Query 007799
Match_columns 589
No_of_seqs 510 out of 2567
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:47:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 2E-121 8E-126 1016.3 46.8 547 2-555 1-553 (553)
2 1jgt_A Beta-lactam synthetase; 100.0 1.2E-80 4.1E-85 684.2 30.9 404 29-480 40-472 (513)
3 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 7.5E-80 2.6E-84 676.9 28.6 424 42-509 26-485 (503)
4 1ao0_A Glutamine phosphoribosy 100.0 2E-36 6.8E-41 329.0 23.7 215 2-223 1-271 (459)
5 1xff_A D-fructose-6-, glucosam 100.0 7.8E-36 2.7E-40 297.6 23.8 179 2-190 1-222 (240)
6 2bpl_A Glucosamine--fructose-6 100.0 1E-31 3.6E-36 301.8 21.5 175 2-186 1-218 (608)
7 1ecf_A Glutamine phosphoribosy 100.0 1.5E-31 5.2E-36 293.5 21.9 178 2-184 1-234 (504)
8 3mdn_A Glutamine aminotransfer 99.9 1.3E-26 4.4E-31 234.4 12.3 142 43-190 82-255 (274)
9 1te5_A Conserved hypothetical 99.8 3.6E-22 1.2E-26 200.4 4.2 174 1-188 1-252 (257)
10 1ea0_A Glutamate synthase [NAD 99.5 1.9E-14 6.4E-19 169.8 14.0 160 16-183 143-394 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.5 1.2E-13 4.2E-18 163.3 16.9 160 16-183 143-393 (1520)
12 2e18_A NH(3)-dependent NAD(+) 99.1 1.1E-10 3.7E-15 116.9 7.6 134 207-353 6-140 (257)
13 3sdb_A Glutamine-dependent NAD 99.0 5.1E-11 1.8E-15 134.7 3.6 305 208-545 342-668 (680)
14 1xng_A NH(3)-dependent NAD(+) 99.0 3.5E-10 1.2E-14 113.9 8.1 132 208-353 10-143 (268)
15 3bl5_A Queuosine biosynthesis 99.0 8.8E-10 3E-14 107.1 10.0 118 224-353 2-130 (219)
16 1kqp_A NAD+ synthase, NH(3)-de 99.0 8.6E-10 2.9E-14 111.2 9.9 142 206-354 21-169 (271)
17 3n05_A NH(3)-dependent NAD(+) 98.9 1.8E-09 6.3E-14 120.6 9.5 137 206-354 305-445 (590)
18 3k32_A Uncharacterized protein 98.8 9.7E-09 3.3E-13 99.0 10.0 111 224-349 5-115 (203)
19 3p52_A NH(3)-dependent NAD(+) 98.7 1.1E-08 3.7E-13 101.7 7.6 132 207-353 6-144 (249)
20 3fiu_A NH(3)-dependent NAD(+) 98.7 1.9E-08 6.6E-13 99.9 9.2 132 207-353 13-153 (249)
21 1wxi_A NH(3)-dependent NAD(+) 98.7 3.2E-08 1.1E-12 99.7 8.1 125 226-353 41-171 (275)
22 2pg3_A Queuosine biosynthesis 98.7 8.5E-08 2.9E-12 94.2 10.8 116 227-353 4-133 (232)
23 2dpl_A GMP synthetase, GMP syn 98.5 1.8E-07 6.3E-12 95.8 8.8 126 208-348 4-133 (308)
24 2nz2_A Argininosuccinate synth 98.5 5.1E-07 1.8E-11 95.9 11.7 111 224-345 4-121 (413)
25 1kor_A Argininosuccinate synth 98.4 8.6E-07 2.9E-11 93.9 12.1 110 227-346 2-118 (400)
26 2hma_A Probable tRNA (5-methyl 98.4 3.3E-07 1.1E-11 96.5 8.5 115 225-349 9-137 (376)
27 1vl2_A Argininosuccinate synth 98.4 9.7E-07 3.3E-11 93.3 11.5 109 226-345 15-130 (421)
28 1wy5_A TILS, hypothetical UPF0 98.4 1.3E-06 4.4E-11 89.9 11.5 126 208-348 5-138 (317)
29 3q4g_A NH(3)-dependent NAD(+) 98.3 7.2E-07 2.5E-11 89.8 7.2 140 210-354 27-181 (279)
30 2der_A TRNA-specific 2-thiouri 98.3 1.8E-06 6.2E-11 90.9 9.3 113 225-348 17-145 (380)
31 1k92_A Argininosuccinate synth 98.2 2.9E-06 1E-10 90.6 8.9 113 220-344 5-130 (455)
32 1gpm_A GMP synthetase, XMP ami 98.0 8.7E-06 3E-10 89.4 9.1 125 207-346 210-339 (525)
33 3ilv_A Glutamine-dependent NAD 98.0 1.7E-05 5.9E-10 89.0 11.1 90 207-296 283-407 (634)
34 3dpi_A NAD+ synthetase; ssgcid 98.0 5.2E-06 1.8E-10 83.6 5.8 134 212-354 31-181 (285)
35 3a2k_A TRNA(Ile)-lysidine synt 98.0 2.6E-05 8.8E-10 84.4 11.3 120 214-348 5-132 (464)
36 3tqi_A GMP synthase [glutamine 98.0 1.4E-05 4.7E-10 87.8 9.2 124 208-349 214-344 (527)
37 2ywb_A GMP synthase [glutamine 97.9 2.9E-05 9.9E-10 84.8 10.9 125 208-348 193-321 (503)
38 1sur_A PAPS reductase; assimil 97.8 6.8E-05 2.3E-09 72.4 9.7 109 226-348 45-160 (215)
39 2c5s_A THII, probable thiamine 97.7 6.8E-05 2.3E-09 79.8 9.0 108 225-348 187-303 (413)
40 4f4h_A Glutamine dependent NAD 97.7 5.7E-05 1.9E-09 83.6 8.4 138 207-355 280-426 (565)
41 2vxo_A GMP synthase [glutamine 97.7 7.7E-05 2.6E-09 84.2 9.3 80 207-295 223-304 (697)
42 3uow_A GMP synthetase; structu 97.6 0.00014 4.8E-09 80.3 10.4 126 208-348 239-373 (556)
43 1ni5_A Putative cell cycle pro 97.5 0.00027 9.3E-09 75.6 10.5 112 218-348 6-121 (433)
44 2o8v_A Phosphoadenosine phosph 97.3 0.00041 1.4E-08 68.7 8.4 108 226-347 46-160 (252)
45 1zun_A Sulfate adenylyltransfe 97.3 0.0007 2.4E-08 69.6 9.5 112 226-349 47-160 (325)
46 3rjz_A N-type ATP pyrophosphat 97.2 0.00053 1.8E-08 67.0 6.7 60 227-296 6-73 (237)
47 2oq2_A Phosphoadenosine phosph 97.1 0.00098 3.4E-08 66.3 8.6 112 226-348 42-164 (261)
48 1vbk_A Hypothetical protein PH 96.9 0.0011 3.9E-08 67.5 6.9 80 226-347 180-267 (307)
49 2goy_A Adenosine phosphosulfat 95.8 0.038 1.3E-06 55.1 10.2 59 226-295 55-115 (275)
50 2wsi_A FAD synthetase; transfe 94.5 0.048 1.6E-06 55.3 6.4 69 226-294 54-136 (306)
51 3fwk_A FMN adenylyltransferase 85.3 1.2 4.2E-05 44.7 6.4 65 227-291 60-138 (308)
52 1ofd_A Ferredoxin-dependent gl 28.0 44 0.0015 40.5 4.6 32 2-33 1-33 (1520)
53 1vl1_A 6PGL, 6-phosphogluconol 25.8 1.9E+02 0.0064 27.3 8.0 55 207-268 26-80 (232)
54 1ea0_A Glutamate synthase [NAD 24.2 54 0.0019 39.7 4.4 32 2-33 1-33 (1479)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=2.4e-121 Score=1016.26 Aligned_cols=547 Identities=57% Similarity=0.983 Sum_probs=463.2
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeCCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEEEEECCh
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NGeIyN~ 81 (589)
|||+|+++.+.........+.+|+++|+|||||++|++..++++|||+||+|+|+..+.|||.+.+++++|+|||||||+
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~ 80 (553)
T 1ct9_A 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH 80 (553)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTH
T ss_pred CEEEEEEcCCCcchhHHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECH
Confidence 99999998754423345678899999999999999999999999999999999987899999998899999999999999
Q ss_pred HHHHHHh-cCCCCCCCChHHHHHHHHHHHhHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcC
Q 007799 82 EALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (589)
Q Consensus 82 ~eL~~~l-~~~~~~t~sD~Evil~ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe 160 (589)
.+||++| ..+.|+|.||||+|+++|++||.+++++|+|+|||++||.++++++++||++|+|||||+...++.++||||
T Consensus 81 ~eLr~~L~~~~~f~s~sDtEvil~l~~~~g~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe 160 (553)
T 1ct9_A 81 QALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASE 160 (553)
T ss_dssp HHHHHHHTTTSCCCSCCTTHHHHHHHHHHTTTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESS
T ss_pred HHHHHHHhccCccCCCCcHHHHHHHHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeec
Confidence 9999999 348899999999999999999999999999999999999988999999999999999999854678999999
Q ss_pred ccccccccccceeeCCccEEEeCCCceeEeeCCCCCCC-CCCCCCCcHHHHHHHHHHHHHhhhccCCceEEeecCCcchH
Q 007799 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239 (589)
Q Consensus 161 ~k~L~~~~~~I~~lpPG~~~~~~~~~~~~y~~p~~~~~-~~~~~~~~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS 239 (589)
+++|...+++|++|||||++.+.+++.++||++.|... ..++.++.+++++++|.+||++|+++|+|+|++||||+|||
T Consensus 161 ~~al~~~~~~i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS 240 (553)
T 1ct9_A 161 MKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSS 240 (553)
T ss_dssp GGGTTTTCSEEEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHH
T ss_pred hHHHHhhcCCEEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHH
Confidence 99999999999999999999887778899999876542 23355778899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccc----ccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHHHHhhhccCcc
Q 007799 240 LVASITARHLAGTKA----ARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV 315 (589)
Q Consensus 240 ~Iaala~~~~~~~~~----~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~ 315 (589)
+|++++++...+... ..+|.++++|||+++++++|+.+|+++|+++|++||++.++.+++++.+++++++++++++
T Consensus 241 ~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~ 320 (553)
T 1ct9_A 241 IISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDV 320 (553)
T ss_dssp HHHHHHHHHC----------------CEEEEEESTTCHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHhhccccccccccccccCceeEEEecCCCCcHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCc
Confidence 999999987643100 0011124999999999889999999999999999999999999999999999999998877
Q ss_pred ccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHHHHHHHHHHhhccccccccccccccCCceee
Q 007799 316 TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEAR 395 (589)
Q Consensus 316 ~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~~l~~~dllr~dr~~~a~gvE~R 395 (589)
+.+++++++|++++.+++.|++|+|||+||||+||||.+|+.+|....|++|+.+++.+++.+|++|.||++|++|+|+|
T Consensus 321 ~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElfgGY~~~~~~~~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~R 400 (553)
T 1ct9_A 321 TTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEAR 400 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHTCSGGGGGCCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEE
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEECCCchhcccCcHhHhhCcchhhHHHHHHHHHHHHhhhcchhhhhHHhhcCceeE
Confidence 66777889999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHhcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCCChhhHHHHHHHHHHHhcCh
Q 007799 396 VPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTD 475 (589)
Q Consensus 396 ~PfLD~~lve~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d 475 (589)
+||||++|||||++||+++|+.++ ++.+|+|||+||++ +||++|+||+|+||+.|++++|++.|+++++++++|
T Consensus 401 ~PfLD~~lve~a~~lP~~~k~~~~--g~~~K~iLR~a~~~----~LP~~i~~R~K~~f~~p~~~~w~~~l~~~~~~~~~~ 474 (553)
T 1ct9_A 401 VPFLDKKFLDVAMRINPQDKMCGN--GKMEKHILRECFEA----YLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSD 474 (553)
T ss_dssp CGGGCHHHHHHHHHSCGGGTCC-----CCTTHHHHHHHGG----GSCHHHHTCCCCTTCCTTCHHHHHHHHHHHHHHSCH
T ss_pred CCcCCHHHHHHHhcCCHHHhccCC--CCcchHHHHHHHHh----hCCHHHHcCCCcCCCCCccHhHHHHHHHHHHHHhCh
Confidence 999999999999999999999752 24689999999999 999999999999999999988998899999999999
Q ss_pred HHHHhcCccCCCCCcchHHHHHHHHHHHHhCCCCccccccCCCCccccccccccccchhhccCCCCCchhHhHhhHHHhh
Q 007799 476 KMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAEWANNLDPSGRAALGVHLSAYE 555 (589)
Q Consensus 476 ~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~~~~~~~~~~~~~~~~c~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 555 (589)
+.+++++..+|.++|.|||+||||+||++|||+++++.|||++|||||+|+++++|+|+|++++|||||++ ++|.++|+
T Consensus 475 ~~~~~~~~~~~~~~p~~~e~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~d~s~r~~-~~~~~~~~ 553 (553)
T 1ct9_A 475 QQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAV-GVHQSAYK 553 (553)
T ss_dssp HHHHTHHHHCCSSCCCSHHHHHHHHHHHHHCCCHHHHHHSCC--------------------------------------
T ss_pred HHHHhhhhhcCCCCCCchhHHHHHHHHHHHCCcHHHHhhCCCCCCcccccHHHhhhhhhhCcCCCCcchhh-hhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976 99988873
No 2
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=100.00 E-value=1.2e-80 Score=684.20 Aligned_cols=404 Identities=23% Similarity=0.322 Sum_probs=345.3
Q ss_pred hhcCCCCCceEEeCCEEEEEeeeeecCCCCCCCCeeecC----CcEEEEEEEEECChHHHHHHhcCCCCCCCChHHHHHH
Q 007799 29 KHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNED----KKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAH 104 (589)
Q Consensus 29 ~hRGpD~~g~~~~~~~~l~h~RLai~d~~~~~QP~~~~~----~~~~l~~NGeIyN~~eL~~~l~~~~~~t~sD~Evil~ 104 (589)
.+|||++.+.+...+ .-.||+.+.+ ++++++|||||||+.+||++|. +.|+|.||||+|++
T Consensus 40 ~~r~p~~~~~~~~~~--------------~~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~-~~f~t~sDtEvil~ 104 (513)
T 1jgt_A 40 PQGERSLAATLVHAP--------------SVAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVLP-AGPAPEGDAELVLR 104 (513)
T ss_dssp TTGGGSCEEEEEECT--------------TSCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSC-SSCCCSSHHHHHHH
T ss_pred ccCCCccccceeeCC--------------ccCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhC-CCCCCCCHHHHHHH
Confidence 468888877654322 1269987654 7899999999999999999995 89999999999999
Q ss_pred HHHHHhHHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCcccccccc----------------
Q 007799 105 LYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC---------------- 168 (589)
Q Consensus 105 ly~~~G~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~---------------- 168 (589)
+|++||.+++++|+|+|||++||.+ +++++||++|+|||||+.. ++.++||||+++|...+
T Consensus 105 l~~~~g~~~~~~l~G~fA~~i~d~~--~l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~ 181 (513)
T 1jgt_A 105 LLERYDLHAFRLVNGRFATVVRTGD--RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGL 181 (513)
T ss_dssp HHHHHGGGGGGTCCEEEEEEEEETT--EEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSC
T ss_pred HHHHHhHHhHhhcCeeEEEEEEECC--EEEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccc
Confidence 9999999999999999999999985 4999999999999999986 78999999999998765
Q ss_pred ccceeeCCccEEEeC--CCc--eeEeeCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHH
Q 007799 169 EHFEAFPPGHLYSSK--SGG--LKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASI 244 (589)
Q Consensus 169 ~~I~~lpPG~~~~~~--~~~--~~~y~~p~~~~~~~~~~~~~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaal 244 (589)
++|++|||||++.++ .++ .++||++.... ...+.++.+++++++|.+||++|+++|+|+|++||||+|||+|+++
T Consensus 182 ~~i~~l~pG~~l~i~~~~g~~~~~~yw~~~~~~-~~~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaal 260 (513)
T 1jgt_A 182 TGVYQVPAGAVMDIDLGSGTAVTHRTWTPGLSR-RILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAAC 260 (513)
T ss_dssp SSCEECCTTEEEEEETTTTEEEEEECCCCCCSC-BCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHH
T ss_pred cceEEcCCCcEEEEEcCCCCEEEEeecCCcccc-cCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHH
Confidence 899999999998876 554 57899876532 2223345678999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHH
Q 007799 245 TARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPM 324 (589)
Q Consensus 245 a~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~ 324 (589)
+++.. .+++|||+++++.+|..+|+++|+++|++|+++.++.+++.+.+++++++++++++....+.+++
T Consensus 261 a~~~~----------~~v~tfti~~~~~~E~~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~ 330 (513)
T 1jgt_A 261 AHRAA----------GELDTVSMGTDTSNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPL 330 (513)
T ss_dssp HHHHH----------SSCEEEEEECSSCCCHHHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHhC----------CCceEEEcCCCCCCHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHH
Confidence 99875 47999999999899999999999999999999999999999999999999888766555567788
Q ss_pred HHHHHHHHhcCCeEEEeCCcchhccccccccccCCChHHHHHHHHHHHHhhccccccccccccc----cCCceeecCCCC
Q 007799 325 FLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTS----AWGLEARVPFLD 400 (589)
Q Consensus 325 ~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~~l~~~dllr~dr~~~----a~gvE~R~PfLD 400 (589)
|++++.+ +.|++|+|||+||||+|+||.+| |....+.+| .+.+++.++++ ||++| ++|+|+|+||||
T Consensus 331 ~~l~~~a-~~g~~VvltG~GaDElfgGY~~~---~~~~~l~~e---~l~~l~~~~ll--Dr~sm~la~a~glE~R~PfLD 401 (513)
T 1jgt_A 331 TALYRAL-DGPERRILTGYGADIPLGGMHRE---DRLPALDTV---LAHDMATFDGL--NEMSPVLSTLAGHWTTHPYWD 401 (513)
T ss_dssp HHHHHHC-CSSCCEEECCTTTHHHHTTTCCC---SCCHHHHHH---HHHHHHHCTTC--CTTCTHHHHTTTCEEECGGGS
T ss_pred HHHHHHH-HcCCCEEEeCCChhhcccCcccc---CChhhcCHH---HHHHHhhccch--hhhhhhhhhhcCcceECCCCC
Confidence 8888877 67999999999999999999987 445556665 45567777888 99999 999999999999
Q ss_pred hHHHHHHhcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCCChhhHHHHHHHHH-HHhcChHHHH
Q 007799 401 KDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHA-EQHVTDKMVQ 479 (589)
Q Consensus 401 ~~lve~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~-~~~l~d~~l~ 479 (589)
++|||||++||+++|+.+ +.+|+|||+||++ +||++|+||+|++|+.|+++.|+ +++++ ++.++++.++
T Consensus 402 ~~lve~a~~lP~~~k~~~----~~~K~iLR~a~~~----~lP~~i~~R~K~gf~~p~~~~~~--l~~~~~~~~~~~~~~~ 471 (513)
T 1jgt_A 402 REVLDLLVSLEAGLKRRH----GRDKWVLRAAMAD----ALPAETVNRPKLGVHEGSGTTSS--FSRLLLDHGVAEDRVH 471 (513)
T ss_dssp HHHHHHHHHBCHHHHEET----TEETHHHHHHHTT----TSCHHHHHSCCC---------CH--HHHHHHHHCCCTTSHH
T ss_pred HHHHHHHHcCCHHHhcCC----CCCHHHHHHHHHh----hCCHHHHhCCcCCCCCChhHHHH--HHHHHHHhhcCHHHHH
Confidence 999999999999999976 3689999999999 99999999999999999998887 88898 8888887776
Q ss_pred h
Q 007799 480 N 480 (589)
Q Consensus 480 ~ 480 (589)
+
T Consensus 472 ~ 472 (513)
T 1jgt_A 472 E 472 (513)
T ss_dssp H
T ss_pred H
Confidence 5
No 3
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=100.00 E-value=7.5e-80 Score=676.89 Aligned_cols=424 Identities=22% Similarity=0.344 Sum_probs=355.3
Q ss_pred CCEEEEEeeeeecCCCCCCCCeeecCCcEEEEEEEEECChH---HHHHHhcCCCCCCCChHHHHHHHHHHHhHHHHhhcc
Q 007799 42 GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHE---ALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLD 118 (589)
Q Consensus 42 ~~~~l~h~RLai~d~~~~~QP~~~~~~~~~l~~NGeIyN~~---eL~~~l~~~~~~t~sD~Evil~ly~~~G~~~l~~l~ 118 (589)
+++++||+||+|.+ ..+.||+.+.+++++++ |||||+. +|+++|.| .|.|.||||+|+++|++||.+++++|+
T Consensus 26 ~~~~igh~R~~t~~-~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g-~f~s~sDtEvil~l~~~~g~~~l~~l~ 101 (503)
T 1q15_A 26 KGEALSNGYLFIEQ-NGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEG-EAYLANDAELLALLFTRLGANALALAE 101 (503)
T ss_dssp EEEEETTEEEEEET-TCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCG-GGGGCCHHHHHHHHHHHHCGGGGGGCC
T ss_pred CceeEeeeeEEEcC-CCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhC-CCCCCChHHHHHHHHHHHHHHHHHHcC
Confidence 45889999999974 57899999888888887 9999999 99999976 899999999999999999999999999
Q ss_pred cceEEEEEECCCCEEEEEEcCCCCceeEEEEecCce-----------------EEEEcCccccccc--------ccccee
Q 007799 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGS-----------------IWISSELKGLNDD--------CEHFEA 173 (589)
Q Consensus 119 G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~-----------------~~faSe~k~L~~~--------~~~I~~ 173 (589)
|+|||++||..++ ++++|||+|+|||||+.. ++. ++||||+++|... +++|++
T Consensus 102 G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~~~v~~ 179 (503)
T 1q15_A 102 GDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQR 179 (503)
T ss_dssp SSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSBTTEEE
T ss_pred EEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCcccCCeEE
Confidence 9999999999888 999999999999999986 566 9999999999886 899999
Q ss_pred eCCccEEEeCCCc------eeEeeCCCCCCC-CCCCCCCcHHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHH
Q 007799 174 FPPGHLYSSKSGG------LKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITA 246 (589)
Q Consensus 174 lpPG~~~~~~~~~------~~~y~~p~~~~~-~~~~~~~~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~ 246 (589)
|||||++.++.++ .++||++..... ...+.++.+++++++|.+||++|+.+|+|+|++||||+|||+|+++++
T Consensus 180 l~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~ 259 (503)
T 1q15_A 180 LKPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALAS 259 (503)
T ss_dssp CCSSEEEEEEECTTCCEEEEEEESCCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHT
T ss_pred ECCCeEEEEeCCCcccccceeeecCCcccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHH
Confidence 9999998775322 678998765321 122334567899999999999999999999999999999999999998
Q ss_pred HHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHH
Q 007799 247 RHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFL 326 (589)
Q Consensus 247 ~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~ 326 (589)
+.. .++++||+++++.+|..+|+++|+++|++|+++.++.+++.+.+++.+++.+.+++....+.+++|+
T Consensus 260 ~~~----------~~~~~~t~~~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~ 329 (503)
T 1q15_A 260 RHF----------KKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFN 329 (503)
T ss_dssp TTC----------SEEEEEEEEETTBCCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HhC----------CCcEEEEEeCCCccHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHH
Confidence 654 4799999999988999999999999999999999999999999999999998876555556788899
Q ss_pred HHHHHHhcCCeEEEeCCcchhcccccccc-ccCCChHHHHHHHHHHHHhhccccccccccccccCCceeecCCCChHHHH
Q 007799 327 MSRKIKSLGVKMVISGEGSDEIFGGYLYF-HKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFIN 405 (589)
Q Consensus 327 l~~~a~~~g~~vvLsG~GgDElfgGY~~~-~~~p~~~~~~~e~~~~l~~l~~~dllr~dr~~~a~gvE~R~PfLD~~lve 405 (589)
+++.+ +.|++|+|||+||||+|+||.+| ++.|+...+..|.++++. +++.|.||++|++|+|+|+||||++|||
T Consensus 330 l~~~a-~~~~~VvltG~GaDElf~GY~~~~~~~~~~~~l~~e~~~r~~----~~L~r~Dr~~ma~glE~R~PfLD~~lve 404 (503)
T 1q15_A 330 VYRQA-QGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTR----WTGEFATHGASCYGIDIRHPFWSHSLIS 404 (503)
T ss_dssp HHHHH-BTTBSEEECCTTHHHHHTTTSCTTCCCSCHHHHHHHHHHHHH----HHSTTCCHHHHHTTCEEECTTCCHHHHH
T ss_pred HHHHH-HCCCCEEEeCCChhhhccChHHHHHhcCCHHHHhHHHHHHHH----HhhhhhhHHHHHcCCCEECCCCCHHHHH
Confidence 99888 67899999999999999999988 456666666666665554 6788999999999999999999999999
Q ss_pred HHhcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCCChhhHHHHHHHHHHHhcChHHHHhcCccC
Q 007799 406 VAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIF 485 (589)
Q Consensus 406 ~a~slP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~ 485 (589)
||++||+++|+.++ .+|+|||+||+++ ++||++|+||+|++|+.|++..|+. .+. +.. +
T Consensus 405 ~a~~lP~~~k~~~~----~~K~iLR~a~~~~--~~lP~~i~~R~K~gf~~~~~~~~~~--~~~----~~~-----~---- 463 (503)
T 1q15_A 405 LCHALHPDYKIFDN----EVKNILREYADSL--QLLPKDIVWRKKIGIHEGSSVNQAF--ANV----LGS-----T---- 463 (503)
T ss_dssp HHHTBCGGGTEETT----EESHHHHHHHHHT--SCSCHHHHCC---------CHHHHH--HHH----HTS-----C----
T ss_pred HHHhCCHHHHhCCC----CcHHHHHHHHhcC--CcCCHHHhcCCCCCCCCCcchHHHH--HHH----hcc-----c----
Confidence 99999999999763 5899999999873 2699999999999999999876642 221 111 0
Q ss_pred CCCCcchHHHHHHHHHHHHhCCCC
Q 007799 486 PHNTPLTKEAYYYRMIFERFFPQN 509 (589)
Q Consensus 486 ~~~~~~~ke~~~~~~~f~~~~~~~ 509 (589)
..+ .++|+.|+| +||+++|+++
T Consensus 464 ~~~-~~~k~~~~y-~~~~~~~~~~ 485 (503)
T 1q15_A 464 VDN-YQTKSRFTY-RVYQAFLRGR 485 (503)
T ss_dssp TTC-HHHHHHHHH-HHHHHHHTTS
T ss_pred ccC-CCchhHHHH-HHHHHHcCCC
Confidence 112 478877777 6999999985
No 4
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=100.00 E-value=2e-36 Score=328.97 Aligned_cols=215 Identities=23% Similarity=0.376 Sum_probs=178.0
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe---------------------------CCEEEEEeeeeec
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~---------------------------~~~~l~h~RLai~ 54 (589)
|||+|+++.+ + ....+..|+.+|+|||||+.|++.. ++++|||+|++|.
T Consensus 1 CGI~G~~~~~-~---~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~R~at~ 76 (459)
T 1ao0_A 1 CGVFGIWGHE-E---APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATA 76 (459)
T ss_dssp CEEEEEESCT-B---HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEEECCC-
T ss_pred CEEEEEECCc-c---hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEEEEecCCC
Confidence 9999999764 1 2455678999999999999999875 4589999999999
Q ss_pred CCC--CCCCCeee---cCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHh--------HHHHhhccc
Q 007799 55 DPA--SGDQPLYN---EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (589)
Q Consensus 55 d~~--~~~QP~~~---~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G--------~~~l~~l~G 119 (589)
|.. .+.|||.. .+++++++|||+|||+.+||++| .|+.|++.||+|+|+++|.+|| .+++++|+|
T Consensus 77 g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G 156 (459)
T 1ao0_A 77 GGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKG 156 (459)
T ss_dssp ---CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCE
T ss_pred CCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcc
Confidence 963 58999987 56889999999999999999999 5899999999999999999987 789999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc-cccceeeCCccEEEeCCCc--eeEeeCCCCC
Q 007799 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG--LKRWYNPTWY 196 (589)
Q Consensus 120 ~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~~~--~~~y~~p~~~ 196 (589)
+|||++||. ++++++||++|+|||||+.. ++.++||||.++|... .++|+.|+||+++.++.++ ..+||++...
T Consensus 157 ~fa~~i~d~--~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~~~~~ 233 (459)
T 1ao0_A 157 AYAFLIMTE--TEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSMNINR 233 (459)
T ss_dssp EEEEEEECS--SEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCSSCCC
T ss_pred ceEEEEEeC--CEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCCCccc
Confidence 999999995 89999999999999999987 6789999999999874 6889999999999887654 4578875321
Q ss_pred --------CCCCCC---CCCcHHHHHHHHHHHHHhhhc
Q 007799 197 --------SEAIPS---TPYDPLVLRQAFENAVIKRLM 223 (589)
Q Consensus 197 --------~~~~~~---~~~~~~~lr~~l~~aV~~rl~ 223 (589)
....|. ....+.+.+..+.+.+.+.+.
T Consensus 234 ~~c~feyiyfarp~s~~~~~~v~~~r~~lg~~La~~~~ 271 (459)
T 1ao0_A 234 SICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESA 271 (459)
T ss_dssp CEEHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHC
T ss_pred cccceeeeeccCCcchhccHhHHHHHHHHHHHHHHhcc
Confidence 011222 234567888889888888663
No 5
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=100.00 E-value=7.8e-36 Score=297.56 Aligned_cols=179 Identities=32% Similarity=0.445 Sum_probs=159.0
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceE-Ee---------------------------CCEEEEEeeeee
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-QH---------------------------GDFYLAHQRLAI 53 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~-~~---------------------------~~~~l~h~RLai 53 (589)
|||+|+++.+.. ...+..|+++|+|||||+.|++ .. ++++|||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at 76 (240)
T 1xff_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (240)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCS
T ss_pred CcEEEEEcCcch----HHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEEEEeccC
Confidence 999999986532 2567889999999999999999 62 568999999999
Q ss_pred cCC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHHhH----------HHHhhccc
Q 007799 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDG 119 (589)
Q Consensus 54 ~d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~G~----------~~l~~l~G 119 (589)
.|. ..+.|||.+ ++++++|||||||+.+|+++| .|+.|.+.||+|+|+++|++++. +++++|+|
T Consensus 77 ~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G 154 (240)
T 1xff_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (240)
T ss_dssp SSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCE
T ss_pred CCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 985 468999987 689999999999999999999 58999999999999999999864 79999999
Q ss_pred ceEEEEEECC-CCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccccccceeeCCccEEEeCCCceeEe
Q 007799 120 MFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRW 190 (589)
Q Consensus 120 ~Fa~vi~D~~-~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~~~~y 190 (589)
+|||++||.+ .++++++||+ |||||+.. ++.++||||+++|.....++..||||+++.++.++++.|
T Consensus 155 ~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pG~~~~i~~~~~~~~ 222 (240)
T 1xff_A 155 AYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIF 222 (240)
T ss_dssp EEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSEEEECCTTCEEEECSSCEEEE
T ss_pred ceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCeEEEECCCEEEEEECCeEEEE
Confidence 9999999985 5899999998 99999986 678999999999998888899999999998876655443
No 6
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.98 E-value=1e-31 Score=301.83 Aligned_cols=175 Identities=33% Similarity=0.463 Sum_probs=157.0
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEe----------------------------CCEEEEEeeeee
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----------------------------GDFYLAHQRLAI 53 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~----------------------------~~~~l~h~RLai 53 (589)
|||+|+++.+.. ...+..|+++|+|||||+.|++.. ++++|||+||+|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at 76 (608)
T 2bpl_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (608)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCC
T ss_pred CeEEEEEcCCch----HHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCC
Confidence 999999986532 356788999999999999999965 458999999999
Q ss_pred cCC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cCCCCCCCChHHHHHHHHHHH---hH-------HHHhhccc
Q 007799 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY---GE-------NFVDMLDG 119 (589)
Q Consensus 54 ~d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~~~~~t~sD~Evil~ly~~~---G~-------~~l~~l~G 119 (589)
.|. ..+.||+.+ ++++++|||+|||+.+||++| .|+.|.+.||||+|+++|++| |. +++++|+|
T Consensus 77 ~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G 154 (608)
T 2bpl_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (608)
T ss_dssp SSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCS
T ss_pred CCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcC
Confidence 995 358999987 789999999999999999999 589999999999999999998 73 68999999
Q ss_pred ceEEEEEECCC-CEEEEEEcCCCCceeEEEEecCceEEEEcCccccccccccceeeCCccEEEeCCCc
Q 007799 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGG 186 (589)
Q Consensus 120 ~Fa~vi~D~~~-~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~~~~I~~lpPG~~~~~~~~~ 186 (589)
+|||++||..+ ++++++||+ +||||+.. ++.++||||+++|......+..|+||+++.++.++
T Consensus 155 ~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~~~~~l~~G~i~~i~~~~ 218 (608)
T 2bpl_A 155 AYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRS 218 (608)
T ss_dssp SEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCCEEEECCTTCEEEECSSC
T ss_pred ceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCCeEEEECCCeEEEEECCe
Confidence 99999999987 899999998 99999986 67899999999999888899999999998776544
No 7
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.98 E-value=1.5e-31 Score=293.53 Aligned_cols=178 Identities=22% Similarity=0.390 Sum_probs=152.0
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhhhcCCCCCceEEeC----------------------------CEEEEEeeeee
Q 007799 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLAI 53 (589)
Q Consensus 2 cGI~gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~----------------------------~~~l~h~RLai 53 (589)
|||+|+++.+.. ...+..|+..|+|||||+.|++..+ +++|||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT 76 (504)
T 1ecf_A 1 CGIVGIAGVMPV----NQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPT 76 (504)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCB
T ss_pred CEEEEEEcChhH----HHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCc
Confidence 999999986421 3467789999999999999999753 58999999999
Q ss_pred cCCC--CCCCCeeec-CCcEEEEEEEEECChHHHHHHh--c-CCCCCCCChHHHHHHHHHHH----hH------------
Q 007799 54 IDPA--SGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--T-NHKFRTGSDCDVIAHLYEEY----GE------------ 111 (589)
Q Consensus 54 ~d~~--~~~QP~~~~-~~~~~l~~NGeIyN~~eL~~~l--~-~~~~~t~sD~Evil~ly~~~----G~------------ 111 (589)
.|.. .+.|||... +++++++|||+|||+.+||++| . ++.|+|.||+|+|+++|.++ |.
T Consensus 77 ~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~ 156 (504)
T 1ecf_A 77 AGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAI 156 (504)
T ss_dssp TTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHH
T ss_pred CCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHH
Confidence 9963 689999864 3559999999999999999999 2 47899999999999999876 32
Q ss_pred -HHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEec--C--ceEEEEcCccccccc-cccceeeCCccEEEeCC
Q 007799 112 -NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL--D--GSIWISSELKGLNDD-CEHFEAFPPGHLYSSKS 184 (589)
Q Consensus 112 -~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~--~--g~~~faSe~k~L~~~-~~~I~~lpPG~~~~~~~ 184 (589)
+++++++|+|||++|+.. ++++++|||+|+|||||+... + +.++||||.++|... ++.|+.|+||+++.++.
T Consensus 157 ~~~~~~l~G~fa~v~~~~~-~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~ 234 (504)
T 1ecf_A 157 AATNRLIRGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITE 234 (504)
T ss_dssp HHHHHHCCEEEEEEEEETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEET
T ss_pred HHhhhhcCccceEEEEEcC-CeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeC
Confidence 579999999999999854 579999999999999999862 3 479999999999765 56799999999987763
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.93 E-value=1.3e-26 Score=234.39 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=110.2
Q ss_pred CEEEEEeeeeecCC--CCCCCCeeecCCcEEEEEEEEECChHHHHHHh--cC--CCC---CCCChHHHHHHHHHHHhH--
Q 007799 43 DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN--HKF---RTGSDCDVIAHLYEEYGE-- 111 (589)
Q Consensus 43 ~~~l~h~RLai~d~--~~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l--~~--~~~---~t~sD~Evil~ly~~~G~-- 111 (589)
.++|||+|+||.|. ..+.|||.. +++++++||+|||+.+||++| .+ +.| .+.||||+|+++|.++|.
T Consensus 82 ~~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~ 159 (274)
T 3mdn_A 82 GLFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEH 159 (274)
T ss_dssp EEEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTT
T ss_pred CEEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcC
Confidence 46899999999985 468999987 679999999999999999999 34 334 789999999999988774
Q ss_pred -------HHHhhcccc-----------eEEEEEECCCCEEEEEEcC-CCCceeEEEEecC--ceEEEEcCcccccccccc
Q 007799 112 -------NFVDMLDGM-----------FSFVLLDTRDNSFIVARDA-IGITSLYIGWGLD--GSIWISSELKGLNDDCEH 170 (589)
Q Consensus 112 -------~~l~~l~G~-----------Fa~vi~D~~~~~l~~aRD~-~G~~PLyy~~~~~--g~~~faSe~k~L~~~~~~ 170 (589)
+++++|+|+ |+|+++|. ++|+++||+ +|++||+|+...+ +.++||||. |......
T Consensus 160 ~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~~~ 235 (274)
T 3mdn_A 160 DPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDEGD 235 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CCSC
T ss_pred CHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCCce
Confidence 689999999 99999986 789999998 9999966665533 789999998 4434567
Q ss_pred ceeeCCccEEEeCCCceeEe
Q 007799 171 FEAFPPGHLYSSKSGGLKRW 190 (589)
Q Consensus 171 I~~lpPG~~~~~~~~~~~~y 190 (589)
++.|+||+++.++.++++.+
T Consensus 236 ~~~v~pGeiv~i~~~~v~~~ 255 (274)
T 3mdn_A 236 WTELRPGRMLTIGAEGAAER 255 (274)
T ss_dssp CEECCSSEEEEEETTEEEEE
T ss_pred EEEECcCEEEEEeCCeEEEE
Confidence 99999999998877665443
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.84 E-value=3.6e-22 Score=200.42 Aligned_cols=174 Identities=17% Similarity=0.145 Sum_probs=133.7
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhhhhcC------CCCCceEEe-----------------------------CCEE
Q 007799 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRG------PDWSGLYQH-----------------------------GDFY 45 (589)
Q Consensus 1 McGI~gi~~~~~~~~~~~~~~~~m~~~l~hRG------pD~~g~~~~-----------------------------~~~~ 45 (589)
||||+|+++... . . +...+..|+||| +|+.|+... ++++
T Consensus 1 MCgi~G~~~~~~-~-~----~~~gL~~Lq~RG~~~~~~~DgaGIa~~~~~~~~~~k~~g~v~~~~~~~~l~~~~l~g~~~ 74 (257)
T 1te5_A 1 MCELLGMSANVP-T-D----IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETV 74 (257)
T ss_dssp -CCEEEEEEEEE-E-E----CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEE
T ss_pred CCeEEEEEcCCC-c-c----HHHHHHHHHhccCCCCCCCCeEEEEEEeCCceEEEECCCccccchHHHHHhhCCccccEE
Confidence 999999997532 1 1 112457799999 799998642 1368
Q ss_pred EEEeeeeecCC--CCCCCCeeec--CCcEEEEEEEEECChHHHHHHhcCCCCCCCChHHHHHHHHHHHh-----------
Q 007799 46 LAHQRLAIIDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG----------- 110 (589)
Q Consensus 46 l~h~RLai~d~--~~~~QP~~~~--~~~~~l~~NGeIyN~~eL~~~l~~~~~~t~sD~Evil~ly~~~G----------- 110 (589)
+||+|+|+.+. ..+.|||... .++++++|||.|.|+.+ |.+ ++.|.+.||+|+|++++.+.-
T Consensus 75 IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~--~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~ 151 (257)
T 1te5_A 75 IGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPG--FYRPVGETDSEAAFCDLLNRVRRAFPEPVPVE 151 (257)
T ss_dssp EEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCC--SSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred EEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhc--cCCcccCCHHHHHHHHHHHHHHHhcCCCchHH
Confidence 99999999986 3589999864 56799999999999999 655 356999999999999987532
Q ss_pred --HHHHhhcc------cceEEEEEECCCCEEEEEEc----------CCCCceeEE-------EE---ecCceEEEEcCcc
Q 007799 111 --ENFVDMLD------GMFSFVLLDTRDNSFIVARD----------AIGITSLYI-------GW---GLDGSIWISSELK 162 (589)
Q Consensus 111 --~~~l~~l~------G~Fa~vi~D~~~~~l~~aRD----------~~G~~PLyy-------~~---~~~g~~~faSe~k 162 (589)
.+++.++. |.|+|++.|. ++|+++|| |+|.+||+. +. ..++.++||||.
T Consensus 152 a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~- 228 (257)
T 1te5_A 152 VLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP- 228 (257)
T ss_dssp HHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC-
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc-
Confidence 13555555 9999999997 78999999 999999965 20 113468999994
Q ss_pred ccccccccceeeCCccEEEeCCCcee
Q 007799 163 GLNDDCEHFEAFPPGHLYSSKSGGLK 188 (589)
Q Consensus 163 ~L~~~~~~I~~lpPG~~~~~~~~~~~ 188 (589)
|. ..+.++.++||+++.++.+.+.
T Consensus 229 -l~-~~~~wr~v~pGe~v~i~~~~~~ 252 (257)
T 1te5_A 229 -LT-DNENWTLQQSGEWVLWWGGEVL 252 (257)
T ss_dssp -SS-SSSSCEEECTTCEEEEETTEEE
T ss_pred -cC-CCCCeeEeCCCEEEEEECCEEE
Confidence 44 3578999999999988776543
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.55 E-value=1.9e-14 Score=169.78 Aligned_cols=160 Identities=19% Similarity=0.175 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhhhhcCCC----CCceEEe-----------------------------CCEEEEEeeeeecCCC--CCC
Q 007799 16 AKRVRVLELSRRLKHRGPD----WSGLYQH-----------------------------GDFYLAHQRLAIIDPA--SGD 60 (589)
Q Consensus 16 ~~~~~~~~m~~~l~hRGpD----~~g~~~~-----------------------------~~~~l~h~RLai~d~~--~~~ 60 (589)
.....+.-....++||+.+ +.++... +.++++|.|+|+.+.. .++
T Consensus 143 ~~~r~ly~~r~~le~~~~~~~~~~~yi~Sls~~~~vyKGmgl~~~v~~~y~dL~d~~~~g~~aigH~RySTnt~p~w~~A 222 (1479)
T 1ea0_A 143 QFELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLA 222 (1479)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGGGGSTTCCBSEEEEEECCCSCSCCCSTTS
T ss_pred hHHHHHHHHHHHHHHhhhhccCCcEEEEEecCcEEEEecCcCHHHhhhhhhhhcccccceeEEEeeecccCCCCCCcccC
Confidence 3455666778889999953 3343321 2589999999999863 478
Q ss_pred CCeeecCCcEEEEEEEEECChHHHHHHhc------------------C-CCCCCCChHHHH---HHHHHHHh--------
Q 007799 61 QPLYNEDKKIVVTVNGEIYNHEALRERLT------------------N-HKFRTGSDCDVI---AHLYEEYG-------- 110 (589)
Q Consensus 61 QP~~~~~~~~~l~~NGeIyN~~eL~~~l~------------------~-~~~~t~sD~Evi---l~ly~~~G-------- 110 (589)
|||. +|+|||||.|...+|+.+. + .-|.+.||+|+| ++++.+.|
T Consensus 223 QPf~------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g~~l~~A~~ 296 (1479)
T 1ea0_A 223 QPFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKM 296 (1479)
T ss_dssp SCCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CccE------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9995 3899999999999997641 1 237899999999 55443444
Q ss_pred ------------------------HHHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCcccccc
Q 007799 111 ------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND 166 (589)
Q Consensus 111 ------------------------~~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~ 166 (589)
..+++.++|.|++++-|. +.++++|||.|.|||.|+..+|+.+++|||..+|.-
T Consensus 297 ~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi 374 (1479)
T 1ea0_A 297 MLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKI 374 (1479)
T ss_dssp HHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCC
T ss_pred HhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccC
Confidence 123578999999999887 899999999999999999876778999999999965
Q ss_pred ccccc-e--eeCCccEEEeC
Q 007799 167 DCEHF-E--AFPPGHLYSSK 183 (589)
Q Consensus 167 ~~~~I-~--~lpPG~~~~~~ 183 (589)
....+ + ++.||+++.++
T Consensus 375 ~~a~~vrkg~l~PGemv~id 394 (1479)
T 1ea0_A 375 DETQVIEKGRLGPGEMIAVD 394 (1479)
T ss_dssp CGGGEEEEEECCTTCEEEEE
T ss_pred cchheeeccCCCCCeEEEEE
Confidence 44443 3 89999998765
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.51 E-value=1.2e-13 Score=163.29 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhhhhcCCCCCceEEe-----------------------------CCEEEEEeeeeecCCC--CCCCCee
Q 007799 16 AKRVRVLELSRRLKHRGPDWSGLYQH-----------------------------GDFYLAHQRLAIIDPA--SGDQPLY 64 (589)
Q Consensus 16 ~~~~~~~~m~~~l~hRGpD~~g~~~~-----------------------------~~~~l~h~RLai~d~~--~~~QP~~ 64 (589)
.....+....++++||+.++.++... +.++++|.|+|+.+.. .++|||.
T Consensus 143 ~~~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~ 222 (1520)
T 1ofd_A 143 ELDRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMR 222 (1520)
T ss_dssp HHHHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCS
T ss_pred hHHHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchh
Confidence 35566777889999999654444321 2589999999999864 4789995
Q ss_pred ecCCcEEEEEEEEECChHHHH------HH-----------h--cC-CCCCCCChHHHHHHHHH---HHhH----------
Q 007799 65 NEDKKIVVTVNGEIYNHEALR------ER-----------L--TN-HKFRTGSDCDVIAHLYE---EYGE---------- 111 (589)
Q Consensus 65 ~~~~~~~l~~NGeIyN~~eL~------~~-----------l--~~-~~~~t~sD~Evil~ly~---~~G~---------- 111 (589)
+|+|||||.|...+| +. | .+ .-|.+.||+|+|.++++ +.|.
T Consensus 223 ------~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~~A~~~li 296 (1520)
T 1ofd_A 223 ------LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILV 296 (1520)
T ss_dssp ------SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHS
T ss_pred ------eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHHHHHHHhC
Confidence 389999999999998 22 2 02 34889999999965444 4441
Q ss_pred ------------------------HHHhhcccceEEEEEECCCCEEEEEEcCCCCceeEEEEecCceEEEEcCccccccc
Q 007799 112 ------------------------NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167 (589)
Q Consensus 112 ------------------------~~l~~l~G~Fa~vi~D~~~~~l~~aRD~~G~~PLyy~~~~~g~~~faSe~k~L~~~ 167 (589)
.+++.++|.|++++-|. +.++++|||.|.|||.|+..+|+.+++|||..+|.-.
T Consensus 297 Peaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~ 374 (1520)
T 1ofd_A 297 PEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLP 374 (1520)
T ss_dssp CCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCC
T ss_pred cchhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCc
Confidence 12578899999999998 8999999999999999998766789999999998654
Q ss_pred ccc-ce--eeCCccEEEeC
Q 007799 168 CEH-FE--AFPPGHLYSSK 183 (589)
Q Consensus 168 ~~~-I~--~lpPG~~~~~~ 183 (589)
... ++ ++.||+.+.++
T Consensus 375 ~a~~vrkg~l~PGemv~id 393 (1520)
T 1ofd_A 375 EVDIVEKGRLAPGQMIAVD 393 (1520)
T ss_dssp GGGEEEEEECCTTCEEEEE
T ss_pred chheeeccCCCCCeEEEEE
Confidence 333 33 79999998764
No 12
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.09 E-value=1.1e-10 Score=116.91 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhC
Q 007799 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG 286 (589)
Q Consensus 207 ~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg 286 (589)
.+.+.+.+.+.+++. ...++.+.||||+||+++++++.+.... .+++++++....+.|...|+++|+.+|
T Consensus 6 ~~~~~~~l~~~i~~~--~~~~vvv~lSGGiDSs~~~~l~~~~~g~--------~~v~av~~~~~~~~~~~~a~~~a~~lg 75 (257)
T 2e18_A 6 YDKVIERILEFIREK--GNNGVVIGISGGVDSATVAYLATKALGK--------EKVLGLIMPYFENKDVEDAKLVAEKLG 75 (257)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCSSCSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CCCcEEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEEeCCCCchHHHHHHHHHHHhC
Confidence 466777777888776 5668999999999999999999887621 368888887653478999999999999
Q ss_pred CcceEEEeChhhhHHhHHHHHhhh-ccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 287 TVHHEFHFTVQDGIDAIEEVIYHV-ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 287 ~~h~~v~~~~~~~~~~l~~~i~~~-e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
++|+++.+++ ..+.+.+.+... +......+.+.+.+..+.+.+.+.|+.++.||+. ||.+.||.
T Consensus 76 i~~~~i~i~~--~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~-~e~~~Gy~ 140 (257)
T 2e18_A 76 IGYKVINIKP--IVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNR-SEFLTGYF 140 (257)
T ss_dssp CEEEECCCHH--HHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCH-HHHHHTCS
T ss_pred CCEEEEEChH--HHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCch-hHHhcCCe
Confidence 9998877653 222222211110 0000001112234556777788889999999984 67777874
No 13
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.05 E-value=5.1e-11 Score=134.74 Aligned_cols=305 Identities=15% Similarity=0.155 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHhhhccC--CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC--CcHHHHHHHHH
Q 007799 208 LVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVAD 283 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd--~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~D~~~A~~vA~ 283 (589)
+++.+.+...+++++... ..+.+.||||+||++.+.++++....-.. -..++.++++....+ .+...|+++|+
T Consensus 342 ~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~---~~~~v~~v~m~~~~~~~~~~~~A~~la~ 418 (680)
T 3sdb_A 342 YEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGR---PRSDILAFALPGFATGEHTKNNAIKLAR 418 (680)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTC---CGGGEEEEECCC--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCC---CCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 566777777787777544 46888999999999876666654311000 003677877754332 46788999999
Q ss_pred HhCCcceEEEeChhhhHHhHHHHHhh----hcc-Cccc--cccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccccc
Q 007799 284 YLGTVHHEFHFTVQDGIDAIEEVIYH----VET-YDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 356 (589)
Q Consensus 284 ~lg~~h~~v~~~~~~~~~~l~~~i~~----~e~-~~~~--~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~~ 356 (589)
.+|++|+++.+++ ..+...+.+.. .++ .+.+ .+.+.+-+-.+...+.+.|.-|+-|| ..+|++.||....
T Consensus 419 ~lgi~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTg-n~sE~~~Gy~T~~ 495 (680)
T 3sdb_A 419 ALGVTFSEIDIGD--TARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTG-DLSELALGWSTYG 495 (680)
T ss_dssp HHTCEEEECCCHH--HHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECC-CHHHHHHTCSCCS
T ss_pred HcCCCEEEEECHH--HHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCC-cHHhHhcCeeecc
Confidence 9999998887653 22222111111 000 1111 11122223334445556676555555 4567777884322
Q ss_pred --c-----CCChHHHHHHHHHHH-HhhccccccccccccccCCceeecCCCChHHHHHHhcCCccccccCCCCCccchHH
Q 007799 357 --K-----APNKEEFHRETCHKI-KALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWI 428 (589)
Q Consensus 357 --~-----~p~~~~~~~e~~~~l-~~l~~~dllr~dr~~~a~gvE~R~PfLD~~lve~a~slP~~~k~~~~~~~~~~K~i 428 (589)
. .|... +.+..++++ +.+.....+..+....-..+--|.|+-+..-++.-.....+..+.+ -..-..+
T Consensus 496 ~gD~~~~~~Pl~~-l~K~eVr~lar~l~~~~~~~~~~~~ip~~i~~k~Ps~eL~p~~~~~~q~de~~lg~---Y~~~D~~ 571 (680)
T 3sdb_A 496 VGDQMSHYNVNAG-VPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPELIPTGEEELQSSEAKVGP---FALQDFS 571 (680)
T ss_dssp SSTTCCSEETTTT-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC-------------CHHHHCC---HHHHHHH
T ss_pred CCCccccccccCC-CcHHHHHHHHHHHHhhccccccccCchHHHhcCCCCcCcCCCCCCCCCCchhhcCC---HHHHHHH
Confidence 1 24322 222222222 2221110000000001111334455544432211122233333311 1234788
Q ss_pred HHHhhccCCCCCCChhhhhcccCCCCCCChhhHHHHHHHHHHHhcChHHHHhcCccCCCCCcchHHHHHHHHHHHHhCC-
Q 007799 429 LRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFP- 507 (589)
Q Consensus 429 LR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~- 507 (589)
|+..++. .+.|++|+++-|..|.+.++..|.+.+.+..+...+++.+.. +.+..|+++|.
T Consensus 572 L~~~~~~---~~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~y~~~~i~~----------------~~~~f~~rf~~~ 632 (680)
T 3sdb_A 572 LFQVLRY---GFRPSKIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRH----------------WLQIFVQRFYSF 632 (680)
T ss_dssp HHHHHHH---CCCHHHHHHHHHHHHSCTTSSCCCSSCCGGGCCCCCHHHHHH----------------HHHHHHHHHHTT
T ss_pred HHHHHHC---CCCHHHHHHHHHHHhccccccccccccchhhhcCCCHHHHHH----------------HHHHHHHHHhhh
Confidence 8888874 189999999999999988776776544443333333333321 23344445665
Q ss_pred CCccccccCCCCccccccccccccchh--hccCCCCCchh
Q 007799 508 QNSARLTVPGGASVACSTAKAVEWDAE--WANNLDPSGRA 545 (589)
Q Consensus 508 ~~~~~~~~~~~~~~~c~~~~~~~w~~~--~~~~~~~~~~~ 545 (589)
++=-..+.|.||.|--+ ....|+ |+-..|.|+++
T Consensus 633 ~qfKr~~~p~gpkv~~~----~~lspr~d~r~psd~~~~~ 668 (680)
T 3sdb_A 633 SQFKRSALPNGPKVSHG----GALSPRGDWRAPSDMSARI 668 (680)
T ss_dssp SHHHHTTCCCCCCCCTT----CCCCTTTTCCCCSSCCCHH
T ss_pred ccCCcccCCCCCEeCCC----CCcCCCcccCCccccCHHH
Confidence 44445677888877211 123343 77788888874
No 14
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.02 E-value=3.5e-10 Score=113.94 Aligned_cols=132 Identities=17% Similarity=0.104 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC--CcHHHHHHHHHHh
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYL 285 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~D~~~A~~vA~~l 285 (589)
+.+.+.|.+.|.+. ...++.+.||||+||+++++++.+..+ .++.++++..... .|...|+++|+.+
T Consensus 10 ~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~~~l~~~~~~---------~~v~av~~~~~~~~~~e~~~a~~~a~~l 78 (268)
T 1xng_A 10 VYLCDFLEKEVQKR--GFKKVVYGLSGGLDSAVVGVLCQKVFK---------ENAHALLMPSSVSMPENKTDALNLCEKF 78 (268)
T ss_dssp HHHHHHHHHHHHHT--TCCCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEECCCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEccCcHHHHHHHHHHHHhCC---------CCEEEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 44555555555543 345799999999999999999988751 4688999876533 4789999999999
Q ss_pred CCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 286 g~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
|++|+++.+++ ..+.+.+.+...+......+.....+..+.+.+.+.|+.|+.||+ .||.|.||.
T Consensus 79 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-~~E~~~Gy~ 143 (268)
T 1xng_A 79 SIPYTEYSIAP--YDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSN-KSERMLGYG 143 (268)
T ss_dssp TCCEEECCCHH--HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHHHTCS
T ss_pred CCCEEEEeChH--HHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCc-HHHHhcCcc
Confidence 99998877654 222221111110000000111123345667778888999988875 688888884
No 15
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.01 E-value=8.8e-10 Score=107.12 Aligned_cols=118 Identities=19% Similarity=0.297 Sum_probs=74.8
Q ss_pred cCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHHhCCcceEEEeCh-hhhH
Q 007799 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTV-QDGI 300 (589)
Q Consensus 224 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~lg~~h~~v~~~~-~~~~ 300 (589)
++.+++++||||+||++++.++.+.. .++.++++.+.. ..|..+|+++|+.+|++|+.+.++. .+..
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~~~~----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~ 71 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWALKEF----------EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLA 71 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGS
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHcC----------CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhc
Confidence 35679999999999999999998753 468888886543 3588899999999999999998764 2211
Q ss_pred H-hH--HHHHh--h-hccCccccccchHHHH--HHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 301 D-AI--EEVIY--H-VETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 301 ~-~l--~~~i~--~-~e~~~~~~~~~~~~~~--~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
. .+ +.+.. . ...+.. ...+....| ++.+.+++.|+++++||+++|+. +||.
T Consensus 72 ~~~l~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~-~~~~ 130 (219)
T 3bl5_A 72 PNALTRNDIEIEVKDGELPST-FVPGRNLVFLSFASILAYQIGARHIITGVCETDF-SGYP 130 (219)
T ss_dssp TGGGC--------------CC-CCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-----CCG
T ss_pred ccccccccccccccccCCCCc-eeechHHHHHHHHHHHHHHcCCCEEEEecccccc-CCCC
Confidence 0 00 01100 0 011111 111222234 44677888899999999999996 5664
No 16
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.00 E-value=8.6e-10 Score=111.16 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccC-CcceeEEeeCCCCCcHHHHHHHHHH
Q 007799 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWG-TQLHSFCVGLEGSPDLKYAKEVADY 284 (589)
Q Consensus 206 ~~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~-~~l~tfsig~~~~~D~~~A~~vA~~ 284 (589)
.++.+...|.+.|+++..+ .+.+.||||+|||++++++++....-+.. -+ .++.++++.+....|...|+++|++
T Consensus 21 ~i~~~~~~L~d~v~~~g~~--~vvvgLSGGvDSsv~a~La~~a~~~lg~~--~~~~~v~av~~~~~~~~d~~~A~~va~~ 96 (271)
T 1kqp_A 21 EIEDRVNFLKQYVKKTGAK--GFVLGISGGQDSTLAGRLAQLAVESIREE--GGDAQFIAVRLPHGTQQDEDDAQLALKF 96 (271)
T ss_dssp HHHHHHHHHHHHHHHHTCC--EEEEECCSSHHHHHHHHHHHHHHHHHHHT--TCCCEEEEEECCSSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC--CEEEECCCCHHHHHHHHHHHHHHHHhccc--CCCceEEEEEeCCCCCCCHHHHHHHHHh
Confidence 3456777888888776544 45666999999999999988765210000 00 1455555443223589999999999
Q ss_pred hCC-cceEEEeChhhhHHhHHHHHhhh-c-cCcccccc---chHHHHHHHHHHHhcCCeEEEeCCcchhccccccc
Q 007799 285 LGT-VHHEFHFTVQDGIDAIEEVIYHV-E-TYDVTTIR---ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (589)
Q Consensus 285 lg~-~h~~v~~~~~~~~~~l~~~i~~~-e-~~~~~~~~---~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~ 354 (589)
+|+ +|+++.+++ ..+.+.+.+... + +....... +-+.+..+...|.+.|. +++++.+.||++.||..
T Consensus 97 lgi~~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~-lvl~tgn~~E~~~Gy~t 169 (271)
T 1kqp_A 97 IKPDKSWKFDIKS--TVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGL-LVLGTDHAAEAVTGFFT 169 (271)
T ss_dssp HCCSEEEECCCHH--HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTC-EEBCCCCHHHHTTTCSC
T ss_pred cCCCeEEEeccHH--HHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCC-EEEECccHHHhccCCcc
Confidence 999 888877653 234433333332 1 11111111 11234455566666665 56777778999999953
No 17
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.91 E-value=1.8e-09 Score=120.56 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHHHHhhhcc--CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC--CcHHHHHHH
Q 007799 206 DPLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEV 281 (589)
Q Consensus 206 ~~~~lr~~l~~aV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~D~~~A~~v 281 (589)
..+++.+.+...++.++.. ...+.+.||||+|||++|+++.+.+.. .++.++++....+ .|...|+++
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~--------~~v~~v~m~~~~~~~~~~~~A~~l 376 (590)
T 3n05_A 305 ADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA--------QNVYGVSMPSKYSSDHSKGDAAEL 376 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCSSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCc--------ccEEEEEECCCCCCHHHHHHHHHH
Confidence 4567777777777777753 346889999999999999999887521 4788999876543 488999999
Q ss_pred HHHhCCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccc
Q 007799 282 ADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (589)
Q Consensus 282 A~~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~ 354 (589)
|+++|++|+++.++.. .+.+...+. .+.+....+.+.+.+.++...+.+.|..|+.|| +.||++.||..
T Consensus 377 a~~lgi~~~~i~i~~~--~~~~~~~l~-~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~~Gy~t 445 (590)
T 3n05_A 377 ARRTGLNFRTVSIEPM--FDAYMASLG-LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELAVGYST 445 (590)
T ss_dssp HHHHTCEEEECCSHHH--HHHHHHHHC-CCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHHHTCCC
T ss_pred HHHcCCcEEEEEChHH--HHHHHHHhc-ccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHhcCchh
Confidence 9999999999876542 222221111 011100112223445566677778899999999 78899988854
No 18
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.83 E-value=9.7e-09 Score=98.98 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=74.4
Q ss_pred cCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhH
Q 007799 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (589)
Q Consensus 224 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l 303 (589)
.-.++++++|||+||++++.++.+. +.++.++++.+...+|..+++++|+.+|++|+.+.++....-..+
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll~~~----------g~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~ 74 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVILKKL----------GYNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDRKIVEKAA 74 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHHT----------TEEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCTHHHHHHH
T ss_pred cCCeEEEEEECcHHHHHHHHHHHHc----------CCCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECCHHHHHHHH
Confidence 3457999999999999999988764 257888888765545899999999999999999988764322222
Q ss_pred HHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhcc
Q 007799 304 EEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 304 ~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
...... ..+. ..+.....+++.+ +++ |+++++||+..|...
T Consensus 75 ~~~~~~-~~~~--~~c~~~~~~~l~~-~A~-g~~~i~tGh~~dD~~ 115 (203)
T 3k32_A 75 DMIIEH-KYPG--PAIQYVHKTVLEI-LAD-EYSILADGTRRDDRV 115 (203)
T ss_dssp HHHHHH-SSSH--HHHHHHHHHHHHH-HTT-TCSEEECCCCTTCCS
T ss_pred HHHHhc-CCCc--cHHHHHHHHHHHH-Hhc-CCCEEEECCCcccch
Confidence 222211 1111 0111122233333 333 899999999999876
No 19
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=98.75 E-value=1.1e-08 Score=101.72 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhhcc--CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHH
Q 007799 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVA 282 (589)
Q Consensus 207 ~~~lr~~l~~aV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA 282 (589)
.+++.+.+...++..+.. ...+.+.||||+||+++++++.+.. +.++.++++.... ..|...|+++|
T Consensus 6 ~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~---------g~~v~av~~~~~~~~~~~~~~a~~~a 76 (249)
T 3p52_A 6 WQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRAL---------KENVFALLMPTQISNKANLEDALRLC 76 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHH---------TTSEEEEECCSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHc---------CCcEEEEEecCCCCCHHHHHHHHHHH
Confidence 344555555555554433 4568999999999999999998875 3578888887643 35788999999
Q ss_pred HHhCCcceEEEeChhhhHHhHHHHHhhhccCcccc---ccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTT---IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 283 ~~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~---~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
+.+|++|+.+.+++ ..+.+ ...+.+.+... +..-.-+..+...+.+.|+.|+-||+ .||++-||.
T Consensus 77 ~~lgi~~~~v~i~~--~~~~~---~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn-~se~~~g~~ 144 (249)
T 3p52_A 77 ADLNLEYKIIEIQS--ILDAF---IKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSN-KSELLLGYG 144 (249)
T ss_dssp HHHTCEEEECCCHH--HHHHH---HTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHHHTCS
T ss_pred HHhCCCEEEEECcH--HHHHH---HHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCC-HHHHHccch
Confidence 99999998876643 22222 11111111111 11112233566677788887666665 455555664
No 20
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.74 E-value=1.9e-08 Score=99.92 Aligned_cols=132 Identities=16% Similarity=0.197 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHH
Q 007799 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADY 284 (589)
Q Consensus 207 ~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~ 284 (589)
.+.+.+.|.+.|++.- ...+.+.||||+||+++++++.+... ..+ ++++.... ..|...|+++|+.
T Consensus 13 ~~~l~~~l~~~v~~~~--~~~vvv~lSGGiDSsv~a~l~~~~~~---------~~~-av~~~~~~~~~~~~~~a~~~a~~ 80 (249)
T 3fiu_A 13 SQKLVNWLSDSCMNYP--AEGFVIGLSGGIDSAVAASLAVKTGL---------PTT-ALILPSDNNQHQDMQDALELIEM 80 (249)
T ss_dssp HHHHHHHHHHHHHTTT--CSEEEEECCSSHHHHHHHHHHHHTTS---------CEE-EEECCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEEecCcHHHHHHHHHHHHhCC---------CCE-EEEecCCCCCHHHHHHHHHHHHH
Confidence 4566666777776542 35688999999999999999987652 234 77776542 2478899999999
Q ss_pred hCCcceEEEeChhhhHHhHHHHHh-hhc---cCcccccc---chHHHHHHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 285 LGTVHHEFHFTVQDGIDAIEEVIY-HVE---TYDVTTIR---ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 285 lg~~h~~v~~~~~~~~~~l~~~i~-~~e---~~~~~~~~---~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
+|++|+.+.+++ ..+.+.+.+. .++ ++...... .-+-+..+...|.+.|+.++-||+ .||.+.||.
T Consensus 81 lgi~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn-~sE~~~G~~ 153 (249)
T 3fiu_A 81 LNIEHYTISIQP--AYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDN-ACEWYMGYF 153 (249)
T ss_dssp HTCEEEECCCHH--HHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHTCS
T ss_pred hCCCEEEEEChH--HHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCC-HHHHhcCch
Confidence 999998887653 2233222111 101 11100000 112234566677788999999995 568877774
No 21
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.66 E-value=3.2e-08 Score=99.74 Aligned_cols=125 Identities=11% Similarity=0.061 Sum_probs=72.5
Q ss_pred CceEEeecCCcchHHHHHHHHHHhccccccc-ccCCcceeEEeeCCCCCcHHHHHHHHHHhCC-cceEEEeChhhhHHhH
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAAR-QWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDAI 303 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~-~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~-~h~~v~~~~~~~~~~l 303 (589)
..+.+.||||+|||++++++++....-+... .-+.++.++++.+....|...|+++|+++|+ +|+++.+++ ..+.+
T Consensus 41 ~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~dA~~va~~lgi~~~~~i~i~~--~~~~~ 118 (275)
T 1wxi_A 41 KSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQPDRVLTVNIKG--AVLAS 118 (275)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHHHHHHHHHHHCCSEEEECCCHH--HHHHH
T ss_pred CCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHHHHHHHHHHcCCCeEEEEecHH--HHHHH
Confidence 3678889999999999999887652100000 0012677777765434589999999999999 888877653 23333
Q ss_pred HHHHhhh-ccCccccccc---hHHHHHHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 304 EEVIYHV-ETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 304 ~~~i~~~-e~~~~~~~~~---~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
.+.+... .++......+ -+-+..+...|.+.|..|+-|| ..+|++.||.
T Consensus 119 ~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTg-n~~E~~~Gy~ 171 (275)
T 1wxi_A 119 EQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTD-HAAEAITGFF 171 (275)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCC-CHHHHTTTCS
T ss_pred HHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECc-cHHHHccCcc
Confidence 2222221 1111111111 1123334455666776665444 5678888884
No 22
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.66 E-value=8.5e-08 Score=94.16 Aligned_cols=116 Identities=19% Similarity=0.292 Sum_probs=75.3
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC--CcHHHHHHHHHHhCCc-ceEEEeCh-hhhHH-
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTV-HHEFHFTV-QDGID- 301 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~D~~~A~~vA~~lg~~-h~~v~~~~-~~~~~- 301 (589)
++.++||||+||+++++++.+.. .++.++++.+... .|...|+++|+++|++ |+.+.++. +++..
T Consensus 4 kvvv~lSGG~DS~~~l~ll~~~~----------~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~~ 73 (232)
T 2pg3_A 4 RAVVVFSGGQDSTTCLIQALQDY----------DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELATS 73 (232)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSHH
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhhh
Confidence 58999999999999999998754 4677888765432 5888999999999999 99998872 32221
Q ss_pred hHHHH---H----hhhccCccccccchHHHH--HHHHHHHhcCCeEEEeCCcchhcccccc
Q 007799 302 AIEEV---I----YHVETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (589)
Q Consensus 302 ~l~~~---i----~~~e~~~~~~~~~~~~~~--~l~~~a~~~g~~vvLsG~GgDElfgGY~ 353 (589)
.+.+. + +..+....+.+..-...| ++.+.+.+.|++++++|+.+|+..+ |+
T Consensus 74 ~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~-~~ 133 (232)
T 2pg3_A 74 SLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSG-YP 133 (232)
T ss_dssp HHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSC-CG
T ss_pred hcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccCC-CC
Confidence 11110 0 001111111122212222 2356777889999999999999763 53
No 23
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.51 E-value=1.8e-07 Score=95.82 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHH-HHHH
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VADY 284 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~-vA~~ 284 (589)
+.+.+...+.++..+. +.++.+.||||+||+++++++.+.. +.++.++++... ...|...+++ +++.
T Consensus 4 ~~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~---------g~~v~av~vd~g~~~~~e~~~~~~~~a~~ 73 (308)
T 2dpl_A 4 GRFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAI---------GDRLHAVFVNTGFLRKGEPEFVVKTFRDE 73 (308)
T ss_dssp HHHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCCCTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhh---------CCCEEEEEEcCCCCChHHHHHHHHHHHHH
Confidence 3444455555666554 4579999999999999999998874 246888887543 2357778887 6678
Q ss_pred hCCcceEEEeChhhhHHhHHHHHhhhccCcc-ccccchHHHHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 285 lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~-~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
+|++|+.+.++.. +.+.+. ....+.. ..+........+.+.+++.|++.+++|+..|.+
T Consensus 74 lgi~~~vv~~~~~-f~~~l~----~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~ 133 (308)
T 2dpl_A 74 FGMNLHYVDAQDR-FFSALK----GVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDW 133 (308)
T ss_dssp TCCEEEEEECHHH-HHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--
T ss_pred cCCcEEEEECCHH-HHHhhh----CCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccc
Confidence 9999999887532 122111 1100100 000011122345667778899999999988754
No 24
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.49 E-value=5.1e-07 Score=95.88 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=74.1
Q ss_pred cCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCCc-ceEEEeChhhhHH-
Q 007799 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV-HHEFHFTVQDGID- 301 (589)
Q Consensus 224 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~-h~~v~~~~~~~~~- 301 (589)
+..++++++|||+||++++.++.+.. ..+.++++.+....|...|+++|+.+|++ |+.+.++ +++.+
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~G----------~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~-~ef~~~ 72 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQG----------YDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS-REFVEE 72 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHTT----------EEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHH
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEeCh-HHHHHH
Confidence 34579999999999999999987642 57889998776557999999999999998 6666664 33332
Q ss_pred hHHHHHhhhcc----Cccc-cccchHHHHHHHHHHHhcCCeEEEeCCcc
Q 007799 302 AIEEVIYHVET----YDVT-TIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (589)
Q Consensus 302 ~l~~~i~~~e~----~~~~-~~~~~~~~~~l~~~a~~~g~~vvLsG~Gg 345 (589)
.+...+..... +... .......+..+.+.+++.|+.++++|+.+
T Consensus 73 ~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~ 121 (413)
T 2nz2_A 73 FIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 121 (413)
T ss_dssp THHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred HHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 22222221111 1110 00001123345677788899999999987
No 25
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.44 E-value=8.6e-07 Score=93.87 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=73.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCC-cceEEEeChhhhHHh-HH
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-IE 304 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~-~h~~v~~~~~~~~~~-l~ 304 (589)
++.+++|||+|||+++.++.+.. +..+.++++......|...++++|+.+|+ +++.+.+.. ++.+. ..
T Consensus 2 kVvva~SGG~DSsvll~ll~~~~---------g~~V~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~~-ef~~~~~~ 71 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETY---------RAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKE-EFVRDFVF 71 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHH---------TCEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECHH-HHHHHTHH
T ss_pred cEEEEEeChHHHHHHHHHHHHhh---------CCcEEEEEEeCCCHHHHHHHHHHHHHhCCCeEEEEeCcH-HHHHHhhH
Confidence 57899999999999999998763 25788898876545789999999999999 677777642 23221 11
Q ss_pred HHHhhhcc----Cccccc-cchHHHHHHHHHHHhcCCeEEEeCCcch
Q 007799 305 EVIYHVET----YDVTTI-RASTPMFLMSRKIKSLGVKMVISGEGSD 346 (589)
Q Consensus 305 ~~i~~~e~----~~~~~~-~~~~~~~~l~~~a~~~g~~vvLsG~GgD 346 (589)
..+..... +...+. ........+.+.+++.|++++++|+.+|
T Consensus 72 ~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 72 PMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 22221111 111110 0111134566778888999999999986
No 26
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.43 E-value=3.3e-07 Score=96.48 Aligned_cols=115 Identities=18% Similarity=0.097 Sum_probs=76.1
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC----------CCcHHHHHHHHHHhCCcceEEEe
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----------SPDLKYAKEVADYLGTVHHEFHF 294 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~----------~~D~~~A~~vA~~lg~~h~~v~~ 294 (589)
..++.+.+|||+||++++.++.+.. .++.++++.... ..|...|+++|+.+|++|+.+.+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~ 78 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQG----------YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNF 78 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHcC----------CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3479999999999999999998753 577777775421 13678999999999999999988
Q ss_pred ChhhhHHhHHHHHh---hhccCccccccchHH-HHHHHHHHHhcCCeEEEeCCcchhcc
Q 007799 295 TVQDGIDAIEEVIY---HVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 295 ~~~~~~~~l~~~i~---~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
+.+..-..+...+. .-.++++...++... +..+.+.+.+.|+..+.||+.+|...
T Consensus 79 ~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~ 137 (376)
T 2hma_A 79 EKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVAR 137 (376)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhh
Confidence 64321111111111 112333221111111 22456778889999999999998865
No 27
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.41 E-value=9.7e-07 Score=93.28 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=73.5
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHhCC-cceEEEeChhhhHHh-H
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-I 303 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~-~h~~v~~~~~~~~~~-l 303 (589)
.++.+++|||+|||++++++.+.. ..+.++++......|+..|+++|+.+|+ +|+.+.+.. ++.+. +
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~G----------~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvDl~e-ef~~~v~ 83 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEKG----------FDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLRR-EFVTDYI 83 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECHH-HHHHHTH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCC----------CeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEecHH-HHHHhhh
Confidence 458999999999999999997653 6788998876555799999999999999 888888753 33322 2
Q ss_pred HHHHhhh----ccCccccc-cchHHHHHHHHHHHhcCCeEEEeCCcc
Q 007799 304 EEVIYHV----ETYDVTTI-RASTPMFLMSRKIKSLGVKMVISGEGS 345 (589)
Q Consensus 304 ~~~i~~~----e~~~~~~~-~~~~~~~~l~~~a~~~g~~vvLsG~Gg 345 (589)
...+... ..|..++. ......-.+.+.|.+.|+..+.+|.-+
T Consensus 84 ~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~ 130 (421)
T 1vl2_A 84 FTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATG 130 (421)
T ss_dssp HHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred hHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCee
Confidence 2222211 11221111 111112235567788899999999876
No 28
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.39 E-value=1.3e-06 Score=89.94 Aligned_cols=126 Identities=10% Similarity=0.056 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhh--hccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCc-ceeEEeeCCC----CCcHHHHHH
Q 007799 208 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQ-LHSFCVGLEG----SPDLKYAKE 280 (589)
Q Consensus 208 ~~lr~~l~~aV~~r--l~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~-l~tfsig~~~----~~D~~~A~~ 280 (589)
..+.+.+.+++++. +....++.+.+|||.||++++.++.+..+. ++.+ +.++++...- ..|..++++
T Consensus 5 ~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~------~g~~~v~av~vd~g~r~~s~~~~~~v~~ 78 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY------FSLKEVALAHFNHMLRESAERDEEFCKE 78 (317)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT------TTCSEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH------cCCCEEEEEEEECCCCcccHHHHHHHHH
Confidence 35667777777765 456678999999999999999998875321 1345 7777775432 136788999
Q ss_pred HHHHhCCcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHH-HHHHHHHhcCCeEEEeCCcchhc
Q 007799 281 VADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 281 vA~~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
+|+.+|++++.+.++..++.+. . ..+. ...+....| .+.+.+++.|+.++++|+-+|..
T Consensus 79 ~a~~lgi~~~v~~~~~~~~~~~------~--~~~~-e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~ 138 (317)
T 1wy5_A 79 FAKERNMKIFVGKEDVRAFAKE------N--RMSL-EEAGRFLRYKFLKEILESEGFDCIATAHHLNDL 138 (317)
T ss_dssp HHHHHTCCEEEEECCHHHHHHH------T--TCCH-HHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHH
T ss_pred HHHHcCCcEEEEEEechhhhcc------C--CCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHH
Confidence 9999999999998875432111 0 0010 000111233 45667778899999999998864
No 29
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.31 E-value=7.2e-07 Score=89.76 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccc-cccCCcceeEEeeCCCCCcHHHHHHHHHHhCC-
Q 007799 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAA-RQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT- 287 (589)
Q Consensus 210 lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~-~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~- 287 (589)
+.+-|.+.|++. ....+.+.||||+||+++++++++....-+.. ...+.++.++++.+....|...|+++|+.+|.
T Consensus 27 ~v~~L~d~l~~~--g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~~~~~~A~~~a~~lgi~ 104 (279)
T 3q4g_A 27 RVAFIKRKLTEA--RYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQKDEDEAQLALSFIRPT 104 (279)
T ss_dssp HHHHHHHHHHHH--TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSCSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHc--CCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCChHHHHHHHHHHHHhCCC
Confidence 333444444432 22457888999999999999976543110000 00012566666655444578999999999999
Q ss_pred cceEEEeChhhhHHhHHH-HHhhhc---------cCccc---cccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccc
Q 007799 288 VHHEFHFTVQDGIDAIEE-VIYHVE---------TYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (589)
Q Consensus 288 ~h~~v~~~~~~~~~~l~~-~i~~~e---------~~~~~---~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~ 354 (589)
+|+++.+++ ..+.+.. ++..+. +.... .+.+-+-|-.+...|.+.|.-|+=||+ .+|++.||..
T Consensus 105 ~~~~i~i~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTgn-~sE~~~Gy~T 181 (279)
T 3q4g_A 105 HSVSVNIKA--GVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTDH-SAENITGFYT 181 (279)
T ss_dssp EEEECCCHH--HHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHTCSC
T ss_pred eEEEEECHH--HHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCcc-HHhhhccchh
Confidence 788876643 2332221 000110 11111 111223344455566667764554554 4567778754
No 30
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.26 E-value=1.8e-06 Score=90.86 Aligned_cols=113 Identities=22% Similarity=0.214 Sum_probs=73.6
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC----------CCcHHHHHHHHHHhCCcceEEEe
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----------SPDLKYAKEVADYLGTVHHEFHF 294 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~----------~~D~~~A~~vA~~lg~~h~~v~~ 294 (589)
..++.+.+|||+||++++.++.+. +..+.++++.... ..|...|+++|+.+|++|+.+.+
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~~----------G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~ 86 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQQ----------GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNF 86 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHTT----------CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHc----------CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 456899999999999999998764 2578888875321 13678999999999999999987
Q ss_pred ChhhhHHh-HHHHHh---hhccCccccccchHH-HHHHHHHHHh-cCCeEEEeCCcchhc
Q 007799 295 TVQDGIDA-IEEVIY---HVETYDVTTIRASTP-MFLMSRKIKS-LGVKMVISGEGSDEI 348 (589)
Q Consensus 295 ~~~~~~~~-l~~~i~---~~e~~~~~~~~~~~~-~~~l~~~a~~-~g~~vvLsG~GgDEl 348 (589)
+.+ +.+. +...+. .-.++++...++... +-.+.+.+.+ .|+..+.||+-+|..
T Consensus 87 ~~~-f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~ 145 (380)
T 2der_A 87 AAE-YWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRA 145 (380)
T ss_dssp HHH-HHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEE
T ss_pred cHH-HHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccc
Confidence 642 2221 111111 112333221111111 1234566677 899999999998864
No 31
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.19 E-value=2.9e-06 Score=90.58 Aligned_cols=113 Identities=20% Similarity=0.140 Sum_probs=74.4
Q ss_pred hhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCC--CCcHHHHHHHHHHhCC-cceEEEeCh
Q 007799 220 KRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTV 296 (589)
Q Consensus 220 ~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~D~~~A~~vA~~lg~-~h~~v~~~~ 296 (589)
..+....+|.+++|||+|||+++.++.+.. ..+.++++.... ..|...|+++|+.+|+ +|+.+.+.
T Consensus 5 ~~l~~~~KVvVA~SGGlDSSvll~~L~e~G----------~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~- 73 (455)
T 1k92_A 5 KHLPVGQRIGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCR- 73 (455)
T ss_dssp CSCCTTSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECH-
T ss_pred hhhcCCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeCh-
Confidence 345556789999999999999999987642 578888876543 3589999999999999 78888875
Q ss_pred hhhHHhHHHHHhhhcc--------Cccccc--cchHHHHHHHHHHHhcCCeEEEeCCc
Q 007799 297 QDGIDAIEEVIYHVET--------YDVTTI--RASTPMFLMSRKIKSLGVKMVISGEG 344 (589)
Q Consensus 297 ~~~~~~l~~~i~~~e~--------~~~~~~--~~~~~~~~l~~~a~~~g~~vvLsG~G 344 (589)
+++.+.+-..+..... |...+. |. ...-.+.+.|++.|++.+.+|.-
T Consensus 74 eef~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp-~i~~~l~e~A~e~Gad~IAtGht 130 (455)
T 1k92_A 74 KQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRA-VTGTMLVAAMKEDGVNIWGDGST 130 (455)
T ss_dssp HHHHHHHHHHHHHTCCCCEETTEECCCHHHHHHH-HHHHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHHHhHHHHHcCCcccccCceecccCCcchHH-HHHHHHHHHHHHcCCCEEEECCc
Confidence 3333221122221111 111110 11 11124567778889999999993
No 32
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.03 E-value=8.7e-06 Score=89.44 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHH-HHH
Q 007799 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VAD 283 (589)
Q Consensus 207 ~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~-vA~ 283 (589)
.+.+.+.+.+.++..+.. .++.+.||||+||+++++++.+.. +.++.++++... ...|...+.+ +|+
T Consensus 210 ~~~~~~~~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a~---------G~~v~av~v~~g~~~~~e~~~~~~~la~ 279 (525)
T 1gpm_A 210 PAKIIDDAVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRAI---------GKNLTCVFVDNGLLRLNEAEQVLDMFGD 279 (525)
T ss_dssp HHHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCSCTTHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHHh---------CCCEEEEEEeCCCCCchHHHHHHHHHHH
Confidence 345555556666666644 689999999999999999998874 247888887543 2357777755 899
Q ss_pred HhCCcceEEEeChhhhHHhHHHHHhhhccCcc-ccccchHHHHHHHHHHHhc-CCeEEEeCCcch
Q 007799 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSL-GVKMVISGEGSD 346 (589)
Q Consensus 284 ~lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~-~~~~~~~~~~~l~~~a~~~-g~~vvLsG~GgD 346 (589)
++|++|+.+.++. .+.+.+.. ...+.. ..+........+.+.+++. |++.+++|.-.|
T Consensus 280 ~lgi~~~~v~~~~-~f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~ 339 (525)
T 1gpm_A 280 HFGLNIVHVPAED-RFLSALAG----ENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYP 339 (525)
T ss_dssp TTCCCEEEEECHH-HHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHH
T ss_pred HhCCcEEEEeccH-HHHHhhcC----CCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCc
Confidence 9999999988754 22222211 111100 0000011122345567777 899999998543
No 33
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.01 E-value=1.7e-05 Score=89.02 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhhcc--CCceEEeecCCcchHHHHHHH-------HHHhcccccccc-------cCC----------
Q 007799 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASIT-------ARHLAGTKAARQ-------WGT---------- 260 (589)
Q Consensus 207 ~~~lr~~l~~aV~~rl~s--d~pvgv~LSGGLDSS~Iaala-------~~~~~~~~~~~~-------~~~---------- 260 (589)
.+++...+...++.+++. ...+.+.||||+|||++|+++ .+.+...+.... .-.
T Consensus 283 ~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 362 (634)
T 3ilv_A 283 EFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQ 362 (634)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccc
Confidence 456666666667666643 346888999999999999983 333321100000 000
Q ss_pred -------cceeEEeeCCCC--CcHHHHHHHHHHhCCcceEEEeCh
Q 007799 261 -------QLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFTV 296 (589)
Q Consensus 261 -------~l~tfsig~~~~--~D~~~A~~vA~~lg~~h~~v~~~~ 296 (589)
-++++.++..++ .+...|+++|+.+|++|+++.+.+
T Consensus 363 ~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~ 407 (634)
T 3ilv_A 363 AKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDE 407 (634)
T ss_dssp HHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred hhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHH
Confidence 056777665544 367789999999999999988753
No 34
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=97.99 E-value=5.2e-06 Score=83.61 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=74.6
Q ss_pred HHHHHHHHhhhcc--CCceEEeecCCcchHHHHHHHHHHh---cccccccccCC--cceeEEeeCCCCCcHHHHHHHHHH
Q 007799 212 QAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHL---AGTKAARQWGT--QLHSFCVGLEGSPDLKYAKEVADY 284 (589)
Q Consensus 212 ~~l~~aV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~---~~~~~~~~~~~--~l~tfsig~~~~~D~~~A~~vA~~ 284 (589)
+.+...++.++.. -..+.+.||||+||+++++++++.. ... +. .+.+++..+....|...|+++|+.
T Consensus 31 ~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~------~~~~~viav~~p~~~~~~~~dA~~~a~~ 104 (285)
T 3dpi_A 31 ERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRAS------GYDARFVAMRLPYGAQHDEADARRALAF 104 (285)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHT------TCCCEEEEEECCSCC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhccc------CcccEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3333556666543 3468899999999999987766532 211 11 345555544333577889999999
Q ss_pred hC-CcceEEEeChhhhHHhHHHHHhhh-ccC------c--cccccchHHHHHHHHHHHhcCCeEEEeCCcchhccccccc
Q 007799 285 LG-TVHHEFHFTVQDGIDAIEEVIYHV-ETY------D--VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (589)
Q Consensus 285 lg-~~h~~v~~~~~~~~~~l~~~i~~~-e~~------~--~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~ 354 (589)
+| ++|+++.+++ ..+.+.+.+... .++ + ...+.+-+-|-.+...+.+.|.-|+-||+-+ |++-||..
T Consensus 105 lg~i~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~s-E~~~Gy~T 181 (285)
T 3dpi_A 105 VRADETLTVDVKP--AADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAA-ESVMGFFT 181 (285)
T ss_dssp HCCSEEEECCCHH--HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHH-HHHHHHHH
T ss_pred cCCCcEEEEEChH--HHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccHH-hhhCCccc
Confidence 99 6888877643 233322222110 011 0 0111222334455666777887666666655 56667643
No 35
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=97.97 E-value=2.6e-05 Score=84.39 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=78.1
Q ss_pred HHHHHHhh--hccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCC-----CcHHHHHHHHHHhC
Q 007799 214 FENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYAKEVADYLG 286 (589)
Q Consensus 214 l~~aV~~r--l~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-----~D~~~A~~vA~~lg 286 (589)
+.+.+++. +....++.+.+|||.||++++.++.+...+. +..+.++++...-. .|..+++++|+.+|
T Consensus 5 v~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~------~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg 78 (464)
T 3a2k_A 5 VRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW------KLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR 78 (464)
T ss_dssp HHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT------TCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc------CCeEEEEEEECCCCccccHHHHHHHHHHHHHcC
Confidence 34444443 3456789999999999999999998754321 35677777754321 36788999999999
Q ss_pred CcceEEEeChhhhHHhHHHHHhhhccCccccccchHHHH-HHHHHHHhcCCeEEEeCCcchhc
Q 007799 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 287 ~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
++++.+.++...+.+. ...... ..+....| ++.+.+++.|+.++++|+-+|..
T Consensus 79 i~~~v~~~~~~~~~~~--------~~~~~e-~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~ 132 (464)
T 3a2k_A 79 ILCETAQIDVPAFQRS--------AGLGAQ-EAARICRYRFFAELMEKHQAGYVAVGHHGDDQ 132 (464)
T ss_dssp CEEEEEECCCHHHHTT--------TTCCSH-HHHHHHHHHHHHHHHHTTTCCEEECCCCHHHH
T ss_pred CcEEEEEechhhhhhc--------cCCCHH-HHHHHHHHHHHHHHHHHcCcCEEEEeCChHHH
Confidence 9999988865432110 000100 00111222 45566778899999999998853
No 36
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=97.97 E-value=1.4e-05 Score=87.84 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEee--CCCCCcHHHHHH-HHHH
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKE-VADY 284 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~D~~~A~~-vA~~ 284 (589)
+.+.+.+.+.++..+.. .++.+.||||+||+++++++.+.. +.++.++++. +....|...+.+ +|+.
T Consensus 214 ~~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~---------G~~v~av~vd~g~~~~~e~~~~~~~~a~~ 283 (527)
T 3tqi_A 214 KHIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAI---------GDQLVCVLVDTGLLRLNEVDEVLNVFQKH 283 (527)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHH---------GGGEEEEEECCSCSCTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHh---------CCeEEEEEeccCCCChhHHHHHHHHHHHH
Confidence 34444444556665544 679999999999999999998874 2468888874 333467777765 9999
Q ss_pred hCCcceEEEeChhhhHHhHHHHHhhhccCccccc-cch--HHHH-HHHHHHHhcCCeEEEeCCcchhcc
Q 007799 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTI-RAS--TPMF-LMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 285 lg~~h~~v~~~~~~~~~~l~~~i~~~e~~~~~~~-~~~--~~~~-~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
+|++|+.+.++.. +.+. ++....+.. +.. ..++ .+.+.+++.|++.+++|+-.|.+.
T Consensus 284 lgi~~~vv~~~~~-~~~~-------l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~ 344 (527)
T 3tqi_A 284 LGAKVICVDAKDR-FMKA-------LKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVI 344 (527)
T ss_dssp SCCEEEEECCHHH-HHSS-------SSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHH
T ss_pred cCCcEEEEeChHH-HHHh-------hcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccc
Confidence 9999988766432 1111 110000000 000 0112 234556778999999999877765
No 37
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=97.93 E-value=2.9e-05 Score=84.83 Aligned_cols=125 Identities=15% Similarity=0.078 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHHHHHHh
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYL 285 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~vA~~l 285 (589)
+.+.+...+.++..+.. .++.+.||||.||++++.++.+.. .++.++++... ...|.+.++++++.+
T Consensus 193 ~~~~~~~i~~ir~~~~~-~kvvvalSGGvDSsvla~ll~~~g----------~~v~av~vd~g~~~~~e~~~v~~~~~~l 261 (503)
T 2ywb_A 193 EHVLEELLREVRERAGK-DRVLLAVSGGVDSSTLALLLAKAG----------VDHLAVFVDHGLLRLGEREEVEGALRAL 261 (503)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEEECSSHHHHHHHHHHHHHT----------CEEEEEEEECSCSCTTHHHHHHHHHHHT
T ss_pred hhhhHHHHHhhhhhccC-ccEEEEecCCcchHHHHHHHHHcC----------CeEEEEEEeCCCCChHHHHHHHHHHHHh
Confidence 33444444555555543 579999999999999999998762 46788877532 346889999999999
Q ss_pred CCcceEEEeChhhhHHhHHHHHhhhccCcc-ccccchHHHHHHHHHHHhc-CCeEEEeCCcchhc
Q 007799 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 348 (589)
Q Consensus 286 g~~h~~v~~~~~~~~~~l~~~i~~~e~~~~-~~~~~~~~~~~l~~~a~~~-g~~vvLsG~GgDEl 348 (589)
|++|+.+.++.. +.+.+.. ...+.. ..+........+.+.+++. |++.+++|+..|.+
T Consensus 262 gi~~~vv~~~~~-f~~~l~g----~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~ 321 (503)
T 2ywb_A 262 GVNLLVVDAKER-FLKALKG----VEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDV 321 (503)
T ss_dssp TCCEEEEECHHH-HHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHH
T ss_pred CCCEEEEECcHH-HHHhhcC----CCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccc
Confidence 999999886531 1221111 000100 0000011112344556666 89999999976544
No 38
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=97.79 E-value=6.8e-05 Score=72.39 Aligned_cols=109 Identities=11% Similarity=0.099 Sum_probs=68.0
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHHHHHHhCCcceEEEeChhhhHHhH
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l 303 (589)
.++.+.+|||.||++++.++.+.. .++..+++... ...+..+++++++.+|++++.+..... .....
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----------~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~~-~~~~~ 113 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES-AAWQE 113 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----------TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----------CCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCCC-HHHHH
Confidence 479999999999999999998764 45667766442 223578899999999999998876532 11111
Q ss_pred HHHHhhhccCcc-ccc---cchHH-HHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 304 EEVIYHVETYDV-TTI---RASTP-MFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 304 ~~~i~~~e~~~~-~~~---~~~~~-~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
.+ .. ..+.. +.. ..... ...+.+.+++.|+.++++|.-.|+-
T Consensus 114 ~~--~g-~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~ 160 (215)
T 1sur_A 114 AR--YG-KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS 160 (215)
T ss_dssp HH--HC-CGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSS
T ss_pred Hh--cC-CCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhh
Confidence 11 00 11110 000 00000 0124456677788899999999883
No 39
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=97.71 E-value=6.8e-05 Score=79.82 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=70.2
Q ss_pred CCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CC-CcHHHHHHHHHHh-----CCcceEEEeCh
Q 007799 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GS-PDLKYAKEVADYL-----GTVHHEFHFTV 296 (589)
Q Consensus 225 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~-~D~~~A~~vA~~l-----g~~h~~v~~~~ 296 (589)
..++.+++|||+||++++.++.+. +.++.++++... ++ .+...++++|+.+ |++++.+.++.
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~~----------G~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~ 256 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMKR----------GVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTE 256 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHHB----------TEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHH
T ss_pred CCeEEEEeCCCChHHHHHHHHHHc----------CCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcH
Confidence 346889999999999999998864 257788777653 22 3667788899999 89999888754
Q ss_pred hhhHHhHHHHHhhhccCccccccchHHHH-HHHHHHHhcCCeEEEeCCcchhc
Q 007799 297 QDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 297 ~~~~~~l~~~i~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
.. ..+.+ ... .....+..--.+| .+.+.|++.|+..+++|+-.|.+
T Consensus 257 ~~--~~i~~---~~~-~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ 303 (413)
T 2c5s_A 257 VQ--KTINK---EIP-SSYSMTVMRRMMMRITERIAEERNALAITTGESLGQV 303 (413)
T ss_dssp HH--HHHHH---HSC-GGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSST
T ss_pred HH--HHHHh---cCC-cccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhh
Confidence 21 12111 111 0000111111233 34566778899999999988765
No 40
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=97.70 E-value=5.7e-05 Score=83.61 Aligned_cols=138 Identities=20% Similarity=0.210 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhhhccC--CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCc--HHHHHHHH
Q 007799 207 PLVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD--LKYAKEVA 282 (589)
Q Consensus 207 ~~~lr~~l~~aV~~rl~sd--~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D--~~~A~~vA 282 (589)
.+++.+.+.-.++.+++.. ..+.+-||||+||+++++++.+.+.. .+++++++....+.+ ...|+.+|
T Consensus 280 ~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~--------~~v~~v~mp~~~ts~~t~~~a~~la 351 (565)
T 4f4h_A 280 EAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGA--------ERVRAVMMPSRYTAGISTTDAADMA 351 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCC--------ccEEEEeccccccccchHHHHHHHH
Confidence 4567777777788877643 35677899999999999999988743 468888876655554 56799999
Q ss_pred HHhCCcceEEEeChhhhHHhHHHHHhhh-c--cCccc--cccchHHHHHHHHHHHhcCCeEEEeCCcchhcccccccc
Q 007799 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-E--TYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (589)
Q Consensus 283 ~~lg~~h~~v~~~~~~~~~~l~~~i~~~-e--~~~~~--~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGY~~~ 355 (589)
+.+|+.|+++.+++ ..+.+...+.+. . ..+.+ .+.+-+-+-++...+.+.|.-|+=||+-+ |+.-||..+
T Consensus 352 ~~lg~~~~~i~i~~--~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn~s-E~a~Gy~T~ 426 (565)
T 4f4h_A 352 RRVGVRYDEIAIAP--MFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGNKS-EMAVGYCTL 426 (565)
T ss_dssp HHHTCEEEECCCHH--HHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHH-HHHHTCSCT
T ss_pred HHhCCceeeeecch--HHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCchh-hHhhccccc
Confidence 99999999887643 344433333221 1 11111 12222334455566667787777777655 577788643
No 41
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=97.68 E-value=7.7e-05 Score=84.24 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHHHHHH
Q 007799 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADY 284 (589)
Q Consensus 207 ~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~vA~~ 284 (589)
.+.+.+.+.+.++..+. +.++.+.||||+||+++++++.+...+ .++.++++... ...|.+.|+++|+.
T Consensus 223 ~~~~~~~~i~~Ir~~v~-~~~vvv~lSGGvDSsVla~Ll~~alG~--------~~V~aV~vd~g~~~~~e~e~a~~~a~~ 293 (697)
T 2vxo_A 223 VQNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLNRALNQ--------EQVIAVHIDNGFMRKRESQSVEEALKK 293 (697)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHHHHSCG--------GGEEEEEEECSCCCSSTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc-ccceEEEccCchHHHHHHHHHHHhcCC--------ceEEEEEeccccCCcchHHHHHHHHHH
Confidence 34555556666666664 468999999999999999999887521 47888887553 24688999999999
Q ss_pred hCCcceEEEeC
Q 007799 285 LGTVHHEFHFT 295 (589)
Q Consensus 285 lg~~h~~v~~~ 295 (589)
+|++|+.+.++
T Consensus 294 lGI~~~vvdi~ 304 (697)
T 2vxo_A 294 LGIQVKVINAA 304 (697)
T ss_dssp TTCCEEEEECH
T ss_pred hCCcEEEecch
Confidence 99999998875
No 42
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.64 E-value=0.00014 Score=80.27 Aligned_cols=126 Identities=10% Similarity=0.121 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC--CCCCcHHHH-HHHHHH
Q 007799 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYA-KEVADY 284 (589)
Q Consensus 208 ~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~D~~~A-~~vA~~ 284 (589)
+.+.+...+.+++. ..+..+.+.||||+||+++|+++.+.. +.++.++++.. ....|...+ +.+++.
T Consensus 239 ~~~~~~~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~---------G~~v~~v~vd~g~~~~~e~~~~~~~~~~~ 308 (556)
T 3uow_A 239 IRYHELELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIF---------KERFFGIFIDNGLLRKNEAENVYTFLKST 308 (556)
T ss_dssp HHHHHHHHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCSCTTHHHHHHHHHHHH
T ss_pred ccccccceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHh---------CCeEEEEEEecCCCChHHHHHHHHHHHHh
Confidence 45555555666666 436789999999999999999998865 25788888743 334567666 669999
Q ss_pred h-CCcceEEEeChhhhHHhHHHHHhhhccCcc-ccccchHHHHHHHHHHHhcCC----eEEEeCCcchhc
Q 007799 285 L-GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLGV----KMVISGEGSDEI 348 (589)
Q Consensus 285 l-g~~h~~v~~~~~~~~~~l~~~i~~~e~~~~-~~~~~~~~~~~l~~~a~~~g~----~vvLsG~GgDEl 348 (589)
+ |++|+.+.++.. +...+.. ...+.. ..+........+.+.+++.|. +.+.+|...|.+
T Consensus 309 l~gi~~~~vd~~~~-f~~~l~g----~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ 373 (556)
T 3uow_A 309 FPDMNITKIDASEN-FLSNLQG----VTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDI 373 (556)
T ss_dssp CTTSEEEEEECHHH-HHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHH
T ss_pred cCCCCeEEeccHHH-HHHhhcC----CCChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccChHH
Confidence 9 999999887532 2222111 000000 000001112234555666664 788888766654
No 43
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=97.53 E-value=0.00027 Score=75.65 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=70.4
Q ss_pred HHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC--CC-C-CcHHHHHHHHHHhCCcceEEE
Q 007799 218 VIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EG-S-PDLKYAKEVADYLGTVHHEFH 293 (589)
Q Consensus 218 V~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~-~-~D~~~A~~vA~~lg~~h~~v~ 293 (589)
+.+.+....++.+.+|||.||++++.++.+...+. .+.++.++++.. .. + .|..+++++|+.+|++++.+.
T Consensus 6 l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-----~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-----PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp HHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-----TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-----CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 33445556789999999999999999998764320 134677777753 22 2 257789999999999999887
Q ss_pred eChhhhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 294 FTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 294 ~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
++... ...... ..+....|.+...+.. ++.++++|+-+|..
T Consensus 81 ~~~~~------------~~~~~e-~~aR~~Ry~~l~~~a~-~~~~i~tgH~~dD~ 121 (433)
T 1ni5_A 81 VQLAQ------------EGLGIE-AQARQARYQAFARTLL-PGEVLVTAQHLDDQ 121 (433)
T ss_dssp CCCCC------------SSSTTT-THHHHHHHHHHHHTCC-TTEEEECCCCHHHH
T ss_pred ecCCC------------CCCCHH-HHHHHHHHHHHHHHHh-hCCeEEeeccchHH
Confidence 75421 000000 0011223333333322 48899999988863
No 44
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.35 E-value=0.00041 Score=68.68 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=66.0
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHHHHHHhCCcceEEEeChhhhHHhH
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l 303 (589)
.++.+.+|||.||++++.++.+.. .++..+++... ...+..+++++++.+|++++.+..... .....
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----------~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~~~-~~~~~ 114 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES-AAWQE 114 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----------TTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSC-HHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----------CCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCCC-HHHHH
Confidence 468999999999999999998764 45667776432 123578899999999999877654421 11111
Q ss_pred HHHHhhhccCcc-cccc---chHH-HHHHHHHHHhcCCeEEEeCCcchh
Q 007799 304 EEVIYHVETYDV-TTIR---ASTP-MFLMSRKIKSLGVKMVISGEGSDE 347 (589)
Q Consensus 304 ~~~i~~~e~~~~-~~~~---~~~~-~~~l~~~a~~~g~~vvLsG~GgDE 347 (589)
.. +. ..+.. +..+ .... ...+.+.+++.|+.+++||.-.|+
T Consensus 115 ~~--~g-~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dd 160 (252)
T 2o8v_A 115 AR--YG-KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 160 (252)
T ss_dssp HH--TC-CGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTT
T ss_pred HH--cC-CccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEeccccc
Confidence 11 00 11110 0000 0000 012345666778889999999887
No 45
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.28 E-value=0.0007 Score=69.59 Aligned_cols=112 Identities=12% Similarity=0.029 Sum_probs=66.6
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeC--CCCCcHHHHHHHHHHhCCcceEEEeChhhhHHhH
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~D~~~A~~vA~~lg~~h~~v~~~~~~~~~~l 303 (589)
.++.+.+|||.||++++.++.+..... ..++..+++.. .......+++++++.+|++++.+..... ..
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~------~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~--~~-- 116 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPG------KLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDG--VA-- 116 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTS------CCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC---------
T ss_pred CCEEEEEcChHHHHHHHHHHHHhcccc------CCCEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCchH--Hh--
Confidence 468899999999999999998875321 14567777643 2223578899999999999877654321 10
Q ss_pred HHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchhcc
Q 007799 304 EEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (589)
Q Consensus 304 ~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDElf 349 (589)
.-+. ....+....+...-...+.+.+++.|..++++|.-.||.-
T Consensus 117 -~G~~-~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~ 160 (325)
T 1zun_A 117 -QGIN-PFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK 160 (325)
T ss_dssp -----------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSG
T ss_pred -cCCC-ccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhh
Confidence 0000 0000000000000011345556667899999999998854
No 46
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.16 E-value=0.00053 Score=67.01 Aligned_cols=60 Identities=17% Similarity=0.079 Sum_probs=43.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--------CCCcHHHHHHHHHHhCCcceEEEeCh
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--------GSPDLKYAKEVADYLGTVHHEFHFTV 296 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--------~~~D~~~A~~vA~~lg~~h~~v~~~~ 296 (589)
++.+++|||.||++.++++.+.. ..+.+...-++ ...+...|+++|+.+|++|+.+.++.
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G----------~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNR----------FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred EEEEEecCcHHHHHHHHHHHHcC----------CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 68999999999999988887643 45554432221 12466789999999999999988764
No 47
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00098 Score=66.29 Aligned_cols=112 Identities=10% Similarity=0.008 Sum_probs=67.3
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEee--CCCCCcHHHHHHHHHHhCC----cceEEEeChhhh
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGT----VHHEFHFTVQDG 299 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~D~~~A~~vA~~lg~----~h~~v~~~~~~~ 299 (589)
.++.+.+|||.||++++.++.+.... ..++..+++. ........+++++++.+|+ +++.+......-
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-------~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~~~~~ 114 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-------YYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCES 114 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-------SCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTCSS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-------CCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecCCccC
Confidence 36899999999999999999887631 0256666663 3222357899999999998 877765432100
Q ss_pred HHhHHHH----HhhhccCccccccchH-HHHHHHHHHHhcCCeEEEeCCcchhc
Q 007799 300 IDAIEEV----IYHVETYDVTTIRAST-PMFLMSRKIKSLGVKMVISGEGSDEI 348 (589)
Q Consensus 300 ~~~l~~~----i~~~e~~~~~~~~~~~-~~~~l~~~a~~~g~~vvLsG~GgDEl 348 (589)
...+.+. ++.. +. ..+... -...+.+.+++.|++++++|.-.||-
T Consensus 115 ~~~~~~~~G~~~~~~---~~-~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds 164 (261)
T 2oq2_A 115 EADFASKYGDFLWEK---DD-DKYDYLAKVEPAHRAYKELHISAVFTGRRKSQG 164 (261)
T ss_dssp HHHHHHHHCTTHHHH---CH-HHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGC
T ss_pred HHHHHHHhCCCcccc---Ch-HHHHHHHhHHHHHHHHHHcCCCEEEEeccccch
Confidence 1111110 1110 00 000000 01123456677899999999999984
No 48
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=96.93 E-value=0.0011 Score=67.47 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=57.2
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCCCCCcHHHHHHHHHHh-------CCcceEEE-eChh
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYL-------GTVHHEFH-FTVQ 297 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~l-------g~~h~~v~-~~~~ 297 (589)
..+.++||| +||++.++++.+.+ ..+.+.++.. +..+...|+++|+.+ +++++.+. +..
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~G----------~~v~~v~~~~-~~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~~~~- 246 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKRG----------VEVIPVYIGK-DDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDR- 246 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHBT----------CEEEEEEESC-SSHHHHHHHHHHHHHHTTCTTSCCCCEEESSHHH-
T ss_pred CcEEEEEeC-CcHHHHHHHHHhCC----------CeEEEEEEEE-CHHHHHHHHHHHHHHhhhccCCCCcEEEeCCCHH-
Confidence 467899999 99999998887653 6777777762 234677899999999 55555553 210
Q ss_pred hhHHhHHHHHhhhccCccccccchHHHHHHHHHHHhcCCeEEEeCCcchh
Q 007799 298 DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (589)
Q Consensus 298 ~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GgDE 347 (589)
. + +.|.+.|+..+.||+-++.
T Consensus 247 ----~----------------------~---~~A~~~ga~~I~tG~~~~~ 267 (307)
T 1vbk_A 247 ----V----------------------L---KLIRDFGVKGVIKGLRPND 267 (307)
T ss_dssp ----H----------------------H---HHHHHHTCCEEECCCCGGG
T ss_pred ----H----------------------H---HHHHHcCCCEEEECcccch
Confidence 0 0 4456679999999997654
No 49
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=95.79 E-value=0.038 Score=55.12 Aligned_cols=59 Identities=8% Similarity=0.166 Sum_probs=45.7
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEeeCC--CCCcHHHHHHHHHHhCCcceEEEeC
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFT 295 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~D~~~A~~vA~~lg~~h~~v~~~ 295 (589)
.++.+.+| |.||++++.++.+.. .++..+++... ......+++++++.+|++++.+...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~----------~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~ 115 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLN----------RNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPD 115 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHC----------TTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCC
T ss_pred CCEEEEee-cHHHHHHHHHHHHhC----------CCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCC
Confidence 57899999 999999999998763 46677776432 2235788999999999998876544
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.048 Score=55.32 Aligned_cols=69 Identities=13% Similarity=0.008 Sum_probs=45.4
Q ss_pred CceEEeecCCcchHHHHHHHHHHhcccc---------c---ccccCCcceeEEeeCCC-CC-cHHHHHHHHHHhCCcceE
Q 007799 226 VPFGVLLSGGLDSSLVASITARHLAGTK---------A---ARQWGTQLHSFCVGLEG-SP-DLKYAKEVADYLGTVHHE 291 (589)
Q Consensus 226 ~pvgv~LSGGLDSS~Iaala~~~~~~~~---------~---~~~~~~~l~tfsig~~~-~~-D~~~A~~vA~~lg~~h~~ 291 (589)
.++.+.+|||.||++++.++.+.+.+.. . ......++..+++.... .+ ...+++++++.+|++++.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v 133 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSLYE 133 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4699999999999999999887642100 0 00001356677664321 22 568899999999998766
Q ss_pred EEe
Q 007799 292 FHF 294 (589)
Q Consensus 292 v~~ 294 (589)
+..
T Consensus 134 ~~~ 136 (306)
T 2wsi_A 134 SQR 136 (306)
T ss_dssp CCC
T ss_pred EeC
Confidence 543
No 51
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=85.32 E-value=1.2 Score=44.68 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=39.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccc-----ccc------ccc-CCcceeEEeeCC-CCCc-HHHHHHHHHHhCCcceE
Q 007799 227 PFGVLLSGGLDSSLVASITARHLAGT-----KAA------RQW-GTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHE 291 (589)
Q Consensus 227 pvgv~LSGGLDSS~Iaala~~~~~~~-----~~~------~~~-~~~l~tfsig~~-~~~D-~~~A~~vA~~lg~~h~~ 291 (589)
.+.+..|||.||++++-++.+.+.+. ..+ ... ..++..+.+... ..+| ..+..++++.+|++.+.
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v 138 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYE 138 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999988764110 000 000 024566665432 1244 46889999999986443
No 52
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=28.00 E-value=44 Score=40.54 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=25.9
Q ss_pred eEEEEEEcCCCCch-HHHHHHHHHHHhhhhcCC
Q 007799 2 CGILAVLGCSDDSQ-AKRVRVLELSRRLKHRGP 33 (589)
Q Consensus 2 cGI~gi~~~~~~~~-~~~~~~~~m~~~l~hRGp 33 (589)
|||.+|.+.++... ..-+...+++..|.|||-
T Consensus 1 CGvg~va~~~G~~sh~iv~~al~~L~~m~HRG~ 33 (1520)
T 1ofd_A 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRGG 33 (1520)
T ss_dssp CEEEEEECSSSCCBSHHHHHHHHHHHHTGGGSC
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccCc
Confidence 99999999887654 345677889999999993
No 53
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=25.77 E-value=1.9e+02 Score=27.27 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhhccCCceEEeecCCcchHHHHHHHHHHhcccccccccCCcceeEEee
Q 007799 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG 268 (589)
Q Consensus 207 ~~~lr~~l~~aV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfsig 268 (589)
.+.+.+.+.+.++..+....+..+.||||--=.. +...+.... -+| .+++.|...
T Consensus 26 ~~~aA~~i~~~i~~~~~~~~~~~l~LsgGsTp~~---ly~~L~~~~---i~w-~~v~~f~~D 80 (232)
T 1vl1_A 26 VDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLP---VYEKLAEQK---FPW-NRIHFFLSD 80 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHH---HHHHHTTSC---CCG-GGEEEEESE
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEcCCccHHH---HHHHHHHcC---CCh-hHEEEEeCe
Confidence 3445555555555544445667789999933222 333222211 124 578887653
No 54
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=24.15 E-value=54 Score=39.68 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCCchH-HHHHHHHHHHhhhhcCC
Q 007799 2 CGILAVLGCSDDSQA-KRVRVLELSRRLKHRGP 33 (589)
Q Consensus 2 cGI~gi~~~~~~~~~-~~~~~~~m~~~l~hRGp 33 (589)
|||.+|.+.++.... .-+...+++..|.|||-
T Consensus 1 CGvg~va~~~G~~sh~~v~~al~aL~~m~HRG~ 33 (1479)
T 1ea0_A 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGA 33 (1479)
T ss_dssp CEECEEEETTCCCBHHHHHHHHHHHTSCGGGSC
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccCc
Confidence 999999998876543 45667788999999997
Done!