Query 007799
Match_columns 589
No_of_seqs 510 out of 2567
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 15:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0571 Asparagine synthase (g 100.0 2E-145 3E-150 1097.9 38.3 538 1-555 1-541 (543)
2 PLN02549 asparagine synthase ( 100.0 5E-135 1E-139 1120.0 55.7 557 1-557 1-557 (578)
3 PTZ00077 asparagine synthetase 100.0 5E-135 1E-139 1122.9 54.2 556 1-556 1-570 (586)
4 PRK09431 asnB asparagine synth 100.0 3E-131 6E-136 1089.2 53.1 548 1-554 1-554 (554)
5 TIGR03104 trio_amidotrans aspa 100.0 2.9E-94 6.4E-99 804.1 45.2 472 1-505 1-564 (589)
6 COG0367 AsnB Asparagine syntha 100.0 7.6E-92 1.6E-96 772.8 37.1 521 1-552 1-540 (542)
7 TIGR03108 eps_aminotran_1 exos 100.0 8.8E-89 1.9E-93 769.5 45.0 477 1-508 1-607 (628)
8 TIGR01536 asn_synth_AEB aspara 100.0 3.3E-87 7.2E-92 732.6 44.7 429 4-453 1-467 (467)
9 KOG0573 Asparagine synthase [A 100.0 2.5E-43 5.4E-48 359.4 26.2 429 1-457 1-500 (520)
10 cd01991 Asn_Synthase_B_C The C 100.0 2.4E-41 5.2E-46 344.5 18.0 227 211-456 1-269 (269)
11 cd00712 AsnB Glutamine amidotr 100.0 2.8E-40 6.2E-45 326.9 24.1 189 2-192 1-220 (220)
12 PF00733 Asn_synthase: Asparag 100.0 1.4E-39 3E-44 327.6 17.8 225 209-450 1-255 (255)
13 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 1.5E-37 3.2E-42 297.0 18.3 168 1-178 1-179 (181)
14 PRK08525 amidophosphoribosyltr 100.0 3.1E-35 6.6E-40 317.0 27.3 217 1-223 1-273 (445)
15 cd00714 GFAT Glutamine amidotr 100.0 2.2E-35 4.8E-40 290.4 20.8 172 2-181 1-214 (215)
16 PRK07631 amidophosphoribosyltr 100.0 3.1E-34 6.7E-39 309.0 27.1 231 1-243 11-298 (475)
17 PRK09123 amidophosphoribosyltr 100.0 5.3E-34 1.1E-38 308.7 28.4 234 1-244 21-311 (479)
18 PRK06388 amidophosphoribosyltr 100.0 3.2E-34 6.8E-39 309.3 25.0 227 1-234 19-302 (474)
19 PRK07272 amidophosphoribosyltr 100.0 1.4E-33 3.1E-38 304.5 29.3 182 1-188 11-235 (484)
20 PRK07349 amidophosphoribosyltr 100.0 8.8E-34 1.9E-38 306.8 27.7 228 1-233 33-322 (500)
21 PRK08341 amidophosphoribosyltr 100.0 6.4E-34 1.4E-38 304.8 25.6 226 1-235 4-283 (442)
22 PRK06781 amidophosphoribosyltr 100.0 4.9E-33 1.1E-37 300.2 28.8 235 1-245 11-300 (471)
23 PRK07847 amidophosphoribosyltr 100.0 1.9E-33 4E-38 304.9 21.9 228 1-234 23-313 (510)
24 PLN02440 amidophosphoribosyltr 100.0 7.2E-33 1.6E-37 300.9 23.3 180 1-186 1-222 (479)
25 cd00715 GPATase_N Glutamine am 100.0 1.9E-32 4E-37 276.3 22.8 182 2-189 1-225 (252)
26 PRK00331 glucosamine--fructose 100.0 8.9E-33 1.9E-37 311.9 22.0 179 1-187 1-221 (604)
27 PRK05793 amidophosphoribosyltr 100.0 1.3E-31 2.7E-36 290.5 27.5 182 1-187 14-237 (469)
28 cd01907 GlxB Glutamine amidotr 100.0 2.9E-32 6.2E-37 273.7 18.1 174 2-181 1-248 (249)
29 TIGR01135 glmS glucosamine--fr 100.0 5.9E-32 1.3E-36 305.4 21.0 179 2-188 1-221 (607)
30 PRK09246 amidophosphoribosyltr 100.0 8E-32 1.7E-36 294.6 21.2 179 1-184 1-233 (501)
31 cd01909 betaLS_CarA_N Glutamin 100.0 7.8E-32 1.7E-36 259.0 16.7 129 60-193 44-199 (199)
32 cd01910 Wali7 This domain is p 100.0 6.5E-31 1.4E-35 253.4 20.6 138 61-201 64-209 (224)
33 TIGR01134 purF amidophosphorib 100.0 1E-30 2.2E-35 282.1 23.6 226 2-233 1-283 (442)
34 PTZ00295 glucosamine-fructose- 100.0 1.3E-30 2.7E-35 295.3 20.4 183 1-191 24-255 (640)
35 cd00352 Gn_AT_II Glutamine ami 100.0 3.5E-30 7.7E-35 254.2 21.0 179 2-180 1-220 (220)
36 PF13537 GATase_7: Glutamine a 100.0 7.7E-30 1.7E-34 229.8 9.3 119 48-166 1-125 (125)
37 PTZ00394 glucosamine-fructose- 100.0 2.6E-28 5.7E-33 275.7 20.7 183 1-186 1-275 (670)
38 PLN02981 glucosamine:fructose- 100.0 5.8E-28 1.3E-32 274.0 19.4 184 1-187 1-273 (680)
39 COG0034 PurF Glutamine phospho 99.9 1.6E-25 3.6E-30 232.0 24.9 237 1-246 4-301 (470)
40 PF13522 GATase_6: Glutamine a 99.9 1.6E-26 3.6E-31 210.2 15.1 127 33-160 1-133 (133)
41 KOG0572 Glutamine phosphoribos 99.9 2.3E-24 4.9E-29 216.5 18.5 182 1-186 1-236 (474)
42 COG0449 GlmS Glucosamine 6-pho 99.9 2.7E-23 5.8E-28 225.2 19.0 178 1-187 1-218 (597)
43 TIGR03442 conserved hypothetic 99.8 8.6E-18 1.9E-22 168.7 16.1 174 1-188 1-247 (251)
44 cd01908 YafJ Glutamine amidotr 99.7 5.9E-16 1.3E-20 156.7 14.8 134 43-184 81-256 (257)
45 PF00310 GATase_2: Glutamine a 99.7 1.6E-15 3.5E-20 159.1 18.5 111 43-161 196-361 (361)
46 KOG1268 Glucosamine 6-phosphat 99.6 1.7E-15 3.7E-20 158.2 14.6 186 1-186 1-278 (670)
47 cd00713 GltS Glutamine amidotr 99.6 3.2E-15 6.9E-20 157.8 16.0 134 43-184 202-394 (413)
48 PF12481 DUF3700: Aluminium in 99.5 2.2E-13 4.8E-18 129.3 16.7 131 68-201 75-213 (228)
49 cd01996 Alpha_ANH_like_III Thi 99.4 7.2E-13 1.6E-17 123.6 12.1 127 227-365 3-132 (154)
50 TIGR03573 WbuX N-acetyl sugar 99.3 1.1E-11 2.4E-16 130.5 13.5 118 227-355 61-180 (343)
51 COG0067 GltB Glutamate synthas 99.1 5.2E-10 1.1E-14 116.1 13.3 133 43-186 203-362 (371)
52 PRK11750 gltB glutamate syntha 99.0 3.3E-09 7.2E-14 125.6 12.7 133 43-183 213-403 (1485)
53 TIGR00268 conserved hypothetic 98.9 6.6E-09 1.4E-13 105.0 12.5 116 220-352 7-124 (252)
54 cd00553 NAD_synthase NAD+ synt 98.9 1.2E-08 2.7E-13 102.8 12.9 132 209-353 9-147 (248)
55 PF13230 GATase_4: Glutamine a 98.9 1E-08 2.2E-13 104.4 12.0 139 43-188 72-254 (271)
56 TIGR00552 nadE NAD+ synthetase 98.9 5.3E-09 1.1E-13 105.6 9.8 134 206-353 5-145 (250)
57 PRK00876 nadE NAD synthetase; 98.9 1.8E-08 3.8E-13 104.6 12.1 81 205-296 14-98 (326)
58 PRK13980 NAD synthetase; Provi 98.8 2.3E-08 5E-13 101.7 12.2 133 208-353 15-149 (265)
59 COG1606 ATP-utilizing enzymes 98.8 2.8E-08 6E-13 97.1 11.7 111 224-350 16-128 (269)
60 PRK14561 hypothetical protein; 98.8 2.5E-08 5.3E-13 96.7 10.7 106 227-348 2-107 (194)
61 cd01990 Alpha_ANH_like_I This 98.8 2.3E-08 5E-13 97.6 9.7 110 228-352 1-112 (202)
62 PRK00143 mnmA tRNA-specific 2- 98.7 1.2E-07 2.5E-12 100.2 11.3 113 227-349 2-130 (346)
63 cd01998 tRNA_Me_trans tRNA met 98.6 1.9E-07 4.2E-12 98.7 11.6 113 227-349 1-127 (349)
64 cd01993 Alpha_ANH_like_II This 98.6 2.1E-07 4.5E-12 89.2 10.8 117 227-350 1-121 (185)
65 PF06508 QueC: Queuosine biosy 98.6 2.6E-07 5.7E-12 90.5 11.5 156 228-411 2-174 (209)
66 PRK11106 queuosine biosynthesi 98.6 2.3E-07 4.9E-12 92.0 10.7 146 227-400 3-162 (231)
67 COG0603 Predicted PP-loop supe 98.6 9.1E-08 2E-12 92.8 7.4 116 228-354 5-133 (222)
68 COG0482 TrmU Predicted tRNA(5- 98.6 2.6E-07 5.7E-12 95.7 10.7 111 225-345 3-126 (356)
69 PRK14665 mnmA tRNA-specific 2- 98.6 2.2E-07 4.8E-12 98.1 10.1 113 223-346 3-124 (360)
70 PF03054 tRNA_Me_trans: tRNA m 98.5 1.4E-07 3.1E-12 99.0 7.3 114 227-350 2-131 (356)
71 TIGR00364 exsB protein. This p 98.5 9E-07 1.9E-11 86.4 12.0 144 229-400 2-158 (201)
72 PRK04527 argininosuccinate syn 98.5 4.8E-07 1E-11 96.0 10.7 108 226-344 3-118 (400)
73 PTZ00323 NAD+ synthase; Provis 98.5 2.3E-06 4.9E-11 87.9 13.5 138 209-354 28-181 (294)
74 PRK14664 tRNA-specific 2-thiou 98.4 1.7E-06 3.6E-11 91.4 12.0 112 225-347 5-120 (362)
75 cd01712 ThiI ThiI is required 98.4 1.7E-06 3.6E-11 82.6 11.0 109 227-347 1-115 (177)
76 PRK00509 argininosuccinate syn 98.4 1.2E-06 2.6E-11 93.2 10.8 109 227-345 4-119 (399)
77 TIGR00420 trmU tRNA (5-methyla 98.4 1.3E-06 2.9E-11 92.2 10.8 109 227-345 2-127 (352)
78 TIGR00884 guaA_Cterm GMP synth 98.4 1.8E-06 3.9E-11 89.6 11.2 116 218-348 10-130 (311)
79 PF02540 NAD_synthase: NAD syn 98.4 2.7E-06 5.9E-11 85.3 11.5 134 208-354 3-139 (242)
80 PRK13981 NAD synthetase; Provi 98.3 3.4E-06 7.4E-11 94.6 12.5 138 207-355 260-406 (540)
81 PRK00919 GMP synthase subunit 98.3 3.1E-06 6.8E-11 87.4 11.0 124 209-348 6-132 (307)
82 PRK08349 hypothetical protein; 98.3 3.9E-06 8.4E-11 81.7 9.7 111 227-348 2-118 (198)
83 cd01999 Argininosuccinate_Synt 98.2 6.4E-06 1.4E-10 87.7 11.3 108 228-345 1-116 (385)
84 PLN00200 argininosuccinate syn 98.2 7E-06 1.5E-10 87.6 11.0 111 226-345 6-123 (404)
85 PRK00768 nadE NAD synthetase; 98.2 1.1E-05 2.4E-10 81.5 11.7 142 209-354 20-170 (268)
86 PF09147 DUF1933: Domain of un 98.2 8.4E-06 1.8E-10 75.1 9.4 118 60-182 41-186 (201)
87 PRK13820 argininosuccinate syn 98.2 9.7E-06 2.1E-10 86.3 11.2 110 226-345 3-119 (394)
88 TIGR02432 lysidine_TilS_N tRNA 98.2 9.1E-06 2E-10 78.3 9.7 109 227-349 1-113 (189)
89 PRK10696 tRNA 2-thiocytidine b 98.2 2.4E-05 5.1E-10 79.5 13.1 132 208-349 10-145 (258)
90 PRK00074 guaA GMP synthase; Re 98.1 1.3E-05 2.8E-10 89.0 11.6 127 208-348 199-329 (511)
91 cd01986 Alpha_ANH_like Adenine 98.1 1.1E-05 2.3E-10 69.9 8.6 76 228-350 1-76 (103)
92 COG0037 MesJ tRNA(Ile)-lysidin 98.1 1.8E-05 3.9E-10 81.8 10.6 126 209-349 5-134 (298)
93 cd01997 GMP_synthase_C The C-t 98.1 1.2E-05 2.6E-10 82.8 9.0 108 228-348 2-113 (295)
94 PLN02347 GMP synthetase 98.1 1.6E-05 3.5E-10 88.2 10.6 122 215-349 219-349 (536)
95 PRK01565 thiamine biosynthesis 98.0 1.8E-05 3.8E-10 85.2 9.6 111 223-349 174-293 (394)
96 cd01992 PP-ATPase N-terminal d 98.0 1.9E-05 4.2E-10 75.6 8.5 104 227-348 1-109 (185)
97 TIGR00032 argG argininosuccina 98.0 3.6E-05 7.8E-10 82.3 10.3 108 227-345 1-116 (394)
98 PRK08384 thiamine biosynthesis 97.9 5.1E-05 1.1E-09 80.8 10.7 112 223-348 178-297 (381)
99 PRK02628 nadE NAD synthetase; 97.9 8E-05 1.7E-09 85.7 12.6 144 207-356 341-495 (679)
100 TIGR00342 thiazole biosynthesi 97.9 3.9E-05 8.4E-10 82.0 9.4 111 224-348 171-288 (371)
101 COG2117 Predicted subunit of t 97.9 4.3E-05 9.2E-10 69.7 8.1 62 227-298 2-63 (198)
102 KOG2805 tRNA (5-methylaminomet 97.9 6.5E-05 1.4E-09 75.5 9.8 118 226-353 6-139 (377)
103 cd01995 ExsB ExsB is a transcr 97.9 6.1E-05 1.3E-09 71.3 8.9 87 227-348 1-89 (169)
104 TIGR03679 arCOG00187 arCOG0018 97.8 0.0001 2.2E-09 72.9 9.9 88 230-346 2-97 (218)
105 cd01994 Alpha_ANH_like_IV This 97.8 0.00016 3.4E-09 70.2 10.3 91 228-347 2-100 (194)
106 PF01171 ATP_bind_3: PP-loop f 97.8 0.00011 2.5E-09 70.4 9.1 104 227-348 1-109 (182)
107 PRK01269 tRNA s(4)U8 sulfurtra 97.7 0.00013 2.8E-09 80.7 10.1 111 224-349 176-294 (482)
108 cd01713 PAPS_reductase This do 97.7 0.00012 2.7E-09 68.5 8.2 115 227-350 1-120 (173)
109 COG0171 NadE NAD synthase [Coe 97.6 0.00075 1.6E-08 68.3 13.0 140 208-354 6-155 (268)
110 PF00764 Arginosuc_synth: Argi 97.6 0.00027 5.8E-09 74.9 10.2 109 230-348 2-121 (388)
111 PRK05370 argininosuccinate syn 97.6 0.00048 1E-08 73.6 11.8 118 220-348 6-138 (447)
112 PRK05253 sulfate adenylyltrans 97.6 0.00082 1.8E-08 69.5 12.4 109 226-348 28-140 (301)
113 PF02568 ThiI: Thiamine biosyn 97.5 0.00027 5.8E-09 68.4 7.8 108 225-346 3-119 (197)
114 COG1365 Predicted ATPase (PP-l 97.5 0.00067 1.5E-08 64.8 9.8 122 209-354 34-170 (255)
115 COG0121 Predicted glutamine am 97.4 0.00038 8.1E-09 69.9 7.9 42 43-84 71-116 (252)
116 COG0367 AsnB Asparagine syntha 97.4 0.00012 2.6E-09 81.8 4.7 91 385-487 419-511 (542)
117 PRK08576 hypothetical protein; 97.4 0.0012 2.5E-08 71.6 11.7 123 209-347 216-342 (438)
118 PRK10660 tilS tRNA(Ile)-lysidi 97.3 0.0014 3.1E-08 71.4 10.8 76 216-296 6-85 (436)
119 COG0137 ArgG Argininosuccinate 97.3 0.0027 5.9E-08 66.2 12.0 112 225-348 4-128 (403)
120 PLN02339 NAD+ synthase (glutam 97.2 0.0026 5.7E-08 73.3 11.6 89 208-296 329-449 (700)
121 TIGR02039 CysD sulfate adenyly 96.7 0.014 3E-07 60.0 10.8 107 228-348 22-132 (294)
122 COG0519 GuaA GMP synthase, PP- 96.5 0.05 1.1E-06 54.5 13.1 75 208-292 5-82 (315)
123 PRK02090 phosphoadenosine phos 96.4 0.013 2.9E-07 58.7 8.6 58 227-295 42-102 (241)
124 COG0301 ThiI Thiamine biosynth 96.2 0.031 6.6E-07 59.3 10.3 110 224-345 174-289 (383)
125 PRK08557 hypothetical protein; 96.0 0.064 1.4E-06 58.0 11.7 59 225-293 181-241 (417)
126 PF01507 PAPS_reduct: Phosphoa 95.7 0.027 5.8E-07 52.9 6.9 105 228-349 2-113 (174)
127 PRK12563 sulfate adenylyltrans 95.6 0.11 2.3E-06 53.9 10.9 107 227-347 39-149 (312)
128 TIGR00289 conserved hypothetic 95.4 0.14 3E-06 50.6 10.9 60 227-296 2-68 (222)
129 PRK13795 hypothetical protein; 95.4 0.1 2.2E-06 59.9 11.0 60 225-294 243-304 (636)
130 cd01984 AANH_like Adenine nucl 95.3 0.061 1.3E-06 44.4 6.7 34 228-268 1-34 (86)
131 PRK13794 hypothetical protein; 94.7 0.27 5.9E-06 54.4 11.6 60 225-293 247-308 (479)
132 KOG1706 Argininosuccinate synt 94.6 0.12 2.6E-06 52.4 7.8 121 226-360 6-139 (412)
133 KOG0399 Glutamate synthase [Am 94.1 0.19 4.2E-06 59.0 9.0 133 43-183 285-477 (2142)
134 TIGR00434 cysH phosophoadenyly 94.0 0.58 1.3E-05 45.8 11.4 57 226-292 14-72 (212)
135 KOG1622 GMP synthase [Nucleoti 93.6 0.3 6.5E-06 52.1 8.7 72 216-296 222-295 (552)
136 TIGR03183 DNA_S_dndC putative 92.8 0.8 1.7E-05 50.0 10.7 123 224-348 12-151 (447)
137 TIGR02057 PAPS_reductase phosp 92.7 1.2 2.5E-05 44.4 11.0 64 225-297 25-90 (226)
138 PRK06850 hypothetical protein; 92.7 1.6 3.4E-05 48.4 12.9 134 214-349 22-173 (507)
139 COG0175 CysH 3'-phosphoadenosi 92.3 1.1 2.4E-05 45.5 10.5 59 225-293 39-99 (261)
140 COG3969 Predicted phosphoadeno 91.8 0.88 1.9E-05 47.1 8.8 43 224-271 26-68 (407)
141 COG2102 Predicted ATPases of P 90.7 2.5 5.3E-05 41.5 10.5 60 227-296 2-69 (223)
142 PF01902 ATP_bind_4: ATP-bindi 87.3 2.4 5.2E-05 41.9 7.9 59 227-295 2-67 (218)
143 TIGR00290 MJ0570_dom MJ0570-re 86.8 6.1 0.00013 39.1 10.4 57 228-294 3-66 (223)
144 KOG2303 Predicted NAD synthase 83.8 3.7 7.9E-05 44.6 7.6 69 228-296 352-449 (706)
145 COG0067 GltB Glutamate synthas 45.8 35 0.00076 36.4 5.2 39 1-39 12-52 (371)
146 TIGR02055 APS_reductase thiore 40.5 92 0.002 29.9 6.9 49 235-293 2-52 (191)
147 KOG2840 Uncharacterized conser 40.1 92 0.002 32.5 7.0 65 225-293 51-119 (347)
148 KOG3147 6-phosphogluconolacton 37.8 3.8E+02 0.0083 27.0 10.6 79 208-290 22-107 (252)
149 PF08057 Ery_res_leader2: Eryt 36.5 20 0.00044 18.7 0.9 14 388-401 1-14 (14)
150 cd00713 GltS Glutamine amidotr 34.4 45 0.00096 36.2 4.0 35 2-36 1-36 (413)
151 COG1856 Uncharacterized homolo 33.1 36 0.00079 33.5 2.7 51 225-284 54-109 (275)
152 PF02677 DUF208: Uncharacteriz 30.0 2.8E+02 0.0061 26.4 8.1 93 234-340 7-109 (176)
153 PLN02309 5'-adenylylsulfate re 26.5 2.5E+02 0.0054 31.1 8.1 56 226-292 111-168 (457)
154 KOG0053 Cystathionine beta-lya 22.5 9.1E+02 0.02 26.3 11.2 122 212-352 80-204 (409)
155 TIGR00424 APS_reduc 5'-adenyly 20.3 3.7E+02 0.008 29.8 8.0 56 226-292 116-173 (463)
156 PF13519 VWA_2: von Willebrand 20.3 6.1E+02 0.013 22.5 8.6 70 225-303 99-169 (172)
No 1
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-145 Score=1097.93 Aligned_cols=538 Identities=67% Similarity=1.129 Sum_probs=511.6
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeCCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEEEEECC
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NGeIyN 80 (589)
||||++++.. .+....+..+.+++.+++|||||++|.++.....|+|+||||+|+..|.||+++.++.+++.+||||||
T Consensus 1 MCGI~Av~~~-~~~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYN 79 (543)
T KOG0571|consen 1 MCGILAVLGH-EDSEAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYN 79 (543)
T ss_pred CCceeeeecc-cchhhcChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEEEEECceecc
Confidence 9999999993 333445667788999999999999999998888999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCCCChHHHHHHHHHHH-hHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEc
Q 007799 81 HEALRERLTNHKFRTGSDCDVIAHLYEEY-GENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (589)
Q Consensus 81 ~~eL~~~l~~~~~~t~sD~Evil~ly~~~-G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faS 159 (589)
|++||+.+..|+|+|.||||+|+++|+++ |.++++.|+|+|||+++|.+.++++++||++|++||||+++.+++++|||
T Consensus 80 H~~Lr~~~~~~~~~T~sDcEvIi~lY~khg~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aS 159 (543)
T KOG0571|consen 80 HKKLREHCKDFEFQTGSDCEVIIHLYEKHGGEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFAS 159 (543)
T ss_pred HHHHHHHhhhcccccCCCceeeeehHhhcCchhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEee
Confidence 99999999889999999999999999999 68999999999999999999999999999999999999999899999999
Q ss_pred CccccccccccceeeCCccEEEeCCCceeEeeCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhccCCceEEeecCCcchH
Q 007799 160 ELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239 (589)
Q Consensus 160 e~k~L~~~~~~I~~lpPG~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS 239 (589)
|+|+|.+.|+.|..+||||++.++.+++.+|++|+|.....|+++.+...+|+.|++||++|||+|+|+||+||||||||
T Consensus 160 e~k~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLDSS 239 (543)
T KOG0571|consen 160 EMKCLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEWFDENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLDSS 239 (543)
T ss_pred ehhhhhhhhhceeecCCcceeecccccccCCCCchhhhccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCchHH
Confidence 99999999999999999999999999999999999998878888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHHHHhhhccCcccccc
Q 007799 240 LVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIR 319 (589)
Q Consensus 240 ~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~ 319 (589)
+||++|++.+++.+. +.+.++|+|++|++++||+.+||+||+++|+.||++.|+.++.+++++++||++|+||++++|
T Consensus 240 LvAsia~R~lk~~~~--~~~~~lhsFaIGle~SPDL~aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIR 317 (543)
T KOG0571|consen 240 LVASIAARELKKAQA--ARGSKLHSFAIGLEDSPDLLAARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIR 317 (543)
T ss_pred HHHHHHHHHHHHhhh--hcCCCceEEEecCCCChhHHHHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEe
Confidence 999999999876332 225689999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHHHHHHHHHHhhccccccccccccccCCceeecCCC
Q 007799 320 ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFL 399 (589)
Q Consensus 320 ~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~~l~~~dllr~dr~~~a~gvE~R~PfL 399 (589)
+++|||+++++++.+|++|||||||+|||||||.||++||+.++|++|.+++++.||.+||||+||++||||+|+|+|||
T Consensus 318 astpmyLlsr~Ikk~gvkmvlSGEGsDEifggYlYfh~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFL 397 (543)
T KOG0571|consen 318 ASTPMYLLSRKIKKLGVKMVLSGEGSDEIFGGYLYFHKAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFL 397 (543)
T ss_pred cCCchHHHHHHHHhcceEEEEecCCchhhhcceeeeecCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCCChhhHHHHHHHHHHHhcChHHHH
Q 007799 400 DKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQ 479 (589)
Q Consensus 400 D~~lve~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~ 479 (589)
|++|+++|++|||++|+.....++++||+||+||.+.+.|+||++|+||+|+||+++||++|++.|+++++..++|.+++
T Consensus 398 Dk~F~~~~~sldPe~K~~k~~~~r~eK~vlrsafd~~~~pyLP~eilwrqkeqfsdgVgySwid~L~d~~e~~isd~m~a 477 (543)
T KOG0571|consen 398 DKRFLELAMSLDPEEKMIKPKEGRIEKYVLRSAFDTTEKPYLPDEILWRQKEQFSDGVGYSWIDGLKDHAEKQISDAMFA 477 (543)
T ss_pred cHHHHHHHhcCChhHhcCCcchhhHHHHHHHhhcCCcCCCcChHHHHHHHHhhhccccchHHHHHHHHHHHHhcCHHHHh
Confidence 99999999999999999875557899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccCCCCCcchHHHHHHHHHHHHhCCCCccccccCCCCccccccccccccch--hhccCCCCCchhHhHhhHHHhh
Q 007799 480 NAQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDA--EWANNLDPSGRAALGVHLSAYE 555 (589)
Q Consensus 480 ~~~~~~~~~~~~~ke~~~~~~~f~~~~~~~~~~~~~~~~~~~~c~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~~~~ 555 (589)
++...+|+++|.|||+||||+||+++||++.++.||. +|+| +|+++.|||||+.. ||..++.
T Consensus 478 ~a~~~fp~ntP~TkEayyYR~iFe~~fp~~~~a~~v~-------------~wvp~a~W~~~~Dpsgr~~~-~h~~~~~ 541 (543)
T KOG0571|consen 478 NAAAEFPDNTPTTKEAYYYRQIFERFFPQKTAADTVH-------------KWVPKAKWGCAEDPSGRAAL-VHEKAAV 541 (543)
T ss_pred ChHhhCCCCCCCchhHHHHHHHHHHHCCcchhhhhHH-------------hhcchhhccCCCCccchhHH-HHHhhhc
Confidence 9999999999999999999999999999987777776 9999 89999999999766 9988874
No 2
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=4.7e-135 Score=1119.99 Aligned_cols=557 Identities=85% Similarity=1.417 Sum_probs=513.7
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeCCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEEEEECC
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NGeIyN 80 (589)
||||+|+++.+......++.+.+|+++|+|||||++|++..++++|||+||+|+|++.|.||+.++++++++++||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN 80 (578)
T PLN02549 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYN 80 (578)
T ss_pred CCcEEEEEeCCCCcchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEc
Confidence 99999999865443334567889999999999999999999999999999999999889999999999999999999999
Q ss_pred hHHHHHHhcCCCCCCCChHHHHHHHHHHHhHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcC
Q 007799 81 HEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (589)
Q Consensus 81 ~~eL~~~l~~~~~~t~sD~Evil~ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe 160 (589)
|.+|+++|..+.|+|.||||+|+++|++||.+++++|+|||||++||.++++++++|||+|+|||||++..++.++||||
T Consensus 81 ~~eLr~~L~~~~f~t~sD~Evil~ly~~~G~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE 160 (578)
T PLN02549 81 HKELREKLKLHKFRTGSDCEVIAHLYEEHGEEFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASE 160 (578)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEec
Confidence 99999999558899999999999999999999999999999999999999999999999999999999865688999999
Q ss_pred ccccccccccceeeCCccEEEeCCCceeEeeCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhccCCceEEeecCCcchHH
Q 007799 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240 (589)
Q Consensus 161 ~k~L~~~~~~I~~lpPG~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~ 240 (589)
+|+|...|.+|++|||||++.++.++.++||+|.|.....++.+++.+.++++|++||++||++|+|+|++||||||||+
T Consensus 161 ~KaL~~~~~~I~~lpPGh~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSl 240 (578)
T PLN02549 161 MKALCDDCERFEEFPPGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSL 240 (578)
T ss_pred HHHHHHHhCCEEEeCCCeEEEEcCCCEEEEEecccCccccCCchhHHHHHHHHHHHHHHHHhccCCceeEeecCCccHHH
Confidence 99999999999999999999887667899999987543334445677899999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHHHHhhhccCccccccc
Q 007799 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA 320 (589)
Q Consensus 241 Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~ 320 (589)
||++|++..++......|+.+++|||+|+++++|+.+|++||+++|++||++.++.+++++.++++++++|+++++++++
T Consensus 241 Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~ 320 (578)
T PLN02549 241 VASIAARHLAETKAARQWGQQLHSFCVGLEGSPDLKAAREVADYLGTVHHEFHFTVQEGIDAIEDVIYHLETYDVTTIRA 320 (578)
T ss_pred HHHHHHHhhhhcccccccCCCceEEecCCCCCCHHHHHHHHHHHhCCCCeEEEEChHHHHHHHHHHHHHhcCCCCccchh
Confidence 99999987643221112345799999999999999999999999999999999999999999999999999999888999
Q ss_pred hHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHHHHHHHHHHhhccccccccccccccCCceeecCCCC
Q 007799 321 STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLD 400 (589)
Q Consensus 321 ~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~~l~~~dllr~dr~~~a~gvE~R~PfLD 400 (589)
++++|++++.+++.|++|+|||+||||+||||.+|+++|+..+|++|+.++++.+|.++++|+||++|+||+|+|+||||
T Consensus 321 s~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~~~ap~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD 400 (578)
T PLN02549 321 STPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLD 400 (578)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCchHhhhcChHhhhhCCCHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCC
Confidence 99999999999999999999999999999999999999987789999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCCChhhHHHHHHHHHHHhcChHHHHh
Q 007799 401 KDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480 (589)
Q Consensus 401 ~~lve~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~ 480 (589)
++||+++++||+++|+.++.+++++|||||+||++.++++||++|+||+|+||++|+|++|++.|++++++.++|++|++
T Consensus 401 ~~~v~~a~~ip~~~k~~~~~~~~~eK~iLR~a~~~~~~~~LP~~Il~R~K~~f~~~~g~~w~~~l~~~~~~~~~d~~~~~ 480 (578)
T PLN02549 401 KEFIDVAMSIDPEWKMIRPGEGRIEKWVLRKAFDDEEDPYLPKHILWRQKEQFSDGVGYSWIDGLKAHAEKHVSDEMFAN 480 (578)
T ss_pred HHHHHHHHhCCHHHHhcCCCCCCCchHHHHHHHhhcCcccCCHHHhCCCccCCCCCCcchHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999997532235799999999986434589999999999999999999999999999999999999999
Q ss_pred cCccCCCCCcchHHHHHHHHHHHHhCCCCccccccCCCCccccccccccccchhhccCCCCCchhHhHhhHHHhhhh
Q 007799 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAEWANNLDPSGRAALGVHLSAYEKQ 557 (589)
Q Consensus 481 ~~~~~~~~~~~~ke~~~~~~~f~~~~~~~~~~~~~~~~~~~~c~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (589)
+...+|.++|.|||+||||+||++|||+++++.|||.|+||||||.++++|+|+|++.+|||||++.+||+++|++.
T Consensus 481 ~~~~~~~~~p~tke~~~yr~if~~~~p~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~dps~r~~~~~~~~~~~~~ 557 (578)
T PLN02549 481 ASFRYPHNTPTTKEAYYYRMIFEKHFPQDAARLTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHVAAYEED 557 (578)
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHCCCcchhhhcCCCcccccchhHHHHHHHhhCCCCCcchhhHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999653
No 3
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=4.9e-135 Score=1122.89 Aligned_cols=556 Identities=59% Similarity=1.039 Sum_probs=509.5
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe-----CCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEE
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH-----GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVN 75 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~-----~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~N 75 (589)
||||+|+++........++.+.+|+++|+|||||++|++.. ++++|||+||+|+|+..|.|||.+++++++++||
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~N 80 (586)
T PTZ00077 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQN 80 (586)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEE
Confidence 99999999865544344567889999999999999999975 5789999999999998899999999999999999
Q ss_pred EEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHhH-HHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecC
Q 007799 76 GEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE-NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLD 152 (589)
Q Consensus 76 GeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G~-~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~ 152 (589)
||||||.+|+++| .|+.|+|.||||+|+++|++||. +++++|+|||||++||.++++++++|||+|+|||||++..+
T Consensus 81 GEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~~G~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~ 160 (586)
T PTZ00077 81 GEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEYGPKDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKD 160 (586)
T ss_pred EEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCHHHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecC
Confidence 9999999999999 57999999999999999999999 99999999999999999999999999999999999997556
Q ss_pred ceEEEEcCccccccccccceeeCCccEEEeCC--CceeEeeCCCCCCC--CCCCCCCcHHHHHHHHHHHHHhhhccCCce
Q 007799 153 GSIWISSELKGLNDDCEHFEAFPPGHLYSSKS--GGLKRWYNPTWYSE--AIPSTPYDPLVLRQAFENAVIKRLMTDVPF 228 (589)
Q Consensus 153 g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~--~~~~~y~~p~~~~~--~~~~~~~~~~~lr~~l~~aV~~rl~sd~pv 228 (589)
|.++||||+|+|...|.+|++|||||++.++. .+.++||+|.|... ..++.++++++++++|++||++|+++|+|+
T Consensus 161 g~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvpv 240 (586)
T PTZ00077 161 GSIWFSSELKALHDQCVEVKQFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPF 240 (586)
T ss_pred CeEEEEecHHHHHHhcCCEEEeCCCcEEEecCCcceeEEecCCcccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 78999999999999999999999999998764 45789999987542 233444567899999999999999999999
Q ss_pred EEeecCCcchHHHHHHHHHHhcccc--cccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHHH
Q 007799 229 GVLLSGGLDSSLVASITARHLAGTK--AARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (589)
Q Consensus 229 gv~LSGGLDSS~Iaala~~~~~~~~--~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~ 306 (589)
|++||||||||+||+++++...+.. ..+.|..+++|||+|+++++|+.+|++||+++|++||++.++.+++++.++++
T Consensus 241 Gv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~ 320 (586)
T PTZ00077 241 GLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLEGSPDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDV 320 (586)
T ss_pred EEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCCCCchHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHH
Confidence 9999999999999999998754211 01123357999999999999999999999999999999999999999999999
Q ss_pred HhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHHHHHHHHHHhhccccccccccc
Q 007799 307 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKS 386 (589)
Q Consensus 307 i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~~l~~~dllr~dr~ 386 (589)
++++|+|+.+++++++++|++++.+++.|++|+|||+|||||||||.+|+.+|+..+|++|+.++++++|.+|++|+||+
T Consensus 321 i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~~~ap~~~~~~~e~~~~l~~l~~~~l~r~Dr~ 400 (586)
T PTZ00077 321 IYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDELFGGYLYFHKAPNREEFHRELVRKLHDLHKYDCLRANKA 400 (586)
T ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhhccCcHhhhhCcchHHHHHHHHHHHHHHhccCCchhhHH
Confidence 99999999888999999999999999999999999999999999999999888877788888888899999999999999
Q ss_pred cccCCceeecCCCChHHHHHHhcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCCChhhHHHHHH
Q 007799 387 TSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLK 466 (589)
Q Consensus 387 ~~a~gvE~R~PfLD~~lve~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~ 466 (589)
+|+||+|+|+||||++||+++++||+++|+.+..+++++|||||+||++..+++||++|+||+|+||++|+|+.|++.|+
T Consensus 401 ~ma~glE~RvPFLD~~~v~~a~~ip~~~K~~~~~~~~~~K~iLR~a~~~~~~~~LP~~I~~R~K~~F~~~~g~~w~~~l~ 480 (586)
T PTZ00077 401 TMAWGIEARVPFLDKDFLEYVMNIDPKYKMCNAFEGQMEKYILRKAFEGLEKPYLPDEILWRQKEQFSDGVGYSWIDGLK 480 (586)
T ss_pred HHhcCceeecCcCCHHHHHHHHhCCHHHhcCCCCCCCCCHHHHHHHHhccCcCcCCHHHhCCcccCCCCCCchhHHHHHH
Confidence 99999999999999999999999999999976322357999999999974455899999999999999999989999999
Q ss_pred HHHHHhcChHHHHhcCccCCCCCcchHHHHHHHHHHHHhCCCCccccccCCCCccccccccccccchhhccCCCCCchhH
Q 007799 467 AHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAEWANNLDPSGRAA 546 (589)
Q Consensus 467 ~~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~~~~~~~~~~~~~~~~c~~~~~~~w~~~~~~~~~~~~~~~ 546 (589)
+++++.++|+.++++...+|.++|.|||+||||+||++|||+++++.|||+||||||+|+++++|+|+|++..|||||++
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~p~tke~~~yr~if~~~~p~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~dps~r~~ 560 (586)
T PTZ00077 481 EYAEKKISDQEFSQASFLFPYNTPRTKEAYLYRQIFSKHFPSDSAALTVPYGPSIACSTEKALEWDESFKKNTDESGRAV 560 (586)
T ss_pred HHHHHHhChHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHCCchhheeecCCCcccccccHHHHHHHHHhcCCCCcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhHHHhhh
Q 007799 547 LGVHLSAYEK 556 (589)
Q Consensus 547 ~~~~~~~~~~ 556 (589)
.+||+++|++
T Consensus 561 ~~~~~~~~~~ 570 (586)
T PTZ00077 561 LSVHNDAKQD 570 (586)
T ss_pred HHHHHHHhhh
Confidence 9999999965
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=2.7e-131 Score=1089.15 Aligned_cols=548 Identities=59% Similarity=1.028 Sum_probs=505.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeCCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEEEEECC
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NGeIyN 80 (589)
||||+|+++.+......+..+.+|+++|+|||||++|++..++++|||+||+|+|++.|.||+.+.++++++++||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN 80 (554)
T PRK09431 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYN 80 (554)
T ss_pred CceEEEEEcCCCcchhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEec
Confidence 99999999865443323567889999999999999999999999999999999999889999999999999999999999
Q ss_pred hHHHHHHh-cCCCCCCCChHHHHHHHHHHHhHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEc
Q 007799 81 HEALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (589)
Q Consensus 81 ~~eL~~~l-~~~~~~t~sD~Evil~ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faS 159 (589)
|.+|+++| ..+.|+|.||||+|+++|++||.+++++|+|||||++||.++++++++|||+|+|||||++..++.++|||
T Consensus 81 ~~eLr~~L~~~~~f~t~sD~Evil~ly~~~G~~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faS 160 (554)
T PRK09431 81 HQELRAELGDKYAFQTGSDCEVILALYQEKGPDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFAS 160 (554)
T ss_pred HHHHHHHHhccCCcCCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEec
Confidence 99999999 45889999999999999999999999999999999999999999999999999999999987448899999
Q ss_pred CccccccccccceeeCCccEEEeCCCceeEeeCCCCCCC-CCCCCCCcHHHHHHHHHHHHHhhhccCCceEEeecCCcch
Q 007799 160 ELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDS 238 (589)
Q Consensus 160 e~k~L~~~~~~I~~lpPG~~~~~~~~~~~~y~~p~~~~~-~~~~~~~~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDS 238 (589)
|+|+|...|++|++|||||++.+..++.++||++.|... ..++.++.+++++++|++||++|+++|+|+|++|||||||
T Consensus 161 E~kaL~~~~~~I~~lpPGh~l~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDS 240 (554)
T PRK09431 161 EMKALVPVCKTIKEFPPGHYYWSKDGEFVRYYQRDWFDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDS 240 (554)
T ss_pred chHHHHHhcCCEEEECCCeEEEECCCcEEEecCCCcccccccCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccH
Confidence 999999999999999999999887667889999877432 2233345678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccc----cccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHHHHhhhccCc
Q 007799 239 SLVASITARHLAGTK----AARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYD 314 (589)
Q Consensus 239 S~Iaala~~~~~~~~----~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~ 314 (589)
|+||++|++...+.. ...+|+++++|||+|+++++|+.+|++||+++|++||++.++.+++++.++++++++|+++
T Consensus 241 SlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~d 320 (554)
T PRK09431 241 SLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEGSPDLKAAREVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYD 320 (554)
T ss_pred HHHHHHHHHhhcccccccccccccCCCceEEEEeCCCCChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 999999998764321 1113445799999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHHHHHHHHHHhhccccccccccccccCCcee
Q 007799 315 VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEA 394 (589)
Q Consensus 315 ~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~~l~~~dllr~dr~~~a~gvE~ 394 (589)
++++++++++|++++.+++.|+||+|||+|||||||||.+|+.+|+...|++|.++++..+|.++++|+||++|+||+|+
T Consensus 321 p~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElFgGY~~~~~~p~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~ 400 (554)
T PRK09431 321 VTTIRASTPMYLMARKIKAMGIKMVLSGEGADELFGGYLYFHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEA 400 (554)
T ss_pred CccchhHHHHHHHHHHHHHcCCEEEEecCchhhhhcCchhhhhCCChhhcCHHHHHHHHHHHHHhhhccchhhhhcCcee
Confidence 98899999999999999888999999999999999999999988887788888899999999999999999999999999
Q ss_pred ecCCCChHHHHHHhcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCCChhhHHHHHHHHHHHhcC
Q 007799 395 RVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVT 474 (589)
Q Consensus 395 R~PfLD~~lve~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~ 474 (589)
|+||||++||+++++||+++|+.++ ++.+|||||+||++ +||++|+||+|+||++|++++|++.+++++++.++
T Consensus 401 RvPFLD~~lv~~a~~ip~~~K~~~~--~~~~K~iLR~a~~~----~LP~~I~~R~K~~f~~~~g~~w~~~l~~~~~~~~~ 474 (554)
T PRK09431 401 RVPFLDKEFLDVAMRINPEDKMCGN--GKMEKHILREAFEG----YLPESILWRQKEQFSDGVGYSWIDTLKEVAAEQVS 474 (554)
T ss_pred ecCcCCHHHHHHHHhCCHHHHhcCC--CCCCHHHHHHHHhh----hCCHHHhCCCCCCCCCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999752 24689999999999 99999999999999999998999999999999999
Q ss_pred hHHHHhcCccCCCCCcchHHHHHHHHHHHHhCCCCccccccCCCCccccccccccccchhhccCCCCCchhHhHhhHHHh
Q 007799 475 DKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAEWANNLDPSGRAALGVHLSAY 554 (589)
Q Consensus 475 d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~~~~~~~~~~~~~~~~c~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 554 (589)
|+.++++...+|.++|.|||+||||+||++|||+++++.|||+++||+|+|..+.+|+++|++.+|||||++..+|.++|
T Consensus 475 ~~~~~~~~~~~~~~~~~~ke~~~y~~if~~~fp~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~d~s~r~~~~~~~~~~ 554 (554)
T PRK09431 475 DQQLATARFRFPYNTPTTKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEWDEAFKNMDDPSGRAVSGVHQSAY 554 (554)
T ss_pred cHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHCCchhhhhccCCCCccccccchhhhhhhhcCCCCCcchhhhhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989998764
No 5
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=2.9e-94 Score=804.12 Aligned_cols=472 Identities=29% Similarity=0.486 Sum_probs=396.6
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeCCEEEEEeeeeecCC-CCCCCCeeecCCcEEEEEEEEEC
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDP-ASGDQPLYNEDKKIVVTVNGEIY 79 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~l~h~RLai~d~-~~~~QP~~~~~~~~~l~~NGeIy 79 (589)
||||+|++..++... ..+.+.+|++.|+|||||++|+|..++++|||+||+|+|. ..+.||+.+++++++++||||||
T Consensus 1 McGI~G~~~~~~~~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiy 79 (589)
T TIGR03104 1 MCGICGEIRFDGQAP-DVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIY 79 (589)
T ss_pred CcEEEEEEecCCCcc-hHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEec
Confidence 999999996544332 2467889999999999999999999999999999999997 57999999999999999999999
Q ss_pred ChHHHHHHh--cCCCCCCCChHHHHHHHHHHHhHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEE
Q 007799 80 NHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWI 157 (589)
Q Consensus 80 N~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~f 157 (589)
|+.||+++| .|+.|.|.||+|+|+++|++||.+++++|+|||||++||..+++++++|||+|+|||||+.. ++.++|
T Consensus 80 N~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~G~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~f 158 (589)
T TIGR03104 80 NYRELRAELEALGYRFFSDGDTEVILKAYHAWGRDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRF 158 (589)
T ss_pred CHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHHHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEE
Confidence 999999999 58999999999999999999999999999999999999999999999999999999999986 688999
Q ss_pred EcCccccccc----------------------------cccceeeCCccEEEeC-CC--ceeEeeCCCCCCC---CCCCC
Q 007799 158 SSELKGLNDD----------------------------CEHFEAFPPGHLYSSK-SG--GLKRWYNPTWYSE---AIPST 203 (589)
Q Consensus 158 aSe~k~L~~~----------------------------~~~I~~lpPG~~~~~~-~~--~~~~y~~p~~~~~---~~~~~ 203 (589)
|||+|+|+.. +++|++|||||++.++ .+ ..++||++..... ...+.
T Consensus 159 aSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~ 238 (589)
T TIGR03104 159 ASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTE 238 (589)
T ss_pred EeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCH
Confidence 9999998642 3689999999999875 34 3568999764221 11123
Q ss_pred CCcHHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC-----CcHHHH
Q 007799 204 PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYA 278 (589)
Q Consensus 204 ~~~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-----~D~~~A 278 (589)
++.+++++++|.+||++|+.+|+|||++||||+|||+|++++++.. ..+++|||++++++ +|..+|
T Consensus 239 ~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~~~---------~~~l~tftigf~~~~~~~~dE~~~A 309 (589)
T TIGR03104 239 ADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAG---------VDGLRTFSIGFEDVGGEKGDEFEYS 309 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHHhc---------CCCceEEEEEecCCCCCCCChHHHH
Confidence 3456789999999999999999999999999999999999988754 24699999999754 799999
Q ss_pred HHHHHHhCCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccC
Q 007799 279 KEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA 358 (589)
Q Consensus 279 ~~vA~~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~ 358 (589)
++||+++|++||++.++.+++++.+++++++++.|.. ..+.+++|++++.+++ +++|+|||+||||+||||.+|...
T Consensus 310 ~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~~--~~~~~~~~~l~~~a~~-~~kV~LsGeGaDElFgGY~~~~~~ 386 (589)
T TIGR03104 310 DIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPMV--SHDCVAFYLLSEEVSK-HVKVVQSGQGADEVFGGYHWYPPL 386 (589)
T ss_pred HHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHHhC-CCeEEeecCchHhcccCcHhHHHH
Confidence 9999999999999999999999999999998876542 2346788999998876 699999999999999999876421
Q ss_pred ------CC-----------hHHH----HH---------HH-------------HHHHHh------hcccccccccccccc
Q 007799 359 ------PN-----------KEEF----HR---------ET-------------CHKIKA------LHQYDCLRANKSTSA 389 (589)
Q Consensus 359 ------p~-----------~~~~----~~---------e~-------------~~~l~~------l~~~dllr~dr~~~a 389 (589)
|. ...+ .. +. ..++.. +....+.|.||++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa 466 (589)
T TIGR03104 387 AAGAGDPVAAYRRAFFDRDHAEYLEMVGPRFHAEDVSGEFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMA 466 (589)
T ss_pred HhhccCchHHHHHHHhccCHHHHHHHhhhhhhccchhHHHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhh
Confidence 10 0000 00 00 000000 001124579999999
Q ss_pred CCceeecCCCChHHHHHHhcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCCChhhHHH-HHHHH
Q 007799 390 WGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWID-GLKAH 468 (589)
Q Consensus 390 ~gvE~R~PfLD~~lve~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~-~l~~~ 468 (589)
+|||+|+||||++|||||++||+++|+.++ +|+|||+||++ +||++|++|+|.||+.|++ .|++ .++++
T Consensus 467 ~svE~R~PFLD~~lve~a~~lP~~~k~~~~-----~K~iLR~a~~~----~lP~~i~~R~K~gf~~P~~-~w~~~~l~~~ 536 (589)
T TIGR03104 467 WGLEARVPFLDHELVELAARIPPELKLADG-----GKGVLKEAARG----VIPSEVIDRPKGYFPVPAL-KYLRGPFLEW 536 (589)
T ss_pred ccccccCCccCHHHHHHHHhCCHHHhcCCC-----cCHHHHHHHhh----hCCHHHhCCCCCCCCCcHH-HHhhhHHHHH
Confidence 999999999999999999999999999752 79999999999 9999999999999999996 6886 69999
Q ss_pred HHHhcChHHHHhcCccCCCCCcchHHHHHHHHHHHHh
Q 007799 469 AEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERF 505 (589)
Q Consensus 469 ~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~ 505 (589)
+++.++++.+...+++++. ..++++++|
T Consensus 537 ~~~~l~~~~~~~~~~~~~~---------~v~~~~~~~ 564 (589)
T TIGR03104 537 VRDALTSPAARERGLFQRA---------YVDRLLADP 564 (589)
T ss_pred HHHHhCccchhhcCccCHH---------HHHHHHHHh
Confidence 9999998888777888753 346677776
No 6
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-92 Score=772.77 Aligned_cols=521 Identities=37% Similarity=0.586 Sum_probs=430.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeCCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEEEEECC
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NGeIyN 80 (589)
||||+|+++.++ .......+.+|.+.|+|||||++|+|...++.|||.||+|+|+..|.||+.+++++++++|||||||
T Consensus 1 MCGI~g~~~~~~-~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN 79 (542)
T COG0367 1 MCGIAGILNFKN-LIDAKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYN 79 (542)
T ss_pred CCceeeeecccc-cccchHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeee
Confidence 999999999762 2222678899999999999999999999999999999999999889999999778899999999999
Q ss_pred hHHHHHHh--cCCCCCCCChHHHHHHHHHHHhHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEE
Q 007799 81 HEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWIS 158 (589)
Q Consensus 81 ~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~fa 158 (589)
+.|||++| .|+.|+|.||||+|+++|++||.+++++|+|||||++||.++++|+++|||+|+|||||+.. ++.++||
T Consensus 80 ~~elr~~l~~~g~~f~t~sDtEvil~~y~~~g~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~fa 158 (542)
T COG0367 80 VEELRKELREAGYEFRTYSDTEVILTLYEEWGEDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFA 158 (542)
T ss_pred HHHHHHHHHhcCceeccccchHHHHHHHHHHHHHHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEE
Confidence 99999999 49999999999999999999999999999999999999999999999999999999999986 6679999
Q ss_pred cCccccccc-----cccceeeCCccEEEeCCCc-eeEeeCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhccCCceEEee
Q 007799 159 SELKGLNDD-----CEHFEAFPPGHLYSSKSGG-LKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLL 232 (589)
Q Consensus 159 Se~k~L~~~-----~~~I~~lpPG~~~~~~~~~-~~~y~~p~~~~~~~~~~~~~~~~lr~~l~~aV~~rl~sd~pvgv~L 232 (589)
||+|+|..+ +++|++|||||++.++.++ +.+||++.+.... ...++..++++++|+++|++|+++|+|+|++|
T Consensus 159 SE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~l~~~l~~sV~~r~~advpvg~~l 237 (542)
T COG0367 159 SEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLIRRYWRLSEKTSK-ESADELAEHLRSLLEDAVKRRLVADVPVGVFL 237 (542)
T ss_pred echhhhhhCCcccccCCeEEcCCCcEEEEcCCCceeeeecccccccc-cchHHHHHHHHHHHHHHHHHHhccCCcEEEEe
Confidence 999999999 9999999999999988655 8999998876543 34455678999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCC--cHHHHHHHHHHhCCcceEEEeChhhhHHhHHHHHhhh
Q 007799 233 SGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHV 310 (589)
Q Consensus 233 SGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~--D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~i~~~ 310 (589)
|||+|||+||++|++.... ...+|||+|++++. |.++|+++|+.+|++|+++.++++|+.+.++++++++
T Consensus 238 SGGlDSS~Iaa~a~~~~~~--------~~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~ 309 (542)
T COG0367 238 SGGLDSSLIAAIAAEELGK--------EGKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEVVKAL 309 (542)
T ss_pred CCCccHHHHHHHHHHhccc--------cceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhc
Confidence 9999999999999998742 12236999999874 9999999999999999999999999999999999999
Q ss_pred ccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccc-cccccCCChHHHHHHHHHHHHhhcccc-ccccccccc
Q 007799 311 ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY-LYFHKAPNKEEFHRETCHKIKALHQYD-CLRANKSTS 388 (589)
Q Consensus 311 e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY-~~~~~~p~~~~~~~e~~~~l~~l~~~d-llr~dr~~~ 388 (589)
|+|+. +.+++|+|++++.+++.|++|+||||||||||||| +++..++....+..+..++...+..++ +.|.|+.++
T Consensus 310 ~~p~~--~~~~~ply~~~~~a~~~g~kVvLSGeGADElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 387 (542)
T COG0367 310 DTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADELFGGYPPYSRFAPGPEELLNEALRRALALIDYNRLARDDRVAA 387 (542)
T ss_pred CCCCc--ccchhHHHHHHHhhhhcCcEEeecCccHHHHhcCCchhhhhccchHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 99885 66789999999999999999999999999999999 676666666555544433333333333 478999999
Q ss_pred cCCceeecCCCChHHHHHHhcCCccccccCCCCCccchHHHHHhhccCCCCC--CChhhhhcccCCCCCCChhhHHHHHH
Q 007799 389 AWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPY--LPKHVLYRQKEQFSDGVGYSWIDGLK 466 (589)
Q Consensus 389 a~gvE~R~PfLD~~lve~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~--LP~~i~~R~K~~f~~~~~~~w~~~l~ 466 (589)
++++|.|+||||.+++++++++|+..++..+ +....|.++|-+|.+ . +|++|.||+|+.++.+.+..+.
T Consensus 388 ~~~~E~r~p~ld~~~~~l~l~~~~~~~i~~~-~~m~~~le~Rvpf~~----~~~l~~~i~~~~K~~~~~gk~~lr~---- 458 (542)
T COG0367 388 AFGVEARVPFLDRELVDLALKIPPEHKLNRD-RSMAKKLERRVPFSD----GVELPEEIPWREKIAFGYGKGILRI---- 458 (542)
T ss_pred hcccccccCchHHHHHHHHhcCCcccccchh-hhhhhhhheeccccc----chhhHhhCChhhhhhcCCcchhhHh----
Confidence 9999999999999999999999999999764 112467778888887 5 9999999999998887765433
Q ss_pred HHHHHhcChHHHHhcCccCCC-----CCcchHHHHHHHHHHHHhCCCCccccccCCCCccccccccccccchhhccCCCC
Q 007799 467 AHAEQHVTDKMVQNAQYIFPH-----NTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAEWANNLDP 541 (589)
Q Consensus 467 ~~~~~~l~d~~l~~~~~~~~~-----~~~~~ke~~~~~~~f~~~~~~~~~~~~~~~~~~~~c~~~~~~~w~~~~~~~~~~ 541 (589)
..+..+.+..+.....-++. ..+.+++.+.++.+++++++......+..-.....| .--|+ ....++
T Consensus 459 -~~~~~~p~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~---~~~~~~ 530 (542)
T COG0367 459 -AYEKILPDFILSRKKLGFPKPLWGRYYENSLLLWLYRLIEEEFSPEYPLVDLALVARLYEK----RLWLL---IKGLAY 530 (542)
T ss_pred -hhhccCcHHHhcccccCCCcccccccccchHHHHHHHHHhhhcccccchhhhHHHHHHHhh----ccchh---hhhhHH
Confidence 22333333333333333332 234578999999999999886544444331111122 11232 456778
Q ss_pred CchhHhHhhHH
Q 007799 542 SGRAALGVHLS 552 (589)
Q Consensus 542 ~~~~~~~~~~~ 552 (589)
|+|... +|.+
T Consensus 531 ~~~~~~-~~~~ 540 (542)
T COG0367 531 SARLKK-LKPQ 540 (542)
T ss_pred HHHHhh-cccc
Confidence 888554 5543
No 7
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=8.8e-89 Score=769.54 Aligned_cols=477 Identities=30% Similarity=0.524 Sum_probs=392.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeCCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEEEEECC
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NGeIyN 80 (589)
||||+|+++.+++.......+.+|+++|+|||||++|+|..++++|||+||+|+|...+.||+.+++++++++|||||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N 80 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYN 80 (628)
T ss_pred CCEEEEEEECCCCccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECC
Confidence 99999999755432122356889999999999999999999999999999999998789999999999999999999999
Q ss_pred hHHHHHHh--cCCCCCCCChHHHHHHHHHHHhHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEE
Q 007799 81 HEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWIS 158 (589)
Q Consensus 81 ~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~fa 158 (589)
+.||+++| .|+.|.|.||+|+|+++|++||.+++++|+|+|||++||..+++++++||++|+|||||+...++.++||
T Consensus 81 ~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~fa 160 (628)
T TIGR03108 81 FQELVAELQALGHVFRTRSDTEVIVHAWEEWGEACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFG 160 (628)
T ss_pred HHHHHHHHHhcCCccCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEE
Confidence 99999999 5889999999999999999999999999999999999999999999999999999999987546789999
Q ss_pred cCccccccc---------------------------cccceeeCCccEEEeCCC----ceeEeeCCCCCCCCCCCCCCcH
Q 007799 159 SELKGLNDD---------------------------CEHFEAFPPGHLYSSKSG----GLKRWYNPTWYSEAIPSTPYDP 207 (589)
Q Consensus 159 Se~k~L~~~---------------------------~~~I~~lpPG~~~~~~~~----~~~~y~~p~~~~~~~~~~~~~~ 207 (589)
||+++|... +++|++|||||++.++.+ +.++||++...+....+.++.+
T Consensus 161 Se~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~ 240 (628)
T TIGR03108 161 SELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADAL 240 (628)
T ss_pred ecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHH
Confidence 999988542 478999999999887632 2467998754321112334567
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC--CcHHHHHHHHHHh
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYL 285 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~D~~~A~~vA~~l 285 (589)
++++++|.+||+.|+.+|+|+|++||||+|||+|++++++.. ..+++|||+++++. +|..+|++||+++
T Consensus 241 e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~---------~~~i~t~s~~~~~~~~dE~~~A~~vA~~~ 311 (628)
T TIGR03108 241 AELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLS---------DTPVNTCSIAFDDPAFDESAYARQVAERY 311 (628)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhc---------CCCCcEEEEecCCCCCChHHHHHHHHHHh
Confidence 889999999999999999999999999999999999988754 24799999999754 8999999999999
Q ss_pred CCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccC-------
Q 007799 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA------- 358 (589)
Q Consensus 286 g~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~------- 358 (589)
|++|+++.+++++ ++.+++++++.+.|.. ..+.+++|++++.+++ +++|+|||+||||+|+||.+|...
T Consensus 312 g~~h~~~~~~~~~-~~~~~~~~~~~~~P~~--~~~~~~~~~~~~~a~~-~~kV~LsG~GgDElf~GY~~~~~~~~~~~~~ 387 (628)
T TIGR03108 312 GTNHRVETVDPDD-FSLVDRLAGLYDEPFA--DSSALPTYRVCELARK-RVTVALSGDGGDELFAGYRRYRWHMAEERVR 387 (628)
T ss_pred CCCCeEEecCHHH-HHHHHHHHHHhCCCCC--CchHHHHHHHHHHHHC-CCCEEEeccchhhcccCcHHHHHHHHHHHHh
Confidence 9999999999887 6778888877765532 2345788889988765 799999999999999999754310
Q ss_pred ---C----------------Ch--------H--H-----------H-H------HHHHHH-----------------H-H
Q 007799 359 ---P----------------NK--------E--E-----------F-H------RETCHK-----------------I-K 373 (589)
Q Consensus 359 ---p----------------~~--------~--~-----------~-~------~e~~~~-----------------l-~ 373 (589)
| .. . . + . .+.... + .
T Consensus 388 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 467 (628)
T TIGR03108 388 GILPLGLRRPLFGTLGRLYPKADWAPRMLRAKTTFQALARDPLEGYFHSVSVLDNALRRQLFSPDFRRELQGYRAIEVLR 467 (628)
T ss_pred hhCCHHHHHHHHHHHHhhCcccccchhhhhhhhhHhhhhcchHHHHHHHhhhcChHHHHHHHHHHhhhhcccCCHHHHHH
Confidence 1 00 0 0 0 0 000000 0 0
Q ss_pred hh----c------------------cccccccccccccCCceeecCCCChHHHHHHhcCCccccccCCCCCccchHHHHH
Q 007799 374 AL----H------------------QYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRK 431 (589)
Q Consensus 374 ~l----~------------------~~dllr~dr~~~a~gvE~R~PfLD~~lve~a~slP~~~k~~~~~~~~~~K~iLR~ 431 (589)
.+ . ..-+.+.||++|++|+|+|+||||++|||||++||+++|+.++ .+|+|||+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~lL~~~Dr~sMa~svE~R~PFLD~~lve~a~slP~~~k~~~~----~~K~iLR~ 543 (628)
T TIGR03108 468 RHAARAPTDDALSLAQYLDLKTYLPGDILTKVDRASMAHGLEVRVPLLDHRLVEWAAGLPPDLKLRGG----EGKYLLKK 543 (628)
T ss_pred HHhccccCCCHHHHHHHHHHHHhCccccccccCccchhccccccCCCCCHHHHHHHHhCCHHHhcCCC----CchHHHHH
Confidence 00 0 0012357999999999999999999999999999999999764 48999999
Q ss_pred hhccCCCCCCChhhhhcccCCCCCCChhhHHH-HHHHHHHHhcChHHHHhcCccCCCCCcchHHHHHHHHHHHHhCCC
Q 007799 432 AFDDEERPYLPKHVLYRQKEQFSDGVGYSWID-GLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQ 508 (589)
Q Consensus 432 a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~-~l~~~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~~ 508 (589)
||++ +||++|++|+|+||+.|+. .|++ .+++++++.+.++.+...|++++. ..+++++++..+
T Consensus 544 a~~~----~LP~~I~~R~K~gF~~p~~-~w~~~~l~~~~~~~l~~~~~~~~g~~d~~---------~v~~l~~~~~~~ 607 (628)
T TIGR03108 544 AMRP----YLPDDVLYRPKMGFSVPLA-AWFRGPLRERVRTLVLGETLAETGLFDPA---------FIRKLVDQHQSG 607 (628)
T ss_pred HHHh----hCCHHHhCCCCCCCCCCHH-HHhccHHHHHHHHHhChhhhhhcCCcCHH---------HHHHHHHHhhcc
Confidence 9999 9999999999999999996 6886 689999999999888888888753 346677776543
No 8
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=3.3e-87 Score=732.58 Aligned_cols=429 Identities=45% Similarity=0.746 Sum_probs=369.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceE-EeCCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEEEEECChH
Q 007799 4 ILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-QHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHE 82 (589)
Q Consensus 4 I~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~-~~~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NGeIyN~~ 82 (589)
|+|+++.++.....++.+.+|++.|+|||||++|+| ..++++|||+||+|+|...+.||+.+.+++++++|||||||+.
T Consensus 1 i~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~ 80 (467)
T TIGR01536 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHE 80 (467)
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHH
Confidence 688888776543334678999999999999999999 8899999999999999877899999999999999999999999
Q ss_pred HHHHHh--cCCCCCCCChHHHHHHHHHHHhHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcC
Q 007799 83 ALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (589)
Q Consensus 83 eL~~~l--~~~~~~t~sD~Evil~ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe 160 (589)
||+++| .|+.|++.||+|+|+++|++||.+++++|+|+|||++||+++++++++||++|+|||||+.. ++.++||||
T Consensus 81 eL~~~l~~~g~~~~~~~D~e~il~~y~~~g~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe 159 (467)
T TIGR01536 81 ELREELEAKGYTFQTDSDTEVILHLYEEWGEECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASE 159 (467)
T ss_pred HHHHHHHhcCCccCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEec
Confidence 999999 58999999999999999999999999999999999999999999999999999999999986 789999999
Q ss_pred ccccccc----------------------------cccceeeCCccEEEeCCC--c-eeEeeCCCCCCCCCCCCCCcHHH
Q 007799 161 LKGLNDD----------------------------CEHFEAFPPGHLYSSKSG--G-LKRWYNPTWYSEAIPSTPYDPLV 209 (589)
Q Consensus 161 ~k~L~~~----------------------------~~~I~~lpPG~~~~~~~~--~-~~~y~~p~~~~~~~~~~~~~~~~ 209 (589)
+|+|... +++|++|||||++.++.+ . .++||.+. .....+.++.+++
T Consensus 160 ~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~ 237 (467)
T TIGR01536 160 IKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWERR--DEHTDSEEDLVDE 237 (467)
T ss_pred HHHHHhccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecCCC--CCCCCCHHHHHHH
Confidence 9987531 478999999999987633 2 34566522 1112233456789
Q ss_pred HHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC---CCcHHHHHHHHHHhC
Q 007799 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLG 286 (589)
Q Consensus 210 lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~---~~D~~~A~~vA~~lg 286 (589)
++++|.+||++|+.+++|+|++||||+|||+|++++++...+ .+++|||+++++ .+|..+|+++|+++|
T Consensus 238 l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~--------~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg 309 (467)
T TIGR01536 238 LRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPR--------GPVHTFSIGFEGSPDFDESPYARKVADHLG 309 (467)
T ss_pred HHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHHHhcCC--------CCceEEEEecCCCCCCChHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999876521 369999999873 367889999999999
Q ss_pred CcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHHH
Q 007799 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHR 366 (589)
Q Consensus 287 ~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~ 366 (589)
++|+++.++.+++++.+++++++++.+. .....+++|++++.+++.|++|+|||+||||+||||.++..++....+.+
T Consensus 310 ~~~~~i~~~~~~~~~~~~~~v~~~~~p~--~~~~~~~~~~l~~~a~~~G~~vlltG~GaDElf~GY~~~~~~~~~~~~~~ 387 (467)
T TIGR01536 310 TEHHEVLFSVEEGLDALPEVIYHLEDPT--TIRASIPLYLLSKLAREDGVKVVLSGEGADELFGGYLYFHEAPAAEALRE 387 (467)
T ss_pred CcCeEEECCHHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHhcCCEEEEecCcchhcccCchhhhhccccHHHHH
Confidence 9999999999999999999999887543 34567888999999999999999999999999999999877654444433
Q ss_pred HHH-HHHHhhccccccccccccccCCceeecCCCChHHHHHHhcCCccccccCCCCCccchHHHHHhhccCCCCCCChhh
Q 007799 367 ETC-HKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHV 445 (589)
Q Consensus 367 e~~-~~l~~l~~~dllr~dr~~~a~gvE~R~PfLD~~lve~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i 445 (589)
+.. ..++.....++++.||++|++|+|+|+||||++||+|+++||+++|+.++ .+|||||+||++ +||++|
T Consensus 388 ~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD~~lv~~a~~lp~~~k~~~~----~~K~iLR~a~~~----~lP~~i 459 (467)
T TIGR01536 388 ELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLDHELVEYALSIPPEMKLRDG----KEKYLLREAFEG----YLPEEI 459 (467)
T ss_pred HHHHHHHHHhCcccchhHHHHHhhccccccCCcCCHHHHHHHHhCCHHHhcCCC----CcHHHHHHHHhh----hCCHHH
Confidence 322 22344444567778999999999999999999999999999999999763 589999999999 999999
Q ss_pred hhcccCCC
Q 007799 446 LYRQKEQF 453 (589)
Q Consensus 446 ~~R~K~~f 453 (589)
+||+|.||
T Consensus 460 ~~R~K~gf 467 (467)
T TIGR01536 460 LWRKKEGF 467 (467)
T ss_pred hcCCCCCC
Confidence 99999987
No 9
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-43 Score=359.44 Aligned_cols=429 Identities=23% Similarity=0.300 Sum_probs=296.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeCC----EEEEEeeeeecCCCCCCCCeeecCCcEEEEEEE
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD----FYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNG 76 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~----~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NG 76 (589)
||||+.-+..+.+.. ....-..|...+..||||.++....+. +.++-.-|++.+ ....||.+..+ ++++.|||
T Consensus 1 MCGI~~s~~~~~~l~-~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d~-~~vfl~NG 77 (520)
T KOG0573|consen 1 MCGIFLSVDKDLALN-SELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVEDD-RYVFLFNG 77 (520)
T ss_pred CceEEEeecCCcccc-ccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceeccc-ceEEEecc
Confidence 999999988765421 112234567778999999887554332 233333355555 23469988654 48999999
Q ss_pred EECChHHHHHHhcCCCCCCCChHHHHHHHHHHHh-----HHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEec
Q 007799 77 EIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG-----ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL 151 (589)
Q Consensus 77 eIyN~~eL~~~l~~~~~~t~sD~Evil~ly~~~G-----~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~ 151 (589)
||||-. .-.+..|+..|+......+ .+.++.++|.|+|++||.+.++||.+||++|+|.|-|...+
T Consensus 78 eIyn~~---------~s~~~~d~~~l~~~l~~~~e~~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~ 148 (520)
T KOG0573|consen 78 EIYNGE---------KSDTLFDTDILAEELSNLKESGDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDP 148 (520)
T ss_pred eeccCC---------CccccchHHHHHHHHhcCCccccHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEecc
Confidence 999943 2355669999988887654 46788899999999999999999999999999999999875
Q ss_pred CceEEEEcCccccccccccceeeCCccEEEeCCCceeEeeCCCCCC---CCCCCC-------------CCcHHHHHHHHH
Q 007799 152 DGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYS---EAIPST-------------PYDPLVLRQAFE 215 (589)
Q Consensus 152 ~g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~~~~y~~p~~~~---~~~~~~-------------~~~~~~lr~~l~ 215 (589)
.+..++.|..- ...+.|.+|||+-......--...|.+..... ...+.. .+.+..+.+.+.
T Consensus 149 ~~f~~~~st~g---~~~~~i~e~~~~F~~~~~d~~~w~y~s~~le~~~~~s~~p~~~i~~~~l~~~~~~~~v~~l~~~l~ 225 (520)
T KOG0573|consen 149 FNFSLVLSTVG---TSGKLIYEVPPVFRNKLTDRVPWPYLSTKLENSLGPSLPPLCDISEIFLNQSHRSEVVSGLHTGLR 225 (520)
T ss_pred CceeEEeeccc---cCCccccccCchhhhccCCccccccccceecccCCCcCCCccchHHHHhhhHHHHHHHhhhHHHHH
Confidence 55444333211 12235678999933322211111111100000 011111 112345566677
Q ss_pred HHHHhhhc-------c--------CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC---CC-----
Q 007799 216 NAVIKRLM-------T--------DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---GS----- 272 (589)
Q Consensus 216 ~aV~~rl~-------s--------d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~---~~----- 272 (589)
++++.|.. + ..+|+|++|||+||++||.++....+.. .+|...++.|. +.
T Consensus 226 ds~k~rvl~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~n-------e~IdLINVaF~n~e~~~~~~~ 298 (520)
T KOG0573|consen 226 DSLKDRVLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPEN-------EPIDLINVAFGNPEGSKEQNV 298 (520)
T ss_pred HHHhhhhhccChhHhhhccccccccCcEEEEecCCchHHHHHHHHHhhcCCC-------CceeEEEeeccCCCcccccCC
Confidence 77776642 1 3689999999999999999999988654 57888888773 33
Q ss_pred CcHHHHHHHHHHhCC-------cceEEEeChhhhHHhHHHHHhhhccCccccccc--hHHHHHHHHH---------HHhc
Q 007799 273 PDLKYAKEVADYLGT-------VHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA--STPMFLMSRK---------IKSL 334 (589)
Q Consensus 273 ~D~~~A~~vA~~lg~-------~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~--~~~~~~l~~~---------a~~~ 334 (589)
||++.+++-++.|.. ...+++++.+|+..+-+. |.++-.|..+.++- +...|+.++. -.+.
T Consensus 299 PDRktgr~g~~eL~s~~P~R~~nlV~vnV~~~El~~~k~~-I~~LiyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~s 377 (520)
T KOG0573|consen 299 PDRKTGRRGLEELQSLYPKRSWNLVEVNVTYEELQKAKEH-IKHLIYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYRS 377 (520)
T ss_pred ccHHHHHHHHHHHHHhCCcceEEEEeccCCHHHHHHHHHH-HHHhhCcCccccccccceEEEEeeccccccccCcccccc
Confidence 899999988888764 345667777776554443 44443333222222 3345666651 1134
Q ss_pred CCeEEEeCCcchhcccccccccc---CCChHHHHHHHHHHHHhhccccccccccccccCCceeecCCCChHHHHHHhcCC
Q 007799 335 GVKMVISGEGSDEIFGGYLYFHK---APNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAID 411 (589)
Q Consensus 335 g~~vvLsG~GgDElfgGY~~~~~---~p~~~~~~~e~~~~l~~l~~~dllr~dr~~~a~gvE~R~PfLD~~lve~a~slP 411 (589)
.++|+|+|-||||+||||.+|+. .+..+.+.+|+.+.+.++..+++.|+||+.+.+|+|+|+||||..||+|..++|
T Consensus 378 ~a~V~l~GsGADEllgGY~rhr~rf~~~~~e~l~eEl~~dl~rIs~RNLgRDDRViad~Gke~R~PFLde~vV~~~~~l~ 457 (520)
T KOG0573|consen 378 YARVALLGSGADELLGGYHRHRTRFEKEDLEGLREELERDLFRISHRNLGRDDRVIADSGKEVRSPFLDENVVKLSNALP 457 (520)
T ss_pred ccEEEEecCChHHhhccHHHHHhhhccCCcHHHHHHHHHHHhhhhhcccCccchhhhccCceEeccchHHHHHHHHHhcc
Confidence 57999999999999999998773 233346889999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccC--CCCCCC
Q 007799 412 PEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKE--QFSDGV 457 (589)
Q Consensus 412 ~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~--~f~~~~ 457 (589)
+..|+..+.. +.+|.|||++...+ -||... .-||+ ||+...
T Consensus 458 ~~~k~~l~l~-GG~KlllRe~~~~l---Gl~~~s-~~pKrAmQFGSr~ 500 (520)
T KOG0573|consen 458 VSVKMMLGLR-GGEKLLLREAGRRL---GLPSAS-TEPKRAMQFGSRM 500 (520)
T ss_pred hhHHhhhccc-chhhHHHHHHHHHh---CCCccc-ccchHHHHhhhhh
Confidence 9999987653 36999999999974 355543 33444 555443
No 10
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=100.00 E-value=2.4e-41 Score=344.49 Aligned_cols=227 Identities=42% Similarity=0.724 Sum_probs=185.4
Q ss_pred HHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHHHHHHhCCc
Q 007799 211 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTV 288 (589)
Q Consensus 211 r~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~vA~~lg~~ 288 (589)
+++|.+||+.|+++++|||++||||+|||+|++++++... .++.+||+++. +.+|..+|+++|+++|++
T Consensus 1 r~~l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~ 71 (269)
T cd01991 1 RELLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLP---------EPVKTFSIGFGFEGSDEREYARRVAEHLGTE 71 (269)
T ss_pred ChHHHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhC---------CCCceEEEeeCCCCCChHHHHHHHHHHhCCc
Confidence 4689999999999999999999999999999999988752 34888998775 346899999999999999
Q ss_pred ceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCCh-------
Q 007799 289 HHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK------- 361 (589)
Q Consensus 289 h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~------- 361 (589)
|+.+.++.+++.+.+++.++..+.+. ...+.++++.+++.+++.|++|+|||+||||+|+||.++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf~Gy~~~~~~~~~~~~~~~~ 149 (269)
T cd01991 72 HHEVEFTPADLLAALPDVIWELDEPF--ADSSAIPLYLLSRLARKHGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRL 149 (269)
T ss_pred ceEEEcCHHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHhCCEEEEecCCccccccChHHHHHHHHHhhccccC
Confidence 99999999998888888877766543 234567889999999999999999999999999999876532110
Q ss_pred -------------HHHHHHHHHHHHhhccc--------------------cccccccccccCCceeecCCCChHHHHHHh
Q 007799 362 -------------EEFHRETCHKIKALHQY--------------------DCLRANKSTSAWGLEARVPFLDKDFINVAM 408 (589)
Q Consensus 362 -------------~~~~~e~~~~l~~l~~~--------------------dllr~dr~~~a~gvE~R~PfLD~~lve~a~ 408 (589)
..+.+.+.+.+..++.. -+.+.|+++|++|+|+|+||||++|||||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dr~~m~~gvE~R~PflD~~lve~~~ 229 (269)
T cd01991 150 LGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFAL 229 (269)
T ss_pred cchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccchHHHhhHHHHHhcccccCCCCCHHHHHHHH
Confidence 01111121222222211 145689999999999999999999999999
Q ss_pred cCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCC
Q 007799 409 AIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDG 456 (589)
Q Consensus 409 slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~ 456 (589)
+||+++|+.++ .+|+|||+|+++ +||++|++|+|++|+.|
T Consensus 230 ~lP~~~k~~~~----~~K~iLR~a~~~----~lP~~i~~r~K~g~~~p 269 (269)
T cd01991 230 SLPPELKIRGG----REKYLLREAAAG----LLPDEILWRPKRGFQVP 269 (269)
T ss_pred cCCHHHhcCCC----CchHHHHHHHHh----hCCHHHHcCCCCCCCCC
Confidence 99999999763 589999999999 99999999999999764
No 11
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=2.8e-40 Score=326.86 Aligned_cols=189 Identities=42% Similarity=0.771 Sum_probs=170.5
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeCCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEEEEECCh
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NGeIyN~ 81 (589)
|||+|+++.+... ...+.+..|+.+|+|||||+.|++..++++|||+||++.+...+.||+..+++++++++||||||+
T Consensus 1 cGI~g~~~~~~~~-~~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~ 79 (220)
T cd00712 1 CGIAGIIGLDGAS-VDRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNY 79 (220)
T ss_pred CeEEEEEeCCCCc-chHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCH
Confidence 9999999865422 235678899999999999999999999999999999999977899999998889999999999999
Q ss_pred HHHHHHh--cCCCCCCCChHHHHHHHHHHHhHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEc
Q 007799 82 EALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (589)
Q Consensus 82 ~eL~~~l--~~~~~~t~sD~Evil~ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faS 159 (589)
.+|+++| .++.|.+.||+|+|+++|++||.+++++|+|+|||++||.++++++++||++|++||||+.. ++.++|||
T Consensus 80 ~~L~~~l~~~~~~~~~~sD~e~l~~~~~~~g~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aS 158 (220)
T cd00712 80 RELRAELEALGHRFRTHSDTEVILHLYEEWGEDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFAS 158 (220)
T ss_pred HHHHHHHHhcCCcCCCCChHHHHHHHHHHHhHHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEc
Confidence 9999999 57788999999999999999999999999999999999999999999999999999999986 67899999
Q ss_pred Cccccccc---------------------------cccceeeCCccEEEeCCC--ceeEeeC
Q 007799 160 ELKGLNDD---------------------------CEHFEAFPPGHLYSSKSG--GLKRWYN 192 (589)
Q Consensus 160 e~k~L~~~---------------------------~~~I~~lpPG~~~~~~~~--~~~~y~~ 192 (589)
|+++|... +++|++|||||++.++.+ +.++||+
T Consensus 159 e~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 159 ELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred chHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeCC
Confidence 99998652 368999999999988754 4568884
No 12
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=100.00 E-value=1.4e-39 Score=327.62 Aligned_cols=225 Identities=35% Similarity=0.656 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCC--cHHHHHHHHHHhC
Q 007799 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLG 286 (589)
Q Consensus 209 ~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~--D~~~A~~vA~~lg 286 (589)
+||++|.+||++|+.++.|+|++||||+||++|++++++.. +.++++||+++++.+ |..+|+++|+++|
T Consensus 1 ~~r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~---------~~~~~~~t~~~~~~~~~e~~~a~~va~~~~ 71 (255)
T PF00733_consen 1 ELRELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQG---------GPPIKTFTIGFEDDDYDEREYARKVARHLG 71 (255)
T ss_dssp HHHHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTC---------CSEEEEEEEECSSCC--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhh---------CCceeEEEEEcCCCcchhHHHHHHHhcccc
Confidence 58999999999999999999999999999999999999833 368999999999877 9999999999999
Q ss_pred CcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccC----CChH
Q 007799 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA----PNKE 362 (589)
Q Consensus 287 ~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~----p~~~ 362 (589)
++|+.+.++.+++.+.++++++.++.|..+....+.+.+.+++.+++.|++++|||+||||+|+||+.+... ....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf~G~~~~~~~~~~~~~~~ 151 (255)
T PF00733_consen 72 LEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELFGGYPRYRPAYLRPLLLG 151 (255)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHHTTTT-TTGGGCGHCCHH
T ss_pred cccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEeccccccccccchHhHHHHhhhhhhh
Confidence 999999999999999999999888877642234566778888988889999999999999999999665432 1222
Q ss_pred HHHHHHHHHHHhh------------------------ccccccccccccccCCceeecCCCChHHHHHHhcCCccccccC
Q 007799 363 EFHRETCHKIKAL------------------------HQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMIN 418 (589)
Q Consensus 363 ~~~~e~~~~l~~l------------------------~~~dllr~dr~~~a~gvE~R~PfLD~~lve~a~slP~~~k~~~ 418 (589)
.....+.+.+..+ ....+.+.+++++.+|+|+|.||||++||+||++||.++|+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~PflD~~lv~~~~~lP~~~~~~~ 231 (255)
T PF00733_consen 152 RLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASMAYGIEVRSPFLDRRLVEFCLSLPPEQRFDG 231 (255)
T ss_dssp HHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHHCTT-EEE-GGGSHHHHHHHHCB-GGGCCET
T ss_pred hhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhhhcccccCceecCHHHHHHHHhCCHHHHcCC
Confidence 2232232222211 1122345788999999999999999999999999999999976
Q ss_pred CCCCccchHHHHHhhccCCCCCCChhhhhccc
Q 007799 419 PQEGRIEKWILRKAFDDEERPYLPKHVLYRQK 450 (589)
Q Consensus 419 ~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K 450 (589)
+ .+|+|||++|++ +||++|+||+|
T Consensus 232 ~----~~K~llR~a~~~----~lP~~i~~r~K 255 (255)
T PF00733_consen 232 G----IYKYLLREAMKD----LLPPEILWRKK 255 (255)
T ss_dssp T----ECTHHHHHHHTC----CS-HHHHTS-S
T ss_pred C----CCcHHHHHHHHh----hCCHHHhcCCC
Confidence 4 579999999999 99999999998
No 13
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=1.5e-37 Score=296.95 Aligned_cols=168 Identities=26% Similarity=0.387 Sum_probs=143.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe----CCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEEE
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNG 76 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~----~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NG 76 (589)
||||+|+++...........+.+|+++|+|||||++|++.. .++.|+|.||+|+|...+.||+...+++++++|||
T Consensus 1 MCGI~~~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NG 80 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNG 80 (181)
T ss_pred CCcEEEEEeCCCCcccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECC
Confidence 99999999764432111345788999999999999999986 35899999999999877899999888889999999
Q ss_pred EECChHHHHHHhcCCCCCCCChHHHHHHHHHHHh------HHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEe
Q 007799 77 EIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWG 150 (589)
Q Consensus 77 eIyN~~eL~~~l~~~~~~t~sD~Evil~ly~~~G------~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~ 150 (589)
||||+.+|++ +.||+|+|+++|+++| .+++++|+|+|||++||+.+++++++|||+|+|||||++.
T Consensus 81 eIyN~~~l~~--------s~sDtEvi~~l~~~~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~ 152 (181)
T cd03766 81 ELYNIDGVED--------EENDTEVIFELLANCSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLD 152 (181)
T ss_pred EEECcccccC--------CCCHHHHHHHHHHHHhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEee
Confidence 9999999874 7899999999999999 4899999999999999999999999999999999999986
Q ss_pred c-CceEEEEcCccccccccccceeeCCcc
Q 007799 151 L-DGSIWISSELKGLNDDCEHFEAFPPGH 178 (589)
Q Consensus 151 ~-~g~~~faSe~k~L~~~~~~I~~lpPG~ 178 (589)
. ++.|+|||+..... .....++||+-
T Consensus 153 ~~~~~l~~aS~~~~~~--~~~~~e~~~~g 179 (181)
T cd03766 153 PNGFELSISSVSGSSS--GSGFQEVLAGG 179 (181)
T ss_pred CCCCcEEEEEccCCCC--CCceEECCCCc
Confidence 4 67899999965332 23567777754
No 14
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.1e-35 Score=317.04 Aligned_cols=217 Identities=22% Similarity=0.388 Sum_probs=172.6
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai 53 (589)
||||+|+++..+ ....+..|+.+|+|||||++|++.. ++++|||+||+|
T Consensus 1 MCGI~G~~~~~~----~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at 76 (445)
T PRK08525 1 MCAVVGVINSKN----AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYST 76 (445)
T ss_pred CceEEEEEcCcc----HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeeccccc
Confidence 999999998642 2456678999999999999999762 247999999999
Q ss_pred cCC--CCCCCCeee--cCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh--------HHHHhhccc
Q 007799 54 IDP--ASGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (589)
Q Consensus 54 ~d~--~~~~QP~~~--~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G--------~~~l~~l~G 119 (589)
.|. ..+.||+.+ .+++++++|||+|||+.+||++| .|+.|+|.||||+|+++|.+++ .+++++|+|
T Consensus 77 ~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~~ea~~~~~~~L~G 156 (445)
T PRK08525 77 AGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESLKDRIIEALKKIIG 156 (445)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 996 368999987 56889999999999999999999 5899999999999999999876 578999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeC--CCcee--EeeCCC
Q 007799 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSK--SGGLK--RWYNPT 194 (589)
Q Consensus 120 ~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~--~~~~~--~y~~p~ 194 (589)
+|||+++|+ ++++++||++|+|||||+...++.++||||.++|... .+.++.++||+++.++ .++++ +++...
T Consensus 157 ~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~~~~~~~ 234 (445)
T PRK08525 157 AYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQLFEPT 234 (445)
T ss_pred ceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEEEecCCC
Confidence 999999996 7899999999999999997545689999999999543 4568889999998876 22332 233211
Q ss_pred -------CCCCCCCCC---CCcHHHHHHHHHHHHHhhhc
Q 007799 195 -------WYSEAIPST---PYDPLVLRQAFENAVIKRLM 223 (589)
Q Consensus 195 -------~~~~~~~~~---~~~~~~lr~~l~~aV~~rl~ 223 (589)
|.....|+. ...+-++|..+-+...+.+.
T Consensus 235 ~~~c~fe~iY~~rpds~~~g~~v~~~R~~~G~~La~~~~ 273 (445)
T PRK08525 235 PRICAFEYIYFARPDSIVFGKNVYEVRKKMGEELAKKFP 273 (445)
T ss_pred CccceeEeeeecCCCceECCEEHHHHHHHHHHHHHHHhc
Confidence 111122321 23455777777777666654
No 15
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=2.2e-35 Score=290.38 Aligned_cols=172 Identities=29% Similarity=0.453 Sum_probs=154.5
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeeec
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai~ 54 (589)
|||+|+++... ..+.+..|+.+|+|||||++|++.. ++++|||+|++++
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (215)
T cd00714 1 CGIVGYIGKRE----AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATH 76 (215)
T ss_pred CEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCC
Confidence 99999998532 2456788999999999999999865 4589999999999
Q ss_pred CC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHhH----------HHHhhcccc
Q 007799 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDGM 120 (589)
Q Consensus 55 d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G~----------~~l~~l~G~ 120 (589)
+. ..+.|||...+++++++|||+|||+.+|+++| .|+.|++.||+|+|+++|.+++. +++++|+|+
T Consensus 77 g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~ 156 (215)
T cd00714 77 GEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGA 156 (215)
T ss_pred CCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 96 46899999877889999999999999999999 48899999999999999999986 699999999
Q ss_pred eEEEEEECCCC-EEEEEEcCCCCceeEEEEecCceEEEEcCccccccccccceeeCCccEEE
Q 007799 121 FSFVLLDTRDN-SFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYS 181 (589)
Q Consensus 121 Fa~vi~D~~~~-~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~~~I~~lpPG~~~~ 181 (589)
|||++||+.++ +++++|| .|||||+.. ++.++||||.++|...+..+..|.+|.++.
T Consensus 157 fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 157 YALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred eEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 99999998764 9999999 499999986 678999999999999999999999998864
No 16
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.1e-34 Score=308.97 Aligned_cols=231 Identities=26% Similarity=0.365 Sum_probs=179.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai 53 (589)
||||+|+++..+ ....+..++.+|+|||||++|+... +++++||+|+++
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT 86 (475)
T PRK07631 11 ECGVFGIWGHEE----AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYAT 86 (475)
T ss_pred CCcEEEEECCch----hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccc
Confidence 999999998532 2355678899999999999998741 457899999999
Q ss_pred cCC--CCCCCCee--ecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh--------HHHHhhccc
Q 007799 54 IDP--ASGDQPLY--NEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (589)
Q Consensus 54 ~d~--~~~~QP~~--~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G--------~~~l~~l~G 119 (589)
.|. ..+.||+. +.+++++++|||+|||+.+||++| .|+.|+|.||||+|+++|.+++ .+++++|+|
T Consensus 87 ~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G 166 (475)
T PRK07631 87 AGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKG 166 (475)
T ss_pred cCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 996 35899995 456889999999999999999999 5899999999999999999987 468999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCcccccccc-ccceeeCCccEEEeCCCceeEeeC-CCCC-
Q 007799 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYN-PTWY- 196 (589)
Q Consensus 120 ~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~-~~I~~lpPG~~~~~~~~~~~~y~~-p~~~- 196 (589)
+|||+++|. ++++++|||+|+|||||+.. ++.++||||.++|.... +.++.|+||+++.++.++++.+-. +...
T Consensus 167 ~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~ 243 (475)
T PRK07631 167 AYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAPNQNR 243 (475)
T ss_pred CceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCCCCCc
Confidence 999999997 77999999999999999986 66899999999996553 568899999998876544433211 1100
Q ss_pred --------CCCCCC---CCCcHHHHHHHHHHHHHhhhc--cCCceEEeecCCcchHHHHH
Q 007799 197 --------SEAIPS---TPYDPLVLRQAFENAVIKRLM--TDVPFGVLLSGGLDSSLVAS 243 (589)
Q Consensus 197 --------~~~~~~---~~~~~~~lr~~l~~aV~~rl~--sd~pvgv~LSGGLDSS~Iaa 243 (589)
....|+ ....+.+.|..+-+...+... .|.-++| -||+..+|
T Consensus 244 ~~C~fE~iYfarpdS~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpV-----P~s~~~~A 298 (475)
T PRK07631 244 SICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEAPVEADVVTGV-----PDSSISAA 298 (475)
T ss_pred ccceEEEEEeecCCcccCCeEHHHHHHHHHHHHHhhCCCCCcEEEEe-----chhHHHHH
Confidence 002232 233566788777777776543 2333344 45565444
No 17
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.3e-34 Score=308.68 Aligned_cols=234 Identities=26% Similarity=0.366 Sum_probs=183.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe----------------------------CCEEEEEeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----------------------------GDFYLAHQRLA 52 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~----------------------------~~~~l~h~RLa 52 (589)
||||+|+++... ....+..++.+|+|||||+.|+... ++++|||+|++
T Consensus 21 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~s 96 (479)
T PRK09123 21 ECGVFGILGHPD----AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYS 96 (479)
T ss_pred cCeEEEEEcCcc----hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecc
Confidence 999999998542 2356778899999999999998752 24689999999
Q ss_pred ecCC--CCCCCCeeec--CCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh--------HHHHhhcc
Q 007799 53 IIDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLD 118 (589)
Q Consensus 53 i~d~--~~~~QP~~~~--~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G--------~~~l~~l~ 118 (589)
|.|. ..+.|||... +++++++|||+|||+.+||++| .|+.|++.||+|+|++++.+++ .+++++|+
T Consensus 97 T~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~ 176 (479)
T PRK09123 97 TTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVE 176 (479)
T ss_pred cCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Confidence 9995 4689999863 6889999999999999999999 5899999999999999998765 67899999
Q ss_pred cceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeCCCc-eeEee--CCC
Q 007799 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG-LKRWY--NPT 194 (589)
Q Consensus 119 G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~-~~~y~--~p~ 194 (589)
|+|||++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++... ++.+. ...
T Consensus 177 G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~~~~ 253 (479)
T PRK09123 177 GAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPFPPQ 253 (479)
T ss_pred cceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEecCCC
Confidence 9999999997 78999999999999999986 6789999999999653 5678999999998876433 44332 211
Q ss_pred CCC--------CCCCC---CCCcHHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHH
Q 007799 195 WYS--------EAIPS---TPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASI 244 (589)
Q Consensus 195 ~~~--------~~~~~---~~~~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaal 244 (589)
... ...|+ ....+.++|..+.+...+....+. -.+.+-.||+..+|.
T Consensus 254 ~~~~C~FE~VYfarPdS~~~g~~vy~~R~~~g~~La~~~~~~~---D~Vv~VP~sg~~~A~ 311 (479)
T PRK09123 254 PARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVDA---DVVVPVPDSGVPAAI 311 (479)
T ss_pred CCCCChhheEEecCCCceECCeEHHHHHHHHHHHHHHhCCCCC---eEEEEcCccHHHHHH
Confidence 000 01222 234567888888888887654322 234455666766543
No 18
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.2e-34 Score=309.25 Aligned_cols=227 Identities=23% Similarity=0.313 Sum_probs=178.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe--------------------------CCEEEEEeeeeec
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH--------------------------GDFYLAHQRLAII 54 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~--------------------------~~~~l~h~RLai~ 54 (589)
||||+|+++.++ ....+..++.+|+|||+|+.|+... +++++||+||+|.
T Consensus 19 mCGI~G~~~~~~----~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~ 94 (474)
T PRK06388 19 DCAVVGFKGGIN----AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTA 94 (474)
T ss_pred CCeEEEEECCcc----hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeec
Confidence 999999998642 2456788999999999999998862 2479999999999
Q ss_pred CC--CCCCCCeee--cCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHH----HHh-----HHHHhhccc
Q 007799 55 DP--ASGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYE----EYG-----ENFVDMLDG 119 (589)
Q Consensus 55 d~--~~~~QP~~~--~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~----~~G-----~~~l~~l~G 119 (589)
|. ..+.||+.. .+++++|+|||+|||+.+||++| .|+.|+|.||||||+++|. ++| .+++++|+|
T Consensus 95 G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G 174 (474)
T PRK06388 95 GSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRG 174 (474)
T ss_pred CCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Confidence 96 368999973 46789999999999999999999 5899999999999999994 456 568999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeCCCceeEeeC-CCC--
Q 007799 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRWYN-PTW-- 195 (589)
Q Consensus 120 ~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~~~~y~~-p~~-- 195 (589)
+|||++++. ++++++|||+|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.++++.++. +..
T Consensus 175 ~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~~~~~ 251 (474)
T PRK06388 175 AYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLDGDKV 251 (474)
T ss_pred ceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecCCCcc
Confidence 999999976 78999999999999999986 6679999999999876 4479999999998876544433332 110
Q ss_pred -------CCCCCCCC---CCcHHHHHHHHHHHHHhhhc--cCCceEEeecC
Q 007799 196 -------YSEAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLSG 234 (589)
Q Consensus 196 -------~~~~~~~~---~~~~~~lr~~l~~aV~~rl~--sd~pvgv~LSG 234 (589)
.....|+. ...+.+.|..+-+...+... .|.-+.+.+||
T Consensus 252 ~~C~fE~iYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~ 302 (474)
T PRK06388 252 AHCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSG 302 (474)
T ss_pred ccceEEEEeecCCccccCCcHHHHHHHHHHHHHHhhccCCCcEEEeeCCCc
Confidence 00122322 23456777777766666543 34456777887
No 19
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.4e-33 Score=304.46 Aligned_cols=182 Identities=25% Similarity=0.416 Sum_probs=157.2
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe----------------------------CCEEEEEeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----------------------------GDFYLAHQRLA 52 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~----------------------------~~~~l~h~RLa 52 (589)
||||+|+++.++ ....+..++.+|+|||+|+.|+... +++++||+|++
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~Rys 86 (484)
T PRK07272 11 ECGVFGIWGHPD----AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYA 86 (484)
T ss_pred cCeEEEEECCcc----HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeecc
Confidence 999999998632 2456778999999999999998763 24799999999
Q ss_pred ecCC--CCCCCCeee--cCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh--------HHHHhhcc
Q 007799 53 IIDP--ASGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLD 118 (589)
Q Consensus 53 i~d~--~~~~QP~~~--~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G--------~~~l~~l~ 118 (589)
+.|. ..+.||+.. .+++++++|||+|||+.+||++| .|+.|+|.||+|+|++++.+++ .+++++|+
T Consensus 87 T~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~~~~~eai~~~~~~l~ 166 (484)
T PRK07272 87 TAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVK 166 (484)
T ss_pred ccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcc
Confidence 9996 358999976 46889999999999999999999 5899999999999999998864 57899999
Q ss_pred cceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeCCCcee
Q 007799 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLK 188 (589)
Q Consensus 119 G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~~~ 188 (589)
|+|||++++. ++++++|||+|+|||||+...++.++||||.++|... .+.++.|+||+++.++.++.+
T Consensus 167 G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~~ 235 (484)
T PRK07272 167 GGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGIQ 235 (484)
T ss_pred CceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCceE
Confidence 9999999997 7899999999999999997545679999999999765 366889999999887754443
No 20
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.8e-34 Score=306.81 Aligned_cols=228 Identities=25% Similarity=0.316 Sum_probs=176.3
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai 53 (589)
||||+|+++.+.+ ....+..++.+|+|||+|+.|+... +++++||+||+|
T Consensus 33 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT 109 (500)
T PRK07349 33 ACGVFGVYAPGEE---VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYST 109 (500)
T ss_pred CCeEEEEECCCcC---HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeeccc
Confidence 9999999985432 2456678999999999999998651 347999999999
Q ss_pred cCC--CCCCCCeeec--CCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHH-------Hh---HHHHhhc
Q 007799 54 IDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE-------YG---ENFVDML 117 (589)
Q Consensus 54 ~d~--~~~~QP~~~~--~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~-------~G---~~~l~~l 117 (589)
.|. ..+.||+... .++++++|||+|||+.+||++| .|+.|+|.||||+|+++|.+ ++ .+++++|
T Consensus 110 ~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l 189 (500)
T PRK07349 110 TGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRC 189 (500)
T ss_pred CCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 996 3589999864 4789999999999999999999 58999999999999999975 33 4688999
Q ss_pred ccceEEEEEECCCCEEEEEEcCCCCceeEEEEec---CceEEEEcCccccccc-cccceeeCCccEEEeCCCceeEe-eC
Q 007799 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRW-YN 192 (589)
Q Consensus 118 ~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~---~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~~~~y-~~ 192 (589)
+|+|||++.++ ++++++||++|+|||||+... ++.++||||.++|... ++.++.|+||+++.++.++++.+ +.
T Consensus 190 ~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~~~ 267 (500)
T PRK07349 190 QGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFHWA 267 (500)
T ss_pred hhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEecc
Confidence 99999999986 789999999999999999752 3579999999999654 56789999999988765443332 21
Q ss_pred CCCC---------CCCCCC---CCCcHHHHHHHHHHHHHhhhc--cCCceEEeec
Q 007799 193 PTWY---------SEAIPS---TPYDPLVLRQAFENAVIKRLM--TDVPFGVLLS 233 (589)
Q Consensus 193 p~~~---------~~~~~~---~~~~~~~lr~~l~~aV~~rl~--sd~pvgv~LS 233 (589)
+... ....|+ ....+.+.|..+-+...+... .|.-+++..|
T Consensus 268 ~~~~~~~C~fE~vYfarpdS~~~g~~V~~~R~~~G~~La~~~~~~~DvVv~VP~s 322 (500)
T PRK07349 268 QEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDS 322 (500)
T ss_pred cCCCcceeEEEeeeccCCCCccCCeEHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 1100 012232 233567788888777765543 3444555555
No 21
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=6.4e-34 Score=304.77 Aligned_cols=226 Identities=25% Similarity=0.355 Sum_probs=174.5
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEE--------------------------eCCEEEEEeeeeec
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ--------------------------HGDFYLAHQRLAII 54 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~--------------------------~~~~~l~h~RLai~ 54 (589)
||||+|+++. + ....+..++.+|+|||+|+.|+.. .+++++||+||+|.
T Consensus 4 ~CGI~G~~~~--~---~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~ 78 (442)
T PRK08341 4 KCGIFAAYSE--N---APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTS 78 (442)
T ss_pred ccEEEEEECC--C---cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeecccc
Confidence 9999999983 2 245678899999999999999965 14689999999999
Q ss_pred CCCCCCCCeeec--CCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHH----HHh------HHHHhhcccc
Q 007799 55 DPASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYE----EYG------ENFVDMLDGM 120 (589)
Q Consensus 55 d~~~~~QP~~~~--~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~----~~G------~~~l~~l~G~ 120 (589)
|...+.||+... +++++++|||+|||+.+||++| .|+.|+|.||||+|++++. ++| .+++++|+|+
T Consensus 79 G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~ 158 (442)
T PRK08341 79 GSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGA 158 (442)
T ss_pred CCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCc
Confidence 987899999764 4789999999999999999999 5899999999999987653 334 2468999999
Q ss_pred eEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccccccceeeCCccEEEeCCCceeEee--CCC----
Q 007799 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWY--NPT---- 194 (589)
Q Consensus 121 Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~~~~y~--~p~---- 194 (589)
|||++.+. ++++++||++|+|||||+.. + .++||||.++|...+..|+.|+||+++.++.++++.+. .+.
T Consensus 159 yal~i~~~--~~l~a~RD~~GirPL~~G~~-~-~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g~~~~~~~~~~~~~C 234 (442)
T PRK08341 159 YSVAILFD--GKIIVARDPVGFRPLSYGEG-D-GHYFASEDSALRMFVNEIRDVFPGEVFVVSEGEVESKVLAREKHHHC 234 (442)
T ss_pred eEEEEEEC--CEEEEEEcCCCceEEEEEEC-C-EEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCceEEEeeccCCCccc
Confidence 99999986 78999999999999999973 4 58999999999988889999999999887755443211 100
Q ss_pred ---CCCCCCCC---CCCcHHHHHHHHHHHHHhhhcc--CCceEEeecCC
Q 007799 195 ---WYSEAIPS---TPYDPLVLRQAFENAVIKRLMT--DVPFGVLLSGG 235 (589)
Q Consensus 195 ---~~~~~~~~---~~~~~~~lr~~l~~aV~~rl~s--d~pvgv~LSGG 235 (589)
|.....|+ ....+...|..+-+........ |.-+++.+||-
T Consensus 235 ~fe~iYfarpds~~~g~~v~~~R~~~G~~La~~~~~~~D~Vv~VPdsg~ 283 (442)
T PRK08341 235 VFEYIYFARPDSVIDGVSVYSARYRMGVELARESPAEGDVVIAVPDSGR 283 (442)
T ss_pred eEEEEEecCCccccCCcCHHHHHHHHHHHhhcccCCCCceEEEecCchH
Confidence 00001222 1233556777776666655433 44455656665
No 22
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.9e-33 Score=300.20 Aligned_cols=235 Identities=25% Similarity=0.362 Sum_probs=182.7
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai 53 (589)
||||+|+++.++ ....+..++.+|+|||||+.|+... +++++||+|+++
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT 86 (471)
T PRK06781 11 ECGVFGIWGHEN----AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYAT 86 (471)
T ss_pred cCeEEEEEcCcc----HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEccc
Confidence 999999998642 2356668999999999999998741 346899999999
Q ss_pred cCC--CCCCCCeee--cCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh--------HHHHhhccc
Q 007799 54 IDP--ASGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (589)
Q Consensus 54 ~d~--~~~~QP~~~--~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G--------~~~l~~l~G 119 (589)
.|. ..+.||+.. .+++++++|||+|||+.+||++| .|+.|++.||||+|+++|.+++ .+++++|+|
T Consensus 87 ~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G 166 (471)
T PRK06781 87 AGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKG 166 (471)
T ss_pred CCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 996 368999964 46789999999999999999999 5889999999999999998876 567899999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeCCCceeE--eeCCCCC
Q 007799 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKR--WYNPTWY 196 (589)
Q Consensus 120 ~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~~~~--y~~p~~~ 196 (589)
+|||+++|. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++. +..+...
T Consensus 167 ~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~~~~~ 243 (471)
T PRK06781 167 AFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTNEVDH 243 (471)
T ss_pred cEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCcCccc
Confidence 999999996 78999999999999999986 6689999999999754 3568889999998876544332 2221110
Q ss_pred --------CCCCCCC---CCcHHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHH
Q 007799 197 --------SEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASIT 245 (589)
Q Consensus 197 --------~~~~~~~---~~~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala 245 (589)
....|+. ...+.+.|..+-+...+....+.. .+.|--||+..+|..
T Consensus 244 ~~C~fE~vYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D---~vv~VP~s~~~~A~~ 300 (471)
T PRK06781 244 AICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEAD---VVTGVPDSSISAAIG 300 (471)
T ss_pred ccceEEEEEecCCCceeCCEEHHHHHHHHHHHHhhhCCCCCc---EEEEcChhHHHHHHH
Confidence 0122322 234667888887777766543322 345567788776643
No 23
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-33 Score=304.94 Aligned_cols=228 Identities=21% Similarity=0.321 Sum_probs=178.5
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai 53 (589)
||||+|+++.+.+ ....+..++.+|+|||+|+.|+... ++++|||+|+++
T Consensus 23 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT 99 (510)
T PRK07847 23 ECGVFGVWAPGEE---VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYST 99 (510)
T ss_pred cCeEEEEECCCcC---HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCc
Confidence 9999999986422 2456678999999999999998652 246999999999
Q ss_pred cCCC--CCCCCeeec---CCcEEEEEEEEECChHHHHHHh--cCC-----CCCCCChHHHHHHHHHHHhH---------H
Q 007799 54 IDPA--SGDQPLYNE---DKKIVVTVNGEIYNHEALRERL--TNH-----KFRTGSDCDVIAHLYEEYGE---------N 112 (589)
Q Consensus 54 ~d~~--~~~QP~~~~---~~~~~l~~NGeIyN~~eL~~~l--~~~-----~~~t~sD~Evil~ly~~~G~---------~ 112 (589)
.+.. .+.|||... .++++++|||+|||+.+||++| .++ .|++.||+|+|++++.+++. +
T Consensus 100 ~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~ 179 (510)
T PRK07847 100 TGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALE 179 (510)
T ss_pred CCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 9964 589999753 6789999999999999999999 355 48999999999999988763 5
Q ss_pred HHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeCCCc--eeE
Q 007799 113 FVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG--LKR 189 (589)
Q Consensus 113 ~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~--~~~ 189 (589)
++++++|+|||+++|. ++++++||++|+|||||++. ++.++||||.++|... ++.|+.|+||+++.++.++ ..+
T Consensus 180 ~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~ 256 (510)
T PRK07847 180 LLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTR 256 (510)
T ss_pred HHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEe
Confidence 8999999999999997 78999999999999999986 6679999999999875 6889999999999886543 334
Q ss_pred eeCCCCC-------CCCCCC---CCCcHHHHHHHHHHHHHhhhcc--CCceEEeecC
Q 007799 190 WYNPTWY-------SEAIPS---TPYDPLVLRQAFENAVIKRLMT--DVPFGVLLSG 234 (589)
Q Consensus 190 y~~p~~~-------~~~~~~---~~~~~~~lr~~l~~aV~~rl~s--d~pvgv~LSG 234 (589)
+|.+... ....|+ ....+.+.|..+-+...+.... |.=++|.+||
T Consensus 257 ~~~~~~~~C~fE~vYfarpdS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~sG 313 (510)
T PRK07847 257 FAEPTPKGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESG 313 (510)
T ss_pred ccCCCCCCCeEEEEEecCCcceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCch
Confidence 5543210 012232 2335667777777766665432 3334555553
No 24
>PLN02440 amidophosphoribosyltransferase
Probab=100.00 E-value=7.2e-33 Score=300.90 Aligned_cols=180 Identities=26% Similarity=0.393 Sum_probs=156.6
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEE---------------------------eCCEEEEEeeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAI 53 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~---------------------------~~~~~l~h~RLai 53 (589)
||||+|+++.++ ....+..|+.+|+|||||+.|+.. .+++++||+|+++
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (479)
T PLN02440 1 ECGVVGIFGDPE----ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYST 76 (479)
T ss_pred CceEEEEECCcc----HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccc
Confidence 999999997431 245678899999999999999875 2357999999999
Q ss_pred cCC--CCCCCCeee--cCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHH--------hHHHHhhccc
Q 007799 54 IDP--ASGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY--------GENFVDMLDG 119 (589)
Q Consensus 54 ~d~--~~~~QP~~~--~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~--------G~~~l~~l~G 119 (589)
.+. ..+.|||.. .+++++++|||+|+|+.+||++| .|+.|++.||+|+|+++|.++ +.+++++|+|
T Consensus 77 ~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G 156 (479)
T PLN02440 77 AGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKG 156 (479)
T ss_pred cCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 996 468999985 45789999999999999999999 578899999999999999875 5789999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeCCCc
Q 007799 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (589)
Q Consensus 120 ~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~ 186 (589)
+||+++||. ++++++|||+|+|||||+...++.++||||.++|... .+.|+.|+||+++.++.++
T Consensus 157 ~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g 222 (479)
T PLN02440 157 AYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDK 222 (479)
T ss_pred ceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCC
Confidence 999999996 6799999999999999997545689999999999875 5778999999998876443
No 25
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=1.9e-32 Score=276.33 Aligned_cols=182 Identities=26% Similarity=0.423 Sum_probs=157.6
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeeec
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai~ 54 (589)
|||+|+++.+. ....+..|+.+|+|||||+.|++.. ++++|||+|+++.
T Consensus 1 Cgi~g~~~~~~----~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~ 76 (252)
T cd00715 1 CGVFGIYGAED----AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTA 76 (252)
T ss_pred CEEEEEECCcc----hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccC
Confidence 99999998632 2356778999999999999998753 2468999999999
Q ss_pred CC--CCCCCCeee--cCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHhH---------HHHhhccc
Q 007799 55 DP--ASGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE---------NFVDMLDG 119 (589)
Q Consensus 55 d~--~~~~QP~~~--~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G~---------~~l~~l~G 119 (589)
+. ..+.|||.. .+++++++|||+|||+.+|+++| .++.+.+.||+|+|+++|.+++. +++++|+|
T Consensus 77 g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G 156 (252)
T cd00715 77 GSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKG 156 (252)
T ss_pred CCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccC
Confidence 96 358999986 35789999999999999999999 47788999999999999999984 58999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeCCCceeE
Q 007799 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKR 189 (589)
Q Consensus 120 ~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~~~~ 189 (589)
+|+++++|. ++++++||++|++||||+...++.++||||.++|... .+.+++|||||++.++.++...
T Consensus 157 ~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~~ 225 (252)
T cd00715 157 AYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLES 225 (252)
T ss_pred ceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceEE
Confidence 999999998 8899999999999999998643789999999999875 6789999999999887554433
No 26
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=8.9e-33 Score=311.88 Aligned_cols=179 Identities=29% Similarity=0.479 Sum_probs=159.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEE---------------------------eCCEEEEEeeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAI 53 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~---------------------------~~~~~l~h~RLai 53 (589)
||||+|+++.+. ....+..|+.+|+|||||+.|++. .++++|||+||++
T Consensus 1 MCGI~g~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at 76 (604)
T PRK00331 1 MCGIVGYVGQRN----AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWAT 76 (604)
T ss_pred CcEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCC
Confidence 999999997542 246678899999999999999986 2357999999999
Q ss_pred cCC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHH---h-------HHHHhhccc
Q 007799 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY---G-------ENFVDMLDG 119 (589)
Q Consensus 54 ~d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~---G-------~~~l~~l~G 119 (589)
.|. ..+.||+.+.+++++++|||+|||+++||++| .|+.|.+.||+|+|+++|.++ | .+++++|+|
T Consensus 77 ~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G 156 (604)
T PRK00331 77 HGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEG 156 (604)
T ss_pred CCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccC
Confidence 996 46899999877899999999999999999999 589999999999999999987 5 568999999
Q ss_pred ceEEEEEECCC-CEEEEEEcCCCCceeEEEEecCceEEEEcCccccccccccceeeCCccEEEeCCCce
Q 007799 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (589)
Q Consensus 120 ~Fa~vi~D~~~-~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~~ 187 (589)
+|||++||..+ ++++++||+ +||||+.. ++.++||||.++|......+..|+||+++.++.+++
T Consensus 157 ~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~~~~ 221 (604)
T PRK00331 157 AYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRRVIYLEDGEIAVLTRDGV 221 (604)
T ss_pred eeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCeEEEEECCeE
Confidence 99999999886 899999996 99999986 678999999999999889999999999988754444
No 27
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.3e-31 Score=290.48 Aligned_cols=182 Identities=25% Similarity=0.392 Sum_probs=156.5
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai 53 (589)
||||+|+++.+.. .....+..++.+|+|||+|+.|+... +++++||+|+++
T Consensus 14 mCGI~Gi~~~~~~--~~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT 91 (469)
T PRK05793 14 ECGVFGVFSKNNI--DVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYST 91 (469)
T ss_pred CCeEEEEEcCCCc--cHHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeeccc
Confidence 9999999986431 23456777899999999999998742 357899999999
Q ss_pred cCC--CCCCCCeeec--CCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh--------HHHHhhccc
Q 007799 54 IDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (589)
Q Consensus 54 ~d~--~~~~QP~~~~--~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G--------~~~l~~l~G 119 (589)
.|. ..+.||+... +++++++|||+|||+.+||++| .|+.|++.||+|+|++++.+++ .+++++|+|
T Consensus 92 ~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G 171 (469)
T PRK05793 92 TGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKG 171 (469)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Confidence 996 4589999864 6889999999999999999999 5889999999999999999875 368999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeCCCce
Q 007799 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGL 187 (589)
Q Consensus 120 ~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~~ 187 (589)
+|++++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.+++
T Consensus 172 ~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~ 237 (469)
T PRK05793 172 SYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGI 237 (469)
T ss_pred hceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCce
Confidence 999999986 78999999999999999986 6789999999999754 35788999999988765443
No 28
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=2.9e-32 Score=273.68 Aligned_cols=174 Identities=28% Similarity=0.378 Sum_probs=149.6
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCC-CCCceEEe------------------------------------CCE
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGP-DWSGLYQH------------------------------------GDF 44 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGp-D~~g~~~~------------------------------------~~~ 44 (589)
|||+|+++.++.. .....+..|+.+|+|||| |+.|++.. +++
T Consensus 1 CGI~G~~~~~~~~-~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~ 79 (249)
T cd01907 1 CGIFGIMSKDGEP-FVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYH 79 (249)
T ss_pred CcEEEEEecCCcc-ccHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEE
Confidence 9999999874211 234677899999999999 99999873 347
Q ss_pred EEEEeeeeecCC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHH----HhH-----
Q 007799 45 YLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE----YGE----- 111 (589)
Q Consensus 45 ~l~h~RLai~d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~----~G~----- 111 (589)
+|||+|+++.+. ..+.||+... +++++|||+|||+.+||++| .|+.|.+.||+|+|+++|.+ +|.
T Consensus 80 ~igH~R~aT~g~~~~~n~qP~~~~--~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~ 157 (249)
T cd01907 80 WIAHTRQPTNSAVWWYGAHPFSIG--DIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYY 157 (249)
T ss_pred EEEEEeccCCCCCCccCCCCeecC--CEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHH
Confidence 999999999885 3589999864 79999999999999999999 58899999999999999864 342
Q ss_pred --------------------HHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc----
Q 007799 112 --------------------NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD---- 167 (589)
Q Consensus 112 --------------------~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~---- 167 (589)
.++++++|+|||+++++ +.++++|||+|.|||||+.. ++.++||||.++|...
T Consensus 158 ~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~ 234 (249)
T cd01907 158 KHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRD 234 (249)
T ss_pred HHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccc
Confidence 46789999999999997 67999999999999999986 6789999999999876
Q ss_pred cccceeeCCccEEE
Q 007799 168 CEHFEAFPPGHLYS 181 (589)
Q Consensus 168 ~~~I~~lpPG~~~~ 181 (589)
.+.+..+.||+++.
T Consensus 235 ~~~~~~l~pGe~v~ 248 (249)
T cd01907 235 NAKVWEPRPGEYVI 248 (249)
T ss_pred hheEecCCCCceEe
Confidence 47888999999874
No 29
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.98 E-value=5.9e-32 Score=305.39 Aligned_cols=179 Identities=30% Similarity=0.487 Sum_probs=158.0
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEE---------------------------eCCEEEEEeeeeec
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAII 54 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~---------------------------~~~~~l~h~RLai~ 54 (589)
|||+|+++... ..+.+..|+.+|+|||||++|++. .++++|||+||+|.
T Consensus 1 CGI~g~~~~~~----~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (607)
T TIGR01135 1 CGIVGYIGQRD----AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATH 76 (607)
T ss_pred CeEEEEECCcc----HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCC
Confidence 99999997432 235678899999999999999987 23579999999999
Q ss_pred CC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHhH----------HHHhhcccc
Q 007799 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDGM 120 (589)
Q Consensus 55 d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G~----------~~l~~l~G~ 120 (589)
|. ..+.|||...+++++++|||+|||+.+||++| .|+.|++.||+|+|+++|.++|. +++++|+|+
T Consensus 77 g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~ 156 (607)
T TIGR01135 77 GKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGA 156 (607)
T ss_pred CCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCc
Confidence 96 46899999888889999999999999999999 48899999999999999999886 689999999
Q ss_pred eEEEEEECCC-CEEEEEEcCCCCceeEEEEecCceEEEEcCccccccccccceeeCCccEEEeCCCcee
Q 007799 121 FSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (589)
Q Consensus 121 Fa~vi~D~~~-~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~~~ 188 (589)
|||++||..+ ++++++||+ |||||+.. ++.++||||.++|...+..+..|+||+++.++.++.+
T Consensus 157 ~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~~~~ 221 (607)
T TIGR01135 157 YALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRRVIYLEDGDIAILTRDGVR 221 (607)
T ss_pred eEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCEEEEeCCCeEEEEECCeeE
Confidence 9999999875 469999996 99999985 6789999999999998889999999999887644433
No 30
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=8e-32 Score=294.58 Aligned_cols=179 Identities=25% Similarity=0.422 Sum_probs=151.5
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEE---------------------------eCCEEEEEeeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAI 53 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~---------------------------~~~~~l~h~RLai 53 (589)
||||+|+++.+. ....+..|+.+|+|||||+.|++. .++++|||+|+++
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (501)
T PRK09246 1 MCGIVGIVGHSP----VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPT 76 (501)
T ss_pred CceEEEEEcCcC----HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCc
Confidence 999999997632 235677899999999999999986 2568999999999
Q ss_pred cCC--CCCCCCee-ecCCcEEEEEEEEECChHHHHHHh-c--CCCCCCCChHHHHHHHHHHHh-----------------
Q 007799 54 IDP--ASGDQPLY-NEDKKIVVTVNGEIYNHEALRERL-T--NHKFRTGSDCDVIAHLYEEYG----------------- 110 (589)
Q Consensus 54 ~d~--~~~~QP~~-~~~~~~~l~~NGeIyN~~eL~~~l-~--~~~~~t~sD~Evil~ly~~~G----------------- 110 (589)
.|. ..+.|||. +..++++++|||+|||+++||++| . ++.|+|.||+|+|+++|.++.
T Consensus 77 ~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai 156 (501)
T PRK09246 77 AGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAV 156 (501)
T ss_pred CCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHH
Confidence 996 46899997 344459999999999999999999 3 568999999999999998762
Q ss_pred HHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEec---CceEEEEcCccccccc-cccceeeCCccEEEeCC
Q 007799 111 ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKS 184 (589)
Q Consensus 111 ~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~---~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~ 184 (589)
.+++++|+|+||++++.. .++++++|||+|+|||||+... ++.++||||.++|... .+.|+.|+||+++.++.
T Consensus 157 ~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~ 233 (501)
T PRK09246 157 AAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITE 233 (501)
T ss_pred HHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEEC
Confidence 157899999999997743 3579999999999999999852 3479999999999874 46688999999988764
No 31
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.98 E-value=7.8e-32 Score=258.98 Aligned_cols=129 Identities=23% Similarity=0.397 Sum_probs=113.5
Q ss_pred CCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHhHHHHhhcccceEEEEEECCCCEEEEEE
Q 007799 60 DQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVAR 137 (589)
Q Consensus 60 ~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aR 137 (589)
.|++.. +++++++||||||+.||+++| .++.|++.||+|+|+++|++||.+++++|+|||||+|||++ ++++++|
T Consensus 44 ~~~~~~--~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G~~~l~~L~G~FAfai~D~~-~~L~laR 120 (199)
T cd01909 44 VQVARS--ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLGLHAFRLAEGDFCFFIEDGN-GRLTLAT 120 (199)
T ss_pred eeEeeC--CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHhHHHHHHcCEEEEEEEEcCC-CEEEEEE
Confidence 455543 469999999999999999999 57889999999999999999999999999999999999999 9999999
Q ss_pred cCCCCceeEEEEecCceEEEEcCccccccc------------------cccceeeCCccEEEeC-C------CceeEeeC
Q 007799 138 DAIGITSLYIGWGLDGSIWISSELKGLNDD------------------CEHFEAFPPGHLYSSK-S------GGLKRWYN 192 (589)
Q Consensus 138 D~~G~~PLyy~~~~~g~~~faSe~k~L~~~------------------~~~I~~lpPG~~~~~~-~------~~~~~y~~ 192 (589)
||+|+|||||... +.++||||+|+|... +++|++|||||++.++ + ...++||.
T Consensus 121 Dr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~~~~~~~~~yW~ 198 (199)
T cd01909 121 DHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGSYGTAESRRTWT 198 (199)
T ss_pred CCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcccceEEEEEeec
Confidence 9999999999874 789999999999642 5789999999998654 2 13678997
Q ss_pred C
Q 007799 193 P 193 (589)
Q Consensus 193 p 193 (589)
|
T Consensus 199 p 199 (199)
T cd01909 199 P 199 (199)
T ss_pred C
Confidence 6
No 32
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.97 E-value=6.5e-31 Score=253.40 Aligned_cols=138 Identities=29% Similarity=0.562 Sum_probs=123.8
Q ss_pred CCeeecCCcEEEEEEEEECChHHHHHHhcCCCCCCCChHHHHHHHHHHH---h----HHHHhhcccceEEEEEECCCCEE
Q 007799 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY---G----ENFVDMLDGMFSFVLLDTRDNSF 133 (589)
Q Consensus 61 QP~~~~~~~~~l~~NGeIyN~~eL~~~l~~~~~~t~sD~Evil~ly~~~---G----~~~l~~l~G~Fa~vi~D~~~~~l 133 (589)
|=+.+.++++++++||||||+.+|+++|. . .++.||+|+|+++|++| | .+++++|+|||||||||.+++++
T Consensus 64 ~rl~~~~~~~~~vfnGeIyN~~eLr~~lg-~-~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l 141 (224)
T cd01910 64 PRLFAVKDDIFCLFQGHLDNLGSLKQQYG-L-SKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTV 141 (224)
T ss_pred CcEECCCCCEEEEEEeEEcCHHHHHHHhC-C-CCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEE
Confidence 44666778899999999999999999983 2 37889999999999998 7 57999999999999999999999
Q ss_pred EEEEcCCCCceeEEEEecCceEEEEcCcccccccc-ccceeeCCccEEEeCCCceeEeeCCCCCCCCCC
Q 007799 134 IVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIP 201 (589)
Q Consensus 134 ~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~-~~I~~lpPG~~~~~~~~~~~~y~~p~~~~~~~~ 201 (589)
++|||++|++||||++..+|.++||||+|+|...| +.+..|||||++.. .+++++|++|.|....+|
T Consensus 142 ~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~~~~~~vp 209 (224)
T cd01910 142 FVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPMNKLKAVP 209 (224)
T ss_pred EEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCCchhhcCC
Confidence 99999999999999987689999999999999999 78999999999986 678999999999754444
No 33
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.97 E-value=1e-30 Score=282.10 Aligned_cols=226 Identities=25% Similarity=0.362 Sum_probs=175.4
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeeec
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai~ 54 (589)
|||+|+++.+.+ ....+..|+.+|+|||||+.|++.. ++++|||+|+++.
T Consensus 1 CGI~Gi~~~~~~---~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~ 77 (442)
T TIGR01134 1 CGVVGIYSQEED---AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTA 77 (442)
T ss_pred CEEEEEEcCCcc---HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCC
Confidence 999999986432 2456778999999999999999752 3589999999999
Q ss_pred CC--CCCCCCeee-cCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh----------HHHHhhccc
Q 007799 55 DP--ASGDQPLYN-EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG----------ENFVDMLDG 119 (589)
Q Consensus 55 d~--~~~~QP~~~-~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G----------~~~l~~l~G 119 (589)
+. ..+.|||.. ..++++++|||+|+|+.+|+++| .|+.|++.||+|+|+++|.+++ .+++++|+|
T Consensus 78 G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G 157 (442)
T TIGR01134 78 GSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRG 157 (442)
T ss_pred CCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCc
Confidence 96 468999974 34459999999999999999999 5788999999999999999876 478999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCcccccc-ccccceeeCCccEEEeCCCceeEe-eCCCCCC
Q 007799 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND-DCEHFEAFPPGHLYSSKSGGLKRW-YNPTWYS 197 (589)
Q Consensus 120 ~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~-~~~~I~~lpPG~~~~~~~~~~~~y-~~p~~~~ 197 (589)
+|+|+++|. ++++++||++|+|||||+.. ++.++||||.++|.. ..+.++.|+||+++.++.++++.+ +.+....
T Consensus 158 ~falvi~~~--~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~~~~~~~~~ 234 (442)
T TIGR01134 158 AYALVIMIG--DGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESRLFANTPRA 234 (442)
T ss_pred cceEEEEEC--CEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEEeccCCCCc
Confidence 999999986 78999999999999999986 678999999999975 457899999999988776554332 1111000
Q ss_pred --------CCCCCC---CCcHHHHHHHHHHHHHhhhc--cCCceEEeec
Q 007799 198 --------EAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLS 233 (589)
Q Consensus 198 --------~~~~~~---~~~~~~lr~~l~~aV~~rl~--sd~pvgv~LS 233 (589)
...|+. ...+-+.|..+-+...+... .|.=+++..|
T Consensus 235 ~c~fe~vYfarpds~~~g~~v~~~R~~~g~~La~~~~~~~D~Vv~VP~s 283 (442)
T TIGR01134 235 PCIFEYVYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDS 283 (442)
T ss_pred ceEEEEEEecCCcceECCeEHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 012221 23455677777777766543 2333455555
No 34
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.97 E-value=1.3e-30 Score=295.34 Aligned_cols=183 Identities=28% Similarity=0.457 Sum_probs=158.2
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe----------------------------------CCEEE
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----------------------------------GDFYL 46 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~----------------------------------~~~~l 46 (589)
||||+|+++.++ ....+..++.+|+|||||++|+... +++++
T Consensus 24 MCGI~G~~~~~~----~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~i 99 (640)
T PTZ00295 24 CCGIVGYLGNED----ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGI 99 (640)
T ss_pred CCeEEEEEcCcc----hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEE
Confidence 999999998542 2456778999999999999999862 12589
Q ss_pred EEeeeeecCC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHH---Hh-------HH
Q 007799 47 AHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---YG-------EN 112 (589)
Q Consensus 47 ~h~RLai~d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~---~G-------~~ 112 (589)
||+||+|.|. ..+.||+.+.+++++++|||+|||+.+||++| .|+.|++.||||+|++++.+ +| .+
T Consensus 100 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~ 179 (640)
T PTZ00295 100 AHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKS 179 (640)
T ss_pred EEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999996 46899999777899999999999999999999 58999999999999999863 34 36
Q ss_pred HHhhcccceEEEEEECC-CCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccccccceeeCCccEEEeCCCceeEee
Q 007799 113 FVDMLDGMFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWY 191 (589)
Q Consensus 113 ~l~~l~G~Fa~vi~D~~-~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~~~~y~ 191 (589)
++++|+|+|||++||.. .++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.++++.|.
T Consensus 180 ~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 180 AISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNEYISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred HHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcEEEEeCCCeEEEEECCeEEEEe
Confidence 89999999999999976 4899999998 99999986 5689999999999988888889999999888766665554
No 35
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.97 E-value=3.5e-30 Score=254.15 Aligned_cols=179 Identities=37% Similarity=0.591 Sum_probs=156.2
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeC---------------------------CEEEEEeeeeec
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAII 54 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~---------------------------~~~l~h~RLai~ 54 (589)
|||+|+++.+............|...+.|||||+.|++..+ .++|+|+|+++.
T Consensus 1 Cgi~g~~~~~~~~~~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~ 80 (220)
T cd00352 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATN 80 (220)
T ss_pred CEEEEEECCCCcchhhHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeec
Confidence 99999998765432211111468899999999999998754 689999999999
Q ss_pred CC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh---------HHHHhhcccce
Q 007799 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG---------ENFVDMLDGMF 121 (589)
Q Consensus 55 d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G---------~~~l~~l~G~F 121 (589)
+. ..+.|||....++++++|||+|+|+.+|+++| .++.+.+.||+|+++++|.++| .+++++++|.|
T Consensus 81 g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 160 (220)
T cd00352 81 GLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPF 160 (220)
T ss_pred CCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccE
Confidence 86 56899998876789999999999999999998 4678889999999999999999 89999999999
Q ss_pred EEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCcccccccc-ccceeeCCccEE
Q 007799 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLY 180 (589)
Q Consensus 122 a~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~-~~I~~lpPG~~~ 180 (589)
+|+++|..+++++++||++|.+||||+...++.++||||..++...+ +.+.+++||+++
T Consensus 161 ~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 161 AFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred EEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 99999998899999999999999999986367899999999998765 789999999863
No 36
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.96 E-value=7.7e-30 Score=229.78 Aligned_cols=119 Identities=44% Similarity=0.755 Sum_probs=75.2
Q ss_pred EeeeeecCCCCCCCCee-ecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHH---HhHHHHhhcccce
Q 007799 48 HQRLAIIDPASGDQPLY-NEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---YGENFVDMLDGMF 121 (589)
Q Consensus 48 h~RLai~d~~~~~QP~~-~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~---~G~~~l~~l~G~F 121 (589)
|+||+|.+...+.||+. +.++++++++||||||+++|+++| .|+.+.+.+|+|+++++|++ ||.+++++|+|+|
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~~~~~~~l~G~f 80 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWGEDFLKRLDGPF 80 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HGGGGGGT--EEE
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 89999988788999999 678889999999999999999999 46888999999999999987 9999999999999
Q ss_pred EEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCcccccc
Q 007799 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND 166 (589)
Q Consensus 122 a~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~ 166 (589)
||++||+++++++++|||+|+|||||++.+++.++||||+++|++
T Consensus 81 a~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 81 AFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp EEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred EEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 999999999999999999999999999974369999999999863
No 37
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.96 E-value=2.6e-28 Score=275.75 Aligned_cols=183 Identities=20% Similarity=0.322 Sum_probs=155.7
Q ss_pred CeEEEEEEcCCC--CchHHHHHHHHHHHhhhhcCCCCCceEEe-----------------C-------------------
Q 007799 1 MCGILAVLGCSD--DSQAKRVRVLELSRRLKHRGPDWSGLYQH-----------------G------------------- 42 (589)
Q Consensus 1 McGI~gi~~~~~--~~~~~~~~~~~m~~~l~hRGpD~~g~~~~-----------------~------------------- 42 (589)
||||+|+++... ........+...+.+|+|||.|+.|+... +
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~ 80 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVF 80 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHh
Confidence 999999998641 00123567788899999999999988764 1
Q ss_pred -----------------CEEEEEeeeeecCC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHH
Q 007799 43 -----------------DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDV 101 (589)
Q Consensus 43 -----------------~~~l~h~RLai~d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Ev 101 (589)
+++|||+||+|.|. ..+.||+.+.+++++++|||+|||+.+||++| .|+.|+|.|||||
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEv 160 (670)
T PTZ00394 81 SEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEV 160 (670)
T ss_pred cchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHH
Confidence 26899999999997 46889999888999999999999999999999 6899999999999
Q ss_pred HHHH----HHHHhH--------HHHhhcccceEEEEEEC-CCCEEEEEEcCCCCceeEEEEecC----------------
Q 007799 102 IAHL----YEEYGE--------NFVDMLDGMFSFVLLDT-RDNSFIVARDAIGITSLYIGWGLD---------------- 152 (589)
Q Consensus 102 il~l----y~~~G~--------~~l~~l~G~Fa~vi~D~-~~~~l~~aRD~~G~~PLyy~~~~~---------------- 152 (589)
|+++ |+++|. +++++|+|+|||++... ..++++++||+ +||+++..++
T Consensus 161 i~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~ 237 (670)
T PTZ00394 161 ISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTD 237 (670)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccc
Confidence 9966 556673 78999999999999863 34899999999 9999998631
Q ss_pred ----ceEEEEcCccccccccccceeeCCccEEEeCCCc
Q 007799 153 ----GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGG 186 (589)
Q Consensus 153 ----g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~ 186 (589)
+.++|||++.+|...++.|..|++|++..+..+.
T Consensus 238 ~~~~~~~~~aSd~~a~~~~t~~~~~l~dg~~~~~~~~~ 275 (670)
T PTZ00394 238 LSGPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGA 275 (670)
T ss_pred cCCCCcEEEEeChHHHHHhhceEEEecCCeEEEEECCE
Confidence 4799999999999999999999999998776553
No 38
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.95 E-value=5.8e-28 Score=274.00 Aligned_cols=184 Identities=23% Similarity=0.416 Sum_probs=154.6
Q ss_pred CeEEEEEEcCCCC--chHHHHHHHHHHHhhhhcCCCCCceEEe-------------------------------------
Q 007799 1 MCGILAVLGCSDD--SQAKRVRVLELSRRLKHRGPDWSGLYQH------------------------------------- 41 (589)
Q Consensus 1 McGI~gi~~~~~~--~~~~~~~~~~m~~~l~hRGpD~~g~~~~------------------------------------- 41 (589)
||||+|+++...+ .......+...+.+|+|||.|+.|+...
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~ 80 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNL 80 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhcccccccc
Confidence 9999999985311 1123567788899999999999999862
Q ss_pred -----CCEEEEEeeeeecCC--CCCCCCeeec-CCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHH----HH
Q 007799 42 -----GDFYLAHQRLAIIDP--ASGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHL----YE 107 (589)
Q Consensus 42 -----~~~~l~h~RLai~d~--~~~~QP~~~~-~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~l----y~ 107 (589)
+++++||+||++.|. ..+.||+... .+.++++|||+|||+.+||++| .|+.|+|.||+|||+++ |+
T Consensus 81 ~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~ 160 (680)
T PLN02981 81 DLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFD 160 (680)
T ss_pred ccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHH
Confidence 137899999999996 4689999864 3789999999999999999999 68999999999999998 66
Q ss_pred HHhH------------HHHhhcccceEEEEEECCC-CEEEEEEcCCCCceeEEEEec--C--------------------
Q 007799 108 EYGE------------NFVDMLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWGL--D-------------------- 152 (589)
Q Consensus 108 ~~G~------------~~l~~l~G~Fa~vi~D~~~-~~l~~aRD~~G~~PLyy~~~~--~-------------------- 152 (589)
++|. +++++|+|+|||++.+... ++++++||+ +||+++..+ +
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (680)
T PLN02981 161 KLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDK 237 (680)
T ss_pred hcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCccccccccccccccccccccccc
Confidence 6653 3899999999999999653 899999997 999999862 1
Q ss_pred -ceEEEEcCccccccccccceeeCCccEEEeCCCce
Q 007799 153 -GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (589)
Q Consensus 153 -g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~~ 187 (589)
+.++||||..+|...++.|..|+||+++.++.+++
T Consensus 238 ~~~~~~aSe~~al~~~~~~~~~l~~gei~~i~~~~~ 273 (680)
T PLN02981 238 PKEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGGV 273 (680)
T ss_pred CCcEEEEeCHHHHHHhcCEEEEECCCeEEEEECCeE
Confidence 36999999999999999999999999988765443
No 39
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.6e-25 Score=231.96 Aligned_cols=237 Identities=25% Similarity=0.347 Sum_probs=178.6
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeC----------------------------CEEEEEeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~----------------------------~~~l~h~RLa 52 (589)
||||+||++.+.. ...+.+..++..|+|||+++.|+...+ ++++||+|++
T Consensus 4 ~CGV~Gi~~~~~~--~a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYs 81 (470)
T COG0034 4 MCGVFGIWGHKDN--NAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYS 81 (470)
T ss_pred cceEEEEecCCcc--chHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeec
Confidence 9999999998652 235667788999999999999997532 3488999999
Q ss_pred ecCC--CCCCCCeeec--CCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh---------HHHHhhc
Q 007799 53 IIDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG---------ENFVDML 117 (589)
Q Consensus 53 i~d~--~~~~QP~~~~--~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G---------~~~l~~l 117 (589)
+.|. ..+.|||..+ .+.+.|+|||.|-|..+||++| .|..|+|.||+|+|++++.+.. .+.++++
T Consensus 82 TaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v 161 (470)
T COG0034 82 TAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRV 161 (470)
T ss_pred CCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhc
Confidence 9996 3588999764 4569999999999999999999 5888999999999999997643 3577899
Q ss_pred ccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeC--CCcee--EeeC
Q 007799 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSK--SGGLK--RWYN 192 (589)
Q Consensus 118 ~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~--~~~~~--~y~~ 192 (589)
.|.|++++... +.++.+|||.|+|||.++...+|.++||||-.+|... .+-++.+.||+.+.+. ...+. ++..
T Consensus 162 ~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~~~~ 239 (470)
T COG0034 162 KGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQVAE 239 (470)
T ss_pred CCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEecCceeEEEeccC
Confidence 99999999987 6999999999999999998756779999999998765 4567899999998743 32232 2222
Q ss_pred CCCCC--------CCCCCC---CCcHHHHHHHHHHHHHhhhc--cCCceEEeecCCcchHHHHHHHH
Q 007799 193 PTWYS--------EAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLSGGLDSSLVASITA 246 (589)
Q Consensus 193 p~~~~--------~~~~~~---~~~~~~lr~~l~~aV~~rl~--sd~pvgv~LSGGLDSS~Iaala~ 246 (589)
+.... ...|+. ...+-..|..+-+...+... .|+ ..|=-||+.-+|+--
T Consensus 240 ~~~~~~C~fEyVYFARPDS~Idg~sVy~~R~~mG~~La~e~~~eaDv-----VipVPDSg~~aAig~ 301 (470)
T COG0034 240 PPRRAPCSFEYVYFARPDSVIDGISVYEARKRMGEKLAEEIPVEADV-----VIPVPDSGRPAAIGY 301 (470)
T ss_pred CCCCccceEEEEEeecCccccCCeeHHHHHHHHHHHHHHhCCccccE-----EEecCCCChHHHHHH
Confidence 21100 022321 22355666666555555432 233 334489998887754
No 40
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.94 E-value=1.6e-26 Score=210.18 Aligned_cols=127 Identities=36% Similarity=0.677 Sum_probs=116.8
Q ss_pred CCCCce--EEeCCEEEEEeeeeecCCC--CCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHH
Q 007799 33 PDWSGL--YQHGDFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLY 106 (589)
Q Consensus 33 pD~~g~--~~~~~~~l~h~RLai~d~~--~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly 106 (589)
||..++ +..+.++|||+|+|+.+.. .++|||.+.+++++++|||+|+|+.+|+++| .++.|++.||+|+|++++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li 80 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALI 80 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHH
Confidence 677777 6677899999999999974 4669997777889999999999999999999 488899999999999999
Q ss_pred HHHhHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcC
Q 007799 107 EEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (589)
Q Consensus 107 ~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe 160 (589)
+++|.+++++++|+|++++||...++++++||+.|.+||||+.. ++.++||||
T Consensus 81 ~~~g~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 81 HRWGEEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHHHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 99999999999999999999988899999999999999999986 788999998
No 41
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.92 E-value=2.3e-24 Score=216.46 Aligned_cols=182 Identities=22% Similarity=0.373 Sum_probs=149.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe----------------------------CCEEEEEeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----------------------------GDFYLAHQRLA 52 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~----------------------------~~~~l~h~RLa 52 (589)
||||+||+....- ..+. .+....-.|+|||+|+.|+... +++++||+|++
T Consensus 1 eCGv~Gi~~a~~~-~~l~-~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYs 78 (474)
T KOG0572|consen 1 ECGVFGIVAAGEA-SRLP-ELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYS 78 (474)
T ss_pred CCcEEEEEecCcc-ccCc-HHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecc
Confidence 9999999987543 2222 2222336899999999998753 36899999999
Q ss_pred ecCC--CCCCCCeee--cCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHH-----h----------H
Q 007799 53 IIDP--ASGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY-----G----------E 111 (589)
Q Consensus 53 i~d~--~~~~QP~~~--~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~-----G----------~ 111 (589)
+.+. ..+.|||+. ..|.+.++|||++-|+++||+++ .|+.+.|.||+|+|++++..- + .
T Consensus 79 TaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~ 158 (474)
T KOG0572|consen 79 TAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIR 158 (474)
T ss_pred cccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHH
Confidence 9986 358999975 45789999999999999999999 688999999999999988542 1 4
Q ss_pred HHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCc----eEEEEcCccccccc-cccceeeCCccEEEeCCCc
Q 007799 112 NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDG----SIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (589)
Q Consensus 112 ~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g----~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~ 186 (589)
++.+.++|.|+.++.-. ++++..|||+|.|||..+...+. .+++|||..++... .+-.+++.||+++.+....
T Consensus 159 ~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g 236 (474)
T KOG0572|consen 159 DVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNG 236 (474)
T ss_pred HHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecCC
Confidence 68899999999999887 67999999999999999976433 79999999999876 6678899999998776443
No 42
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=2.7e-23 Score=225.23 Aligned_cols=178 Identities=28% Similarity=0.456 Sum_probs=154.7
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeee
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai 53 (589)
||||+|+++.+.+ ....+.+.+++|.+||-|+.|+... +.+++||+||++
T Consensus 1 MCGIvG~i~~~~~---~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWAT 77 (597)
T COG0449 1 MCGIVGYIGFLRE---AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWAT 77 (597)
T ss_pred CCcEEEEEcCCcc---HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccC
Confidence 9999999975443 3567888999999999999998753 258899999999
Q ss_pred cCC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh--------HHHHhhcccce
Q 007799 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDGMF 121 (589)
Q Consensus 54 ~d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G--------~~~l~~l~G~F 121 (589)
.|. ..+++|..+ +++++||||-|-||.+||++| .|+.|+|++|||||.||++++= ...+++|.|.|
T Consensus 78 HG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsy 155 (597)
T COG0449 78 HGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSY 155 (597)
T ss_pred CCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhccee
Confidence 996 468999976 789999999999999999999 6999999999999999997642 35789999999
Q ss_pred EEEEEECCC-CEEEEEEcCCCCceeEEEEecCceEEEEcCccccccccccceeeCCccEEEeCCCce
Q 007799 122 SFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (589)
Q Consensus 122 a~vi~D~~~-~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~~ 187 (589)
|+++.|... ++++++|.- .||..+.. +|..++||++.++++..+.+..|..|.+..+..++.
T Consensus 156 al~~~~~~~p~~i~~ar~~---sPL~iG~g-~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v 218 (597)
T COG0449 156 ALLCTHSDFPDELVAARKG---SPLVIGVG-EGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGV 218 (597)
T ss_pred EEEEEecCCCCeEEEEcCC---CCeEEEec-CCcceEecChhhhhhhhceEEEeCCCCEEEEECCcE
Confidence 999999877 789999987 89999996 678899999999999999999999998866654433
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.76 E-value=8.6e-18 Score=168.71 Aligned_cols=174 Identities=23% Similarity=0.246 Sum_probs=132.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcCC------------CCCceEEe---------------------------
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGP------------DWSGLYQH--------------------------- 41 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGp------------D~~g~~~~--------------------------- 41 (589)
||+|+|+++.+. .+...+.+....|.+||- |+.|+...
T Consensus 1 MCr~~gy~g~~~---~l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l~~l~ 77 (251)
T TIGR03442 1 MCRHLAYLGAPV---SLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASLA 77 (251)
T ss_pred CceEeeecCCCe---eHHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCCCCCceEEeCCCccccChhHHHHH
Confidence 999999998631 234445555555555543 77776431
Q ss_pred ----CCEEEEEeeeeecCC---CCCCCCeeecCCcEEEEEEEEECChH-----HHHHHh--cCC-CCCCCChHHHHHHHH
Q 007799 42 ----GDFYLAHQRLAIIDP---ASGDQPLYNEDKKIVVTVNGEIYNHE-----ALRERL--TNH-KFRTGSDCDVIAHLY 106 (589)
Q Consensus 42 ----~~~~l~h~RLai~d~---~~~~QP~~~~~~~~~l~~NGeIyN~~-----eL~~~l--~~~-~~~t~sD~Evil~ly 106 (589)
..++++|.|.|+.+. ..+.|||.. ++++++|||.|-|++ +|+++| .++ .+.+.||+|+|++++
T Consensus 78 ~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li 155 (251)
T TIGR03442 78 RYVESGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALL 155 (251)
T ss_pred hhcccceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHH
Confidence 247899999999983 258999985 689999999999997 566666 343 788999999999988
Q ss_pred HHHhH------------HHHhhcccc-------eEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc
Q 007799 107 EEYGE------------NFVDMLDGM-------FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167 (589)
Q Consensus 107 ~~~G~------------~~l~~l~G~-------Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~ 167 (589)
.+... ++++.+.|. |+|++-|. +++++.||+. ||||+.. ++.++||||. |-..
T Consensus 156 ~~~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~ 227 (251)
T TIGR03442 156 LNRLLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD 227 (251)
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC
Confidence 76531 366777877 99999997 8999999996 9999986 5679999997 4332
Q ss_pred cccceeeCCccEEEeCCCcee
Q 007799 168 CEHFEAFPPGHLYSSKSGGLK 188 (589)
Q Consensus 168 ~~~I~~lpPG~~~~~~~~~~~ 188 (589)
..++.+|||+++.+..++++
T Consensus 228 -~~W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 228 -PGWQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred -CCceEeCCCeEEEEECCcEE
Confidence 48999999999988766543
No 44
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.67 E-value=5.9e-16 Score=156.73 Aligned_cols=134 Identities=24% Similarity=0.283 Sum_probs=112.2
Q ss_pred CEEEEEeeeeecCC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cC-CCCCCCChHHHHHHHHHHHh-------
Q 007799 43 DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN-HKFRTGSDCDVIAHLYEEYG------- 110 (589)
Q Consensus 43 ~~~l~h~RLai~d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~-~~~~t~sD~Evil~ly~~~G------- 110 (589)
.++|+|+|+|+.+. ..+.|||... +++++|||.|+|+.+|+..+ .+ +.+.+.+|+|++++++.+..
T Consensus 81 ~~~l~H~R~At~G~~~~~n~hPf~~~--~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~ 158 (257)
T cd01908 81 PLVLAHVRAATVGPVSLENCHPFTRG--RWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLD 158 (257)
T ss_pred cEEEEEEecCCCCCCccccCCCcccC--CEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcc
Confidence 57899999999995 4689999874 79999999999999999998 34 67899999999999886542
Q ss_pred --------HHHHhhcc-----cceEEEEEECCCCEEEEEEcCCCCceeEEEEec-----------------CceEEEEcC
Q 007799 111 --------ENFVDMLD-----GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL-----------------DGSIWISSE 160 (589)
Q Consensus 111 --------~~~l~~l~-----G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~-----------------~g~~~faSe 160 (589)
.+.++.|. |.|+|++.|. ++++++||+. .+||||.... ++.++||||
T Consensus 159 ~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE 235 (257)
T cd01908 159 PAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASE 235 (257)
T ss_pred hHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeC
Confidence 23567888 7899999887 7899999999 8999999863 368999999
Q ss_pred ccccccccccceeeCCccEEEeCC
Q 007799 161 LKGLNDDCEHFEAFPPGHLYSSKS 184 (589)
Q Consensus 161 ~k~L~~~~~~I~~lpPG~~~~~~~ 184 (589)
.-+... .++.+|||+++.++.
T Consensus 236 ~l~~~~---~w~~v~~ge~~~i~~ 256 (257)
T cd01908 236 PLTDDE---GWTEVPPGELVVVSE 256 (257)
T ss_pred CCCCCC---CceEeCCCEEEEEeC
Confidence 776654 799999999987654
No 45
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.67 E-value=1.6e-15 Score=159.13 Aligned_cols=111 Identities=29% Similarity=0.407 Sum_probs=85.7
Q ss_pred CEEEEEeeeeecCCC--CCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCC----------------CChHHHH
Q 007799 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRT----------------GSDCDVI 102 (589)
Q Consensus 43 ~~~l~h~RLai~d~~--~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t----------------~sD~Evi 102 (589)
.++|+|.|+++.+.. .++|||. +++|||||.|...+++.+ .+..+.+ .||+|++
T Consensus 196 ~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l 269 (361)
T PF00310_consen 196 HFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVL 269 (361)
T ss_dssp SEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHH
T ss_pred eEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHH
Confidence 689999999999864 4899997 799999999999999998 4666666 8999999
Q ss_pred HHHHHHH---h--------------------------------HHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEE
Q 007799 103 AHLYEEY---G--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI 147 (589)
Q Consensus 103 l~ly~~~---G--------------------------------~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy 147 (589)
.++++.. | ..+.+.++|.|++++-|. +.++++|||.|.||+.|
T Consensus 270 ~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP~~~ 347 (361)
T PF00310_consen 270 DNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRPLRY 347 (361)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S--EE
T ss_pred HHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcceEE
Confidence 7776532 2 124678999999999987 67999999999999999
Q ss_pred EEecCceEEEEcCc
Q 007799 148 GWGLDGSIWISSEL 161 (589)
Q Consensus 148 ~~~~~g~~~faSe~ 161 (589)
+..+|+.+++|||.
T Consensus 348 ~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 348 GITEDGLVVLASEA 361 (361)
T ss_dssp EEETTCEEEEESST
T ss_pred EEECCCEEEEEeCC
Confidence 99867889999983
No 46
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.65 E-value=1.7e-15 Score=158.20 Aligned_cols=186 Identities=23% Similarity=0.324 Sum_probs=133.9
Q ss_pred CeEEEEEEcCCCCc--hHHHHHHHHHHHhhhhcCCCCCceEEe-----------------------------------CC
Q 007799 1 MCGILAVLGCSDDS--QAKRVRVLELSRRLKHRGPDWSGLYQH-----------------------------------GD 43 (589)
Q Consensus 1 McGI~gi~~~~~~~--~~~~~~~~~m~~~l~hRGpD~~g~~~~-----------------------------------~~ 43 (589)
||||||+.+.-... ...-..+.+-+++|.+||-|+.|+..+ ..
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeee
Confidence 99999999864332 223345566788999999999998764 14
Q ss_pred EEEEEeeeeecCC--CCCCCCeee-cCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHH----Hh----
Q 007799 44 FYLAHQRLAIIDP--ASGDQPLYN-EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE----YG---- 110 (589)
Q Consensus 44 ~~l~h~RLai~d~--~~~~QP~~~-~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~----~G---- 110 (589)
++++|+|+|+-|. +.+.+|..+ ++..+++++||-|.||++|+..| +|+.|++.+|||+|..||+. .+
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~ 160 (670)
T KOG1268|consen 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLD 160 (670)
T ss_pred eeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCccc
Confidence 7899999999996 468999976 45679999999999999999999 69999999999999888864 23
Q ss_pred -----HHHHhhcccceEEEEEECC-CCEEEEEEcC----CCCce----------eEEEE--------e------------
Q 007799 111 -----ENFVDMLDGMFSFVLLDTR-DNSFIVARDA----IGITS----------LYIGW--------G------------ 150 (589)
Q Consensus 111 -----~~~l~~l~G~Fa~vi~D~~-~~~l~~aRD~----~G~~P----------Lyy~~--------~------------ 150 (589)
...+++++|.|++++-... -+++...|+- .|+|+ +-|+. .
T Consensus 161 F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~RrgSPlliGvKs~~kls~d~~~V~y~~~~~~~~~~~~~~d~~~~~~~~ 240 (670)
T KOG1268|consen 161 FHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKGSPLLIGVKSKTKLSVDFFPVEYGDTQEVSYLKLNKTDTKASLHFL 240 (670)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCCcceeeeccCCcceeeecccccccccceeeeccccceecccccCCcccccccccc
Confidence 3468899999999864322 2667777774 22221 22211 0
Q ss_pred cCc--eEEEEcCccccccccccceeeCCccEEEeCCCc
Q 007799 151 LDG--SIWISSELKGLNDDCEHFEAFPPGHLYSSKSGG 186 (589)
Q Consensus 151 ~~g--~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~ 186 (589)
.+. .++|||+..++..+.+.|--+.-+.+..+.+|+
T Consensus 241 ~~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG~ 278 (670)
T KOG1268|consen 241 AGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGE 278 (670)
T ss_pred cCCceEEEEecCcchhheecceeEEeccCcEEEEecCc
Confidence 011 567777777777766666666666655554443
No 47
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.64 E-value=3.2e-15 Score=157.78 Aligned_cols=134 Identities=22% Similarity=0.248 Sum_probs=109.4
Q ss_pred CEEEEEeeeeecCCC--CCCCCeeecCCcEEEEEEEEECChHHHHHHhc--C-----------------CCCCCCChHHH
Q 007799 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERLT--N-----------------HKFRTGSDCDV 101 (589)
Q Consensus 43 ~~~l~h~RLai~d~~--~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l~--~-----------------~~~~t~sD~Ev 101 (589)
.++|+|+|+||.+.. ..+|||. +|+|||||+|+..+++.+. . ....+.||+|+
T Consensus 202 ~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ 275 (413)
T cd00713 202 AFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSAS 275 (413)
T ss_pred EEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHH
Confidence 578999999999864 4789996 4899999999999998771 1 11236899999
Q ss_pred HHHHHHHH---h--------------------------------HHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeE
Q 007799 102 IAHLYEEY---G--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLY 146 (589)
Q Consensus 102 il~ly~~~---G--------------------------------~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLy 146 (589)
+.++++-. | ..+++.++|.|++++.|. +.++++|||.|.|||+
T Consensus 276 ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRPl~ 353 (413)
T cd00713 276 LDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRPAR 353 (413)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcceE
Confidence 98887532 2 134578999999999997 7899999999999999
Q ss_pred EEEecCceEEEEcCccccccccccce---eeCCccEEEeCC
Q 007799 147 IGWGLDGSIWISSELKGLNDDCEHFE---AFPPGHLYSSKS 184 (589)
Q Consensus 147 y~~~~~g~~~faSe~k~L~~~~~~I~---~lpPG~~~~~~~ 184 (589)
|+..+++.++||||..++....+.|. +|.||+++.++.
T Consensus 354 ~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~v~id~ 394 (413)
T cd00713 354 YVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDL 394 (413)
T ss_pred EEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeEEEEEC
Confidence 99876678999999999965566675 899999987654
No 48
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=99.54 E-value=2.2e-13 Score=129.29 Aligned_cols=131 Identities=31% Similarity=0.589 Sum_probs=112.0
Q ss_pred CcEEEEEEEEECChHHHHHHhcCCCCCCCChHHHHHHHHHHH---h----HHHHhhcccceEEEEEECCCCEEEEEEcCC
Q 007799 68 KKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY---G----ENFVDMLDGMFSFVLLDTRDNSFIVARDAI 140 (589)
Q Consensus 68 ~~~~l~~NGeIyN~~eL~~~l~~~~~~t~sD~Evil~ly~~~---G----~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~ 140 (589)
.++.++|-|.|.|-..|+++++ . -++.++.-+++++|+.. | .+.+..|+|.||||+||..++++++|||.-
T Consensus 75 DdIfCiF~G~L~Nl~~L~qqYG-L-sK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~ 152 (228)
T PF12481_consen 75 DDIFCIFLGSLENLCSLRQQYG-L-SKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSD 152 (228)
T ss_pred CCEEEEEecchhhHHHHHHHhC-c-CcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCC
Confidence 4689999999999999999982 2 25677888899999865 3 579999999999999999999999999999
Q ss_pred CCceeEEEEecCceEEEEcCccccccccc-cceeeCCccEEEeCCCceeEeeCCCCCCCCCC
Q 007799 141 GITSLYIGWGLDGSIWISSELKGLNDDCE-HFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIP 201 (589)
Q Consensus 141 G~~PLyy~~~~~g~~~faSe~k~L~~~~~-~I~~lpPG~~~~~~~~~~~~y~~p~~~~~~~~ 201 (589)
|..||||+...||.++||+++..|...|. ....||+|+++... +.++.|-+|.......|
T Consensus 153 G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~nk~k~~p 213 (228)
T PF12481_consen 153 GSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPKNKVKAMP 213 (228)
T ss_pred CCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCcccccccc
Confidence 99999999998899999999999988885 56789999998766 56788877766544443
No 49
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.44 E-value=7.2e-13 Score=123.60 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=88.0
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--eCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHH
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~ 304 (589)
.+.++||||+||+++++++.+... .++.++++ ++....+...++++|+. |++++.+.++.++..+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---------~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~ 72 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---------LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQL 72 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---------CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHH
Confidence 468999999999999999987541 24555554 44433467899999999 8887777777665443322
Q ss_pred HHH-hhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHH
Q 007799 305 EVI-YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFH 365 (589)
Q Consensus 305 ~~i-~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~ 365 (589)
..+ ...+.+. .......+..+.+.+++.|++++++|+++||+|+||.++...+..+.++
T Consensus 73 ~~l~~~~~~p~--~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~~Gy~~~~~~~~~~~~~ 132 (154)
T cd01996 73 ARFKAKVGDPC--WPCDTAIFTSLYKVALKFGIPLIITGENPAQEFGGIREEEGGIIDERRH 132 (154)
T ss_pred HHHhcccCCCC--hhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhcccccccccchhHHHHh
Confidence 221 1122221 2222344456778888999999999999999999999887766665554
No 50
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.33 E-value=1.1e-11 Score=130.53 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=87.0
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcc--eeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHH
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQL--HSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l--~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~ 304 (589)
.+.|.||||+|||++++++++... .++ .||+.++....+...++++++.+|++|+.+.++++++.+.+.
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~g---------l~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~ 131 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKLG---------LNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQR 131 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHhC---------CceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHH
Confidence 478899999999999988865442 233 455555543335669999999999999999998877666555
Q ss_pred HHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccccc
Q 007799 305 EVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (589)
Q Consensus 305 ~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~ 355 (589)
..+.....+. .......+..+.+.|++.|+++|++|+++||+||||..-
T Consensus 132 ~~~~~~~~pc--~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~fgGy~~~ 180 (343)
T TIGR03573 132 AYFKKVGDPE--WPQDHAIFASVYQVALKFNIPLIIWGENIAEEYGGDSEE 180 (343)
T ss_pred HHHhccCCCc--hhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHhcCCcccc
Confidence 5555433322 222234456778889999999999999999999998753
No 51
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=99.13 E-value=5.2e-10 Score=116.12 Aligned_cols=133 Identities=23% Similarity=0.227 Sum_probs=104.0
Q ss_pred CEEEEEeeeeecCCC--CCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHH---H------
Q 007799 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---Y------ 109 (589)
Q Consensus 43 ~~~l~h~RLai~d~~--~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~---~------ 109 (589)
.++|+|+|.++.... ..+|||. .++|||||.++.-.++.+ .++.+++..|+|++.+++-. .
T Consensus 203 ~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~~ 276 (371)
T COG0067 203 AIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSAS 276 (371)
T ss_pred eEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcchh
Confidence 478999999998763 4889996 369999999999999988 58999999999999887731 1
Q ss_pred -----------h--HHHHhhcccceEEEEEE-CCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccccccceeeC
Q 007799 110 -----------G--ENFVDMLDGMFSFVLLD-TRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFP 175 (589)
Q Consensus 110 -----------G--~~~l~~l~G~Fa~vi~D-~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~~~I~~lp 175 (589)
| ..-...+.|.||++.-. ...+.....+|+.+.+|.+-+.. +..|.++|+..|+++.+ -|.
T Consensus 277 ~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrn----gLr 351 (371)
T COG0067 277 LDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRN----GLR 351 (371)
T ss_pred hhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccC----CCC
Confidence 2 12345789999998753 22467888999999999998875 67899999999998643 477
Q ss_pred CccEEEeCCCc
Q 007799 176 PGHLYSSKSGG 186 (589)
Q Consensus 176 PG~~~~~~~~~ 186 (589)
|+.++..+++.
T Consensus 352 p~Ry~~t~d~~ 362 (371)
T COG0067 352 PARYWITKDGE 362 (371)
T ss_pred cceEEEecCCE
Confidence 88777655544
No 52
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.97 E-value=3.3e-09 Score=125.62 Aligned_cols=133 Identities=22% Similarity=0.202 Sum_probs=98.1
Q ss_pred CEEEEEeeeeecCCC--CCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCC----------------CCCCCChHHHH
Q 007799 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNH----------------KFRTGSDCDVI 102 (589)
Q Consensus 43 ~~~l~h~RLai~d~~--~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~----------------~~~t~sD~Evi 102 (589)
.++|.|.|.++.... ..+|||. .++|||||.-..-.++.+ .++ .-...||++.+
T Consensus 213 ~~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~l 286 (1485)
T PRK11750 213 AICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSL 286 (1485)
T ss_pred EEEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHH
Confidence 478999999999865 3689995 479999998655554443 111 11347899886
Q ss_pred HHHH---HHHh--------------------------------HHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEE
Q 007799 103 AHLY---EEYG--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI 147 (589)
Q Consensus 103 l~ly---~~~G--------------------------------~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy 147 (589)
-..+ -+.| ..+++-++|.|++++.|. +.+++.|||.|.|||.|
T Consensus 287 Dn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~ 364 (1485)
T PRK11750 287 DNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDG--RYAACNLDRNGLRPARY 364 (1485)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEeC--CEEEEecCCCCCccceE
Confidence 4433 3333 113455799999999997 89999999999999987
Q ss_pred EEecCceEEEEcCcccccccccc-ce--eeCCccEEEeC
Q 007799 148 GWGLDGSIWISSELKGLNDDCEH-FE--AFPPGHLYSSK 183 (589)
Q Consensus 148 ~~~~~g~~~faSe~k~L~~~~~~-I~--~lpPG~~~~~~ 183 (589)
+..+|+.+++|||..++.-.-.. ++ +|.||.++.++
T Consensus 365 ~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 365 VITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred EEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 77667789999999887644333 44 79999998664
No 53
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.95 E-value=6.6e-09 Score=104.97 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=80.7
Q ss_pred hhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC--CcHHHHHHHHHHhCCcceEEEeChh
Q 007799 220 KRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFTVQ 297 (589)
Q Consensus 220 ~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~D~~~A~~vA~~lg~~h~~v~~~~~ 297 (589)
..+....++.+++|||+||+++++++.+.. .++.++++..+.. .|...|+++|+++|++|+.+.+++
T Consensus 7 ~~l~~~~~vlVa~SGGvDSs~ll~la~~~g----------~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~- 75 (252)
T TIGR00268 7 NFLKEFKKVLIAYSGGVDSSLLAAVCSDAG----------TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDK- 75 (252)
T ss_pred HHHHhcCCEEEEecCcHHHHHHHHHHHHhC----------CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHH-
Confidence 344455679999999999999999998752 4688888865433 477899999999999999888743
Q ss_pred hhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccc
Q 007799 298 DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352 (589)
Q Consensus 298 ~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY 352 (589)
+.+.+ .. ...+....+....+-.+.+.+++.|++++++|+.+|+++.++
T Consensus 76 -~~~~~---~~--n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~r 124 (252)
T TIGR00268 76 -MINPF---RA--NVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHR 124 (252)
T ss_pred -HHHHH---Hh--CCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCccccccc
Confidence 21111 11 112211111222233466778889999999999999988643
No 54
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.91 E-value=1.2e-08 Score=102.75 Aligned_cols=132 Identities=23% Similarity=0.285 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHHhC
Q 007799 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLG 286 (589)
Q Consensus 209 ~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~lg 286 (589)
.+...|.+.|++. ....+.+.||||+||+++++++.+.... .+++++++.... ..|...|+++|+++|
T Consensus 9 ~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~~~~--------~~v~~~~~~~~~~~~~~~~~a~~~a~~lg 78 (248)
T cd00553 9 ALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRALGR--------ENVLALFMPSRYSSEETREDAKELAEALG 78 (248)
T ss_pred HHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHHhCc--------ccEEEEECCCCCCCHHHHHHHHHHHHHhC
Confidence 3444444444443 2346899999999999999999887631 368888887653 358899999999999
Q ss_pred CcceEEEeChhhhHHhHHHHHhhh--ccCcc---ccccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 287 TVHHEFHFTVQDGIDAIEEVIYHV--ETYDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 287 ~~h~~v~~~~~~~~~~l~~~i~~~--e~~~~---~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
++|+++.+++ ..+.+...+... +..+. ..+.+-+-+..+...+.+.|..|+-||+ .+|++.||.
T Consensus 79 i~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~G~~ 147 (248)
T cd00553 79 IEHVNIDIDP--AVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLLGYF 147 (248)
T ss_pred CeEEEeccHH--HHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHhCCe
Confidence 9999887543 233322222211 11111 1122223345566777888998999998 678888874
No 55
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.90 E-value=1e-08 Score=104.45 Aligned_cols=139 Identities=22% Similarity=0.344 Sum_probs=70.1
Q ss_pred CEEEEEeeeeecCC--CCCCCCeeec--CCcEEEEEEEEECChHHHHHHhcCCCCCCCChHHHHHHHHHHH----h----
Q 007799 43 DFYLAHQRLAIIDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY----G---- 110 (589)
Q Consensus 43 ~~~l~h~RLai~d~--~~~~QP~~~~--~~~~~l~~NGeIyN~~eL~~~l~~~~~~t~sD~Evil~ly~~~----G---- 110 (589)
.++|+|.|.|+.+. ..+.|||..+ .++++++|||.|++++.++... +.....+|+|.++.++... +
T Consensus 72 ~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~--~~~~G~TDSE~~F~lll~~l~~~~~~~~ 149 (271)
T PF13230_consen 72 RLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDR--YQPVGTTDSEHAFCLLLDQLRDRGPDAP 149 (271)
T ss_dssp EEEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHH--HT--S--HHHHHHHHHHHTTTTT-HH--
T ss_pred CEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccc--cccCCCcHHHHHHHHHHHHHHHhCCccc
Confidence 46899999999985 4589999853 3579999999999988776332 2346789999999887542 1
Q ss_pred ----------HHHHhhcc--cceEEEEEECCCCEEEEEEcC----CCCceeE-------------EE---EecCceEEEE
Q 007799 111 ----------ENFVDMLD--GMFSFVLLDTRDNSFIVARDA----IGITSLY-------------IG---WGLDGSIWIS 158 (589)
Q Consensus 111 ----------~~~l~~l~--G~Fa~vi~D~~~~~l~~aRD~----~G~~PLy-------------y~---~~~~g~~~fa 158 (589)
.+..+.+. |.+.|++.|. +.+++.|+. .-+++.| .. ...+..++||
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVa 227 (271)
T PF13230_consen 150 PALEELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVA 227 (271)
T ss_dssp HHHHHHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEE
T ss_pred ccHHHHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEE
Confidence 12333443 7788999998 789999982 1122221 00 0123567888
Q ss_pred cCccccccccccceeeCCccEEEeCCCcee
Q 007799 159 SELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (589)
Q Consensus 159 Se~k~L~~~~~~I~~lpPG~~~~~~~~~~~ 188 (589)
|| .|.. -+....+|+|+++.+..|++.
T Consensus 228 Se--PLt~-~e~W~~vp~g~~l~~~~G~v~ 254 (271)
T PF13230_consen 228 SE--PLTD-DEDWEPVPPGSLLVFRDGEVV 254 (271)
T ss_dssp SS-------SS--EE--SSEEEE-------
T ss_pred ec--cCCC-CCCeEEcCCCcEEEEeccccc
Confidence 88 3433 246999999999998887653
No 56
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.90 E-value=5.3e-09 Score=105.57 Aligned_cols=134 Identities=21% Similarity=0.213 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC---CCCcHHHHHHHH
Q 007799 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---GSPDLKYAKEVA 282 (589)
Q Consensus 206 ~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~---~~~D~~~A~~vA 282 (589)
..+++.+.|.++|+.+..+++ .+.||||+||+++++++.+... ..+.++.+... ...|...|+++|
T Consensus 5 ~~~~l~~~l~~~v~~~~~~~V--~vglSGGiDSsvla~l~~~~~~---------~~~~~~~~~~~~~~~~~e~~~a~~~a 73 (250)
T TIGR00552 5 YVEEIEDFLRGYVQKSGAKGV--VLGLSGGIDSAVVAALCVEALG---------EQNHALLLPHSVQTPEQDVQDALALA 73 (250)
T ss_pred HHHHHHHHHHHHHHHhCCCCE--EEECCCcHHHHHHHHHHHHhhC---------CceEEEEECCccCCCHHHHHHHHHHH
Confidence 457899999999999876555 4559999999999999987642 23344433221 124889999999
Q ss_pred HHhCCcceEEEeChhhhHHhHHHHHhhh-ccCc---cccccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-ETYD---VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 283 ~~lg~~h~~v~~~~~~~~~~l~~~i~~~-e~~~---~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
+.+|++|+.+.+++.. ..+....... +..+ ...+++-+-+..+...|.+.|+.++.||+.+ |++.||.
T Consensus 74 ~~lgi~~~~i~i~~~~--~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~-E~~~G~~ 145 (250)
T TIGR00552 74 EPLGINYKNIDIAPIA--ASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKS-ELMLGYF 145 (250)
T ss_pred HHhCCeEEEEcchHHH--HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHH-HHhhCCe
Confidence 9999999988765432 2111100000 0000 0112223456677788888999999999986 5566764
No 57
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.86 E-value=1.8e-08 Score=104.63 Aligned_cols=81 Identities=26% Similarity=0.292 Sum_probs=67.0
Q ss_pred CcHHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC----CCcHHHHHH
Q 007799 205 YDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----SPDLKYAKE 280 (589)
Q Consensus 205 ~~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~----~~D~~~A~~ 280 (589)
...+.+.+.|+++|++++.++ ++++.||||+|||++++++.+... ...+|++.++. .+|...|++
T Consensus 14 ~~~e~i~~~l~~~V~~~~~~~-~VvVgLSGGIDSSvvaaLa~~a~g----------~~~v~av~~~~~~s~~~e~~~A~~ 82 (326)
T PRK00876 14 AEAERIRAAIREQVRGTLRRR-GVVLGLSGGIDSSVTAALCVRALG----------KERVYGLLMPERDSSPESLRLGRE 82 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CEEEEccCCHHHHHHHHHHHHhhC----------CCcEEEEEecCCCCChHHHHHHHH
Confidence 345789999999999998877 899999999999999999987652 23456665543 358899999
Q ss_pred HHHHhCCcceEEEeCh
Q 007799 281 VADYLGTVHHEFHFTV 296 (589)
Q Consensus 281 vA~~lg~~h~~v~~~~ 296 (589)
+|+++|++|+.+.+++
T Consensus 83 lA~~LGi~~~~i~i~~ 98 (326)
T PRK00876 83 VAEHLGVEYVVEDITP 98 (326)
T ss_pred HHHHcCCCEEEEECch
Confidence 9999999999998875
No 58
>PRK13980 NAD synthetase; Provisional
Probab=98.84 E-value=2.3e-08 Score=101.74 Aligned_cols=133 Identities=24% Similarity=0.253 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHHh
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~l 285 (589)
+.+...+.+.|++.- ...+.+.||||+||+++++++.+.... .++.++++.... ..|...|+++|+++
T Consensus 15 ~~l~~~l~~~v~~~g--~~~vvv~lSGGiDSsv~a~l~~~~~~~--------~~v~av~~~~~~~~~~~~~~a~~la~~l 84 (265)
T PRK13980 15 EIIVDFIREEVEKAG--AKGVVLGLSGGIDSAVVAYLAVKALGK--------ENVLALLMPSSVSPPEDLEDAELVAEDL 84 (265)
T ss_pred HHHHHHHHHHHHHcC--CCcEEEECCCCHHHHHHHHHHHHHhCc--------cceEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 344445555554432 246888999999999999999886521 468888887543 34889999999999
Q ss_pred CCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 286 g~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
|++|+.+.+++ ..+.+...+...+......+.+.+.+..+...|.+.|..|+-||+.++.++ ||.
T Consensus 85 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~sE~~~-G~~ 149 (265)
T PRK13980 85 GIEYKVIEITP--IVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNKSELLL-GYF 149 (265)
T ss_pred CCCeEEEECHH--HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCHhHHHh-CCc
Confidence 99999887653 233322222111111111233344455677778888999999998876554 553
No 59
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.83 E-value=2.8e-08 Score=97.14 Aligned_cols=111 Identities=22% Similarity=0.302 Sum_probs=80.5
Q ss_pred cCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCC--cHHHHHHHHHHhCCcceEEEeChhhhHH
Q 007799 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDGID 301 (589)
Q Consensus 224 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~--D~~~A~~vA~~lg~~h~~v~~~~~~~~~ 301 (589)
....+.+.+|||.|||++|.+|.+.+ |.++.++|+..+-.+ +++-|+..|+.+|+.|..+.++.-+
T Consensus 16 ~~~kv~vAfSGGvDSslLa~la~~~l---------G~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~--- 83 (269)
T COG1606 16 EKKKVVVAFSGGVDSSLLAKLAKEAL---------GDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD--- 83 (269)
T ss_pred hcCeEEEEecCCccHHHHHHHHHHHh---------ccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc---
Confidence 33478999999999999999998877 467899999876544 7889999999999999998765322
Q ss_pred hHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccc
Q 007799 302 AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (589)
Q Consensus 302 ~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfg 350 (589)
++..+.. .+.+.++-..-.-.+-+.+.+.|..+|+.|-.+|++|+
T Consensus 84 --~~~~~n~--~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~ 128 (269)
T COG1606 84 --PEFKENP--ENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFD 128 (269)
T ss_pred --hhhccCC--CCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcC
Confidence 2332221 12111111111223556777889999999999999997
No 60
>PRK14561 hypothetical protein; Provisional
Probab=98.81 E-value=2.5e-08 Score=96.72 Aligned_cols=106 Identities=23% Similarity=0.256 Sum_probs=74.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHHH
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~ 306 (589)
+++++||||+||+++++++.+.. ...+.+|+.++ .+|..+|+++|+.+|++|+.+.++.+. .+...+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~~---------~v~a~t~~~g~--~~e~~~a~~~a~~lGi~~~~v~~~~~~-~~~~~~~ 69 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFY---------DVELVTVNFGV--LDSWKHAREAAKALGFPHRVLELDREI-LEKAVDM 69 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcC---------CeEEEEEecCc--hhHHHHHHHHHHHhCCCEEEEECCHHH-HHHHHHH
Confidence 48999999999999999886541 12345666655 468999999999999999999988754 5555555
Q ss_pred HhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 307 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 307 i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
.+..+.|... ...+..+++...+ .|+.+|.+|.-.|.+
T Consensus 70 ~~~~~~P~~~--~~~l~~~~l~~~a--~g~~~Ia~G~n~DD~ 107 (194)
T PRK14561 70 IIEDGYPNNA--IQYVHEHALEALA--EEYDVIADGTRRDDR 107 (194)
T ss_pred HHHcCCCCch--hHHHHHHHHHHHH--cCCCEEEEEecCCCc
Confidence 5555544321 1223334444433 789999999999884
No 61
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.79 E-value=2.3e-08 Score=97.56 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=75.7
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHH
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~ 305 (589)
|.+++|||+||++++.++.+.. +..+.++++.... ..|...++++|+++|++|+.+.++... ...+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---------~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~-- 68 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---------GDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEF-- 68 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---------CCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHH--
Confidence 4689999999999999998764 1367888875432 358889999999999999998876321 1111
Q ss_pred HHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccc
Q 007799 306 VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352 (589)
Q Consensus 306 ~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY 352 (589)
.. .............+-.+.+.+++.|+.++++|+.+|+.+.++
T Consensus 69 --~~-~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~ 112 (202)
T cd01990 69 --AK-NPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR 112 (202)
T ss_pred --hc-CCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC
Confidence 11 111111111122233456778889999999999999999764
No 62
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.67 E-value=1.2e-07 Score=100.15 Aligned_cols=113 Identities=20% Similarity=0.160 Sum_probs=80.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC------------CCcHHHHHHHHHHhCCcceEEEe
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG------------SPDLKYAKEVADYLGTVHHEFHF 294 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~------------~~D~~~A~~vA~~lg~~h~~v~~ 294 (589)
+|++++|||+||++++.++.+.. ..+.++++.... ..|...|+++|+.+|++|+.+.+
T Consensus 2 kVlValSGGvDSsvla~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~ 71 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQG----------YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDF 71 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 58999999999999999987642 468888886521 24788999999999999999988
Q ss_pred ChhhhHHhHHHHHh---hhccCccccccchHH-HHHHHHHHHhcCCeEEEeCCcchhcc
Q 007799 295 TVQDGIDAIEEVIY---HVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 295 ~~~~~~~~l~~~i~---~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
..+...+.+..++. ...++++...++... ...+.+.+++.|+..+.||+-+|...
T Consensus 72 ~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 72 EKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc
Confidence 65433333333332 223454444433323 33566788889999999999998764
No 63
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.63 E-value=1.9e-07 Score=98.68 Aligned_cols=113 Identities=22% Similarity=0.180 Sum_probs=77.8
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC----------CCCcHHHHHHHHHHhCCcceEEEeCh
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE----------GSPDLKYAKEVADYLGTVHHEFHFTV 296 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~----------~~~D~~~A~~vA~~lg~~h~~v~~~~ 296 (589)
+|++++|||+|||++++++.+.. ..+.++++... ...|...|+++|+.+|++|+.+.++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~g----------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~ 70 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQG----------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEK 70 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 37899999999999999997642 45666665321 12578999999999999999998876
Q ss_pred hhhHHhHHHHHhh---hccCccccccchHH-HHHHHHHHHhcCCeEEEeCCcchhcc
Q 007799 297 QDGIDAIEEVIYH---VETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 297 ~~~~~~l~~~i~~---~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
+...+.+...+.. -.++++...++... ...+.+.+.+.|+..+.||+-+|...
T Consensus 71 ~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~ 127 (349)
T cd01998 71 EYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE 127 (349)
T ss_pred HHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee
Confidence 5433333333322 13444433333322 23455778889999999999998765
No 64
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.63 E-value=2.1e-07 Score=89.17 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=76.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC--CC--CCcHHHHHHHHHHhCCcceEEEeChhhhHHh
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~--~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~ 302 (589)
++.+.+|||.||++++.++.+...+.. .+.++.++++.. .. ..+..+++++|+.+|++++.+.++.+. ..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~ 74 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP----YGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEY--TD 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC----CCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhc--ch
Confidence 378999999999999999987653210 013677777754 32 246789999999999999988876321 00
Q ss_pred HHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccc
Q 007799 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (589)
Q Consensus 303 l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfg 350 (589)
..... ...............++.+.+.+++.|+.++++|+.+|++..
T Consensus 75 ~~~~~-~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~e 121 (185)
T cd01993 75 DIEVK-KRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAE 121 (185)
T ss_pred hhhhh-ccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHH
Confidence 00000 000011111222344566778888999999999999999764
No 65
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.62 E-value=2.6e-07 Score=90.47 Aligned_cols=156 Identities=19% Similarity=0.290 Sum_probs=82.2
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--eCCCCCcHHHHHHHHHHhCC-cceEEEeC-hhhhH-Hh
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGT-VHHEFHFT-VQDGI-DA 302 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~D~~~A~~vA~~lg~-~h~~v~~~-~~~~~-~~ 302 (589)
.-++||||+||++.++.+.+.. ..++++++ |.....|++.|+++++++|+ +|+.+.++ ..++. ..
T Consensus 2 avvl~SGG~DSt~~l~~~~~~~----------~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~ 71 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKEG----------YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSA 71 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH-----------SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcC----------CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCc
Confidence 4689999999999999988765 46776666 44544599999999999999 99999887 22211 01
Q ss_pred HH-HH--Hhh----hccCcccc--ccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHHHHHHHHHH
Q 007799 303 IE-EV--IYH----VETYDVTT--IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIK 373 (589)
Q Consensus 303 l~-~~--i~~----~e~~~~~~--~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~ 373 (589)
+- +- +.. .+....+. .|+.+.+-+.+..|.+.|+..++.|--+++ +.||+.- ..+|.+.+.+.+.
T Consensus 72 L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D-~~~ypDc-----~~~F~~~~~~~~~ 145 (209)
T PF06508_consen 72 LTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAED-ASGYPDC-----RPEFIDAMNRLLN 145 (209)
T ss_dssp HHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-S-TT--GGG-----SHHHHHHHHHHHH
T ss_pred ccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCc-cCCCCCC-----hHHHHHHHHHHHH
Confidence 11 00 111 01111122 234443334456677789999999998877 5677643 2344443332222
Q ss_pred hhccccccccccccccCCceeecCCCCh---HHHHHHhcCC
Q 007799 374 ALHQYDCLRANKSTSAWGLEARVPFLDK---DFINVAMAID 411 (589)
Q Consensus 374 ~l~~~dllr~dr~~~a~gvE~R~PfLD~---~lve~a~slP 411 (589)
.. ....+.+..||++. +++..+..+.
T Consensus 146 ~~------------~~~~v~i~~P~~~~tK~eiv~~~~~lg 174 (209)
T PF06508_consen 146 LG------------EGGPVRIETPLIDLTKAEIVKLGVELG 174 (209)
T ss_dssp HH------------HTS--EEE-TTTT--HHHHHHHHHHTT
T ss_pred hc------------CCCCEEEEecCCCCCHHHHHHHHHHcC
Confidence 11 23468889999885 5666666554
No 66
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.61 E-value=2.3e-07 Score=92.02 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=88.9
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHHhCCc-ceEEEeChhhhH--H
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTV-HHEFHFTVQDGI--D 301 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~lg~~-h~~v~~~~~~~~--~ 301 (589)
++.+++|||+||+++++++.+.. ..+.++++.+.. ..|++.|+++|+++|++ |+.+.++.-..+ .
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~----------~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s 72 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQY----------DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVS 72 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcC----------CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 57899999999999999986532 367777776543 35899999999999996 888776632110 0
Q ss_pred hHHHH---Hh--hh--ccCccccc--cchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHHHHHHHHH
Q 007799 302 AIEEV---IY--HV--ETYDVTTI--RASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKI 372 (589)
Q Consensus 302 ~l~~~---i~--~~--e~~~~~~~--~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l 372 (589)
.+.+- +. .. +....+.+ |+.+..-+....|.+.|++.|+.|--+|+. ++|+- .+.+|.+.+.+.+
T Consensus 73 ~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~-~~YpD-----cr~~Fi~A~~~~~ 146 (231)
T PRK11106 73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDF-SGYPD-----CRDEFVKALNHAV 146 (231)
T ss_pred ccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcC-CCCCC-----CCHHHHHHHHHHH
Confidence 11000 00 00 10111122 222222223335778899999999999885 67763 3445555433222
Q ss_pred HhhccccccccccccccCCceeecCCCC
Q 007799 373 KALHQYDCLRANKSTSAWGLEARVPFLD 400 (589)
Q Consensus 373 ~~l~~~dllr~dr~~~a~gvE~R~PfLD 400 (589)
. ..+..++.+..||++
T Consensus 147 ~------------~~~~~~i~I~aPl~~ 162 (231)
T PRK11106 147 S------------LGMAKDIRFETPLMW 162 (231)
T ss_pred H------------hccCCCcEEEecCCC
Confidence 1 112235889999987
No 67
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.60 E-value=9.1e-08 Score=92.84 Aligned_cols=116 Identities=28% Similarity=0.361 Sum_probs=77.4
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--eCCCCCcHHHHHHHHHHhCCcceEEEeChhhhH--HhH
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI--DAI 303 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~--~~l 303 (589)
.-++||||+||+++++.|.+.. ..+++.|+ |.+..-|++.|+++|+.||++||.+.++.-.-+ .++
T Consensus 5 avvl~SGG~DStt~l~~a~~~~----------~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~saL 74 (222)
T COG0603 5 AVVLLSGGLDSTTCLAWAKKEG----------YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSAL 74 (222)
T ss_pred EEEEccCChhHHHHHHHHHhcC----------CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCcC
Confidence 4689999999999999998865 56776665 445556999999999999999998876532211 011
Q ss_pred H----HHHhh---hccCcccc--ccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccc
Q 007799 304 E----EVIYH---VETYDVTT--IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (589)
Q Consensus 304 ~----~~i~~---~e~~~~~~--~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~ 354 (589)
- ++... .++...+. .|+.+.+.+.+-.|...|++-+++|--+.+. .||+-
T Consensus 75 td~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~-sgYPD 133 (222)
T COG0603 75 TDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDF-SGYPD 133 (222)
T ss_pred cCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEeccccc-CCCCC
Confidence 0 11111 11111222 2445555556667778899999999888774 46764
No 68
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.6e-07 Score=95.68 Aligned_cols=111 Identities=23% Similarity=0.187 Sum_probs=78.3
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEee--CC-C------CCcHHHHHHHHHHhCCcceEEEeC
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LE-G------SPDLKYAKEVADYLGTVHHEFHFT 295 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~-~------~~D~~~A~~vA~~lg~~h~~v~~~ 295 (589)
...|.|.+|||+|||+.|+++.+.. ..+..+++- +. + ..|...|++||+.||++|+.+++.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QG----------yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~ 72 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQG----------YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFE 72 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcC----------CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchH
Confidence 4568999999999999999998764 567666642 21 1 148889999999999999999986
Q ss_pred hhhhH---HhHHHHHhhhccCccccccchHHHH-HHHHHHHhcCCeEEEeCCcc
Q 007799 296 VQDGI---DAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGS 345 (589)
Q Consensus 296 ~~~~~---~~l~~~i~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvLsG~Gg 345 (589)
.+-.- +.+-+--..-++|++...++-.-+| .+.+.+.+.|+.-+.||+-+
T Consensus 73 ~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYa 126 (356)
T COG0482 73 KEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYA 126 (356)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeE
Confidence 54321 2222212233677766555544444 45677788999999999865
No 69
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.57 E-value=2.2e-07 Score=98.12 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=76.0
Q ss_pred ccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC---C-CcHHHHHHHHHHhCCcceEEEeChhh
Q 007799 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---S-PDLKYAKEVADYLGTVHHEFHFTVQD 298 (589)
Q Consensus 223 ~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~---~-~D~~~A~~vA~~lg~~h~~v~~~~~~ 298 (589)
..+.++.+.+|||+||++++.++.+.. ..+.++++...+ + .|...|+++|+.+|++|+.+.++..
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G----------~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~- 71 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAG----------YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKV- 71 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcC----------CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHH-
Confidence 355679999999999999999998743 578888875422 2 3588899999999999998876532
Q ss_pred hHHhH-HHHH---hhhccCccccccchHHHH-HHHHHHHhcCCeEEEeCCcch
Q 007799 299 GIDAI-EEVI---YHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSD 346 (589)
Q Consensus 299 ~~~~l-~~~i---~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvLsG~GgD 346 (589)
+...+ ..++ ..-.++++...++....| .+.+.+.+.|++.+.||+-+.
T Consensus 72 f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 72 FRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 22211 1111 112334433333332222 456778889999999999984
No 70
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.54 E-value=1.4e-07 Score=99.01 Aligned_cols=114 Identities=19% Similarity=0.169 Sum_probs=69.3
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC-----------CcHHHHHHHHHHhCCcceEEEeC
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----------PDLKYAKEVADYLGTVHHEFHFT 295 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-----------~D~~~A~~vA~~lg~~h~~v~~~ 295 (589)
.|.|.+|||+|||+-|+++.+.. ..+..+++-+-+. .|+..|++||++||++|+.+.+.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G----------~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~ 71 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQG----------YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR 71 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-----------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH
T ss_pred eEEEEccCCHHHHHHHHHHHhhc----------ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH
Confidence 47899999999999999998754 6788888755332 25788999999999999999986
Q ss_pred hhhhHHhHHHHH---hhhccCccccccchHHHH-HHHHHHHh-cCCeEEEeCCcchhccc
Q 007799 296 VQDGIDAIEEVI---YHVETYDVTTIRASTPMF-LMSRKIKS-LGVKMVISGEGSDEIFG 350 (589)
Q Consensus 296 ~~~~~~~l~~~i---~~~e~~~~~~~~~~~~~~-~l~~~a~~-~g~~vvLsG~GgDElfg 350 (589)
.+-.-..+..++ ..-.||++...++..-.| .+.+.|.+ .|+..+-||+-|--...
T Consensus 72 ~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~ 131 (356)
T PF03054_consen 72 EEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD 131 (356)
T ss_dssp HHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee
Confidence 543222232222 233677765544432222 46677888 89999999999866554
No 71
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.52 E-value=9e-07 Score=86.36 Aligned_cols=144 Identities=23% Similarity=0.338 Sum_probs=87.1
Q ss_pred EEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHHhCCcceEEEeChhhhHH--hHH
Q 007799 229 GVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGID--AIE 304 (589)
Q Consensus 229 gv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~--~l~ 304 (589)
.++||||+||++++.++.+.. .++.++++.+.. ..|...|+++|+.+|++|+.+.++.-..+. .+.
T Consensus 2 vv~lSGG~DSs~~~~~~~~~g----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~ 71 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDEG----------YEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALT 71 (201)
T ss_pred EEEeccHHHHHHHHHHHHHcC----------CcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhccccccccc
Confidence 579999999999999887642 478889887643 357899999999999999988876421100 000
Q ss_pred H---HHh-hhccC---ccc--cccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHHHHHHHHHHhh
Q 007799 305 E---VIY-HVETY---DVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKAL 375 (589)
Q Consensus 305 ~---~i~-~~e~~---~~~--~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~~l 375 (589)
+ .+. ..... ... ..++.+.+-.+...|.+.|+..|++|.-.|++ +.|+. .+..|.+.+.. +
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~-~~~~d-----~~~~f~~~~~~----~ 141 (201)
T TIGR00364 72 DESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDF-SGYPD-----CRDEFVKAFNH----A 141 (201)
T ss_pred CCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcC-CCCCC-----CcHHHHHHHHH----H
Confidence 0 000 00000 000 01222222345677888999999999999885 55643 12334433222 1
Q ss_pred ccccccccccccccCCceeecCCCC
Q 007799 376 HQYDCLRANKSTSAWGLEARVPFLD 400 (589)
Q Consensus 376 ~~~dllr~dr~~~a~gvE~R~PfLD 400 (589)
.. .....++.+..||++
T Consensus 142 ~~--------~~~~~~~~i~~Pl~~ 158 (201)
T TIGR00364 142 LN--------LGMLTPVKIRAPLMD 158 (201)
T ss_pred HH--------hhcCCCeEEEECCcC
Confidence 11 112446888999976
No 72
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.52 E-value=4.8e-07 Score=95.96 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=75.6
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHHhCC-cceEEEeChhhhHHh
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA 302 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~lg~-~h~~v~~~~~~~~~~ 302 (589)
.++.+++|||+|||+++.++.+. +..+.++++.... ..|+..|+++|+.+|. +|+.+.+..+..-+.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~----------G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~v 72 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQER----------GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGF 72 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHc----------CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHH
Confidence 46899999999999999998763 2578999886644 4689999999999998 588887765443334
Q ss_pred HHHHH-----hhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCc
Q 007799 303 IEEVI-----YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 344 (589)
Q Consensus 303 l~~~i-----~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~G 344 (589)
+..++ +.-.+|.++.-|. +-.-.+.+.|++.|+..+.+|--
T Consensus 73 i~p~i~aNa~y~G~yPl~~~nR~-~~~~~l~e~A~~~G~~~IA~G~t 118 (400)
T PRK04527 73 VKPLVWAGEGYQGQYPLLVSDRY-LIVDAALKRAEELGTRIIAHGCT 118 (400)
T ss_pred HHHHHhcchhhcCCCCCccccHH-HHHHHHHHHHHHCCCCEEEecCc
Confidence 43333 2223444332111 11224567788899999999994
No 73
>PTZ00323 NAD+ synthase; Provisional
Probab=98.46 E-value=2.3e-06 Score=87.85 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhhcc--CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-C--CCcHHHHHHHHH
Q 007799 209 VLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-G--SPDLKYAKEVAD 283 (589)
Q Consensus 209 ~lr~~l~~aV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~--~~D~~~A~~vA~ 283 (589)
++-+...+.++.++.. ...+.+.||||+||+++++++.+.+.... .......++-.+ . ..+...|+.+|+
T Consensus 28 ~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~-----~~~~~~~~v~~P~~ss~~~~~~A~~la~ 102 (294)
T PTZ00323 28 AWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPN-----SPIQKNVGLCQPIHSSAWALNRGRENIQ 102 (294)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhcccc-----CCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3334444555555544 56788999999999999999998764311 011233333333 2 257889999999
Q ss_pred HhCCcceEEEeChhhhHHhHHHHHhhhccCccc-----c----ccchHHHHHHHHHHHhcCCeEEEeCC-cchhc-cccc
Q 007799 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVT-----T----IRASTPMFLMSRKIKSLGVKMVISGE-GSDEI-FGGY 352 (589)
Q Consensus 284 ~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~-----~----~~~~~~~~~l~~~a~~~g~~vvLsG~-GgDEl-fgGY 352 (589)
.+|++|+++.+++ ..+.+...+......+.. . +|+ ...|.+++.+.+.|...++.|- -.||+ .-||
T Consensus 103 ~lGi~~~~idi~~--l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~-~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~Gy 179 (294)
T PTZ00323 103 ACGATEVTVDQTE--IHTQLSSLVEKAVGIKGGAFARGQLRSYMRT-PVAFYVAQLLSQEGTPAVVMGTGNFDEDGYLGY 179 (294)
T ss_pred HhCCcEEEEECcH--HHHHHHHHHhhhhcccchhhHHHhHHHHHHh-HHHHHHHHHHhhcCCCeEEECCCCchhhhHhch
Confidence 9999999988764 233333322211000000 0 122 2347777777777888888887 67775 3477
Q ss_pred cc
Q 007799 353 LY 354 (589)
Q Consensus 353 ~~ 354 (589)
..
T Consensus 180 ~t 181 (294)
T PTZ00323 180 FC 181 (294)
T ss_pred Hh
Confidence 53
No 74
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.43 E-value=1.7e-06 Score=91.39 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=77.7
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhh---hHH
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQD---GID 301 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~---~~~ 301 (589)
..++.+.+|||+||++++.++++. +..+.++++... ..|...|+++|+++|++|+.+.++.+- .++
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~~----------G~eV~av~~~~~-~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~ 73 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQEQ----------GYEIVGVTMRVW-GDEPQDARELAARMGIEHYVADERVPFKDTIVK 73 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHc----------CCcEEEEEecCc-chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHH
Confidence 457899999999999999988763 256778877543 356678999999999999998876432 222
Q ss_pred hHHHHHhhhccCccccccchHHHH-HHHHHHHhcCCeEEEeCCcchh
Q 007799 302 AIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDE 347 (589)
Q Consensus 302 ~l~~~i~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvLsG~GgDE 347 (589)
.+-+....-.++++...++...-| .+.+.+.+.|+..+.||+-++-
T Consensus 74 ~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~ 120 (362)
T PRK14664 74 NFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRL 120 (362)
T ss_pred HhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 211212222345554444433323 4678888999999999999964
No 75
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.42 E-value=1.7e-06 Score=82.64 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=65.3
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCc----HHHHHHHHHHhCCcceEEEeChhhhH
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPD----LKYAKEVADYLGTVHHEFHFTVQDGI 300 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D----~~~A~~vA~~lg~~h~~v~~~~~~~~ 300 (589)
++.++||||+||++++.++.+.. .++.++++... ...| ...+.+.+..++.+|+...++..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g----------~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 69 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRG----------IEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFF- 69 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcC----------CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHH-
Confidence 36799999999999999998742 46777776543 2222 3444444566787776555544331
Q ss_pred HhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchh
Q 007799 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (589)
Q Consensus 301 ~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDE 347 (589)
...+......+++............+.+.|.+.|++++++|+.+|.
T Consensus 70 -~~~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 70 -VQKEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred -HHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCccc
Confidence 1112222223333322222222334567778899999999997765
No 76
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.42 E-value=1.2e-06 Score=93.20 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=74.8
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEE-EeChhhhHH-hHH
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEF-HFTVQDGID-AIE 304 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v-~~~~~~~~~-~l~ 304 (589)
++.+++|||+|||+++.++.+.. +..+.++++......|+..|+++|+.+|..++.+ .+. +++.+ .+.
T Consensus 4 kVvva~SGGlDSsvla~~l~e~l---------G~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~-~ef~~~~i~ 73 (399)
T PRK00509 4 KVVLAYSGGLDTSVIIKWLKETY---------GCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLR-EEFVRDYVF 73 (399)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhh---------CCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCH-HHHHHHhHH
Confidence 68999999999999999998753 2579999987765579999999999999865554 443 23322 222
Q ss_pred HHHhh-----hccCccccccchHHHHHHHHHHHhcCCeEEEeCCcc
Q 007799 305 EVIYH-----VETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (589)
Q Consensus 305 ~~i~~-----~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~Gg 345 (589)
..+.. ...|.++.++.....-.+.+.+++.|+.++.+|.-+
T Consensus 74 ~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~ 119 (399)
T PRK00509 74 PAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTG 119 (399)
T ss_pred HHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 23322 233444333322223345677888999999999876
No 77
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.41 E-value=1.3e-06 Score=92.22 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=74.0
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC-------C-----CCCcHHHHHHHHHHhCCcceEEEe
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL-------E-----GSPDLKYAKEVADYLGTVHHEFHF 294 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~-------~-----~~~D~~~A~~vA~~lg~~h~~v~~ 294 (589)
.+.+.+|||+||++++.++.+.. ..+.++++.. . ...|...|+++|+.+|++|+.+.+
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG----------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC----------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 47899999999999999998753 5678887731 1 113788999999999999998887
Q ss_pred Chhhh---HHhHHHHHhhhccCccccccchHH-HHHHHHHHHhc-CCeEEEeCCcc
Q 007799 295 TVQDG---IDAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKSL-GVKMVISGEGS 345 (589)
Q Consensus 295 ~~~~~---~~~l~~~i~~~e~~~~~~~~~~~~-~~~l~~~a~~~-g~~vvLsG~Gg 345 (589)
..+-. .+.+.+....-.++++...++... +..+.+.+.+. |+..+.||+-+
T Consensus 72 ~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 72 QKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 64322 222222111223455544443333 23556777775 99999999998
No 78
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.40 E-value=1.8e-06 Score=89.62 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=73.4
Q ss_pred HHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC--CCCCcHHHHHHH-HHHhCCcceEEEe
Q 007799 218 VIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEV-ADYLGTVHHEFHF 294 (589)
Q Consensus 218 V~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~D~~~A~~v-A~~lg~~h~~v~~ 294 (589)
+++.+.. .++.+.||||+||+++++++.+.. +.+++++++.. ....|...+++. ++++|++|+.+..
T Consensus 10 l~~~v~~-~kVvValSGGVDSsvla~ll~~~~---------G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~ 79 (311)
T TIGR00884 10 IREQVGD-AKVIIALSGGVDSSVAAVLAHRAI---------GDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDA 79 (311)
T ss_pred HHHHhCC-CcEEEEecCChHHHHHHHHHHHHh---------CCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeC
Confidence 3444433 679999999999999999998765 35788888753 334577777665 4589999998877
Q ss_pred ChhhhHHhHHHHHhhhccCc-cccccchHHHHHHHHHHHhcC-CeEEEeCCcchhc
Q 007799 295 TVQDGIDAIEEVIYHVETYD-VTTIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 348 (589)
Q Consensus 295 ~~~~~~~~l~~~i~~~e~~~-~~~~~~~~~~~~l~~~a~~~g-~~vvLsG~GgDEl 348 (589)
+.. +++.+.. ...+. ...+........+.+.+++.| ++.+++|...|.+
T Consensus 80 ~e~-fl~~l~~----v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~ 130 (311)
T TIGR00884 80 KER-FLSALKG----VTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDV 130 (311)
T ss_pred cHH-HHhhhcC----CCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhh
Confidence 532 2222221 11010 000111112233556677888 9999999888765
No 79
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.37 E-value=2.7e-06 Score=85.28 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC--CcHHHHHHHHHHh
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYL 285 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~D~~~A~~vA~~l 285 (589)
+.+.+.|.+-+++. ....+-+.||||+||+++|+++.+.+.. .++.++.+....+ .|...|+.+|+.+
T Consensus 3 ~~l~~~L~~~~~~~--g~~~vVvglSGGiDSav~A~La~~Alg~--------~~v~~v~mp~~~~~~~~~~~A~~la~~l 72 (242)
T PF02540_consen 3 EALVDFLRDYVKKS--GAKGVVVGLSGGIDSAVVAALAVKALGP--------DNVLAVIMPSGFSSEEDIEDAKELAEKL 72 (242)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEETSSHHHHHHHHHHHHHHGG--------GEEEEEEEESSTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEcCCCCCHHHHHHHHHHHhhh--------ccccccccccccCChHHHHHHHHHHHHh
Confidence 34455555555543 3356778899999999999999988732 3677888753333 3778999999999
Q ss_pred CCcceEEEeChhhhHHhHHHHHhhhc-cCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccc
Q 007799 286 GTVHHEFHFTVQDGIDAIEEVIYHVE-TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (589)
Q Consensus 286 g~~h~~v~~~~~~~~~~l~~~i~~~e-~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~ 354 (589)
|++|..+.+++ ..+.+.+.+.... ......+.+-+-|-.+...+...+. +++...--+|++-||..
T Consensus 73 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~-lVlgT~N~sE~~~Gy~T 139 (242)
T PF02540_consen 73 GIEYIVIDIDP--IFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNY-LVLGTGNKSELLLGYFT 139 (242)
T ss_dssp TSEEEEEESHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTE-EEBE--CHHHHHHTCSH
T ss_pred CCCeeccchHH--HHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccce-EEecCCcHHHhhcCccc
Confidence 99999988753 3343333222111 0111112222333334444444453 44444446778888854
No 80
>PRK13981 NAD synthetase; Provisional
Probab=98.34 E-value=3.4e-06 Score=94.64 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhhhcc--CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC--CcHHHHHHHH
Q 007799 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVA 282 (589)
Q Consensus 207 ~~~lr~~l~~aV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~D~~~A~~vA 282 (589)
.+++.+.+...++.++.. ...+.+.||||+||+++++++.+.+.+ .+++++++....+ .+...|+++|
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~--------~~v~~~~~p~~~~~~~~~~~a~~~a 331 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA--------ERVRAVMMPSRYTSEESLDDAAALA 331 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc--------CcEEEEECCCCCCCHHHHHHHHHHH
Confidence 455666666666666543 356889999999999999999887631 3688888765543 4788999999
Q ss_pred HHhCCcceEEEeChhhhHHhHHHHHhhh---ccCccc--cccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccccc
Q 007799 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV---ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (589)
Q Consensus 283 ~~lg~~h~~v~~~~~~~~~~l~~~i~~~---e~~~~~--~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~ 355 (589)
+.+|++|+++.+++ ..+.+...+... +..+.+ .+.+-+-|..+...+...|.-|+=||+- +|+.-||-..
T Consensus 332 ~~lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~-sE~~~Gy~t~ 406 (540)
T PRK13981 332 KNLGVRYDIIPIEP--AFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNK-SEMAVGYATL 406 (540)
T ss_pred HHcCCeEEEEECHH--HHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCcc-CHHHcCCeEe
Confidence 99999999888754 334333322211 111211 1222333445556666677666666654 5777788643
No 81
>PRK00919 GMP synthase subunit B; Validated
Probab=98.33 E-value=3.1e-06 Score=87.37 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHHhC
Q 007799 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLG 286 (589)
Q Consensus 209 ~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~lg 286 (589)
.|.+...+.++.++.. .++.+.+|||+||+++++++.+.. +.+++++++...- ..|.+.++++++.+
T Consensus 6 ~~~~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~l---------G~~v~aV~vD~G~~~~~E~e~a~~~~~~~- 74 (307)
T PRK00919 6 KFIEEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAI---------GDRLTPVFVDTGLMRKGETERIKETFSDM- 74 (307)
T ss_pred HHHHHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHh---------CCeEEEEEEECCCCCHHHHHHHHHHHhcc-
Confidence 3444444555666654 679999999999999999998764 3578888875432 35889999999987
Q ss_pred CcceEEEeChhhhHHhHHHHHhhhccCc-cccccchHHHHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 287 TVHHEFHFTVQDGIDAIEEVIYHVETYD-VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 287 ~~h~~v~~~~~~~~~~l~~~i~~~e~~~-~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
.+|+.+.++.. +++.+..+ ..+. ...+........+.+.|++.|++.+++|.-.|.+
T Consensus 75 i~~~vvd~~e~-fl~~L~~v----~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~ 132 (307)
T PRK00919 75 LNLRIVDAKDR-FLDALKGV----TDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDW 132 (307)
T ss_pred CCcEEEECCHH-HHHhccCC----CChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 88887766532 22332221 1111 0001111122345567778899999999887765
No 82
>PRK08349 hypothetical protein; Validated
Probab=98.27 E-value=3.9e-06 Score=81.72 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=65.9
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhC----CcceE-EEeChhhh-H
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG----TVHHE-FHFTVQDG-I 300 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg----~~h~~-v~~~~~~~-~ 300 (589)
++.+++|||+||++.+.++.+.. .++.++++.. +..+...++++|++++ .+|+. +.++..+. .
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g----------~~v~av~~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRG----------VEVYPVHFRQ-DEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcC----------CeEEEEEEeC-CHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 46789999999999999887642 5788888876 4456777777777774 77642 33332221 1
Q ss_pred HhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 301 ~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
..+..+...............+....+.+.|.+.|+..+++|+-.|..
T Consensus 71 ~~~~~~~~~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~ 118 (198)
T PRK08349 71 PVFEKLRELKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQV 118 (198)
T ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchH
Confidence 112211111111111111122223456677788999999999765543
No 83
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.24 E-value=6.4e-06 Score=87.71 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=68.7
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCc-HHHHHHHHHHhCCc-ceEEEeChhhhHH-hHH
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD-LKYAKEVADYLGTV-HHEFHFTVQDGID-AIE 304 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D-~~~A~~vA~~lg~~-h~~v~~~~~~~~~-~l~ 304 (589)
|.+++|||+|||+++.++.+.. +..+.++++......| .+.|+++|+.+|.+ |+.+.+.. ++.+ .+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~---------~~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~-ef~~~~i~ 70 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG---------GYEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLRE-EFVEDYIF 70 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC---------CCeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHH-HHHHHhhH
Confidence 4689999999999999998754 2378999987654433 48999999999997 55555432 2322 333
Q ss_pred HHHhhhcc----Ccc-ccccchHHHHHHHHHHHhcCCeEEEeCCcc
Q 007799 305 EVIYHVET----YDV-TTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (589)
Q Consensus 305 ~~i~~~e~----~~~-~~~~~~~~~~~l~~~a~~~g~~vvLsG~Gg 345 (589)
..+..... |.. +.++-....-.+.+.|++.|++++.+|.-+
T Consensus 71 ~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 71 PAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 33332221 211 111111222235677888999999877654
No 84
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.22 E-value=7e-06 Score=87.58 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=70.9
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC-CcHHHHHHHHHHhCCcceEEEeChhhhH-HhH
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGTVHHEFHFTVQDGI-DAI 303 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-~D~~~A~~vA~~lg~~h~~v~~~~~~~~-~~l 303 (589)
.++.+++|||+|||+++.++.+.. +..+.++++..... .|+..|+++|+.+|.+|+.+.--.+++. +.+
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~---------G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i 76 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY---------GCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYI 76 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh---------CCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhc
Confidence 478999999999999999987653 25789999876544 5899999999999998765542233333 222
Q ss_pred HHHHhhhccCcc-----ccccchHHHHHHHHHHHhcCCeEEEeCCcc
Q 007799 304 EEVIYHVETYDV-----TTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (589)
Q Consensus 304 ~~~i~~~e~~~~-----~~~~~~~~~~~l~~~a~~~g~~vvLsG~Gg 345 (589)
...+.....+.. +.+.-....-.+.+.|++.|++++.+|.-|
T Consensus 77 ~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tg 123 (404)
T PLN00200 77 FPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATG 123 (404)
T ss_pred CHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcC
Confidence 222222211111 111001112245677888999999877654
No 85
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.21 E-value=1.1e-05 Score=81.50 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhhcc--CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHH
Q 007799 209 VLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADY 284 (589)
Q Consensus 209 ~lr~~l~~aV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~ 284 (589)
...+.+.+.++.++.. ...+.+-||||+||+++++++.+.....+.... ...+..+.+.++. +.+...|+.+|+.
T Consensus 20 ~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~-~~~~~~~~l~mP~~~~~~~~da~~la~~ 98 (268)
T PRK00768 20 EEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETG-DDDYQFIAVRLPYGVQADEDDAQDALAF 98 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhccccc-CcceeEEEEECCCCCcCCHHHHHHHHHh
Confidence 3444444555555533 344667899999999999998887643210000 0123455554542 3568999999999
Q ss_pred hCC-cceEEEeChhhhHHhHHHHHhhhc--cCc--cccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccc
Q 007799 285 LGT-VHHEFHFTVQDGIDAIEEVIYHVE--TYD--VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (589)
Q Consensus 285 lg~-~h~~v~~~~~~~~~~l~~~i~~~e--~~~--~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~ 354 (589)
+|+ .|.++.++ ...+.+.+.+...+ .-+ ...+.+-+-|-.++..|...|.-|+=||. -+|++-||..
T Consensus 99 lgi~~~~~i~I~--~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N-~sE~~~Gy~T 170 (268)
T PRK00768 99 IQPDRVLTVNIK--PAVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDH-AAEAVTGFFT 170 (268)
T ss_pred cCCCeeEEEECH--HHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCc-ccHHHhCcee
Confidence 999 67777665 34444433332200 001 01122233344455556666765555665 4577788854
No 86
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=98.20 E-value=8.4e-06 Score=75.14 Aligned_cols=118 Identities=20% Similarity=0.350 Sum_probs=79.3
Q ss_pred CCCeeecCCcEEEEEEEEECChHHHHHHhcCC--CCCCCChHHHHHHHHHHHhHHHHhhcccceEEEEEECCCCEEEEEE
Q 007799 60 DQPLYNEDKKIVVTVNGEIYNHEALRERLTNH--KFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVAR 137 (589)
Q Consensus 60 ~QP~~~~~~~~~l~~NGeIyN~~eL~~~l~~~--~~~t~sD~Evil~ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aR 137 (589)
-|-+..+.+ ..-.-|.|||..-|+.-...+ .-..-+|.|+++.+|.+.|..++.--+|+|+|.|=|+ ++++.+..
T Consensus 41 ~qk~~~~~~--tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG~~aLsLAEGdfcffiE~k-ng~L~l~T 117 (201)
T PF09147_consen 41 FQKMRFERG--TAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLGNSALSLAEGDFCFFIEDK-NGELTLIT 117 (201)
T ss_dssp EEEEEETTE--EEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH-GGGGGG--SSEEEEEEET-TSEEEEEE
T ss_pred eeEEEecCc--cEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhhhhhhhhhcCceEEEEecC-CCcEEEEe
Confidence 344555444 444569999998887765211 1235689999999999999999999999999999876 58999999
Q ss_pred cCCCCceeEEEEecCceEEEEcCccccccc--------------------------cccceeeCCccEEEe
Q 007799 138 DAIGITSLYIGWGLDGSIWISSELKGLNDD--------------------------CEHFEAFPPGHLYSS 182 (589)
Q Consensus 138 D~~G~~PLyy~~~~~g~~~faSe~k~L~~~--------------------------~~~I~~lpPG~~~~~ 182 (589)
|+-|.-|.|.-+. +..|+...+|-+-.. .+++.++.||++-.+
T Consensus 118 ds~G~~pv~lV~~--~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na~RlkPGsin~l 186 (201)
T PF09147_consen 118 DSRGFNPVYLVQS--KFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNAQRLKPGSINVL 186 (201)
T ss_dssp -SSSSS-EEEEES--SSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTEEEE-SSEEEEE
T ss_pred cCCCCceEEEEec--CceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccceecCCCceEEE
Confidence 9999999999764 467888877754210 257889999998544
No 87
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.19 E-value=9.7e-06 Score=86.34 Aligned_cols=110 Identities=21% Similarity=0.216 Sum_probs=72.2
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCC-cceeEEeeCCC-CCcHHHHHHHHHHhCCcceEEEeChhhhH-Hh
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGT-QLHSFCVGLEG-SPDLKYAKEVADYLGTVHHEFHFTVQDGI-DA 302 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~-~l~tfsig~~~-~~D~~~A~~vA~~lg~~h~~v~~~~~~~~-~~ 302 (589)
..+.+.+|||+||++++.++.+.. +. .+.++++.... ..|...++++|+.+|++|+.+.+.. ++. +.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~---------g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~e-ef~~~~ 72 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKY---------GYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAKE-EFAKDY 72 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhc---------CCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCHH-HHHHHH
Confidence 358999999999999999987653 23 68888886543 3588999999999999988876653 232 33
Q ss_pred HHHHHhhh---ccCcccc-ccchHHHHHHHHHHHhcCCeEEEeCCcc
Q 007799 303 IEEVIYHV---ETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGS 345 (589)
Q Consensus 303 l~~~i~~~---e~~~~~~-~~~~~~~~~l~~~a~~~g~~vvLsG~Gg 345 (589)
+...+... +.|..++ .......-.+.+.+++.|+++|.+|.-+
T Consensus 73 i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~ 119 (394)
T PRK13820 73 IFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTG 119 (394)
T ss_pred HHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 33333321 1121111 1111111245667788999999999855
No 88
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.17 E-value=9.1e-06 Score=78.30 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=71.4
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC--CCC--CcHHHHHHHHHHhCCcceEEEeChhhhHHh
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~--~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~ 302 (589)
++.+.+|||.||++++.++.+..+.. +.++.++++.. ... .+.+.++++|+.+|++++.+.++..+....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~------~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL------KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKG 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccc
Confidence 37899999999999999998754321 23577777643 322 367899999999999999888764331100
Q ss_pred HHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhcc
Q 007799 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 303 l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
.....+. .....-+..+.+.+++.|+.++++|+-+|++-
T Consensus 75 ---~~~~~~~-----~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~ 113 (189)
T TIGR02432 75 ---KKKNLEE-----AAREARYDFFEEIAKKHGADYILTAHHADDQA 113 (189)
T ss_pred ---cCCCHHH-----HHHHHHHHHHHHHHHHcCCCEEEEcCccHHHH
Confidence 0000000 00112223456677888999999999888753
No 89
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=98.16 E-value=2.4e-05 Score=79.47 Aligned_cols=132 Identities=20% Similarity=0.151 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhh--hccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC--CCCCcHHHHHHHHH
Q 007799 208 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVAD 283 (589)
Q Consensus 208 ~~lr~~l~~aV~~r--l~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~D~~~A~~vA~ 283 (589)
+.+.+.+.+++++. +....++.+.+|||.||++++.++.+...+.. ++..+.++++.. .+ .+...++++|+
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~----~~~~l~av~vd~g~~~-~~~~~~~~~~~ 84 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAP----INFELVAVNLDQKQPG-FPEHVLPEYLE 84 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCC----CCeEEEEEEecCCCCC-CCHHHHHHHHH
Confidence 45666677777763 23456799999999999999999877542210 113567777643 32 24457899999
Q ss_pred HhCCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhcc
Q 007799 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 284 ~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
.+|++|+.+.++..... .+.+. +...........-..++.+.+.+.|+.++++|+-+|...
T Consensus 85 ~lgI~~~v~~~~~~~~~---~~~~~--~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 85 SLGVPYHIEEQDTYSIV---KEKIP--EGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred HhCCCEEEEEecchhhh---hhhhc--cCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 99999998875432211 11010 000110111112234566778889999999999999854
No 90
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.15 E-value=1.3e-05 Score=88.99 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHH-HHHH
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VADY 284 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~-vA~~ 284 (589)
+.+.+...+.+++.+. +.++.+.+|||+||+++++++.+.. +.++.++++... ..+|...+++ +|+.
T Consensus 199 ~~~~~~~~~~l~~~v~-~~~vlva~SGGvDS~vll~ll~~~l---------g~~v~av~vd~g~~~~~e~~~~~~~~a~~ 268 (511)
T PRK00074 199 ENFIEEAIEEIREQVG-DKKVILGLSGGVDSSVAAVLLHKAI---------GDQLTCVFVDHGLLRKNEAEQVMEMFREH 268 (511)
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEEeCCCccHHHHHHHHHHHh---------CCceEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3444444455666655 4689999999999999999998865 356888887532 2357777775 6799
Q ss_pred hCCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhc-CCeEEEeCCcchhc
Q 007799 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 348 (589)
Q Consensus 285 lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~-g~~vvLsG~GgDEl 348 (589)
+|++|+.+.++.. +++.+..+ ..+.....++.......+.+.+++. |++.+++|+-.|.+
T Consensus 269 lgi~~~vvd~~~~-f~~~l~g~---~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~ 329 (511)
T PRK00074 269 FGLNLIHVDASDR-FLSALAGV---TDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDV 329 (511)
T ss_pred cCCcEEEEccHHH-HHHhccCC---CCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchh
Confidence 9999998876532 22222111 0000000111122233456777788 99999999977665
No 91
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.14 E-value=1.1e-05 Score=69.92 Aligned_cols=76 Identities=29% Similarity=0.296 Sum_probs=58.5
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHHHH
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVI 307 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~i 307 (589)
+.+.+|||.||++++.++.+.. .++..+++.....+|...++++++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----------YQVIAVTVDHGISPRLEDAKEIAKE----------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----------CCEEEEEEcCCCcccHHHHHHHHHH-----------------------
Confidence 4689999999999999998753 3677888765544577777777777
Q ss_pred hhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccc
Q 007799 308 YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (589)
Q Consensus 308 ~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfg 350 (589)
.....+.+.+++.|++.+++|+..|.+..
T Consensus 48 --------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~ 76 (103)
T cd01986 48 --------------AREEAAKRIAKEKGAETIATGTRRDDVAN 76 (103)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEcCCcchHHH
Confidence 12334567778899999999999998764
No 92
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=1.8e-05 Score=81.84 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--eCCC--CCcHHHHHHHHHH
Q 007799 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEG--SPDLKYAKEVADY 284 (589)
Q Consensus 209 ~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~--~~D~~~A~~vA~~ 284 (589)
.+...+.++++...+-+..+.|.+|||.||++.+.++.+.... ..+.++++ ++.+ ..+...++.+++.
T Consensus 5 ~~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~--------~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~ 76 (298)
T COG0037 5 KLERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRR--------IEVEAVHVDHGLRGYSDQEAELVEKLCEK 76 (298)
T ss_pred HHHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccC--------ceEEEEEecCCCCCccchHHHHHHHHHHH
Confidence 3444444444443222568999999999999999999886521 24556665 4443 3577889999999
Q ss_pred hCCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhcc
Q 007799 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 285 lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
+|.+++...++........+ ..............++.+.+.+.|+++++||+-+|...
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~-------~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~ 134 (298)
T COG0037 77 LGIPLIVERVTDDLGRETLD-------GKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA 134 (298)
T ss_pred hCCceEEEEEEeeccccccC-------CCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH
Confidence 99988877776543221111 00111111123345678888999999999999999865
No 93
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.08 E-value=1.2e-05 Score=82.82 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=70.3
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHHHHHHhCC-cceEEEeChhhhHHhHH
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDAIE 304 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~vA~~lg~-~h~~v~~~~~~~~~~l~ 304 (589)
+.+.+|||+||+++++++.+.. +.++.++++... ...|...++++++.+|. +|+.+.++. .+++.+.
T Consensus 2 VlVa~SGGVDSsvla~ll~~~l---------G~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e-~fl~~l~ 71 (295)
T cd01997 2 VILALSGGVDSTVAAVLLHKAI---------GDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASE-RFLSALK 71 (295)
T ss_pred EEEEEcCChHHHHHHHHHHHHh---------CCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcH-HHHHHhc
Confidence 6789999999999999998864 356788887543 24588899999998886 888876643 2222211
Q ss_pred HHHhhhccCccccccchHHHHHHHHHHHhcC-CeEEEeCCcchhc
Q 007799 305 EVIYHVETYDVTTIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 348 (589)
Q Consensus 305 ~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g-~~vvLsG~GgDEl 348 (589)
.+. ++.....+........+.+.|++.| ++.+++|.-+|.+
T Consensus 72 ~v~---npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~ 113 (295)
T cd01997 72 GVT---DPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDV 113 (295)
T ss_pred CCC---CHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccch
Confidence 110 0000000001112224567778889 9999999998876
No 94
>PLN02347 GMP synthetase
Probab=98.08 E-value=1.6e-05 Score=88.22 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=76.2
Q ss_pred HHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEee--CCCCCcHHHH-HHHHHHhCCcceE
Q 007799 215 ENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYA-KEVADYLGTVHHE 291 (589)
Q Consensus 215 ~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~D~~~A-~~vA~~lg~~h~~ 291 (589)
.+.++..+..+.++.+.||||+||+++|+++.+.+ +.++.++++. +....|...+ +.+|+.+|++|+.
T Consensus 219 i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~al---------G~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~v 289 (536)
T PLN02347 219 IELIKATVGPDEHVICALSGGVDSTVAATLVHKAI---------GDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTC 289 (536)
T ss_pred HHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHh---------CCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEE
Confidence 34455566667889999999999999999999865 3578888875 3334566666 7899999999999
Q ss_pred EEeChhhhHHhHHHHHhhhccCccccccchH--HHH-HHH-HHHHhcC--CeEEEeCCcchhcc
Q 007799 292 FHFTVQDGIDAIEEVIYHVETYDVTTIRAST--PMF-LMS-RKIKSLG--VKMVISGEGSDEIF 349 (589)
Q Consensus 292 v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~--~~~-~l~-~~a~~~g--~~vvLsG~GgDElf 349 (589)
+.+++ .+++.++.+. ++.+-.-+.-.+ -.| .+. +.+.+.| ++.++.|--.|.+.
T Consensus 290 vd~~e-~fl~~l~~~~---~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~ 349 (536)
T PLN02347 290 VDASE-RFLSKLKGVT---DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVI 349 (536)
T ss_pred EeCcH-HHHhhCCCCC---ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccc
Confidence 88763 3444433332 111111111111 111 122 2222333 48888888777765
No 95
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.04 E-value=1.8e-05 Score=85.25 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=70.8
Q ss_pred ccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEee---CCCCCcHHHHHHHHHHhC-----CcceEEEe
Q 007799 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG---LEGSPDLKYAKEVADYLG-----TVHHEFHF 294 (589)
Q Consensus 223 ~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig---~~~~~D~~~A~~vA~~lg-----~~h~~v~~ 294 (589)
.++.++.++||||+||++++.++.+.. .++.+.++. +....+...++++|+.++ .+|+.+.+
T Consensus 174 g~~gkvvvllSGGiDS~vaa~l~~k~G----------~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~ 243 (394)
T PRK01565 174 GTSGKALLLLSGGIDSPVAGYLAMKRG----------VEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPF 243 (394)
T ss_pred CCCCCEEEEECCChhHHHHHHHHHHCC----------CEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 356778999999999999999987642 466666663 222346788888888885 88888887
Q ss_pred ChhhhHHhHHHHHhhhccCccccccchHHHH-HHHHHHHhcCCeEEEeCCcchhcc
Q 007799 295 TVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 295 ~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
++.. ..+..... +.+ ..+..--.+| .+.+.|.+.|+.++.||+-.|.+.
T Consensus 244 ~~~~--~~i~~~~~--~~~--~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~ 293 (394)
T PRK01565 244 TEIQ--EEIKKKVP--ESY--LMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVA 293 (394)
T ss_pred HHHH--HHHhhcCC--Cce--EEEeHHHHHHHHHHHHHHHcCCCEEEEcccccccc
Confidence 6421 22211100 111 1111111233 455667789999999999877653
No 96
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.01 E-value=1.9e-05 Score=75.61 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=68.3
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CC--CcHHHHHHHHHHhCCcceEEEeChhhhHHh
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~--~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~ 302 (589)
.+.+.+|||.||++++.++.+..... +.++..+++... .. .+...++++|+.+|++++.+......
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 70 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAP---- 70 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecccc----
Confidence 36899999999999999998765321 236888887543 22 46889999999999988876211000
Q ss_pred HHHHHhhhccCccccccchHH-HHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 303 IEEVIYHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 303 l~~~i~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
........ .+... ...+.+.+.+.|+..+++|+-+|++
T Consensus 71 -------~~~~~~~~-~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 71 -------KPGGNLEA-AAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred -------CCCCCHHH-HHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 00000000 01112 2345677788999999999998875
No 97
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=97.97 E-value=3.6e-05 Score=82.28 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=68.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC-CCcHHHHHHHHHHhCC-cceEEEeChhhhHHh-H
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-I 303 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~-~~D~~~A~~vA~~lg~-~h~~v~~~~~~~~~~-l 303 (589)
++.+++|||+||++++.++.+. +..+.++++.... ..|...++++|+.+|. +|+.+.+.. ++.+. .
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----------g~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~-ef~~~~~ 69 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----------GYEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDARE-EFVKDYG 69 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----------CCEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHH-HHHHhhc
Confidence 3789999999999999988764 2578888886543 3588999999999997 687776643 33222 1
Q ss_pred HHHHhhhccCcc-ccccchHHHH----HHHHHHHhcCCeEEEeCCcc
Q 007799 304 EEVIYHVETYDV-TTIRASTPMF----LMSRKIKSLGVKMVISGEGS 345 (589)
Q Consensus 304 ~~~i~~~e~~~~-~~~~~~~~~~----~l~~~a~~~g~~vvLsG~Gg 345 (589)
-..+.....|.. -.+..++.-. .+.+.+++.|++++..|.-+
T Consensus 70 ~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~ 116 (394)
T TIGR00032 70 FAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTG 116 (394)
T ss_pred hhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccC
Confidence 111211111110 0011111112 35566788999999999743
No 98
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.93 E-value=5.1e-05 Score=80.79 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=70.1
Q ss_pred ccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCc-------ceEEEeC
Q 007799 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV-------HHEFHFT 295 (589)
Q Consensus 223 ~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~-------h~~v~~~ 295 (589)
.+..++.++||||+||++.+.++.+.. ..+.++++.. +..+...++++|+.|+.. .+.+.++
T Consensus 178 Gs~gkvlvllSGGiDSpVAa~ll~krG----------~~V~~v~f~~-g~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~ 246 (381)
T PRK08384 178 GTQGKVVALLSGGIDSPVAAFLMMKRG----------VEVIPVHIYM-GEKTLEKVRKIWNQLKKYHYGGKAELIVVKPQ 246 (381)
T ss_pred CCCCcEEEEEeCChHHHHHHHHHHHcC----------CeEEEEEEEe-CHHHHHHHHHHHHHhcccccCCcceEEEEChH
Confidence 356789999999999999999998753 5677777643 235678899999999843 3333332
Q ss_pred hh-hhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 296 VQ-DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 296 ~~-~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
.. ++.+.+.+.. .+.+ .+.++...-+..+.+.|.+.|+..++||+-.|.+
T Consensus 247 ~~~~v~~~i~~~~--~~~~-~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqv 297 (381)
T PRK08384 247 ERERIIQKLKELK--KENY-TCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQV 297 (381)
T ss_pred HHHHHHHHHHHhc--cCCC-chHHHHHHHHHHHHHHHHHcCCCEEEEcccchhH
Confidence 11 2223222211 1111 1122222223345666778999999999987665
No 99
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.91 E-value=8e-05 Score=85.66 Aligned_cols=144 Identities=17% Similarity=0.166 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhhhcc--CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCC--cHHHHHHHH
Q 007799 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVA 282 (589)
Q Consensus 207 ~~~lr~~l~~aV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~--D~~~A~~vA 282 (589)
.+++.+.+...++++++. ...+.+.||||+||+++++++.+....-.. -..++.++++.-.++. ....|+++|
T Consensus 341 ~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~---~~~~v~~v~mp~~~ss~~s~~~a~~la 417 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGL---PRKNILAYTMPGFATTDRTKNNAVALM 417 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCC---CcceEEEEECCCCCCCHHHHHHHHHHH
Confidence 355666666677776643 456888999999999999999887431100 0146777776323333 568899999
Q ss_pred HHhCCcceEEEeChhhhHHhHHHHHhhh-----ccCccc--cccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccccc
Q 007799 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-----ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (589)
Q Consensus 283 ~~lg~~h~~v~~~~~~~~~~l~~~i~~~-----e~~~~~--~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~ 355 (589)
+.+|++|+++.+.+ ..+...+.+.+. +..+.+ .+.+-+-+..+...+.+.|.-|+-||+ -.|++-||..+
T Consensus 418 ~~LGi~~~~i~I~~--~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn-~sE~~~Gy~T~ 494 (679)
T PRK02628 418 KALGVTAREIDIRP--AALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGD-LSELALGWCTY 494 (679)
T ss_pred HHhCCeEEEEEcHH--HHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCCc-hhhHHhCceec
Confidence 99999999988743 333322222111 001111 123345566777888889998999995 45777788654
Q ss_pred c
Q 007799 356 H 356 (589)
Q Consensus 356 ~ 356 (589)
.
T Consensus 495 ~ 495 (679)
T PRK02628 495 G 495 (679)
T ss_pred C
Confidence 4
No 100
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=97.91 E-value=3.9e-05 Score=81.96 Aligned_cols=111 Identities=19% Similarity=0.216 Sum_probs=68.9
Q ss_pred cCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC---CCcHHHHHHHHHHhCC---cceEEEeChh
Q 007799 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLGT---VHHEFHFTVQ 297 (589)
Q Consensus 224 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~---~~D~~~A~~vA~~lg~---~h~~v~~~~~ 297 (589)
++.++.++||||+||++.+.++.+.. .++.++++.... ..+...++.+++.++. +.+.+.++..
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG----------~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~ 240 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRG----------CRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFT 240 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcC----------CeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCH
Confidence 55678999999999999999997643 567777765432 2467788999998843 2233334333
Q ss_pred hhHHhHHHHHhhhccCccccccchHHHH-HHHHHHHhcCCeEEEeCCcchhc
Q 007799 298 DGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 298 ~~~~~l~~~i~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
+.... +....+... ..+..--.|| .+.+.|.+.|+..++||+-.|.+
T Consensus 241 ~~~~~---i~~~~~~~~-~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 241 DVQEE---IIHIIPEGY-TCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQV 288 (371)
T ss_pred HHHHH---HHhcCCCCc-eeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhh
Confidence 33322 221111111 1111111233 34566778999999999998875
No 101
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=4.3e-05 Score=69.67 Aligned_cols=62 Identities=32% Similarity=0.334 Sum_probs=50.6
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhh
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQD 298 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~ 298 (589)
.+++++|||-|||+-|.++.+.. ..++..|+.|---+..++|++.|+.+|.+|..+.++.+-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klg----------yev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLG----------YEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhC----------CCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHH
Confidence 37899999999999999998864 456666665544678999999999999999999886543
No 102
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=6.5e-05 Score=75.47 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=76.8
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEe----eCC-------CCCcHHHHHHHHHHhCCcceEEEe
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV----GLE-------GSPDLKYAKEVADYLGTVHHEFHF 294 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsi----g~~-------~~~D~~~A~~vA~~lg~~h~~v~~ 294 (589)
..|.|.+|||+|||+-|.++++.. .++..+-+ +++ ...|.+.|+.|+++|+++.|.+++
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g----------~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARG----------YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcC----------CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 458899999999999999888754 45554443 111 125899999999999999999999
Q ss_pred ChhhhHHhHHHHHhhh---ccCccccccchHHHHH-HHHHH-HhcCCeEEEeCCcchhcccccc
Q 007799 295 TVQDGIDAIEEVIYHV---ETYDVTTIRASTPMFL-MSRKI-KSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 295 ~~~~~~~~l~~~i~~~---e~~~~~~~~~~~~~~~-l~~~a-~~~g~~vvLsG~GgDElfgGY~ 353 (589)
..+...+.+..++... -||++...++-.-.|- +.+.+ ...|..-+.||+-|-.+++-+.
T Consensus 76 ~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~ 139 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED 139 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCccc
Confidence 8776666555554322 2333322222111121 22223 2357889999999877776553
No 103
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=97.86 E-value=6.1e-05 Score=71.26 Aligned_cols=87 Identities=23% Similarity=0.290 Sum_probs=61.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHH
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~ 304 (589)
++.+++|||+||++++.++.+.. .++.++++.+. ...|...++++++.+| ++..+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~---------- 59 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPA---------- 59 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeC----------
Confidence 36789999999999999887642 46788888653 2347789999999999 3322211
Q ss_pred HHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 305 EVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 305 ~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
+.....-++.+.+.+.|+..+++|+-.|+.
T Consensus 60 --------------~~~~~~~~l~~~a~~~g~~~i~~G~~~~d~ 89 (169)
T cd01995 60 --------------RNLIFLSIAAAYAEALGAEAIIIGVNAEDY 89 (169)
T ss_pred --------------cCHHHHHHHHHHHHHCCCCEEEEeeccCcc
Confidence 000011134566678899999999999885
No 104
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.82 E-value=0.0001 Score=72.90 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=58.2
Q ss_pred EeecCCcchHHHHHHHHHHhcccccccccCCcce-eEEeeCC-------CCCcHHHHHHHHHHhCCcceEEEeChhhhHH
Q 007799 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLH-SFCVGLE-------GSPDLKYAKEVADYLGTVHHEFHFTVQDGID 301 (589)
Q Consensus 230 v~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~-tfsig~~-------~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~ 301 (589)
+++|||+||++.+..+.+.. ..+. .+++..+ ...+...++++|+.+|++|+.+.++... .+
T Consensus 2 vl~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~-~~ 70 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG----------HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEK-EK 70 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC----------CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCC-hH
Confidence 68999999999998887743 3443 3343222 1358899999999999999988875210 00
Q ss_pred hHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcch
Q 007799 302 AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSD 346 (589)
Q Consensus 302 ~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgD 346 (589)
..+ .++...+.+++.|++.+++|.=.+
T Consensus 71 ~~~------------------~l~~~l~~~~~~g~~~vv~G~i~s 97 (218)
T TIGR03679 71 EVE------------------DLKGALKELKREGVEGIVTGAIAS 97 (218)
T ss_pred HHH------------------HHHHHHHHHHHcCCCEEEECCccc
Confidence 000 023333445555999999998765
No 105
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.78 E-value=0.00016 Score=70.17 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=60.3
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--------CCcHHHHHHHHHHhCCcceEEEeChhhh
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--------SPDLKYAKEVADYLGTVHHEFHFTVQDG 299 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--------~~D~~~A~~vA~~lg~~h~~v~~~~~~~ 299 (589)
+.+++|||.||++.+.++.+.. ..+.++++-.+. ..+...++++|+.+|++|+.+.++...
T Consensus 2 v~v~~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~- 70 (194)
T cd01994 2 VVALISGGKDSCYALYRALEEG----------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEE- 70 (194)
T ss_pred EEEEecCCHHHHHHHHHHHHcC----------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCc-
Confidence 6789999999999999888743 345544433221 137889999999999999988764311
Q ss_pred HHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchh
Q 007799 300 IDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (589)
Q Consensus 300 ~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDE 347 (589)
-+.. -.++...+.+++.|++++++|.-.++
T Consensus 71 e~~~------------------~~l~~~l~~~~~~g~~~vv~G~i~sd 100 (194)
T cd01994 71 EDEV------------------EDLKELLRKLKEEGVDAVVFGAILSE 100 (194)
T ss_pred hHHH------------------HHHHHHHHHHHHcCCCEEEECccccH
Confidence 1111 11222233334448999999987765
No 106
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.76 E-value=0.00011 Score=70.38 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=62.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEee--CCCC--CcHHHHHHHHHHhCCcceEEEeChhhhHHh
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~--~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~ 302 (589)
.+.+.+|||.||++++.++.+..... +.++..+++. +... .|....+++++.+|++++...++....
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~--- 71 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDRK--- 71 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHCC---
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeeec---
Confidence 37899999999999999998875432 2467777764 3322 356788999999999998887754100
Q ss_pred HHHHHhhhccCccccccchHHHH-HHHHHHHhcCCeEEEeCCcchhc
Q 007799 303 IEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 303 l~~~i~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
....+. ..+...-| ++.+.+++.|+.++++|+-.|.+
T Consensus 72 ------~~~~~e---~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~ 109 (182)
T PF01171_consen 72 ------KGSNIE---ECARELRYQFLREIAKEEGCNKIALGHHLDDQ 109 (182)
T ss_dssp ------TTSTCH---HHHHHHHHHHHHHHHHTTT-CEEE---BHHHH
T ss_pred ------ccCCHH---HHHHHHHHHHHHHhhhcccccceeecCcCCcc
Confidence 000000 00111222 56678889999999999999875
No 107
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.73 E-value=0.00013 Score=80.65 Aligned_cols=111 Identities=19% Similarity=0.273 Sum_probs=68.4
Q ss_pred cCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC----CcHHHHHHHHHHhCCcce--EEEeChh
Q 007799 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS----PDLKYAKEVADYLGTVHH--EFHFTVQ 297 (589)
Q Consensus 224 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~----~D~~~A~~vA~~lg~~h~--~v~~~~~ 297 (589)
+..++.++||||+||++.++++.+.. ..++++++.+... .+.+.|+.+++.++..|. .+.++..
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~krG----------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~ 245 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMRRG----------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFE 245 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHHcC----------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecH
Confidence 45678899999999999999887653 5677777654322 267889999988886554 3333333
Q ss_pred hhHHhHHHHHhhh-ccCccccccchHHHH-HHHHHHHhcCCeEEEeCCcchhcc
Q 007799 298 DGIDAIEEVIYHV-ETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 298 ~~~~~l~~~i~~~-e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
+... ++.... +.+... +.- ..|+ ...+.|.+.|++.++||+-.|++-
T Consensus 246 ~~~~---~i~~~~~~~~~~~-v~r-R~ml~iA~~~A~~~ga~~IvtG~~l~dva 294 (482)
T PRK01269 246 PVVG---EILEKVDDGQMGV-VLK-RMMLRAASKVAERYGIQALVTGEALGQVS 294 (482)
T ss_pred HHHH---HHHhcCCCceecH-HHH-HHHHHHHHHHHHHcCCCEEEECcChHhhh
Confidence 3222 222111 111100 111 1122 235667789999999999988763
No 108
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=97.71 E-value=0.00012 Score=68.46 Aligned_cols=115 Identities=18% Similarity=0.143 Sum_probs=68.3
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC--CCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHH
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~ 304 (589)
++.+.+|||.||++++.++.+...+. .++..+++.. +-.....+++++++.+|.+++.+......... ..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-------~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 72 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-------KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEG-LA 72 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHH-HH
Confidence 46899999999999999998865210 1566666543 22235678999999999998887665432111 00
Q ss_pred HHHhhhccCccccccchH---HHHHHHHHHHhcCCeEEEeCCcchhccc
Q 007799 305 EVIYHVETYDVTTIRAST---PMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (589)
Q Consensus 305 ~~i~~~e~~~~~~~~~~~---~~~~l~~~a~~~g~~vvLsG~GgDElfg 350 (589)
..... ..+.....+... -.-.+.+.+++.+..++++|.-+||...
T Consensus 73 ~~~~~-~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~ 120 (173)
T cd01713 73 LGLKG-FPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120 (173)
T ss_pred Hhhhc-cCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchh
Confidence 11111 111100111000 0112445566678899999999999753
No 109
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=97.63 E-value=0.00075 Score=68.26 Aligned_cols=140 Identities=21% Similarity=0.236 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhhhcc--CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHHHHH
Q 007799 208 LVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVAD 283 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~vA~ 283 (589)
++..+.+..-++.++.. ...+.+-||||+||+++++++.+.+.+ .. ....+.++..... ...+..-|+.+++
T Consensus 6 ~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~-~~---~~~~~~av~mP~~~~~~~~~~da~~~~~ 81 (268)
T COG0171 6 EEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGK-GD---SKENVLAVRLPYGYTVQADEEDAQDLAE 81 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhcc-cc---chhheeeEECCCCCccccCHHHHHHHHH
Confidence 44444555555555542 234567799999999999999998743 00 0023566665544 3458889999999
Q ss_pred HhCCcceEEEeChhhhHHhH-HHHHhhh-----ccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccc
Q 007799 284 YLGTVHHEFHFTVQDGIDAI-EEVIYHV-----ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (589)
Q Consensus 284 ~lg~~h~~v~~~~~~~~~~l-~~~i~~~-----e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~ 354 (589)
.+|++..++.++ +..+.+ ..+.... +.+....+.+-+-|-.+...|.+.|.=|+=|| -.+|+.-||..
T Consensus 82 ~lg~~~~~i~I~--~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTg-n~sE~~~Gy~T 155 (268)
T COG0171 82 ALGIDYKEINIK--PAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTG-NKSELALGYFT 155 (268)
T ss_pred HhCCceEEEecH--HHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCC-cHHHHhcCcee
Confidence 999996666654 334432 2222211 11111223334455555566666665555555 46688888854
No 110
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.63 E-value=0.00027 Score=74.93 Aligned_cols=109 Identities=24% Similarity=0.291 Sum_probs=67.4
Q ss_pred EeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC-CcHHHHHHHHHHhCC-cceEEEeChhhhHHhHHHHH
Q 007799 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGT-VHHEFHFTVQDGIDAIEEVI 307 (589)
Q Consensus 230 v~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-~D~~~A~~vA~~lg~-~h~~v~~~~~~~~~~l~~~i 307 (589)
++.|||||||.+...+.+.. +..++||++..-+. .|...+++-|..+|. +|+.+....+-.-+.+-..|
T Consensus 2 LAySGGLDTS~~l~~L~e~~---------~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI 72 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEG---------GYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAI 72 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTT---------TEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHH
T ss_pred eeeCCChHHHHHHHHHHhhc---------CceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHH
Confidence 57899999999988887754 25899999977554 689999999999997 78777765443335554555
Q ss_pred hhh----ccCccccccchHHH--HHHHHHHHhcCCeEEE---eCCcchhc
Q 007799 308 YHV----ETYDVTTIRASTPM--FLMSRKIKSLGVKMVI---SGEGSDEI 348 (589)
Q Consensus 308 ~~~----e~~~~~~~~~~~~~--~~l~~~a~~~g~~vvL---sG~GgDEl 348 (589)
... ..|...+ ..+-|. -.+.+.|++.|++++. ||-|-|++
T Consensus 73 ~anA~Yeg~YpL~t-sl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqv 121 (388)
T PF00764_consen 73 KANALYEGRYPLST-SLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQV 121 (388)
T ss_dssp HTT--BTTTB--CC-CCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHH
T ss_pred HHHHHhCCCccccc-cchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchh
Confidence 433 2232211 112222 2345667788999886 56777875
No 111
>PRK05370 argininosuccinate synthase; Validated
Probab=97.62 E-value=0.00048 Score=73.59 Aligned_cols=118 Identities=20% Similarity=0.171 Sum_probs=78.2
Q ss_pred hhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHHhCCc-ceEEEeCh
Q 007799 220 KRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTV-HHEFHFTV 296 (589)
Q Consensus 220 ~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~lg~~-h~~v~~~~ 296 (589)
+.|....+|+.+.|||||||+++..+.+. +..++||++..-+ ..|++.+++-|..+|.. |..+....
T Consensus 6 ~~l~~~~KVvLAYSGGLDTSv~l~wL~e~----------~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~ 75 (447)
T PRK05370 6 KHLPVGQRVGIAFSGGLDTSAALLWMRQK----------GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRA 75 (447)
T ss_pred hhCCCCCEEEEEecCCchHHHHHHHHHhc----------CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHH
Confidence 34555668999999999999998877654 2579999987644 46889999999999984 66666554
Q ss_pred hhhHHhHHHHHhhhcc--------Cccc-cccchHHHHHHHHHHHhcCCeEEE---eCCcchhc
Q 007799 297 QDGIDAIEEVIYHVET--------YDVT-TIRASTPMFLMSRKIKSLGVKMVI---SGEGSDEI 348 (589)
Q Consensus 297 ~~~~~~l~~~i~~~e~--------~~~~-~~~~~~~~~~l~~~a~~~g~~vvL---sG~GgDEl 348 (589)
+-.-+.+ ..|...-. |... .+.-.+.--.+.+.|++.|++++. ||-|-|++
T Consensus 76 eF~e~~i-~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQv 138 (447)
T PRK05370 76 QLVAEGI-AAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE 138 (447)
T ss_pred HHHHHHH-HHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchH
Confidence 3333445 55543221 3221 111111122455778888999886 66777876
No 112
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.56 E-value=0.00082 Score=69.46 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=68.5
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-CCCc-HHHHHHHHHHhCCcceEEEeChhhhHHhH
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~A~~vA~~lg~~h~~v~~~~~~~~~~l 303 (589)
..+.+++|||.||++++.++.+..... ..++..+++... ..+| .+++.++++.+|++++.+... +.+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~------~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~--~~i--- 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG------KLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP--EGI--- 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc------CCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh--HHH---
Confidence 467899999999999999998875321 135666666422 1344 578999999999998776432 211
Q ss_pred HHHHhhhccCccc--cccchHHHHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 304 EEVIYHVETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 304 ~~~i~~~e~~~~~--~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
......+... ..+...-...+.+.+++.|++++++|.=.||-
T Consensus 97 ---~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~ 140 (301)
T PRK05253 97 ---ARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEE 140 (301)
T ss_pred ---hcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchh
Confidence 1111111110 11111112345677778899999999999883
No 113
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.53 E-value=0.00027 Score=68.37 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=52.3
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEee---CCCCCcHHHHHHHHHHhCC-----cceEEEeCh
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG---LEGSPDLKYAKEVADYLGT-----VHHEFHFTV 296 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig---~~~~~D~~~A~~vA~~lg~-----~h~~v~~~~ 296 (589)
..++-++||||+||.+-+.++.+.+ -.+...++. +.+......++++++.+.. ....+.++.
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~krG----------~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~ 72 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKRG----------CEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDF 72 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCBT-----------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECH
T ss_pred CceEEEEecCCccHHHHHHHHHHCC----------CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECc
Confidence 4567899999999999888887643 455555543 3333445566666666532 223333443
Q ss_pred hhhHHhHHHHHhhhccCccccccchHHHHHHH-HHHHhcCCeEEEeCCcch
Q 007799 297 QDGIDAIEEVIYHVETYDVTTIRASTPMFLMS-RKIKSLGVKMVISGEGSD 346 (589)
Q Consensus 297 ~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~-~~a~~~g~~vvLsG~GgD 346 (589)
.+.... +...... ..+.+..-..|+.++ +.+.+.|++.++|||---
T Consensus 73 ~~~~~~---i~~~~~~-~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLG 119 (197)
T PF02568_consen 73 TEVQKE---ILRGVKE-RNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLG 119 (197)
T ss_dssp HHHHHH---HHHHS-G-GGHHHHHHHHHHHHHHHHHHHTT--EEE----SS
T ss_pred HHHHHH---HHhcCCc-cchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhH
Confidence 333333 2222111 111222223344443 456678999999997533
No 114
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.50 E-value=0.00067 Score=64.82 Aligned_cols=122 Identities=23% Similarity=0.232 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhhcc---------C-CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC---CCc-
Q 007799 209 VLRQAFENAVIKRLMT---------D-VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPD- 274 (589)
Q Consensus 209 ~lr~~l~~aV~~rl~s---------d-~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~---~~D- 274 (589)
+..+.+.+.++.||.. | ..++|.+|||.|||+.+-++.... |++..-. .+.
T Consensus 34 e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR~~g---------------~~v~p~t~~Lp~~i 98 (255)
T COG1365 34 EVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILRWAG---------------FTVDPGTAILPDHI 98 (255)
T ss_pred HHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHHhhc---------------eeeccccccCCHHH
Confidence 3556677777778753 2 668999999999999888877543 3332211 123
Q ss_pred HHHHHHHHHHhCCcceEEEeChhhhHHhHHH-HHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 275 LKYAKEVADYLGTVHHEFHFTVQDGIDAIEE-VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 275 ~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~-~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
...+...+..+|+.|..+... +..+.+ ++. ..|.++.-+.++-+-.+..++++.+++++.+|++ |-.||.
T Consensus 99 r~n~~~l~~~lg~~p~yveed----l~~i~kGaln--GRfhpCGRCh~~I~~~V~~k~re~di~~vafGDl---Ls~G~~ 169 (255)
T COG1365 99 RRNKEELETLLGEVPEYVEED----LEDIEKGALN--GRFHPCGRCHSMIENAVMDKARELDIDVVAFGDL---LSTGYG 169 (255)
T ss_pred hHHHHHHHHHHccCHHHHHHH----HHHHHhhhcc--CCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccc---cccccc
Confidence 345678889999876544221 222221 111 2344443344566667788899999999999954 556775
Q ss_pred c
Q 007799 354 Y 354 (589)
Q Consensus 354 ~ 354 (589)
.
T Consensus 170 s 170 (255)
T COG1365 170 S 170 (255)
T ss_pred c
Confidence 3
No 115
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.45 E-value=0.00038 Score=69.89 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=34.6
Q ss_pred CEEEEEeeeeecCC--CCCCCCeeec--CCcEEEEEEEEECChHHH
Q 007799 43 DFYLAHQRLAIIDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEAL 84 (589)
Q Consensus 43 ~~~l~h~RLai~d~--~~~~QP~~~~--~~~~~l~~NGeIyN~~eL 84 (589)
.++++|.|-|+.+. ..+.|||+.+ ...+.++|||.|-+++.+
T Consensus 71 ~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 71 ELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred cEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 48899999999995 3588999864 345689999999999874
No 116
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00012 Score=81.82 Aligned_cols=91 Identities=24% Similarity=0.272 Sum_probs=77.0
Q ss_pred cccccCCceeecCCCChHHHHHHhcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCCChhhHH-H
Q 007799 385 KSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWI-D 463 (589)
Q Consensus 385 r~~~a~gvE~R~PfLD~~lve~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~-~ 463 (589)
+ +|++++|.|+||+|. ++++.+||.+.|...+ .+|+++|.+.+. .+|+.++.|+|.+|..+.. .|. .
T Consensus 419 ~-~m~~~le~Rvpf~~~--~~l~~~i~~~~K~~~~----~gk~~lr~~~~~----~~p~~~~~r~k~~~~~~~~-~~~~~ 486 (542)
T COG0367 419 R-SMAKKLERRVPFSDG--VELPEEIPWREKIAFG----YGKGILRIAYEK----ILPDFILSRKKLGFPKPLW-GRYYE 486 (542)
T ss_pred h-hhhhhhheecccccc--hhhHhhCChhhhhhcC----CcchhhHhhhhc----cCcHHHhcccccCCCcccc-ccccc
Confidence 7 999999999999999 9999999999999763 579999999999 9999999999999999965 344 2
Q ss_pred -HHHHHHHHhcChHHHHhcCccCCC
Q 007799 464 -GLKAHAEQHVTDKMVQNAQYIFPH 487 (589)
Q Consensus 464 -~l~~~~~~~l~d~~l~~~~~~~~~ 487 (589)
...+++.+.+.++.....++++..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (542)
T COG0367 487 NSLLLWLYRLIEEEFSPEYPLVDLA 511 (542)
T ss_pred chHHHHHHHHHhhhcccccchhhhH
Confidence 467888888888766666666543
No 117
>PRK08576 hypothetical protein; Provisional
Probab=97.41 E-value=0.0012 Score=71.57 Aligned_cols=123 Identities=24% Similarity=0.243 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhhccCC--ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC--CCCCcHHHHHHHHHH
Q 007799 209 VLRQAFENAVIKRLMTDV--PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADY 284 (589)
Q Consensus 209 ~lr~~l~~aV~~rl~sd~--pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~D~~~A~~vA~~ 284 (589)
.+-+.+++.+.+-+.... ++.+.+|||.||++++.++.+.. .++..+++.. ......++++++++.
T Consensus 216 ~~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~----------~~V~aV~iDTG~e~pet~e~~~~lae~ 285 (438)
T PRK08576 216 EVLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAF----------GDVTAVYVDTGYEMPLTDEYVEKVAEK 285 (438)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhC----------CCCEEEEeCCCCCChHHHHHHHHHHHH
Confidence 344455555544444333 79999999999999999888765 2466776643 222357889999999
Q ss_pred hCCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchh
Q 007799 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (589)
Q Consensus 285 lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDE 347 (589)
+|++++...++... .+.. +...... ...+...-...+.+.+++.|+.++++|+=.||
T Consensus 286 LGI~lii~~v~~~~---~~~~--~g~p~~~-~rcCt~lK~~pL~raake~g~~~iatG~R~dE 342 (438)
T PRK08576 286 LGVDLIRAGVDVPM---PIEK--YGMPTHS-NRWCTKLKVEALEEAIRELEDGLLVVGDRDGE 342 (438)
T ss_pred cCCCEEEcccCHHH---Hhhh--cCCCCcc-cchhhHHHHHHHHHHHHhCCCCEEEEEeeHHH
Confidence 99988763222111 1110 0111000 01111111124556677788999999987666
No 118
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.29 E-value=0.0014 Score=71.43 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=54.4
Q ss_pred HHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC--CC-CC-cHHHHHHHHHHhCCcceE
Q 007799 216 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EG-SP-DLKYAKEVADYLGTVHHE 291 (589)
Q Consensus 216 ~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~-~~-D~~~A~~vA~~lg~~h~~ 291 (589)
..+...+....++.+.+|||.||++++.++.+..... .+.++.++++.. .. ++ +..+++.+|+.+|++++.
T Consensus 6 ~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-----~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~ 80 (436)
T PRK10660 6 LTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-----PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVV 80 (436)
T ss_pred HHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-----CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEE
Confidence 3444556667789999999999999999887643111 124677777754 22 32 357889999999999998
Q ss_pred EEeCh
Q 007799 292 FHFTV 296 (589)
Q Consensus 292 v~~~~ 296 (589)
+.++.
T Consensus 81 ~~~~~ 85 (436)
T PRK10660 81 ERVQL 85 (436)
T ss_pred EEEec
Confidence 87754
No 119
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0027 Score=66.21 Aligned_cols=112 Identities=23% Similarity=0.216 Sum_probs=74.5
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC-CCcHHHHHHHHHHhCCc-ceEEEeChhhhHHh
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGTV-HHEFHFTVQDGIDA 302 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~-~~D~~~A~~vA~~lg~~-h~~v~~~~~~~~~~ 302 (589)
...|++..|||||+|++.-.+.+.. +..+.|||+..-+ .+|+..+++-|..+|.. |+.+....+-.-+.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~---------~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~~~y 74 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKG---------GAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFVEDY 74 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhc---------CceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHHHHH
Confidence 3568899999999999888887654 3679999987654 48999999999999987 66666544333344
Q ss_pred HHHHHhhh---cc-CccccccchHHHHH----HHHHHHhcCCeEEE---eCCcchhc
Q 007799 303 IEEVIYHV---ET-YDVTTIRASTPMFL----MSRKIKSLGVKMVI---SGEGSDEI 348 (589)
Q Consensus 303 l~~~i~~~---e~-~~~~~~~~~~~~~~----l~~~a~~~g~~vvL---sG~GgDEl 348 (589)
+-..+... |. |...+ ++.--+ +.+.|++.|+..+- ||-|-|.+
T Consensus 75 i~~~i~ana~Yeg~YpL~T---alaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 75 IFPAIKANALYEGVYPLGT---ALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred HHHHHHhhceeeccccccc---hhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCcee
Confidence 43444322 33 33222 222222 34556777877764 77788876
No 120
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=97.16 E-value=0.0026 Score=73.30 Aligned_cols=89 Identities=25% Similarity=0.222 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhccC--CceEEeecCCcchHHHHHHH-------HHHhcccc--c----------ccccCCc-----
Q 007799 208 LVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASIT-------ARHLAGTK--A----------ARQWGTQ----- 261 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd--~pvgv~LSGGLDSS~Iaala-------~~~~~~~~--~----------~~~~~~~----- 261 (589)
+++.....-.++.+++.. ..+-+-||||+||+++|+++ .+.+.... . .+.|.++
T Consensus 329 ~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (700)
T PLN02339 329 EEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEF 408 (700)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhh
Confidence 567777667777777532 44667899999999998886 33331110 0 0000011
Q ss_pred ----ceeEEeeCCCCC--cHHHHHHHHHHhCCcceEEEeCh
Q 007799 262 ----LHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTV 296 (589)
Q Consensus 262 ----l~tfsig~~~~~--D~~~A~~vA~~lg~~h~~v~~~~ 296 (589)
+++.+.+..++. ....|+++|+.+|+.|+++.+++
T Consensus 409 ~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~ 449 (700)
T PLN02339 409 AKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDG 449 (700)
T ss_pred hcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 456665544443 56789999999999999988764
No 121
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=96.65 E-value=0.014 Score=60.05 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=67.4
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-CCCc-HHHHHHHHHHhCCcceEEEeChhhhHHhHHH
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~ 305 (589)
..+++|||.||++++.++.+..... ..++..+++... ..+| ..+..++++.+|++++.+... +.+.
T Consensus 22 ~vv~~SGGKDS~VlLhLa~kaf~~~------~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~v~~~~--~~~~---- 89 (294)
T TIGR02039 22 PVMLYSIGKDSSVLLHLARKAFYPG------PLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLIVHSNE--EGIA---- 89 (294)
T ss_pred cEEEEecChHHHHHHHHHHHHhccc------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEEech--hhhh----
Confidence 3578999999999999999876321 145677776431 1344 467889999999988776543 2111
Q ss_pred HHhhhccCc--cccccchHHHHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 306 VIYHVETYD--VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 306 ~i~~~e~~~--~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
+....+. ....+...-...|.+.+.+.|.+++++|.=-||-
T Consensus 90 --~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe 132 (294)
T TIGR02039 90 --DGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEE 132 (294)
T ss_pred --cCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhh
Confidence 0111111 0001112223456677778899999999988885
No 122
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.05 Score=54.51 Aligned_cols=75 Identities=24% Similarity=0.236 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEee--CCCCCcHHHHHH-HHHH
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKE-VADY 284 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~D~~~A~~-vA~~ 284 (589)
+.+.+...+.++.++. +..+-+.||||.|||+.|.++.+.. +.++++.-+. +-.-.|.+...+ ..++
T Consensus 5 ~~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~Ai---------Gd~l~cvfVD~GLlR~~E~e~V~~~f~~~ 74 (315)
T COG0519 5 ENFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAI---------GDQLTCVFVDHGLLRKGEAEQVVEMFREH 74 (315)
T ss_pred HHHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHh---------hcceEEEEecCCcccCCcHHHHHHHHHhh
Confidence 3455555666777765 6778899999999999999999887 4677777663 323345544443 4455
Q ss_pred hCCcceEE
Q 007799 285 LGTVHHEF 292 (589)
Q Consensus 285 lg~~h~~v 292 (589)
+|++...+
T Consensus 75 ~~~nl~~V 82 (315)
T COG0519 75 LGLNLIVV 82 (315)
T ss_pred cCCceEEE
Confidence 77775544
No 123
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=96.39 E-value=0.013 Score=58.73 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=44.8
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--eCCCCC-cHHHHHHHHHHhCCcceEEEeC
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSP-DLKYAKEVADYLGTVHHEFHFT 295 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~-D~~~A~~vA~~lg~~h~~v~~~ 295 (589)
++.+.+|||.||++++.++.+.. .++..+.+ |.. .+ -.++++++++++|++.+.+...
T Consensus 42 ~i~vs~SGGKDS~vlL~L~~~~~----------~~i~vvfiDTG~~-~pet~e~~~~~~~~~gl~l~v~~~~ 102 (241)
T PRK02090 42 RLALVSSFGAEDAVLLHLVAQVD----------PDIPVIFLDTGYL-FPETYRFIDELTERLLLNLKVYRPD 102 (241)
T ss_pred CEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCC-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence 48999999999999999998753 45666665 332 34 3568899999999998877654
No 124
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=96.19 E-value=0.031 Score=59.26 Aligned_cols=110 Identities=21% Similarity=0.272 Sum_probs=59.1
Q ss_pred cCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC-CcHH--HHHHHH-HHhCCcceEEEeChhhh
Q 007799 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLK--YAKEVA-DYLGTVHHEFHFTVQDG 299 (589)
Q Consensus 224 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-~D~~--~A~~vA-~~lg~~h~~v~~~~~~~ 299 (589)
+..++-++||||+||-+-+.++.+.+ -.++..++..++. .+.. -+...+ ..+...++.+.+..-++
T Consensus 174 t~Gk~l~LlSGGIDSPVA~~l~mkRG----------~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f 243 (383)
T COG0301 174 TQGKVLLLLSGGIDSPVAAWLMMKRG----------VEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPF 243 (383)
T ss_pred cCCcEEEEEeCCCChHHHHHHHHhcC----------CEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEch
Confidence 45667899999999999888887653 5677666644332 2222 222333 33443333333222222
Q ss_pred HHhHHHHHhhh-ccCccccccchHHHHHHHH-HHHhcCCeEEEeCCcc
Q 007799 300 IDAIEEVIYHV-ETYDVTTIRASTPMFLMSR-KIKSLGVKMVISGEGS 345 (589)
Q Consensus 300 ~~~l~~~i~~~-e~~~~~~~~~~~~~~~l~~-~a~~~g~~vvLsG~Gg 345 (589)
.+...++.... +.|..... --.||.++. .+.+.|+..+.||+-=
T Consensus 244 ~~v~~~i~~~~~~~y~~v~~--rR~M~riA~~iae~~g~~aIvtGEsL 289 (383)
T COG0301 244 TEVQEEILEKVPESYRCVLL--KRMMYRIAEKLAEEFGAKAIVTGESL 289 (383)
T ss_pred HHHHHHHHhhcCccceehHH--HHHHHHHHHHHHHHhCCeEEEecCcc
Confidence 23333333222 33332111 123555544 6667899999999753
No 125
>PRK08557 hypothetical protein; Provisional
Probab=95.96 E-value=0.064 Score=58.01 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=43.3
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-CCCc-HHHHHHHHHHhCCcceEEE
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFH 293 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~A~~vA~~lg~~h~~v~ 293 (589)
..++.+.+|||.||++++.++.+.. .++..+.+... ..+| ..+++++++.+|++.+.+.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~~----------~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~ 241 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEVI----------PDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLD 241 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHhC----------CCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3578899999999999998887654 34556665321 1233 5689999999999877764
No 126
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=95.74 E-value=0.027 Score=52.94 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=54.1
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEE--eeCCCCCc-HHHHHHHHHHhCCcceEEEeChhhhHHhHH
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFC--VGLEGSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~D-~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~ 304 (589)
+.+.+|||-||++++.++.+... ++..+. .+. +.++ ..+++.+++.+|++.+.+.. .......+.
T Consensus 2 i~vs~SGGKDS~v~l~l~~~~~~----------~~~vv~~dtg~-e~p~t~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~ 69 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLAREAGR----------KVPVVFIDTGY-EFPETYEFVDELAKRYGIPIIVYRP-PETFEQRFI 69 (174)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHT----------TCEEEEEE-ST-B-HHHHHHHHHHHHHTTCEEEEEET-TSHHHHHHH
T ss_pred eEEEecCCHHHHHHHHHHHHhcC----------CCcEEEEecCc-cCHHHHHHHHHHHhhhhhhhhhccc-ccchhhccc
Confidence 67899999999999999988773 333333 333 2344 47899999999988444433 222222221
Q ss_pred HHHhhhccCccccccc-hHHH---HHHHHHHHhcCCeEEEeCCcchhcc
Q 007799 305 EVIYHVETYDVTTIRA-STPM---FLMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 305 ~~i~~~e~~~~~~~~~-~~~~---~~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
..-. +.. ..+. .... --+.+.+++.+..++++|.=+||=-
T Consensus 70 ~~~~----~~~-~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~ 113 (174)
T PF01507_consen 70 LYGW----PSK-LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESP 113 (174)
T ss_dssp HHHH----STT-HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTT
T ss_pred cccc----cch-hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh
Confidence 1110 100 0000 0001 1133445566778999999999843
No 127
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=95.56 E-value=0.11 Score=53.93 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=66.1
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-CCCc-HHHHHHHHHHhCCcceEEEeChhhhHHhHH
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~ 304 (589)
+++++.|||.||++++.++.+..... ..++..+++... ..+| ..+..++++.+|++++.+.. ++.+.
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~------~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~--~~~~~--- 107 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPT------RPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHN--PDGIA--- 107 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhccc------CCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecC--hHHHH---
Confidence 45789999999999999999875321 145677776432 2244 57888999999998766542 22221
Q ss_pred HHHhhhccCcc--ccccchHHHHHHHHHHHhcCCeEEEeCCcchh
Q 007799 305 EVIYHVETYDV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (589)
Q Consensus 305 ~~i~~~e~~~~--~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDE 347 (589)
. ....+.. ...+...-..-|.+.+.+.|.+++++|.=-||
T Consensus 108 ~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE 149 (312)
T PRK12563 108 R---GIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDE 149 (312)
T ss_pred h---CCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHH
Confidence 1 1111110 01111111234556666678899999988887
No 128
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=95.44 E-value=0.14 Score=50.61 Aligned_cols=60 Identities=27% Similarity=0.225 Sum_probs=41.6
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC-------CCcHHHHHHHHHHhCCcceEEEeCh
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFTV 296 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~-------~~D~~~A~~vA~~lg~~h~~v~~~~ 296 (589)
++.+++|||-||++-+..+.+.. .....++.-..+ ..+...++..|+.+|++++.+..+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~~----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEEH----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHcC----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 36789999999999777665532 223333332221 2578899999999999998776543
No 129
>PRK13795 hypothetical protein; Provisional
Probab=95.36 E-value=0.1 Score=59.88 Aligned_cols=60 Identities=32% Similarity=0.422 Sum_probs=45.0
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--eCCCCCcHHHHHHHHHHhCCcceEEEe
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHF 294 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~D~~~A~~vA~~lg~~h~~v~~ 294 (589)
+.++.+.+|||.||++++.++.+.. .++..+.+ |++-....++++++++.+|++++.+..
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~----------~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~ 304 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREAL----------KDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADA 304 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhC----------CCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcc
Confidence 4579999999999999999998765 24555554 332223467899999999998777654
No 130
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=95.27 E-value=0.061 Score=44.44 Aligned_cols=34 Identities=38% Similarity=0.553 Sum_probs=24.7
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEee
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG 268 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig 268 (589)
+.+.+|||.||+.++.++.+.... ...+..++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~-------~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSG-------GPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhc-------CCCEEEEEeH
Confidence 357899999999999999876311 2456666665
No 131
>PRK13794 hypothetical protein; Provisional
Probab=94.67 E-value=0.27 Score=54.38 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=43.8
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--eCCCCCcHHHHHHHHHHhCCcceEEE
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFH 293 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~D~~~A~~vA~~lg~~h~~v~ 293 (589)
..++.+.+|||.||++++.++.+... .++..+.+ |++-....++++++++.+|++.+.+.
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~---------~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~ 308 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALG---------INFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTK 308 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhC---------CCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEc
Confidence 35789999999999999999887642 34555655 33322345678999999999876654
No 132
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=94.63 E-value=0.12 Score=52.36 Aligned_cols=121 Identities=20% Similarity=0.280 Sum_probs=71.5
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHH
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~ 305 (589)
..+....|||||+|.|.+-+.+. |..+.+|....-.-.|.+.|++-|-..|..--.+.=-.+++ +.+
T Consensus 6 ~~vVLAySGgLDTscil~WLkeq----------GyeViay~AnvGQ~edfe~ar~kAlk~Gakk~~~ed~~~eF---ved 72 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQ----------GYEVIAYLANVGQKEDFEEARKKALKSGAKKVVVEDVREEF---VED 72 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhc----------CceEEEeeccccchhhHHHHHHhhhhcCceEEEehhhhHHH---Hhh
Confidence 44567799999999999888775 37899998765556799999999999998643332112222 233
Q ss_pred HHhhh-------c-cCcccc-c-cchHHHHHHHHHHHhcCCeEE---EeCCcchhccccccccccCCC
Q 007799 306 VIYHV-------E-TYDVTT-I-RASTPMFLMSRKIKSLGVKMV---ISGEGSDEIFGGYLYFHKAPN 360 (589)
Q Consensus 306 ~i~~~-------e-~~~~~~-~-~~~~~~~~l~~~a~~~g~~vv---LsG~GgDElfgGY~~~~~~p~ 360 (589)
.+|.. | .|-..+ + |..+. ......+++.|++.+ -||-|-|.+-.--.+|..+|.
T Consensus 73 fi~Pa~qs~a~YEd~YLLGTSlaRp~ia-~~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~ysl~P~ 139 (412)
T KOG1706|consen 73 FIWPALQSSALYEDRYLLGTSLARPVIA-KAQVDVAQREGAKAVSHGCTGKGNDQVRFELTFYSLKPD 139 (412)
T ss_pred cchhhhhhcchhhceeeeccccccchhh-hhhhhHHhhcCceeeecccccCCCcceeeeeeeeccCCc
Confidence 33211 1 121111 0 11111 111233455566544 588899998655555555553
No 133
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.15 E-value=0.19 Score=58.96 Aligned_cols=133 Identities=22% Similarity=0.205 Sum_probs=85.4
Q ss_pred CEEEEEeeeeecCCC--CCCCCeeecCCcEEEEEEEEEC------ChHHHHHHh-c------------CCCCCCCChHHH
Q 007799 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIY------NHEALRERL-T------------NHKFRTGSDCDV 101 (589)
Q Consensus 43 ~~~l~h~RLai~d~~--~~~QP~~~~~~~~~l~~NGeIy------N~~eL~~~l-~------------~~~~~t~sD~Ev 101 (589)
..+|.|.|.++.... .-+|||. ++.|||||. |+-.-|+-+ + ...-...||+.-
T Consensus 285 ~~AlvHsRFSTNTfPsWdrAQPmR------~l~HNGEINTlrGN~NwMraREg~mks~~~~~e~~kl~Pive~~~SDSa~ 358 (2142)
T KOG0399|consen 285 HFALVHSRFSTNTFPSWDRAQPMR------FLAHNGEINTLRGNKNWMRAREGVMKSAVFKDELNKLLPIVEEGGSDSAA 358 (2142)
T ss_pred cceeeeeccccCCCCCccccccch------hhhccCceeeeccchhHHHHHHHhhhcchhhhhhhhhcccccCCCCchhh
Confidence 578999999998754 3579985 588999996 222222211 0 111133455422
Q ss_pred ---HHHHHHHHh---------------------------------HHHHhhcccceEEEEEECCCCEEEEEEcCCCCcee
Q 007799 102 ---IAHLYEEYG---------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSL 145 (589)
Q Consensus 102 ---il~ly~~~G---------------------------------~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PL 145 (589)
+++++-+-| .-.++-.+|.=-+.+-|. +.+=+.=||-|.||.
T Consensus 359 lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpWDGPALl~FsDG--ry~GA~LDRNGLRP~ 436 (2142)
T KOG0399|consen 359 LDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPWDGPALLTFSDG--RYCGAILDRNGLRPA 436 (2142)
T ss_pred hhHHHHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHHHhhcCCCCCCceEEEecCC--ceeeeeeccCCCcce
Confidence 333333333 113456788877777776 667788899999999
Q ss_pred EEEEecCceEEEEcCccccccccccc---eeeCCccEEEeC
Q 007799 146 YIGWGLDGSIWISSELKGLNDDCEHF---EAFPPGHLYSSK 183 (589)
Q Consensus 146 yy~~~~~g~~~faSe~k~L~~~~~~I---~~lpPG~~~~~~ 183 (589)
-|+...|+.++.|||.-.+--..+.| -+|.||.++.++
T Consensus 437 Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 437 RYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred eeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 88888789999999976553222222 368899987543
No 134
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=94.05 E-value=0.58 Score=45.84 Aligned_cols=57 Identities=7% Similarity=0.088 Sum_probs=41.2
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-CCCcH-HHHHHHHHHhCCcceEE
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDL-KYAKEVADYLGTVHHEF 292 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~D~-~~A~~vA~~lg~~h~~v 292 (589)
..+.+..|||.||++++-++.+.. +++..+.+... ..+|. ++..++++.+|+..+.+
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~----------~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~ 72 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKIS----------PDIPVIFLDTGYHFPETYELIDELTERYPLNIKVY 72 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 368999999999999999998764 35566655432 23453 57899999999764443
No 135
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=93.64 E-value=0.3 Score=52.06 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=53.8
Q ss_pred HHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--eCCCCCcHHHHHHHHHHhCCcceEEE
Q 007799 216 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFH 293 (589)
Q Consensus 216 ~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~D~~~A~~vA~~lg~~h~~v~ 293 (589)
+-+++++. +..+-+++|||.|||+.++++.+.+.. .++++..+ |+..-.|....++.-.+||++.+.+.
T Consensus 222 ~~i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~--------~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~ 292 (552)
T KOG1622|consen 222 NEIRKWVG-DYKVLVAVSGGVDSTVCAALLRRALGP--------DRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVD 292 (552)
T ss_pred HHHHHHhc-ccceEEEecCCchHHHHHHHHHHhhCC--------CceEEEEecccchhhhHHHHHHHHHHHcCCceEEee
Confidence 44555655 667889999999999999999988732 46788776 44444677777777777999988877
Q ss_pred eCh
Q 007799 294 FTV 296 (589)
Q Consensus 294 ~~~ 296 (589)
.+.
T Consensus 293 as~ 295 (552)
T KOG1622|consen 293 ASE 295 (552)
T ss_pred chH
Confidence 654
No 136
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=92.78 E-value=0.8 Score=49.99 Aligned_cols=123 Identities=21% Similarity=0.205 Sum_probs=63.0
Q ss_pred cCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC-CCCCcH--------HHHHHHHHHhCCcceEEEe
Q 007799 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL-EGSPDL--------KYAKEVADYLGTVHHEFHF 294 (589)
Q Consensus 224 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~-~~~~D~--------~~A~~vA~~lg~~h~~v~~ 294 (589)
.+.|+.+.+|||-||++++.++.+.+..-. .....++++-++... -+.|+. ...+..|+..|.+.....+
T Consensus 12 ~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp-~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~v 90 (447)
T TIGR03183 12 DDIPWVVGYSGGKDSTAVLQLIWNALAALP-AEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPIEPHRL 90 (447)
T ss_pred cCCceEEEeCCCHHHHHHHHHHHHHHHhcc-ccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCeEEEec
Confidence 567899999999999999988876642210 000012344444321 022332 2234566777777655555
Q ss_pred ChhhhHHhHHHHHhhh-ccCccccccchH------HH-HHHHHHHHhcCCeEEEeCCcchhc
Q 007799 295 TVQDGIDAIEEVIYHV-ETYDVTTIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 295 ~~~~~~~~l~~~i~~~-e~~~~~~~~~~~------~~-~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
.+......+..++-.. ..|. ...+..+ |+ -++.+.+++.|..++++|.=.||=
T Consensus 91 ~P~~~~~Fwv~liGrG~P~P~-~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES 151 (447)
T TIGR03183 91 TPEIKDTFWVNLIGKGYPAPR-QKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAES 151 (447)
T ss_pred CCCcchHHHHHHhcCCCCCCC-CCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhH
Confidence 5532222233333211 1111 1122221 22 123334445677899999888874
No 137
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=92.69 E-value=1.2 Score=44.37 Aligned_cols=64 Identities=6% Similarity=0.017 Sum_probs=45.2
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-CCCc-HHHHHHHHHHhCCcceEEEeChh
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQ 297 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~A~~vA~~lg~~h~~v~~~~~ 297 (589)
..++.+..|||.||++++-++++... +++..|.+... ..+| .+++.++++.+|...+.+.+.+.
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~---------~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~~ 90 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE---------PMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGC 90 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC---------CCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCCc
Confidence 34588999999999999999988751 34556665432 2244 47899999999966555555543
No 138
>PRK06850 hypothetical protein; Provisional
Probab=92.68 E-value=1.6 Score=48.44 Aligned_cols=134 Identities=18% Similarity=0.166 Sum_probs=67.9
Q ss_pred HHHHHHhhh-ccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC-CCCCcH--------HHHHHHHH
Q 007799 214 FENAVIKRL-MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL-EGSPDL--------KYAKEVAD 283 (589)
Q Consensus 214 l~~aV~~rl-~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~-~~~~D~--------~~A~~vA~ 283 (589)
+.+.++... ..+.|+.|.+|||-||++++.++.+.+..-.. .....+++.++... -+.|+. ...+..|+
T Consensus 22 ~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~-e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~ 100 (507)
T PRK06850 22 LIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPP-EKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAK 100 (507)
T ss_pred HHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcch-hccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 334455444 45789999999999999999888765431100 00012344444321 123433 22334567
Q ss_pred HhCCcceEEEeChhhhHHhHHHHHhh-hccCccccccchH------HH-HHHHHHHHhcCCeEEEeCCcchhcc
Q 007799 284 YLGTVHHEFHFTVQDGIDAIEEVIYH-VETYDVTTIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 284 ~lg~~h~~v~~~~~~~~~~l~~~i~~-~e~~~~~~~~~~~------~~-~~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
..|++.+...+++.-....+..++-. .-+|. ...|..+ |+ -++.+.+++.|-.++++|.=.||-.
T Consensus 101 ~~glpi~~~~v~P~~~~sFwv~liGrG~P~Ps-~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~ 173 (507)
T PRK06850 101 KQGLPITPHKLTPKINDTFWVNLIGKGYPAPR-RKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA 173 (507)
T ss_pred HcCCceEEEeeCCCcchhHHHHHhcCCCCCCC-CCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH
Confidence 77887665555553222223333311 11111 1222222 21 1222333455778899999888854
No 139
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.26 E-value=1.1 Score=45.53 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=42.4
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-CCCc-HHHHHHHHHHhCCcceEEE
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFH 293 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~A~~vA~~lg~~h~~v~ 293 (589)
+.++.+..|||.||++++.++.+.. .++..+.+... .-+| ..++.++++.+|++..++.
T Consensus 39 ~~~~~~~~S~Gkds~V~l~L~~k~~----------~~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~ 99 (261)
T COG0175 39 SNPVVVSFSGGKDSTVLLHLAAKAF----------PDFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYR 99 (261)
T ss_pred CCCeEEEecCchhHHHHHHHHHHhc----------CCCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEec
Confidence 4567899999999999999999876 34555554321 1233 5789999999996655443
No 140
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=91.75 E-value=0.88 Score=47.07 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=33.4
Q ss_pred cCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC
Q 007799 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG 271 (589)
Q Consensus 224 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~ 271 (589)
.-..|.|.+|||-||+++.-++++..++.+ -.+|+-+-+.+++
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~-----~~~i~VlfiD~E~ 68 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENG-----RDKISVLFIDWEA 68 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhC-----CCceEEEEEcchh
Confidence 445689999999999999999888765542 1368888888775
No 141
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=90.74 E-value=2.5 Score=41.49 Aligned_cols=60 Identities=23% Similarity=0.233 Sum_probs=40.5
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcc-eeEEeeCCC-------CCcHHHHHHHHHHhCCcceEEEeCh
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQL-HSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFTV 296 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l-~tfsig~~~-------~~D~~~A~~vA~~lg~~h~~v~~~~ 296 (589)
.+.+++|||-||..-+..|.+.. ..+ ...++-.++ .+-..++...|+.+|+++.....+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G----------~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEG----------HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcC----------CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc
Confidence 36789999999987776666542 222 233332222 2567899999999999977666554
No 142
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=87.33 E-value=2.4 Score=41.87 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=33.9
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--C-----CCcHHHHHHHHHHhCCcceEEEeC
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--G-----SPDLKYAKEVADYLGTVHHEFHFT 295 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~-----~~D~~~A~~vA~~lg~~h~~v~~~ 295 (589)
.+.++.|||-||++-+..|.+.. .....+|+-.+ + ..-....+..|+.+|+++..+..+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~~----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQH----------EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE-
T ss_pred cEEEEEcCcHHHHHHHHHHHHhC----------CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEcc
Confidence 36789999999998766665431 12223333211 1 123567788899999999888776
No 143
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=86.76 E-value=6.1 Score=39.15 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=38.0
Q ss_pred eEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC-------CCcHHHHHHHHHHhCCcceEEEe
Q 007799 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHF 294 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~-------~~D~~~A~~vA~~lg~~h~~v~~ 294 (589)
+.++.|||-||++-+..|.+. - ..+..+|+-..+ .......+..|+.+|+++..+..
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~-~---------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKE-H---------EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHh-C---------eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 568999999999877766554 1 123333332221 23567889999999999876543
No 144
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=83.84 E-value=3.7 Score=44.57 Aligned_cols=69 Identities=29% Similarity=0.394 Sum_probs=41.7
Q ss_pred eEEeecCCcchHHHHHHHHHHh-------cccc--c---------ccccC---------CcceeEEeeCCCCC-c-HHHH
Q 007799 228 FGVLLSGGLDSSLVASITARHL-------AGTK--A---------ARQWG---------TQLHSFCVGLEGSP-D-LKYA 278 (589)
Q Consensus 228 vgv~LSGGLDSS~Iaala~~~~-------~~~~--~---------~~~~~---------~~l~tfsig~~~~~-D-~~~A 278 (589)
+-+.||||+||+++|++..... ++.. . ..+|. .-++|.-+|.+++. | ...|
T Consensus 352 fflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~ra 431 (706)
T KOG2303|consen 352 FFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRRRA 431 (706)
T ss_pred eEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHHHH
Confidence 4456999999999998754322 1110 0 00111 11233334555543 3 4679
Q ss_pred HHHHHHhCCcceEEEeCh
Q 007799 279 KEVADYLGTVHHEFHFTV 296 (589)
Q Consensus 279 ~~vA~~lg~~h~~v~~~~ 296 (589)
+.+|+.+|.-|..+.++.
T Consensus 432 k~La~~igs~H~~i~iD~ 449 (706)
T KOG2303|consen 432 KELANQIGSYHIDLNIDT 449 (706)
T ss_pred HHHHHhhcceeeeeeehH
Confidence 999999999998887753
No 145
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=45.78 E-value=35 Score=36.37 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCCCc-hHHHHHHHHHHHhhhhcC-CCCCceE
Q 007799 1 MCGILAVLGCSDDS-QAKRVRVLELSRRLKHRG-PDWSGLY 39 (589)
Q Consensus 1 McGI~gi~~~~~~~-~~~~~~~~~m~~~l~hRG-pD~~g~~ 39 (589)
||||.||.+.++.. ....+.+.+|+..|.||| +++.|..
T Consensus 12 aCGig~i~~~~g~~sh~iv~~~~~~L~~m~hRG~~~adg~~ 52 (371)
T COG0067 12 ACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGYA 52 (371)
T ss_pred cCcEEEEEecCCCcchhHHHHHHHHHHhhhccCCCCCCccc
Confidence 78888888887754 335567778888888888 7766543
No 146
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=40.51 E-value=92 Score=29.89 Aligned_cols=49 Identities=8% Similarity=0.160 Sum_probs=34.8
Q ss_pred CcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-CCCc-HHHHHHHHHHhCCcceEEE
Q 007799 235 GLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFH 293 (589)
Q Consensus 235 GLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~A~~vA~~lg~~h~~v~ 293 (589)
|+||.+++.++.+.. +++..+.+... ..+| .+++.++++.+|++.+.+.
T Consensus 2 ~~~s~Vll~L~~~~~----------~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~ 52 (191)
T TIGR02055 2 GAEDVVLVDLAAKVR----------PDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLS 52 (191)
T ss_pred ChHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 789999999998875 35556655321 1244 4688999999998766654
No 147
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=40.14 E-value=92 Score=32.50 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=40.5
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--eCCCC-CcHH-HHHHHHHHhCCcceEEE
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGS-PDLK-YAKEVADYLGTVHHEFH 293 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~-~D~~-~A~~vA~~lg~~h~~v~ 293 (589)
...|++--|||-||++.|.....+..+. .++..+...++ |..+. ++.. ..++....+|++..++.
T Consensus 51 ge~v~igasGgkdstvlA~v~~~Ln~r~----~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs 119 (347)
T KOG2840|consen 51 GERVAIGASGGKDSTVLAYVLDALNERH----DYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVS 119 (347)
T ss_pred CCccccccccchhHHHHHHHHHHhhhhc----CCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEec
Confidence 3447888999999999998887654322 12334445554 22232 3443 44556678899887764
No 148
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=37.81 E-value=3.8e+02 Score=26.95 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC----CCCCcHHHH---HH
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL----EGSPDLKYA---KE 280 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~----~~~~D~~~A---~~ 280 (589)
++|.+.+.+--.+-+..++.+.+.|||| |+|-++.....+.-...-.| .+.+-|-+.- -+.+|.-|. +.
T Consensus 22 ~~l~~~~~~~s~~~~~~~g~F~i~lSGG---SLi~~L~~~l~~~~~~~i~w-~kW~if~~DER~Vp~~~~dSNyg~~~~~ 97 (252)
T KOG3147|consen 22 EALAGYIAEKSEKALKKRGRFTLALSGG---SLIQVLSKLLESPYQDDIDW-SKWHIFFVDERVVPLDDPDSNYGLAKRH 97 (252)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCC---cHHHHHHHHhcccccCCCCc-cceEEEEEeccccCCCCCcccHHHHHHh
Confidence 3444444443344445677799999999 78877776554321111133 3455554421 123444443 45
Q ss_pred HHHHhCCcce
Q 007799 281 VADYLGTVHH 290 (589)
Q Consensus 281 vA~~lg~~h~ 290 (589)
+-+++.+.+.
T Consensus 98 ~l~~v~~~~~ 107 (252)
T KOG3147|consen 98 FLSKVPIPHY 107 (252)
T ss_pred hhhhCCCCcC
Confidence 5556665555
No 149
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=36.45 E-value=20 Score=18.73 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=10.7
Q ss_pred ccCCceeecCCCCh
Q 007799 388 SAWGLEARVPFLDK 401 (589)
Q Consensus 388 ~a~gvE~R~PfLD~ 401 (589)
|.|++.+|+|-|.+
T Consensus 1 mthsmrlrfptlnq 14 (14)
T PF08057_consen 1 MTHSMRLRFPTLNQ 14 (14)
T ss_pred CccceeeeccccCC
Confidence 56788899998753
No 150
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=34.37 E-value=45 Score=36.22 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCCch-HHHHHHHHHHHhhhhcCCCCC
Q 007799 2 CGILAVLGCSDDSQ-AKRVRVLELSRRLKHRGPDWS 36 (589)
Q Consensus 2 cGI~gi~~~~~~~~-~~~~~~~~m~~~l~hRGpD~~ 36 (589)
|||-.|.+.++..+ ..-+...+++..|.|||--+.
T Consensus 1 CGvG~va~~~g~~sh~iv~~al~~L~~m~HRGa~~a 36 (413)
T cd00713 1 CGVGFVANIDGKPSHDIVQDALEALERMEHRGGVGA 36 (413)
T ss_pred CeEEEEEECCCCchHHHHHHHHHHHhhCcCCCcccC
Confidence 99988888777553 345667789999999997553
No 151
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=33.12 E-value=36 Score=33.54 Aligned_cols=51 Identities=24% Similarity=0.193 Sum_probs=29.0
Q ss_pred CCceEEeecCCcchHHHHHHH-----HHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHH
Q 007799 225 DVPFGVLLSGGLDSSLVASIT-----ARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADY 284 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala-----~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~ 284 (589)
.+-.|++||||+||..=.-+- -+.++++ ..=+.++.+||-+ ..+++++++.
T Consensus 54 kGy~g~llSGGm~srg~VPl~kf~d~lK~lke~------~~l~inaHvGfvd---E~~~eklk~~ 109 (275)
T COG1856 54 KGYEGCLLSGGMDSRGKVPLWKFKDELKALKER------TGLLINAHVGFVD---ESDLEKLKEE 109 (275)
T ss_pred cCceeEEEeCCcCCCCCccHHHHHHHHHHHHHh------hCeEEEEEeeecc---HHHHHHHHHh
Confidence 344699999999998643321 1222221 1124567788754 3455666654
No 152
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=30.04 E-value=2.8e+02 Score=26.41 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=50.2
Q ss_pred CCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcH------HHHHHHHHHhCCcceEEEeChhhhHHhHHHHH
Q 007799 234 GGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDL------KYAKEVADYLGTVHHEFHFTVQDGIDAIEEVI 307 (589)
Q Consensus 234 GGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~------~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~i 307 (589)
=|-||+.+.-.+.... ..+..|=....=.|.. ...+++|+.+|++..+-..++++.++.+.
T Consensus 7 CaPCs~~~~~~L~~~g----------~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~--- 73 (176)
T PF02677_consen 7 CAPCSTYPLERLREEG----------FDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVK--- 73 (176)
T ss_pred CccccHHHHHHHHHCC----------CCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHh---
Confidence 3678888776666542 3555554433223433 34567899999887665666665554433
Q ss_pred hhhccCcccccc----chHHHHHHHHHHHhcCCeEEE
Q 007799 308 YHVETYDVTTIR----ASTPMFLMSRKIKSLGVKMVI 340 (589)
Q Consensus 308 ~~~e~~~~~~~~----~~~~~~~l~~~a~~~g~~vvL 340 (589)
.+|.-....-| ..+-+-..++.|++.|.+..=
T Consensus 74 -~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~Ft 109 (176)
T PF02677_consen 74 -GLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFT 109 (176)
T ss_pred -hCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 33321111112 223344567778877654433
No 153
>PLN02309 5'-adenylylsulfate reductase
Probab=26.49 E-value=2.5e+02 Score=31.07 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=36.6
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-CCCc-HHHHHHHHHHhCCcceEE
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEF 292 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~A~~vA~~lg~~h~~v 292 (589)
.++++..|||-||. ++-++++.. .++.-|.+..- ..+| ..++.++++++|++.+.+
T Consensus 111 ~~ia~~~SG~ed~v-ll~l~~~~~----------~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~ 168 (457)
T PLN02309 111 NDIAIAFSGAEDVA-LIEYAHLTG----------RPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYM 168 (457)
T ss_pred CCEEEEecchHHHH-HHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 46888889766664 445665543 45666665321 1244 578999999999876655
No 154
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=22.49 E-value=9.1e+02 Score=26.26 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=65.9
Q ss_pred HHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceE
Q 007799 212 QAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 291 (589)
Q Consensus 212 ~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~ 291 (589)
+.++..+..- ...+-+.++|-|+=++..+ ...+.+. +..+.++. +.-.+-..+.+++..++|.+-..
T Consensus 80 ~~le~~iaal--~ga~~~l~fsSGmaA~~~a--l~~L~~~-------g~~iV~~~--~~Y~gT~~~l~~~~~~~gie~~~ 146 (409)
T KOG0053|consen 80 DVLESGIAAL--EGAAHALLFSSGMAAITVA--LLHLLPA-------GDHIVATG--DVYGGTLRILRKFLPKFGGEGDF 146 (409)
T ss_pred HHHHHHHHHH--hCCceEEEecccHHHHHHH--HHHhcCC-------CCcEEEeC--CCcccHHHHHHHHHHHhCceeee
Confidence 3444444443 2344478899998444333 2222321 23344443 33335567888899999987666
Q ss_pred EEeCh-hhhHHhHHH-H-HhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccc
Q 007799 292 FHFTV-QDGIDAIEE-V-IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352 (589)
Q Consensus 292 v~~~~-~~~~~~l~~-~-i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY 352 (589)
+..+. +++...+.+ . +-.+|+|..+..... -.-.+.+.|++.|+.|++ |+-|++.
T Consensus 147 vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~-DI~~l~~la~~~g~~vvV-----DnTf~~p 204 (409)
T KOG0053|consen 147 VDVDDLKKILKAIKENTKAVFLESPSNPLLKVP-DIEKLARLAHKYGFLVVV-----DNTFGSP 204 (409)
T ss_pred echhhHHHHHHhhccCceEEEEECCCCCccccc-cHHHHHHHHhhCCCEEEE-----eCCcCcc
Confidence 65443 222223322 0 113577765544321 123467888889999998 5556554
No 155
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=20.35 E-value=3.7e+02 Score=29.77 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=37.2
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC-CCCc-HHHHHHHHHHhCCcceEE
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEF 292 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~A~~vA~~lg~~h~~v 292 (589)
.++++..|||-||. ++.++.+.. +++.-|.+..- ..+| ..++.++++++|++.+.+
T Consensus 116 ~~iavasSG~edsv-Llhl~~~~~----------~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 116 NDIAIAFSGAEDVA-LIEYAHLTG----------RPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred CCEEEEeccHHHHH-HHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 35888999777765 455666553 45666665321 1244 578899999999876655
No 156
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=20.29 E-value=6.1e+02 Score=22.46 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=38.5
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC-CcHHHHHHHHHHhCCcceEEEeChhhhHHhH
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l 303 (589)
....-+++|.|-|+......+.... + ..+..|++++... ......+.+|+..|-....+.-+.+++.+.+
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~-~--------~~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~~~~~~~l~~~~ 169 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALK-Q--------QGITIYTVGIGSDSDANEFLQRLAEATGGRYFHVDNDPEDLDDAF 169 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHH-C--------TTEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE-SSSHHHHHHH
T ss_pred CceEEEEecCCCCCcchhHHHHHHH-H--------cCCeEEEEEECCCccHHHHHHHHHHhcCCEEEEecCCHHHHHHHH
Confidence 3456788999998754444444332 2 3566666665433 2346788889888765444323444444433
Done!