Query 007798
Match_columns 589
No_of_seqs 335 out of 1603
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r7d_A Ribonuclease II family 100.0 5.5E-98 2E-102 816.5 46.4 384 183-588 79-462 (469)
2 2id0_A Exoribonuclease 2; RNAs 100.0 1.7E-93 5.7E-98 809.1 43.3 395 183-587 187-643 (644)
3 2vnu_D Exosome complex exonucl 100.0 1E-90 3.5E-95 798.5 43.2 400 181-586 286-759 (760)
4 2wp8_J Exosome complex exonucl 100.0 2.5E-89 8.6E-94 800.1 35.9 400 181-586 503-976 (977)
5 1kl9_A Eukaryotic translation 97.1 0.00063 2.2E-08 65.1 6.5 68 518-586 5-86 (182)
6 2a19_A EIF-2- alpha, eukaryoti 97.1 0.00069 2.4E-08 64.4 6.6 68 518-586 5-86 (175)
7 2k52_A Uncharacterized protein 96.9 0.0028 9.6E-08 52.1 7.5 59 527-587 6-71 (80)
8 3bzc_A TEX; helix-turn-helix, 96.8 0.00012 4E-09 84.3 -1.4 113 430-587 599-724 (785)
9 2k4k_A GSP13, general stress p 96.8 0.0028 9.6E-08 57.2 7.4 60 527-586 8-76 (130)
10 1luz_A Protein K3, protein K2; 96.8 0.0033 1.1E-07 52.9 7.3 65 519-587 5-82 (88)
11 2khi_A 30S ribosomal protein S 96.5 0.0038 1.3E-07 55.0 6.2 61 527-587 31-101 (115)
12 2khj_A 30S ribosomal protein S 96.0 0.0068 2.3E-07 52.7 5.1 58 527-586 32-100 (109)
13 2cqo_A Nucleolar protein of 40 95.8 0.0065 2.2E-07 54.0 4.0 60 527-586 23-94 (119)
14 2eqs_A ATP-dependent RNA helic 95.6 0.014 4.9E-07 50.3 5.5 58 527-586 13-83 (103)
15 1q8k_A Eukaryotic translation 95.3 0.012 4E-07 60.8 4.6 68 518-586 3-84 (308)
16 3aev_A Translation initiation 95.3 0.033 1.1E-06 56.5 7.8 67 520-586 4-82 (275)
17 1wi5_A RRP5 protein homolog; S 94.6 0.092 3.1E-06 46.2 7.7 60 527-587 22-93 (119)
18 1go3_E DNA-directed RNA polyme 94.3 0.094 3.2E-06 49.7 7.5 65 521-586 77-165 (187)
19 4ayb_E DNA-directed RNA polyme 94.1 0.1 3.4E-06 49.3 7.2 59 521-580 77-154 (180)
20 2ckz_B C25, DNA-directed RNA p 93.9 0.039 1.3E-06 54.1 4.2 64 516-580 72-158 (218)
21 2c35_B Human RPB7, DNA-directe 93.8 0.087 3E-06 49.4 6.3 60 520-580 76-155 (172)
22 3ayh_B DNA-directed RNA polyme 93.4 0.066 2.2E-06 51.8 4.7 63 516-579 72-161 (203)
23 1y14_B B16, RPB7, DNA-directed 93.2 0.11 3.8E-06 48.7 5.8 64 518-582 76-157 (171)
24 2b8k_G B16, DNA-directed RNA p 93.1 0.078 2.7E-06 51.8 4.7 62 520-582 78-157 (215)
25 1e3p_A Guanosine pentaphosphat 93.1 0.0026 8.8E-08 73.1 -6.7 130 453-587 596-740 (757)
26 3cw2_C Translation initiation 92.3 0.048 1.6E-06 55.0 2.0 59 527-586 12-82 (266)
27 3h0g_G DNA-directed RNA polyme 92.0 0.053 1.8E-06 51.0 1.8 64 518-582 77-158 (172)
28 4aid_A Polyribonucleotide nucl 91.9 0.039 1.3E-06 63.0 1.0 61 524-586 636-705 (726)
29 3psi_A Transcription elongatio 90.3 0.24 8.2E-06 59.6 5.6 61 527-587 903-973 (1219)
30 3cdi_A Polynucleotide phosphor 90.0 0.058 2E-06 61.7 0.0 62 524-587 626-696 (723)
31 3go5_A Multidomain protein wit 87.6 1.2 4.3E-05 45.1 8.0 58 527-586 153-214 (285)
32 3psf_A Transcription elongatio 86.0 0.14 5E-06 60.5 0.0 61 527-587 906-976 (1030)
33 2nn6_I 3'-5' exoribonuclease C 64.0 11 0.00038 36.2 6.4 59 527-586 82-160 (209)
34 3i4o_A Translation initiation 58.0 32 0.0011 28.0 7.1 57 528-585 14-77 (79)
35 1jjg_A M156R; beta barrel, S1 54.0 67 0.0023 26.9 8.3 56 527-586 33-100 (102)
36 1hh2_P NUSA, N utilization sub 53.5 17 0.00057 37.8 5.9 59 523-585 132-197 (344)
37 3m7n_A Putative uncharacterize 51.1 22 0.00074 33.2 5.8 53 527-585 58-130 (179)
38 2je6_I RRP4, exosome complex R 49.3 19 0.00066 35.5 5.4 59 527-586 75-145 (251)
39 2ba0_A Archeal exosome RNA bin 48.4 24 0.00082 34.3 5.8 59 527-586 58-126 (229)
40 2z0s_A Probable exosome comple 33.3 31 0.0011 33.6 3.9 58 527-585 67-137 (235)
41 1ah9_A IF1, initiation factor 28.5 43 0.0015 26.3 3.3 54 529-583 7-67 (71)
42 1u07_A TONB protein; beta-hair 27.8 67 0.0023 25.9 4.5 23 277-299 26-48 (90)
43 2asb_A Transcription elongatio 27.5 1.3E+02 0.0045 29.7 7.3 61 523-585 5-78 (251)
44 1k0r_A NUSA; two component arr 25.4 1.2E+02 0.0041 31.6 6.8 62 522-585 127-201 (366)
45 2bx2_L Ribonuclease E, RNAse E 23.7 99 0.0034 33.8 6.1 55 527-581 46-120 (517)
46 2k9k_A TONB2; metal transport; 23.1 82 0.0028 26.1 4.3 22 277-298 41-62 (106)
47 2oqk_A Putative translation in 23.0 1.1E+02 0.0038 26.5 5.2 55 528-583 32-92 (117)
48 3mqp_B Phorbol-12-myristate-13 22.5 31 0.001 21.6 1.0 13 462-474 10-22 (25)
49 1yez_A MM1357; MAR30, autostru 22.5 2.1E+02 0.0073 21.7 6.3 46 527-577 14-59 (68)
No 1
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=100.00 E-value=5.5e-98 Score=816.53 Aligned_cols=384 Identities=27% Similarity=0.390 Sum_probs=364.4
Q ss_pred cCCCCCCCCeeEEEeCCCCCCccceeEEEEecCCeEEEEEEEcCCccccCCCCHHHHHHHhcCceeecCCCccCCCChhh
Q 007798 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKL 262 (589)
Q Consensus 183 ~~R~Dl~~l~~fTID~~~a~DiDDAiSie~~~dG~~~l~VHIADvs~~V~~gS~LD~eA~~RgtSvYLP~~~ipMLP~~L 262 (589)
++|+|||++++|||||++|+|+|||||+++++||+|+|||||||||+||+|||+||+||++||||||||++++||||+.|
T Consensus 79 ~~R~Dlr~l~~~TID~~~a~D~DDAvsve~~~~g~~~l~VHIADVs~~V~~gs~LD~eA~~RgtSvYlp~~~ipMLP~~L 158 (469)
T 2r7d_A 79 EERLDLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL 158 (469)
T ss_dssp SCCEECTTSCEEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHH
T ss_pred cCceecccCCEEEEcCCCCCCccceEEEEEeCCCCEEEEEEeccHhheeCCCCHHHHHHHHhCceEecCCceEcCCChHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcCCCCCeeeEEEEEEEECCCCeEeEEEEEEEEEecccccCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhC
Q 007798 263 AMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQ 342 (589)
Q Consensus 263 s~~~~SL~~g~~r~AlS~~~~ld~~G~I~~~~~~~s~I~s~~~LtY~~v~~~l~~~~~~~~~L~~L~~la~~l~~~R~~~ 342 (589)
+++|||+||++|+||||.|++|++|+|.+++|++|+|+|+ +|||++|+++|+++ .++|..|+++|+.|+++|.++
T Consensus 159 -~~~cSL~pg~dr~als~~~~id~~G~i~~~~~~~svI~s~-rltY~~v~~~l~~~---~~~L~~L~~la~~lr~~R~~~ 233 (469)
T 2r7d_A 159 -VAKAGLGLHEVSPALSICLDLDPDGNAEAVDVLLTRVKVQ-RLAYQEAQARLEAG---EEPFVTLARLARASRRLREGE 233 (469)
T ss_dssp -HHHHSTTSSSSEEEEEEEEEECTTSCEEEEEEEEEEECEE-EEEHHHHHHHHHTT---CTTHHHHHHHHHHHHHHHHHT
T ss_pred -hcccCCCCCCceEEEEEEEEEcCCCCEeeeEEEEEEEEec-cccHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999 99999999999875 478999999999999999999
Q ss_pred CCcccCCcceEEEecCCCCCCCeEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhcCCCcccccCCCCCCChhhhhcCC
Q 007798 343 GAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422 (589)
Q Consensus 343 Gai~~~~pe~~i~l~~~~d~~~~v~i~~~~~~~~a~~LVeE~MIlAN~~~A~~l~~~~ip~lyR~q~~p~~~~~~l~~l~ 422 (589)
|+++|+.||.+|.+++ + .+.+.+.+ ++++++|||||||+||++||+|+.++++|++||+|+.|+.++ ++
T Consensus 234 Gai~~~~pe~~i~~d~---~--~~~i~~~~-~~~a~~lIeE~MilAN~~vA~~l~~~~ip~~yR~h~~p~~~~-----~~ 302 (469)
T 2r7d_A 234 GALSIDLPEVRVKADE---T--GASVFPLP-KPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREV-----AG 302 (469)
T ss_dssp TCCCCCCCCEEEEEET---T--EEEEEECC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCSSCC-----CC
T ss_pred CCcccCCCceEEEECC---C--cceEEecC-CCcHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeCCCCCccc-----Cc
Confidence 9999999999999986 2 58888887 999999999999999999999999999999999999997653 37
Q ss_pred CCcchHHHHHHhhhcCccccCCCCCccccCCCCcccccccccchhhHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHHHH
Q 007798 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQT 502 (589)
Q Consensus 423 ~~~~~~~~l~r~m~~a~ys~~~p~~HfgLgl~~YthfTSPIRRY~DLivHrqL~a~L~g~~~~~~~~~L~~i~~~~~~~~ 502 (589)
++.+.+..++|+|++|.|++ +|.+|||||++.|||||||||||+||+|||||+++|.|+ ++|+.++|+.++.+||.++
T Consensus 303 ~~~~~~~~l~r~m~~a~y~~-~~~~HfgL~~~~YthfTSPIRRY~DLivHr~L~a~l~~~-~~~~~~~l~~~~~~~~~~e 380 (469)
T 2r7d_A 303 DTLPAMWARRKTLARTRFQP-SPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLAGR-DPLSSKVMAAHIAESQMNA 380 (469)
T ss_dssp CSHHHHHHHHHHCCCEEEES-SCCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhcccccccC-CCCCchhhCccceeeECCcccccHHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHH
Confidence 77788889999999999999 999999999999999999999999999999999999887 5789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEeeCeeEEEEeeccceeEEEEeCccCCCCCEEEEEEEeeeCCCCeE
Q 007798 503 RIARRLSNTSLRYWIIEFLRRQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDII 582 (589)
Q Consensus 503 r~a~~aer~~~~~~~~~~L~~~~~g~~~~a~V~~~~~~~~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD~~~~~i 582 (589)
+.++++||++.+||+++||++++ |++|+|+|++. ++++|+|+++++|++ .+.+..|++||+|+|+|.+||+.+++|
T Consensus 381 r~a~~aer~~~~~~~~~~l~~~~-g~~f~g~vv~l-~~~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i 456 (469)
T 2r7d_A 381 DATRQAERLSRRHHTLRFIAAQP-ERVWDAVVVDR-RGAQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRV 456 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT-TCCEEEEEEEE-ETTEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEEE-eCcEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEE
Confidence 99999999999999999999999 69999999984 467899999999988 566678999999999999999999999
Q ss_pred EEEEec
Q 007798 583 YLKEVV 588 (589)
Q Consensus 583 ~~~~v~ 588 (589)
+|+.+.
T Consensus 457 ~f~~~~ 462 (469)
T 2r7d_A 457 RARSVL 462 (469)
T ss_dssp EEEECC
T ss_pred EEEEEh
Confidence 999864
No 2
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=100.00 E-value=1.7e-93 Score=809.08 Aligned_cols=395 Identities=25% Similarity=0.350 Sum_probs=347.6
Q ss_pred cCCCCCCCCeeEEEeCCCCCCccceeEEEEecCCeEEEEEEEcCCccccCCCCHHHHHHHhcCceeecCCCccCCCChhh
Q 007798 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKL 262 (589)
Q Consensus 183 ~~R~Dl~~l~~fTID~~~a~DiDDAiSie~~~dG~~~l~VHIADvs~~V~~gS~LD~eA~~RgtSvYLP~~~ipMLP~~L 262 (589)
..|+|||++++|||||++|+|+|||||+++++||+|+|||||||||+||+|||+||+||++||||||||++++||||+.|
T Consensus 187 ~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~~~iPMLP~~L 266 (644)
T 2id0_A 187 LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPREL 266 (644)
T ss_dssp CCCCCCCSSCCBEEECSSCSCCCEEEEECCCSSSCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEEETTEEECSSCHHH
T ss_pred ccceeccCCcEEEEcCCCCCcccceEEEEEcCCCCEEEEEEeccHHHeeCCCCHHHHHHHHhCCcEeCCCEEEeCCCHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcCCCCCeeeEEEEEEEECCCCeEeE-EEEEEEEEecccccCHHHHHHHHhcCCC-------ChHHHHHHHHHHHH
Q 007798 263 AMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNSIIKPTYMLTYESATELLHLNLE-------EEAELKILSEAAAL 334 (589)
Q Consensus 263 s~~~~SL~~g~~r~AlS~~~~ld~~G~I~~-~~~~~s~I~s~~~LtY~~v~~~l~~~~~-------~~~~L~~L~~la~~ 334 (589)
|+++|||+||++|+||||.|+||++|+|++ ++|++|+|+|+++|||++|+++|+++.. ..+.|..|+++|+.
T Consensus 267 s~~lcSL~p~~dR~a~s~~~~id~~G~v~~~~~~~~svI~s~~rltY~~v~~~l~~~~~~~~~~~~~~~~L~~L~~la~~ 346 (644)
T 2id0_A 267 SDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR 346 (644)
T ss_dssp HTTTSSCCSSCEEEEEEEEEEECSSCCCSTTCCEEEEEEECCCEEEHHHHHHHTTCCSSCCCSCHHHHHHHHHHHHHHHH
T ss_pred hcCcccCCCCCceEEEEEEEEEeCCCCEeeccEEEEEEEEeccccCHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 9999999999999999999999986431 13689999999999
Q ss_pred HHHHHHhCCCcccCCcceEEEecCCCCCCCeEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhcCCCcccccCCCCCCC
Q 007798 335 RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414 (589)
Q Consensus 335 l~~~R~~~Gai~~~~pe~~i~l~~~~d~~~~v~i~~~~~~~~a~~LVeE~MIlAN~~~A~~l~~~~ip~lyR~q~~p~~~ 414 (589)
|+++|.++|+++++.||++|.+++ ++.++.+.+.+ +++||+|||||||+||.+||+|+.++++|++||+|+.|+..
T Consensus 347 lr~~R~~~Gai~~~~pe~~~~ld~---~g~~~~i~~~~-~~~a~~lIeE~MllAN~~vA~~l~~~~~~~lyR~h~~p~~~ 422 (644)
T 2id0_A 347 RGEWRHNHALVFKDRPDYRFILGE---KGEVLDIVAEP-RRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 (644)
T ss_dssp HHHHHHHHSCCCCCCCCEEEEECT---TSCEEEEEECC-CCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEBCCBCTT
T ss_pred HHHHHHhCCCccccCCceEEEECC---CCCEEEEEEec-CCcHHHHHHHHHHHHHHHHHHHHHHcCCCceeecCCCCCHH
Confidence 999999999999999999999986 23457888887 99999999999999999999999999999999999999866
Q ss_pred hh-hhh--------cC---------------------CCCcchHHHHHHhhhcCccccCCCCCccccCCCCccccccccc
Q 007798 415 VS-AFA--------HL---------------------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIR 464 (589)
Q Consensus 415 ~~-~l~--------~l---------------------~~~~~~~~~l~r~m~~a~ys~~~p~~HfgLgl~~YthfTSPIR 464 (589)
+. ++. .+ +.. +.+..++|+|++|.|++ +|.+|||||++.|||||||||
T Consensus 423 ~l~~l~~~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~~-~l~~~l~r~~~~a~ys~-~~~~HfgLa~~~YthfTSPIR 500 (644)
T 2id0_A 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEIST-EPGPHFGLGLEAYATWTSPIR 500 (644)
T ss_dssp THHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHTSSSS-HHHHHHTTSBCCCEEES-SCCCBTTTTBSSCBCCSCTTT
T ss_pred HHHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHhcCChHH-HHHHHHHHhcccccccC-CCCCchhcCCCceeeeCChhh
Confidence 53 111 11 111 33457789999999999 999999999999999999999
Q ss_pred chhhHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--EEEEEEEEEeeC--
Q 007798 465 RYMDLLAHYQVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKER--QYRALILRFIKD-- 540 (589)
Q Consensus 465 RY~DLivHrqL~a~L~g~~~~~~~~~L~~i~~~~~~~~r~a~~aer~~~~~~~~~~L~~~~~g~--~~~a~V~~~~~~-- 540 (589)
||+||+|||||+++|.|++.+.. .+.++.+|+.++++++++||++.+||+++||++++ |+ +|+|+|+++.+.
T Consensus 501 RY~DLivHR~l~a~l~~~~~~~~---~~~~~~~~s~~er~a~~aer~~~~~~~~~~l~~~v-Ge~~~f~g~V~~V~~~G~ 576 (644)
T 2id0_A 501 KYGDMINHRLLKAVIKGETATRP---QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKA-GTDTRFAAEIVDISRGGM 576 (644)
T ss_dssp BHHHHHHHHHHHHHTTC----CC---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT-TSCCCEEEEEEEEETTEE
T ss_pred cchHHHHHHHHHHHHcCCCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCceEEEEEEEEeCCce
Confidence 99999999999999988754322 25678899999999999999999999999999999 68 999999996433
Q ss_pred --------eeEEEEeeccc-----eeEE-------EEeCccCCCCCEEEEEEEeeeCCCCeEEEEEe
Q 007798 541 --------RTAALLLVEVG-----LQAA-------AWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587 (589)
Q Consensus 541 --------~~~~V~l~~lg-----~~~~-------~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~v 587 (589)
.+|+|++++++ +.+. .+.+..|++||+|+|+|.+||+.+++|+|+.+
T Consensus 577 fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~~I~~~l~ 643 (644)
T 2id0_A 577 RVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 (644)
T ss_dssp EEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEEEEEC
T ss_pred EEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCCEEEEEEc
Confidence 25666665553 1110 12234699999999999999999999999876
No 3
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=100.00 E-value=1e-90 Score=798.46 Aligned_cols=400 Identities=23% Similarity=0.279 Sum_probs=342.2
Q ss_pred cccCCCCCCCCeeEEEeCCCCCCccceeEEEEecCCeEEEEEEEcCCccccCCCCHHHHHHHhcCceeecCCCccCCCCh
Q 007798 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPE 260 (589)
Q Consensus 181 ~~~~R~Dl~~l~~fTID~~~a~DiDDAiSie~~~dG~~~l~VHIADvs~~V~~gS~LD~eA~~RgtSvYLP~~~ipMLP~ 260 (589)
....|+|||++++|||||++|+|||||||++++++|+|+|||||||||+||+|||+||+||++||||||||++++||||+
T Consensus 286 ~~~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~ 365 (760)
T 2vnu_D 286 LLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPM 365 (760)
T ss_dssp GGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHHHHSCTTSHHHHHHHHHCBCEECSSCEECSSCH
T ss_pred chhcccccccCeEEEEcCCCCCcccceEEEEEcCCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEecCCceEeCCCh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCCeeeEEEEEEEECCCCeEeEEEEEEEEEecccccCHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHH
Q 007798 261 KLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE---EAELKILSEAAALRLQ 337 (589)
Q Consensus 261 ~Ls~~~~SL~~g~~r~AlS~~~~ld~~G~I~~~~~~~s~I~s~~~LtY~~v~~~l~~~~~~---~~~L~~L~~la~~l~~ 337 (589)
.||+++|||+||++|+||||.|+||++|+|.+++|++|+|+|+++|||++|+++|+++... .+.|..|+++|+.|++
T Consensus 366 ~Ls~~lcSL~p~~dRla~S~~~~id~~G~v~~~~~~~svI~s~~rltY~~v~~~l~~~~~~~~l~~~L~~L~~la~~lr~ 445 (760)
T 2vnu_D 366 LLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQ 445 (760)
T ss_dssp HHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEEHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcccccccCCCCcEEEEEEEEEEcCCCCEEEEEEEEEEEEecceEcHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999875332 4689999999999999
Q ss_pred HHHhCCCcccCCcceEEEecCCCCCCCeEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhc-CCCcccccCCCCCCChh
Q 007798 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN-NLALPYRGQPQSNIDVS 416 (589)
Q Consensus 338 ~R~~~Gai~~~~pe~~i~l~~~~d~~~~v~i~~~~~~~~a~~LVeE~MIlAN~~~A~~l~~~-~ip~lyR~q~~p~~~~~ 416 (589)
+|.++|+++|+.||++|.+++. .+.++.+...+ +.+||+|||||||+||.+||+|+.++ +.|++||+|+.|+..+.
T Consensus 446 ~R~~~Gai~~~~pe~~~~ld~e--~g~~~~i~~~~-~~~a~~lIeE~MllAN~~vA~~l~~~~~~~~l~R~h~~P~~~~l 522 (760)
T 2vnu_D 446 KRLEAGALNLASPEVKVHMDSE--TSDPNEVEIKK-LLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNF 522 (760)
T ss_dssp HHHHTTCCCCCCCCEEEEECSS--SSCEEEEEECC-CCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGG
T ss_pred HHHhCCCcccCCCceEEEEecC--CCcEEEEEEcC-CccHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCCCHHHH
Confidence 9999999999999999999831 23457888887 89999999999999999999999987 79999999999976543
Q ss_pred -hh------h-cCC-------------------CCcchH----HHHHHhhhcCccc------cCCCCCccccCCCCcccc
Q 007798 417 -AF------A-HLP-------------------EGPVRS----SAIVKIMRAAAID------FRKPVRHGVLGLPGYVQF 459 (589)
Q Consensus 417 -~l------~-~l~-------------------~~~~~~----~~l~r~m~~a~ys------~~~p~~HfgLgl~~Ythf 459 (589)
+| . .+. ..+..+ .+++|+|++|.|+ + +|.+|||||++.||||
T Consensus 523 ~~l~~~~~~~~g~~l~~~~~~~l~~~l~~~~~~~~~~~~~ll~~~~~r~m~~A~Y~~~g~~~~-~~~~HfgLa~~~YtHf 601 (760)
T 2vnu_D 523 EILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSY-PDFRHYGLAVDIYTHF 601 (760)
T ss_dssp HHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTSCCCEEEEGGGSCG-GGGCBTTTTBSCCCCC
T ss_pred HHHHHHHHHccCCCcCCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhhCccccccCcCCC-CCCCceecCCCceecc
Confidence 11 1 111 112112 3456899999996 6 8999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHcCCCCC---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEE
Q 007798 460 TSPIRRYMDLLAHYQVKACLRGESPP---FSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536 (589)
Q Consensus 460 TSPIRRY~DLivHrqL~a~L~g~~~~---~~~~~L~~i~~~~~~~~r~a~~aer~~~~~~~~~~L~~~~~g~~~~a~V~~ 536 (589)
|||||||+||+|||||+++|.+++.+ ++.++|..++.+||.+++.++++||++.+||+++||++++ ++|+|+|++
T Consensus 602 TSPIRRY~DLivHR~L~~~l~~~~~~~~~~~~~~l~~~~~~~s~~er~A~~aer~~~~~~~~~~l~~~~--~~~~g~V~~ 679 (760)
T 2vnu_D 602 TSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNE--STETGYVIK 679 (760)
T ss_dssp SCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--SEEEEEEEE
T ss_pred CchHhhhHHHHHHHHHHHHHccCCCcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCc--eEEEEEEEE
Confidence 99999999999999999999875433 4567899999999999999999999999999999999987 799999999
Q ss_pred EeeC----------eeEEEEeeccc--ee---E-------EE-Ee----CccCCCCCEEEEEEEeeeCC---CCeEEEEE
Q 007798 537 FIKD----------RTAALLLVEVG--LQ---A-------AA-WV----SVGAQIGDEVEVKVEEAHPR---DDIIYLKE 586 (589)
Q Consensus 537 ~~~~----------~~~~V~l~~lg--~~---~-------~~-~~----~~~~~lGd~V~V~I~~vD~~---~~~i~~~~ 586 (589)
+... .+|+|+++++. -+ + .. +. +..|++||+|+|+|.+||.. +++|+|+.
T Consensus 680 V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~~~~kI~lsl 759 (760)
T 2vnu_D 680 VFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLL 759 (760)
T ss_dssp EETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC--------CCEEEC--
T ss_pred EECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccccCCcEEEEe
Confidence 5432 24556665552 11 1 11 11 24599999999999999988 68999864
No 4
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-89 Score=800.13 Aligned_cols=400 Identities=23% Similarity=0.287 Sum_probs=346.1
Q ss_pred cccCCCCCCCCeeEEEeCCCCCCccceeEEEEecCCeEEEEEEEcCCccccCCCCHHHHHHHhcCceeecCCCccCCCCh
Q 007798 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPE 260 (589)
Q Consensus 181 ~~~~R~Dl~~l~~fTID~~~a~DiDDAiSie~~~dG~~~l~VHIADvs~~V~~gS~LD~eA~~RgtSvYLP~~~ipMLP~ 260 (589)
...+|+|||++++|||||++|+|||||||++++++|+|+|||||||||+||+|||+||+||++||||||||++++||||+
T Consensus 503 ~~~~R~Dlr~l~~~TID~~~akDlDDAvsie~~~~G~~~lgVHIADVs~yV~~gS~LD~eA~~RgtSvYLpdrviPMLP~ 582 (977)
T 2wp8_J 503 LLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPM 582 (977)
T ss_dssp GGGGCEECTTSCCEEEECTTCSCCCEEEEEEECTTSCEEEEEEEECHHHHSCSSSHHHHHHHHHCBCEEETTEEECSSCH
T ss_pred ccccceecccCcEEEECCCCCCcccceEEEEEcCCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEeCCCceEeCCCh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCCeeeEEEEEEEECCCCeEeEEEEEEEEEecccccCHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHH
Q 007798 261 KLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE---EAELKILSEAAALRLQ 337 (589)
Q Consensus 261 ~Ls~~~~SL~~g~~r~AlS~~~~ld~~G~I~~~~~~~s~I~s~~~LtY~~v~~~l~~~~~~---~~~L~~L~~la~~l~~ 337 (589)
.||+++|||+||++|+||||.|+||++|+|.+++|++|+|+|+++|||++|+++|+++... .+.|..|+++|+.|++
T Consensus 583 ~LS~~lcSL~pg~dRla~Sv~~~id~~G~i~~~~~~~svIrs~~rltY~~v~~~l~~~~~~~~l~~~L~~L~~la~~Lr~ 662 (977)
T 2wp8_J 583 LLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQ 662 (977)
T ss_dssp HHHTTTSSCCBTSEEEEEEEEEEECTTSCEEEEEEEEEEEEBSEEEEHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCceEEEEEEEEECCCCCEEEEEEEEEEEEecceEcHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999875432 4689999999999999
Q ss_pred HHHhCCCcccCCcceEEEecCCCCCCCeEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhc-CCCcccccCCCCCCChh
Q 007798 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN-NLALPYRGQPQSNIDVS 416 (589)
Q Consensus 338 ~R~~~Gai~~~~pe~~i~l~~~~d~~~~v~i~~~~~~~~a~~LVeE~MIlAN~~~A~~l~~~-~ip~lyR~q~~p~~~~~ 416 (589)
+|.++|+++|+.||.+|.+++. ++.++.+...+ +.+||+|||||||+||.+||+|+.++ +.|++||+|+.|+..+.
T Consensus 663 ~R~~~Gai~~~~pE~~~~ld~e--~g~~~~i~~~~-~~~a~~LIEE~MllAN~~vA~~l~~~~~~~~lyR~h~~P~~~kl 739 (977)
T 2wp8_J 663 KRLEAGALNLASPEVKVHMDSE--TSDPNEVEIKK-LLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNF 739 (977)
T ss_dssp HHHTTTCCCCCSHHHHTTSCCT--TCCCCCSSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGG
T ss_pred HHHhCCCcccCCCceEEEeccC--CCceEEEEecC-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHH
Confidence 9999999999999999988831 23346776666 88999999999999999999999976 79999999999976543
Q ss_pred -hh------h-cCC-------------------CCcchH----HHHHHhhhcCcc------ccCCCCCccccCCCCcccc
Q 007798 417 -AF------A-HLP-------------------EGPVRS----SAIVKIMRAAAI------DFRKPVRHGVLGLPGYVQF 459 (589)
Q Consensus 417 -~l------~-~l~-------------------~~~~~~----~~l~r~m~~a~y------s~~~p~~HfgLgl~~Ythf 459 (589)
+| . .++ ..+..+ .+++|+|++|.| ++ +|.+|||||++.||||
T Consensus 740 ~~l~~~~~~~~G~~l~~~~~~~l~~~L~~~~~~~~~~~~~ll~~~~lrsm~~A~Y~~sg~~s~-~~~gHfgLa~~~YtHf 818 (977)
T 2wp8_J 740 EILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSY-PDFRHYGLAVDIYTHF 818 (977)
T ss_dssp HHHHHHHHHHHSCCCCCSSHHHHHHHHHHCCCSSCTTHHHHHHHHHHTTSCCCEEEEGGGSCG-GGSCBTTTTBSSCCCC
T ss_pred HHHHHHHHHccCCCCCCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHHhccCceeecccccCC-CCCCceecCCCCeecc
Confidence 11 1 111 112112 245789999999 67 8999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHcCCCCC---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEE
Q 007798 460 TSPIRRYMDLLAHYQVKACLRGESPP---FSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQYRALILR 536 (589)
Q Consensus 460 TSPIRRY~DLivHrqL~a~L~g~~~~---~~~~~L~~i~~~~~~~~r~a~~aer~~~~~~~~~~L~~~~~g~~~~a~V~~ 536 (589)
|||||||+||+|||||+++|.+++.+ ++.+.|..++.+||.+++.|+++||++.+||+++||+++ |++|+|+|++
T Consensus 819 TSPIRRY~DLivHR~L~a~L~~~~~~~~~~~~~~l~~i~~~~s~~er~A~~aeR~~~~~~~~~~l~~~--ge~~~g~V~~ 896 (977)
T 2wp8_J 819 TSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNN--ESTETGYVIK 896 (977)
T ss_dssp SCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEE
T ss_pred CchHhhHHHHHHHHHHHHHhcCCCCcccccCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhccc--ceEEEEEEEE
Confidence 99999999999999999999876433 566789999999999999999999999999999999998 4899999999
Q ss_pred EeeC----------eeEEEEeeccc--ee---E-------EEEe-----CccCCCCCEEEEEEEeeeCC---CCeEEEEE
Q 007798 537 FIKD----------RTAALLLVEVG--LQ---A-------AAWV-----SVGAQIGDEVEVKVEEAHPR---DDIIYLKE 586 (589)
Q Consensus 537 ~~~~----------~~~~V~l~~lg--~~---~-------~~~~-----~~~~~lGd~V~V~I~~vD~~---~~~i~~~~ 586 (589)
+... .+|+|++++++ -+ + .+.. +..|++||+|+|+|.+||.. ++.|.|..
T Consensus 897 V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~~~~~kI~Lsl 976 (977)
T 2wp8_J 897 VFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLL 976 (977)
T ss_dssp ECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSSSCCCCCCEEE
T ss_pred EcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcccCCCceEEEe
Confidence 5322 35667766664 11 1 1121 25699999999999999973 37888764
No 5
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=97.10 E-value=0.00063 Score=65.08 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=45.3
Q ss_pred HHHHhc---CCCCcEEEEEEEEEee-----------CeeEEEEeeccceeEEEEeCccCCCCCEEEEEEEeeeCCCCeEE
Q 007798 518 IEFLRR---QPKERQYRALILRFIK-----------DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIY 583 (589)
Q Consensus 518 ~~~L~~---~~~g~~~~a~V~~~~~-----------~~~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~ 583 (589)
|+|+++ +. |+.+.|.|+++.. ..+|+||++++.-.........+++||.|+|+|.++|+.++.|+
T Consensus 5 ~~~~~~~~p~~-G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~ 83 (182)
T 1kl9_A 5 CRFYQHKFPEV-EDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYID 83 (182)
T ss_dssp CCSSSSSSCCT-TCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEE
T ss_pred eEeccccCCCC-CCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEE
Confidence 567776 45 7999999999521 14677777776543333334569999999999999999999999
Q ss_pred EEE
Q 007798 584 LKE 586 (589)
Q Consensus 584 ~~~ 586 (589)
|..
T Consensus 84 LSl 86 (182)
T 1kl9_A 84 LSK 86 (182)
T ss_dssp EES
T ss_pred EEE
Confidence 975
No 6
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=97.09 E-value=0.00069 Score=64.39 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=46.6
Q ss_pred HHHHhcC---CCCcEEEEEEEEEeeC-----------eeEEEEeeccceeEEEEeCccCCCCCEEEEEEEeeeCCCCeEE
Q 007798 518 IEFLRRQ---PKERQYRALILRFIKD-----------RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIY 583 (589)
Q Consensus 518 ~~~L~~~---~~g~~~~a~V~~~~~~-----------~~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~ 583 (589)
|+|+++. . |+.+.|.|+++... .+|+||++++.-.........+++||.|+|+|.++|+.++.|+
T Consensus 5 ~~~~~~~~p~~-G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~ 83 (175)
T 2a19_A 5 CRFYENKYPEI-DDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYID 83 (175)
T ss_dssp CCSSSSSSCCT-TCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEE
T ss_pred eEEhhhcCCCC-CCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEE
Confidence 4566666 4 79999999985221 3566666666433333334569999999999999999999999
Q ss_pred EEE
Q 007798 584 LKE 586 (589)
Q Consensus 584 ~~~ 586 (589)
|..
T Consensus 84 LSl 86 (175)
T 2a19_A 84 LSK 86 (175)
T ss_dssp EES
T ss_pred EEE
Confidence 975
No 7
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=96.86 E-value=0.0028 Score=52.06 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=41.4
Q ss_pred CcEEEEEEEEEeeCeeEEEEeeccceeEEEEeC-------ccCCCCCEEEEEEEeeeCCCCeEEEEEe
Q 007798 527 ERQYRALILRFIKDRTAALLLVEVGLQAAAWVS-------VGAQIGDEVEVKVEEAHPRDDIIYLKEV 587 (589)
Q Consensus 527 g~~~~a~V~~~~~~~~~~V~l~~lg~~~~~~~~-------~~~~lGd~V~V~I~~vD~~~~~i~~~~v 587 (589)
|+.+.|.|+++... ..+|.+.+ +.++..... ..+++||.|+|+|.++|+.+++|+|...
T Consensus 6 G~iv~G~V~~v~~~-G~fV~l~~-~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~lsl~ 71 (80)
T 2k52_A 6 GKFYKGVVTRIEKY-GAFINLNE-QVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYI 71 (80)
T ss_dssp TCEEEEEEEEEETT-EEEEEEET-TEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEEEEEeCC-EEEEEECC-CCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 79999999985432 22344432 333322111 3699999999999999999999999864
No 8
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=96.84 E-value=0.00012 Score=84.30 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=75.5
Q ss_pred HHHHhhhcCccccCCCCCccccCCCCcccccccccchhhHHHHHHHHHHHcCCC-C--CCChhhHHHHHHHHHHHHHHHH
Q 007798 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVKACLRGES-P--PFSAGQLEGMASIVNMQTRIAR 506 (589)
Q Consensus 430 ~l~r~m~~a~ys~~~p~~HfgLgl~~YthfTSPIRRY~DLivHrqL~a~L~g~~-~--~~~~~~L~~i~~~~~~~~r~a~ 506 (589)
.++|.|..+.|+. .||||. ++|+.|+.++.+.. + .|....+.
T Consensus 599 ~~Lrsl~~a~Ya~----~hfGl~-----------------tl~rIi~eL~kpg~d~R~~~~~~~~~-------------- 643 (785)
T 3bzc_A 599 AFLKRLDPKKFTD----ETFGLP-----------------TVTDILKELDKPGRDPRPEFKTAEFQ-------------- 643 (785)
T ss_dssp HHHHHSCGGGTCC----SSSCHH-----------------HHHHHHHHHHSTTCCCSCCCCTTTTC--------------
T ss_pred HHHHhcCHHHHhh----hcCCcH-----------------HHHHHHHHHhccCCChhhhcccchhh--------------
Confidence 4678888999985 488865 89999999886431 1 12111110
Q ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEEEEEeeC---------eeEEEEeeccceeEEEEeCccCCCCCEEEEEEEeee
Q 007798 507 RLSNTSLRYWIIEFLR-RQPKERQYRALILRFIKD---------RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAH 576 (589)
Q Consensus 507 ~aer~~~~~~~~~~L~-~~~~g~~~~a~V~~~~~~---------~~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD 576 (589)
++. .-+. -++ |++++|+|+++... .+|+|+++++.-.+....+..|++||.|+|+|.+||
T Consensus 644 ---~~v------e~~~~l~v-G~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD 713 (785)
T 3bzc_A 644 ---EGV------ESLKDLKP-GMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVD 713 (785)
T ss_dssp ---CCC------CSSTTCCT-TCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEE
T ss_pred ---hcc------cchhhcCC-CCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEE
Confidence 000 0011 234 79999999996432 367888887754322222345999999999999999
Q ss_pred CCCCeEEEEEe
Q 007798 577 PRDDIIYLKEV 587 (589)
Q Consensus 577 ~~~~~i~~~~v 587 (589)
+.++.|+|+..
T Consensus 714 ~~~~rI~LSlk 724 (785)
T 3bzc_A 714 IPRNRVGLSMR 724 (785)
T ss_dssp TTTTEEEECCS
T ss_pred CCCCEEEEEEe
Confidence 99999999753
No 9
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=96.76 E-value=0.0028 Score=57.15 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=44.5
Q ss_pred CcEEEEEEEEEeeC---------eeEEEEeeccceeEEEEeCccCCCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 527 ERQYRALILRFIKD---------RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 527 g~~~~a~V~~~~~~---------~~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
|+.+.|.|+++... ..|+|+++++.-.........|++||.|.|+|.+||+.++.|+|..
T Consensus 8 G~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSl 76 (130)
T 2k4k_A 8 GSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSI 76 (130)
T ss_dssp TCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEES
T ss_pred CCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 79999999996322 3566666666433222223569999999999999999999999974
No 10
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=96.76 E-value=0.0033 Score=52.90 Aligned_cols=65 Identities=14% Similarity=0.050 Sum_probs=45.5
Q ss_pred HHHhcCCCCcEEEEEEEEEeeCeeEEEEeecc-ceeEEEEeC------------ccCCCCCEEEEEEEeeeCCCCeEEEE
Q 007798 519 EFLRRQPKERQYRALILRFIKDRTAALLLVEV-GLQAAAWVS------------VGAQIGDEVEVKVEEAHPRDDIIYLK 585 (589)
Q Consensus 519 ~~L~~~~~g~~~~a~V~~~~~~~~~~V~l~~l-g~~~~~~~~------------~~~~lGd~V~V~I~~vD~~~~~i~~~ 585 (589)
.|+..+. |+.+.|.|+ +... ..+|.|.++ |.++-.+.. ..+ +||+|+|+|.++|+.+++|+|.
T Consensus 5 ~y~~~~v-G~~~~G~V~-v~~f-G~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~ls 80 (88)
T 1luz_A 5 CYSLPNA-GDVIKGRVY-EKDY-ALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVN 80 (88)
T ss_dssp CSCCCCT-TCEEEEEEE-EETT-EEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEE
T ss_pred EecCCCC-CCEEEEEEE-EEcc-EEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEE
Confidence 4666677 799999999 6432 234555443 444432221 236 9999999999999999999997
Q ss_pred Ee
Q 007798 586 EV 587 (589)
Q Consensus 586 ~v 587 (589)
..
T Consensus 81 lk 82 (88)
T 1luz_A 81 YK 82 (88)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 11
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=96.50 E-value=0.0038 Score=55.00 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=44.1
Q ss_pred CcEEEEEEEEEeeC---------eeEEEEeecccee-EEEEeCccCCCCCEEEEEEEeeeCCCCeEEEEEe
Q 007798 527 ERQYRALILRFIKD---------RTAALLLVEVGLQ-AAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587 (589)
Q Consensus 527 g~~~~a~V~~~~~~---------~~~~V~l~~lg~~-~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~v 587 (589)
|+++.|.|+++... ..|+|+++++... ...+....+++||.|+|+|.++|+.+++|+|...
T Consensus 31 G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk 101 (115)
T 2khi_A 31 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 101 (115)
T ss_dssp SCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCC
T ss_pred CCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEE
Confidence 79999999985332 3566666665321 1112234699999999999999999999998653
No 12
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=96.01 E-value=0.0068 Score=52.75 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=40.9
Q ss_pred CcEEEEEEEEEeeCeeEEEEeeccceeEEE-----------EeCccCCCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 527 ERQYRALILRFIKDRTAALLLVEVGLQAAA-----------WVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 527 g~~~~a~V~~~~~~~~~~V~l~~lg~~~~~-----------~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
|+.+.|.|+++... ..+|.|.+ |+++.. .....|++||.|+|+|.++|+..++|+|..
T Consensus 32 G~iv~G~V~~v~~~-G~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~ 100 (109)
T 2khj_A 32 GAIVTGKVTAVDAK-GATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 100 (109)
T ss_dssp SSEEEEEEEEECSS-CEEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEET
T ss_pred CCEEEEEEEEEECC-eEEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEE
Confidence 89999999986432 23344432 333221 112358999999999999999999999864
No 13
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.78 E-value=0.0065 Score=53.97 Aligned_cols=60 Identities=12% Similarity=0.007 Sum_probs=40.7
Q ss_pred CcEEEEEEEEEeeCe----------eEEEEeeccceeEEEEeCccCCCCCEEEEEEEeeeCCC--CeEEEEE
Q 007798 527 ERQYRALILRFIKDR----------TAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRD--DIIYLKE 586 (589)
Q Consensus 527 g~~~~a~V~~~~~~~----------~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD~~~--~~i~~~~ 586 (589)
|+.+.|.|+++...+ .|+||++++......+....|++||.|+|+|.++|+.+ +.|+|..
T Consensus 23 G~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSl 94 (119)
T 2cqo_A 23 YTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSM 94 (119)
T ss_dssp TCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEES
T ss_pred CCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEE
Confidence 799999999964321 44455544432211112235999999999999999874 6898874
No 14
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.64 E-value=0.014 Score=50.26 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=39.1
Q ss_pred CcEEEEEEEEEeeC------------eeEEEEeeccceeEE-EEeCccCCCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 527 ERQYRALILRFIKD------------RTAALLLVEVGLQAA-AWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 527 g~~~~a~V~~~~~~------------~~~~V~l~~lg~~~~-~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
|+.+.|.|+++... .+|+||++++.-+.. .+....|++||.|+|+|.++|+ ++|+|..
T Consensus 13 G~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSl 83 (103)
T 2eqs_A 13 GDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSM 83 (103)
T ss_dssp TCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEES
T ss_pred CCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEE
Confidence 79999999995321 245555555521111 1112359999999999999997 5888864
No 15
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=95.35 E-value=0.012 Score=60.77 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=47.0
Q ss_pred HHHHhcC---CCCcEEEEEEEEEeeC-----------eeEEEEeeccceeEEEEeCccCCCCCEEEEEEEeeeCCCCeEE
Q 007798 518 IEFLRRQ---PKERQYRALILRFIKD-----------RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIY 583 (589)
Q Consensus 518 ~~~L~~~---~~g~~~~a~V~~~~~~-----------~~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~ 583 (589)
|+|+.+. . |+.+.|.|+++... ..|+|+++++.-....+....+++||.|.|+|.++|+.++.|+
T Consensus 3 ~~f~~~~~~~v-G~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~ 81 (308)
T 1q8k_A 3 CRFYQHKFPEV-EDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYID 81 (308)
T ss_dssp CCSSSSCCCSS-CCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEE
T ss_pred eEehhhcCCCC-CCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEE
Confidence 4566654 4 79999999985322 2344555544322111223458999999999999999999999
Q ss_pred EEE
Q 007798 584 LKE 586 (589)
Q Consensus 584 ~~~ 586 (589)
|..
T Consensus 82 LSl 84 (308)
T 1q8k_A 82 LSK 84 (308)
T ss_dssp EEC
T ss_pred EEE
Confidence 975
No 16
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=95.31 E-value=0.033 Score=56.50 Aligned_cols=67 Identities=22% Similarity=0.152 Sum_probs=44.1
Q ss_pred HHhcCC-CCcEEEEEEEEEeeC-----------eeEEEEeeccceeEEEEeCccCCCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 520 FLRRQP-KERQYRALILRFIKD-----------RTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 520 ~L~~~~-~g~~~~a~V~~~~~~-----------~~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
|.+..+ .|+.+.|.|+++... ..|++|++++.-.........+++||.|.|+|.++|+.++.|+|..
T Consensus 4 ~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSl 82 (275)
T 3aev_A 4 KAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSL 82 (275)
T ss_dssp ---CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEES
T ss_pred ccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEE
Confidence 455554 279999999995322 2344555444322111122458999999999999999999999975
No 17
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=94.57 E-value=0.092 Score=46.20 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=42.1
Q ss_pred CcEEEEEEEEEeeCeeEEEEeeccceeEEE------------EeCccCCCCCEEEEEEEeeeCCCCeEEEEEe
Q 007798 527 ERQYRALILRFIKDRTAALLLVEVGLQAAA------------WVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587 (589)
Q Consensus 527 g~~~~a~V~~~~~~~~~~V~l~~lg~~~~~------------~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~v 587 (589)
|+.+.|.|+++.. ...+|.|..-+..+.. ..+..|++||.|+|+|.++|..+++|+|...
T Consensus 22 G~i~~G~V~~v~~-fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk 93 (119)
T 1wi5_A 22 GMLLTGTVSSLED-HGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVG 93 (119)
T ss_dssp TCEEEEEEEEECS-SEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECC
T ss_pred CCEEEEEEEEEeC-ceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEc
Confidence 7999999999643 3334555411222221 1124699999999999999999999999864
No 18
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=94.25 E-value=0.094 Score=49.73 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=45.5
Q ss_pred HhcCCCCcEEEEEEEEEeeC--------eeEEEEeeccceeEEE-----------EeCccCCCCCEEEEEEEeeeCCCC-
Q 007798 521 LRRQPKERQYRALILRFIKD--------RTAALLLVEVGLQAAA-----------WVSVGAQIGDEVEVKVEEAHPRDD- 580 (589)
Q Consensus 521 L~~~~~g~~~~a~V~~~~~~--------~~~~V~l~~lg~~~~~-----------~~~~~~~lGd~V~V~I~~vD~~~~- 580 (589)
++.+. |+.+.|.|+++... .+|+++++++.-+... .....+++||.|+|+|.++|..++
T Consensus 77 ~~~~~-Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 77 YIPEM-YELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp ECCCT-TCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred EccCC-CCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 34556 79999999996433 3577787776432211 123459999999999999998755
Q ss_pred ----eEEEEE
Q 007798 581 ----IIYLKE 586 (589)
Q Consensus 581 ----~i~~~~ 586 (589)
.|.|+.
T Consensus 156 p~~~~I~lS~ 165 (187)
T 1go3_E 156 KRGSKIALTM 165 (187)
T ss_dssp ---CEEEEEC
T ss_pred CCccEEEEEE
Confidence 887764
No 19
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=94.05 E-value=0.1 Score=49.27 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=40.9
Q ss_pred HhcCCCCcEEEEEEEEEeeC--------eeEEEEeeccceeEEE-----------EeCccCCCCCEEEEEEEeeeCCCC
Q 007798 521 LRRQPKERQYRALILRFIKD--------RTAALLLVEVGLQAAA-----------WVSVGAQIGDEVEVKVEEAHPRDD 580 (589)
Q Consensus 521 L~~~~~g~~~~a~V~~~~~~--------~~~~V~l~~lg~~~~~-----------~~~~~~~lGd~V~V~I~~vD~~~~ 580 (589)
++... |+.++|.|+++... .+|+|+++++.-+... +.+..+++||.|+|||.+||+...
T Consensus 77 ~~p~~-Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~ 154 (180)
T 4ayb_E 77 YVPVV-QEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVT 154 (180)
T ss_dssp ECCCT-TCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC---
T ss_pred eeccC-CCEEEEEEeeeccceEEEEECCccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCC
Confidence 34445 79999999996443 3677888877544321 234569999999999999997543
No 20
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.039 Score=54.09 Aligned_cols=64 Identities=5% Similarity=0.004 Sum_probs=46.0
Q ss_pred HHHHHHhcCCCCcEEEEEEEEEeeCe---------eEEEEeecccee---E-------EE----EeCccCCCCCEEEEEE
Q 007798 516 WIIEFLRRQPKERQYRALILRFIKDR---------TAALLLVEVGLQ---A-------AA----WVSVGAQIGDEVEVKV 572 (589)
Q Consensus 516 ~~~~~L~~~~~g~~~~a~V~~~~~~~---------~~~V~l~~lg~~---~-------~~----~~~~~~~lGd~V~V~I 572 (589)
+.+.|++.+. |++|+|+|+++.+.+ +|+++++++.-+ + .. +++..|++||+|+|+|
T Consensus 72 fk~~~f~p~v-GEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV 150 (218)
T 2ckz_B 72 FRAVVFKPFL-GEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 (218)
T ss_dssp EEEEEECCCT-TCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEE
T ss_pred EEEEEecCCC-CCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEE
Confidence 4567888888 799999999964432 456777666322 1 12 2245699999999999
Q ss_pred EeeeCCCC
Q 007798 573 EEAHPRDD 580 (589)
Q Consensus 573 ~~vD~~~~ 580 (589)
.+||..++
T Consensus 151 ~~v~~~~~ 158 (218)
T 2ckz_B 151 EREVFVDV 158 (218)
T ss_dssp EEEEECCC
T ss_pred EEEEcccC
Confidence 99998765
No 21
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=93.84 E-value=0.087 Score=49.39 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=43.5
Q ss_pred HHhcCCCCcEEEEEEEEEeeC--------eeEEEEeeccceeEEE------------EeCccCCCCCEEEEEEEeeeCCC
Q 007798 520 FLRRQPKERQYRALILRFIKD--------RTAALLLVEVGLQAAA------------WVSVGAQIGDEVEVKVEEAHPRD 579 (589)
Q Consensus 520 ~L~~~~~g~~~~a~V~~~~~~--------~~~~V~l~~lg~~~~~------------~~~~~~~lGd~V~V~I~~vD~~~ 579 (589)
+++.+. |+.++|+|+++... ..|+|+++++.-.+.. +.+..+++||.|+|+|.++|..+
T Consensus 76 ~~~~~~-Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (172)
T 2c35_B 76 VFRPFK-GEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp EECCCT-TCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred EeeCCC-CCEEEEEEEEEeCCEEEEEECCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCC
Confidence 555567 79999999996432 3588999887532221 11235899999999999999876
Q ss_pred C
Q 007798 580 D 580 (589)
Q Consensus 580 ~ 580 (589)
+
T Consensus 155 ~ 155 (172)
T 2c35_B 155 N 155 (172)
T ss_dssp T
T ss_pred C
Confidence 6
No 22
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=93.39 E-value=0.066 Score=51.79 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCCcEEEEEEEEEeeCe--------eEEEEeeccceeE----------EE---------EeCccCCCCCEE
Q 007798 516 WIIEFLRRQPKERQYRALILRFIKDR--------TAALLLVEVGLQA----------AA---------WVSVGAQIGDEV 568 (589)
Q Consensus 516 ~~~~~L~~~~~g~~~~a~V~~~~~~~--------~~~V~l~~lg~~~----------~~---------~~~~~~~lGd~V 568 (589)
+.+.|++.+. |++++|+|+++.+.+ +++++++++.-+. .. +.+..+++||+|
T Consensus 72 fk~~~f~p~~-GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~V 150 (203)
T 3ayh_B 72 FRLIIFRPFR-GEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEI 150 (203)
T ss_dssp EEEEEECCCT-TCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEE
T ss_pred EEEEEEccCC-CCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEE
Confidence 3455777788 799999999965442 4667777663221 11 224569999999
Q ss_pred EEEEEeeeCCC
Q 007798 569 EVKVEEAHPRD 579 (589)
Q Consensus 569 ~V~I~~vD~~~ 579 (589)
+|+|.++|...
T Consensus 151 rvrV~~v~~~~ 161 (203)
T 3ayh_B 151 RFQIESEDFVD 161 (203)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEEccc
Confidence 99999999854
No 23
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=93.20 E-value=0.11 Score=48.69 Aligned_cols=64 Identities=8% Similarity=-0.027 Sum_probs=45.2
Q ss_pred HHHHhcCCCCcEEEEEEEEEeeC--------eeEEEEeeccceeEE---EEe-------CccCCCCCEEEEEEEeeeCCC
Q 007798 518 IEFLRRQPKERQYRALILRFIKD--------RTAALLLVEVGLQAA---AWV-------SVGAQIGDEVEVKVEEAHPRD 579 (589)
Q Consensus 518 ~~~L~~~~~g~~~~a~V~~~~~~--------~~~~V~l~~lg~~~~---~~~-------~~~~~lGd~V~V~I~~vD~~~ 579 (589)
+.+++.+. |+.++|.|+++... .+|+||++++.-.+. ... ...+++||.|+|+|.++|..+
T Consensus 76 ~~~~~~~~-Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (171)
T 1y14_B 76 AVVFKPFK-GEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQV 154 (171)
T ss_dssp EEEECCCT-TCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEET
T ss_pred EEEccCCC-CCEEEEEEEEEecCEEEEEecCeEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCC
Confidence 34566667 79999999996433 468899987742211 100 144999999999999999887
Q ss_pred CeE
Q 007798 580 DII 582 (589)
Q Consensus 580 ~~i 582 (589)
+.+
T Consensus 155 ~~~ 157 (171)
T 1y14_B 155 SSI 157 (171)
T ss_dssp TEE
T ss_pred CCc
Confidence 654
No 24
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=93.10 E-value=0.078 Score=51.84 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=44.3
Q ss_pred HHhcCCCCcEEEEEEEEEeeC--------eeEEEEeeccceeEE--------EEe--CccCCCCCEEEEEEEeeeCCCCe
Q 007798 520 FLRRQPKERQYRALILRFIKD--------RTAALLLVEVGLQAA--------AWV--SVGAQIGDEVEVKVEEAHPRDDI 581 (589)
Q Consensus 520 ~L~~~~~g~~~~a~V~~~~~~--------~~~~V~l~~lg~~~~--------~~~--~~~~~lGd~V~V~I~~vD~~~~~ 581 (589)
+++.+. |+.++|+|+++... .+|+||++++.-.+. ... ...+++||.|+|+|.++|+.++.
T Consensus 78 ~~~p~v-Gev~~G~V~~vt~fG~FVelg~~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~ 156 (215)
T 2b8k_G 78 VFKPFK-GEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSS 156 (215)
T ss_dssp EECCCT-TEEEEEEEEEEETTEEEEECTTSEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTE
T ss_pred eeccCC-CCEEEEEEEEEecceEEEEecCcEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCc
Confidence 455667 79999999996433 468899988742211 000 13489999999999999998765
Q ss_pred E
Q 007798 582 I 582 (589)
Q Consensus 582 i 582 (589)
+
T Consensus 157 i 157 (215)
T 2b8k_G 157 I 157 (215)
T ss_dssp E
T ss_pred c
Confidence 4
No 25
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.09 E-value=0.0026 Score=73.06 Aligned_cols=130 Identities=10% Similarity=0.151 Sum_probs=38.4
Q ss_pred CCCcccccccccchhhHHHHH--HHHHHHcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEE
Q 007798 453 LPGYVQFTSPIRRYMDLLAHY--QVKACLRGESPPFSAGQLEGMASIVNMQTRIARRLSNTSLRYWIIEFLRRQPKERQY 530 (589)
Q Consensus 453 l~~YthfTSPIRRY~DLivHr--qL~a~L~g~~~~~~~~~L~~i~~~~~~~~r~a~~aer~~~~~~~~~~L~~~~~g~~~ 530 (589)
.|...+++.|..++.|+|-+. .|+.+...-....+.++ +..+ +++.......+..++..+.. ..+..-.+ |+.|
T Consensus 596 ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-dG~v-~Is~~~~~~~~~a~~~i~~i-~~p~~~~v-G~i~ 671 (757)
T 1e3p_A 596 APRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-DGTI-YIGAADGPAAEAARATINGI-ANPTSPEV-GERI 671 (757)
T ss_dssp SCBCCCC------------------CTTCCCCCSCC----------CCCBSSHHHHCC----------------------
T ss_pred CceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-CceE-EEecCCHHHHHHHHHHHHHh-cchhhccc-ccEE
Confidence 588899999999999999776 56654432111111110 0000 00000000000001111110 01122344 7999
Q ss_pred EEEEEEEeeC---------eeEEEEeecc----ceeEEEEeCccCCCCCEEEEEEEeeeCCCCeEEEEEe
Q 007798 531 RALILRFIKD---------RTAALLLVEV----GLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587 (589)
Q Consensus 531 ~a~V~~~~~~---------~~~~V~l~~l----g~~~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~v 587 (589)
.|.|+++... .+|+||++++ .-+...+....+++||.|+|+|.++|+ ++.|+|...
T Consensus 672 ~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k 740 (757)
T 1e3p_A 672 LGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPV 740 (757)
T ss_dssp -CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC------
T ss_pred EEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEe
Confidence 9999984221 4677888887 433333444669999999999999999 899988754
No 26
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=92.25 E-value=0.048 Score=55.03 Aligned_cols=59 Identities=20% Similarity=0.081 Sum_probs=40.4
Q ss_pred CcEEEEEEEEEeeCeeEEEEeec-cceeEEE-----------EeCccCCCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 527 ERQYRALILRFIKDRTAALLLVE-VGLQAAA-----------WVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 527 g~~~~a~V~~~~~~~~~~V~l~~-lg~~~~~-----------~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
|+.+.|.|+++.. ...+|.+.+ .|.++.. .....+++||.|.|+|.++|+.++.|+|..
T Consensus 12 G~iv~G~V~~I~~-~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSl 82 (266)
T 3cw2_C 12 GEILIATVKQVFD-YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSL 82 (266)
T ss_dssp TCEEEEEEEECCS-SSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEES
T ss_pred CCEEEEEEEEEec-cEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEE
Confidence 7999999998532 222344432 1332221 112348999999999999999999999875
No 27
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=91.96 E-value=0.053 Score=51.01 Aligned_cols=64 Identities=13% Similarity=-0.022 Sum_probs=46.5
Q ss_pred HHHHhcCCCCcEEEEEEEEEeeC--------eeEEEEeeccceeE----------EEEeCccCCCCCEEEEEEEeeeCCC
Q 007798 518 IEFLRRQPKERQYRALILRFIKD--------RTAALLLVEVGLQA----------AAWVSVGAQIGDEVEVKVEEAHPRD 579 (589)
Q Consensus 518 ~~~L~~~~~g~~~~a~V~~~~~~--------~~~~V~l~~lg~~~----------~~~~~~~~~lGd~V~V~I~~vD~~~ 579 (589)
+.+++.+. |+.++|+|+++.+. .+|+|+++++.-.+ ..+.+..+++||.|+|+|.++|+..
T Consensus 77 ~ivf~p~~-Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~ 155 (172)
T 3h0g_G 77 AVLWRPFR-GEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDA 155 (172)
T ss_dssp EEEECCCT-TCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESS
T ss_pred EeeeccCC-CCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCC
Confidence 34566667 79999999986433 34889988774211 1122456999999999999999988
Q ss_pred CeE
Q 007798 580 DII 582 (589)
Q Consensus 580 ~~i 582 (589)
+.+
T Consensus 156 ~~~ 158 (172)
T 3h0g_G 156 TEI 158 (172)
T ss_dssp SCE
T ss_pred CCc
Confidence 765
No 28
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=91.89 E-value=0.039 Score=62.96 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCCcEEEEEEEEEee---------CeeEEEEeeccceeEEEEeCccCCCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 524 QPKERQYRALILRFIK---------DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 524 ~~~g~~~~a~V~~~~~---------~~~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
+. |+.|.|.|+++.. ..+|+||++++.-+...+....|++||.|+|+|.++|+ ++.|+|..
T Consensus 636 ~v-G~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~ 705 (726)
T 4aid_A 636 EV-GKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSM 705 (726)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cC-CcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEE
Confidence 44 7999999998522 14788999988655444555679999999999999998 78888864
No 29
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=90.30 E-value=0.24 Score=59.61 Aligned_cols=61 Identities=10% Similarity=-0.080 Sum_probs=44.8
Q ss_pred CcEEEEEEEEEeeC---------eeEEEEeeccceeE-EEEeCccCCCCCEEEEEEEeeeCCCCeEEEEEe
Q 007798 527 ERQYRALILRFIKD---------RTAALLLVEVGLQA-AAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587 (589)
Q Consensus 527 g~~~~a~V~~~~~~---------~~~~V~l~~lg~~~-~~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~v 587 (589)
|+.++|+|+++... ..|+||++++.-.. .......+++||.|+|+|.+||+.++.|+|+..
T Consensus 903 G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk 973 (1219)
T 3psi_A 903 GSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLL 973 (1219)
T ss_dssp TCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECC
T ss_pred CCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEec
Confidence 79999999995332 35666666654332 112234589999999999999999999999753
No 30
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=89.97 E-value=0.058 Score=61.65 Aligned_cols=62 Identities=23% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCCCcEEEEEEEEEee---------CeeEEEEeeccceeEEEEeCccCCCCCEEEEEEEeeeCCCCeEEEEEe
Q 007798 524 QPKERQYRALILRFIK---------DRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587 (589)
Q Consensus 524 ~~~g~~~~a~V~~~~~---------~~~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~v 587 (589)
+. |+.|.|.|+++.. ..+|+||++++.-+...+....+++||.|+|+|.++|+ ++.|+|...
T Consensus 626 ~v-G~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k 696 (723)
T 3cdi_A 626 EV-GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIK 696 (723)
T ss_dssp -------------------------------------------------------------------------
T ss_pred hc-CcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEE
Confidence 44 7999999998422 14688888887654444445669999999999999999 899988754
No 31
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=87.64 E-value=1.2 Score=45.08 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=41.6
Q ss_pred CcEEEEEEEEEeeCeeEEE-EeeccceeEEEEe---CccCCCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 527 ERQYRALILRFIKDRTAAL-LLVEVGLQAAAWV---SVGAQIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 527 g~~~~a~V~~~~~~~~~~V-~l~~lg~~~~~~~---~~~~~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
|+..+|+|.++.. ..++| .+. =|+++..+. ...+++||+|+++|.++|+.++.|+|..
T Consensus 153 G~~V~g~V~~i~~-~G~fV~~i~-~g~~Glih~SEl~~~l~~Gd~v~~~V~~id~~d~kI~LSl 214 (285)
T 3go5_A 153 NQNWPAIVYRLKL-SGTFVYLPE-NNMLGFIHPSERYAEPRLGQVLDARVIGFREVDRTLNLSL 214 (285)
T ss_dssp TCEEEEEEEEEET-TEEEEEETT-TTEEEEECGGGCSSCCCTTCEEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEEEEEeC-CcEEEEEeC-CCeEEEEEHHHccccCCCCCEEEEEEEEEECCCCeEEEEe
Confidence 7999999998543 22334 332 244444332 2468999999999999999999999874
No 32
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=86.04 E-value=0.14 Score=60.48 Aligned_cols=61 Identities=10% Similarity=-0.080 Sum_probs=0.0
Q ss_pred CcEEEEEEEEEeeC---------eeEEEEeeccceeE-EEEeCccCCCCCEEEEEEEeeeCCCCeEEEEEe
Q 007798 527 ERQYRALILRFIKD---------RTAALLLVEVGLQA-AAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 587 (589)
Q Consensus 527 g~~~~a~V~~~~~~---------~~~~V~l~~lg~~~-~~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~v 587 (589)
|..+.|+|+++... ..|+||++++.-.. .......+++||.|+|+|.+||+.++.|+|+..
T Consensus 906 G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk 976 (1030)
T 3psf_A 906 GSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLL 976 (1030)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEec
Confidence 78999999885321 46778888775443 222235699999999999999999999998754
No 33
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=64.01 E-value=11 Score=36.23 Aligned_cols=59 Identities=14% Similarity=0.032 Sum_probs=37.7
Q ss_pred CcEEEEEEEEEeeCeeEEEEeec-------cceeEEE-------------EeCccCCCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 527 ERQYRALILRFIKDRTAALLLVE-------VGLQAAA-------------WVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 527 g~~~~a~V~~~~~~~~~~V~l~~-------lg~~~~~-------------~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
|....|.|+++. ...+.|.|.. .++++.. .....|++||.|.++|.++|.....+.|..
T Consensus 82 GDvV~G~V~~v~-~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~LS~ 160 (209)
T 2nn6_I 82 GAIVTCKVSSIN-SRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTT 160 (209)
T ss_dssp TCEEEEEEEEEC-SSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEEEEEE-CceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEEEEE
Confidence 799999999853 2333344421 1222211 112238999999999999998777777754
No 34
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=58.02 E-value=32 Score=28.03 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=39.4
Q ss_pred cEEEEEEEEEeeCeeEEEEeeccceeEEEEe-------CccCCCCCEEEEEEEeeeCCCCeEEEE
Q 007798 528 RQYRALILRFIKDRTAALLLVEVGLQAAAWV-------SVGAQIGDEVEVKVEEAHPRDDIIYLK 585 (589)
Q Consensus 528 ~~~~a~V~~~~~~~~~~V~l~~lg~~~~~~~-------~~~~~lGd~V~V~I~~vD~~~~~i~~~ 585 (589)
-+.+|+|+..+..+...|.+++ |....++. ...+.+||.|.|.+..-|+.++.|-+.
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~n-G~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELEN-GHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETT-SCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEEEeCC-CCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEEE
Confidence 4689999986655666666654 43332222 234789999999999988888877654
No 35
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=53.95 E-value=67 Score=26.94 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=41.9
Q ss_pred CcEEEEEEEEEeeCeeEEEEeecc-ceeEEE------EeCc--cC---CCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 527 ERQYRALILRFIKDRTAALLLVEV-GLQAAA------WVSV--GA---QIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 527 g~~~~a~V~~~~~~~~~~V~l~~l-g~~~~~------~~~~--~~---~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
|+..+|+|. ++++...|.|.++ |+++.. +..+ .+ -.|-.|+|+|.++|-. -||+..
T Consensus 33 g~VtkGiVy--~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkLVGKtIkVqVIRvD~l--YIDV~~ 100 (102)
T 1jjg_A 33 GSVHEGIVY--FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERLVGRVIKTRVVRADGL--YVDLRR 100 (102)
T ss_dssp SCEEEEEEE--EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHHTTCEEEEEEEEECSS--EEEEEC
T ss_pred CceEeeEEE--EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHhcCceEEEEEEEeccE--EEEEEE
Confidence 688899997 4788878899999 888753 1111 11 2899999999999987 777653
No 36
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=53.54 E-value=17 Score=37.79 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=38.6
Q ss_pred cCCCCcEEEEEEEEEeeCeeEEEEeeccceeEEEEe-----CccCCCCCEEEEEEEeeeCCCC--eEEEE
Q 007798 523 RQPKERQYRALILRFIKDRTAALLLVEVGLQAAAWV-----SVGAQIGDEVEVKVEEAHPRDD--IIYLK 585 (589)
Q Consensus 523 ~~~~g~~~~a~V~~~~~~~~~~V~l~~lg~~~~~~~-----~~~~~lGd~V~V~I~~vD~~~~--~i~~~ 585 (589)
.+. |+..+|+|.++.+ +..+|-+. +.++.... +..|++||+|+|.|.+|+...+ +|-+.
T Consensus 132 ~~~-GeIV~G~V~ri~~-~~v~VDlG--k~EgiLp~sE~ip~E~~~vGD~Vkv~V~~V~~~~kg~~I~LS 197 (344)
T 1hh2_P 132 ELK-GTVTTAEVIRVMG-EWADIRIG--KLETRLPKKEWIPGEEIKAGDLVKVYIIDVVKTTKGPKILVS 197 (344)
T ss_dssp CCT-TCEEEEEEEEECS-SEEEEEET--TEEEEEEGGGSCTTCCCCTTCEEEEEEEEEEEETTEEEEEEE
T ss_pred hcC-CCEEEEEEEEEec-CcEEEEeC--CeEEEEeHHHcCCCcCCCCCCEEEEEEEEEEcCCCCcEEEEE
Confidence 344 7999999998543 33333332 34544332 2459999999999999997654 55554
No 37
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=51.13 E-value=22 Score=33.20 Aligned_cols=53 Identities=11% Similarity=0.012 Sum_probs=31.8
Q ss_pred CcEEEEEEEEEeeCeeEEEEeecc---------ceeEEEE-----------eCccCCCCCEEEEEEEeeeCCCCeEEEE
Q 007798 527 ERQYRALILRFIKDRTAALLLVEV---------GLQAAAW-----------VSVGAQIGDEVEVKVEEAHPRDDIIYLK 585 (589)
Q Consensus 527 g~~~~a~V~~~~~~~~~~V~l~~l---------g~~~~~~-----------~~~~~~lGd~V~V~I~~vD~~~~~i~~~ 585 (589)
|....|.|+++. +..+.|.|... ++++..+ ....|++||.|.++|.+ +.+.|.
T Consensus 58 GdiV~G~V~~V~-~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~LS 130 (179)
T 3m7n_A 58 GDVVLGRVVDLR-NSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRLS 130 (179)
T ss_dssp TCEEEEEEEEEC-SSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEEE
T ss_pred CCEEEEEEEEEe-CCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEEE
Confidence 588999999853 22333444321 2222221 12358999999999997 555554
No 38
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=49.29 E-value=19 Score=35.53 Aligned_cols=59 Identities=14% Similarity=-0.072 Sum_probs=37.2
Q ss_pred CcEEEEEEEEEeeC---------eeEEEEeeccceeEE---EEeCccCCCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 527 ERQYRALILRFIKD---------RTAALLLVEVGLQAA---AWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 527 g~~~~a~V~~~~~~---------~~~~V~l~~lg~~~~---~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
|....|.|+++... ..|+++++++.-... ......+++||.|.++|.+++.. +.+.|..
T Consensus 75 GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~-~~i~LS~ 145 (251)
T 2je6_I 75 NDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRS-IDPVLSV 145 (251)
T ss_dssp TCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETT-EEEEEEC
T ss_pred CCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCC-CcEEEEE
Confidence 78999999985322 234444444321100 11123689999999999999964 5676653
No 39
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=48.35 E-value=24 Score=34.33 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=38.1
Q ss_pred CcEEEEEEEEEeeC---------eeEEEEeecccee-EEEEeCccCCCCCEEEEEEEeeeCCCCeEEEEE
Q 007798 527 ERQYRALILRFIKD---------RTAALLLVEVGLQ-AAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKE 586 (589)
Q Consensus 527 g~~~~a~V~~~~~~---------~~~~V~l~~lg~~-~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~~ 586 (589)
|....|.|+++... ..|+++++++.-+ ........+++||.|.++|.+++.. +.+.|..
T Consensus 58 GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~-~~i~LS~ 126 (229)
T 2ba0_A 58 GDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPK-MKVTLTM 126 (229)
T ss_dssp TCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTT-CCEEEEC
T ss_pred CCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCC-CcEEEEE
Confidence 78999999995322 2345555544311 0111124589999999999999974 5677653
No 40
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=33.27 E-value=31 Score=33.56 Aligned_cols=58 Identities=17% Similarity=0.007 Sum_probs=36.1
Q ss_pred CcEEEEEEEEEeeC---------eeEEEEeecccee----EEEEeCccCCCCCEEEEEEEeeeCCCCeEEEE
Q 007798 527 ERQYRALILRFIKD---------RTAALLLVEVGLQ----AAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK 585 (589)
Q Consensus 527 g~~~~a~V~~~~~~---------~~~~V~l~~lg~~----~~~~~~~~~~lGd~V~V~I~~vD~~~~~i~~~ 585 (589)
|....|.|+++... ..|+++++++.-. ........+++||.|.++|.+++.. +.+.|.
T Consensus 67 GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~-~~i~LS 137 (235)
T 2z0s_A 67 GDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLLT 137 (235)
T ss_dssp TCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEEE
T ss_pred CCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCC-CcEEEE
Confidence 78999999985322 2344444443210 0001123689999999999999964 466665
No 41
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=28.54 E-value=43 Score=26.29 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=30.6
Q ss_pred EEEEEEEEEeeCeeEEEEeeccceeEEEEeC-------ccCCCCCEEEEEEEeeeCCCCeEE
Q 007798 529 QYRALILRFIKDRTAALLLVEVGLQAAAWVS-------VGAQIGDEVEVKVEEAHPRDDIIY 583 (589)
Q Consensus 529 ~~~a~V~~~~~~~~~~V~l~~lg~~~~~~~~-------~~~~lGd~V~V~I~~vD~~~~~i~ 583 (589)
+..|.|+.....+...|..++ |-...++.. ....+||.|.|.+..-|..++.|.
T Consensus 7 ~~~G~Vi~~lg~~~y~V~~~~-g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~ 67 (71)
T 1ah9_A 7 EMQGTVLETLPNTMFRVELEN-GHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp ECCEEEEEECSSSEEEEEETT-SCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEEEEEEeCCcEEEEEECC-CCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEE
Confidence 457888875543555565543 433333221 224599999998765454444443
No 42
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=27.83 E-value=67 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.4
Q ss_pred EEEEEEEECCCCeEeEEEEEEEE
Q 007798 277 AVTVSVVLHSDGSIAEYSVDNSI 299 (589)
Q Consensus 277 AlS~~~~ld~~G~I~~~~~~~s~ 299 (589)
.+.+.+.||++|+|.+.++..+.
T Consensus 26 ~V~v~~~i~~~G~v~~~~v~~ss 48 (90)
T 1u07_A 26 QVKVKFDVTPDGRVDNVQILSAK 48 (90)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecC
Confidence 57899999999999998876653
No 43
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=27.45 E-value=1.3e+02 Score=29.66 Aligned_cols=61 Identities=10% Similarity=0.026 Sum_probs=37.9
Q ss_pred cCCCCcEEEEEEEE----EeeCeeEEEEeec--cceeEEEEe-----CccCCCCCEEEEEEEeeeCCC--CeEEEE
Q 007798 523 RQPKERQYRALILR----FIKDRTAALLLVE--VGLQAAAWV-----SVGAQIGDEVEVKVEEAHPRD--DIIYLK 585 (589)
Q Consensus 523 ~~~~g~~~~a~V~~----~~~~~~~~V~l~~--lg~~~~~~~-----~~~~~lGd~V~V~I~~vD~~~--~~i~~~ 585 (589)
.+. |+...|+|.+ +. .+...|-+.. -+.++.... +..|++||+|++.|.+|+... .+|-+.
T Consensus 5 ~r~-GeIVtG~V~r~~~~v~-~~~ViVdlG~~~~k~EgiLP~~Eqip~E~~~~GDrIkayV~~V~~~~~gpqIiLS 78 (251)
T 2asb_A 5 TRE-GEIVAGVIQRDSRANA-RGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLS 78 (251)
T ss_dssp CCT-TCEEEEEEECCHHHHH-TTCEEEEECSSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred hcC-CCEEEEEEEEcccccc-CCeEEEEeCCCCcceEEEEcHHHcCCCccCCCCCEEEEEEEEEEcCCCCCEEEEE
Confidence 344 6999999986 32 2333333321 013544322 346999999999999999764 566654
No 44
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=25.41 E-value=1.2e+02 Score=31.62 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=38.3
Q ss_pred hcCCCCcEEEEEEEE----EeeCeeEEEEeec--cceeEEEEe-----CccCCCCCEEEEEEEeeeCCC--CeEEEE
Q 007798 522 RRQPKERQYRALILR----FIKDRTAALLLVE--VGLQAAAWV-----SVGAQIGDEVEVKVEEAHPRD--DIIYLK 585 (589)
Q Consensus 522 ~~~~~g~~~~a~V~~----~~~~~~~~V~l~~--lg~~~~~~~-----~~~~~lGd~V~V~I~~vD~~~--~~i~~~ 585 (589)
+.+. |+...|+|.+ +.+ +...|-+.. -+.++.... +..|++||+|+|.|.+|+... .+|-+.
T Consensus 127 ~~r~-GeIVtG~V~r~~~~v~~-~~v~VdLG~~~~k~EgiLP~~EqiP~E~~~~GDrVkvyV~~V~~~~kgpqI~LS 201 (366)
T 1k0r_A 127 STRE-GEIVAGVIQRDSRANAR-GLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLS 201 (366)
T ss_dssp CCCT-TCEEEEEEECCHHHHHT-TCEEEEECCSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred HhcC-CCEEEEEEEEccccccC-CeEEEEeCCCccceEEEEcHHHcCCCccCCCCCEEEEEEEEEecCCCccEEEEE
Confidence 4555 7999999986 322 232333321 014544322 346999999999999999764 345543
No 45
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=23.68 E-value=99 Score=33.77 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=36.4
Q ss_pred CcEEEEEEEEEeeC-----------eeEEEEeeccceeEE---------EEeCccCCCCCEEEEEEEeeeCCCCe
Q 007798 527 ERQYRALILRFIKD-----------RTAALLLVEVGLQAA---------AWVSVGAQIGDEVEVKVEEAHPRDDI 581 (589)
Q Consensus 527 g~~~~a~V~~~~~~-----------~~~~V~l~~lg~~~~---------~~~~~~~~lGd~V~V~I~~vD~~~~~ 581 (589)
|..|.|.|.++... ..|+++++++.-... ......++.||.|.|+|.+...-...
T Consensus 46 GnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KG 120 (517)
T 2bx2_L 46 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKG 120 (517)
T ss_dssp TCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCC
T ss_pred CCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCC
Confidence 79999999975332 247778877632210 01113488999999999997755444
No 46
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=23.10 E-value=82 Score=26.12 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.0
Q ss_pred EEEEEEEECCCCeEeEEEEEEE
Q 007798 277 AVTVSVVLHSDGSIAEYSVDNS 298 (589)
Q Consensus 277 AlS~~~~ld~~G~I~~~~~~~s 298 (589)
.+.+.+.||++|+|.+.++..+
T Consensus 41 ~V~v~f~I~~~G~v~~~~v~~s 62 (106)
T 2k9k_A 41 FVTLSFTIDTTGKAVDINVVDA 62 (106)
T ss_dssp EEEEEEEEETTTEEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEEEc
Confidence 4789999999999999887665
No 47
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=23.03 E-value=1.1e+02 Score=26.51 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=33.4
Q ss_pred cEEEEEEEEEeeCeeEEEEeeccceeEEEEeC------ccCCCCCEEEEEEEeeeCCCCeEE
Q 007798 528 RQYRALILRFIKDRTAALLLVEVGLQAAAWVS------VGAQIGDEVEVKVEEAHPRDDIIY 583 (589)
Q Consensus 528 ~~~~a~V~~~~~~~~~~V~l~~lg~~~~~~~~------~~~~lGd~V~V~I~~vD~~~~~i~ 583 (589)
.+..|.|+.....+...|.+++ |....++.. ....+||.|.|.+..-|..++.|.
T Consensus 32 ~e~~G~Vi~~lgn~~y~V~~~d-G~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~ 92 (117)
T 2oqk_A 32 GQEYGQVQRMLGNGRLDAYCFD-GQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDII 92 (117)
T ss_dssp TEEEEEEEEEEETTEEEEEETT-SCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEE
T ss_pred CEEEEEEEEEcCCCEEEEEeCC-CCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEE
Confidence 4568999976554555565554 544333332 235599999998875454444444
No 48
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=22.53 E-value=31 Score=21.60 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=11.2
Q ss_pred cccchhhHHHHHH
Q 007798 462 PIRRYMDLLAHYQ 474 (589)
Q Consensus 462 PIRRY~DLivHrq 474 (589)
-+||+.|.+|-||
T Consensus 10 qlrr~gdkln~rq 22 (25)
T 3mqp_B 10 QLRRFGDKLNFRQ 22 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 4799999999887
No 49
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=22.51 E-value=2.1e+02 Score=21.75 Aligned_cols=46 Identities=26% Similarity=0.404 Sum_probs=30.4
Q ss_pred CcEEEEEEEEEeeCeeEEEEeeccceeEEEEeCccCCCCCEEEEEEEeeeC
Q 007798 527 ERQYRALILRFIKDRTAALLLVEVGLQAAAWVSVGAQIGDEVEVKVEEAHP 577 (589)
Q Consensus 527 g~~~~a~V~~~~~~~~~~V~l~~lg~~~~~~~~~~~~lGd~V~V~I~~vD~ 577 (589)
|+.++..|.+...++.|..+++ |....+. ..-+||+|.++|.++..
T Consensus 14 ~~~~~~~I~~l~~~G~Gva~~~--g~~vfV~---~alPGE~V~v~i~k~kk 59 (68)
T 1yez_A 14 GEVYDVTIQDIARQGDGIARIE--GFVIFVP---GTKVGDEVRIKVERVLP 59 (68)
T ss_dssp TEEEEEECCEEETTTEEEEEET--TEEEEEE---SCCTTCEEEEEEEEECS
T ss_pred CCEEEEEEEEcCCCccEEEEEC--CEEEECc---CCCCCCEEEEEEEEecC
Confidence 4667777776555577776665 3332222 23689999999998754
Done!