct: 555 RGTTVYLVDKRIDMLPMLLGTDLCSLRPYVERFAFSCIWEMDENANIIKVHFTKSVIASK 614
Query: 304 YMLTYESATELLHLNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
+Y A + ++ +++L + + + Q R+ +GA++ A+ E RI+ N E
Sbjct: 615 EAFSYADAQARIDDQKMQDPLTQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDN-E 673
Query: 361 DPEPI---INLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNNLALPYR--GQPQSNI 413
+P+ I +E + LV E M+L ++A Y +F A+ R P +N
Sbjct: 674 TSDPMDVEIKQLLETNS-----LVEEFMLLANISVAQKIYDAFPQTAVLRRHAAPPLTNF 728
Query: 414 D-------VSAFAHL-----------------PEGPVRSSAI----VKIMRAAAI----D 441
D V HL P+ P ++ + + M +A
Sbjct: 729 DSLQDILRVCKGMHLKCDTSKSLAKSLDECVDPKEPYFNTLLRILTTRCMLSAEYFCSGT 788
Query: 442 FRKP-VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES--PPFS-AGQLEGMASI 497
F P RH L P Y FTSPIRRY D+LAH Q+ A + E+ P S +L + +
Sbjct: 789 FAPPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETINPSLSDKSRLIEICNG 848
Query: 498 VNMQTRIARRLSNTSLRYWIIEFLR 522
+N + R+A+ S+ Y++ + L+
Sbjct: 849 INYRHRMAQMAGRASIEYYVGQALK 873
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 116/450 (25%), Positives = 191/450 (42%), Gaps = 87/450 (19%)
Query: 185 RKDL--THLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R+DL THL V++ID +++DDALS L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 RRDLRSTHL-VFSIDPKGCEDVDDALSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS---IAEYSVDNSI 299
R T+ +L Y M P L+ + SL G + VSV+ D + I + +I
Sbjct: 524 TRATTYYLADRRYDMLPSILSADLCSLLGG--VDRYAVSVMWELDKTSYEIKKVWYGRTI 581
Query: 300 IKPTYMLTYESATELLHLN---LEEEAELKILSE----AAALRLQW-------------- 338
I+ Y L YE+A ELL N +++ E K L E A L W
Sbjct: 582 IRSAYKLFYEAAQELLDGNFSIVDDIPEFKTLEEQNRQAKLEELVWAIGKLTDIARHIRA 641
Query: 339 -RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--Y 395
R + GA++ +E R+++ D + I+ + Q V+E MIL +A +
Sbjct: 642 KRDRCGALELEGVEVRVQL----DDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIW 697
Query: 396 GSFNNLALPYRGQP----------------------QSN---IDVSAFAHLPEGPVRSSA 430
SF + AL + P +SN D A+ P P+
Sbjct: 698 ESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPSDPL---- 753
Query: 431 IVKIMRAAAID-------------FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
+ K++R+ A + H L L Y FTSPIRRY D++ H + A
Sbjct: 754 VNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMA 813
Query: 478 CLRGESPP------FSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYR 531
+ + FS LE + +N + R A+R S + + + + E + R
Sbjct: 814 AISKDKKVEIKENLFSNKNLEELCRHINNRNRAAQRSQKQSTELFQCMYFKDRDPETEER 873
Query: 532 AL---ILRFIKDRTAALLLVEVGLQAAAWV 558
+ I+ I+ + + G++ AA++
Sbjct: 874 CVVDGIIYSIRTNGVLVFIPRFGIKGAAYL 903
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 196/450 (43%), Gaps = 87/450 (19%)
Query: 185 RKDL--THLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
RKDL THL V++ID +++DD LS L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 RKDLRTTHL-VFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS---IAEYSVDNSI 299
R T+ +L Y M P L+ + SL G + VSV+ D + I + +I
Sbjct: 524 TRATTYYLADRRYDMLPSILSADLCSLLGG--VDRYAVSVMWELDKTSYEIKKVWYGRTI 581
Query: 300 IKPTYMLTYESATELLHLN---LEEEAELKIL---SEAAAL-RLQW-------------- 338
I+ Y L YE+A ELL N +++ ELK L S+ A L L W
Sbjct: 582 IRSAYKLFYEAAQELLDGNFSIVDDIPELKALDKQSQQAKLEELVWAIGKLTDIARHIRA 641
Query: 339 -RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--Y 395
R + GA++ +E R+++ +D + I +L + Q V+E MIL +A +
Sbjct: 642 KRDRCGALELEGVEVRVQL---DDKKNIRDL-IPKQPLEVHETVAECMILANHWVAKKIW 697
Query: 396 GSFNNLALPYRGQP----------------------QSN---IDVSAFAHLPEGPVRSSA 430
SF + AL + P +SN D A+ P+ P+
Sbjct: 698 ESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPKDPL---- 753
Query: 431 IVKIMRAAAID-------------FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
+ K++R+ A + H L L Y FTSPIRRY D++ H + A
Sbjct: 754 VNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMA 813
Query: 478 CLRGESPP------FSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYR 531
+ + FS LE + +N + R A+R S + + + + E + R
Sbjct: 814 AISKDKKMEIKENLFSNKNLEELCRHINNRNRAAQRSQKQSTELFQCMYFKDRDAETEER 873
Query: 532 AL---ILRFIKDRTAALLLVEVGLQAAAWV 558
+ ++ I+ + + G++ AA++
Sbjct: 874 CIADGVIYSIRTNGVLVFIPRFGIKGAAYL 903
>sp|B4T6U4|RNB_SALNS Exoribonuclease 2 OS=Salmonella newport (strain SL254) GN=rnb PE=3
SV=1
Length = 644
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + E +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPENEDIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/421 (23%), Positives = 187/421 (44%), Gaps = 47/421 (11%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+++ NR+DL HL V ++D ++DDAL L +G ++V +H+AD + +I PG+
Sbjct: 460 TEEDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELSNGNLEVGVHIADVSHFIRPGNAL 519
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D+++ +RGT+V+L M PE L+ SLR A + ++ + I +
Sbjct: 520 DQESARRGTTVYLCEKRIDMVPELLSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTK 579
Query: 298 SIIKPTYMLTYESATELLH---LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
S+I LTY A + +N + L+ L++ A + + R+++GA+ ++ E R
Sbjct: 580 SVINSKASLTYAEAQMRIDSAAMNDDITTSLRGLNQLAKILKKGRIEKGALTLSSPEIRF 639
Query: 355 KV-ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLAL--PYRGQP 409
+ + DP I+L ++ + +V E M+L ++A + F+ AL + P
Sbjct: 640 HMDSETHDP---IDLQTKELRE-TNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPP 695
Query: 410 QSNIDVSAFAHLPEGPVRSSAIVKIM-----RAAAIDF---------------------- 442
SN D+ A + + K + RA + DF
Sbjct: 696 PSNYDILVKAAKSKNLQIKTDTAKSLADSLDRAESPDFPYLNTLLRILATRCMMQAVYFC 755
Query: 443 ---RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES--PPFS-AGQLEGMAS 496
H L P Y FTSPIRRY D++ H + + + P + +L +
Sbjct: 756 SGMDNDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAIGADCTYPELTDKHKLSDICK 815
Query: 497 IVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAA 556
+N + ++A+ S+ + F + + + A IL F++ +L+ + GL+
Sbjct: 816 NLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSE-EAYIL-FVRKNAIVVLIPKYGLEGTV 873
Query: 557 W 557
+
Sbjct: 874 F 874
>sp|Q8Z7C9|RNB_SALTI Exoribonuclease 2 OS=Salmonella typhi GN=rnb PE=3 SV=1
Length = 644
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + E +++L R +WR + +
Sbjct: 304 TIESKAKLVYDNVSDWLENNSTWQPENEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|B5BIE3|RNB_SALPK Exoribonuclease 2 OS=Salmonella paratyphi A (strain AKU_12601)
GN=rnb PE=3 SV=1
Length = 644
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + E +++L R +WR + +
Sbjct: 304 TIESKAKLVYDNVSDWLENNGTWQPENEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|Q5PCZ6|RNB_SALPA Exoribonuclease 2 OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=rnb PE=3 SV=1
Length = 644
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + E +++L R +WR + +
Sbjct: 304 TIESKAKLVYDNVSDWLENNGTWQPENEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|Q8ZP54|RNB_SALTY Exoribonuclease 2 OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=rnb PE=3 SV=1
Length = 644
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + + +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|A9MWU8|RNB_SALPB Exoribonuclease 2 OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=rnb PE=3 SV=1
Length = 644
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + + +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|B4TJI0|RNB_SALHS Exoribonuclease 2 OS=Salmonella heidelberg (strain SL476) GN=rnb
PE=3 SV=1
Length = 644
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIISADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + + +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|B5FU93|RNB_SALDC Exoribonuclease 2 OS=Salmonella dublin (strain CT_02021853) GN=rnb
PE=3 SV=1
Length = 644
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIISADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + + +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|B5R490|RNB_SALEP Exoribonuclease 2 OS=Salmonella enteritidis PT4 (strain P125109)
GN=rnb PE=3 SV=1
Length = 644
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIISADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + + +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAHQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|B5R9Y0|RNB_SALG2 Exoribonuclease 2 OS=Salmonella gallinarum (strain 287/91 / NCTC
13346) GN=rnb PE=3 SV=1
Length = 644
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIISADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + + +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|C0Q3R1|RNB_SALPC Exoribonuclease 2 OS=Salmonella paratyphi C (strain RKS4594) GN=rnb
PE=3 SV=1
Length = 644
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + + +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|Q57NV9|RNB_SALCH Exoribonuclease 2 OS=Salmonella choleraesuis (strain SC-B67) GN=rnb
PE=3 SV=1
Length = 644
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + + +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|B4TX11|RNB_SALSV Exoribonuclease 2 OS=Salmonella schwarzengrund (strain CVM19633)
GN=rnb PE=3 SV=1
Length = 644
Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + + +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|B5F571|RNB_SALA4 Exoribonuclease 2 OS=Salmonella agona (strain SL483) GN=rnb PE=3
SV=1
Length = 644
Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + + +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGEA 519
>sp|A0KFR1|RNB_AERHH Exoribonuclease 2 OS=Aeromonas hydrophila subsp. hydrophila (strain
ATCC 7966 / NCIB 9240) GN=rnb PE=3 SV=1
Length = 673
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 155/347 (44%), Gaps = 52/347 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ L R DLT + ID + ++DDAL+ +L +G ++ + +ADPT Y+ GS D
Sbjct: 185 EEEELPRTDLTATPFFTIDGAKTKDMDDALAIRKLDNG-WELLVAIADPTAYVAEGSELD 243
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS-VDN 297
K+A +R +V++P PM P L+ E SL++GE N + +++ DG + E +
Sbjct: 244 KEAAQRAFTVYMPGRNVPMIPRTLSDELCSLKEGEERNTLCARLLIAEDGLLLEETEFFA 303
Query: 298 SIIKPTYMLTYESATEL------LHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
+ I LTY+ ++ L ++ A+L ++ R+ WR + + +
Sbjct: 304 ARISSHARLTYDDVSDWAEHGKQLDIDAGVLAQLPLMKAMTEARIAWRTEHALVFPDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAI----ATYGSFNNLALP 404
++ E+ E ++ ++VE + A R+V E MI +C + YG FN
Sbjct: 364 YDFELG--ENGE-VLAIHVEPRR-IANRMVEESMIAANICAGRVLGKQVGYGIFNVHTGF 419
Query: 405 YRGQPQSNIDVSAFAHLP---------------------------EGPVRSSAIVKIMRA 437
ID+ A P +G +R +M A
Sbjct: 420 DEESLDGAIDLLKSAEAPFEKEEIASLSGFCALRRWIDNLDTRWLDGKIRRFQSYALMSA 479
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESP 484
+P H LGL Y +TSPIR+Y D++ H +KA + G++P
Sbjct: 480 ------EPGAHYGLGLDAYATWTSPIRKYGDMVNHRLLKAVIAGKTP 520
>sp|P47350|RNR_MYCGE Ribonuclease R OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=rnr PE=3 SV=1
Length = 725
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 115/463 (24%), Positives = 187/463 (40%), Gaps = 88/463 (19%)
Query: 80 LVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFK--KDSDRVLLAVAQRPDGKK 137
++ I KR R+ + +G L D Q LE+K D+ R L + PD
Sbjct: 140 VITILKRARI-----LYAGNFLVD-------QNEFALEYKIVADNPRFYLTMIVNPDSIP 187
Query: 138 NWMV-----------YDQNGASCSIKPQQV------------TFVVPGVEKFDHKDI--- 171
N + YD + C + QQV ++ F+ D+
Sbjct: 188 NNLASNTKIAFQIDEYDPDNNLCKVSVQQVLGNNDDPLINIKAIMLDNSIVFETNDVVEQ 247
Query: 172 -SNFL--QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
+N L E + R+DLT L +D + +LDDA+ + G + +Y+ +AD
Sbjct: 248 HANKLSFDTEEQHKAYRQDLTDLAFVTVDPTTSKDLDDAIYVKTIPTGFV-LYVAIADVA 306
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTA-TYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
Y+ S D +A + +S++LP PM PE+L+ + SL + V + +
Sbjct: 307 HYVNRNSEIDIEAKHKTSSIYLPGHYVVPMLPEQLSNQLCSLNPAQKRYVVVCEISFDNQ 366
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLH----LNLEEEA--ELKILSEAAALRLQWRLQ 341
G I + + I +Y+ + L+ LN +E LK + L R +
Sbjct: 367 GRIKTNKLYPATIISKNRFSYDQVNKWLNNKSELNCDETVINSLKAAFTLSDLIQAQRQK 426
Query: 342 QGAIDTATLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
+G ID + ET I V E PI IN V D+A+ ++ +M++ E +A + N
Sbjct: 427 RGTIDLSHKETEIVVD--EHYFPIKINFLVHDKAE---TMIENLMVVANETVAWVLTNNK 481
Query: 401 LALPYR----------------------GQPQSNIDVSAFAHLP-------EGPVRSSAI 431
+ALPYR +PQ N+D + + + P +
Sbjct: 482 IALPYRVHPRPSKKKLQSLIETVGELNITKPQFNLDTVTSSQIASWLNENKDNPSYEIFV 541
Query: 432 VKIMRAAAIDFR--KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ ++R F P+ H +G Y FTSPIRRY+DL H
Sbjct: 542 ILLLRTLGKAFYSVNPLMHFSIGSNHYTHFTSPIRRYIDLTIH 584
>sp|A9MQ20|RNB_SALAR Exoribonuclease 2 OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=rnb PE=3 SV=1
Length = 644
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV +T +++ +DGSI + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPTLTCRMIIAADGSIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLH----LNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L + E ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENSGTWQPDNEGIAQQIRLLHRICLSRGEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519
>sp|Q1RC77|RNB_ECOUT Exoribonuclease 2 OS=Escherichia coli (strain UTI89 / UPEC) GN=rnb
PE=3 SV=1
Length = 644
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DG++++ + +ADPT +I GS DK
Sbjct: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDGKLQLIVAIADPTAWIAEGSKLDK 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNS 298
A R + +LP PM P +L+ + SLR EV + + +DG+I + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTFSTDGTIEDNIEFFAA 303
Query: 299 IIKPTYMLTYESATELLH----LNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y+ ++ L E EA ++++L++ R +WR + L+
Sbjct: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRLD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI +C + +G +N
Sbjct: 364 YRFILGEKGEVLDIV-------AEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519
>sp|Q02146|RNR2_LACLA Ribonuclease R 2 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr2 PE=3 SV=3
Length = 665
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 147/341 (43%), Gaps = 50/341 (14%)
Query: 174 FLQKAED-NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIE 232
F +K D +L +R+D + Y ID D++ +LDDA+ +L + ++ +H+AD + Y+
Sbjct: 190 FSEKLTDSDLQDREDYRNEITYTIDGDDSKDLDDAIHVKKLSNWHFELGVHIADVSHYVT 249
Query: 233 PGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSI 290
GS D++A R TSV++ PM P KL+ SL + + +T+S ++ D G I
Sbjct: 250 EGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQ--ERLTMSCLMEIDDKGKI 307
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWR 339
Y + S+IK TY +TY + +++H E E +K+ E + R
Sbjct: 308 VSYKISPSVIKTTYRMTYNNVNKMIHQGQEGHREALENFFKITDSIKVAVELHEILETMR 367
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN 399
+G I+ E +I + P I V+ D A R++ M++ E +A F
Sbjct: 368 KDRGMIEFDESEAKIILDEKGHPIEI----VKRDRDTAERMIESFMLMANETVAL--DFQ 421
Query: 400 NLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDF----------------- 442
LP + N +FA L E + + AI+F
Sbjct: 422 KKKLPSLYRVHDNPKEKSFAKLMEAAANAGFSLNSDSHQAINFFADEIKGTSSEKALTYQ 481
Query: 443 -----------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K +H L Y FTSPIRRY DL+ H
Sbjct: 482 LRHTMSTAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIH 522
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/450 (25%), Positives = 189/450 (42%), Gaps = 87/450 (19%)
Query: 185 RKDL--THLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R+DL THL V++ID +++DD LS L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 REDLRKTHL-VFSIDPSGCEDVDDTLSVRALDNGNLELGVHIADVTHFVAPHSYIDIEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS---IAEYSVDNSI 299
R T+ +L Y M P L+ + SL G + VSV+ D + I + +I
Sbjct: 524 TRATTYYLADRRYDMLPAILSADVCSLLGG--VDRYAVSVMWELDKTSYEIKKVWYGRTI 581
Query: 300 IKPTYMLTYESATELLHLNL---EEEAELKILSE----AAALRLQWRLQQ---------- 342
I+ Y L YE+A +LL N ++ E K L E A L W +++
Sbjct: 582 IRSAYKLFYEAAQDLLDGNFSVVKDIPEFKDLDEKSRQAKLEELVWAIRKLTDIARHIRA 641
Query: 343 -----GAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--Y 395
GA++ +E RI++ D + I+ + Q V+E MIL +A +
Sbjct: 642 KRDSCGALELEGVEVRIQL----DEKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIW 697
Query: 396 GSFNNLALPYRGQP----------------------QSN---IDVSAFAHLPEGPVRSSA 430
SF + AL R P +SN D A+ P P+
Sbjct: 698 ESFPHQALLRRHPPPHQEFFSELRECAKAKGFFIDTRSNKALADSLDNANDPNDPI---- 753
Query: 431 IVKIMRAAAID-------------FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKA 477
+ K++R+ A + H L L Y FTSPIRRY D++ H + A
Sbjct: 754 VNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIIVHRLLMA 813
Query: 478 CLRGESPP------FSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYR 531
+ + FS LE + +N + R A+ S + + + + E + R
Sbjct: 814 AISKDKKMEIQENLFSNKDLEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPETEER 873
Query: 532 AL---ILRFIKDRTAALLLVEVGLQAAAWV 558
+ ++ I+ + + G++ AA++
Sbjct: 874 CISDGVIYSIRTNGVLVFIPRFGIKGAAYL 903
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 175/397 (44%), Gaps = 72/397 (18%)
Query: 182 LLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
L RKDL + +ID ++DDAL A +L +G +V +H+AD T +++PG+ D +
Sbjct: 528 LTKRKDLRDKLICSIDPPGCVDIDDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEG 587
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
RGTSV+L M P L + SL+ A +V L +I + S+I+
Sbjct: 588 AARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIR 647
Query: 302 PTYMLTYESATELLHLNLEEEAELKILSEAAALRL-----QWRLQQGAIDTATLETRI-- 354
+YE A L ++ + + + + A L+L Q RL+ GA++ A+ E ++
Sbjct: 648 SREAFSYEQAQ--LRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHM 705
Query: 355 --KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNNLALPYR--GQ 408
+ ++P + E I L + LV E M+L ++A Y +F A+ R
Sbjct: 706 DSETSDPNEVE-IKKLLATNS------LVEEFMLLANISVARKIYDAFPQTAMLRRHAAP 758
Query: 409 PQSNIDV------------------SAFAHL------PEGPVRSSAIVKIMRAAAI---- 440
P +N ++ A A PE P ++ +V+IM +
Sbjct: 759 PSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNT-LVRIMSTRCMMAAQ 817
Query: 441 ----------DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFS--- 487
DF RH L + Y FTSPIRRY D++AH Q+ + E P S
Sbjct: 818 YFYSGAYSYPDF----RHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYE--PLSLTH 871
Query: 488 --AGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLR 522
+++ + +N + R A+ S+ Y++ + +R
Sbjct: 872 RDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMR 908
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1
Length = 870
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 173/393 (44%), Gaps = 63/393 (16%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + R+DL ++ ID A +LDDAL+ RL DG +V +H+AD + ++ GS DK
Sbjct: 364 DEVGKRRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDK 423
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDN 297
A +R TSV+L PM P L E SL + + +T SV+ L +G I E
Sbjct: 424 VAAERATSVYLVQKVVPMLPRLLCEELCSL--NPMTDKLTFSVIWKLTPEGKILEEWFGR 481
Query: 298 SIIKPTYMLTYESATELLHLNLEE--EAELKILS--------EAAALRL-----QWRLQQ 342
+II+ L+Y+ A ++ E+ E EL +S A L L Q R Q+
Sbjct: 482 TIIRSCTKLSYDHAQSMIENPTEKIPEEELPPISPEHSVEEVHQAVLNLHSIAKQLRRQR 541
Query: 343 GAIDTATLETRIKVANPEDPEPII--NLYVEDQADPAMRLVSEMMILCGEAIA--TYGSF 398
+D A ++K+A D E + ++ + D + +LV E M+L A+A + +F
Sbjct: 542 -FVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRD-SNKLVEEFMLLANMAVAHKIFRTF 599
Query: 399 NNLALPYRG-QPQSNI--DVSAFAH---LPEGPVRSSAIVKIMRAAAID----------- 441
AL R PQ+ + D+ F LP + A+ K + D
Sbjct: 600 PEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSAGALNKSLTKTFGDDKYSLARKEVL 659
Query: 442 ---FRKPV-----------------RHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACL-R 480
+ +P+ RH L +P Y FTSPIRR+ D++ H + A L
Sbjct: 660 TNMYSRPMQMALYFCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALGY 719
Query: 481 GESPPFSAGQLEGMASIVNMQTRIARRLSNTSL 513
E P L+ A N + ++R+ S+
Sbjct: 720 SEQPDVEPDTLQKQADHCNDRRMASKRVQELSI 752
>sp|A7MMD8|RNB_CROS8 Exoribonuclease 2 OS=Cronobacter sakazakii (strain ATCC BAA-894)
GN=rnb PE=3 SV=1
Length = 644
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 166/379 (43%), Gaps = 54/379 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL L R+++ + +ADPT +I GS D
Sbjct: 184 DENLTREDLTALDFVTIDSASTEDMDDALYVEALDGDRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNS 298
A R + +LP PM P +L+ + SLR+G A+ +++ +DG+I+ + +
Sbjct: 244 IAKVRAFTNYLPGFNIPMLPRELSDDLCSLREGVQRPALVCRMIIEADGAISDDIHFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEE-------AELKILSEAAALRLQWRLQQGAIDTATLE 351
II+ L Y+ ++ L + + A++++L + R WR + + +
Sbjct: 304 IIESKAKLAYDDVSDWLEEKGDWQPGSEAIAAQIRLLQQICQRRSAWRTEHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFNNL 401
R + + I+ A+P A R+V E MI +C + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANICAARVLRDKLGFGVYNVH 416
Query: 402 A-------------LPYRGQPQSNIDV---SAFAHL-------PEGPVRSSAIVKIMRAA 438
A L G DV F L P G + S I + A
Sbjct: 417 AGFDPASTEQLATLLQSHGMHVDANDVLTLPGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIV 498
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE SA + + A++
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIIKGE----SATRPQDEATVQ 530
Query: 499 NMQTRIARRLSNTSLRYWI 517
+ R R++ + W+
Sbjct: 531 MAERRRLNRMAERDVGDWL 549
>sp|B7UR96|RNB_ECO27 Exoribonuclease 2 OS=Escherichia coli O127:H6 (strain E2348/69 /
EPEC) GN=rnb PE=3 SV=1
Length = 644
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DG++++ + +ADPT +I GS DK
Sbjct: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDGKLQLIVAIADPTAWIAEGSKLDK 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNS 298
A R + +LP PM P +L+ + SLR EV + + L +DG+I + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSTDGTIEDNIEFFAA 303
Query: 299 IIKPTYMLTYESATELLH----LNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y+ ++ L E EA ++++L++ R +WR + +
Sbjct: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI +C + +G +N
Sbjct: 364 YRFILGEKGEVLDIV-------AEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519
>sp|A8AG96|RNB_CITK8 Exoribonuclease 2 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC
4225-83 / SGSC4696) GN=rnb PE=3 SV=1
Length = 644
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 156/343 (45%), Gaps = 46/343 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L +G++++ + +ADPT +I GS D
Sbjct: 184 DEGLVRQDLTELDFVTIDSASTEDMDDALYAQELGEGKLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ + + +DG+I + + +
Sbjct: 244 IAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAQEVRPALACRMTIAADGTIEDDITFFAA 303
Query: 299 IIKPTYMLTYESATELLH----LNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATLE 351
IK L Y++ ++ L E +A ++++L R +WR + +
Sbjct: 304 TIKSKAKLAYDNVSDWLENTGSWQPESDAIAQQIRLLQRICLSRGEWRHNHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-N 400
R + + I+ A+P A R+V E MI +C + +G +N +
Sbjct: 364 YRFILGEKGEVLDIV-------AEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVH 416
Query: 401 LAL-PYRGQPQSNIDVSAFAHLPEGPVRS-SAIVKIMR------AAAIDFR--------- 443
+ P + + + H+ G V + K+ R + +D R
Sbjct: 417 MGFDPANADALAALLKTHGLHVDTGDVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSFAE 476
Query: 444 ---KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
+P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519
>sp|Q8FHT6|RNB_ECOL6 Exoribonuclease 2 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=rnb PE=3 SV=1
Length = 644
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DG++++ + +ADPT +I GS DK
Sbjct: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDGKLQLIVAIADPTAWIAEGSKLDK 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNS 298
A R + +LP PM P +L+ + SLR EV + + L +DG+I + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSTDGTIEDNIEFFAA 303
Query: 299 IIKPTYMLTYESATELLH----LNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y+ ++ L E EA ++++L++ R +WR + +
Sbjct: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI +C + +G +N
Sbjct: 364 YRFILGEKGEVLDIV-------AEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519
>sp|Q0TI78|RNB_ECOL5 Exoribonuclease 2 OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=rnb PE=3 SV=1
Length = 644
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DG++++ + +ADPT +I GS DK
Sbjct: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDGKLQLIVAIADPTAWIAEGSKLDK 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNS 298
A R + +LP PM P +L+ + SLR EV + + L +DG+I + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSTDGTIEDNIEFFAA 303
Query: 299 IIKPTYMLTYESATELLH----LNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y+ ++ L E EA ++++L++ R +WR + +
Sbjct: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI +C + +G +N
Sbjct: 364 YRFILGEKGEVLDIV-------AEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519
>sp|B7N4A3|RNB_ECOLU Exoribonuclease 2 OS=Escherichia coli O17:K52:H18 (strain UMN026 /
ExPEC) GN=rnb PE=3 SV=1
Length = 644
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DG++++ + +ADPT +I GS DK
Sbjct: 184 DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDGKLQLIVAIADPTAWIAEGSKLDK 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNS 298
A R + +LP PM P +L+ + SLR EV + + L +DG+I + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303
Query: 299 IIKPTYMLTYESATELLH----LNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y+ ++ L E EA ++++L++ R +WR + +
Sbjct: 304 TIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI +C + +G +N
Sbjct: 364 YRFILGEKGEVLDIV-------AEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 MGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES 483
I +P H LGL Y +TSPIR+Y D++ H +KA ++GE+
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGET 519
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,740,874
Number of Sequences: 539616
Number of extensions: 8320025
Number of successful extensions: 22127
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21782
Number of HSP's gapped (non-prelim): 285
length of query: 589
length of database: 191,569,459
effective HSP length: 123
effective length of query: 466
effective length of database: 125,196,691
effective search space: 58341658006
effective search space used: 58341658006
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)