Query 007800
Match_columns 589
No_of_seqs 184 out of 1405
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 15:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02573 pyruvate decarboxylas 100.0 3.4E-99 7E-104 832.2 59.8 564 26-589 15-578 (578)
2 COG0028 IlvB Thiamine pyrophos 100.0 8.1E-99 2E-103 814.3 50.1 518 26-565 1-533 (550)
3 TIGR01504 glyox_carbo_lig glyo 100.0 5.5E-94 1.2E-98 793.3 52.2 524 26-569 2-561 (588)
4 PRK08979 acetolactate synthase 100.0 1E-93 2.2E-98 790.9 51.8 526 26-568 3-551 (572)
5 PRK06965 acetolactate synthase 100.0 5.8E-93 1.3E-97 786.4 53.2 537 7-568 7-567 (587)
6 PRK07979 acetolactate synthase 100.0 4E-93 8.6E-98 787.2 51.7 528 25-568 2-553 (574)
7 PRK09107 acetolactate synthase 100.0 6.7E-93 1.5E-97 785.6 52.5 526 23-567 7-558 (595)
8 TIGR03393 indolpyr_decarb indo 100.0 3.7E-92 8E-97 773.8 56.2 532 27-573 1-537 (539)
9 PRK06466 acetolactate synthase 100.0 1.4E-92 3.1E-97 782.8 52.0 527 25-568 2-553 (574)
10 PRK07418 acetolactate synthase 100.0 2.7E-92 5.8E-97 785.4 53.6 531 18-567 10-563 (616)
11 PRK06048 acetolactate synthase 100.0 3.3E-92 7.2E-97 777.8 52.8 526 21-568 2-543 (561)
12 PRK07282 acetolactate synthase 100.0 1.6E-92 3.4E-97 779.8 49.6 523 24-568 7-546 (566)
13 TIGR03394 indol_phenyl_DC indo 100.0 1.6E-91 3.4E-96 765.5 54.9 528 28-575 1-533 (535)
14 PRK06725 acetolactate synthase 100.0 6E-92 1.3E-96 774.3 51.9 523 25-568 13-550 (570)
15 PRK07789 acetolactate synthase 100.0 1.2E-91 2.6E-96 779.6 53.9 544 6-567 8-580 (612)
16 PRK08527 acetolactate synthase 100.0 4.7E-92 1E-96 776.9 49.7 524 26-569 2-544 (563)
17 PRK08322 acetolactate synthase 100.0 9.4E-92 2E-96 774.2 51.6 527 27-578 1-543 (547)
18 COG3961 Pyruvate decarboxylase 100.0 1.6E-91 3.5E-96 709.5 47.6 551 25-584 2-556 (557)
19 TIGR03457 sulphoacet_xsc sulfo 100.0 2.8E-91 6.1E-96 773.2 54.0 529 26-576 1-570 (579)
20 PRK11269 glyoxylate carboligas 100.0 2.1E-91 4.5E-96 775.3 52.6 522 26-567 3-560 (591)
21 PRK08978 acetolactate synthase 100.0 1.7E-91 3.7E-96 771.3 50.9 517 27-569 1-531 (548)
22 PRK06456 acetolactate synthase 100.0 1.7E-91 3.6E-96 775.1 50.1 524 26-568 1-550 (572)
23 PLN02470 acetolactate synthase 100.0 4.7E-91 1E-95 771.7 52.1 522 26-568 12-562 (585)
24 PRK08155 acetolactate synthase 100.0 9.3E-91 2E-95 767.4 52.4 522 26-569 12-549 (564)
25 PRK08617 acetolactate synthase 100.0 5.8E-91 1.3E-95 767.7 50.3 524 25-572 3-545 (552)
26 CHL00099 ilvB acetohydroxyacid 100.0 1.1E-90 2.5E-95 767.9 52.6 524 26-568 9-560 (585)
27 TIGR02418 acolac_catab acetola 100.0 7.4E-91 1.6E-95 764.7 50.2 518 29-570 1-537 (539)
28 PRK07710 acetolactate synthase 100.0 1.2E-90 2.5E-95 767.0 50.3 523 26-569 15-554 (571)
29 PRK08273 thiamine pyrophosphat 100.0 2.1E-90 4.5E-95 767.5 51.1 518 27-566 3-549 (597)
30 PRK08611 pyruvate oxidase; Pro 100.0 7.6E-90 1.7E-94 760.0 52.8 516 26-568 3-535 (576)
31 PRK06882 acetolactate synthase 100.0 7.1E-90 1.5E-94 762.4 51.8 526 26-568 3-551 (574)
32 TIGR00118 acolac_lg acetolacta 100.0 5.9E-90 1.3E-94 760.6 50.5 523 27-569 1-542 (558)
33 PRK06457 pyruvate dehydrogenas 100.0 6.8E-90 1.5E-94 757.5 48.6 506 27-568 2-524 (549)
34 PRK06276 acetolactate synthase 100.0 1.1E-89 2.5E-94 760.7 50.3 521 27-567 1-547 (586)
35 PRK05858 hypothetical protein; 100.0 8.5E-90 1.8E-94 755.6 48.8 515 25-569 3-536 (542)
36 PRK08199 thiamine pyrophosphat 100.0 8.1E-90 1.8E-94 758.8 48.6 518 26-569 7-544 (557)
37 PRK07525 sulfoacetaldehyde ace 100.0 2.3E-89 5E-94 758.6 52.3 523 26-570 5-569 (588)
38 PRK09124 pyruvate dehydrogenas 100.0 2.6E-89 5.7E-94 757.4 52.1 515 27-568 3-535 (574)
39 TIGR02720 pyruv_oxi_spxB pyruv 100.0 3.8E-89 8.1E-94 754.3 51.4 519 29-569 1-538 (575)
40 PRK06546 pyruvate dehydrogenas 100.0 2.6E-89 5.6E-94 755.3 49.8 512 27-566 3-533 (578)
41 PRK06154 hypothetical protein; 100.0 4.2E-89 9.2E-94 750.9 50.7 515 25-566 18-558 (565)
42 KOG1184 Thiamine pyrophosphate 100.0 3.4E-88 7.4E-93 682.0 48.2 560 25-585 2-561 (561)
43 PRK07524 hypothetical protein; 100.0 2.2E-88 4.8E-93 744.4 50.1 510 27-565 2-531 (535)
44 TIGR03254 oxalate_oxc oxalyl-C 100.0 2.4E-88 5.2E-93 746.6 49.5 521 26-570 2-545 (554)
45 PRK07064 hypothetical protein; 100.0 2.7E-88 5.8E-93 746.3 47.6 510 26-566 2-531 (544)
46 PRK06112 acetolactate synthase 100.0 1.6E-87 3.4E-92 743.7 52.0 534 15-569 2-566 (578)
47 PRK09259 putative oxalyl-CoA d 100.0 9E-88 2E-92 743.7 48.6 519 26-569 9-552 (569)
48 PRK08266 hypothetical protein; 100.0 4.7E-87 1E-91 735.5 48.7 510 26-569 3-531 (542)
49 PRK08327 acetolactate synthase 100.0 3E-86 6.6E-91 730.3 45.3 516 26-564 6-568 (569)
50 PRK07586 hypothetical protein; 100.0 5.3E-85 1.1E-89 714.8 49.9 492 27-562 1-514 (514)
51 PRK12474 hypothetical protein; 100.0 5E-85 1.1E-89 714.1 49.3 489 25-562 3-518 (518)
52 PRK07092 benzoylformate decarb 100.0 9.4E-85 2E-89 714.4 50.3 506 26-563 11-530 (530)
53 KOG1185 Thiamine pyrophosphate 100.0 3.9E-84 8.4E-89 646.4 41.5 519 25-569 12-566 (571)
54 PRK07449 2-succinyl-5-enolpyru 100.0 6.9E-85 1.5E-89 722.3 37.5 531 27-580 9-566 (568)
55 KOG4166 Thiamine pyrophosphate 100.0 3.8E-84 8.3E-89 634.2 31.8 522 26-567 90-651 (675)
56 PLN02980 2-oxoglutarate decarb 100.0 3.9E-75 8.5E-80 700.4 41.5 532 27-578 301-904 (1655)
57 COG3960 Glyoxylate carboligase 100.0 4.4E-68 9.5E-73 507.7 26.8 522 27-567 4-560 (592)
58 COG3962 Acetolactate synthase 100.0 4.5E-67 9.7E-72 519.9 34.0 531 27-569 7-581 (617)
59 TIGR00173 menD 2-succinyl-5-en 100.0 2.1E-67 4.5E-72 562.2 29.5 411 29-453 2-431 (432)
60 COG1165 MenD 2-succinyl-6-hydr 100.0 6.7E-55 1.5E-59 448.1 30.7 524 27-581 8-564 (566)
61 cd07039 TPP_PYR_POX Pyrimidine 100.0 3.5E-40 7.5E-45 304.1 17.3 161 28-196 1-162 (164)
62 cd07038 TPP_PYR_PDC_IPDC_like 100.0 2.1E-38 4.5E-43 291.9 18.4 162 31-192 1-162 (162)
63 TIGR03336 IOR_alpha indolepyru 100.0 1.1E-35 2.3E-40 328.6 42.5 490 24-567 2-534 (595)
64 cd07037 TPP_PYR_MenD Pyrimidin 100.0 2.3E-38 4.9E-43 289.5 16.0 153 32-192 2-162 (162)
65 TIGR03297 Ppyr-DeCO2ase phosph 100.0 8.1E-35 1.8E-39 299.0 31.7 330 41-567 1-340 (361)
66 PF02776 TPP_enzyme_N: Thiamin 100.0 5.8E-37 1.3E-41 286.4 13.9 164 27-197 1-166 (172)
67 cd02013 TPP_Xsc_like Thiamine 100.0 1.4E-34 3E-39 275.7 18.7 182 389-575 2-191 (196)
68 cd02006 TPP_Gcl Thiamine pyrop 100.0 4.9E-34 1.1E-38 273.6 17.7 176 388-568 5-199 (202)
69 cd02010 TPP_ALS Thiamine pyrop 100.0 7.3E-33 1.6E-37 259.3 17.4 168 394-568 2-175 (177)
70 cd02005 TPP_PDC_IPDC Thiamine 100.0 8.5E-33 1.8E-37 260.2 17.3 176 390-571 1-182 (183)
71 cd02015 TPP_AHAS Thiamine pyro 100.0 2.3E-32 5E-37 258.8 18.0 171 391-568 1-179 (186)
72 cd02003 TPP_IolD Thiamine pyro 100.0 1E-32 2.2E-37 264.7 14.6 172 395-573 3-194 (205)
73 cd07035 TPP_PYR_POX_like Pyrim 100.0 6.8E-32 1.5E-36 248.3 16.2 153 31-192 1-155 (155)
74 cd02014 TPP_POX Thiamine pyrop 100.0 2.8E-31 6E-36 249.4 18.3 172 390-568 1-178 (178)
75 cd02009 TPP_SHCHC_synthase Thi 100.0 9.7E-32 2.1E-36 251.5 15.1 164 392-563 2-175 (175)
76 cd02004 TPP_BZL_OCoD_HPCL Thia 100.0 5.3E-31 1.1E-35 246.4 16.7 164 393-563 1-172 (172)
77 PRK06163 hypothetical protein; 100.0 7.6E-30 1.6E-34 241.9 16.4 162 389-566 11-176 (202)
78 cd07034 TPP_PYR_PFOR_IOR-alpha 100.0 1.3E-29 2.8E-34 234.4 17.3 154 29-190 1-158 (160)
79 cd02002 TPP_BFDC Thiamine pyro 100.0 1.8E-29 3.8E-34 237.7 16.9 164 391-562 1-178 (178)
80 cd02001 TPP_ComE_PpyrDC Thiami 100.0 4.6E-29 1E-33 228.4 16.5 155 394-565 2-157 (157)
81 TIGR03846 sulfopy_beta sulfopy 100.0 4.4E-28 9.6E-33 226.9 16.7 157 394-567 2-160 (181)
82 cd06586 TPP_enzyme_PYR Pyrimid 100.0 5.2E-28 1.1E-32 222.3 16.4 154 31-192 1-154 (154)
83 cd03371 TPP_PpyrDC Thiamine py 100.0 4.8E-28 1E-32 228.3 16.3 161 394-568 2-168 (188)
84 PF02775 TPP_enzyme_C: Thiamin 100.0 1.6E-28 3.4E-33 225.2 12.5 141 413-560 1-153 (153)
85 cd02008 TPP_IOR_alpha Thiamine 100.0 1.2E-27 2.7E-32 224.6 15.5 162 388-563 7-177 (178)
86 cd00568 TPP_enzymes Thiamine p 99.9 1.1E-26 2.3E-31 216.8 17.3 160 396-562 2-168 (168)
87 cd03375 TPP_OGFOR Thiamine pyr 99.9 9.1E-27 2E-31 220.9 16.6 149 405-568 25-189 (193)
88 cd03376 TPP_PFOR_porB_like Thi 99.9 1.3E-26 2.8E-31 225.9 16.7 169 389-566 9-203 (235)
89 cd03372 TPP_ComE Thiamine pyro 99.9 2E-26 4.3E-31 215.9 16.6 157 394-568 2-160 (179)
90 cd02018 TPP_PFOR Thiamine pyro 99.9 2.9E-26 6.4E-31 223.8 17.7 172 389-566 9-206 (237)
91 COG4231 Indolepyruvate ferredo 99.9 1.8E-24 3.8E-29 226.6 28.5 488 24-564 13-555 (640)
92 PRK09628 oorB 2-oxoglutarate-a 99.9 6.9E-26 1.5E-30 224.1 16.4 162 390-566 25-204 (277)
93 PRK11867 2-oxoglutarate ferred 99.9 2.4E-25 5.3E-30 221.8 18.0 174 389-578 21-218 (286)
94 TIGR03845 sulfopyru_alph sulfo 99.9 1.7E-25 3.7E-30 203.7 14.9 152 31-194 2-156 (157)
95 PRK05778 2-oxoglutarate ferred 99.9 4.1E-25 8.9E-30 220.9 17.8 161 391-566 28-206 (301)
96 PRK11869 2-oxoacid ferredoxin 99.9 1.7E-24 3.8E-29 213.6 16.4 163 390-567 13-197 (280)
97 PRK11866 2-oxoacid ferredoxin 99.9 5.4E-24 1.2E-28 210.3 18.0 164 389-567 11-196 (279)
98 TIGR02177 PorB_KorB 2-oxoacid: 99.9 1.3E-23 2.8E-28 208.1 16.8 161 391-567 7-190 (287)
99 PF00205 TPP_enzyme_M: Thiamin 99.9 2.4E-23 5.2E-28 187.1 13.0 132 225-358 1-137 (137)
100 PRK13030 2-oxoacid ferredoxin 99.9 1.5E-20 3.3E-25 215.1 36.5 484 23-561 16-601 (1159)
101 PRK09193 indolepyruvate ferred 99.9 4.3E-20 9.4E-25 210.7 34.6 489 22-561 23-615 (1165)
102 PRK13029 2-oxoacid ferredoxin 99.8 9.8E-18 2.1E-22 191.0 36.9 488 22-561 26-629 (1186)
103 cd02012 TPP_TK Thiamine pyroph 99.7 6.7E-17 1.4E-21 160.6 12.2 124 436-569 102-233 (255)
104 cd02000 TPP_E1_PDC_ADC_BCADC T 99.7 6.9E-16 1.5E-20 156.3 12.5 120 435-564 100-229 (293)
105 TIGR03181 PDH_E1_alph_x pyruva 99.6 5.4E-16 1.2E-20 159.8 11.0 117 436-564 119-247 (341)
106 PRK11865 pyruvate ferredoxin o 99.6 6.4E-15 1.4E-19 146.6 16.7 172 388-567 21-215 (299)
107 TIGR03182 PDH_E1_alph_y pyruva 99.6 1.9E-15 4.2E-20 154.1 12.0 121 434-564 105-235 (315)
108 CHL00149 odpA pyruvate dehydro 99.6 6.6E-15 1.4E-19 151.3 11.1 116 436-564 125-260 (341)
109 PRK05899 transketolase; Review 99.6 1.1E-14 2.3E-19 162.8 12.0 116 437-564 116-249 (624)
110 PRK11864 2-ketoisovalerate fer 99.6 8.2E-14 1.8E-18 138.6 16.1 172 389-567 22-211 (300)
111 cd02007 TPP_DXS Thiamine pyrop 99.5 3.4E-13 7.3E-18 128.0 11.4 111 436-564 72-191 (195)
112 PRK00945 acetyl-CoA decarbonyl 99.5 2.9E-13 6.3E-18 123.2 9.7 131 226-361 25-167 (171)
113 PLN02374 pyruvate dehydrogenas 99.5 2.9E-13 6.4E-18 142.1 11.2 118 434-564 189-326 (433)
114 TIGR00315 cdhB CO dehydrogenas 99.4 3.2E-13 7E-18 122.1 8.6 131 226-361 18-159 (162)
115 COG1013 PorB Pyruvate:ferredox 99.3 2.4E-11 5.2E-16 121.5 16.2 167 390-568 20-209 (294)
116 PRK05444 1-deoxy-D-xylulose-5- 99.3 6.4E-12 1.4E-16 139.2 12.4 123 436-567 114-246 (580)
117 TIGR03710 OAFO_sf 2-oxoacid:ac 99.2 1.3E-09 2.9E-14 119.8 23.5 168 21-196 190-364 (562)
118 PRK07119 2-ketoisovalerate fer 99.2 3.2E-09 7E-14 109.9 24.5 163 26-197 6-176 (352)
119 PRK08659 2-oxoglutarate ferred 99.1 4E-09 8.7E-14 110.1 17.8 164 26-197 6-176 (376)
120 PRK09627 oorA 2-oxoglutarate-a 99.1 2.8E-09 6E-14 110.9 16.0 164 26-197 5-175 (375)
121 PRK12571 1-deoxy-D-xylulose-5- 99.0 1.4E-09 2.9E-14 121.4 12.6 124 437-567 121-287 (641)
122 PLN02790 transketolase 99.0 1.5E-09 3.3E-14 121.4 12.5 118 436-564 102-239 (654)
123 PF00676 E1_dh: Dehydrogenase 99.0 7.2E-10 1.6E-14 112.4 8.8 117 438-564 100-226 (300)
124 COG1071 AcoA Pyruvate/2-oxoglu 99.0 1.5E-09 3.2E-14 110.0 9.9 118 436-564 133-262 (358)
125 PF00456 Transketolase_N: Tran 99.0 8.9E-10 1.9E-14 112.4 7.8 117 437-564 109-244 (332)
126 PRK12315 1-deoxy-D-xylulose-5- 99.0 4.4E-09 9.5E-14 116.3 13.1 122 437-567 111-247 (581)
127 PRK12754 transketolase; Review 99.0 3.5E-09 7.6E-14 117.6 12.0 117 437-564 112-247 (663)
128 PRK08366 vorA 2-ketoisovalerat 98.9 1.7E-08 3.7E-13 105.5 15.9 156 25-192 4-166 (390)
129 TIGR00232 tktlase_bact transke 98.9 4.2E-09 9.1E-14 117.8 11.8 118 436-564 107-243 (653)
130 PRK12753 transketolase; Review 98.9 4E-09 8.7E-14 117.9 11.4 117 437-564 112-247 (663)
131 PF13292 DXP_synthase_N: 1-deo 98.9 5.8E-09 1.2E-13 100.4 10.8 163 391-562 44-270 (270)
132 PTZ00089 transketolase; Provis 98.9 5.4E-09 1.2E-13 117.1 12.3 117 437-564 114-250 (661)
133 PRK09622 porA pyruvate flavodo 98.9 2.4E-08 5.2E-13 105.5 16.2 161 24-194 10-177 (407)
134 COG3959 Transketolase, N-termi 98.9 9.5E-09 2.1E-13 95.5 10.9 115 438-563 118-241 (243)
135 PRK08367 porA pyruvate ferredo 98.9 2.8E-08 6.1E-13 104.1 15.9 159 25-193 5-170 (394)
136 cd02016 TPP_E1_OGDC_like Thiam 98.9 1.1E-08 2.3E-13 100.4 10.4 122 434-565 108-248 (265)
137 cd03377 TPP_PFOR_PNO Thiamine 98.8 1.2E-07 2.6E-12 96.3 17.3 175 388-566 9-270 (365)
138 cd02017 TPP_E1_EcPDC_like Thia 98.8 2.8E-08 6.1E-13 101.8 12.0 118 437-565 116-319 (386)
139 COG4032 Predicted thiamine-pyr 98.8 4.3E-08 9.4E-13 83.8 10.9 162 26-195 3-166 (172)
140 PF01855 POR_N: Pyruvate flavo 98.8 3.8E-08 8.2E-13 95.5 11.7 151 36-195 2-157 (230)
141 PLN02269 Pyruvate dehydrogenas 98.8 2.4E-08 5.3E-13 103.2 10.4 116 436-564 135-260 (362)
142 COG0021 TktA Transketolase [Ca 98.8 3.2E-08 6.8E-13 105.5 11.2 116 438-564 115-249 (663)
143 TIGR00204 dxs 1-deoxy-D-xylulo 98.7 1.6E-07 3.5E-12 104.5 12.6 123 437-567 109-278 (617)
144 PLN02234 1-deoxy-D-xylulose-5- 98.6 2.2E-07 4.7E-12 102.4 12.9 129 436-571 174-329 (641)
145 COG1154 Dxs Deoxyxylulose-5-ph 98.6 3.5E-07 7.6E-12 97.1 11.0 168 391-566 48-282 (627)
146 cd02011 TPP_PK Thiamine pyroph 98.5 4.3E-07 9.3E-12 86.9 10.3 102 437-548 60-170 (227)
147 TIGR03186 AKGDH_not_PDH alpha- 98.5 5.7E-07 1.2E-11 101.6 12.1 117 437-564 187-389 (889)
148 PLN02225 1-deoxy-D-xylulose-5- 98.5 6.4E-07 1.4E-11 98.9 12.1 171 390-566 122-367 (701)
149 KOG0523 Transketolase [Carbohy 98.5 7.6E-07 1.7E-11 94.0 11.5 117 436-563 115-241 (632)
150 PRK09404 sucA 2-oxoglutarate d 98.4 6.2E-07 1.3E-11 102.4 9.5 117 438-564 313-449 (924)
151 PLN02582 1-deoxy-D-xylulose-5- 98.4 1.8E-06 3.9E-11 96.1 12.3 127 436-567 141-324 (677)
152 TIGR00759 aceE pyruvate dehydr 98.4 2.1E-06 4.6E-11 95.9 12.1 117 437-564 187-389 (885)
153 COG0674 PorA Pyruvate:ferredox 98.4 1.1E-05 2.5E-10 83.8 16.3 162 25-196 4-169 (365)
154 PRK13012 2-oxoacid dehydrogena 98.3 4.4E-06 9.6E-11 94.9 13.0 117 437-564 201-403 (896)
155 TIGR00239 2oxo_dh_E1 2-oxoglut 98.3 2.9E-06 6.3E-11 96.6 11.1 124 432-564 308-450 (929)
156 COG1880 CdhB CO dehydrogenase/ 98.2 5.6E-06 1.2E-10 72.5 8.9 124 226-362 26-168 (170)
157 PRK09405 aceE pyruvate dehydro 98.2 9.2E-06 2E-10 92.0 12.8 117 437-564 193-395 (891)
158 KOG0225 Pyruvate dehydrogenase 98.2 4.6E-06 1E-10 81.9 7.7 118 435-564 161-288 (394)
159 TIGR02176 pyruv_ox_red pyruvat 98.1 4.5E-05 9.7E-10 90.6 15.8 156 26-191 3-168 (1165)
160 PRK05261 putative phosphoketol 98.1 1.8E-05 4E-10 88.5 11.1 117 438-564 141-284 (785)
161 TIGR02176 pyruv_ox_red pyruvat 97.8 0.00061 1.3E-08 81.1 17.2 105 458-566 952-1070(1165)
162 KOG1182 Branched chain alpha-k 97.4 0.00016 3.5E-09 70.5 4.3 114 438-564 192-319 (432)
163 PF02552 CO_dh: CO dehydrogena 97.4 0.00026 5.7E-09 64.5 5.1 128 224-361 23-166 (167)
164 cd07035 TPP_PYR_POX_like Pyrim 96.9 0.0087 1.9E-07 54.6 10.6 107 442-561 44-154 (155)
165 PF02776 TPP_enzyme_N: Thiamin 96.9 0.0099 2.1E-07 55.3 10.8 119 429-563 39-162 (172)
166 cd07039 TPP_PYR_POX Pyrimidine 96.8 0.012 2.5E-07 54.4 10.2 119 430-564 39-160 (164)
167 COG1029 FwdB Formylmethanofura 96.5 0.013 2.8E-07 58.9 8.7 109 220-339 64-189 (429)
168 cd07033 TPP_PYR_DXS_TK_like Py 96.2 0.21 4.5E-06 45.6 14.7 149 30-192 4-156 (156)
169 cd06586 TPP_enzyme_PYR Pyrimid 96.1 0.049 1.1E-06 49.3 10.4 105 443-561 46-153 (154)
170 cd07038 TPP_PYR_PDC_IPDC_like 96.0 0.06 1.3E-06 49.5 10.2 110 443-561 46-161 (162)
171 PF09364 XFP_N: XFP N-terminal 95.7 0.012 2.7E-07 59.6 4.3 97 438-542 139-242 (379)
172 TIGR03845 sulfopyru_alph sulfo 95.5 0.19 4E-06 46.0 11.3 107 441-561 43-153 (157)
173 PRK12270 kgd alpha-ketoglutara 95.5 0.071 1.5E-06 60.6 10.0 114 441-564 621-754 (1228)
174 PTZ00182 3-methyl-2-oxobutanat 95.4 3.6 7.8E-05 42.9 21.7 160 22-195 30-208 (355)
175 cd07037 TPP_PYR_MenD Pyrimidin 95.3 0.09 2E-06 48.3 8.5 117 430-562 36-162 (162)
176 PLN02470 acetolactate synthase 94.7 0.59 1.3E-05 52.5 14.6 156 390-563 12-173 (585)
177 smart00861 Transket_pyr Transk 94.4 1.2 2.6E-05 41.0 13.8 114 67-192 51-166 (168)
178 COG3957 Phosphoketolase [Carbo 94.3 0.063 1.4E-06 58.7 5.3 92 438-539 152-252 (793)
179 PRK08611 pyruvate oxidase; Pro 94.0 0.27 5.9E-06 55.1 10.0 118 430-563 44-164 (576)
180 PRK07710 acetolactate synthase 93.9 0.26 5.6E-06 55.2 9.6 108 443-563 64-175 (571)
181 TIGR00232 tktlase_bact transke 93.9 1.1 2.4E-05 50.8 14.6 118 67-194 397-516 (653)
182 PF02775 TPP_enzyme_C: Thiamin 93.9 0.11 2.4E-06 47.1 5.5 111 76-190 32-153 (153)
183 PRK07524 hypothetical protein; 93.8 0.45 9.7E-06 52.8 11.3 110 443-563 50-164 (535)
184 cd02013 TPP_Xsc_like Thiamine 93.8 0.99 2.1E-05 42.9 12.2 116 77-194 58-180 (196)
185 COG0028 IlvB Thiamine pyrophos 93.8 0.35 7.6E-06 53.5 10.3 108 443-563 50-161 (550)
186 TIGR01504 glyox_carbo_lig glyo 93.8 0.42 9.1E-06 53.6 11.0 110 443-564 52-165 (588)
187 PRK07525 sulfoacetaldehyde ace 93.6 0.67 1.4E-05 52.1 12.3 118 430-563 44-164 (588)
188 PRK09259 putative oxalyl-CoA d 93.5 0.45 9.8E-06 53.2 10.7 120 430-563 48-171 (569)
189 PRK07789 acetolactate synthase 93.5 0.39 8.4E-06 54.3 10.2 118 430-563 70-191 (612)
190 cd02004 TPP_BZL_OCoD_HPCL Thia 93.5 0.41 8.8E-06 44.4 8.7 109 77-193 53-172 (172)
191 PRK07418 acetolactate synthase 93.5 0.44 9.5E-06 53.8 10.5 118 430-563 61-182 (616)
192 PRK08322 acetolactate synthase 93.4 0.37 8.1E-06 53.6 9.8 108 443-563 49-160 (547)
193 PRK08617 acetolactate synthase 93.4 0.38 8.2E-06 53.6 9.8 118 430-563 43-164 (552)
194 PRK11269 glyoxylate carboligas 93.4 0.48 1E-05 53.3 10.6 119 430-563 43-165 (591)
195 TIGR03254 oxalate_oxc oxalyl-C 93.4 0.48 1.1E-05 52.8 10.6 120 430-563 41-164 (554)
196 PRK09107 acetolactate synthase 93.4 0.41 8.9E-06 53.8 10.0 120 429-564 49-172 (595)
197 PRK06457 pyruvate dehydrogenas 93.3 0.41 8.8E-06 53.3 9.9 118 430-563 40-160 (549)
198 cd07036 TPP_PYR_E1-PDHc-beta_l 93.3 4.6 9.9E-05 37.2 15.2 147 30-191 4-166 (167)
199 PRK06466 acetolactate synthase 93.3 0.86 1.9E-05 51.0 12.4 119 429-563 42-164 (574)
200 PLN02790 transketolase 93.2 1.9 4.1E-05 49.0 14.9 115 68-194 395-513 (654)
201 PRK07979 acetolactate synthase 93.2 0.42 9.1E-06 53.5 9.7 120 429-564 42-165 (574)
202 PRK07586 hypothetical protein; 93.2 0.46 9.9E-06 52.5 9.9 109 443-564 50-162 (514)
203 cd07034 TPP_PYR_PFOR_IOR-alpha 93.2 0.41 8.9E-06 43.7 8.1 106 442-560 51-158 (160)
204 PRK06725 acetolactate synthase 93.1 0.42 9.1E-06 53.4 9.5 119 430-564 53-175 (570)
205 PTZ00089 transketolase; Provis 93.1 0.77 1.7E-05 52.1 11.6 116 68-194 406-523 (661)
206 PRK08978 acetolactate synthase 93.0 0.37 8E-06 53.6 8.9 109 443-564 49-161 (548)
207 cd02006 TPP_Gcl Thiamine pyrop 92.9 1.3 2.7E-05 42.3 11.3 115 77-194 62-195 (202)
208 PRK12754 transketolase; Review 92.9 2 4.3E-05 48.6 14.5 116 68-194 405-522 (663)
209 PRK06456 acetolactate synthase 92.9 0.53 1.2E-05 52.7 10.0 119 430-564 44-166 (572)
210 TIGR02418 acolac_catab acetola 92.8 0.97 2.1E-05 50.2 11.9 118 430-563 37-158 (539)
211 cd02005 TPP_PDC_IPDC Thiamine 92.8 3 6.6E-05 39.0 13.5 111 79-194 57-175 (183)
212 PRK06965 acetolactate synthase 92.8 1.3 2.8E-05 49.7 12.9 119 429-563 59-181 (587)
213 PRK12753 transketolase; Review 92.7 0.91 2E-05 51.5 11.6 116 68-194 405-522 (663)
214 PRK08199 thiamine pyrophosphat 92.7 0.61 1.3E-05 52.0 10.1 118 430-563 47-168 (557)
215 PRK06276 acetolactate synthase 92.7 0.58 1.2E-05 52.6 9.9 108 443-563 49-160 (586)
216 PRK08155 acetolactate synthase 92.7 0.58 1.2E-05 52.3 9.9 118 430-563 52-173 (564)
217 TIGR00118 acolac_lg acetolacta 92.5 1.5 3.2E-05 49.0 12.9 118 430-563 40-161 (558)
218 cd02001 TPP_ComE_PpyrDC Thiami 92.5 4.4 9.5E-05 36.9 13.7 103 80-193 50-155 (157)
219 PRK05858 hypothetical protein; 92.5 0.72 1.6E-05 51.3 10.2 118 430-563 43-164 (542)
220 cd02010 TPP_ALS Thiamine pyrop 92.4 0.63 1.4E-05 43.4 8.3 110 80-194 56-171 (177)
221 TIGR02720 pyruv_oxi_spxB pyruv 92.2 0.65 1.4E-05 52.0 9.6 118 430-563 39-159 (575)
222 PF02779 Transket_pyr: Transke 92.2 0.71 1.5E-05 43.1 8.4 117 68-194 51-174 (178)
223 cd02009 TPP_SHCHC_synthase Thi 92.1 3.1 6.7E-05 38.6 12.6 111 77-193 56-175 (175)
224 PRK06112 acetolactate synthase 92.1 0.73 1.6E-05 51.7 9.8 118 430-563 50-171 (578)
225 PRK06882 acetolactate synthase 92.1 0.69 1.5E-05 51.8 9.6 118 430-563 43-164 (574)
226 cd02761 MopB_FmdB-FwdB The Mop 92.1 0.43 9.3E-06 51.0 7.6 114 221-340 56-181 (415)
227 PRK08979 acetolactate synthase 92.0 0.67 1.5E-05 51.9 9.4 119 430-564 43-165 (572)
228 PRK12474 hypothetical protein; 92.0 0.87 1.9E-05 50.3 10.1 119 430-564 44-166 (518)
229 PRK08266 hypothetical protein; 91.9 2.4 5.1E-05 47.2 13.6 121 430-563 44-168 (542)
230 PRK06048 acetolactate synthase 91.8 0.68 1.5E-05 51.7 9.1 108 443-563 56-167 (561)
231 TIGR03457 sulphoacet_xsc sulfo 91.8 0.75 1.6E-05 51.6 9.4 119 430-564 40-161 (579)
232 cd02008 TPP_IOR_alpha Thiamine 91.7 1.7 3.7E-05 40.5 10.4 110 79-191 58-175 (178)
233 PRK07282 acetolactate synthase 91.7 0.71 1.5E-05 51.6 9.0 119 430-564 49-171 (566)
234 TIGR03181 PDH_E1_alph_x pyruva 91.6 1.1 2.3E-05 46.6 9.7 112 77-194 131-247 (341)
235 PRK06154 hypothetical protein; 91.5 1.1 2.4E-05 50.0 10.4 117 430-563 55-176 (565)
236 cd02003 TPP_IolD Thiamine pyro 91.5 0.6 1.3E-05 44.7 7.2 146 44-194 17-185 (205)
237 PRK08527 acetolactate synthase 91.3 0.86 1.9E-05 50.9 9.3 108 443-563 52-163 (563)
238 PRK09124 pyruvate dehydrogenas 91.3 0.95 2.1E-05 50.7 9.6 108 443-563 52-162 (574)
239 PRK07064 hypothetical protein; 91.1 1.6 3.5E-05 48.6 11.1 111 443-563 52-166 (544)
240 CHL00099 ilvB acetohydroxyacid 90.9 1 2.2E-05 50.6 9.4 118 430-563 52-173 (585)
241 cd07036 TPP_PYR_E1-PDHc-beta_l 90.9 2 4.4E-05 39.6 9.7 99 443-559 55-164 (167)
242 PRK06546 pyruvate dehydrogenas 90.9 1 2.2E-05 50.5 9.2 108 443-563 52-162 (578)
243 PRK08327 acetolactate synthase 90.7 1.1 2.3E-05 50.2 9.4 124 431-563 52-181 (569)
244 PRK08273 thiamine pyrophosphat 90.7 1.2 2.5E-05 50.2 9.6 119 430-564 43-165 (597)
245 PRK06163 hypothetical protein; 90.6 2.3 4.9E-05 40.6 10.1 108 78-194 63-174 (202)
246 TIGR03297 Ppyr-DeCO2ase phosph 90.6 0.79 1.7E-05 47.9 7.5 111 441-561 35-151 (361)
247 PRK11866 2-oxoacid ferredoxin 90.1 2.8 6.1E-05 42.1 10.6 154 29-191 18-190 (279)
248 COG2609 AceE Pyruvate dehydrog 89.7 1.2 2.6E-05 49.0 8.1 82 438-524 191-287 (887)
249 PRK12571 1-deoxy-D-xylulose-5- 89.6 14 0.00031 41.8 17.0 152 27-194 319-480 (641)
250 TIGR00173 menD 2-succinyl-5-en 89.5 1.1 2.4E-05 48.3 7.9 119 430-564 39-167 (432)
251 cd02015 TPP_AHAS Thiamine pyro 89.5 8.1 0.00018 36.2 12.9 112 77-194 55-175 (186)
252 cd00568 TPP_enzymes Thiamine p 89.3 1.7 3.7E-05 39.7 8.0 109 78-191 52-167 (168)
253 PRK05778 2-oxoglutarate ferred 89.2 4.8 0.0001 40.9 11.6 156 28-193 28-203 (301)
254 CHL00144 odpB pyruvate dehydro 89.1 12 0.00027 38.5 14.9 152 27-193 4-175 (327)
255 PRK07092 benzoylformate decarb 89.0 1.8 3.9E-05 47.9 9.3 120 430-564 49-172 (530)
256 cd03375 TPP_OGFOR Thiamine pyr 88.9 6.6 0.00014 37.1 11.8 155 28-194 9-185 (193)
257 cd07033 TPP_PYR_DXS_TK_like Py 88.9 3.3 7.1E-05 37.7 9.4 103 443-560 50-154 (156)
258 cd02000 TPP_E1_PDC_ADC_BCADC T 88.3 2.2 4.9E-05 43.2 8.7 100 91-196 127-231 (293)
259 PRK13012 2-oxoacid dehydrogena 88.3 25 0.00055 41.1 17.9 177 65-265 573-761 (896)
260 PLN02582 1-deoxy-D-xylulose-5- 88.1 12 0.00026 42.5 15.0 153 27-194 356-517 (677)
261 PRK09212 pyruvate dehydrogenas 88.0 35 0.00076 35.2 20.9 239 27-312 4-262 (327)
262 PRK05899 transketolase; Review 88.0 4.8 0.0001 45.6 12.0 116 67-194 368-487 (624)
263 TIGR03394 indol_phenyl_DC indo 87.7 2.3 5E-05 47.1 9.1 108 80-194 411-522 (535)
264 cd02002 TPP_BFDC Thiamine pyro 87.7 8.7 0.00019 35.5 11.7 137 50-191 25-177 (178)
265 PF00676 E1_dh: Dehydrogenase 87.6 2.1 4.5E-05 43.6 8.0 104 83-192 112-224 (300)
266 PRK11892 pyruvate dehydrogenas 87.6 13 0.00028 40.4 14.2 147 26-189 141-309 (464)
267 cd02014 TPP_POX Thiamine pyrop 87.6 22 0.00049 32.9 14.4 113 77-194 56-174 (178)
268 PF02779 Transket_pyr: Transke 87.5 7.6 0.00016 36.1 11.2 105 443-561 59-171 (178)
269 PRK05444 1-deoxy-D-xylulose-5- 87.3 4.1 9E-05 45.6 10.8 152 27-194 279-440 (580)
270 PRK09628 oorB 2-oxoglutarate-a 87.1 18 0.00039 36.3 14.1 152 30-193 28-201 (277)
271 TIGR00204 dxs 1-deoxy-D-xylulo 87.0 17 0.00036 41.2 15.3 152 27-194 310-471 (617)
272 PRK09444 pntB pyridine nucleot 86.7 0.55 1.2E-05 49.4 3.2 89 224-312 295-391 (462)
273 TIGR03182 PDH_E1_alph_y pyruva 86.6 3.7 8.1E-05 42.1 9.3 110 80-195 118-236 (315)
274 PLN02683 pyruvate dehydrogenas 86.1 28 0.00061 36.4 15.5 159 18-191 19-196 (356)
275 cd02018 TPP_PFOR Thiamine pyro 85.9 5.5 0.00012 39.0 9.7 88 104-195 103-205 (237)
276 cd01460 vWA_midasin VWA_Midasi 85.3 27 0.00059 34.8 14.2 85 459-548 166-256 (266)
277 cd03372 TPP_ComE Thiamine pyro 85.1 6.5 0.00014 36.7 9.4 104 79-194 49-156 (179)
278 TIGR03846 sulfopy_beta sulfopy 84.5 6.6 0.00014 36.7 9.1 106 78-194 48-157 (181)
279 TIGR03336 IOR_alpha indolepyru 84.2 5.8 0.00013 44.6 10.1 115 80-195 411-532 (595)
280 PRK11869 2-oxoacid ferredoxin 83.6 15 0.00034 36.8 11.7 153 29-191 19-191 (280)
281 PRK12315 1-deoxy-D-xylulose-5- 83.5 7.8 0.00017 43.4 10.6 150 27-194 278-438 (581)
282 PLN02573 pyruvate decarboxylas 83.3 17 0.00037 40.8 13.3 157 394-564 20-183 (578)
283 COG3958 Transketolase, C-termi 83.2 14 0.0003 36.9 10.7 158 26-194 6-169 (312)
284 PRK14138 NAD-dependent deacety 83.1 2.1 4.6E-05 42.2 5.3 68 295-362 171-241 (244)
285 COG1282 PntB NAD/NADP transhyd 83.1 1.2 2.6E-05 45.2 3.5 89 224-312 297-393 (463)
286 PRK07449 2-succinyl-5-enolpyru 82.7 11 0.00023 42.2 11.5 123 66-194 416-550 (568)
287 PRK00481 NAD-dependent deacety 82.7 2.5 5.3E-05 41.6 5.6 68 295-362 170-240 (242)
288 CHL00149 odpA pyruvate dehydro 82.7 9.2 0.0002 39.7 10.1 96 91-192 158-258 (341)
289 PRK05261 putative phosphoketol 82.4 98 0.0021 35.8 18.6 116 65-193 449-581 (785)
290 PLN02225 1-deoxy-D-xylulose-5- 81.5 28 0.00062 39.5 13.9 153 27-194 381-542 (701)
291 PF02233 PNTB: NAD(P) transhyd 81.4 0.73 1.6E-05 49.1 1.5 88 225-312 297-392 (463)
292 COG4032 Predicted thiamine-pyr 81.3 3.8 8.2E-05 36.0 5.4 102 445-558 55-159 (172)
293 cd02768 MopB_NADH-Q-OR-NuoG2 M 81.3 8.2 0.00018 40.7 9.4 112 221-338 71-189 (386)
294 TIGR03129 one_C_dehyd_B formyl 80.7 4.7 0.0001 43.1 7.4 113 221-340 62-187 (421)
295 cd03376 TPP_PFOR_porB_like Thi 80.6 30 0.00064 33.9 12.3 88 103-194 95-201 (235)
296 cd03371 TPP_PpyrDC Thiamine py 80.4 12 0.00025 35.3 9.1 108 77-194 53-164 (188)
297 COG1071 AcoA Pyruvate/2-oxoglu 78.8 17 0.00036 37.8 10.2 119 68-191 136-259 (358)
298 PRK11916 electron transfer fla 78.6 7.9 0.00017 39.5 7.8 111 238-363 196-311 (312)
299 TIGR03186 AKGDH_not_PDH alpha- 78.3 43 0.00094 39.2 14.3 182 65-265 560-753 (889)
300 PLN02234 1-deoxy-D-xylulose-5- 77.7 55 0.0012 37.0 14.7 153 27-194 357-518 (641)
301 PLN02374 pyruvate dehydrogenas 77.6 13 0.00028 39.9 9.3 96 91-192 224-324 (433)
302 PRK03363 fixB putative electro 77.6 7.7 0.00017 39.6 7.3 111 238-363 197-312 (313)
303 PTZ00408 NAD-dependent deacety 77.6 4.7 0.0001 39.7 5.6 69 294-362 164-235 (242)
304 PLN00022 electron transfer fla 77.1 7.8 0.00017 40.3 7.3 112 238-364 239-354 (356)
305 COG0075 Serine-pyruvate aminot 76.9 12 0.00026 39.3 8.6 65 458-545 56-127 (383)
306 cd02752 MopB_Formate-Dh-Na-lik 75.7 2.8 6E-05 47.4 3.9 115 221-340 73-212 (649)
307 PRK11867 2-oxoglutarate ferred 75.5 15 0.00033 37.1 8.8 159 28-194 27-203 (286)
308 PLN02980 2-oxoglutarate decarb 75.4 9.7 0.00021 48.2 8.9 117 430-562 340-466 (1655)
309 cd01408 SIRT1 SIRT1: Eukaryoti 75.4 3.7 8E-05 40.2 4.3 64 295-358 168-235 (235)
310 PRK10886 DnaA initiator-associ 75.1 28 0.0006 33.0 10.0 102 27-128 28-149 (196)
311 cd02750 MopB_Nitrate-R-NarG-li 74.9 5.8 0.00013 43.1 6.1 116 221-340 87-212 (461)
312 COG1029 FwdB Formylmethanofura 74.5 19 0.0004 37.0 8.8 111 222-338 232-370 (429)
313 PRK05333 NAD-dependent deacety 74.1 5.7 0.00012 40.1 5.4 69 295-363 207-278 (285)
314 cd02773 MopB_Res-Cmplx1_Nad11 74.1 11 0.00024 39.6 7.9 110 221-338 70-186 (375)
315 cd01412 SIRT5_Af1_CobB SIRT5_A 73.5 5.3 0.00011 38.8 4.8 64 295-358 157-223 (224)
316 TIGR03393 indolpyr_decarb indo 72.7 19 0.00041 40.0 9.6 111 80-194 412-528 (539)
317 PRK11892 pyruvate dehydrogenas 72.5 23 0.00051 38.3 9.8 98 443-558 200-308 (464)
318 smart00861 Transket_pyr Transk 71.8 33 0.00072 31.3 9.6 105 443-560 60-164 (168)
319 PLN02683 pyruvate dehydrogenas 71.8 43 0.00093 35.0 11.3 100 442-559 84-194 (356)
320 cd01453 vWA_transcription_fact 71.7 35 0.00076 31.8 9.8 88 439-548 86-179 (183)
321 TIGR02177 PorB_KorB 2-oxoacid: 71.7 27 0.00059 35.2 9.5 155 29-193 12-186 (287)
322 PRK11864 2-ketoisovalerate fer 70.7 47 0.001 33.7 10.9 123 65-191 63-205 (300)
323 cd02774 MopB_Res-Cmplx1_Nad11- 70.7 17 0.00038 38.1 8.2 111 221-337 71-188 (366)
324 cd02772 MopB_NDH-1_NuoG2 MopB_ 70.5 11 0.00023 40.3 6.8 112 221-338 71-192 (414)
325 PRK11865 pyruvate ferredoxin o 69.8 65 0.0014 32.7 11.7 86 40-127 37-130 (299)
326 CHL00144 odpB pyruvate dehydro 69.5 32 0.0007 35.5 9.7 102 443-559 62-171 (327)
327 PRK09212 pyruvate dehydrogenas 69.4 46 0.001 34.3 10.9 99 443-558 62-170 (327)
328 cd00368 Molybdopterin-Binding 69.2 3.8 8.3E-05 42.9 3.0 116 221-340 73-198 (374)
329 TIGR03479 DMSO_red_II_alp DMSO 69.0 14 0.0003 44.0 7.8 116 221-340 141-266 (912)
330 TIGR01973 NuoG NADH-quinone ox 67.6 15 0.00033 41.4 7.5 114 220-340 287-405 (603)
331 COG0541 Ffh Signal recognition 67.3 14 0.0003 39.2 6.4 48 222-269 114-161 (451)
332 PRK13936 phosphoheptose isomer 67.2 46 0.001 31.5 9.6 100 28-127 31-150 (197)
333 cd01413 SIR2_Af2 SIR2_Af2: Arc 66.1 5.8 0.00012 38.5 3.3 46 295-340 164-211 (222)
334 COG2025 FixB Electron transfer 64.8 23 0.00049 36.1 7.3 111 239-364 198-312 (313)
335 PTZ00182 3-methyl-2-oxobutanat 64.2 62 0.0013 33.8 10.7 99 443-558 93-201 (355)
336 PF13519 VWA_2: von Willebrand 63.7 29 0.00064 31.1 7.5 89 439-546 80-171 (172)
337 TIGR01591 Fdh-alpha formate de 63.4 12 0.00026 42.7 5.8 114 221-339 70-196 (671)
338 PTZ00409 Sir2 (Silent Informat 63.4 7.5 0.00016 38.9 3.6 70 294-364 191-264 (271)
339 cd01409 SIRT4 SIRT4: Eukaryoti 63.3 7.2 0.00016 38.8 3.4 46 295-340 197-244 (260)
340 cd02767 MopB_ydeP The MopB_yde 62.9 13 0.00028 41.7 5.6 114 220-338 82-203 (574)
341 TIGR00300 conserved hypothetic 61.6 5.9 0.00013 41.0 2.4 103 255-363 296-405 (407)
342 cd01410 SIRT7 SIRT7: Eukaryoti 61.3 8.3 0.00018 36.9 3.4 46 295-340 148-195 (206)
343 PRK07119 2-ketoisovalerate fer 60.9 63 0.0014 33.7 10.1 50 443-494 59-108 (352)
344 cd01411 SIR2H SIR2H: Uncharact 60.3 7.7 0.00017 37.7 3.0 46 295-340 164-210 (225)
345 PRK00414 gmhA phosphoheptose i 60.1 84 0.0018 29.6 10.0 101 26-127 30-150 (192)
346 cd02007 TPP_DXS Thiamine pyrop 58.1 68 0.0015 30.3 8.9 87 91-191 98-188 (195)
347 PLN02269 Pyruvate dehydrogenas 58.0 78 0.0017 33.2 10.1 114 70-191 140-257 (362)
348 COG0777 AccD Acetyl-CoA carbox 58.0 17 0.00036 35.9 4.7 93 397-498 99-210 (294)
349 TIGR01701 Fdhalpha-like oxidor 57.2 18 0.00039 41.8 5.8 112 221-337 118-237 (743)
350 PRK13938 phosphoheptose isomer 57.0 73 0.0016 30.2 8.9 100 27-127 32-152 (196)
351 cd02012 TPP_TK Thiamine pyroph 56.6 84 0.0018 31.0 9.8 91 96-195 133-229 (255)
352 PRK09130 NADH dehydrogenase su 56.5 23 0.00049 40.6 6.3 110 220-337 288-404 (687)
353 PF01855 POR_N: Pyruvate flavo 56.3 25 0.00054 34.3 5.7 102 443-560 47-152 (230)
354 COG0552 FtsY Signal recognitio 56.0 21 0.00046 36.4 5.3 47 222-268 153-199 (340)
355 KOG1905 Class IV sirtuins (SIR 55.7 43 0.00092 33.5 7.1 76 294-369 208-286 (353)
356 cd02753 MopB_Formate-Dh-H Form 55.5 21 0.00046 39.3 5.8 115 221-340 71-198 (512)
357 PF09936 Methyltrn_RNA_4: SAM- 54.6 36 0.00079 31.5 6.1 65 225-308 90-158 (185)
358 PRK08659 2-oxoglutarate ferred 54.5 95 0.0021 32.7 10.2 51 443-495 59-109 (376)
359 TIGR00853 pts-lac PTS system, 54.5 28 0.0006 28.7 4.9 33 235-267 3-35 (95)
360 PRK09939 putative oxidoreducta 54.3 13 0.00028 42.9 4.0 114 220-337 126-247 (759)
361 PRK13937 phosphoheptose isomer 54.1 98 0.0021 29.0 9.3 102 27-128 25-146 (188)
362 PRK09405 aceE pyruvate dehydro 53.9 4.2E+02 0.0091 31.3 15.8 178 64-265 564-756 (891)
363 cd05007 SIS_Etherase N-acetylm 53.4 75 0.0016 31.5 8.7 102 27-128 36-158 (257)
364 PRK09129 NADH dehydrogenase su 53.1 61 0.0013 37.8 9.3 113 221-339 289-411 (776)
365 KOG4166 Thiamine pyrophosphate 52.7 87 0.0019 33.0 9.0 102 447-563 144-251 (675)
366 PRK13761 hypothetical protein; 52.6 35 0.00075 32.7 5.7 47 221-268 53-99 (248)
367 cd02016 TPP_E1_OGDC_like Thiam 52.5 43 0.00093 33.4 6.7 95 91-191 141-244 (265)
368 PRK13685 hypothetical protein; 52.3 91 0.002 32.1 9.5 83 458-548 194-287 (326)
369 cd02766 MopB_3 The MopB_3 CD i 52.2 10 0.00022 41.7 2.6 115 221-340 75-199 (501)
370 TIGR00441 gmhA phosphoheptose 51.9 99 0.0021 27.8 8.7 97 31-127 2-118 (154)
371 cd05569 PTS_IIB_fructose PTS_I 51.9 46 0.001 27.4 5.9 59 240-313 5-64 (96)
372 COG3960 Glyoxylate carboligase 51.3 28 0.00062 35.1 5.2 50 509-563 113-165 (592)
373 cd01407 SIR2-fam SIR2 family o 50.9 13 0.00027 36.0 2.7 46 295-340 160-207 (218)
374 PF02603 Hpr_kinase_N: HPr Ser 50.5 17 0.00037 31.7 3.3 47 223-272 68-114 (127)
375 COG2247 LytB Putative cell wal 48.8 47 0.001 33.6 6.3 55 238-312 30-85 (337)
376 cd05564 PTS_IIB_chitobiose_lic 48.5 44 0.00096 27.5 5.3 31 237-267 1-31 (96)
377 COG1915 Uncharacterized conser 48.5 5.1 0.00011 39.8 -0.4 100 260-365 300-406 (415)
378 TIGR01553 formate-DH-alph form 47.7 23 0.00051 42.4 4.8 115 221-339 125-262 (1009)
379 COG1154 Dxs Deoxyxylulose-5-ph 47.0 1.1E+02 0.0024 34.0 9.2 105 442-561 368-474 (627)
380 PF04951 Peptidase_M55: D-amin 46.9 9 0.00019 38.0 1.0 146 27-182 36-206 (265)
381 COG3958 Transketolase, C-termi 46.0 3.3E+02 0.0072 27.5 12.0 108 444-568 61-171 (312)
382 PF00448 SRP54: SRP54-type pro 46.0 33 0.00072 32.4 4.7 46 223-268 16-61 (196)
383 PF13580 SIS_2: SIS domain; PD 45.9 1.4E+02 0.0029 26.3 8.4 97 26-123 21-138 (138)
384 cd00368 Molybdopterin-Binding 45.4 1.1E+02 0.0025 31.7 9.2 88 222-317 230-321 (374)
385 COG0846 SIR2 NAD-dependent pro 44.7 33 0.00072 33.8 4.6 69 294-362 174-245 (250)
386 cd01455 vWA_F11C1-5a_type Von 44.2 1.6E+02 0.0034 27.8 8.8 72 457-549 111-187 (191)
387 TIGR00239 2oxo_dh_E1 2-oxoglut 43.2 1.2E+02 0.0027 35.8 9.5 166 20-191 220-447 (929)
388 PRK09860 putative alcohol dehy 42.6 75 0.0016 33.5 7.3 43 224-266 18-62 (383)
389 PRK07860 NADH dehydrogenase su 42.6 45 0.00098 39.0 6.1 113 220-338 295-417 (797)
390 PRK13398 3-deoxy-7-phosphohept 42.5 1.3E+02 0.0027 30.1 8.4 52 221-272 39-100 (266)
391 PF10087 DUF2325: Uncharacteri 41.8 78 0.0017 26.0 5.8 52 239-309 2-55 (97)
392 cd08193 HVD 5-hydroxyvalerate 41.7 1E+02 0.0022 32.5 8.0 76 224-311 13-92 (376)
393 PRK13982 bifunctional SbtC-lik 41.5 1.2E+02 0.0027 32.9 8.7 90 392-492 234-341 (475)
394 COG1419 FlhF Flagellar GTP-bin 41.1 72 0.0015 33.7 6.5 67 224-308 219-287 (407)
395 TIGR01012 Sa_S2_E_A ribosomal 41.1 1.4E+02 0.0031 28.2 8.0 74 222-314 46-120 (196)
396 COG0299 PurN Folate-dependent 41.0 78 0.0017 29.8 6.1 73 458-558 2-83 (200)
397 cd05565 PTS_IIB_lactose PTS_II 40.3 51 0.0011 27.4 4.4 31 238-268 3-33 (99)
398 PTZ00254 40S ribosomal protein 39.9 1.1E+02 0.0023 30.1 7.2 73 223-314 56-130 (249)
399 cd02754 MopB_Nitrate-R-NapA-li 39.9 29 0.00062 38.8 3.8 115 221-340 72-201 (565)
400 cd00296 SIR2 SIR2 superfamily 39.7 24 0.00052 33.9 2.8 46 295-340 162-209 (222)
401 cd05006 SIS_GmhA Phosphoheptos 39.6 2.3E+02 0.0049 26.0 9.3 101 27-127 20-140 (177)
402 cd08190 HOT Hydroxyacid-oxoaci 39.4 99 0.0021 33.0 7.6 43 225-267 11-55 (414)
403 PF00465 Fe-ADH: Iron-containi 39.2 27 0.0006 36.5 3.3 75 225-311 11-87 (366)
404 PF00766 ETF_alpha: Electron t 38.8 33 0.00071 27.7 2.9 64 237-312 8-73 (86)
405 COG1701 Uncharacterized protei 38.8 66 0.0014 30.5 5.2 47 221-268 55-101 (256)
406 cd08185 Fe-ADH1 Iron-containin 38.7 97 0.0021 32.6 7.4 44 224-267 13-58 (380)
407 PF02302 PTS_IIB: PTS system, 38.7 44 0.00096 26.7 3.8 53 237-309 1-54 (90)
408 TIGR02638 lactal_redase lactal 38.6 89 0.0019 32.9 7.1 44 224-267 16-61 (379)
409 cd08194 Fe-ADH6 Iron-containin 38.5 1E+02 0.0022 32.4 7.5 76 224-311 10-89 (375)
410 cd02751 MopB_DMSOR-like The Mo 38.2 49 0.0011 37.3 5.4 119 221-340 78-219 (609)
411 PF07905 PucR: Purine cataboli 38.1 68 0.0015 27.7 5.1 45 224-268 60-104 (123)
412 cd08663 DAP_dppA_1 Peptidase M 38.0 56 0.0012 32.5 5.0 153 18-181 27-205 (266)
413 TIGR02717 AcCoA-syn-alpha acet 38.0 5.5E+02 0.012 27.7 14.8 44 225-271 390-434 (447)
414 PRK02947 hypothetical protein; 37.9 1.3E+02 0.0028 29.6 7.6 98 27-126 27-144 (246)
415 cd08769 DAP_dppA_2 Peptidase M 37.6 20 0.00043 35.8 1.8 145 27-181 36-205 (270)
416 COG1938 Archaeal enzymes of AT 37.2 2.3E+02 0.0049 27.8 8.9 90 27-128 93-182 (244)
417 COG0021 TktA Transketolase [Ca 37.1 2.8E+02 0.0061 31.1 10.5 156 26-192 356-520 (663)
418 cd02072 Glm_B12_BD B12 binding 36.8 57 0.0012 28.6 4.3 27 33-60 100-126 (128)
419 PRK04020 rps2P 30S ribosomal p 36.7 2.1E+02 0.0046 27.3 8.5 73 223-314 53-126 (204)
420 COG1454 EutG Alcohol dehydroge 36.5 1.5E+02 0.0032 31.3 8.0 74 224-310 16-94 (377)
421 PRK15454 ethanol dehydrogenase 36.3 1E+02 0.0023 32.6 7.2 44 224-267 36-81 (395)
422 cd08192 Fe-ADH7 Iron-containin 36.2 1.4E+02 0.003 31.3 8.1 76 224-311 11-90 (370)
423 PRK08366 vorA 2-ketoisovalerat 36.0 63 0.0014 34.2 5.3 47 443-491 60-106 (390)
424 PF06506 PrpR_N: Propionate ca 35.7 1.2E+02 0.0025 28.0 6.6 88 454-549 73-165 (176)
425 COG1208 GCD1 Nucleoside-diphos 35.5 2.1E+02 0.0045 29.9 9.1 63 7-73 15-82 (358)
426 COG0731 Fe-S oxidoreductases [ 35.4 3.6E+02 0.0079 27.3 10.3 40 457-496 79-120 (296)
427 cd08189 Fe-ADH5 Iron-containin 35.2 1.1E+02 0.0025 32.0 7.3 44 224-267 13-58 (374)
428 cd02974 AhpF_NTD_N Alkyl hydro 35.1 1.1E+02 0.0024 25.1 5.6 44 539-583 5-48 (94)
429 KOG1185 Thiamine pyrophosphate 35.1 1.3E+02 0.0028 32.4 7.3 155 391-563 14-173 (571)
430 cd01465 vWA_subgroup VWA subgr 34.8 2.6E+02 0.0057 24.9 8.9 85 439-543 75-169 (170)
431 PRK10624 L-1,2-propanediol oxi 34.8 1.2E+02 0.0025 32.1 7.2 44 224-267 17-62 (382)
432 cd08181 PPD-like 1,3-propanedi 34.7 1.2E+02 0.0027 31.5 7.4 43 225-267 14-58 (357)
433 cd08191 HHD 6-hydroxyhexanoate 34.3 1.4E+02 0.0029 31.6 7.6 43 225-267 11-54 (386)
434 TIGR03012 sulf_tusD_dsrE sulfu 34.1 2.6E+02 0.0056 24.3 8.1 87 221-309 16-127 (127)
435 cd08176 LPO Lactadehyde:propan 34.0 1.5E+02 0.0032 31.2 7.9 76 224-311 15-94 (377)
436 TIGR00274 N-acetylmuramic acid 33.8 1.8E+02 0.0039 29.4 8.0 100 28-127 45-165 (291)
437 cd08170 GlyDH Glycerol dehydro 33.2 1.5E+02 0.0033 30.7 7.8 40 226-266 12-52 (351)
438 cd02774 MopB_Res-Cmplx1_Nad11- 33.0 47 0.001 34.8 3.8 38 226-263 212-253 (366)
439 cd08188 Fe-ADH4 Iron-containin 32.5 1.4E+02 0.0029 31.5 7.2 44 224-267 15-60 (377)
440 cd08178 AAD_C C-terminal alcoh 32.4 1.1E+02 0.0023 32.6 6.5 37 231-267 17-53 (398)
441 KOG2487 RNA polymerase II tran 32.3 1.4E+02 0.003 29.5 6.5 68 459-548 170-239 (314)
442 cd05005 SIS_PHI Hexulose-6-pho 32.3 2.5E+02 0.0054 25.8 8.3 46 221-268 19-64 (179)
443 PRK05333 NAD-dependent deacety 32.2 46 0.001 33.6 3.5 39 221-271 5-43 (285)
444 COG3925 N-terminal domain of t 32.0 48 0.001 27.0 2.7 31 301-337 39-69 (103)
445 PRK05441 murQ N-acetylmuramic 31.8 2.6E+02 0.0057 28.3 8.9 101 28-128 50-171 (299)
446 KOG0081 GTPase Rab27, small G 31.6 76 0.0016 28.8 4.2 39 235-273 122-165 (219)
447 PRK15482 transcriptional regul 31.4 1.2E+02 0.0026 30.4 6.4 69 221-309 121-189 (285)
448 PRK00771 signal recognition pa 31.3 1.2E+02 0.0026 32.6 6.7 47 223-269 110-156 (437)
449 PRK05647 purN phosphoribosylgl 31.1 1.2E+02 0.0025 28.9 5.9 37 458-494 3-39 (200)
450 KOG0450 2-oxoglutarate dehydro 30.9 93 0.002 34.9 5.6 94 459-564 403-508 (1017)
451 PRK11557 putative DNA-binding 30.7 1.2E+02 0.0026 30.2 6.3 69 221-309 114-182 (278)
452 PRK09330 cell division protein 30.7 1.4E+02 0.003 31.6 6.8 82 221-310 84-167 (384)
453 PRK05579 bifunctional phosphop 30.5 2.5E+02 0.0055 29.8 8.9 95 392-497 169-278 (399)
454 cd08186 Fe-ADH8 Iron-containin 30.5 1.5E+02 0.0032 31.3 7.1 33 235-267 26-59 (383)
455 TIGR03127 RuMP_HxlB 6-phospho 30.5 2.4E+02 0.0053 25.8 7.9 89 30-128 20-112 (179)
456 cd08187 BDH Butanol dehydrogen 30.4 1.9E+02 0.0041 30.5 8.0 42 226-267 18-61 (382)
457 TIGR00655 PurU formyltetrahydr 30.1 1.2E+02 0.0025 30.6 6.0 35 457-494 85-122 (280)
458 PRK04175 rpl7ae 50S ribosomal 30.0 1.4E+02 0.0031 25.8 5.7 47 225-271 35-81 (122)
459 TIGR01105 galF UTP-glucose-1-p 30.0 5.9E+02 0.013 25.7 11.2 51 7-61 17-68 (297)
460 PF07085 DRTGG: DRTGG domain; 30.0 60 0.0013 27.0 3.3 33 236-272 62-94 (105)
461 PRK10586 putative oxidoreducta 29.9 2.1E+02 0.0045 30.0 8.0 40 224-264 21-62 (362)
462 cd08551 Fe-ADH iron-containing 29.4 1.7E+02 0.0037 30.6 7.4 76 224-311 10-89 (370)
463 cd02757 MopB_Arsenate-R This C 29.3 48 0.001 36.7 3.3 111 221-339 81-205 (523)
464 cd01461 vWA_interalpha_trypsin 29.2 4.1E+02 0.0089 23.6 9.4 68 457-545 99-170 (171)
465 cd02771 MopB_NDH-1_NuoG2-N7 Mo 29.1 1E+02 0.0022 33.4 5.9 88 221-316 71-159 (472)
466 COG1707 ACT domain-containing 29.0 1.5E+02 0.0032 27.1 5.6 55 222-278 126-182 (218)
467 cd02759 MopB_Acetylene-hydrata 28.8 39 0.00084 36.9 2.5 113 222-339 76-202 (477)
468 COG1737 RpiR Transcriptional r 28.7 1.2E+02 0.0026 30.4 5.9 69 221-309 116-184 (281)
469 PF02146 SIR2: Sir2 family; I 28.6 51 0.0011 30.5 2.9 20 295-314 156-175 (178)
470 cd02762 MopB_1 The MopB_1 CD i 28.5 90 0.0019 34.6 5.3 41 300-340 154-204 (539)
471 cd05005 SIS_PHI Hexulose-6-pho 28.5 4.5E+02 0.0097 24.0 9.3 87 31-128 24-115 (179)
472 PRK13532 nitrate reductase cat 28.2 1.2E+02 0.0027 35.6 6.6 41 299-339 203-249 (830)
473 PTZ00410 NAD-dependent SIR2; P 28.1 56 0.0012 33.9 3.3 43 296-338 199-242 (349)
474 cd05710 SIS_1 A subgroup of th 28.1 1.5E+02 0.0033 25.3 5.6 42 87-128 45-87 (120)
475 cd02201 FtsZ_type1 FtsZ is a G 28.0 1.6E+02 0.0035 29.9 6.7 47 222-268 72-119 (304)
476 PRK13010 purU formyltetrahydro 27.7 1.1E+02 0.0025 30.8 5.4 75 457-560 94-175 (289)
477 PRK12570 N-acetylmuramic acid- 27.7 3.5E+02 0.0076 27.4 9.0 102 27-128 45-167 (296)
478 COG0567 SucA 2-oxoglutarate de 27.4 2E+02 0.0044 33.6 7.7 118 437-564 296-432 (906)
479 PLN02537 diaminopimelate decar 27.3 2.3E+02 0.0051 30.1 8.1 77 465-564 66-142 (410)
480 TIGR01580 narG respiratory nit 26.9 1.1E+02 0.0023 37.3 5.6 116 221-340 162-287 (1235)
481 PRK13602 putative ribosomal pr 26.8 1.7E+02 0.0037 23.3 5.2 44 226-270 17-60 (82)
482 cd06348 PBP1_ABC_ligand_bindin 26.8 1.6E+02 0.0035 30.1 6.6 55 225-282 56-110 (344)
483 COG3142 CutC Uncharacterized p 26.7 1E+02 0.0022 29.8 4.4 40 222-265 155-195 (241)
484 cd05009 SIS_GlmS_GlmD_2 SIS (S 26.7 2.1E+02 0.0046 25.1 6.6 94 31-126 4-100 (153)
485 TIGR03677 rpl7ae 50S ribosomal 26.6 1.8E+02 0.0039 25.0 5.7 44 226-269 32-75 (117)
486 PF06711 DUF1198: Protein of u 26.4 51 0.0011 29.1 2.2 31 238-268 11-41 (148)
487 COG2086 FixA Electron transfer 26.4 80 0.0017 31.3 3.9 42 229-270 104-145 (260)
488 COG5242 TFB4 RNA polymerase II 26.3 2.3E+02 0.0051 27.2 6.6 68 460-549 157-227 (296)
489 PRK13600 putative ribosomal pr 26.3 2.1E+02 0.0045 23.0 5.6 45 225-270 18-62 (84)
490 PRK11337 DNA-binding transcrip 26.3 4.2E+02 0.009 26.5 9.4 94 31-128 131-227 (292)
491 COG0825 AccA Acetyl-CoA carbox 26.2 91 0.002 31.2 4.2 43 235-277 105-164 (317)
492 TIGR03677 rpl7ae 50S ribosomal 26.1 4.2E+02 0.0091 22.7 10.2 87 471-581 29-116 (117)
493 cd05013 SIS_RpiR RpiR-like pro 25.9 1.4E+02 0.0031 25.4 5.2 43 224-268 2-44 (139)
494 TIGR00829 FRU PTS system, fruc 25.7 2E+02 0.0042 23.2 5.4 48 251-313 16-63 (85)
495 cd02771 MopB_NDH-1_NuoG2-N7 Mo 25.6 1.1E+02 0.0025 33.1 5.4 44 222-265 252-295 (472)
496 cd02770 MopB_DmsA-EC This CD ( 25.6 89 0.0019 35.3 4.7 110 222-335 81-206 (617)
497 PRK13601 putative L7Ae-like ri 25.3 1.9E+02 0.0042 23.1 5.2 43 227-270 15-57 (82)
498 PRK10411 DNA-binding transcrip 25.2 3.2E+02 0.0069 26.7 7.9 85 394-489 81-171 (240)
499 TIGR03710 OAFO_sf 2-oxoacid:ac 25.1 3.8E+02 0.0083 29.9 9.5 52 443-496 248-299 (562)
500 cd01822 Lysophospholipase_L1_l 25.1 2.3E+02 0.0049 25.5 6.7 50 221-270 86-142 (177)
No 1
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=3.4e-99 Score=832.21 Aligned_cols=564 Identities=86% Similarity=1.398 Sum_probs=471.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 105 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~ 105 (589)
.++++|+|++.|+++||+||||+||+++.+|+++|.+.++|++|.||||++|+|||+||+|+||.+||++|+|||++|++
T Consensus 15 ~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg~gv~~~t~GpG~~n~~ 94 (578)
T PLN02573 15 DATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVL 94 (578)
T ss_pred cccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhCCCeEEEecCccHHHHH
Confidence 48999999999999999999999999999999999655689999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCc
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gP 185 (589)
+|+++||.+++|||+|+|+.++...+++..+||.....++.++.++|+++|||+.++.+++++++.|++|++.|+++|||
T Consensus 95 ~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~gP 174 (578)
T PLN02573 95 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALKESKP 174 (578)
T ss_pred HHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999888777766677765434456678999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 186 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
|||+||.|++..+.+.....+.+....+......+.+..+++++++|.+||||+|++|.|++++++.+++.+|||++++|
T Consensus 175 V~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~P 254 (578)
T PLN02573 175 VYISVSCNLAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACKAFVELADASGYP 254 (578)
T ss_pred EEEEeehhhhcCccccccCCCCCcccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHHHHHHHHHHhCCC
Confidence 99999999977432111111111111111111133567899999999999999999999999999999999999999999
Q ss_pred eEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCc
Q 007800 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (589)
Q Consensus 266 v~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~ 345 (589)
|+||++|||+||++||+++|+++|..+++.+++++++||+||+||+++++..+..|..+.+..++||||.|+.++++...
T Consensus 255 V~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~ 334 (578)
T PLN02573 255 VAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIGNGPA 334 (578)
T ss_pred EEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEECCcce
Confidence 99999999999999999999987888899999999999999999999998888767655566789999999999973222
Q ss_pred cccccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccccc
Q 007800 346 LGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR 425 (589)
Q Consensus 346 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~ 425 (589)
....+++.+|++|.+.++.....|..|++.............+.++++.++++.|++.+++++++++|+|++++...++.
T Consensus 335 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iiv~D~G~~~~~~~~~~ 414 (578)
T PLN02573 335 FGCVLMKDFLEALAKRVKKNTTAYENYKRIFVPEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAETGDSWFNCQKLK 414 (578)
T ss_pred ECCcCHHHHHHHHHHHhhccccccccccccccCcccCCCCCCCCccCHHHHHHHHHHhcCCCCEEEEecccchhhHHhcc
Confidence 33347899999999888653222223322111111001112344699999999999999999999999999744334566
Q ss_pred ccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCC
Q 007800 426 LPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDG 505 (589)
Q Consensus 426 ~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~ 505 (589)
.+++..|+.+.++|+|||++|+|||+++|.|+++||+|+|||+|+|+++||+|++||++|+++||+||++|++.+..++.
T Consensus 415 ~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~ 494 (578)
T PLN02573 415 LPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDG 494 (578)
T ss_pred CCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEeeccc
Confidence 67777799999999999999999999999999999999999999999999999999999999999999999984333334
Q ss_pred CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHHhhhhcCCC
Q 007800 506 PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRP 585 (589)
Q Consensus 506 ~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (589)
.+.++.++||.++|++||...+++++.+|++.+||+++|+++++...++|.||||.+++++.++.+..+...++..++++
T Consensus 495 ~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lieV~v~~~~~~~~~~~~~~~~~~~~~~~ 574 (578)
T PLN02573 495 PYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRP 574 (578)
T ss_pred CccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEEEEcCcCCCCHHHHHHHHHHhhcccCC
Confidence 55666789999999999610001289999999999999999983126899999999999999999999999999999999
Q ss_pred CCCC
Q 007800 586 PNPQ 589 (589)
Q Consensus 586 ~~~~ 589 (589)
.|||
T Consensus 575 ~~~~ 578 (578)
T PLN02573 575 PNPQ 578 (578)
T ss_pred CCCC
Confidence 9987
No 2
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8.1e-99 Score=814.33 Aligned_cols=518 Identities=26% Similarity=0.395 Sum_probs=438.6
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++|+|++.|+++||++|||+||+.+++++|+|.++ +|++|.||||++|++||+||+|+||+ |||++|+|||++|+
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~-~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~ 79 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDS-GIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNL 79 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhC-CCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHH
Confidence 37899999999999999999999999999999999986 99999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++|+.|++|||+||||.++...+++ .+| ..|+..|++|+|||++++.+++++++.+++||++|.++ |
T Consensus 80 ~tgla~A~~d~~Pll~itGqv~~~~~g~~-----afQ---e~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrp 151 (550)
T COG0028 80 LTGLADAYMDSVPLLAITGQVPTSLIGTD-----AFQ---EVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRP 151 (550)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccccCcc-----hhh---hcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999977776 333 34889999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+.....+... ......+...+. +++++++++|.+||||+|++|+|+.++++.+++++|+|+++
T Consensus 152 Gpv~i~iP~Dv~~~~~~~~~~~~~--~~~~~~p~~~~~-~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~ 228 (550)
T COG0028 152 GPVVVDLPKDVLAAEAEEPGPEPA--ILPPYRPAPPPP-EAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLG 228 (550)
T ss_pred ceEEEEcChhHhhccccccccccc--ccccCCCCCCcH-HHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHC
Confidence 999999999998753222111111 111111111222 78999999999999999999999999999999999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (589)
+||++|++|||.+|++||+++|.. |..++..++.++++||+||++|++|+++.+. |..+.++.++||||+|+.+++ +
T Consensus 229 ~Pv~~t~~gkg~~p~~hp~~lG~~-g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~-k 305 (550)
T COG0028 229 APVVTTLMGKGAVPEDHPLSLGML-GMHGTKAANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIG-K 305 (550)
T ss_pred CCEEEccCcCccCCCCCccccccc-cccccHHHHHHhhcCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhC-C
Confidence 999999999999999999999996 8888888999999999999999999999987 776666544999999999997 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhhcC-chhhhhhhhhcCCCC-CCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcc
Q 007800 344 PSLGW----VFMADFLSALAKKLRKN-TTALENYRRIYVPPG-IPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (589)
Q Consensus 344 ~~~~~----~~~~~~l~~L~~~l~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~ 417 (589)
.+..+ .|++.+|++|.+.++.. ..|+....+.+.... ...........+|.++++.|++.++++.+++.|.|++
T Consensus 306 ~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~l~~~~~~daiv~~d~G~~ 385 (550)
T COG0028 306 NYPVDVPIVGDAKATLEALLEELKPERAAWLEELLEARAAYRDLALEELADDGIKPQYVIKVLRELLPDDAIVVTDVGQH 385 (550)
T ss_pred CCCCCeeEeccHHHHHHHHHHhhhhcchHHHHHHHHHHHhhhhhhhhccCCCccCHHHHHHHHHHhCCCCeEEEeCCcHH
Confidence 43333 38999999999998753 222222211110000 0001111222379999999999999999999999999
Q ss_pred cccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCch
Q 007800 418 WFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496 (589)
Q Consensus 418 ~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~ 496 (589)
..|. .++...++++++.+.++|+||+|+|+|||++++.|+++||+|+|||||+|+++||+|++||++|+++||+||++|
T Consensus 386 ~~w~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~~~ 465 (550)
T COG0028 386 QMWAARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNGGY 465 (550)
T ss_pred HHHHHHhcccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEEEEECCcc
Confidence 8875 445555666799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh----hhhcCC--CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007800 497 TIE----VEIHDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 565 (589)
Q Consensus 497 ~~~----~~~~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~ 565 (589)
++. ...+.. ...++.++.|.++|++||+ ++++|++++||+++|+++++ .++|+||||.+|++
T Consensus 466 g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~-----~g~~v~~~~el~~al~~al~--~~~p~lidv~id~~ 533 (550)
T COG0028 466 GMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGA-----KGIRVETPEELEEALEEALA--SDGPVLIDVVVDPE 533 (550)
T ss_pred ccchHHHHHhcCCCcceeecCCccHHHHHHHcCC-----eeEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecCc
Confidence 992 222232 2345544349999999999 99999999999999999997 89999999999998
No 3
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=5.5e-94 Score=793.26 Aligned_cols=524 Identities=18% Similarity=0.212 Sum_probs=433.8
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhcc-Cc-eEEEEeCCcchHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLS 103 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n 103 (589)
+++++|+|++.|+++||+||||+||+++.+|+|+|.++++|++|.||||++|+|||+||+|++ |+ +||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 478999999999999999999999999999999997656899999999999999999999999 88 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++||++||.+++|||+|+|+.+....+++ .+ |..||..+++++|||+.++.+++++++.|++|++.|.++
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~ 153 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKE-----DF---QAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGR 153 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCC-----cc---cccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999998755443 12 235788999999999999999999999999999999986
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++..+.+.. ...... .....+ .+.+..+++++++|.+||||+|++|.|+.++++.++|.+|+|++
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~~-~~~~~~-~~~~~~--~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~ 229 (588)
T TIGR01504 154 PGPVLIDLPFDVQVAEIEFD-PDTYEP-LPVYKP--AATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELT 229 (588)
T ss_pred CCeEEEEeCcchhhcccCCc-cccccc-ccCCCC--CCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHh
Confidence 69999999999986432211 110000 011011 12456899999999999999999999999999999999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCC-CCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeec
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAV-SSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~-~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (589)
++||+||++|||+||++||+++|++ |.. +++.+++++++||+||+||+++++..+..|..+.+..++||||.|+.+++
T Consensus 230 g~PV~tt~~gkg~~p~~hpl~~G~~-g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~ 308 (588)
T TIGR01504 230 GVPVIPTLMGWGCIPDDHELMAGMV-GLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIG 308 (588)
T ss_pred CCCeEEcCccCCCCCCCChhhCcCC-CCCCCcHHHHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhc
Confidence 9999999999999999999999997 554 66888999999999999999999888766665566678999999999987
Q ss_pred CCCcccc----ccHHHHHHHHHHHhhcC---c--hhhhhhh----hhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCC
Q 007800 342 NGPSLGW----VFMADFLSALAKKLRKN---T--TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (589)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~---~--~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~ 408 (589)
+++..+ .|++.+|++|.+.+... . ..+..|. +.+.... ......+.++++..+++.|++.++++.
T Consensus 309 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~p~~~~~~l~~~l~~d~ 386 (588)
T TIGR01504 309 -RVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLL-RKTHFDNVPVKPQRVYEEMNKAFGRDV 386 (588)
T ss_pred -CcCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCc-ccccCCCCCcCHHHHHHHHHHhCCCCC
Confidence 443333 48999999998876421 0 0111221 1110000 001123446999999999999999999
Q ss_pred EEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeE
Q 007800 409 AVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487 (589)
Q Consensus 409 iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ 487 (589)
+++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+++||+|+|||||+|+++||+|++||++|++
T Consensus 387 ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvv 466 (588)
T TIGR01504 387 CYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYI 466 (588)
T ss_pred EEEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeE
Confidence 9999999987654 456666666799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCchhhhhhh----cCCC-----CC-------CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh-c
Q 007800 488 IFLINNGGYTIEVEI----HDGP-----YN-------VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-E 550 (589)
Q Consensus 488 ivv~nN~~~~~~~~~----~~~~-----~~-------~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~-~ 550 (589)
+||+||++|++.+.. ++.. +. ...++||.++|++||+ ++.+|++++||+++|+++++ .
T Consensus 467 ~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~a~~~~ 541 (588)
T TIGR01504 467 HVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC-----KAIRVFKPEEIAPAFEQAKALM 541 (588)
T ss_pred EEEEeCCchHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHHHHhhc
Confidence 999999999983211 1111 11 1136899999999999 99999999999999999983 1
Q ss_pred -CCCCeEEEEEEcCCCCChH
Q 007800 551 -QKDSLCFIEVFVHKDDTSK 569 (589)
Q Consensus 551 -~~~gp~viev~~~~~~~~~ 569 (589)
..++|.||||.+++++.++
T Consensus 542 ~~~~~p~lIeV~i~~~~~~~ 561 (588)
T TIGR01504 542 AEHRVPVVVEVILERVTNIS 561 (588)
T ss_pred ccCCCcEEEEEEeccccCCC
Confidence 2689999999999988854
No 4
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1e-93 Score=790.92 Aligned_cols=526 Identities=20% Similarity=0.269 Sum_probs=435.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++|+|++.|+++||+||||+||+++.+|+++|.+.++|++|.||||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 82 (572)
T PRK08979 3 MLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT 82 (572)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence 47899999999999999999999999999999999755589999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++||.+++|||+|+|+.+....+.+ .++ ..||..+++++|||+.++.+++++++.|++|++.|.++ +
T Consensus 83 l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (572)
T PRK08979 83 ITGIATAYMDSIPMVVLSGQVPSNLIGND-----AFQ---ECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRP 154 (572)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCC-----CCc---ccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999988755443 222 35789999999999999999999999999999999996 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+.+.....+.+....+..+...+.+..+++++++|.+||||+|++|+|++++++.++|.+|+|+++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~ 234 (572)
T PRK08979 155 GPVVIDLPKDCLNPAILHPYEYPESIKMRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLN 234 (572)
T ss_pred CcEEEecCHhHhhhhhcccccCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhC
Confidence 99999999999764221100001010000001111124568999999999999999999999998899999999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (589)
+||+||+++||.||++||+++|.+ |..+++.+++++++||+||+||+++++..+..|..+.++.++||||.|+.+++ +
T Consensus 235 ~pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~ 312 (572)
T PRK08979 235 LPVVSTLMGLGAFPGTHKNSLGML-GMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSIS-K 312 (572)
T ss_pred CCEEEcccccccCCCCCcccccCC-ccCCCHHHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999997 88899999999999999999999999888766655566678999999999887 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhhcCc-----hhhhhhh----hhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 007800 344 PSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (589)
Q Consensus 344 ~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~ii 410 (589)
.+..+ .|++.+|++|.+.+..+. .....|. +.+...... ......++++.++++.|++.++++.++
T Consensus 313 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~d~iv 391 (572)
T PRK08979 313 TVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLA-YDKSSERIKPQQVIETLYKLTNGDAYV 391 (572)
T ss_pred ccCCceEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchh-ccCCCCCcCHHHHHHHHHHhcCCCeEE
Confidence 33333 489999999988775421 0001121 111111000 011234699999999999999999999
Q ss_pred EecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEE
Q 007800 411 IAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIF 489 (589)
Q Consensus 411 v~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~iv 489 (589)
+.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+++||+++|||||+|+++||+|+++|++|+++|
T Consensus 392 v~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~~v 471 (572)
T PRK08979 392 ASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKII 471 (572)
T ss_pred EECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCCCeEEE
Confidence 99999987554 45666677779999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCchhhhhh----hcCCCCC--CC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007800 490 LINNGGYTIEVE----IHDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 562 (589)
Q Consensus 490 v~nN~~~~~~~~----~~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~ 562 (589)
|+||++|++.++ ++++.+. .+ .++||.++|++||+ ++++|++.+||+++|+++++ ..++|.||||.+
T Consensus 472 V~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~eL~~al~~a~~-~~~~p~lIev~i 545 (572)
T PRK08979 472 NLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGH-----VGIRISDPDELESGLEKALA-MKDRLVFVDINV 545 (572)
T ss_pred EEeCCccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh-cCCCcEEEEEEe
Confidence 999999998321 2233221 22 45899999999999 99999999999999999985 238999999999
Q ss_pred CCCCCh
Q 007800 563 HKDDTS 568 (589)
Q Consensus 563 ~~~~~~ 568 (589)
++.+.+
T Consensus 546 ~~~~~~ 551 (572)
T PRK08979 546 DETEHV 551 (572)
T ss_pred CCcccc
Confidence 976643
No 5
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.8e-93 Score=786.44 Aligned_cols=537 Identities=21% Similarity=0.277 Sum_probs=439.5
Q ss_pred cCCCCCCCCcCcccccCCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhh
Q 007800 7 MGSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYAR 86 (589)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar 86 (589)
-=||.+.-|.|. ..++++|+|++.|+++||+||||+||+++.+|+++|.+.++|++|.||||++|+|||+||+|
T Consensus 7 ~~~~~~~~~~~~------~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar 80 (587)
T PRK06965 7 EFSTAESLSPPA------ADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYAR 80 (587)
T ss_pred ccccccccCCCc------hhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHH
Confidence 345555555542 24788999999999999999999999999999999976568999999999999999999999
Q ss_pred ccCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCCh
Q 007800 87 SRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL 165 (589)
Q Consensus 87 ~tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~ 165 (589)
++|+ +||++|+|||++|+++|+++||.+++|||+|+|+.+....+++ .++ ..||..+++++|||+.++.++
T Consensus 81 ~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~l~~~itk~~~~v~~~ 152 (587)
T PRK06965 81 ATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQD-----AFQ---ECDTVGITRPIVKHNFLVKDV 152 (587)
T ss_pred HhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----Ccc---cccHHHHhcCCcceeEEeCCH
Confidence 9999 9999999999999999999999999999999999988765543 232 357899999999999999999
Q ss_pred hhHHHHHHHHHHHhHhc-CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCc
Q 007800 166 GDAHELIDTAISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGP 244 (589)
Q Consensus 166 ~~~~~~l~~A~~~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~ 244 (589)
+++++.|++|++.|.++ +|||||+||.|++..+ .....+.+.......+...+.+..+++++++|.+||||+|++|.
T Consensus 153 ~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~ 230 (587)
T PRK06965 153 RDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTP--CEYEYPKSVEMRSYNPVTKGHSGQIRKAVSLLLSAKRPYIYTGG 230 (587)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEeChhhhhCh--hccccCccccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999999999999997 6999999999998642 21100111000000111112456899999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCccccccccc
Q 007800 245 NIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL 324 (589)
Q Consensus 245 g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~ 324 (589)
|++++++.+++.+|+|++|+||+||++|||.||++||+++|.+ |..++..+++++++||+||+||+++++..+..+..+
T Consensus 231 g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~-G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~ 309 (587)
T PRK06965 231 GVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGML-GMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHF 309 (587)
T ss_pred CccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhc
Confidence 9999999999999999999999999999999999999999997 888889999999999999999999988876544434
Q ss_pred CC-CCceEEEcCCceeecCCCccc----cccHHHHHHHHHHHhhcCc-----hhhhhhh----hhcCCCCCCCCCCCCCC
Q 007800 325 IK-KEKAIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEP 390 (589)
Q Consensus 325 ~~-~~~~i~id~d~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~ 390 (589)
.+ +.++||||.|+..++ +.+.. ..|+..+|++|.+.++... .....|. +.+...... ......+
T Consensus 310 ~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 387 (587)
T PRK06965 310 ASRPRKIIHIDIDPSSIS-KRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLK-YDRESEI 387 (587)
T ss_pred CCCCceEEEEeCCHHHhC-CcCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhh-ccccCCC
Confidence 33 468999999998886 33322 2488999999998775321 0111221 111010000 0112346
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhh
Q 007800 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (589)
Q Consensus 391 i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf 469 (589)
+++..+++.|++.++++.+++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|.|+++||+|+|||||
T Consensus 388 i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf 467 (587)
T PRK06965 388 IKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSI 467 (587)
T ss_pred cCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhh
Confidence 9999999999999999999999999987654 456666777799999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhhhhhh----cCCCCC--CC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHH
Q 007800 470 QVTAQEISTMIRCGQRSIIFLINNGGYTIEVEI----HDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTE 542 (589)
Q Consensus 470 ~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~----~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~ 542 (589)
+|+++||+|++||++|+++||+||++|++.+.. +++.+. .+ .++||.++|++||+ ++++|++.+||++
T Consensus 468 ~m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~~~~v~~~~eL~~ 542 (587)
T PRK06965 468 QMCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGH-----VGMRIEKTSDVEP 542 (587)
T ss_pred hcCHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCC-----EEEEECCHHHHHH
Confidence 999999999999999999999999999983221 222222 23 36899999999999 9999999999999
Q ss_pred HHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 543 AMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 543 al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
+|++++. ..++|.||||.+++.+.+
T Consensus 543 al~~a~~-~~~~p~lieV~i~~~~~~ 567 (587)
T PRK06965 543 ALREALR-LKDRTVFLDFQTDPTENV 567 (587)
T ss_pred HHHHHHh-cCCCcEEEEEEecccccc
Confidence 9999985 237899999999987754
No 6
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4e-93 Score=787.19 Aligned_cols=528 Identities=19% Similarity=0.260 Sum_probs=436.1
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
++++++|+|++.|+++||+||||+||+.+.+|+|+|.+.++|++|.||||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n 81 (574)
T PRK07979 2 EMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhh
Confidence 357999999999999999999999999999999999754589999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++||++||.+++|||+|+|+.+....+.+ .++ ..|+..+++++|||+.++.+++++++.|++||+.|.++
T Consensus 82 ~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~ 153 (574)
T PRK07979 82 AITGIATAYMDSIPLVVLSGQVATSLIGYD-----AFQ---ECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGR 153 (574)
T ss_pred hHHHHHHHhhcCCCEEEEECCCChhccCCC-----CCc---eecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999988765544 222 24788999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++....+.....+.+.......+...+.+..+++++++|.+|+||+|++|.|++++++.++|.+|+|++
T Consensus 154 ~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~ 233 (574)
T PRK07979 154 PGPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKL 233 (574)
T ss_pred CCcEEEEcChhhhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHh
Confidence 69999999999976321110000101000000111122456899999999999999999999999988999999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
++||+||+++||.||++||+++|.+ |..++..+++++++||+||+||+++++..+..|..+.++.++||||.|+.+++
T Consensus 234 ~~pv~tt~~gkg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~- 311 (574)
T PRK07979 234 NLPVVSSLMGLGAFPATHRQSLGML-GMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSIS- 311 (574)
T ss_pred CCCEEEccccCCCCCCCCcccccCC-cCCCCHHHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999996 88888999999999999999999999888766655666678999999999987
Q ss_pred CCcccc----ccHHHHHHHHHHHhhcCc-----hhhhhh----hhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 007800 343 GPSLGW----VFMADFLSALAKKLRKNT-----TALENY----RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (589)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~i 409 (589)
+.+..+ .|++.+|++|.+.+.... .....| .+.+...... ......++++..+++.|++.++++++
T Consensus 312 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~d~i 390 (574)
T PRK07979 312 KTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCLK-YDTHSEKIKPQAVIETLWRLTKGDAY 390 (574)
T ss_pred CcccCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhh-ccCCCCCcCHHHHHHHHHhhcCCCEE
Confidence 433333 488999999988775321 011122 1111010000 01113469999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEE
Q 007800 410 VIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSII 488 (589)
Q Consensus 410 iv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~i 488 (589)
++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|+|+++||+++|||||+|+++||+|++||++|+++
T Consensus 391 vv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~i 470 (574)
T PRK07979 391 VTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLV 470 (574)
T ss_pred EEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEE
Confidence 999999987554 5566666677999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCchhhhhh----hcCCCCC--CC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh-cCCCCeEEEEE
Q 007800 489 FLINNGGYTIEVE----IHDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-EQKDSLCFIEV 560 (589)
Q Consensus 489 vv~nN~~~~~~~~----~~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~-~~~~gp~viev 560 (589)
||+||++|++.++ .+++.+. .+ +++||.++|++||+ ++++|++++||+++|+++++ .+.++|.||||
T Consensus 471 vV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV 545 (574)
T PRK07979 471 LNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGH-----VGIQISHPDELESKLSEALEQVRNNRLVFVDV 545 (574)
T ss_pred EEEeCchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHHHHhccCCCCcEEEEE
Confidence 9999999998322 1233222 22 45899999999999 99999999999999999986 11389999999
Q ss_pred EcCCCCCh
Q 007800 561 FVHKDDTS 568 (589)
Q Consensus 561 ~~~~~~~~ 568 (589)
.+++.+.+
T Consensus 546 ~i~~~~~~ 553 (574)
T PRK07979 546 TVDGSEHV 553 (574)
T ss_pred EECCccCc
Confidence 99976644
No 7
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=6.7e-93 Score=785.61 Aligned_cols=526 Identities=20% Similarity=0.282 Sum_probs=435.1
Q ss_pred CCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcch
Q 007800 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGG 101 (589)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~ 101 (589)
|.+.++++|+|++.|+++||+||||+||+++.+|+++|.+.++|++|.||||++|+|||+||+|+||+ +||++|+|||+
T Consensus 7 ~~~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~ 86 (595)
T PRK09107 7 MPRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGA 86 (595)
T ss_pred hhhhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccH
Confidence 44568999999999999999999999999999999999765689999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHh
Q 007800 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (589)
Q Consensus 102 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 181 (589)
+|+++||++||.+++|||+|+|+.++...+.+ .++ ..||..+++++|||++++.+++++++.|++|++.|++
T Consensus 87 ~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s 158 (595)
T PRK09107 87 TNAVTPLQDALMDSIPLVCITGQVPTHLIGSD-----AFQ---ECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATS 158 (595)
T ss_pred hHHHHHHHHHhhcCCCEEEEEcCCChhhcCCC-----CCc---ccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988755443 222 3478999999999999999999999999999999999
Q ss_pred c-CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhh--HHHHHHHH
Q 007800 182 E-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAK--AQKAFIEL 258 (589)
Q Consensus 182 ~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~--~~~~l~~l 258 (589)
+ +|||||+||.|++..+.+...+...+. ..+..+...++.+.+++++++|.+|+||+|++|.|+.+++ +.+++.+|
T Consensus 159 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~l 237 (595)
T PRK09107 159 GRPGPVVVDIPKDVQFATGTYTPPQKAPV-HVSYQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLREL 237 (595)
T ss_pred CCCceEEEecCCChhhccccccccccccc-ccCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHH
Confidence 7 699999999999763211101111000 0010111123456899999999999999999999998875 89999999
Q ss_pred HHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCce
Q 007800 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (589)
Q Consensus 259 ae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (589)
+|++|+||++|+++||+||++||+++|++ |..++..+++++++||+||+||+++++..+..|..+.+..++||||.|+.
T Consensus 238 ae~lg~pv~tt~~gkg~~p~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~ 316 (595)
T PRK09107 238 VELTGFPITSTLMGLGAYPASGKNWLGML-GMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPS 316 (595)
T ss_pred HHHHCCCEEECccccccCCCCCCcccCCC-CCCccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHH
Confidence 99999999999999999999999999997 77888899999999999999999999887766655666678999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhhcCc-----hhhhhhh----hhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 007800 339 TVGNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS 405 (589)
Q Consensus 339 ~~~~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~ 405 (589)
.++ +.+..+ .|++.+|++|.+.++... .....|. +.+....... .....++++..+++.|++.++
T Consensus 317 ~i~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~~l~ 394 (595)
T PRK09107 317 SIN-KNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLAY-TPSDDVIMPQYAIQRLYELTK 394 (595)
T ss_pred HhC-CCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhc-cCCCCCcCHHHHHHHHHHhCC
Confidence 887 433222 488999999988775321 0011221 1111100000 112346999999999999997
Q ss_pred -CCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhC
Q 007800 406 -GDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCG 483 (589)
Q Consensus 406 -~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~ 483 (589)
++.+++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+++||+|+|||||+|+++||+|+++|+
T Consensus 395 ~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~ 474 (595)
T PRK09107 395 GRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYN 474 (595)
T ss_pred CCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHHhC
Confidence 5888999999987664 45666677779999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCchhhhh----hhcCCCCCC--C-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeE
Q 007800 484 QRSIIFLINNGGYTIEV----EIHDGPYNV--I-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLC 556 (589)
Q Consensus 484 l~v~ivv~nN~~~~~~~----~~~~~~~~~--~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~ 556 (589)
+|+++||+||++|++.+ .+++..+.. . .++||.++|++||+ ++.+|++++||+++|+++++ .++|.
T Consensus 475 lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~ 547 (595)
T PRK09107 475 LPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGA-----VGIRCEKPGDLDDAIQEMID--VDKPV 547 (595)
T ss_pred CCeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCE
Confidence 99999999999999832 222332222 2 35899999999999 99999999999999999997 88999
Q ss_pred EEEEEcCCCCC
Q 007800 557 FIEVFVHKDDT 567 (589)
Q Consensus 557 viev~~~~~~~ 567 (589)
||||.+++.+.
T Consensus 548 lIeV~i~~~~~ 558 (595)
T PRK09107 548 IFDCRVANLEN 558 (595)
T ss_pred EEEEEecCccc
Confidence 99999997653
No 8
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=3.7e-92 Score=773.85 Aligned_cols=532 Identities=34% Similarity=0.522 Sum_probs=442.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 106 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~ 106 (589)
.|++|+|++.|+++||++|||+||+++.+|+|+|.++++|++|.+|||++|+|||+||+|+||.+||++|+|||++|+++
T Consensus 1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg~gv~~~t~GPG~~n~~~ 80 (539)
T TIGR03393 1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKGAAALLTTFGVGELSAIN 80 (539)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcCceEEEEecCccHHHHhh
Confidence 37899999999999999999999999999999997656899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcE
Q 007800 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (589)
Q Consensus 107 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (589)
||++||.+++|||+|+|+.+.....+++++|+..+...+.+..++++++|||+..+ +++++++.|++|++.|.+++|||
T Consensus 81 gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~gPv 159 (539)
T TIGR03393 81 GIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVL-TEQNATAEIDRVITTALRERRPG 159 (539)
T ss_pred HHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998876666677776665444555689999999999866 78999999999999999989999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCce
Q 007800 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (589)
Q Consensus 187 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv 266 (589)
||+||.|++..+ ...+. .+.............+..+++++++|++||||+|++|.|+.++++.+++.+|+|++++||
T Consensus 160 ~l~iP~Dv~~~~--~~~~~-~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv 236 (539)
T TIGR03393 160 YLMLPVDVAAKA--VTPPV-NPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPH 236 (539)
T ss_pred EEEecccccCCc--cCCCC-cccCcCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHHHHHHhCCCE
Confidence 999999998743 21111 111110111111223456899999999999999999999998899999999999999999
Q ss_pred EEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCcc
Q 007800 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (589)
Q Consensus 267 ~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~ 346 (589)
++|++|||.||++||+++|.+.|..+.+.+++++++||+||+||+++++..+..|....+..++|+||+|+..++ ..+.
T Consensus 237 ~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~ 315 (539)
T TIGR03393 237 ATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLTPEQTIDVQPHAARVG-NVWF 315 (539)
T ss_pred EECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCCcccEEEEcCCeEEEC-ceEe
Confidence 999999999999999999998666777789999999999999999999888766653233457999999998886 4333
Q ss_pred cc---ccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccc
Q 007800 347 GW---VFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQK 423 (589)
Q Consensus 347 ~~---~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~ 423 (589)
.+ .|+..+|++|.+.++.. |...... +.. .......++++..+++.|++.++++++++.|.|++.++..+
T Consensus 316 ~~~~i~D~~~~l~~l~~~l~~~---~~~~~~~--~~~--~~~~~~~~l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~ 388 (539)
T TIGR03393 316 TGIPMNDAIETLVELCEHAGLM---WSSSGAI--PFP--QPDESRSALSQENFWQTLQTFLRPGDIILADQGTSAFGAAD 388 (539)
T ss_pred CCcCHHHHHHHHHHHhhhcccc---ccccccc--CcC--CCCCCCCccCHHHHHHHHHHhcCCCCEEEEccCchhhhhhh
Confidence 22 46778888887766321 1111000 110 01112246999999999999999999999999998755556
Q ss_pred ccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 007800 424 LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (589)
Q Consensus 424 ~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~ 503 (589)
+..+++.+++.+.++|+|||++|+|||+++|.|+++||+++|||||+|+++||+|+++|++|+++||+||++|++.+..+
T Consensus 389 ~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~ 468 (539)
T TIGR03393 389 LRLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIH 468 (539)
T ss_pred ccCCCCCeEEechhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeec
Confidence 66667777999999999999999999999999999999999999999999999999999999999999999999843322
Q ss_pred --CCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHH
Q 007800 504 --DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLE 573 (589)
Q Consensus 504 --~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~ 573 (589)
...+.+++++||.++|++||+. +.+++++|++.+||+++|+++++ .++|.||||.+++++.++.+..
T Consensus 469 ~~~~~~~~~~~~df~~la~a~G~~-~~~~~~~v~~~~el~~al~~a~~--~~~p~liev~i~~~~~p~~~~~ 537 (539)
T TIGR03393 469 GAEQRYNDIALWNWTHLPQALSLD-PQSECWRVSEAEQLADVLEKVAA--HERLSLIEVVLPKADIPPLLGA 537 (539)
T ss_pred CCCCCcCcCCCCCHHHHHHHcCCC-CccceEEeccHHHHHHHHHHHhc--cCCeEEEEEEcCcccCCHHHHh
Confidence 2356677889999999999981 11238999999999999999996 8999999999999998886643
No 9
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.4e-92 Score=782.78 Aligned_cols=527 Identities=21% Similarity=0.306 Sum_probs=434.3
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
++++++|+|++.|+++||++|||+||+++.+|+++|.++++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N 81 (574)
T PRK06466 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 357999999999999999999999999999999999765689999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++||++||.+++|||+|+|+.+....+++. + |..||..+++++|||+.++.+++++++.+++|++.|.++
T Consensus 82 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~ 153 (574)
T PRK06466 82 AITGIATAYMDSIPMVVLSGQVPSTLIGEDA-----F---QETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGR 153 (574)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCccccCCCc-----c---cccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999887655431 2 235788999999999999999999999999999999987
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++....+.....+.........+...+.+..+++++++|.+||||+|++|.|+.++++.++|.+|+|++
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~ 233 (574)
T PRK06466 154 PGPVVVDIPKDMTNPAEKFEYEYPKKVKLRSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLL 233 (574)
T ss_pred CCcEEEEcCHhHhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHh
Confidence 69999999999965211110000000000000111112356789999999999999999999999888999999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
++||++|+++||.||++||+++|.+ |..++...++++++||+||+||+++++..+..|..+.++.++||||.|+.+++
T Consensus 234 g~pv~tt~~~kg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~- 311 (574)
T PRK06466 234 NLPVTNTLMGLGGFPGTDRQFLGML-GMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASIS- 311 (574)
T ss_pred CCCEEEcCccCCCCCCCChhhcCCC-ccccCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999997 77888899999999999999999999888766665566678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhhcCc-----hhhhhh----hhhcCCCCC-CCCCCCCCCcCHHHHHHHHHhhCCCCC
Q 007800 343 GPSLGW----VFMADFLSALAKKLRKNT-----TALENY----RRIYVPPGI-PVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (589)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~----~~~~~~~~~-~~~~~~~~~i~~~~~~~~L~~~l~~~~ 408 (589)
+.+..+ .|++.+|++|.+.++... ..+..| .+.+..... ......+.++++..+++.|++.++++.
T Consensus 312 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ 391 (574)
T PRK06466 312 KTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIKPQQVVETLYEVTNGDA 391 (574)
T ss_pred CccCCCeEEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhcccCCCCCcCHHHHHHHHHhhCCCCe
Confidence 333323 488999999988775321 111122 111111000 001112346999999999999999999
Q ss_pred EEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeE
Q 007800 409 AVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487 (589)
Q Consensus 409 iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ 487 (589)
+++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|+++||+|+++|++|++
T Consensus 392 iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpv~ 471 (574)
T PRK06466 392 YVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVK 471 (574)
T ss_pred EEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeE
Confidence 9999999986554 455566666799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCchhhhhh----hcCCCCC--CC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCC-CCeEEEE
Q 007800 488 IFLINNGGYTIEVE----IHDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQK-DSLCFIE 559 (589)
Q Consensus 488 ivv~nN~~~~~~~~----~~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~-~gp~vie 559 (589)
+||+||++|++.+. .+++.+. .+ .++||.++|++||+ ++.+|++.+||+++|+++++ . ++|.|||
T Consensus 472 ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~~p~lIe 544 (574)
T PRK06466 472 IINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGH-----VGIRITDLKDLKPKLEEAFA--MKDRLVFID 544 (574)
T ss_pred EEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--cCCCcEEEE
Confidence 99999999998332 2233222 22 45899999999999 99999999999999999986 5 8999999
Q ss_pred EEcCCCCCh
Q 007800 560 VFVHKDDTS 568 (589)
Q Consensus 560 v~~~~~~~~ 568 (589)
|.+++++.+
T Consensus 545 v~i~~~~~~ 553 (574)
T PRK06466 545 IYVDRSEHV 553 (574)
T ss_pred EEeCCcccc
Confidence 999976643
No 10
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=2.7e-92 Score=785.36 Aligned_cols=531 Identities=22% Similarity=0.272 Sum_probs=435.9
Q ss_pred cccccCCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC---CCCeEEecCchhHHHHhhhhhhhccCc-eEE
Q 007800 18 APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGV-GAC 93 (589)
Q Consensus 18 ~~~~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~ 93 (589)
+..+.....++++|+|++.|+++||+||||+||+.+.+++++|.+. .+|++|.+|||++|+|||+||+|+||+ +||
T Consensus 10 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~ 89 (616)
T PRK07418 10 DSTTVTPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVC 89 (616)
T ss_pred CccccCCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEE
Confidence 3333334468999999999999999999999999999999999642 369999999999999999999999999 999
Q ss_pred EEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHH
Q 007800 94 VVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELID 173 (589)
Q Consensus 94 ~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~ 173 (589)
++|+|||++|+++||++|+.+++|||+|+|+.+....+++ .+| ..|+..+++++|||+.++.+++++++.|+
T Consensus 90 ~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~-----~~Q---e~d~~~~~~~vtk~~~~v~~~~~i~~~l~ 161 (616)
T PRK07418 90 FGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTD-----AFQ---ETDIFGITLPIVKHSYVVRDPSDMARIVA 161 (616)
T ss_pred EECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCC-----Ccc---cccHHHHhhhcceeEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999998765554 233 24788999999999999999999999999
Q ss_pred HHHHHhHhc-CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHH
Q 007800 174 TAISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQ 252 (589)
Q Consensus 174 ~A~~~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~ 252 (589)
+|++.|.++ +|||||+||.|++..+.+.....+.............+++..+++++++|++||||+|++|+|+.++++.
T Consensus 162 ~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~ 241 (616)
T PRK07418 162 EAFHIASSGRPGPVLIDIPKDVGQEEFDYVPVEPGSVKPPGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAH 241 (616)
T ss_pred HHHHHHhcCCCCcEEEecchhhhhchhcccccCccccccCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHH
Confidence 999999997 5999999999998642221000000000000011112356789999999999999999999999988899
Q ss_pred HHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEE
Q 007800 253 KAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAII 332 (589)
Q Consensus 253 ~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~ 332 (589)
++|++|||++++||++|+++||.||++||+++|.+ |..+++.+++++++||+||+||+++++..+..|..+.+..++||
T Consensus 242 ~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~-G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~ 320 (616)
T PRK07418 242 AELKELAERFQIPVTTTLMGKGAFDEHHPLSVGML-GMHGTAYANFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIH 320 (616)
T ss_pred HHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEE
Confidence 99999999999999999999999999999999996 88889999999999999999999999887765655666678999
Q ss_pred EcCCceeecCCCcccc----ccHHHHHHHHHHHhhcCc-----hhhhh-hhhhcCCCCCCCCCCCCCCcCHHHHHHHHHh
Q 007800 333 VQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT-----TALEN-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQD 402 (589)
Q Consensus 333 id~d~~~~~~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~ 402 (589)
||.|+.+++ +++..+ .|++.+|++|.+.++... ..|.+ +.+++.... ........++++..++++|++
T Consensus 321 id~d~~~ig-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~v~~~l~~ 398 (616)
T PRK07418 321 IDIDPAEVG-KNRRPDVPIVGDVRKVLVKLLERSLEPTTPPRTQAWLERINRWKQDYP-LVVPPYEGEIYPQEVLLAVRD 398 (616)
T ss_pred EeCCHHHhC-CccCCCeEEecCHHHHHHHHHHhhhccccccchHHHHHHHHHHHHhCc-ccccCCCCCcCHHHHHHHHHh
Confidence 999999887 433322 489999999998885432 11211 111110000 001112357999999999999
Q ss_pred hCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHh
Q 007800 403 MLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRC 482 (589)
Q Consensus 403 ~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~ 482 (589)
.++ +.+++.|.|++..|...+...++.+|+.+.++|+||+++|+|||+++|.|+|+||+|+|||+|+|+++||+|+++|
T Consensus 399 ~~~-d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~ 477 (616)
T PRK07418 399 LAP-DAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQY 477 (616)
T ss_pred hCC-CcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHHh
Confidence 998 5999999999877654332244556999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCchhhhhh----hcCCCC--CCC--CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCC
Q 007800 483 GQRSIIFLINNGGYTIEVE----IHDGPY--NVI--KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDS 554 (589)
Q Consensus 483 ~l~v~ivv~nN~~~~~~~~----~~~~~~--~~~--~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~g 554 (589)
++|+++||+||++|++.+. .++..+ .++ ..+||.++|++||+ ++++|++++||+++|+++++ .++
T Consensus 478 ~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~g~~V~~~~el~~al~~a~~--~~~ 550 (616)
T PRK07418 478 GINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGV-----KGMVISERDQLKDAIAEALA--HDG 550 (616)
T ss_pred CCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCC
Confidence 9999999999999998321 122222 223 46899999999999 99999999999999999997 889
Q ss_pred eEEEEEEcCCCCC
Q 007800 555 LCFIEVFVHKDDT 567 (589)
Q Consensus 555 p~viev~~~~~~~ 567 (589)
|+||||++++++.
T Consensus 551 p~lIeV~i~~~~~ 563 (616)
T PRK07418 551 PVLIDVHVRRDEN 563 (616)
T ss_pred CEEEEEEecCccc
Confidence 9999999998764
No 11
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=3.3e-92 Score=777.77 Aligned_cols=526 Identities=21% Similarity=0.316 Sum_probs=437.3
Q ss_pred ccCCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCc
Q 007800 21 RGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTV 99 (589)
Q Consensus 21 ~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~Gp 99 (589)
+|+...++++|+|++.|+++||++|||+||+++.+|+++|.+ ++|++|.|+||++|+|||+||+|+||+ +||++|+||
T Consensus 2 ~~~~~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~Gp 80 (561)
T PRK06048 2 TGSTEKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYD-SDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGP 80 (561)
T ss_pred CCccccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhh-CCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 355556899999999999999999999999999999999975 589999999999999999999999999 999999999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHh
Q 007800 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (589)
Q Consensus 100 G~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a 179 (589)
|++|+++||++||.+++|||+|+|+.+....+.+ .++ ..||..+++++|||++++++++++++.|++|++.|
T Consensus 81 G~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A 152 (561)
T PRK06048 81 GATNLVTGIATAYMDSVPIVALTGQVPRSMIGND-----AFQ---EADITGITMPITKHNYLVQDAKDLPRIIKEAFHIA 152 (561)
T ss_pred cHHHHHHHHHHHhhcCCCEEEEeccCCccccCCC-----Ccc---ccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988755443 222 34789999999999999999999999999999999
Q ss_pred Hhc-CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHH
Q 007800 180 LKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (589)
Q Consensus 180 ~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~l 258 (589)
.++ +|||||+||.|++..+.+...+...+.. ...+...++...+++++++|.+||||+|++|+|++++++.+++.+|
T Consensus 153 ~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~l 230 (561)
T PRK06048 153 STGRPGPVLIDLPKDVTTAEIDFDYPDKVELR--GYKPTYKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVEL 230 (561)
T ss_pred hcCCCCeEEEecChhhhhcccccccCcccccc--cCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHH
Confidence 997 7999999999997642211001101110 0011112345689999999999999999999999998999999999
Q ss_pred HHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCce
Q 007800 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (589)
Q Consensus 259 ae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (589)
||++|+||+||+++||.||++||+++|.+ |..+.+.+++++++||+||+||+++++..+..|..+.+..++||||.|+.
T Consensus 231 ae~lg~pV~tt~~~kg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~ 309 (561)
T PRK06048 231 AETIPAPVTTTLMGIGAIPTEHPLSLGML-GMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPA 309 (561)
T ss_pred HHHhCCCEEEccccCccCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHH
Confidence 99999999999999999999999999996 78888899999999999999999999877766655556678999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhhcCc-hhh-hhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 007800 339 TVGNGPSLGW----VFMADFLSALAKKLRKNT-TAL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (589)
Q Consensus 339 ~~~~~~~~~~----~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~ 412 (589)
+++ +++..+ .|++.+|++|++.++... ..| ..+.+.+...... ......++++..+++.|++.+| +.+++.
T Consensus 310 ~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~p-~~iiv~ 386 (561)
T PRK06048 310 EIS-KNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWKKEYPLK-YKEREDVIKPQYVIEQIYELCP-DAIIVT 386 (561)
T ss_pred HhC-CCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhh-ccCCCCCcCHHHHHHHHHhhCC-CcEEEE
Confidence 886 433332 489999999998876432 122 1111111000000 0112347999999999999998 799999
Q ss_pred cCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 007800 413 ETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (589)
Q Consensus 413 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~ 491 (589)
|+|++..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+++||+++|||||+|+++||+|+++|++|+++||+
T Consensus 387 d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~ 466 (561)
T PRK06048 387 EVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAIL 466 (561)
T ss_pred cCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEEEE
Confidence 999886654 4556666677999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhhh----hcCCCC--CCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 492 NNGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 492 nN~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
||++|++.+. .++..+ .++ +++||.++|++||+ ++++|++.+||+++|+++++ .++|.||||.+++
T Consensus 467 NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~t~~el~~al~~a~~--~~~p~liev~~~~ 539 (561)
T PRK06048 467 NNGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGA-----LGLRVEKPSEVRPAIEEAVA--SDRPVVIDFIVEC 539 (561)
T ss_pred ECCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecC
Confidence 9999998332 223333 233 57999999999999 99999999999999999997 8899999999998
Q ss_pred CCCh
Q 007800 565 DDTS 568 (589)
Q Consensus 565 ~~~~ 568 (589)
++.+
T Consensus 540 ~~~~ 543 (561)
T PRK06048 540 EENV 543 (561)
T ss_pred cccc
Confidence 7754
No 12
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.6e-92 Score=779.80 Aligned_cols=523 Identities=20% Similarity=0.254 Sum_probs=434.6
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchH
Q 007800 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 102 (589)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~ 102 (589)
.+.++++++|++.|+++||+||||+||+++.+|+|+|.+.++|++|.||||++|+|||+||+|++|+ +||++|+|||++
T Consensus 7 ~~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 86 (566)
T PRK07282 7 ESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGAT 86 (566)
T ss_pred cccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHH
Confidence 3568999999999999999999999999999999999765689999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc
Q 007800 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (589)
Q Consensus 103 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (589)
|+++||++||.+++|||+|+|+.+....+++ .++ ..||..+++++|||+.++.+++++++.|++|++.|+++
T Consensus 87 n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~ 158 (566)
T PRK07282 87 NAITGIADAMSDSVPLLVFTGQVARAGIGKD-----AFQ---EADIVGITMPITKYNYQIRETADIPRIITEAVHIATTG 158 (566)
T ss_pred HHHHHHHHHhhcCCCEEEEecccccccCCCC-----Ccc---ccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999888755543 222 24678999999999999999999999999999999997
Q ss_pred -CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHH
Q 007800 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (589)
Q Consensus 183 -~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~ 261 (589)
+|||||+||.|++..+.+.......+... ..+...+.+..+++++++|.+|+||+|++|.|+.++++.+++.+|||+
T Consensus 159 ~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~ 236 (566)
T PRK07282 159 RPGPVVIDLPKDVSALETDFIYDPEVNLPS--YQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAER 236 (566)
T ss_pred CCCeEEEeCChhhhhhhhcccccccccccC--CCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHH
Confidence 69999999999986432110000011100 011112245679999999999999999999999999999999999999
Q ss_pred hCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeec
Q 007800 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 262 ~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (589)
+++||++|+++||.||++||+++|.+ |..++...++++++||+||+||+++++..+..+..+.++.++||||.|+.+++
T Consensus 237 l~~pv~tt~~gkg~ip~~hpl~~G~~-G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~ 315 (566)
T PRK07282 237 YQIPVVTTLLGQGTIATSHPLFLGMG-GMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIG 315 (566)
T ss_pred hCCCEEeccccCCCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999986 77888899999999999999999999887765555556678999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhhcCc--hhh-hhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 007800 342 NGPSLGW----VFMADFLSALAKKLRKNT--TAL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414 (589)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~ 414 (589)
+.+..+ .|+..+|++|.+.++... ..| ..+.+.+.... .....+.++++.++++.|++.++++++++.|+
T Consensus 316 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~ 392 (566)
T PRK07282 316 -KIIKTDIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNRVR--SYDKKERVVQPQAVIERIGELTNGDAIVVTDV 392 (566)
T ss_pred -CCCCCCeEEecCHHHHHHHHHHhhcccCChHHHHHHHHHHHHhch--hccCcCCCcCHHHHHHHHHhhcCCCeEEEECC
Confidence 333222 489999999998875431 112 12211110010 01112347999999999999999999999999
Q ss_pred Ccccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeC
Q 007800 415 GDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493 (589)
Q Consensus 415 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN 493 (589)
|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+++||+++|||||+|+++||+|+++|++|+++||+||
T Consensus 393 G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN 472 (566)
T PRK07282 393 GQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNN 472 (566)
T ss_pred cHHHHHHHHhcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9987664 456666677799999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchhhhhh----hcCCCC--CCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 494 GGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 494 ~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
++|++.+. ++++.+ ..+ +++||.++|++||+ ++.+|++.+||+++|+. +. .++|.||||.+++.+
T Consensus 473 ~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~-~~--~~~p~lIeV~v~~~~ 544 (566)
T PRK07282 473 HSLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGI-----KHYKFDNPETLAQDLEV-IT--EDVPMLIEVDISRKE 544 (566)
T ss_pred CCchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHH-hc--CCCCEEEEEEeCCcc
Confidence 99998332 223322 233 46899999999999 99999999999999974 54 689999999999866
Q ss_pred Ch
Q 007800 567 TS 568 (589)
Q Consensus 567 ~~ 568 (589)
.+
T Consensus 545 ~~ 546 (566)
T PRK07282 545 HV 546 (566)
T ss_pred cc
Confidence 43
No 13
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=1.6e-91 Score=765.46 Aligned_cols=528 Identities=25% Similarity=0.400 Sum_probs=430.5
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHH
Q 007800 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLN 106 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~ 106 (589)
+++|+|++.|+++||++|||+||+++.+|++++.+..+|++|.||||++|+|||+||+|+||+ +||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 578999999999999999999999999999999765459999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcE
Q 007800 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (589)
Q Consensus 107 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (589)
||++||.+++|||+|+|+.++...+++.++|+..+ ++.+|..+|+++|||+.++.+++++++.|++|++.|+++||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~~gPv 158 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR--TLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARELSRPV 158 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeecc--chHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999886666655554322 2335889999999999999999999999999999999989999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCce
Q 007800 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (589)
Q Consensus 187 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv 266 (589)
||+||.|++..+.+ .....+ . ........+..+++++++|++||||+|++|+|+.++++.+++++|||++|+||
T Consensus 159 ~i~iP~Dv~~~~~~--~~~~~~--~--~~~~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv 232 (535)
T TIGR03394 159 YLEIPRDMVNAEVE--PVPDDP--A--WPVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPV 232 (535)
T ss_pred EEEechhhccCccC--CCCCCC--C--CCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCE
Confidence 99999999874322 111111 1 11112234567999999999999999999999999999999999999999999
Q ss_pred EEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCcc
Q 007800 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (589)
Q Consensus 267 ~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~ 346 (589)
+||++|||+||++||+++|.+.|..+++..++++++||+||+||+++++..+..+..+.+..++||||.|+.+++ +++.
T Consensus 233 ~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~ 311 (535)
T TIGR03394 233 VTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLG-YHVY 311 (535)
T ss_pred EEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEEC-CeeE
Confidence 999999999999999999977788899999999999999999999998875533333444578999999999887 5555
Q ss_pred ccccHHHHHHHHHHHhhcCch-hhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCC--CEEEecCCcccccccc
Q 007800 347 GWVFMADFLSALAKKLRKNTT-ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGD--TAVIAETGDSWFNCQK 423 (589)
Q Consensus 347 ~~~~~~~~l~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~--~iiv~d~G~~~~~~~~ 423 (589)
.++.+.++.+.|.+.+..... ....+.... ............++++.++++.|++.++++ .++++|+|++.++..+
T Consensus 312 ~~~~i~d~~~~L~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~~~ 390 (535)
T TIGR03394 312 ADIPLAGLVDALLALLCGLPPSDRTTRGKGP-HAYPRGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMD 390 (535)
T ss_pred CCccHHHHHHHHHHhhhcccccccccccccc-cccccccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHHHh
Confidence 555444444444333321110 000011000 000000012234699999999999999875 4689999997666544
Q ss_pred ccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 007800 424 LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (589)
Q Consensus 424 ~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~ 503 (589)
+. +.+|+.+.++|+|||++|+|+|+++|.+ +++|+++|||||+|+++||+|++||++|+++||+||++|++.+..+
T Consensus 391 ~~---~~~~~~~~~~g~mG~glpaaiGa~lA~~-~r~v~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~ 466 (535)
T TIGR03394 391 MD---DAGLMAPGYYAGMGFGVPAGIGAQCTSG-KRILTLVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRVFQ 466 (535)
T ss_pred cC---CCcEECcCccchhhhHHHHHHHHHhCCC-CCeEEEEeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeehhc
Confidence 42 3468888999999999999999999975 5678899999999999999999999999999999999999854333
Q ss_pred C-CCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHH
Q 007800 504 D-GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWG 575 (589)
Q Consensus 504 ~-~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~~~ 575 (589)
. ..++++.++||.++|++||+ ++++|++.+||+++|+++++ ..++|.||||.+++++.++.+.++.
T Consensus 467 ~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~-~~~~p~lIev~i~~~~~~~~~~~~~ 533 (535)
T TIGR03394 467 PESAFNDLDDWRFADMAAGMGG-----DGVRVRTRAELAAALDKAFA-TRGRFQLIEAMLPRGVLSDTLARFV 533 (535)
T ss_pred cCCCcccCCCCCHHHHHHHcCC-----CceEeCCHHHHHHHHHHHHh-cCCCeEEEEEECCcccCCHHHHHHh
Confidence 2 24566778999999999999 99999999999999999985 2356999999999999998776653
No 14
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=6e-92 Score=774.31 Aligned_cols=523 Identities=19% Similarity=0.246 Sum_probs=436.3
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
..++++|+|++.|+++||+||||+||+++.+|+|+|.+ ++|++|.|+||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 13 ~~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N 91 (570)
T PRK06725 13 EEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYE-SGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATN 91 (570)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHh-cCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 35899999999999999999999999999999999975 589999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++||++||.+++|||+|+|+.+....+++ .++ ..|+..+++++|||+.++.+++++++.|++|++.|.++
T Consensus 92 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~ 163 (570)
T PRK06725 92 LVTGLADAYMDSIPLVVITGQVATPLIGKD-----GFQ---EADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGR 163 (570)
T ss_pred HHHHHHHHhhcCcCEEEEecCCCcccccCC-----CCc---ccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988755443 222 35789999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++..+.+.......+ ..+..+...+++..+++++++|.+||||+|++|+|+.++++.++|.+|||++
T Consensus 164 ~GPV~l~iP~Dv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~ 241 (570)
T PRK06725 164 PGPVLIDIPKDVQNEKVTSFYNEVVE--IPGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFAREN 241 (570)
T ss_pred CCcEEEccccchhhcccccccCcccc--cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHh
Confidence 69999999999986422110010000 0000011123456799999999999999999999999989999999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
++||+||+++||.||++||+++|.+ |..++...++++++||+||++|+++++..+..+..+.+..++||||.|+.+++
T Consensus 242 ~~PV~tt~~~kg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~- 319 (570)
T PRK06725 242 RIPVVSTLMGLGAYPPGDPLFLGML-GMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFH- 319 (570)
T ss_pred CCCEEECCccCcCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhC-
Confidence 9999999999999999999999997 88888899999999999999999999887765555556668999999999987
Q ss_pred CCcccc----ccHHHHHHHHHHHhhcCc-hhh-hhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 007800 343 GPSLGW----VFMADFLSALAKKLRKNT-TAL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (589)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~ 416 (589)
+++..+ .|+..+|++|.+.+.... ..| ..+.+........ ......++++..+++.|++.++++.+++.|+|+
T Consensus 320 ~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~l~~d~iiv~d~g~ 398 (570)
T PRK06725 320 KNVAVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWKEEYPLS-YKQKESELKPQHVINLVSELTNGEAIVTTEVGQ 398 (570)
T ss_pred CCCCCCeEEecCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhh-hcccCCCcCHHHHHHHHHhhCCCCcEEEeCCcH
Confidence 443333 389999999988775421 112 1111111000000 011234799999999999999999999999999
Q ss_pred ccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCc
Q 007800 417 SWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGG 495 (589)
Q Consensus 417 ~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~ 495 (589)
+..|. .++..+++.+|+.+.++|+||+++|+|+|+++|.|+++||+++|||||+|+++||+|++++++|+++||+||++
T Consensus 399 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN~~ 478 (570)
T PRK06725 399 HQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNKF 478 (570)
T ss_pred HHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEEEEECCc
Confidence 87654 45666666779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh----hcCCCC--CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 496 YTIEVE----IHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 496 ~~~~~~----~~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
|++.+. .++..+ .++.++||.++|++||+ ++++|++.++|+++++++++ .+||.||||.+++++.+
T Consensus 479 ~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~~p~liev~id~~~~~ 550 (570)
T PRK06725 479 LGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGV-----KGLRATNSTEAKQVMLEAFA--HEGPVVVDFCVEEGENV 550 (570)
T ss_pred cHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCcccc
Confidence 998332 123333 34467999999999999 99999999999999999997 89999999999987654
No 15
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=1.2e-91 Score=779.55 Aligned_cols=544 Identities=22% Similarity=0.292 Sum_probs=443.3
Q ss_pred ccCCCCCCCCcCccccc--CCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhh
Q 007800 6 AMGSTGQPGSAPAPVRG--GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADG 83 (589)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~g 83 (589)
+-.|...|..+|+.+.- ....++++|+|++.|+++||+||||+||+++.+|+++|.++++|++|.||||++|+|||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adg 87 (612)
T PRK07789 8 AAASAAPPPAAPAARPRIVAPERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEG 87 (612)
T ss_pred hhhccCCCCCCccccccccccccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHH
Confidence 34455555556644433 2335799999999999999999999999999999999976568999999999999999999
Q ss_pred hhhccCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEe
Q 007800 84 YARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVV 162 (589)
Q Consensus 84 yar~tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v 162 (589)
|+|+||+ +||++|+|||++|+++||++||.+++|||+|+|+.+....+.+ .++ ..||..+++++|||++++
T Consensus 88 yar~tg~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~s~~v 159 (612)
T PRK07789 88 YAQATGRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTD-----AFQ---EADIVGITMPITKHNFLV 159 (612)
T ss_pred HHHHhCCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----cCc---ccchhhhhhcceeEEEEc
Confidence 9999999 9999999999999999999999999999999999988755443 222 347899999999999999
Q ss_pred CChhhHHHHHHHHHHHhHhc-CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEE
Q 007800 163 NNLGDAHELIDTAISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLV 241 (589)
Q Consensus 163 ~~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv 241 (589)
.+++++++.|++|++.|.++ +|||||+||.|++..+.+.......... ...+...+.+..+++++++|.+||||+|+
T Consensus 160 ~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~--~~~~~~~p~~~~i~~~~~~L~~AkrPlIl 237 (612)
T PRK07789 160 TDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFSWPPRMDLP--GYRPVTKPHGKQIREAAKLIAAARRPVLY 237 (612)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCceEEEEEccchhhcccccccCcccccc--CCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999986 7999999999997642211001100110 00111122456799999999999999999
Q ss_pred eCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccc
Q 007800 242 GGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY 321 (589)
Q Consensus 242 ~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~ 321 (589)
+|.|+.++++.+++.+|+|++++||+||+++||.||++||+++|.+ |..++..+++++++||+||++|+++++..+..+
T Consensus 238 ~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t~~~ 316 (612)
T PRK07789 238 VGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMP-GMHGTVAAVAALQRSDLLIALGARFDDRVTGKL 316 (612)
T ss_pred ECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCC-cccCcHHHHHHHHhCCEEEEECCCCCccccCCh
Confidence 9999998899999999999999999999999999999999999996 888888899999999999999999988776555
Q ss_pred cccCCCCceEEEcCCceeecCCCcccc----ccHHHHHHHHHHHhhcCc-----hhhhhhh----hhcCCCCCCCCCCCC
Q 007800 322 SLLIKKEKAIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQN 388 (589)
Q Consensus 322 ~~~~~~~~~i~id~d~~~~~~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~ 388 (589)
..+.+..++||||.|+.+++ +++..+ .|++.+|++|.+.++... ..+..|. +.+...........+
T Consensus 317 ~~~~~~~~~i~Id~d~~~i~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 395 (612)
T PRK07789 317 DSFAPDAKVIHADIDPAEIG-KNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPSD 395 (612)
T ss_pred hhcCCCCcEEEEECCHHHhC-CCCCCCeEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCccccccccC
Confidence 55556678999999999887 433333 489999999998875421 1112221 111110000011123
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch
Q 007800 389 EPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG 467 (589)
Q Consensus 389 ~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG 467 (589)
.++++..+++.|++.++++++++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||++++.|+++||+++|||
T Consensus 396 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG 475 (612)
T PRK07789 396 GSLAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDG 475 (612)
T ss_pred CCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcch
Confidence 479999999999999999999999999987654 4566666667999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcCCCCC--CC-----CCCChHHHHHHccCCCCCccEEEeCC
Q 007800 468 SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVE----IHDGPYN--VI-----KNWDYTGLVNAIHNGEGKCWTAKVRS 536 (589)
Q Consensus 468 sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~----~~~~~~~--~~-----~~~d~~~la~a~G~~~~~~~~~~v~~ 536 (589)
||+|+++||+|++++++|+++||+||++|++.+. .++..+. .+ +.+||.++|++||+ ++++|++
T Consensus 476 ~f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~ 550 (612)
T PRK07789 476 CFQMTNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGC-----VGLRCER 550 (612)
T ss_pred hhhccHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCC-----eEEEECC
Confidence 9999999999999999999999999999998322 2222221 22 24799999999999 9999999
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 537 EDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 537 ~~~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
.+||+++|+++++ ..++|.||||.+++...
T Consensus 551 ~~eL~~al~~a~~-~~~~p~lIev~i~~~~~ 580 (612)
T PRK07789 551 EEDVDAVIEKARA-INDRPVVIDFVVGKDAM 580 (612)
T ss_pred HHHHHHHHHHHHh-cCCCcEEEEEEECCccc
Confidence 9999999999986 23799999999997653
No 16
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4.7e-92 Score=776.90 Aligned_cols=524 Identities=20% Similarity=0.259 Sum_probs=436.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++++|++.|+++||+||||+||+++.+|+++|.++++|++|.||||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 37899999999999999999999999999999999765689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++||.+++|||+|+|+.+....+.+ .++ ..||..+++++|||+.++.+++++++.|++|++.|+++ |
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~ 153 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTD-----AFQ---EIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRP 153 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCC-----CCc---ccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988754442 222 35788999999999999999999999999999999996 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+.+...+...+.. ...+...+.+..+++++++|.+|+||+|++|.|+.++++.++|++|+|+++
T Consensus 154 GPV~l~iP~Dv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~ 231 (563)
T PRK08527 154 GPVHIDIPKDVTATLGEFEYPKEISLK--TYKPTYKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTG 231 (563)
T ss_pred CcEEEEcCHhHhhhhhccccccccccc--cCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHC
Confidence 999999999997642111011111110 000111124567999999999999999999999999999999999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (589)
+||++|+++||+||++||+++|.+ |..++...++++++||+||+||+++++..+..|..+.+..++||||.|+.+++ +
T Consensus 232 ~pV~tt~~~kg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~-~ 309 (563)
T PRK08527 232 IPAVETLMARGVLRSDDPLLLGML-GMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSIS-K 309 (563)
T ss_pred CCEEEccccCCCCCCCChhhcCCC-cccCCHHHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999996 78888999999999999999999999887766665666678999999999886 3
Q ss_pred Ccc----ccccHHHHHHHHHHHhhcCc----hhhh-hhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 007800 344 PSL----GWVFMADFLSALAKKLRKNT----TALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414 (589)
Q Consensus 344 ~~~----~~~~~~~~l~~L~~~l~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~ 414 (589)
.+. ...|++.+|++|.+.++... ..|. .+.+.+...... ......++++..+++.|++.++++.+++.|+
T Consensus 310 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~ 388 (563)
T PRK08527 310 IVNADYPIVGDLKNVLKEMLEELKEENPTTYKEWREILKRYNELHPLS-YEDSDEVLKPQWVIERVGELLGDDAIISTDV 388 (563)
T ss_pred CCCCCeEEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhCccc-ccCCCCCcCHHHHHHHHHhhCCCCeEEEECC
Confidence 222 12489999999998875431 1121 111111111101 0112347999999999999999999999999
Q ss_pred Ccccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeC
Q 007800 415 GDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493 (589)
Q Consensus 415 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN 493 (589)
|++..|. .++..+++.+|+.+.++|+||+++|+|||++++.|+++||+++|||||+|+++||+|++++++|+++||+||
T Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN 468 (563)
T PRK08527 389 GQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILNN 468 (563)
T ss_pred cHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHHhCCCeEEEEEEC
Confidence 9887654 456666667799999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchhhhhhh----cCCCC--CCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 494 GGYTIEVEI----HDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 494 ~~~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
++|++.+.. ++..+ .++ .++||.++|++||+ ++++|++.+||+++|+++++ .++|.||||.+++.+
T Consensus 469 ~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lieV~v~~~~ 541 (563)
T PRK08527 469 NFLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGG-----IGFRVTTKEEFDKALKEALE--SDKVALIDVKIDRFE 541 (563)
T ss_pred CcchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEECCcc
Confidence 999984322 22222 234 36899999999999 99999999999999999997 789999999999877
Q ss_pred ChH
Q 007800 567 TSK 569 (589)
Q Consensus 567 ~~~ 569 (589)
.+.
T Consensus 542 ~~~ 544 (563)
T PRK08527 542 NVL 544 (563)
T ss_pred ccc
Confidence 553
No 17
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=9.4e-92 Score=774.22 Aligned_cols=527 Identities=20% Similarity=0.257 Sum_probs=438.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
|+++++|++.|+++||+||||+||+++.+|+++|.+ ++|++|.++||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~ 79 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRD-SSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLV 79 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHH
Confidence 578999999999999999999999999999999964 689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-CC
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (589)
+||++||.+++|||+|+|+++....+++. .+..||.++++++|||+.++.+++++++.|++|++.|.++ +|
T Consensus 80 ~~i~~A~~~~~Pll~i~g~~~~~~~~~~~--------~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 151 (547)
T PRK08322 80 TGVAYAQLGGMPMVAITGQKPIKRSKQGS--------FQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPG 151 (547)
T ss_pred HHHHHHhhcCCCEEEEeccccccccCCCc--------cccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999987555431 2345789999999999999999999999999999999997 69
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||+||.|++..+ ... .+....... . ..++...+++++++|.+||||+|++|+|+.++++.+++.+|||++++
T Consensus 152 PV~l~iP~dv~~~~--~~~-~~~~~~~~~-~--~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~ 225 (547)
T PRK08322 152 AVHLELPEDIAAEE--TDG-KPLPRSYSR-R--PYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGI 225 (547)
T ss_pred cEEEEcChhhhhCc--ccc-ccccccCCC-C--CCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCC
Confidence 99999999997642 211 111111111 1 12245678999999999999999999999988899999999999999
Q ss_pred ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCC
Q 007800 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (589)
||+||++|||.||++||+++|.+ |..+.+.+++++++||+||+||+++.+..+..|. ..++.++||||.|+..++ ..
T Consensus 226 pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~-~~~~~~~i~id~d~~~~~-~~ 302 (547)
T PRK08322 226 PFFTTQMGKGVIPETHPLSLGTA-GLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN-PNGDKKVIHINFLPAEVD-PV 302 (547)
T ss_pred CEEEccccCCcCCCCCchhccCC-CCCCCHHHHHHHHhCCEEEEECCCCccccccccC-CCCCCeEEEEeCCHHHcC-CC
Confidence 99999999999999999999996 7778888999999999999999999887765554 234568999999998886 33
Q ss_pred ccc----cccHHHHHHHHHHHhhcCch----hhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 007800 345 SLG----WVFMADFLSALAKKLRKNTT----ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (589)
Q Consensus 345 ~~~----~~~~~~~l~~L~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~ 416 (589)
+.. ..|++.+|++|.+.++.... ++..+++...+...........++++..+++.|++.++++++++.|+|+
T Consensus 303 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ii~~d~G~ 382 (547)
T PRK08322 303 YFPQVEVVGDIANSLWQLKERLADQPHWDFPRFLKIREAIEAHLEEGADDDRFPMKPQRIVADLRKVMPDDDIVILDNGA 382 (547)
T ss_pred cCCCeEEecCHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCCCeEEEECCcH
Confidence 332 24899999999988754321 1222222111110000111223689999999999999999999999999
Q ss_pred cccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCc
Q 007800 417 SWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGG 495 (589)
Q Consensus 417 ~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~ 495 (589)
+..|.. ++...++.+++.+.++|+|||++|+|||++++.|+++||+++|||||+|+++||+|+++|++|+++||+||++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~ 462 (547)
T PRK08322 383 YKIWFARNYRAYEPNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNA 462 (547)
T ss_pred HHHHHHHhcccCCCCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEEEEeCCC
Confidence 876543 4455555669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhh----cCC-CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHH
Q 007800 496 YTIEVEI----HDG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKE 570 (589)
Q Consensus 496 ~~~~~~~----~~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~ 570 (589)
|++.+.. +.. .+.++.++||.++|++||+ ++++|++.+||+++|+++++ .++|.||||.++++..++.
T Consensus 463 ~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~v~~~~~~~~ 535 (547)
T PRK08322 463 YGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGA-----KGYRVESADDLLPTLEEALA--QPGVHVIDCPVDYSENDRV 535 (547)
T ss_pred cchHHHHHHhhcCCcccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecCccCcch
Confidence 9983321 121 2345567999999999999 99999999999999999986 7899999999998888776
Q ss_pred HHHHHHHh
Q 007800 571 LLEWGSRV 578 (589)
Q Consensus 571 ~~~~~~~~ 578 (589)
+....+.+
T Consensus 536 ~~~~~~~~ 543 (547)
T PRK08322 536 LNQELGEL 543 (547)
T ss_pred hhhhhhhc
Confidence 66655443
No 18
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.6e-91 Score=709.48 Aligned_cols=551 Identities=40% Similarity=0.636 Sum_probs=494.1
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHH
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~ 104 (589)
+.+|++++|+++|.+.||++|||+||+.+++|+|.|...++++||.|.||.+|+||||||||.+|.+++++|.|+|.+.+
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA 81 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNGISALVTTFGVGELSA 81 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcCceEEEEecccchhhh
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCC
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (589)
++||+.+|.+++|||.|+|.+++..+.++..+||++|++||..+.+|++++|+....+++.+.++..|+|+++.+...+.
T Consensus 82 ~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~R 161 (557)
T COG3961 82 LNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRR 161 (557)
T ss_pred hcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||.+|.|+... ++..+ ..|.......+++....+.++.++++|.++|+|+|++|..+.+.+..+++++|++++++
T Consensus 162 PvYI~lP~dva~~--~~~~p-~~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~ 238 (557)
T COG3961 162 PVYIGLPADVADL--PIEAP-LTPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGF 238 (557)
T ss_pred CeEEEcchHHhcC--cCCCC-CCccccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCC
Confidence 9999999999774 33222 12222222334444556788999999999999999999999999999999999999999
Q ss_pred ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCC
Q 007800 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (589)
|++++++|||+|+|.||.|+|+|+|.++.+...++++.||+||.+|+.+++..+++|+...+..++|+++.+..++. ..
T Consensus 239 p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~-~~ 317 (557)
T COG3961 239 PVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIK-DA 317 (557)
T ss_pred CeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEec-cc
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999999886 55
Q ss_pred ccccccHHHHHHHHHHHhhcCchhh--hhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccc
Q 007800 345 SLGWVFMADFLSALAKKLRKNTTAL--ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ 422 (589)
Q Consensus 345 ~~~~~~~~~~l~~L~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~ 422 (589)
.+..+.++.+|+.|+..+..+.... .++.+.. ........+.+++...+++.+.+++.++++|++|.|+++++..
T Consensus 318 ~f~~l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~---p~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~~ 394 (557)
T COG3961 318 VFTNLSMKDALQELAKKIDKRNLSAPPVAYPART---PPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGAL 394 (557)
T ss_pred ccCCeeHHHHHHHHHHHhhhcccCCCCccCCCCC---CCCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEccccccccce
Confidence 6666889999999999887654211 1111111 0111234456799999999999999999999999999999999
Q ss_pred cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 007800 423 KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEI 502 (589)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~ 502 (589)
.+.+|++..|+.+..||++||++|+++|+++|.|+||+|+|+|||||+++.||+.|..|++++.+++|+||+||.+++.+
T Consensus 395 ~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~ifvlNN~GYTIEr~I 474 (557)
T COG3961 395 DIRLPKGATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNNDGYTIERAI 474 (557)
T ss_pred eeecCCCCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHHHHcCCCcEEEEEcCCCcEEEehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC--CCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHHhhh
Q 007800 503 HD--GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSA 580 (589)
Q Consensus 503 ~~--~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~~~~~~~~ 580 (589)
|+ .+|+++.+|||.++.++||+.+.. ...++.+.++|..+++.+.+ ..+++.+|||+++..|.|+.|..+.+....
T Consensus 475 Hg~~~~YNdI~~Wd~~~l~~afg~~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~i~lIEv~lp~~D~P~~L~~~~~~~a~ 552 (557)
T COG3961 475 HGPTAPYNDIQSWDYTALPEAFGAKNGE-AKFRATTGEELALALDVAFA-NNDRIRLIEVMLPVLDAPELLIDQAKATAA 552 (557)
T ss_pred cCCCcCcccccccchhhhhhhcCCCCce-EEEeecChHHHHHHHHHHhc-CCCceEEEEEecCcccCCHHHHHHHHhhhh
Confidence 86 689999999999999999994332 22788999999999999985 667899999999999999999999988777
Q ss_pred hcCC
Q 007800 581 ANSR 584 (589)
Q Consensus 581 ~~~~ 584 (589)
.+.+
T Consensus 553 ~n~k 556 (557)
T COG3961 553 QNNK 556 (557)
T ss_pred hhcC
Confidence 6543
No 19
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=2.8e-91 Score=773.18 Aligned_cols=529 Identities=19% Similarity=0.270 Sum_probs=436.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++++|++.|+++||++|||+||+++.+|+|++.+ ++|++|.||||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 79 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPP-AGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNC 79 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHH
Confidence 3789999999999999999999999999999999975 689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCC
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (589)
++||++||.+++|||+|+|+.+....+.+ .+ |..||..+|+++|||+.++.+++++++.|++|++.|.+++|
T Consensus 80 ~~gla~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~G 151 (579)
T TIGR03457 80 VTAIAAAYWAHTPVVIVTPEAGTKTIGLG-----GF---QEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREMG 151 (579)
T ss_pred HHHHHHHhhcCCCEEEEeCCCccccCCCC-----CC---cccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988755443 12 23478999999999999999999999999999999999899
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||+||.|++..+.+. ..+.+.... . ..+++..+++++++|.+||||+|++|+|+.++++.++|.+|||++++
T Consensus 152 PV~l~iP~Dv~~~~~~~--~~~~~~~~~--~--~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~ 225 (579)
T TIGR03457 152 PAQLNIPRDYFYGEIDV--EIPRPVRLD--R--GAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGA 225 (579)
T ss_pred CEEEEeCcchhhhhccc--ccCcccccC--C--CCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCC
Confidence 99999999998743211 111111111 1 12245679999999999999999999999999999999999999999
Q ss_pred ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCccccc-c--cccCCCCceEEEcCCceeec
Q 007800 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG-Y--SLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~-~--~~~~~~~~~i~id~d~~~~~ 341 (589)
||+||+++||.||++||+++|++ |..++...++++++||+||+||+++++..+.. | ..+.+..++||||.|+.+++
T Consensus 226 PV~tt~~gkg~~p~~hp~~~G~~-g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~ 304 (579)
T TIGR03457 226 PVVNSYLHNDSFPASHPLWVGPL-GYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIG 304 (579)
T ss_pred CEEEcccccccCCCCCchhccCC-cCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhC
Confidence 99999999999999999999996 77788889999999999999999998765421 2 23445678999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhhcCc-------------hhhhhhhh----hcC-CCCCC------CCCCCCCCcCH
Q 007800 342 NGPSLGW----VFMADFLSALAKKLRKNT-------------TALENYRR----IYV-PPGIP------VKRAQNEPLRV 393 (589)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~~-------------~~~~~~~~----~~~-~~~~~------~~~~~~~~i~~ 393 (589)
+++..+ .|++.+|++|.+.+.... ..+..|.+ .+. ..... .....+.++++
T Consensus 305 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (579)
T TIGR03457 305 -LVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHP 383 (579)
T ss_pred -CCCCCCeeEecCHHHHHHHHHHhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCH
Confidence 433332 488999999988775320 00112211 110 00000 00123346999
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT 472 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~ 472 (589)
..++++|++.++++++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++++|+++||+++|||||+|+
T Consensus 384 ~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~ 463 (579)
T TIGR03457 384 RQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMS 463 (579)
T ss_pred HHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhcc
Confidence 9999999999999999999999987665 456667777799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcCCCC--CCCC-CCChHHHHHHccCCCCCccEEEeCCHHHHHHHHH
Q 007800 473 AQEISTMIRCGQRSIIFLINNGGYTIEVE----IHDGPY--NVIK-NWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMK 545 (589)
Q Consensus 473 ~~el~ta~~~~l~v~ivv~nN~~~~~~~~----~~~~~~--~~~~-~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~ 545 (589)
++||+|++||++|+++||+||++|++.+. .+++.+ .++. ++||.++|++||+ ++++|++++||+++|+
T Consensus 464 ~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~g~~v~~~~el~~al~ 538 (579)
T TIGR03457 464 MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGA-----KGVVVDKPEDVGPALK 538 (579)
T ss_pred HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHH
Confidence 99999999999999999999999998321 223322 2344 3799999999999 9999999999999999
Q ss_pred Hhhh-cCCCCeEEEEEEcCCCCChHHHHHHHH
Q 007800 546 TATG-EQKDSLCFIEVFVHKDDTSKELLEWGS 576 (589)
Q Consensus 546 ~a~~-~~~~gp~viev~~~~~~~~~~~~~~~~ 576 (589)
++++ .+.++|.||||.++++..++.-..+++
T Consensus 539 ~a~~~~~~~~p~lieV~v~~~~~~~~~~~~~~ 570 (579)
T TIGR03457 539 KAIAAQAEGKTTVIEIVCTRELGDPFRRDALS 570 (579)
T ss_pred HHHhhCCCCCcEEEEEEeCCCcCCchhhhhcc
Confidence 9985 235789999999999887665544443
No 20
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=2.1e-91 Score=775.35 Aligned_cols=522 Identities=18% Similarity=0.229 Sum_probs=431.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhcc-Cc-eEEEEeCCcchHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLS 103 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n 103 (589)
.++++|+|++.|+++||+||||+||+++.+|+++|.++++|++|.||||++|+|||+||+|+| |+ +||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N 82 (591)
T PRK11269 3 KMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (591)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence 379999999999999999999999999999999997656899999999999999999999999 98 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++|+++||.+++|||+|+|+++....+++ .+ |..||..+|+++|||+.++.+++++++.|++|++.|.++
T Consensus 83 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~ 154 (591)
T PRK11269 83 MITGLYSASADSIPILCITGQAPRARLHKE-----DF---QAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGR 154 (591)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCC-----cc---cccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999988765543 12 345789999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++..+ .....+.........+ .+.+..+++++++|.+||||+|++|.|+.++++.+++.+|+|++
T Consensus 155 ~GPV~l~iP~Dv~~~~--~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 230 (591)
T PRK11269 155 PGPVLIDLPFDVQVAE--IEFDPDTYEPLPVYKP--AATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELT 230 (591)
T ss_pred CCeEEEEeChhhhhcc--cccccccccccccCCC--CCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHh
Confidence 6999999999997642 2111111000111111 23456899999999999999999999999889999999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCC-CCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeec
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAV-SSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~-~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (589)
|+||++|++|||.||++||+++|.+ |.. +.+.+++++++||+||+||+++++..+..|..+.+..++||||.|+..++
T Consensus 231 g~PV~tt~~gkg~~p~~hpl~~G~~-g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~ 309 (591)
T PRK11269 231 GVPVIPTLMGWGAIPDDHPLMAGMV-GLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIG 309 (591)
T ss_pred CCCeEecccccCcCCCCChhhccCC-cCCCCcHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhC
Confidence 9999999999999999999999997 543 56778899999999999999999888766655556678999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhhcC------c--hhh-hhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCC
Q 007800 342 NGPSLGW----VFMADFLSALAKKLRKN------T--TAL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (589)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~------~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~ 408 (589)
+.+..+ .|+..+|++|.+.++.. + ..| ..+.+.+.... ......+.++++..+++.|++.++++.
T Consensus 310 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~l~~d~ 387 (591)
T PRK11269 310 -RVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLL-RKTHFDNVPIKPQRVYEEMNKAFGRDT 387 (591)
T ss_pred -CCCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhch-hhccCCCCCcCHHHHHHHHHHhcCCCc
Confidence 333222 48899999998877431 1 112 12211111100 001122346999999999999999999
Q ss_pred EEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeE
Q 007800 409 AVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487 (589)
Q Consensus 409 iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ 487 (589)
+++.|+|++..|. .++..+++..|+.++++|+|||++|+|||++++.|+++||+++|||||+|+++||+|+++|++|++
T Consensus 388 ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~ 467 (591)
T PRK11269 388 CYVSTIGLSQIAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPYI 467 (591)
T ss_pred EEEECCcHHHHHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCCCeE
Confidence 9999999887554 455555666788888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCchhhhhhhc----CC-----CCCCC-------CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--
Q 007800 488 IFLINNGGYTIEVEIH----DG-----PYNVI-------KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-- 549 (589)
Q Consensus 488 ivv~nN~~~~~~~~~~----~~-----~~~~~-------~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~-- 549 (589)
+||+||++|++.+..+ .. .+..+ +++||.++|++||+ ++.+|++++||+++|+++++
T Consensus 468 ~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~~~ 542 (591)
T PRK11269 468 HVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGC-----KAIRVFKPEDIAPALEQAKALM 542 (591)
T ss_pred EEEEeCCchhHHHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHhhc
Confidence 9999999999832211 11 11111 35899999999999 99999999999999999983
Q ss_pred cCCCCeEEEEEEcCCCCC
Q 007800 550 EQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 550 ~~~~gp~viev~~~~~~~ 567 (589)
.+.+||.||||.++++..
T Consensus 543 ~~~~gp~lieV~v~~~~~ 560 (591)
T PRK11269 543 AEFRVPVVVEVILERVTN 560 (591)
T ss_pred ccCCCcEEEEEEeccccC
Confidence 126899999999998764
No 21
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=1.7e-91 Score=771.30 Aligned_cols=517 Identities=23% Similarity=0.306 Sum_probs=433.4
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
|+++++|++.|+++||++|||+||+++.+|+++|.+ .+|++|.|+||++|+|||+||+|++|+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~ 79 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYD-GGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLI 79 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 578999999999999999999999999999999975 589999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-CC
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (589)
+|+++|+.+++|||+|+|+++....+++ .+ |..||..+++++|||+.++.+++++++.+++|++.|.++ +|
T Consensus 80 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 151 (548)
T PRK08978 80 TGLADALLDSVPVVAITGQVSSPLIGTD-----AF---QEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPG 151 (548)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCC-----CC---cccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998755543 22 235789999999999999999999999999999999996 69
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||+||.|++..+.+ ...+... . . ....+.++.+++++++|.+||||+|++|.|+.++++.+++.+|||++|+
T Consensus 152 PV~l~iP~dv~~~~~~--~~~~~~~-~-~--~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~ 225 (548)
T PRK08978 152 PVLVDIPKDIQLAEGE--LEPHLTT-V-E--NEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGM 225 (548)
T ss_pred cEEEecChhhhhcccc--ccccccc-c-C--CCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCC
Confidence 9999999999764322 1111110 1 0 1112345678999999999999999999999988899999999999999
Q ss_pred ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCC
Q 007800 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (589)
||++|++|||.||++||+++|.+ |..+.+..++++++||+||+||+++++..+..+..+.++.++||||.|+.+++ +.
T Consensus 226 Pv~tt~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 303 (548)
T PRK08978 226 PAVATLKGLGAVEADHPYYLGML-GMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEIN-KL 303 (548)
T ss_pred CEEEccccCCCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhC-CC
Confidence 99999999999999999999996 77788899999999999999999998877655555566678999999999886 33
Q ss_pred ccc----cccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccc
Q 007800 345 SLG----WVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFN 420 (589)
Q Consensus 345 ~~~----~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~ 420 (589)
+.. ..|++.+|++|.+.++... +...+.+.+....... .....++++..++++|++.++++.+++.|+|++..|
T Consensus 304 ~~~~~~i~~d~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~ 381 (548)
T PRK08978 304 RQAHVALQGDLNALLPALQQPLNIDA-WRQHCAQLRAEHAWRY-DHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQMW 381 (548)
T ss_pred CCCCeEEecCHHHHHHHHHHhccchH-HHHHHHHHHHhCchhc-cCCCCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHH
Confidence 322 3489999999987664322 2222211111100000 112346999999999999999999999999998765
Q ss_pred c-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 007800 421 C-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (589)
Q Consensus 421 ~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~ 499 (589)
. .++...++.+|+.++++|+|||++|+|||++++.|+++||+++|||||+|+++||+|++++++|+++||+||++|++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~ 461 (548)
T PRK08978 382 VAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMV 461 (548)
T ss_pred HHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 4 455566667799999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred hh----hcCCCC--CCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007800 500 VE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSK 569 (589)
Q Consensus 500 ~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~ 569 (589)
+. .++..+ ..+ +++||.++|++||+ ++++|++++||+++|+++++ .++|.||||.+++++.+.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV~id~~~~~~ 531 (548)
T PRK08978 462 RQWQQLFFDERYSETDLSDNPDFVMLASAFGI-----PGQTITRKDQVEAALDTLLN--SEGPYLLHVSIDELENVW 531 (548)
T ss_pred HHHHHHHhCCcceecCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecCccccc
Confidence 22 223222 233 56899999999999 99999999999999999997 889999999999877643
No 22
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.7e-91 Score=775.14 Aligned_cols=524 Identities=22% Similarity=0.276 Sum_probs=432.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhc---CCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcch
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGG 101 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~---~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~ 101 (589)
+++++|+|++.|+++||+||||+||+++.+|+|+|.+ +++|++|.|+||++|+|||+||+|+||+ +||++|+|||+
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~ 80 (572)
T PRK06456 1 MPTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGT 80 (572)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCH
Confidence 3689999999999999999999999999999999964 2469999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHh
Q 007800 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (589)
Q Consensus 102 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 181 (589)
+|+++||++||.+++|||+|+|+++....+.+ .+ |..||..+|+++|||+.++++++++++.|++|++.|.+
T Consensus 81 ~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~ 152 (572)
T PRK06456 81 TNLVTGLITAYWDSSPVIAITGQVPRSVMGKM-----AF---QEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATT 152 (572)
T ss_pred HHHHHHHHHHHhhCCCEEEEecCCCccccCCC-----Cc---cccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998765544 22 23478999999999999999999999999999999999
Q ss_pred c-CCcEEEEeCCCCCCCCCCCCCCC--CCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHH
Q 007800 182 E-SKPVYISISCNLPGIPHPTFARD--PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (589)
Q Consensus 182 ~-~gPV~i~iP~dv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~l 258 (589)
+ +|||||+||.|++..+.+..... +......+. ...+++..+++++++|.+|+||+|++|.|++++++.+++.+|
T Consensus 153 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~l 230 (572)
T PRK06456 153 GRPGPVVIDIPRDIFYEKMEEIKWPEKPLVKGYRDF--PTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLEL 230 (572)
T ss_pred CCCCcEEEecChhHhhcccccccccccccccCCCCC--CCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHH
Confidence 7 69999999999976432210000 000001110 011245678999999999999999999999998999999999
Q ss_pred HHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCC-CCceEEEcCCc
Q 007800 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHR 337 (589)
Q Consensus 259 ae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~i~id~d~ 337 (589)
+|++++||++|+++||.||++||+++|++ |..++...++++++||+||+||+++++..+..|..+.+ ..++||||.|+
T Consensus 231 ae~~~~pv~tt~~gkg~i~~~hp~~~G~~-g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~ 309 (572)
T PRK06456 231 AELLHIPIVSTFPGKTAIPHDHPLYFGPM-GYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDP 309 (572)
T ss_pred HHHhCCCEEEcCccCcCCCCCCccccccC-CCCCCHHHHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCCh
Confidence 99999999999999999999999999996 77888889999999999999999999887766654443 56899999999
Q ss_pred eeecCCCccc----cccHHHHHHHHHHHhhcCc-----hhhh-hhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCC
Q 007800 338 VTVGNGPSLG----WVFMADFLSALAKKLRKNT-----TALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGD 407 (589)
Q Consensus 338 ~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~ 407 (589)
.+++ ..+.. ..|++.+|++|.+.+.... ..|. .+...+...........+.++++..+++.|++.++++
T Consensus 310 ~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~ 388 (572)
T PRK06456 310 TDGE-KAIKVDVGIYGNAKIILRELIKAITELGQKRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPRD 388 (572)
T ss_pred HHhC-CccCCCeEEecCHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhCCCC
Confidence 9886 33322 3488999999988775321 1121 1111110000000011234699999999999999999
Q ss_pred CEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCe
Q 007800 408 TAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRS 486 (589)
Q Consensus 408 ~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v 486 (589)
++++.|+|++..|.. ++..+++.+|+.+.++|+|||++|+|||++++.|+++||+++|||||+|+++||+|+++|++|+
T Consensus 389 ~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i 468 (572)
T PRK06456 389 AIVTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPV 468 (572)
T ss_pred EEEEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHHhCCCe
Confidence 999999999876653 4455555679999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCchhhhhhh----cCCCC--CCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEE
Q 007800 487 IIFLINNGGYTIEVEI----HDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 559 (589)
Q Consensus 487 ~ivv~nN~~~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vie 559 (589)
++||+||++|++.+.. +++.+ .++ +++||.++|++||+ ++++|++.+||+++|+++++ .++|.|||
T Consensus 469 ~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIe 541 (572)
T PRK06456 469 ISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGA-----LGFNVTTYEDIEKSLKSAIK--EDIPAVIR 541 (572)
T ss_pred EEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCC-----eeEEeCCHHHHHHHHHHHHh--CCCCEEEE
Confidence 9999999999984322 22222 234 46999999999999 99999999999999999986 88999999
Q ss_pred EEcCCCCCh
Q 007800 560 VFVHKDDTS 568 (589)
Q Consensus 560 v~~~~~~~~ 568 (589)
|.+++++.+
T Consensus 542 v~v~~~~~~ 550 (572)
T PRK06456 542 VPVDKEELA 550 (572)
T ss_pred EEeCccccc
Confidence 999987644
No 23
>PLN02470 acetolactate synthase
Probab=100.00 E-value=4.7e-91 Score=771.66 Aligned_cols=522 Identities=19% Similarity=0.264 Sum_probs=429.6
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++|+|++.|+++||+||||+||+++.+|+++|.+.++|++|.||||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 12 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 91 (585)
T PLN02470 12 PRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATNL 91 (585)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 47899999999999999999999999999999999755579999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++||.+++|||+|+|+.++...+++ .++ ..|+..+++++|||++++.+++++++.|++|++.|.++ +
T Consensus 92 l~gia~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 163 (585)
T PLN02470 92 VTGLADALLDSVPLVAITGQVPRRMIGTD-----AFQ---ETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRP 163 (585)
T ss_pred HHHHHHHHhcCCcEEEEecCCChhhcCCC-----cCc---ccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998755443 222 34778999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCc-cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPF-FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
|||||+||.|++..+.......+.+. ...+.. ...+.+..+++++++|.+|+||+|++|.|+. ++.++|++|+|++
T Consensus 164 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~--~a~~~l~~lae~~ 240 (585)
T PLN02470 164 GPVLVDIPKDIQQQLAVPNWNQPMKLPGYLSRL-PKPPEKSQLEQIVRLISESKRPVVYVGGGCL--NSSEELREFVELT 240 (585)
T ss_pred CeEEEEecCchhhhhccccccccccccccCCCC-CCCCCHHHHHHHHHHHHcCCCCEEEECCChh--hhHHHHHHHHHHh
Confidence 99999999999764211100001110 000000 1122456899999999999999999999987 4778999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
++||++|+++||.||++||+++|.+ |..+.+.+++++++||+||+||+++++..+..|..+.+..++||||.|+.+++
T Consensus 241 ~~pv~tt~~gkg~~~~~hpl~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~- 318 (585)
T PLN02470 241 GIPVASTLMGLGAFPASDELSLQML-GMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIG- 318 (585)
T ss_pred CCCEEEccCccccCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999996 77888889999999999999999998887765555556678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhhcCc---hhhhhhh----hhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 007800 343 GPSLGW----VFMADFLSALAKKLRKNT---TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (589)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv 411 (589)
+.+..+ .|++.+|++|.+.+.... .....|. +........ ......++++..+++.|++.++++.+++
T Consensus 319 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~d~iv~ 397 (585)
T PLN02470 319 KNKQPHVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAELDEQKEKFPLS-YPTFGDAIPPQYAIQVLDELTDGNAIIS 397 (585)
T ss_pred CCcCCCeEEecCHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHhChhc-ccCCCCCcCHHHHHHHHHhhCCCCEEEE
Confidence 433332 488999999998876421 0111221 111010000 0111247999999999999999999999
Q ss_pred ecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEE
Q 007800 412 AETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFL 490 (589)
Q Consensus 412 ~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv 490 (589)
.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+++||+|+|||||+|+++||+|++++++|+++||
T Consensus 398 ~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v~ivV 477 (585)
T PLN02470 398 TGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMV 477 (585)
T ss_pred ECCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEE
Confidence 9999987654 455666667799999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhhhhh----cCCCC--CCCC--------CCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeE
Q 007800 491 INNGGYTIEVEI----HDGPY--NVIK--------NWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLC 556 (589)
Q Consensus 491 ~nN~~~~~~~~~----~~~~~--~~~~--------~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~ 556 (589)
+||++|++.++. ++..+ ..+. .+||.++|++||+ ++.+|++++||+++|+++++ .++|.
T Consensus 478 ~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~ 550 (585)
T PLN02470 478 LNNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKI-----PAARVTRKSDLREAIQKMLD--TPGPY 550 (585)
T ss_pred EeCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCE
Confidence 999999983221 12211 1111 2799999999999 99999999999999999997 88999
Q ss_pred EEEEEcCCCCCh
Q 007800 557 FIEVFVHKDDTS 568 (589)
Q Consensus 557 viev~~~~~~~~ 568 (589)
||||.+++.+.+
T Consensus 551 lieV~i~~~~~~ 562 (585)
T PLN02470 551 LLDVIVPHQEHV 562 (585)
T ss_pred EEEEEeCCccCc
Confidence 999999977644
No 24
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=9.3e-91 Score=767.38 Aligned_cols=522 Identities=20% Similarity=0.270 Sum_probs=434.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++++|++.|+++||+||||+||+++.+|+++|.++++|++|.++||++|+|||+||+|++|+ +||++|+|||++|+
T Consensus 12 ~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 91 (564)
T PRK08155 12 RFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNL 91 (564)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHH
Confidence 37899999999999999999999999999999999765689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++||.+++|||+|+|+++....+++ .+| ..|+..+++++|||+.++.+++++++.+++|++.|.++ +
T Consensus 92 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~ 163 (564)
T PRK08155 92 VTAIADARLDSIPLVCITGQVPASMIGTD-----AFQ---EVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRP 163 (564)
T ss_pred HHHHHHHHhcCCCEEEEeccCCcccccCC-----Ccc---ccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998755543 222 34788999999999999999999999999999999987 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+.+.. ..+.+... . ....++++.+++++++|.+||||+|++|+|+.++++.+++.+|||+++
T Consensus 164 GPV~i~iP~Dv~~~~~~~~-~~~~~~~~--~-~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~ 239 (564)
T PRK08155 164 GPVWIDIPKDVQTAVIELE-ALPAPAEK--D-AAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQ 239 (564)
T ss_pred CcEEEEcCHhHHhhhcccc-cCCCcccc--C-CCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHHC
Confidence 9999999999976422110 11111100 0 011223557899999999999999999999998889999999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (589)
+||++|+++||.||++||+++|.+ |..+.+..++++++||+||++|+++++..+..+..+.+..++||||.|+..++ +
T Consensus 240 ~pv~tt~~~kg~i~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~ 317 (564)
T PRK08155 240 LPTTMTLMALGMLPKAHPLSLGML-GMHGARSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELG-K 317 (564)
T ss_pred CCEEEcccccccCCCCChhhccCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999997 77788889999999999999999999887765555566678999999999886 3
Q ss_pred Cccc----cccHHHHHHHHHHHhhcCc-hhh-hhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcc
Q 007800 344 PSLG----WVFMADFLSALAKKLRKNT-TAL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (589)
Q Consensus 344 ~~~~----~~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~ 417 (589)
.+.. ..|++.+|++|.+.+.... ..| .++.......... ......++++..+++.|++.++++.+++.|+|++
T Consensus 318 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~v~~~l~~~l~~~~iv~~D~G~~ 396 (564)
T PRK08155 318 IKQPHVAIQADVDDVLAQLLPLVEAQPRAEWHQLVADLQREFPCP-IPKADDPLSHYGLINAVAACVDDNAIITTDVGQH 396 (564)
T ss_pred CcCCCeEEecCHHHHHHHHHHhhcccchHHHHHHHHHHHHhChhh-cccCCCCcCHHHHHHHHHHhCCCCeEEEECCchH
Confidence 3222 3489999999988775432 122 1221111010000 0112347999999999999999999999999988
Q ss_pred cccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCch
Q 007800 418 WFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496 (589)
Q Consensus 418 ~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~ 496 (589)
..|. .++..+++.+|+.++++|+||+++|+|+|++++.|+++||+++|||||+|+++||+|++++++|+++||+||++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpvi~vV~NN~~~ 476 (564)
T PRK08155 397 QMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNNEAL 476 (564)
T ss_pred HHHHHHhccccCCCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 6654 456666667799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh----hhcCCCC--CCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007800 497 TIEV----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSK 569 (589)
Q Consensus 497 ~~~~----~~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~ 569 (589)
++.+ ..+...+ ..+ .++||.++|++||+ ++++|++.+||+++|+++++ .++|.||||.+++++.+.
T Consensus 477 g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV~~~~~~~~~ 549 (564)
T PRK08155 477 GLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGL-----ETCDLNNEADPQAALQEAIN--RPGPALIHVRIDAEEKVY 549 (564)
T ss_pred cccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCCcccC
Confidence 9822 1222222 223 46899999999999 99999999999999999997 789999999999876543
No 25
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=5.8e-91 Score=767.67 Aligned_cols=524 Identities=20% Similarity=0.243 Sum_probs=433.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
++++++++|++.|+++||+||||+||+++.+|+++|.+ ++|++|.++||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N 81 (552)
T PRK08617 3 KKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALED-SGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSN 81 (552)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhh-CCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhH
Confidence 45899999999999999999999999999999999975 589999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++|+++||.+++|||+|+|+.+....+++ .+ |..||.++|+++|||+.++++++++++.|++|++.|.++
T Consensus 82 ~l~gl~~A~~~~~PvlvisG~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~ 153 (552)
T PRK08617 82 LATGLVTATAEGDPVVAIGGQVKRADRLKR-----TH---QSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGR 153 (552)
T ss_pred hHHHHHHHhhcCCCEEEEecCCcccccCCC-----Cc---cccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999888755543 12 345789999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++..+ .... .......+.. ..+.+..+++++++|.+||||+|++|.|++++++.+++.+|||++
T Consensus 154 ~GPV~l~iP~dv~~~~--~~~~-~~~~~~~~~~--~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~ 228 (552)
T PRK08617 154 PGAAFVSLPQDVVDAP--VTSK-AIAPLSKPKL--GPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERT 228 (552)
T ss_pred CCcEEEeChhhhhhcc--cccc-ccccccCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHh
Confidence 7999999999998743 2111 0110011111 112355789999999999999999999999888999999999999
Q ss_pred CCceEEccCCccCCCCCCC-CceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeec
Q 007800 263 GYPIAIMPSGKGLVPEHHP-HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~p-l~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (589)
++||+||++|||.||++|| +++|.+ |..+.+.+++++++||+||+||+++.++....|... +..++||||.|+..++
T Consensus 229 ~~pV~tt~~gkg~~~~~hp~~~~G~~-g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~ 306 (552)
T PRK08617 229 NLPVVETFQAAGVISRELEDHFFGRV-GLFRNQPGDELLKKADLVITIGYDPIEYEPRNWNSE-GDATIIHIDVLPAEID 306 (552)
T ss_pred CCCEEeccccCccCCCCCchhhccCC-cCCCcHHHHHHHHhCCEEEEecCccccccccccccC-CCCcEEEEeCChHHhC
Confidence 9999999999999999998 699986 777888899999999999999998876665445432 3468999999999886
Q ss_pred CCCcccc----ccHHHHHHHHHHHhhcCc------hhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 007800 342 NGPSLGW----VFMADFLSALAKKLRKNT------TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (589)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv 411 (589)
..+..+ .|++.+|++|.+.++... .+...|++.+.............++++..+++.|++.++++.+++
T Consensus 307 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~ 385 (552)
T PRK08617 307 -NYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIVTDDTTVT 385 (552)
T ss_pred -CccCCCeEEeCCHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHhhhhhcccCCCCcCHHHHHHHHHHhcCCCcEEE
Confidence 333332 489999999988776421 112223221111000001122346999999999999999999999
Q ss_pred ecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEE
Q 007800 412 AETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFL 490 (589)
Q Consensus 412 ~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv 490 (589)
.|.|++..|. .++...++.+++.+.++|+||+++|+|||++++.|+++||+++|||||+|+++||+|+++|++|+++||
T Consensus 386 ~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV 465 (552)
T PRK08617 386 VDVGSHYIWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVHII 465 (552)
T ss_pred eCCcHHHHHHHHhccccCCCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHHhCCCeEEEE
Confidence 9999987654 344445556688888999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhhhh----hcCC-CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007800 491 INNGGYTIEVE----IHDG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 565 (589)
Q Consensus 491 ~nN~~~~~~~~----~~~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~ 565 (589)
+||++|++.+. .+.. ...+++++||.++|++||+ ++++|++++||+++|++++. .++|.||||.++++
T Consensus 466 ~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~liev~~~~~ 538 (552)
T PRK08617 466 WNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESFGA-----KGLRVTSPDELEPVLREALA--TDGPVVIDIPVDYS 538 (552)
T ss_pred EECCccchHHHHHHhhcCCcccCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCcEEEEEEeccc
Confidence 99999998321 1111 1234567999999999999 99999999999999999986 88999999999998
Q ss_pred CChHHHH
Q 007800 566 DTSKELL 572 (589)
Q Consensus 566 ~~~~~~~ 572 (589)
+.++.+.
T Consensus 539 ~~~~~~~ 545 (552)
T PRK08617 539 DNIKLME 545 (552)
T ss_pred ccchhhh
Confidence 8876554
No 26
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=1.1e-90 Score=767.85 Aligned_cols=524 Identities=22% Similarity=0.270 Sum_probs=430.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC---CCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcch
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGG 101 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~ 101 (589)
.++++++|++.|+++||++|||+||+++.+|+|+|.+. ++|++|.||||++|+|||+||+|+||+ +||++|+|||+
T Consensus 9 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 88 (585)
T CHL00099 9 EKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGPGA 88 (585)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCCcH
Confidence 47899999999999999999999999999999999642 249999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHh
Q 007800 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (589)
Q Consensus 102 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 181 (589)
+|+++||++||.+++|||+|+|+.++...+++ .++ ..|+..+++++|||+.++.+++++++.|++||+.|.+
T Consensus 89 ~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~ 160 (585)
T CHL00099 89 TNLVTGIATAQMDSVPLLVITGQVGRAFIGTD-----AFQ---EVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKH 160 (585)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----Ccc---ccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999887755443 222 3477899999999999999999999999999999998
Q ss_pred c-CCcEEEEeCCCCCCCCCCCCCCCCCC--ccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHH
Q 007800 182 E-SKPVYISISCNLPGIPHPTFARDPVP--FFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (589)
Q Consensus 182 ~-~gPV~i~iP~dv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~l 258 (589)
+ +|||||+||.|++..+.+.....+.. ...........+.+..+++++++|.+||||+|++|+|+.++++.++|++|
T Consensus 161 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~l 240 (585)
T CHL00099 161 GRPGPVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITEL 240 (585)
T ss_pred CCCCeEEEecChhhhhhhcccccccccccccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHHH
Confidence 6 79999999999976422111110000 00111011112345689999999999999999999999998999999999
Q ss_pred HHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCce
Q 007800 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (589)
Q Consensus 259 ae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (589)
+|++|+||+||+++||.||++||+++|.+ |..+...+++++.+||+||++|+++++..+..|..+.+..++||||.|+.
T Consensus 241 ae~lg~PV~tt~~~kg~~~~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 319 (585)
T CHL00099 241 AELYKIPVTTTLMGKGIFDEDHPLCLGML-GMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPA 319 (585)
T ss_pred HHHHCCCEEEccccCcCCCCCCCcccCCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHH
Confidence 99999999999999999999999999996 77888889999999999999999999887765555556678999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhhcCc--------hhh-hhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 007800 339 TVGNGPSLGW----VFMADFLSALAKKLRKNT--------TAL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS 405 (589)
Q Consensus 339 ~~~~~~~~~~----~~~~~~l~~L~~~l~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~ 405 (589)
+++ +++..+ .|++.+|++|.+.+.... ..| ..+.+.+...... ....+.++++..++++|++.++
T Consensus 320 ~i~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~ 397 (585)
T CHL00099 320 EIG-KNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPLL-IPKPSTSLSPQEVINEISQLAP 397 (585)
T ss_pred HhC-CCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChhh-ccccCCCcCHHHHHHHHHhhCC
Confidence 887 443332 488999999988776321 111 1111111000000 0112347999999999999999
Q ss_pred CCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCC
Q 007800 406 GDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQR 485 (589)
Q Consensus 406 ~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~ 485 (589)
+.+++.|+|++..|...+...++.+|+.+.++|+|||++|+|||++++.|+++||+|+|||||+|+++||+|+++|++|
T Consensus 398 -d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~ 476 (585)
T CHL00099 398 -DAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNLP 476 (585)
T ss_pred -CeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHHhCCC
Confidence 8999999999876654332234556999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCchhhhhh----hcCCCCC----CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEE
Q 007800 486 SIIFLINNGGYTIEVE----IHDGPYN----VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCF 557 (589)
Q Consensus 486 v~ivv~nN~~~~~~~~----~~~~~~~----~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~v 557 (589)
+++||+||++|++.+. .++..+. ..+++||.++|++||+ ++++|++.+||+++|+++++ .+||.|
T Consensus 477 ~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~l 549 (585)
T CHL00099 477 IKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGI-----KGLRIKSRKDLKSSLKEALD--YDGPVL 549 (585)
T ss_pred eEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEE
Confidence 9999999999998321 2222222 1246899999999999 99999999999999999987 889999
Q ss_pred EEEEcCCCCCh
Q 007800 558 IEVFVHKDDTS 568 (589)
Q Consensus 558 iev~~~~~~~~ 568 (589)
|||++++++.+
T Consensus 550 iev~v~~~~~~ 560 (585)
T CHL00099 550 IDCQVIEDENC 560 (585)
T ss_pred EEEEECCCccc
Confidence 99999976653
No 27
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=7.4e-91 Score=764.74 Aligned_cols=518 Identities=19% Similarity=0.254 Sum_probs=428.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHH
Q 007800 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNA 107 (589)
Q Consensus 29 ~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~ 107 (589)
++++|++.|+++||+||||+||+++.+|++++.+ ++|++|.|+||++|+|||+||+|+||+ +||++|+|||++|+++|
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~g 79 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALED-KGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTG 79 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhh-CCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHH
Confidence 4799999999999999999999999999999975 689999999999999999999999999 99999999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-CCcE
Q 007800 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPV 186 (589)
Q Consensus 108 l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~gPV 186 (589)
|++|+.+++|||+|+|+.++...+.+ . ++..||..+|+++|||+.++.+++++++.+++|++.|.++ ||||
T Consensus 80 l~~A~~~~~Pvl~I~G~~~~~~~~~~-----~---~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV 151 (539)
T TIGR02418 80 LATANSEGDPVVAIGGQVKRADLLKL-----T---HQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAA 151 (539)
T ss_pred HHHHhhcCCCEEEEeCCCcccccccC-----c---ccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 99999999999999999887754433 1 2235789999999999999999999999999999999987 6999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCce
Q 007800 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (589)
Q Consensus 187 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv 266 (589)
||+||.|++.. +.... ..+....+.. ..+.+..+++++++|.+||||+|++|.|++++++.+++++|||++|+||
T Consensus 152 ~l~iP~dv~~~--~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv 226 (539)
T TIGR02418 152 FVSLPQDVVDS--PVSVK-AIPASYAPKL--GAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPV 226 (539)
T ss_pred EEEcChhHhhC--ccccc-ccCcccCCCC--CCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCE
Confidence 99999999874 32111 1110111111 1123457899999999999999999999999899999999999999999
Q ss_pred EEccCCccCCCCCC-CCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCc
Q 007800 267 AIMPSGKGLVPEHH-PHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (589)
Q Consensus 267 ~tt~~~~g~~~~~~-pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~ 345 (589)
++|++|||.||++| |+++|++ |..+++.+++++++||+||++|+++.++.+..|.. ..+.++||||.|+.+++ ..+
T Consensus 227 ~tt~~gkg~i~~~~~~~~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~-~~~ 303 (539)
T TIGR02418 227 VETFQGAGAVSRELEDHFFGRV-GLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWNS-ENDATIVHIDVEPAQID-NNY 303 (539)
T ss_pred EEccccCcCCCCCCChhhcccC-cCCCcHHHHHHHHhCCEEEEecCcccccCccccCc-CCCCeEEEEeCChHHcC-Ccc
Confidence 99999999999997 7899985 88888889999999999999999988776655652 22458999999999887 333
Q ss_pred cc----cccHHHHHHHHHHHhhcCc--h----hhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 007800 346 LG----WVFMADFLSALAKKLRKNT--T----ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (589)
Q Consensus 346 ~~----~~~~~~~l~~L~~~l~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G 415 (589)
.. ..|++.+|++|.+.++... . +...+++.+.............++++.++++.|++.+++++++++|+|
T Consensus 304 ~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G 383 (539)
T TIGR02418 304 QPDLELVGDIASTLDLLAERIPGYELPPDALAILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIVTDDVTVTVDMG 383 (539)
T ss_pred CCCeEEecCHHHHHHHHHHhhccccCccchHHHHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhCCCCCEEEECCc
Confidence 32 2488999999998775431 1 111221111000000001123469999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 007800 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (589)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~ 494 (589)
++..|. .++...++.+++.+.++++|||++|+|||+++|.|+++||+++|||||+|+++||+|+++|++|+++||+||+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN~ 463 (539)
T TIGR02418 384 SHYIWMARYFRSYRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHIIWNDN 463 (539)
T ss_pred HHHHHHHHhcccCCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEEEEECC
Confidence 987664 3455555666889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhh----hcCC-CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007800 495 GYTIEVE----IHDG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSK 569 (589)
Q Consensus 495 ~~~~~~~----~~~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~ 569 (589)
+|++.+. .++. ...+++++||.++|++||+ ++.+|++++||+++|+++++ .++|.||||.+++++.+.
T Consensus 464 ~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~a~~--~~~p~lIev~v~~~~~~~ 536 (539)
T TIGR02418 464 GYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGA-----KGLRVESPDQLEPTLRQAME--VEGPVVVDIPVDYSDNPK 536 (539)
T ss_pred cchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecCccccc
Confidence 9998321 1221 1234568999999999999 99999999999999999987 889999999999888765
Q ss_pred H
Q 007800 570 E 570 (589)
Q Consensus 570 ~ 570 (589)
.
T Consensus 537 ~ 537 (539)
T TIGR02418 537 L 537 (539)
T ss_pred c
Confidence 4
No 28
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.2e-90 Score=767.05 Aligned_cols=523 Identities=20% Similarity=0.245 Sum_probs=434.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++|+|++.|+++||+||||+||+++.+|++++.+ .++++|.++||++|+|||+||+|++|+ +||++|+|||++|+
T Consensus 15 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~ 93 (571)
T PRK07710 15 LMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYD-CGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATNV 93 (571)
T ss_pred cchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 4789999999999999999999999999999999975 589999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++||.+++|||+|+|+++....+++ .+ |..||..+++++|||++++.+++++++.|++|++.|.++ +
T Consensus 94 ~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 165 (571)
T PRK07710 94 VTGLADAMIDSLPLVVFTGQVATSVIGSD-----AF---QEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRP 165 (571)
T ss_pred HHHHHHHhhcCCCEEEEeccCCccccCCC-----Cc---cccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998755543 22 235789999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+.+.......+... ..+...+++..+++++++|.+|+||+|++|.|+.++++.++|.+|+|++|
T Consensus 166 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~ 243 (571)
T PRK07710 166 GPVLIDIPKDMVVEEGEFCYDVQMDLPG--YQPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQE 243 (571)
T ss_pred CcEEEEcChhHhhccccccccccccccC--CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHHHhC
Confidence 9999999999976422110000001100 00111234567899999999999999999999988889999999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (589)
+||+||+++||.||++||+++|.+ |..+.+.+++++++||+||+||+++++..+..|..+.++.++||||.|+..++ +
T Consensus 244 ~pv~tt~~~kg~i~~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig-~ 321 (571)
T PRK07710 244 IPVVHTLLGLGGFPADHPLFLGMA-GMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIG-K 321 (571)
T ss_pred CCEEEcCccCccCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhc-C
Confidence 999999999999999999999995 88889999999999999999999998877755555566678999999999887 3
Q ss_pred Cccc----cccHHHHHHHHHHHhhcCc--hhh-hhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 007800 344 PSLG----WVFMADFLSALAKKLRKNT--TAL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (589)
Q Consensus 344 ~~~~----~~~~~~~l~~L~~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~ 416 (589)
.+.. ..|++.+|++|.+.+.... ..| ..+++.+...... ......++++..+++.|++.++++.+++.|+|+
T Consensus 322 ~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~ 400 (571)
T PRK07710 322 NVPTEIPIVADAKQALQVLLQQEGKKENHHEWLSLLKNWKEKYPLS-YKRNSESIKPQKAIEMLYEITKGEAIVTTDVGQ 400 (571)
T ss_pred cCCCCeEEecCHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhChhh-hcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH
Confidence 3322 2489999999988775421 122 1121111000000 011134699999999999999999999999999
Q ss_pred ccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCc
Q 007800 417 SWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGG 495 (589)
Q Consensus 417 ~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~ 495 (589)
+..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+++||+++|||||+|+++||+|+++|++|+++||+||++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN~~ 480 (571)
T PRK07710 401 HQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNNEA 480 (571)
T ss_pred HHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEECch
Confidence 87654 44566666779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh----hcCCCCC--CC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 496 YTIEVE----IHDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 496 ~~~~~~----~~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
|++.+. .++..+. .+ .++||.++|++||+ ++++|++.++|+++++++++ .++|.||||.+++++.+
T Consensus 481 ~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lieV~vd~~~~~ 553 (571)
T PRK07710 481 LGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGI-----KGVRIDDELEAKEQLQHAIE--LQEPVVIDCRVLQSEKV 553 (571)
T ss_pred HHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecCcccc
Confidence 998432 1233222 22 46899999999999 99999999999999999986 88999999999987754
Q ss_pred H
Q 007800 569 K 569 (589)
Q Consensus 569 ~ 569 (589)
.
T Consensus 554 ~ 554 (571)
T PRK07710 554 M 554 (571)
T ss_pred c
Confidence 3
No 29
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=2.1e-90 Score=767.52 Aligned_cols=518 Identities=20% Similarity=0.243 Sum_probs=425.6
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC-CCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
++++|+|++.|+++||+||||+||+++.+|+|+|.+. ++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 3 ~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 82 (597)
T PRK08273 3 QTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHL 82 (597)
T ss_pred ccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 7899999999999999999999999999999999753 469999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcce-eEEEEeCChhhHHHHHHHHHHHhHhcC
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAISTALKES 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (589)
++||++||.+++|||+|+|++++...+++ .++ ..|+.++|+++| ||+.++.+++++++.|++|++.|++++
T Consensus 83 ~~gi~~A~~d~vPvl~I~G~~~~~~~~~~-----~~q---~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~ 154 (597)
T PRK08273 83 LNGLYDAKLDHVPVVAIVGQQARAALGGH-----YQQ---EVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER 154 (597)
T ss_pred HHHHHHHHhcCCCEEEEecCCchhhcCCC-----CCC---ccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998765554 222 246789999999 999999999999999999999999988
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCC--CCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHH
Q 007800 184 KPVYISISCNLPGIPHPTFARDP--VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~ 261 (589)
|||||+||.|++..+.+...... .............+++..+++++++|.+||||+|++|.|+. ++.+++.+|||+
T Consensus 155 gPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~--~a~~~l~~lae~ 232 (597)
T PRK08273 155 TVTAVILPNDVQELEYEPPPHAHGTVHSGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGAL--GATDEVIAVAER 232 (597)
T ss_pred CCEEEEeCcchhhCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEECcchH--hHHHHHHHHHHH
Confidence 99999999999863211100000 00000000011123567899999999999999999999996 588999999999
Q ss_pred hCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeec
Q 007800 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 262 ~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (589)
+++||+||++|||.||++||+++|++ |..+++.+++++++||+||+||++++... +....++.++||||.|+.+++
T Consensus 233 ~~~PV~tt~~gkg~~~e~hp~~~G~~-G~~g~~~a~~~~~~aDlvl~lG~~~~~~~---~~~~~~~~~~i~Id~d~~~~~ 308 (597)
T PRK08273 233 LGAGVAKALLGKAALPDDLPWVTGSI-GLLGTKPSYELMRECDTLLMVGSSFPYSE---FLPKEGQARGVQIDIDGRMLG 308 (597)
T ss_pred hCCceeecccCcccCCCCCccceecC-CCCccHHHHHHHHhCCEEEEeCCCCCHHh---cCCCCCCCeEEEEeCCHHHcC
Confidence 99999999999999999999999996 88899999999999999999999875321 111123468999999999886
Q ss_pred CCCccc----cccHHHHHHHHHHHhhcCc-hhh-hhh---hhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 007800 342 NGPSLG----WVFMADFLSALAKKLRKNT-TAL-ENY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (589)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~~~-~~~-~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~ 412 (589)
+.+.. ..|++.+|++|.+.++... ..| ..+ ++.+...........+.++++..+++.|++.+++++++++
T Consensus 309 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~~ivv~ 387 (597)
T PRK08273 309 -LRYPMEVNLVGDAAETLRALLPLLERKKDRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPDNAILTA 387 (597)
T ss_pred -CCCCCCceEecCHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhCCCCeEEEE
Confidence 33222 2489999999998876432 112 111 1111001100111223479999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc-HHHHHHHHHh-----CCC
Q 007800 413 ETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMIRC-----GQR 485 (589)
Q Consensus 413 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~~el~ta~~~-----~l~ 485 (589)
|+|++..|. .++..+++.+++.++++|+|||++|+|||+++|.|+++||+|+|||||+|+ ++||+|+++| ++|
T Consensus 388 d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lp 467 (597)
T PRK08273 388 DSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPR 467 (597)
T ss_pred CCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCC
Confidence 999986554 456666677799999999999999999999999999999999999999999 7999999999 999
Q ss_pred eEEEEEeCCchhhhh----hhcCCC----CCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEE
Q 007800 486 SIIFLINNGGYTIEV----EIHDGP----YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCF 557 (589)
Q Consensus 486 v~ivv~nN~~~~~~~----~~~~~~----~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~v 557 (589)
+++||+||++|++.+ ..+++. +.+++++||.++|++||+ ++++|++.+||+++|+++++ .++|+|
T Consensus 468 viivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~l 540 (597)
T PRK08273 468 LIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGL-----KGIRVDDPEQLGAAWDEALA--ADRPVV 540 (597)
T ss_pred EEEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHHHHh--CCCCEE
Confidence 999999999999822 122221 234578999999999999 99999999999999999997 899999
Q ss_pred EEEEcCCCC
Q 007800 558 IEVFVHKDD 566 (589)
Q Consensus 558 iev~~~~~~ 566 (589)
|||.+++++
T Consensus 541 IeV~~~~~~ 549 (597)
T PRK08273 541 LEVKTDPNV 549 (597)
T ss_pred EEEEeCCCC
Confidence 999999876
No 30
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=7.6e-90 Score=759.96 Aligned_cols=516 Identities=22% Similarity=0.325 Sum_probs=425.6
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC-CCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
.++++++|++.|+++||+||||+||+++.+|+++|.++ ++|++|.++||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 82 (576)
T PRK08611 3 KIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIH 82 (576)
T ss_pred CCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHH
Confidence 47999999999999999999999999999999999753 579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcC
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (589)
+++|+++||.+++|||+|+|+++....+++. + |..||.++|+++|||++++.+++++++.+++|++.|.+++
T Consensus 83 ~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~-----~---q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~ 154 (576)
T PRK08611 83 LLNGLYDAKMDHVPVLALAGQVTSDLLGTDF-----F---QEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK 154 (576)
T ss_pred HHHHHHHHhhcCCCEEEEecCCcccccCCCC-----c---cccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999988655542 2 2347899999999999999999999999999999999989
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+.+.......+. ..+ ....++++.+++++++|++||||+|++|+|++ ++.+++.+|+|+++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~~~ 229 (576)
T PRK08611 155 GVAVLTIPDDLPAQKIKDTTNKTVDT-FRP--TVPSPKPKDIKKAAKLINKAKKPVILAGLGAK--HAKEELLAFAEKAK 229 (576)
T ss_pred CCEEEEeChhhhhccccccccccccc-CCC--CCCCCCHHHHHHHHHHHHcCCCcEEEECcCcc--hHHHHHHHHHHHhC
Confidence 99999999999764321100000110 100 11123456789999999999999999999997 46789999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (589)
+||++|+++||.||++||+++|.+ |..+...+++++++||+||+||++++... | +.+..++||||.|+.+++ +
T Consensus 230 ~PV~tt~~gkg~~~~~hp~~~G~~-g~~~~~~a~~~l~~aDlvl~iG~~~~~~~---~--~~~~~~~i~id~d~~~i~-~ 302 (576)
T PRK08611 230 IPIIHTLPAKGIIPDDHPYSLGNL-GKIGTKPAYEAMQEADLLIMVGTNYPYVD---Y--LPKKAKAIQIDTDPANIG-K 302 (576)
T ss_pred CCEEEccccccccCCCCccccccC-CCCCcHHHHHHHHhCCEEEEeCCCCCccc---c--CCCCCcEEEEeCCHHHcC-C
Confidence 999999999999999999999986 77888889999999999999999875321 1 233468999999999887 4
Q ss_pred Cccc----cccHHHHHHHHHHHhhcCch--hhhhhh---hhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 007800 344 PSLG----WVFMADFLSALAKKLRKNTT--ALENYR---RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414 (589)
Q Consensus 344 ~~~~----~~~~~~~l~~L~~~l~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~ 414 (589)
.+.. ..|++.+|++|.+.++.... +.+.+. +.............+.++++..+++.|++.+++++++++|+
T Consensus 303 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~ivv~d~ 382 (576)
T PRK08611 303 RYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIADDDAVLSVDV 382 (576)
T ss_pred ccCCCeeEecCHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhcCCCeEEEEcC
Confidence 3332 24889999999988764321 111111 11000000001122346999999999999999999999999
Q ss_pred Ccccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeC
Q 007800 415 GDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493 (589)
Q Consensus 415 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN 493 (589)
|++..|. .++..+++.+|+.+.++|+||+++|+|||++++.|+++||+++|||||+|+++||+|+++|++|+++||+||
T Consensus 383 G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~NN 462 (576)
T PRK08611 383 GTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNN 462 (576)
T ss_pred hHHHHHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCCCeEEEEEeC
Confidence 9987664 445666666799899999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchhhhhh---hcC-CC-CCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 494 GGYTIEVE---IHD-GP-YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 494 ~~~~~~~~---~~~-~~-~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
++|++.+. ... .. ...+.++||.++|++||+ ++++|++++||+++|+++++ .++|.||||.+++.+.+
T Consensus 463 ~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIeV~vd~~~~~ 535 (576)
T PRK08611 463 QQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGG-----KGYRVEKAEELDPAFEEALA--QDKPVIIDVYVDPNAAP 535 (576)
T ss_pred CcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCcccC
Confidence 99998321 111 12 234568999999999999 99999999999999999997 79999999999977643
No 31
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=7.1e-90 Score=762.43 Aligned_cols=526 Identities=21% Similarity=0.259 Sum_probs=432.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++++|++.|+++||++|||+||+++.+|++++.++++|++|.|+||++|+|||+||+|++|+ +||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~ 82 (574)
T PRK06882 3 KLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHH
Confidence 37899999999999999999999999999999999764589999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++||.+++|||+|+|+++....+++ .+ |..||..+++++|||+.++.+++++++.|++|++.|.++ +
T Consensus 83 l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (574)
T PRK06882 83 ITGIATAYTDSVPLVILSGQVPSNLIGTD-----AF---QECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRP 154 (574)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCC-----cc---cccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998755443 22 235789999999999999999999999999999999986 7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++....+.....+......+..+...+.+..+++++++|.+||||+|++|.|+.++++.++|.+|+|+++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~ 234 (574)
T PRK06882 155 GPVVIDIPKDMVNPANKFTYEYPEEVSLRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLN 234 (574)
T ss_pred CCEEEecCHHHhhhhcccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhC
Confidence 99999999999763211000000000000001101124567999999999999999999999998889999999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (589)
+||++|++|||+||++||+++|++ |..+++.+++++++||+||+||+++++..+..|..+.+..++||||.|+..++ .
T Consensus 235 ~pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~ 312 (574)
T PRK06882 235 LPVTSSLMGLGAYPSTDKQFLGML-GMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSIS-K 312 (574)
T ss_pred CCEEEcCccCcCCCCCChhhcCCC-cccccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhc-C
Confidence 999999999999999999999997 88888999999999999999999999888766655566678999999999886 3
Q ss_pred Cccc----cccHHHHHHHHHHHhhcCc--------h-hhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 007800 344 PSLG----WVFMADFLSALAKKLRKNT--------T-ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (589)
Q Consensus 344 ~~~~----~~~~~~~l~~L~~~l~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~ii 410 (589)
.+.. ..|++.+|++|.+.+.... . +++.+.+.+.... ........++++..+++.|++.++++.++
T Consensus 313 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~~l~~~~ii 391 (574)
T PRK06882 313 NVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKC-LEFDRTSDVIKPQQVVEAIYRLTNGDAYV 391 (574)
T ss_pred ccCCceEEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhCh-hhhccCCCCcCHHHHHHHHHhhcCCCeEE
Confidence 3222 2488999999988775321 1 1111111111110 00011133689999999999999999999
Q ss_pred EecCCccccc-cccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEE
Q 007800 411 IAETGDSWFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIF 489 (589)
Q Consensus 411 v~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~iv 489 (589)
+.|+|++..| ..++..+++.+|+.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++|
T Consensus 392 ~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv~~v 471 (574)
T PRK06882 392 ASDVGQHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIV 471 (574)
T ss_pred EecCchhHHHHHHhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 9999998655 345566666679988999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCchhhhhh----hcCCCC--CCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007800 490 LINNGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 562 (589)
Q Consensus 490 v~nN~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~ 562 (589)
|+||++|++.+. .+++.+ ..+ .++||.++|++||+ ++++|++.++|+++|+++++ ..++|.||||.+
T Consensus 472 V~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~eL~~al~~a~~-~~~~p~liev~i 545 (574)
T PRK06882 472 SLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGH-----VGIQIDTPDELEEKLTQAFS-IKDKLVFVDVNV 545 (574)
T ss_pred EEECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh-cCCCcEEEEEEe
Confidence 999999998322 222222 122 35799999999999 99999999999999999985 237899999999
Q ss_pred CCCCCh
Q 007800 563 HKDDTS 568 (589)
Q Consensus 563 ~~~~~~ 568 (589)
++++.+
T Consensus 546 ~~~~~~ 551 (574)
T PRK06882 546 DETEHV 551 (574)
T ss_pred cCcccc
Confidence 977654
No 32
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=5.9e-90 Score=760.65 Aligned_cols=523 Identities=22% Similarity=0.287 Sum_probs=434.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
|+++++|++.|+++||+||||+||+++.+|+++|.++++|++|.|+||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 5789999999999999999999999999999999766789999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-CC
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (589)
+||++|+.+++|||+|+|++++...+.+ .+ |..||..+++++|||+.++++++++++.|++|++.|.++ +|
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~G 152 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSD-----AF---QEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPG 152 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCC-----CC---cccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999988755543 22 235789999999999999999999999999999999997 69
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||+||.|++..+.+.......+. ....+...+.+..+++++++|.+||||+|++|+|++++++.++|.+|+|++++
T Consensus 153 PV~i~iP~dv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~ 230 (558)
T TIGR00118 153 PVLVDLPKDVTTAEIEYPYPEKVNL--PGYRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQI 230 (558)
T ss_pred eEEEEcChhhhhhhccccccccccc--cCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCC
Confidence 9999999999764211110100100 00011112234578999999999999999999999998899999999999999
Q ss_pred ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCC
Q 007800 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (589)
||++|+++||.||++||+++|.+ |..+.+.+++++++||+||+||+++++..+..|..+.++.++||||.|+..++ ..
T Consensus 231 pv~tt~~~kg~~~e~hp~~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 308 (558)
T TIGR00118 231 PVTTTLMGLGSFPEDHPLSLGML-GMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIG-KN 308 (558)
T ss_pred CEEEccccCCCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhC-Cc
Confidence 99999999999999999999996 78888899999999999999999999887766665666678999999998876 33
Q ss_pred ccc----cccHHHHHHHHHHHhhcC----chhhhh-hhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 007800 345 SLG----WVFMADFLSALAKKLRKN----TTALEN-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (589)
Q Consensus 345 ~~~----~~~~~~~l~~L~~~l~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G 415 (589)
+.. ..|+..+|++|.+.+... ...|.+ .++.+.... ......+.++++..+++.|++.++++++++.|+|
T Consensus 309 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g 387 (558)
T TIGR00118 309 VRVDIPIVGDARNVLEELLKKLFELKERKESAWLEQINKWKKEYP-LKMDYTEEGIKPQQVIEELSRVTKDEAIVTTDVG 387 (558)
T ss_pred CCCCeEEecCHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHhCh-hhccCCCCCcCHHHHHHHHHhhCCCCeEEEeCCc
Confidence 322 348899999999887542 112211 111111100 0011123469999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 007800 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (589)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~ 494 (589)
++..|. .++..+++..|+.++++|+|||++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||+
T Consensus 388 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~vv~NN~ 467 (558)
T TIGR00118 388 QHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKILILNNR 467 (558)
T ss_pred HHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 886554 4556666677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhh----hhcCCCCC--CC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 495 GYTIEV----EIHDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 495 ~~~~~~----~~~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
+|++.. ..+...+. .. +++||.++|++||+ ++++|++.++|+++|+++++ .++|+||||++++++.
T Consensus 468 ~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~~p~liev~~~~~~~ 540 (558)
T TIGR00118 468 YLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGI-----KGIRIEKPEELDEKLKEALS--SNEPVLLDVVVDKPEN 540 (558)
T ss_pred chHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEeCCccc
Confidence 999832 12222221 22 36899999999999 99999999999999999997 7899999999997765
Q ss_pred hH
Q 007800 568 SK 569 (589)
Q Consensus 568 ~~ 569 (589)
+.
T Consensus 541 ~~ 542 (558)
T TIGR00118 541 VL 542 (558)
T ss_pred cc
Confidence 43
No 33
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=6.8e-90 Score=757.54 Aligned_cols=506 Identities=20% Similarity=0.282 Sum_probs=417.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
++++++|++.|+++||+||||+||+++.+|+|++.+ .+|++|.++||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~-~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l 80 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRK-SKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLL 80 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHh-cCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhH
Confidence 689999999999999999999999999999999975 469999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCc
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gP 185 (589)
+|+++||.+++|||+|+|+++....+++ ..| ..||.++|+++|||+.++++++++++.|++|++.|++++||
T Consensus 81 ~~l~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~GP 152 (549)
T PRK06457 81 NGLYDAKMDHAPVIALTGQVESDMIGHD-----YFQ---EVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRGV 152 (549)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCC-----ccc---ccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999987754443 333 35789999999999999999999999999999999998899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 186 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
|||+||.|++....+. . .......+ . +.....+++++++|++||||+|++|.|++ ++.+++.+|||++++|
T Consensus 153 V~l~iP~Dv~~~~~~~--~-~~~~~~~~-~---~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~P 223 (549)
T PRK06457 153 AHINLPVDILRKSSEY--K-GSKNTEVG-K---VKYSIDFSRAKELIKESEKPVLLIGGGTR--GLGKEINRFAEKIGAP 223 (549)
T ss_pred EEEEeCHhHhhccccc--c-cccccCCC-C---CCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHHCCC
Confidence 9999999997642211 1 11100001 1 11124688999999999999999999997 4779999999999999
Q ss_pred eEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCc
Q 007800 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (589)
Q Consensus 266 v~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~ 345 (589)
|++|++|||.||++||+++|.+ |..+++.+++++++||+||++|++++... | +.+..++||||.|+.+++ +.+
T Consensus 224 V~tt~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~---~--~~~~~~ii~id~d~~~~~-~~~ 296 (549)
T PRK06457 224 IIYTLNGKGILPDLDPKVMGGI-GLLGTKPSIEAMDKADLLIMLGTSFPYVN---F--LNKSAKVIQVDIDNSNIG-KRL 296 (549)
T ss_pred EEEcccccccCCCCChhhccCC-CCCCCHHHHHHHHhCCEEEEECCCCChhh---c--CCCCCcEEEEeCCHHHhC-CCC
Confidence 9999999999999999999996 77888899999999999999999876432 1 233568999999999886 433
Q ss_pred ccc----ccHHHHHHHHHHHhhcCc-h----hhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 007800 346 LGW----VFMADFLSALAKKLRKNT-T----ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (589)
Q Consensus 346 ~~~----~~~~~~l~~L~~~l~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~ 416 (589)
..+ .|++.+|+.+........ . ....|.+..... ....+.++++..++++|++.++++++++.|+|+
T Consensus 297 ~~~~~i~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~g~ 372 (549)
T PRK06457 297 DVDLSYPIPVAEFLNIDIEEKSDKFYEELKGKKEDWLDSISKQ----ENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGN 372 (549)
T ss_pred CCCeEEecCHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHh----hcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH
Confidence 333 488899965432211100 0 011232111000 011234799999999999999999999999999
Q ss_pred ccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcC-CCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 007800 417 SWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAK-DKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (589)
Q Consensus 417 ~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~-~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~ 494 (589)
+..|. .++..+++.+++.+.++|+|||++|+|+|+++++| +++||+++|||||+|+++||+|+++|++|+++||+||+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN~ 452 (549)
T PRK06457 373 VTMWTARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNS 452 (549)
T ss_pred HHHHHHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEEEEECC
Confidence 87654 34555556679999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred chhhhhh---hcC--CCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 495 GYTIEVE---IHD--GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 495 ~~~~~~~---~~~--~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
+|++.+. .+. ....++.++||.++|++||+ ++++|++++||+++|+++++ .++|.||||.+++++.+
T Consensus 453 ~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV~i~~~~~~ 524 (549)
T PRK06457 453 KLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGF-----KGFRLEEPKEAEEIIEEFLN--TKGPAVLDAIVDPNERP 524 (549)
T ss_pred ccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCccccC
Confidence 9998321 111 12345567899999999999 99999999999999999997 88999999999987754
No 34
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.1e-89 Score=760.72 Aligned_cols=521 Identities=22% Similarity=0.326 Sum_probs=432.0
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
++++|+|++.|+++||++|||+||+++.+|+++|.+ .+|++|.|+||++|+|||+||+|++|+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l 79 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYD-SDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLV 79 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHh-CCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHH
Confidence 578999999999999999999999999999999975 489999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-CC
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (589)
+||++||.+++|||+|+|+.+....+.+ .++ ..||.++++++|||+.++++++++++.|++|++.|.++ +|
T Consensus 80 ~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~G 151 (586)
T PRK06276 80 TGIATAYADSSPVIALTGQVPTKLIGND-----AFQ---EIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPG 151 (586)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCC-----CCc---cccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999988755443 222 35789999999999999999999999999999999997 69
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCcc--CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFF--LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
||||+||.|++..+.+... .+.+.. .....+...+.+..+++++++|.+||||+|++|.|++++++.+++.+|+|++
T Consensus 152 PV~l~iP~Dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 230 (586)
T PRK06276 152 PVHIDLPKDVQEGELDLEK-YPIPAKIDLPGYKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELV 230 (586)
T ss_pred cEEEEcChhHHhhhhcccc-ccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHH
Confidence 9999999999764211100 011000 0000011122356799999999999999999999999888999999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
++||++|+++||.||++||+++|.+ |..+.+..++++++||+||+||+++++..+..+..+.+..++||||.|+.+++
T Consensus 231 ~~pv~tt~~~kg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 308 (586)
T PRK06276 231 KIPVCTTLMGKGAFPEDHPLALGMV-GMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIG- 308 (586)
T ss_pred CCCEEEcCCCCccCCCCCcccccCC-CCCCCHHHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999996 88888999999999999999999998887766655566678999999998886
Q ss_pred CCccc----cccHHHHHHHHHHHhhcCc----hhhhh-hhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCC-----CC
Q 007800 343 GPSLG----WVFMADFLSALAKKLRKNT----TALEN-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG-----DT 408 (589)
Q Consensus 343 ~~~~~----~~~~~~~l~~L~~~l~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~-----~~ 408 (589)
.++.. ..|++.+|++|.+.+.... ..|.+ +.+.... ..+.....+.++++..++++|++.+++ ++
T Consensus 309 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~ 387 (586)
T PRK06276 309 KNVRVDVPIVGDAKNVLRDLLAELMKKEIKNKSEWLERVKKLKKE-SIPRMDFDDKPIKPQRVIKELMEVLREIDPSKNT 387 (586)
T ss_pred CcCCCceEEecCHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHh-ccccccCCCCCcCHHHHHHHHHHhccccCCCCCe
Confidence 33322 2489999999998875421 11211 1111100 001111123469999999999999998 99
Q ss_pred EEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeE
Q 007800 409 AVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487 (589)
Q Consensus 409 iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ 487 (589)
+++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||++++.|+++||+++|||||+|+++||+|++++++|++
T Consensus 388 iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ 467 (586)
T PRK06276 388 IITTDVGQNQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVV 467 (586)
T ss_pred EEEeCCcHHHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHHhCCCeE
Confidence 9999999887664 345556667799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCchhhhh----hhcCCCC--CCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007800 488 IFLINNGGYTIEV----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560 (589)
Q Consensus 488 ivv~nN~~~~~~~----~~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev 560 (589)
+||+||++|++.. ..++..+ .++ +++||.++|++||+ ++++|++++||+++|+++++ .++|.||||
T Consensus 468 ~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV 540 (586)
T PRK06276 468 ICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESYGV-----KADRVEKPDEIKEALKEAIK--SGEPYLLDI 540 (586)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 9999999999822 2223322 344 46999999999999 99999999999999999986 889999999
Q ss_pred EcCCCCC
Q 007800 561 FVHKDDT 567 (589)
Q Consensus 561 ~~~~~~~ 567 (589)
.+++.+.
T Consensus 541 ~i~~~~~ 547 (586)
T PRK06276 541 IIDPAEA 547 (586)
T ss_pred Eeccccc
Confidence 9987653
No 35
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=8.5e-90 Score=755.64 Aligned_cols=515 Identities=21% Similarity=0.276 Sum_probs=423.3
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
++++++|+|++.|+++||++|||+||+++.++++++.+ .+|++|.|+||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n 81 (542)
T PRK05858 3 QTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGARE-EGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTN 81 (542)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHH
Confidence 46899999999999999999999999999999999975 579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++||++||.+++|||+|+|+.+....+++. .| ..||..+++++|||+.++++++++++.+++|++.|.++
T Consensus 82 ~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~-----~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 153 (542)
T PRK05858 82 GMSAMAAAQFNQSPLVVLGGRAPALRWGMGS-----LQ---EIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPH 153 (542)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcccCCCCC-----Cc---ccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999987655542 22 35789999999999999999999999999999999986
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++..+.+.. ..+.+..... ....+++..+++++++|.+||||+|++|.|++++++.+++.+|||++
T Consensus 154 ~GPV~l~iP~dv~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~l 230 (542)
T PRK05858 154 RGPVFVDFPMDHAFSMADDD-GRPGALTELP--AGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEEL 230 (542)
T ss_pred CCeEEEEcChhhhhcccccc-ccccccccCC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHh
Confidence 79999999999987432111 0111110000 01123456899999999999999999999999888999999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
|+||+||++|||.||++||+++|. ..++++++||+||+||+++++..+.++ +.++.++||||.|+.+++
T Consensus 231 g~pV~tt~~~kg~~~~~hpl~~~~--------~~~~~l~~aD~vl~vG~~~~~~~~~~~--~~~~~~~i~id~d~~~~~- 299 (542)
T PRK05858 231 GIPVLMNGMGRGVVPADHPLAFSR--------ARGKALGEADVVLVVGVPMDFRLGFGV--FGGTAQLVHVDDAPPQRA- 299 (542)
T ss_pred CCCEEEcCCcCCCCCCCCchhhhH--------HHHHHHHhCCEEEEECCCCcccccccc--cCCCCEEEEECCCHHHhc-
Confidence 999999999999999999999864 467889999999999999876544332 344568999999998886
Q ss_pred CCccc----cccHHHHHHHHHHHhhcCch---hhhhhhhhcC---CCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 007800 343 GPSLG----WVFMADFLSALAKKLRKNTT---ALENYRRIYV---PPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (589)
Q Consensus 343 ~~~~~----~~~~~~~l~~L~~~l~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~ 412 (589)
..+.. ..|++.+|++|.+.+..... +...+.+.+. ............++++..+++.|++.++++.+++.
T Consensus 300 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~ 379 (542)
T PRK05858 300 HHRPVAAGLYGDLSAILSALAGAGGDRTDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVIG 379 (542)
T ss_pred CCCCCceEEeCCHHHHHHHHHHhcccccCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEEE
Confidence 32222 24899999999988764211 1111111110 00000111223479999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 007800 413 ETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (589)
Q Consensus 413 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~ 491 (589)
|.|++..|. .++...++..|+.+.++|+|||++|+|||++++.|+++||+++|||||+|+++||+|+++|++|+++||+
T Consensus 380 d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV~ 459 (542)
T PRK05858 380 DGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIG 459 (542)
T ss_pred CCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEEEE
Confidence 999876543 4455555556888889999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhhh----hcCC-CCCCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007800 492 NNGGYTIEVE----IHDG-PYNVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 565 (589)
Q Consensus 492 nN~~~~~~~~----~~~~-~~~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~ 565 (589)
||++|++.+. .+.. ...++ +++||.++|++||+ ++.+|++++||+++|+++++ .++|+||||.++++
T Consensus 460 NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~~~~~ 532 (542)
T PRK05858 460 NNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGG-----HGELVTVPAELGPALERAFA--SGVPYLVNVLTDPS 532 (542)
T ss_pred eCCchhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCcEEEEEEECCC
Confidence 9999998321 1221 22233 67999999999999 99999999999999999997 88999999999988
Q ss_pred CChH
Q 007800 566 DTSK 569 (589)
Q Consensus 566 ~~~~ 569 (589)
+.++
T Consensus 533 ~~~~ 536 (542)
T PRK05858 533 VAYP 536 (542)
T ss_pred cCCC
Confidence 6544
No 36
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=8.1e-90 Score=758.80 Aligned_cols=518 Identities=21% Similarity=0.295 Sum_probs=428.6
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++|+|++.|+++||+||||+||+++.+|+++|.++++|++|.|+||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 7 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 86 (557)
T PRK08199 7 ARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNA 86 (557)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHH
Confidence 47899999999999999999999999999999999876679999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++||.+++|||+|+|+++....+++. +| ..||..+|+++|||+.++.+++++++.++||++.|.++ +
T Consensus 87 ~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-----~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~ 158 (557)
T PRK08199 87 SIGVHTAFQDSTPMILFVGQVARDFREREA-----FQ---EIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRP 158 (557)
T ss_pred HHHHHHHhhcCCCEEEEecCCccccCCCCc-----cc---ccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987665542 22 35789999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+ ........ ..+.. ..++++.+++++++|.+||||+|++|+|+.++++.++|.+|+|+++
T Consensus 159 GPV~l~iP~dl~~~~--~~~~~~~~--~~~~~--~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~ 232 (557)
T PRK08199 159 GPVVLALPEDVLSET--AEVPDAPP--YRRVA--AAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWG 232 (557)
T ss_pred CcEEEEcCHhHhhCc--ccccccCC--cCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhC
Confidence 999999999997642 21111001 11111 1234567999999999999999999999998889999999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccC---CCCceEEEcCCceee
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI---KKEKAIIVQPHRVTV 340 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~---~~~~~i~id~d~~~~ 340 (589)
+||++|+++||+||++||+++|.+ |..+++.+++++++||+||+||+++++..+..|..+. +..++||||.|+..+
T Consensus 233 ~pV~tt~~~kg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~ 311 (557)
T PRK08199 233 LPVACAFRRQDLFDNRHPNYAGDL-GLGINPALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEEL 311 (557)
T ss_pred CCEEEcCCcCCCCCCCChhhccCC-cCcCCHHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHh
Confidence 999999999999999999999985 7777888999999999999999999888765554332 456899999999988
Q ss_pred cCCCccc----cccHHHHHHHHHHHhhcCchhhhhhh----hhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 007800 341 GNGPSLG----WVFMADFLSALAKKLRKNTTALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (589)
Q Consensus 341 ~~~~~~~----~~~~~~~l~~L~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~ 412 (589)
+ ..+.. ..|++.+|++|.+.+......|..+. +.+.+.. .......++++..+++.|++.++++++++.
T Consensus 312 ~-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~ii~~ 388 (557)
T PRK08199 312 G-RVYRPDLAIVADPAAFAAALAALEPPASPAWAEWTAAAHADYLAWS--APLPGPGAVQLGEVMAWLRERLPADAIITN 388 (557)
T ss_pred C-CccCCCeEEecCHHHHHHHHHhcccccchhHHHHHHHHHHHHHhhc--cccCCCCCcCHHHHHHHHHHhCCCCeEEEE
Confidence 6 33322 24899999999876543222222221 1111110 011123469999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 007800 413 ETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (589)
Q Consensus 413 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~ 491 (589)
|+|++..|. .++...++..++. .++|+|||++|+|+|++++.|+++||+|+|||||+|+++||+|++++++|+++||+
T Consensus 389 d~g~~~~~~~~~~~~~~~~~~~~-~~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~~~l~i~~vv~ 467 (557)
T PRK08199 389 GAGNYATWLHRFFRFRRYRTQLA-PTSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYGLPIIVIVV 467 (557)
T ss_pred CChHHHHHHHHhcCcCCCCeEEC-CCCccccchHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEE
Confidence 999877654 3344444444554 45799999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhh----hhcCCCC--CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007800 492 NNGGYTIEV----EIHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 565 (589)
Q Consensus 492 nN~~~~~~~----~~~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~ 565 (589)
||++|++.+ ..+.+.+ +++.++||.++|++||+ ++++|+++++|+++|+++++ .+||.||||+++++
T Consensus 468 nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~li~v~~~~~ 540 (557)
T PRK08199 468 NNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGG-----HGETVERTEDFAPAFERALA--SGKPALIEIRIDPE 540 (557)
T ss_pred eCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCHH
Confidence 999999832 1222322 34567899999999999 99999999999999999986 88999999999987
Q ss_pred CChH
Q 007800 566 DTSK 569 (589)
Q Consensus 566 ~~~~ 569 (589)
+.++
T Consensus 541 ~~~~ 544 (557)
T PRK08199 541 AITP 544 (557)
T ss_pred HcCC
Confidence 6543
No 37
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=2.3e-89 Score=758.58 Aligned_cols=523 Identities=20% Similarity=0.277 Sum_probs=431.6
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++++|++.|+++||+||||+||+++.+|++++.+ ++|++|.|+||++|+|||+||+|++|+ +||++|+|||++|+
T Consensus 5 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 83 (588)
T PRK07525 5 KMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPP-AGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNF 83 (588)
T ss_pred cccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhc-cCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 4799999999999999999999999999999999964 589999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCC
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (589)
++|+++||.+++|||+|+|+.+....+.+ .+ |..||..+++++|||+.++++++++++.|++|++.|++++|
T Consensus 84 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~~G 155 (588)
T PRK07525 84 VTAVATAYWAHTPVVLVTPQAGTKTIGQG-----GF---QEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRESG 155 (588)
T ss_pred HHHHHHHhhcCCCEEEEeCCCCcccCCCC-----CC---cccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999887654443 12 23478999999999999999999999999999999999899
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||+||.|++..+.+. ..+.+... .. ..+++..+++++++|.+|+||+|++|.|++++++.++|.+|||++|+
T Consensus 156 PV~i~iP~Dv~~~~~~~--~~~~~~~~--~~--~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~ 229 (588)
T PRK07525 156 PAQINIPRDYFYGVIDV--EIPQPVRL--ER--GAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDA 229 (588)
T ss_pred CEEEEcChhHhhhhccc--ccCccccC--CC--CCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCC
Confidence 99999999998643221 11111111 11 12245689999999999999999999999999999999999999999
Q ss_pred ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCccccc---ccccCCCCceEEEcCCceeec
Q 007800 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG---YSLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~---~~~~~~~~~~i~id~d~~~~~ 341 (589)
||+||+++||.||++||+++|.+ |..++...++++++||+||+||+++++..+.. +..+.++.++||||.|+..++
T Consensus 230 pv~tT~~gkg~~p~~hpl~~G~~-g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~ 308 (588)
T PRK07525 230 PVACGYLHNDAFPGSHPLWVGPL-GYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIG 308 (588)
T ss_pred CeEEcccccccCCCCCccccccC-cccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhC
Confidence 99999999999999999999986 77788889999999999999999998765532 223445678999999999886
Q ss_pred CCCcccc----ccHHHHHHHHHHHhhcC------c--------hhhhhhhh----hcCCCC------CCC-CCCCCCCcC
Q 007800 342 NGPSLGW----VFMADFLSALAKKLRKN------T--------TALENYRR----IYVPPG------IPV-KRAQNEPLR 392 (589)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~------~--------~~~~~~~~----~~~~~~------~~~-~~~~~~~i~ 392 (589)
.++..+ .|++.+|++|.+.+++. . ..+..|.+ .+.... ... ......+++
T Consensus 309 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 387 (588)
T PRK07525 309 -LTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMH 387 (588)
T ss_pred -CCCCCCceEecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCcC
Confidence 333322 48899999998888542 0 01112211 110000 000 001224799
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcc
Q 007800 393 VNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQV 471 (589)
Q Consensus 393 ~~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~ 471 (589)
+.++++.|++.++++.+++.|+|++..|. .++..+++.+++.+.++|+|||++|+|||++++.|+++||+++|||+|+|
T Consensus 388 ~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~ 467 (588)
T PRK07525 388 PRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGI 467 (588)
T ss_pred HHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhc
Confidence 99999999999999999999999987665 44566667779999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcCCCC--CCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHH
Q 007800 472 TAQEISTMIRCGQRSIIFLINNGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAM 544 (589)
Q Consensus 472 ~~~el~ta~~~~l~v~ivv~nN~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al 544 (589)
+++||+|++++++|+++||+||++|++.+. .++..+ .++ +++||.++|++||+ ++++|++.+||+++|
T Consensus 468 ~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al 542 (588)
T PRK07525 468 SMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGA-----EGVVVDTQEELGPAL 542 (588)
T ss_pred cHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHH
Confidence 999999999999999999999999998321 122222 234 45899999999999 999999999999999
Q ss_pred HHhhhc-CCCCeEEEEEEcCCCCChHH
Q 007800 545 KTATGE-QKDSLCFIEVFVHKDDTSKE 570 (589)
Q Consensus 545 ~~a~~~-~~~gp~viev~~~~~~~~~~ 570 (589)
+++++. +.++|+||||.++++..++.
T Consensus 543 ~~a~~~~~~~~p~lIev~~~~~~~~~~ 569 (588)
T PRK07525 543 KRAIDAQNEGKTTVIEIMCNQELGEPF 569 (588)
T ss_pred HHHHhcCCCCCcEEEEEEeccccCCch
Confidence 999961 13699999999997665433
No 38
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-89 Score=757.36 Aligned_cols=515 Identities=19% Similarity=0.229 Sum_probs=425.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
++++++|++.|+++||+||||+||+++.+|+++|.++++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 3 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~ 82 (574)
T PRK09124 3 QTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLI 82 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHH
Confidence 7999999999999999999999999999999999765689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCc
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gP 185 (589)
+|+++||.+++|||+|+|+++....+++ .+ |..+|.++|+++|||+.++.+++++++.|++|++.|.+++||
T Consensus 83 ~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~gP 154 (574)
T PRK09124 83 NGLFDCHRNHVPVLAIAAHIPSSEIGSG-----YF---QETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILNRGV 154 (574)
T ss_pred HHHHHHhhcCCCEEEEecCCccccCCCC-----Cc---cccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998766554 22 235788999999999999999999999999999999988899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 186 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
|||+||.|++..+.+.. .......... ....+.+..+++++++|.+||||+|++|+|+. ++.+++.+|+|++++|
T Consensus 155 V~l~iP~Dv~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lae~l~~P 229 (574)
T PRK09124 155 AVVVLPGDVALKPAPER-ATPHWYHAPQ--PVVTPAEEELRKLAALLNGSSNITLLCGSGCA--GAHDELVALAETLKAP 229 (574)
T ss_pred EEEEeChhhhhCccccc-cccccccCCC--CCCCCCHHHHHHHHHHHHcCCCCEEEECcChH--hHHHHHHHHHHHhCCc
Confidence 99999999977432211 0000000000 10112356789999999999999999999984 5789999999999999
Q ss_pred eEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCc
Q 007800 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (589)
Q Consensus 266 v~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~ 345 (589)
|++|++|||.||++||+++|.+ |..+....++++++||+||+||++++... | +.+..++||||.|+.+++ +.+
T Consensus 230 V~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~~~~~~---~--~~~~~~ii~id~d~~~~~-~~~ 302 (574)
T PRK09124 230 IVHALRGKEHVEYDNPYDVGMT-GLIGFSSGYHAMMNCDTLLMLGTDFPYRQ---F--YPTDAKIIQIDINPGSLG-RRS 302 (574)
T ss_pred eEEcccccccCCCCCcccccCC-ccCCCHHHHHHHHhCCEEEEECCCCCccc---c--cCCCCcEEEeeCCHHHhC-CCC
Confidence 9999999999999999999995 78888888899999999999999875321 1 234568999999999887 333
Q ss_pred ccc----ccHHHHHHHHHHHhhcCc--hhhhhhhh---hcCCC--CCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 007800 346 LGW----VFMADFLSALAKKLRKNT--TALENYRR---IYVPP--GIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414 (589)
Q Consensus 346 ~~~----~~~~~~l~~L~~~l~~~~--~~~~~~~~---~~~~~--~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~ 414 (589)
..+ .|++.+|++|.+.++... .+.+.+.+ ..... ..........++++..+++.|++.++++++++.|+
T Consensus 303 ~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~ 382 (574)
T PRK09124 303 PVDLGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAADDAIFTCDV 382 (574)
T ss_pred CCCeEEEccHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCCCcEEEEcC
Confidence 332 479999999988775422 12222211 00000 00001112346999999999999999999999999
Q ss_pred Ccccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeC
Q 007800 415 GDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493 (589)
Q Consensus 415 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN 493 (589)
|++..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+++||+|+|||||+|+++||+|+++|++|+++||+||
T Consensus 383 g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN 462 (574)
T PRK09124 383 GTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVFNN 462 (574)
T ss_pred CHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCCCeEEEEEeC
Confidence 9987664 445566667799999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchhhhhh---hcC--CCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 494 GGYTIEVE---IHD--GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 494 ~~~~~~~~---~~~--~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
++|++.+. ... ..++++.++||.++|++||+ ++++|++++||+++|+++++ .++|.||||.+++++.+
T Consensus 463 ~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~i~~~~~~ 535 (574)
T PRK09124 463 SVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGI-----TGIRVEKASELDGALQRAFA--HDGPALVDVVTAKQELA 535 (574)
T ss_pred CccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecCcccC
Confidence 99998321 111 12345678999999999999 99999999999999999996 88999999999987754
No 39
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=3.8e-89 Score=754.31 Aligned_cols=519 Identities=17% Similarity=0.236 Sum_probs=424.5
Q ss_pred HHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCC-CCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHH
Q 007800 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-ELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLN 106 (589)
Q Consensus 29 ~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~-~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~ 106 (589)
++|+|++.|+++||+||||+||+++.+|+++|.+++ +|++|.||||.+|+|||+||+|+||+ +||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 479999999999999999999999999999997643 59999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcE
Q 007800 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (589)
Q Consensus 107 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (589)
|+++||.+++|||+|+|+.+....+.+ .++ ..||..+++++|||+.++.+++++++.|++|++.|.+++|||
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~q---~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV 152 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMD-----TFQ---EMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVA 152 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCC-----Ccc---eechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 999999999999999999988755443 222 347889999999999999999999999999999999988999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCce
Q 007800 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (589)
Q Consensus 187 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv 266 (589)
||+||.|++..+.+.......+....+.. ...++++.+++++++|++||||+|++|.|++ ++.++|.+|||++++||
T Consensus 153 ~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~PV 229 (575)
T TIGR02720 153 VVTIPVDFGWQEIPDNDYYASSVSYQTPL-LPAPDVEAVTRAVQTLKAAERPVIYYGIGAR--KAGEELEALSEKLKIPL 229 (575)
T ss_pred EEEECcchhhccccccccccccccccCCC-CCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHhCCCE
Confidence 99999999764322111000011000000 1123567899999999999999999999997 47899999999999999
Q ss_pred EEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCcc
Q 007800 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (589)
Q Consensus 267 ~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~ 346 (589)
+||++|||.||++||+++|++ |..+++.+++++++||+||++|++++.... .+ .+.+..++||||.|+.+++ +++.
T Consensus 230 ~tt~~gkg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~-~~-~~~~~~~~I~id~d~~~~~-~~~~ 305 (575)
T TIGR02720 230 ISTGLAKGIIEDRYPAYLGSA-YRVAQKPANEALFQADLVLFVGNNYPFAEV-SK-AFKNTKYFIQIDIDPAKLG-KRHH 305 (575)
T ss_pred EEcccccccCCCCCcccccCC-cCCCcHHHHHHHHhCCEEEEeCCCCCcccc-cc-ccCCCceEEEEeCCHHHhC-CCCC
Confidence 999999999999999999996 777888899999999999999999864322 11 1223344699999999887 4332
Q ss_pred c----cccHHHHHHHHHHHhhcCch-hh-hhhh---hhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcc
Q 007800 347 G----WVFMADFLSALAKKLRKNTT-AL-ENYR---RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (589)
Q Consensus 347 ~----~~~~~~~l~~L~~~l~~~~~-~~-~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~ 417 (589)
. ..|++.+|++|.+.++.... .| ..+. +.............+.++++..+++.|++.++++++++.|+|++
T Consensus 306 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~D~g~~ 385 (575)
T TIGR02720 306 TDIAVLADAKKALAAILAQVEPRESTPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDI 385 (575)
T ss_pred CCeEEecCHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhCCCCcEEEeCCcHH
Confidence 2 24889999999988764221 11 1111 00000000011122347999999999999999999999999998
Q ss_pred cccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCch
Q 007800 418 WFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496 (589)
Q Consensus 418 ~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~ 496 (589)
..|. .++..+++.+|+.+.++|+|||++|+|+|++++.|+++||+++|||||+|+++||+|+++|++|+++||+||++|
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~VV~NN~~y 465 (575)
T TIGR02720 386 NINSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTY 465 (575)
T ss_pred HHHHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 7765 445666667799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh---hcCCCC--CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhh--hcCCCCeEEEEEEcCCCCChH
Q 007800 497 TIEVE---IHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT--GEQKDSLCFIEVFVHKDDTSK 569 (589)
Q Consensus 497 ~~~~~---~~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~--~~~~~gp~viev~~~~~~~~~ 569 (589)
++.+. .....+ .+++++||.++|++||+ ++++|++.+||+++|++++ + .++|.||||.+++++.++
T Consensus 466 g~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~-----~~~~v~~~~el~~al~~a~~~~--~~~p~liev~i~~~~~~~ 538 (575)
T TIGR02720 466 GFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGA-----VGFRVNKIEQLPAVFEQAKAIK--QGKPVLIDAKITGDRPLP 538 (575)
T ss_pred HHHHHHHHHhCCCcccccCCCCCHHHHHHHCCC-----EEEEeCCHHHHHHHHHHHHhhC--CCCcEEEEEEeCCCCCCC
Confidence 98321 112222 34578999999999999 9999999999999999998 5 789999999999987555
No 40
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-89 Score=755.32 Aligned_cols=512 Identities=19% Similarity=0.251 Sum_probs=424.6
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
++++++|++.|+++||+||||+||+++.+|+|+|.++.+|++|.||||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 3 ~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~ 82 (578)
T PRK06546 3 KTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLI 82 (578)
T ss_pred ccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHH
Confidence 7999999999999999999999999999999999875589999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCc
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gP 185 (589)
+|+++||.+++|||+|+|+.+....+++ .+| ..+|.++++++|||++++++++++++.|++|++.|.++|||
T Consensus 83 ~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~Q---e~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GP 154 (578)
T PRK06546 83 NGLYDAHRSGAPVLAIASHIPSAQIGSG-----FFQ---ETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVAGGGV 154 (578)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCC-----Ccc---ccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999988765554 222 34678999999999999999999999999999999988999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 186 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
|||+||.|++..+.+.. ..+.. ..+......+++..+++++++|++||||+|++|+|++ ++.+++.+|+|++++|
T Consensus 155 V~l~lP~Dv~~~~~~~~-~~~~~--~~~~~~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~--~a~~~l~~lae~~g~P 229 (578)
T PRK06546 155 SVVTLPGDIADEPAPEG-FAPSV--ISPRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVR--GAHAEVLALAEKIKAP 229 (578)
T ss_pred EEEEcChhhhhcccccc-ccccc--cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchH--HHHHHHHHHHHHhCcc
Confidence 99999999976422210 00000 1111111123466899999999999999999999997 5789999999999999
Q ss_pred eEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCc
Q 007800 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (589)
Q Consensus 266 v~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~ 345 (589)
|++|++|||.||++||+++|+. |..+++.+++++++||+||+||++++. ..+.++.++||||.|+.+++ +++
T Consensus 230 v~~t~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~lG~~~~~------~~~~~~~~~I~vd~d~~~~~-~~~ 301 (578)
T PRK06546 230 VGHSLRGKEWIQYDNPFDVGMS-GLLGYGAAHEAMHEADLLILLGTDFPY------DQFLPDVRTAQVDIDPEHLG-RRT 301 (578)
T ss_pred eEECcccccCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEEcCCCCh------hhcCCCCcEEEEeCCHHHhC-CCC
Confidence 9999999999999999999985 888889999999999999999998753 22334568999999999987 333
Q ss_pred cc----cccHHHHHHHHHHHhhcCc-hhh-hhhh---hhcCCC---CCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEec
Q 007800 346 LG----WVFMADFLSALAKKLRKNT-TAL-ENYR---RIYVPP---GIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAE 413 (589)
Q Consensus 346 ~~----~~~~~~~l~~L~~~l~~~~-~~~-~~~~---~~~~~~---~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d 413 (589)
.. ..|++.+|++|.+.++.+. ..| ..++ +....+ ..........++++..+++.|++.++++++++.|
T Consensus 302 ~~~~~i~~D~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d 381 (578)
T PRK06546 302 RVDLAVHGDVAETIRALLPLVKEKTDRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELAADDAVFTVD 381 (578)
T ss_pred CCCeEEEcCHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccCCcEEEEC
Confidence 22 3488999999999886432 111 1111 110000 0000112234799999999999999999999999
Q ss_pred CCcccccccc-ccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEe
Q 007800 414 TGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLIN 492 (589)
Q Consensus 414 ~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~n 492 (589)
.|++..|... +...++.+++.+..+|+|||++|+|+|+++++|+++||+++|||||+|+++||+|+++|++|+++||+|
T Consensus 382 ~G~~~~~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~~vV~N 461 (578)
T PRK06546 382 TGMCNVWAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVVVFN 461 (578)
T ss_pred CcHHHHHHHHhcCCCCCceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCCCeEEEEEE
Confidence 9998766543 444445668888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhh--hhcCC---CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 493 NGGYTIEV--EIHDG---PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 493 N~~~~~~~--~~~~~---~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
|++|++.+ +...+ ...+++++||.++|++||+ ++++|++++||+++|+++++ .+||+||||.+++..
T Consensus 462 N~~~g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~lIev~~~~~~ 533 (578)
T PRK06546 462 NSTLGMVKLEMLVDGLPDFGTDHPPVDYAAIAAALGI-----HAVRVEDPKDVRGALREAFA--HPGPALVDVVTDPNA 533 (578)
T ss_pred CCccccHHHHHHhcCCCcccccCCCCCHHHHHHHCCC-----eeEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCCc
Confidence 99999832 21111 2234578999999999999 89999999999999999997 899999999999765
No 41
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-89 Score=750.95 Aligned_cols=515 Identities=20% Similarity=0.237 Sum_probs=418.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhcc--Cc-eEEEEeCCcch
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR--GV-GACVVTFTVGG 101 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~t--g~-~v~~~t~GpG~ 101 (589)
+.++++|+|++.|+++||++|||+|| .+|+|+|.+ ++|++|.||||++|+|||+||+|+| |+ +||++|+|||+
T Consensus 18 ~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG~ 93 (565)
T PRK06154 18 KTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAA-AGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPGA 93 (565)
T ss_pred CcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHh-cCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCccH
Confidence 35799999999999999999999995 489999975 6899999999999999999999999 37 99999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHh
Q 007800 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (589)
Q Consensus 102 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 181 (589)
+|+++||++||.+++|||+|+|+.+....+.+ ...++.++|+++|||+.++.+++++++.|++|++.|.+
T Consensus 94 ~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~----------~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s 163 (565)
T PRK06154 94 ENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA----------PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRN 163 (565)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCcccccCC----------CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887643322 12356799999999999999999999999999999999
Q ss_pred c-CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHH
Q 007800 182 E-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (589)
Q Consensus 182 ~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae 260 (589)
+ +|||||+||.|++..+ .... +..... +......+.+..+++++++|.+||||+|++|.|++++++.+++.+|||
T Consensus 164 ~~~GPV~l~iP~Dv~~~~--~~~~-~~~~~~-~~~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~lae 239 (565)
T PRK06154 164 GRPGPVVLELPVDVLAEE--LDEL-PLDHRP-SRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAE 239 (565)
T ss_pred CCCceEEEecchHHhhhh--cccc-cccccC-CCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHH
Confidence 6 7999999999998742 2110 110000 001111234568999999999999999999999999999999999999
Q ss_pred HhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceee
Q 007800 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (589)
Q Consensus 261 ~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 340 (589)
++++||+||++|||.||++||+++|.. |..+.+.+++++++||+||+||+++++... .+. +.+..++||||.|+.++
T Consensus 240 ~l~~PV~tt~~gkg~~~~~hpl~~G~~-g~~~~~~~~~~~~~aDlvL~lG~~l~~~~~-~~~-~~~~~~vI~id~d~~~~ 316 (565)
T PRK06154 240 LLEIPVMTTLNGKSAFPEDHPLALGSG-GRARPATVAHFLREADVLFGIGCSLTRSYY-GLP-MPEGKTIIHSTLDDADL 316 (565)
T ss_pred HhCCCEEECCCcccCCCCCCccccCCC-CCCCcHHHHHHHHhCCEEEEECCCCccccc-Ccc-CCCCCeEEEEECCHHHh
Confidence 999999999999999999999999985 666777889999999999999999987543 332 44567899999999988
Q ss_pred cCCCccc----cccHHHHHHHHHHHhhcCch-------hhh-hh---hhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 007800 341 GNGPSLG----WVFMADFLSALAKKLRKNTT-------ALE-NY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS 405 (589)
Q Consensus 341 ~~~~~~~----~~~~~~~l~~L~~~l~~~~~-------~~~-~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~ 405 (589)
+ +++.. ..|++.+|++|.+.++.+.. .|. .. ++.............+.++++..++++|++.++
T Consensus 317 ~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~ 395 (565)
T PRK06154 317 N-KDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAVD 395 (565)
T ss_pred c-cccCCCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhcC
Confidence 7 33322 24889999999988764311 111 11 111100100001123447999999999999997
Q ss_pred -CCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhC
Q 007800 406 -GDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCG 483 (589)
Q Consensus 406 -~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~ 483 (589)
++.+++.|+|++..|. .++...++.+|+.+.++|+|||++|+|||+++|.|+++||+++|||||+|+++||+|++|||
T Consensus 396 ~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~ 475 (565)
T PRK06154 396 IKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVRER 475 (565)
T ss_pred CCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHHhC
Confidence 4788888999987764 45555666679998899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCchhhhhhh---cCCCC-CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh-cCCCCeEEE
Q 007800 484 QRSIIFLINNGGYTIEVEI---HDGPY-NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-EQKDSLCFI 558 (589)
Q Consensus 484 l~v~ivv~nN~~~~~~~~~---~~~~~-~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~-~~~~gp~vi 558 (589)
+|+++||+||++|++.+.. +...+ ....++||.++|++||+ ++++|++.+||+++|+++++ ...++|.||
T Consensus 476 lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~-----~g~~V~~~~el~~al~~a~~~~~~~~p~lI 550 (565)
T PRK06154 476 IPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALGG-----YGERVEDPEMLVPALLRALRKVKEGTPALL 550 (565)
T ss_pred CCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHhhccCCCeEEE
Confidence 9999999999999972211 11222 11135799999999999 99999999999999999984 125789999
Q ss_pred EEEcCCCC
Q 007800 559 EVFVHKDD 566 (589)
Q Consensus 559 ev~~~~~~ 566 (589)
||.+++++
T Consensus 551 ev~v~~~~ 558 (565)
T PRK06154 551 EVITSEET 558 (565)
T ss_pred EEEeChHH
Confidence 99998754
No 42
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=3.4e-88 Score=681.99 Aligned_cols=560 Identities=61% Similarity=0.980 Sum_probs=512.6
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHH
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~ 104 (589)
+.++++++|+++|.+.||++|||+||+.+++|+|-|...++++||.|.||.+|+||||||||..|.++|++|.|+|.+.+
T Consensus 2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLSA 81 (561)
T KOG1184|consen 2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKGIGACVTTFGVGELSA 81 (561)
T ss_pred CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcCceEEEEEeccchhhh
Confidence 35889999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCC
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (589)
++|++.||.+++|||+|.|.+++...++++.+||++|.+||..+.+|++.+++++..+.+.+++++.|++|+++|.....
T Consensus 82 lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~r 161 (561)
T KOG1184|consen 82 LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKESK 161 (561)
T ss_pred hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||.||.|+...+.++....+.+....++..+....++.++.+++++.++++|+|++|.-.++.+..++.++|+++++.
T Consensus 162 PVYi~iP~n~~~~~~~~~~l~~~p~~~~~~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~~~~~ 241 (561)
T KOG1184|consen 162 PVYIGVPANLADLPVPAFGLLPVPLDLSPKPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELADATGF 241 (561)
T ss_pred CeEEEeecccccCcCCcccCCCCCcccCCCCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHHHhhCC
Confidence 99999999998765555433344455555555555566788999999999999999999999999999999999999999
Q ss_pred ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCC
Q 007800 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (589)
|++.|+++||.++|+||.|.|+|+|..+.+...+.++.||+||.+|..++++.+.+|+...++.++|+++.|...+. ..
T Consensus 242 p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i~-~~ 320 (561)
T KOG1184|consen 242 PVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKIR-NA 320 (561)
T ss_pred CeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEeecCccceEEEecceEEec-cc
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999999885 56
Q ss_pred ccccccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccc
Q 007800 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (589)
Q Consensus 345 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~ 424 (589)
.++.++++.+|+.|+..++.....+.++.+.+.++.......+..+++...+++.+++.+.+++++++++|.+++....+
T Consensus 321 ~f~~v~mk~~l~~Lak~I~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S~F~~~~~ 400 (561)
T KOG1184|consen 321 TFGGVLMKDFLQELAKRIKKNKTSYENYVRIPVPEPKPLACPPNAPLRQEWMWNHIQKFLSSGDVVIAETGDSWFGINQT 400 (561)
T ss_pred cccceeHHHHHHHHHHhhcccccchhcccccCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCceEEEecccceecceee
Confidence 78889999999999999987766554444444333333344556679999999999999999999999999999998889
Q ss_pred cccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcC
Q 007800 425 RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHD 504 (589)
Q Consensus 425 ~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~ 504 (589)
.+|.+..+.+...||++||++|+++|+++|.++++||+|+|||+|+++.||+.|+.|+++|..++++||+||.+++.+|+
T Consensus 401 ~fP~g~~~~~q~~wgsIG~svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~if~~NN~GYTIE~~IH~ 480 (561)
T KOG1184|consen 401 KFPKGCGYESQMQWGSIGWSVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIRWGLKPIIFLINNGGYTIEVEIHD 480 (561)
T ss_pred ccccccceEEEEEEeeccccchhhhhhhhccCCceEEEEecCccceeeHHHHHHHHhcCCCcEEEEEeCCceEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHHhhhhcCC
Q 007800 505 GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 584 (589)
Q Consensus 505 ~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~~~~~~~~~~~~ 584 (589)
+.|+++.+|||..+.++||..+++++..++.+-+++.++++++...+.+++.+|||+++..|.|+.|.+|.+..+..+.+
T Consensus 481 ~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~~~~~i~liEv~l~~~D~p~~L~~~~~~~a~~n~k 560 (561)
T KOG1184|consen 481 GPYNDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFEKNDKIRLIEVILPVDDAPKELLEWGSLVAAANSK 560 (561)
T ss_pred CCccccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhcccCceEEEEEecCcccChHHHHHHHHHhhhcccC
Confidence 88999999999999999999777788999999999999999998546778999999999999999999999998877654
Q ss_pred C
Q 007800 585 P 585 (589)
Q Consensus 585 ~ 585 (589)
|
T Consensus 561 ~ 561 (561)
T KOG1184|consen 561 P 561 (561)
T ss_pred C
Confidence 3
No 43
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-88 Score=744.45 Aligned_cols=510 Identities=22% Similarity=0.289 Sum_probs=419.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
.+++|+|++.|+++||++|||+||+++.+++++|.+ .+|++|.|+||.+|+|||+||+|+||+ +||++|+|||++|++
T Consensus 2 ~~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~-~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~ 80 (535)
T PRK07524 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAG-SGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIA 80 (535)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 589999999999999999999999999999999975 489999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCcc-ceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNR-ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
+||++||.+++|||+|+|+.+....+++. ++| +..||.++++++|||+.++.+++++++.|++|++.|.++ +
T Consensus 81 ~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~------~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (535)
T PRK07524 81 TAMGQAYADSIPMLVISSVNRRASLGKGRGKLH------ELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARP 154 (535)
T ss_pred HHHHHHHhcCCCEEEEeCCCChhhcCCCCcccc------ccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999887655432 222 345789999999999999999999999999999999986 7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+ .......+. ... ....+++..+++++++|.+||||+|++|.|++ ++.++|.+|||+++
T Consensus 155 GPV~l~iP~Dv~~~~--~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~ 227 (535)
T PRK07524 155 RPVHIEIPLDVLAAP--ADHLLPAPP-TRP--ARPGPAPAALAQAAERLAAARRPLILAGGGAL--AAAAALRALAERLD 227 (535)
T ss_pred CcEEEEeCHhHHhcc--cccccCccc-ccC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCChH--HHHHHHHHHHHHHC
Confidence 999999999998743 211111100 100 01123456799999999999999999999997 47899999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCccccc-c-cccCCCCceEEEcCCceeec
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG-Y-SLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~-~-~~~~~~~~~i~id~d~~~~~ 341 (589)
+||+||+++||.||++||+++|.. | ++..+++++++||+||+||+++++..+.. | ..+.++.++||||.|+.+++
T Consensus 228 ~pV~tt~~~kg~~p~~hp~~~G~~-~--~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 304 (535)
T PRK07524 228 APVALTINAKGLLPAGHPLLLGAS-Q--SLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLA 304 (535)
T ss_pred CCEEEcccccccCCCCChhhccCC-C--CCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhC
Confidence 999999999999999999999974 3 66789999999999999999987665421 1 12344568999999998886
Q ss_pred CCCccc----cccHHHHHHHHHHHhhcCch--hh-hh-hhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEec
Q 007800 342 NGPSLG----WVFMADFLSALAKKLRKNTT--AL-EN-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAE 413 (589)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~~~~--~~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d 413 (589)
+.+.. ..|++.+|++|.+.++.+.. .| .+ +.+.+.... . . .....+++..+++.|++.++ +.+++.|
T Consensus 305 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~l~~~l~-~~~i~~d 379 (535)
T PRK07524 305 -RNYPPALALVGDARAALEALLARLPGQAAAADWGAARVAALRQALR-A-E-WDPLTAAQVALLDTILAALP-DAIFVGD 379 (535)
T ss_pred -CCcCCCceEecCHHHHHHHHHHhccccCCchhhHHHHHHHHHHhch-h-h-ccccccCHHHHHHHHHHhCC-CCEEEeC
Confidence 33322 24899999999998865321 11 11 111110000 0 0 11224667889999999998 6888999
Q ss_pred CCcccccc-ccccccCCCeeEe-ccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 007800 414 TGDSWFNC-QKLRLPENCGYEF-QMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (589)
Q Consensus 414 ~G~~~~~~-~~~~~~~~~~~~~-~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~ 491 (589)
.|++.+|. .++..+++.+|+. +.++|+|||++|+|+|+++|+|+++||+++|||||+|+++||+|+++|++|+++||+
T Consensus 380 ~g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~vV~ 459 (535)
T PRK07524 380 STQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLW 459 (535)
T ss_pred CcHHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEE
Confidence 99876654 4556666777887 899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhhh-h--cCC--CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007800 492 NNGGYTIEVE-I--HDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 565 (589)
Q Consensus 492 nN~~~~~~~~-~--~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~ 565 (589)
||++|++.+. + ... .+.+++++||.++|++||+ ++++|+++++|+++|+++++ .+||.||||++++-
T Consensus 460 NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~liev~~~~~ 531 (535)
T PRK07524 460 NNDGYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGC-----AAERVADLEQLQAALRAAFA--RPGPTLIEVDQACW 531 (535)
T ss_pred ECCchHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCC-----cEEEeCCHHHHHHHHHHHHh--CCCCEEEEEECCcc
Confidence 9999997321 1 111 2345577999999999999 99999999999999999997 89999999999874
No 44
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=2.4e-88 Score=746.64 Aligned_cols=521 Identities=20% Similarity=0.232 Sum_probs=418.8
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++|+|++.|+++||+||||+||+++.++++++.+ ++|++|.||||++|+|||+||+|++|+ +||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 80 (554)
T TIGR03254 2 LTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQA-KGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNG 80 (554)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhH
Confidence 4689999999999999999999999999999999964 689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++||.+++|||+|+|+.+....+.+ .+..+..||..+++++|||+.++.+++++++.|++|++.|.++ |
T Consensus 81 ~~gia~A~~~~~Pvl~I~G~~~~~~~~~~------~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~p 154 (554)
T TIGR03254 81 LTALANATTNCFPMIMISGSSERHIVDLQ------QGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRP 154 (554)
T ss_pred HHHHHHHHhcCCCEEEEEccCCccccccC------CCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999886632111 1112345889999999999999999999999999999999986 7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+.+...................+.+..+++++++|.+||||+|++|.|++++++.+++.+|+|+++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~ 234 (554)
T TIGR03254 155 GGVYLDLPAAVLGQTMEAEKAKKTLVKVVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTG 234 (554)
T ss_pred CcEEEEcCHHHhhccccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHHC
Confidence 99999999999874322110000000000000111234678999999999999999999999999899999999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCccccccc-ccCCCCceEEEcCCceeecC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~ 342 (589)
+||++|++|||.||++||+++|. ..++++++||+||++|+++++..+.+|. .+.+..++||||.|+.+++
T Consensus 235 ~pv~tt~~gkg~~p~~hp~~~g~--------~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~- 305 (554)
T TIGR03254 235 IPFLPMSMAKGLLPDTHPQSAAA--------ARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMD- 305 (554)
T ss_pred CCEEEcCCcceeCCCCCchhhhH--------HHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhC-
Confidence 99999999999999999999875 3567899999999999999988776553 3445678999999998876
Q ss_pred CCccc----cccHHHHHHHHHHHhhcC----chhh-hh---hhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCC--CC
Q 007800 343 GPSLG----WVFMADFLSALAKKLRKN----TTAL-EN---YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG--DT 408 (589)
Q Consensus 343 ~~~~~----~~~~~~~l~~L~~~l~~~----~~~~-~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~--~~ 408 (589)
.++.. ..|++.+|++|.+.++.. ...| .. +++.+.............++++..+++.|++.+++ +.
T Consensus 306 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~ 385 (554)
T TIGR03254 306 SNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDI 385 (554)
T ss_pred CCcCCceEEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCCCE
Confidence 32221 238999999999988532 1112 11 11111100000001123479999999999999974 67
Q ss_pred EEEecCCcccccccc-ccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeE
Q 007800 409 AVIAETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487 (589)
Q Consensus 409 iiv~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ 487 (589)
+++.|.|++..|..+ +...++.+++.+.++|+|||++|+|||++++ ++++||+++|||||+|+++||+|+++|++|++
T Consensus 386 ivv~d~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-~~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~ 464 (554)
T TIGR03254 386 YLVNEGANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-TGKPVVALEGDSAFGFSGMEVETICRYNLPVC 464 (554)
T ss_pred EEEeCCchHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-CCCcEEEEEcCchhcccHHHHHHHHHcCCCEE
Confidence 788888777655433 4444555688899999999999999999999 58999999999999999999999999999999
Q ss_pred EEEEeCCchhhh--hhhcC--CCCCCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007800 488 IFLINNGGYTIE--VEIHD--GPYNVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 562 (589)
Q Consensus 488 ivv~nN~~~~~~--~~~~~--~~~~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~ 562 (589)
+||+||++|... ...+. ..+.++ +++||.++|++||+ ++++|++.+||+++|+++++ .++|.||||.+
T Consensus 465 ~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIev~i 537 (554)
T TIGR03254 465 VVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGG-----VGYNVTTPDELKAALNEALA--SGKPTLINAVI 537 (554)
T ss_pred EEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEE
Confidence 999999998432 11212 123444 68999999999999 99999999999999999986 78999999999
Q ss_pred CCCCChHH
Q 007800 563 HKDDTSKE 570 (589)
Q Consensus 563 ~~~~~~~~ 570 (589)
++++.++.
T Consensus 538 d~~~~~~~ 545 (554)
T TIGR03254 538 DPSAGTES 545 (554)
T ss_pred CCCcCCcc
Confidence 98877653
No 45
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-88 Score=746.26 Aligned_cols=510 Identities=23% Similarity=0.295 Sum_probs=417.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++++|++.|+++||+||||+||+++.+|++++.++++|++|.|+||++|+|||+||+|++|+ +||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 47899999999999999999999999999999999765689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCcc-ceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNR-ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
++||++||.+++|||+|+|++++...+++. ++| +..||.++++++|||++++.+++++++.|++|++.|.++
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~------~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~ 155 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIH------EAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAP 155 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccc------cccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999998877555442 222 334789999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++..+.+.. ....+. .. ....+++..+++++++|.+||||+|++|.|++ ++.++|.+|+| +
T Consensus 156 ~GPV~l~iP~dv~~~~~~~~-~~~~~~--~~--~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~--~a~~~l~~lae-~ 227 (544)
T PRK07064 156 TGPVSVEIPIDIQAAEIELP-DDLAPV--HV--AVPEPDAAAVAELAERLAAARRPLLWLGGGAR--HAGAEVKRLVD-L 227 (544)
T ss_pred CCcEEEEeCHhHhhcccccc-cccccc--cC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCChH--hHHHHHHHHHH-c
Confidence 79999999999976432211 000011 00 11123456899999999999999999999997 46789999999 9
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
++||++|+++||.||++||+++|.+ | +++.+++++++||+||+||+++++..+..|.... ..++||||.|+..++
T Consensus 228 ~~pv~~t~~~kg~~~~~hp~~~G~~-~--~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~- 302 (544)
T PRK07064 228 GFGVVTSTQGRGVVPEDHPASLGAF-N--NSAAVEALYKTCDLLLVVGSRLRGNETLKYSLAL-PRPLIRVDADAAADG- 302 (544)
T ss_pred CCCEEEccCccccCCCCChhhcccC-C--CCHHHHHHHHhCCEEEEecCCCCcccccccccCC-CCceEEEeCCHHHhC-
Confidence 9999999999999999999999986 4 6788899999999999999999988776664333 358999999998876
Q ss_pred CCc----cccccHHHHHHHHHHHhhcCc---hhh-hhhhhhcCCCCCCCCCCCCCCcCH-HHHHHHHHhhCCCCCEEEec
Q 007800 343 GPS----LGWVFMADFLSALAKKLRKNT---TAL-ENYRRIYVPPGIPVKRAQNEPLRV-NVLFKHIQDMLSGDTAVIAE 413 (589)
Q Consensus 343 ~~~----~~~~~~~~~l~~L~~~l~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~L~~~l~~~~iiv~d 413 (589)
..+ ....|++.+|++|.+.++... ..| ..+.+.+..... . ...++.+ ..+++.|++.++++++++.|
T Consensus 303 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~l~~~l~~~~ii~~d 378 (544)
T PRK07064 303 RGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAREAAVA--D--LRKGLGPYAKLVDALRAALPRDGNWVRD 378 (544)
T ss_pred CcCCCCceEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhh--h--cccccCcHHHHHHHHHHhCCCCCEEEeC
Confidence 322 223589999999998876431 112 222211111100 0 0113444 46999999999999999999
Q ss_pred CCcc-ccc-cccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 007800 414 TGDS-WFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (589)
Q Consensus 414 ~G~~-~~~-~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~ 491 (589)
+|.+ ..| ..++..+.+..++.+.+ |+|||++|+|||+++|+|+++||+++|||||+|+++||+|+++|++|+++||+
T Consensus 379 ~~~~~~~~~~~~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 457 (544)
T PRK07064 379 VTISNSTWGNRLLPIFEPRANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLM 457 (544)
T ss_pred CccchHHHHHHhcCccCCCceeccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEEEE
Confidence 9853 443 34455555545666555 89999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhhhh----cCC--CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007800 492 NNGGYTIEVEI----HDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 565 (589)
Q Consensus 492 nN~~~~~~~~~----~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~ 565 (589)
||++|++.+.. ++. .++++.++||.++|++||+ ++++|++++||+++|+++++ .++|.||||.++..
T Consensus 458 NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIeV~~~~~ 530 (544)
T PRK07064 458 NDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGL-----PHWRVTSADDFEAVLREALA--KEGPVLVEVDMLSI 530 (544)
T ss_pred eCChhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHc--CCCCEEEEEEcccc
Confidence 99999983321 122 3456678999999999999 99999999999999999996 88999999999843
Q ss_pred C
Q 007800 566 D 566 (589)
Q Consensus 566 ~ 566 (589)
.
T Consensus 531 ~ 531 (544)
T PRK07064 531 G 531 (544)
T ss_pred c
Confidence 3
No 46
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.6e-87 Score=743.74 Aligned_cols=534 Identities=23% Similarity=0.280 Sum_probs=432.0
Q ss_pred CcCcccccCCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEE
Q 007800 15 SAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GAC 93 (589)
Q Consensus 15 ~~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~ 93 (589)
|+|....|.++.++++++|++.|+++||++|||+|+.. .+++++.+ ++|++|.||||++|+|||+||+|+||+ +||
T Consensus 2 ~~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vFG~~~~~--~~~~~~~~-~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~ 78 (578)
T PRK06112 2 SKPLSAPGFTLNGTVAHAIARALKRHGVEQIFGQSLPS--ALFLAAEA-IGIRQIAYRTENAGGAMADGYARVSGKVAVV 78 (578)
T ss_pred CcccCCCCCccCcCHHHHHHHHHHHCCCCEEeecccch--HhHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCEEE
Confidence 55666667667799999999999999999999998664 34566754 579999999999999999999999999 999
Q ss_pred EEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHH
Q 007800 94 VVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELID 173 (589)
Q Consensus 94 ~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~ 173 (589)
++|+|||++|+++||++||.+++|||+|+|+.+....+++ .+| ..||..+|+++|||+.++.+++++++.++
T Consensus 79 ~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~Q---~~d~~~l~~~vtk~~~~v~~~~~~~~~i~ 150 (578)
T PRK06112 79 TAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRN-----AFQ---ELDHIALFQSCTKWVRRVTVAERIDDYVD 150 (578)
T ss_pred EeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccCCCC-----Ccc---ccChhhhhccccceEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999998755544 222 35789999999999999999999999999
Q ss_pred HHHHHhHhc-CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCC-CChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhH
Q 007800 174 TAISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKV-SNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKA 251 (589)
Q Consensus 174 ~A~~~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~ 251 (589)
+|++.|.++ +|||||+||.|++..+.+... .+.+....+.. ....+++..+++++++|.+||||+|++|+|+.++++
T Consensus 151 ~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a 229 (578)
T PRK06112 151 QAFTAATSGRPGPVVLLLPADLLTAAAAAPA-APRSNSLGHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGA 229 (578)
T ss_pred HHHHHHhhCCCCcEEEEcCHhHhhCcccccc-CcccccccCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccch
Confidence 999999997 699999999999874321110 11100000000 011234567899999999999999999999999899
Q ss_pred HHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCC-C----CHHHHHHhhhcCEEEEeCCCcCCcccccccccCC
Q 007800 252 QKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAV-S----SSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK 326 (589)
Q Consensus 252 ~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~-~----~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~ 326 (589)
.+++.+|+|++|+||++|+++||.||++||+++|.+ |.. + .+.+++++++||+||+||+++++..+..|..+.+
T Consensus 230 ~~~l~~lae~lg~pV~~t~~~kg~~p~~hp~~~G~~-g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~ 308 (578)
T PRK06112 230 SAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVV-GSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSWSLYPE 308 (578)
T ss_pred HHHHHHHHHHhCCCEEEcccccccCCCCCccccccc-cccCCCccchHHHHHHHHhCCEEEEECCCCCccccccccccCC
Confidence 999999999999999999999999999999999986 443 2 2467889999999999999999888777765556
Q ss_pred CCceEEEcCCceeecCCCc---cccccHHHHHHHHHHHhhcCc--------hhh-hhhhhh---cCCCCCCCCCCCCCCc
Q 007800 327 KEKAIIVQPHRVTVGNGPS---LGWVFMADFLSALAKKLRKNT--------TAL-ENYRRI---YVPPGIPVKRAQNEPL 391 (589)
Q Consensus 327 ~~~~i~id~d~~~~~~~~~---~~~~~~~~~l~~L~~~l~~~~--------~~~-~~~~~~---~~~~~~~~~~~~~~~i 391 (589)
..++||||.|+.+++ ..+ ....|++.+|++|.+.+...+ ..| ..+.+. ..............++
T Consensus 309 ~~~~i~id~d~~~~~-~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 387 (578)
T PRK06112 309 QAQYIHIDVDGEEVG-RNYEALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPI 387 (578)
T ss_pred CCeEEEEECChHHhC-ccccceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCc
Confidence 678999999998876 222 122488999999988775321 111 111111 1000000011223469
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCccccccc-cccccCC-CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhh
Q 007800 392 RVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPEN-CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (589)
Q Consensus 392 ~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~-~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf 469 (589)
++..+++.|++.++++++++.|+|++..|.. ++....+ ..|+.+.++++||+++|+|+|+++++|+++||+++|||+|
T Consensus 388 ~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf 467 (578)
T PRK06112 388 RPERIMAELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGF 467 (578)
T ss_pred CHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHH
Confidence 9999999999999999999999998866653 3443333 3588889999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhhhhhh----cCC--CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHH
Q 007800 470 QVTAQEISTMIRCGQRSIIFLINNGGYTIEVEI----HDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEA 543 (589)
Q Consensus 470 ~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~----~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~a 543 (589)
+|+++||+|++++++|+++||+||++|++.+.. ++. .+.++.++||.++|++||+ ++++|++.+||+++
T Consensus 468 ~~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~a 542 (578)
T PRK06112 468 AHVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGC-----DGVRVEDPAELAQA 542 (578)
T ss_pred HhHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHH
Confidence 999999999999999999999999999983211 111 2234567999999999999 99999999999999
Q ss_pred HHHhhhcCCCCeEEEEEEcCCCCChH
Q 007800 544 MKTATGEQKDSLCFIEVFVHKDDTSK 569 (589)
Q Consensus 544 l~~a~~~~~~gp~viev~~~~~~~~~ 569 (589)
|+++++ .+||.||||++++++.++
T Consensus 543 l~~a~~--~~gp~lIev~~~~~~~p~ 566 (578)
T PRK06112 543 LAAAMA--APGPTLIEVITDPSAFPP 566 (578)
T ss_pred HHHHHh--CCCCEEEEEEcCcccCCC
Confidence 999986 889999999999988876
No 47
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=9e-88 Score=743.73 Aligned_cols=519 Identities=21% Similarity=0.246 Sum_probs=415.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++++|++.|+++||+||||+||+++.++++++.+ ++|++|.||||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 9 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 9 LTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQA-EGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-CCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 4799999999999999999999999999999999964 689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++|+.+++|||+|+|+.+....+.+ +..+ +..||..+++++|||+.++.+++++++.|++|++.|.++ |
T Consensus 88 l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~~~---q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~ 161 (569)
T PRK09259 88 LTALANATTNCFPMIMISGSSEREIVDLQ---QGDY---EELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRP 161 (569)
T ss_pred HHHHHHHHhcCCCEEEEEccCCccccccc---CCCc---cccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCC
Confidence 99999999999999999999876532211 0112 335889999999999999999999999999999999996 7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCC-CCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 184 KPVYISISCNLPGIPHPTFARD-PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
|||||+||.|++..+.+..... +......+. ....+.+..+++++++|.+||||+|++|.|++++++.+++.+|||++
T Consensus 162 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l 240 (569)
T PRK09259 162 GGVYLDLPAKVLAQTMDADEALTSLVKVVDPA-PAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKT 240 (569)
T ss_pred CcEEEEeCHHHhhCcccccccccccccccCCC-CCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHH
Confidence 9999999999987432211000 000000010 11123467899999999999999999999999989999999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCccccccc-ccCCCCceEEEcCCceeec
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~ 341 (589)
++||++|++|||.||++||+++|. ..++++++||+||+||+++++..+..+. .+.++.++||||.|+.+++
T Consensus 241 ~iPV~tt~~gkg~~~e~hpl~~G~--------~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~ 312 (569)
T PRK09259 241 GIPFLPMSMAKGLLPDTHPQSAAA--------ARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEID 312 (569)
T ss_pred CCCEEecccccccCCCCChhhhhH--------HHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhc
Confidence 999999999999999999999985 3567789999999999999887665442 3445678999999998876
Q ss_pred CCCcc----ccccHHHHHHHHHHHhhcC----chhh-hh---hhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCC--CC
Q 007800 342 NGPSL----GWVFMADFLSALAKKLRKN----TTAL-EN---YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS--GD 407 (589)
Q Consensus 342 ~~~~~----~~~~~~~~l~~L~~~l~~~----~~~~-~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~--~~ 407 (589)
..+. ...|++.+|++|.+.++.. ...| .. +++...............++++..+++.|++.++ ++
T Consensus 313 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~d 391 (569)
T PRK09259 313 -SNRPIAAPVVGDIGSVMQALLAGLKQNTFKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPD 391 (569)
T ss_pred -CCccCceeEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCCCC
Confidence 3221 1248999999999888642 1122 11 1111111110001113357999999999999995 47
Q ss_pred CEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCe
Q 007800 408 TAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRS 486 (589)
Q Consensus 408 ~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v 486 (589)
.+++.|.|++..+.. ++...++.+++.+.++|+|||++|+|||++++ ++++||+++|||||+|+++||+|+++|++|+
T Consensus 392 ~iv~~~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi 470 (569)
T PRK09259 392 IYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDSAFGFSGMEVETICRYNLPV 470 (569)
T ss_pred EEEEeCchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-CCCcEEEEecCccccccHHHHHHHHHcCCCE
Confidence 778888776655543 34444455588888999999999999999999 6899999999999999999999999999999
Q ss_pred EEEEEeCCchhh--hhhhcC-CC--CCCC-CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007800 487 IIFLINNGGYTI--EVEIHD-GP--YNVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560 (589)
Q Consensus 487 ~ivv~nN~~~~~--~~~~~~-~~--~~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev 560 (589)
++||+||++|.. +...+. .. ...+ +++||.++|++||+ ++++|++.+||+++|++++. .++|.||||
T Consensus 471 ~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIev 543 (569)
T PRK09259 471 TVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGG-----VGYNVTTPDELRHALTEAIA--SGKPTLINV 543 (569)
T ss_pred EEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 999999998732 222211 11 1233 67999999999999 99999999999999999997 899999999
Q ss_pred EcCCCCChH
Q 007800 561 FVHKDDTSK 569 (589)
Q Consensus 561 ~~~~~~~~~ 569 (589)
.+++++.++
T Consensus 544 ~id~~~~~~ 552 (569)
T PRK09259 544 VIDPAAGTE 552 (569)
T ss_pred EECCCCCCC
Confidence 999877654
No 48
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-87 Score=735.55 Aligned_cols=510 Identities=23% Similarity=0.294 Sum_probs=418.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC-CCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
+++++++|++.|+++||++|||+||+++.+|+++|.++ ++|++|.++||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N 82 (542)
T PRK08266 3 TMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLN 82 (542)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 47999999999999999999999999999999999764 579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++|+++||.+++|||+|+|+++....+.+.. +.++..||..+++++|||+.++.+++++++.|++|++.|.++
T Consensus 83 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~-----~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 157 (542)
T PRK08266 83 AGAALLTAYGCNSPVLCLTGQIPSALIGKGRG-----HLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGR 157 (542)
T ss_pred HHHHHHHHHhhCCCEEEEecCCChhhccCCCC-----cceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998875554321 112335789999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++..+.+.. ..+ .... .....++...+++++++|.+||||+|++|.|+. ++.++|.+|+|++
T Consensus 158 ~GPV~l~iP~dv~~~~~~~~-~~~-~~~~---~~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~~ 230 (542)
T PRK08266 158 PRPVALEMPWDVFGQRAPVA-AAP-PLRP---APPPAPDPDAIAAAAALIAAAKNPMIFVGGGAA--GAGEEIRELAEML 230 (542)
T ss_pred CCcEEEEeCHhHhhCccccc-ccc-cccC---CCCCCCCHHHHHHHHHHHHhCCCCEEEECCChh--hHHHHHHHHHHHH
Confidence 79999999999976432211 000 1100 011123456789999999999999999999964 5889999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
|+||++|+++||.||++||+++|.. .+++++++||+||+||+++++. +..|..+.+..++||||.|+..++
T Consensus 231 g~pv~tt~~~kg~~~~~hp~~~g~~-------~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~- 301 (542)
T PRK08266 231 QAPVVAFRSGRGIVSDRHPLGLNFA-------AAYELWPQTDVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMR- 301 (542)
T ss_pred CCCEEEeccccccCCCCCccccCCH-------HHHHHHHhCCEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhC-
Confidence 9999999999999999999998763 4678899999999999999887 545654455668999999998886
Q ss_pred CCcccc----ccHHHHHHHHHHHhhcC---chhh-hhhhhhcCCCCCCCCCCCCCCcCHH-HHHHHHHhhCCCCCEEEec
Q 007800 343 GPSLGW----VFMADFLSALAKKLRKN---TTAL-ENYRRIYVPPGIPVKRAQNEPLRVN-VLFKHIQDMLSGDTAVIAE 413 (589)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~L~~~l~~~~iiv~d 413 (589)
+ +..+ .|++.+|++|.+.++.. ...| ..+.+.+.... . . ...+++. .+++.|++.+|++.+++.|
T Consensus 302 ~-~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~~l~~~lp~d~ivv~d 375 (542)
T PRK08266 302 R-LKPDVAIVADAKAGTAALLDALSKAGSKRPSRRAELRELKAAAR-Q-R---IQAVQPQASYLRAIREALPDDGIFVDE 375 (542)
T ss_pred C-cCCCceEecCHHHHHHHHHHhhhhcccCchHHHHHHHHHHHhhh-h-c---cccCCHHHHHHHHHHHhcCCCcEEEeC
Confidence 3 3222 48899999999887642 1112 12211110000 0 0 0135664 4799999999999999999
Q ss_pred CCcccccccc-ccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEe
Q 007800 414 TGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLIN 492 (589)
Q Consensus 414 ~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~n 492 (589)
+|++..|..+ +...++.+++.+..+|+|||++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+|
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~ivv~N 455 (542)
T PRK08266 376 LSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTVVFN 455 (542)
T ss_pred CcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEe
Confidence 9988766543 444555668888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhh----hhcCCC--CCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 493 NGGYTIEV----EIHDGP--YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 493 N~~~~~~~----~~~~~~--~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
|++|++.+ ..+++. +.++.++||.++|++||+ ++++|++.++|+++|+++++ .++|.||||.|++.+
T Consensus 456 N~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~liev~i~~~~ 528 (542)
T PRK08266 456 NNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGV-----AAFRVDSPEELRAALEAALA--HGGPVLIEVPVPRGS 528 (542)
T ss_pred CCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCcEEEEEEecCCC
Confidence 99999832 112232 244567899999999999 99999999999999999986 789999999999876
Q ss_pred ChH
Q 007800 567 TSK 569 (589)
Q Consensus 567 ~~~ 569 (589)
...
T Consensus 529 ~~~ 531 (542)
T PRK08266 529 EAS 531 (542)
T ss_pred Ccc
Confidence 543
No 49
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=3e-86 Score=730.30 Aligned_cols=516 Identities=20% Similarity=0.227 Sum_probs=413.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCC-----CCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCc
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-----ELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTV 99 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~-----~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~Gp 99 (589)
+++++|+|++.|+++||+||||+||+++.+|++++.+++ +|++|.||||++|+|||+||+|+||+ +||++|+||
T Consensus 6 ~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GP 85 (569)
T PRK08327 6 MYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDV 85 (569)
T ss_pred cccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 479999999999999999999999999999999997543 39999999999999999999999999 999999999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCccccCCcc---ceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHH
Q 007800 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (589)
Q Consensus 100 G~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~ 176 (589)
|++|+++||++||.+++|||+|+|+.+....+++. ..++.++ +..||..+++++|||+.++.+++++.+.|++|+
T Consensus 86 G~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~q--e~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~ 163 (569)
T PRK08327 86 GTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQ--EMRDQGGLVREYVKWDYEIRRGDQIGEVVARAI 163 (569)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccch--hhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999998876544321 1112222 235889999999999999999999999999999
Q ss_pred HHhHhc-CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHH
Q 007800 177 STALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAF 255 (589)
Q Consensus 177 ~~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l 255 (589)
+.|.++ +|||||+||.|++..+.+... .+...... .....+.++.+++++++|++||||+|++|+|+.++++.+++
T Consensus 164 ~~a~~~~~GPV~i~iP~Dv~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l 240 (569)
T PRK08327 164 QIAMSEPKGPVYLTLPREVLAEEVPEVK-ADAGRQMA--PAPPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASL 240 (569)
T ss_pred HHHhcCCCCCEEEECcHHHHhhhccccc-cCccccCC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHHH
Confidence 999986 799999999999874322110 00000010 11112356789999999999999999999999999999999
Q ss_pred HHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcC
Q 007800 256 IELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQP 335 (589)
Q Consensus 256 ~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~ 335 (589)
.+|||++++||++|++|||.||++||+++|.+ +++++++||+||+||+++++..+.. .+.+..++||||.
T Consensus 241 ~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~--------~~~~~~~aDlvl~lG~~l~~~~~~~--~~~~~~~vi~Id~ 310 (569)
T PRK08327 241 RRLAEELAIPVVEYAGEVVNYPSDHPLHLGPD--------PRADLAEADLVLVVDSDVPWIPKKI--RPDADARVIQIDV 310 (569)
T ss_pred HHHHHHhCCCEEecCCCceeCCCCCccccccc--------cchhhhhCCEEEEeCCCCCCccccc--cCCCCCeEEEEeC
Confidence 99999999999999999999999999999873 6778899999999999987654422 2345568999999
Q ss_pred CceeecC--CCccc----cccHHHHHHHHHHHhhcCch-----------hhhhhhhhcCCCCC-C-CCCCCCCCcCHHHH
Q 007800 336 HRVTVGN--GPSLG----WVFMADFLSALAKKLRKNTT-----------ALENYRRIYVPPGI-P-VKRAQNEPLRVNVL 396 (589)
Q Consensus 336 d~~~~~~--~~~~~----~~~~~~~l~~L~~~l~~~~~-----------~~~~~~~~~~~~~~-~-~~~~~~~~i~~~~~ 396 (589)
|+.+++. ..+.. ..|++.+|++|.+.++.... .|.+++........ . .....+.++++..+
T Consensus 311 d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 390 (569)
T PRK08327 311 DPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYL 390 (569)
T ss_pred ChhhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCCCCCcCHHHH
Confidence 9987751 12222 24899999999988864211 12112111101000 0 01123357999999
Q ss_pred HHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHH-
Q 007800 397 FKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQE- 475 (589)
Q Consensus 397 ~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~e- 475 (589)
+++|++.++++.+++.|.+ +...++..+++.+|+.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+++|
T Consensus 391 ~~~l~~~l~~~~~vv~~~~---~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~ 467 (569)
T PRK08327 391 SYCLGEVADEYDAIVTEYP---FVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEA 467 (569)
T ss_pred HHHHHHhcCccceEEeccH---HHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcHH
Confidence 9999999999888886644 223455666666799999999999999999999999999999999999999999866
Q ss_pred -HHHHHHhCCCeEEEEEeCCchhhhh----hhcCC-------C--CCCC-CCCChHHHHHHccCCCCCccEEEeCCHHHH
Q 007800 476 -ISTMIRCGQRSIIFLINNGGYTIEV----EIHDG-------P--YNVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDEL 540 (589)
Q Consensus 476 -l~ta~~~~l~v~ivv~nN~~~~~~~----~~~~~-------~--~~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~~l 540 (589)
|+|++++++|+++||+||++|++.+ .++.. . ...+ +++||.++|++||+ ++++|++.++|
T Consensus 468 ~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el 542 (569)
T PRK08327 468 AHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGG-----YGERVEDPEEL 542 (569)
T ss_pred HHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCC-----CceEeCCHHHH
Confidence 8999999999999999999999832 12211 1 2334 67899999999999 89999999999
Q ss_pred HHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 541 TEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 541 ~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
+++|+++++ .+.+||+||||.+++
T Consensus 543 ~~al~~a~~~~~~~~gp~liev~v~~ 568 (569)
T PRK08327 543 KGALRRALAAVRKGRRSAVLDVIVDR 568 (569)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEccC
Confidence 999999986 112789999999975
No 50
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=5.3e-85 Score=714.80 Aligned_cols=492 Identities=20% Similarity=0.150 Sum_probs=394.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
|+++|+|++.|+++||+||||+||+++.+|+|++.+.++|++|.||||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 5799999999999999999999999999999999765689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-CC
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (589)
+||++||.+++|||+|+|+.+....+.+. + +..||..+++++|||+.++++++++++.|++|++.|.++ +|
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~G 152 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDA-----P---LTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQ 152 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCc-----c---cccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999998887554431 2 234788999999999999999999999999999999997 79
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||+||.|++..+.+. ... .....+ ...+++..+++++++|.+||||+|++|.|+.++++.+++.+|||++++
T Consensus 153 PV~l~iP~Dv~~~~~~~--~~~-~~~~~~---~~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~ 226 (514)
T PRK07586 153 VATLILPADVAWSEGGP--PAP-PPPAPA---PAAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGA 226 (514)
T ss_pred cEEEEeccchhcccccc--ccc-cCCCCC---CCCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCC
Confidence 99999999998642211 111 111111 112346789999999999999999999999999999999999999999
Q ss_pred ceEEcc------CCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCce
Q 007800 265 PIAIMP------SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (589)
Q Consensus 265 Pv~tt~------~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (589)
||++|. ++||+||++|+.+.+ +.+++++++||+||++|+++... ...+ .....++++.+.+..
T Consensus 227 pV~t~~~~~~~~~gkg~~~~~~~~~~~--------~~~~~~~~~aDlvl~vG~~~~~~-~~~~--~~~~~~~~~~~~~~~ 295 (514)
T PRK07586 227 RLLAETFPARMERGAGRPAVERLPYFA--------EQALAQLAGVRHLVLVGAKAPVA-FFAY--PGKPSRLVPEGCEVH 295 (514)
T ss_pred CEEecccccccccCCCCCCcccccchH--------HHHHHHHhcCCEEEEECCCCccc-cccc--CCCccccCCCCceEE
Confidence 999865 599999998876543 35678899999999999986321 1011 011112222222222
Q ss_pred eecCCCccccccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccc
Q 007800 339 TVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW 418 (589)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~ 418 (589)
.+. ....|++.+|++|.+.++...... .+.+.. .....+.++++.++++.|++.+|++++++.|+|++.
T Consensus 296 ~~~----~~~~d~~~~l~~L~~~l~~~~~~~-~~~~~~------~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~ 364 (514)
T PRK07586 296 TLA----GPGEDAAAALEALADALGAKPAAP-PLAAPA------RPPLPTGALTPEAIAQVIAALLPENAIVVDESITSG 364 (514)
T ss_pred EEC----CCcccHHHHHHHHHHhhcccccch-hhhhcc------ccCCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCcCH
Confidence 221 123588999999988775422110 111000 011124469999999999999999999999999987
Q ss_pred cccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchh
Q 007800 419 FNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYT 497 (589)
Q Consensus 419 ~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~ 497 (589)
.|.. ++...++.+|+.+.+ |+|||++|+|||+++|.|+++||+++|||||+|+++||+|++++++|+++||+||++|+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~ivV~NN~~y~ 443 (514)
T PRK07586 365 RGFFPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIFANRAYA 443 (514)
T ss_pred HHHHHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEEEEeCchhH
Confidence 7654 344444555877666 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh----hcC-C------CCCCC--CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007800 498 IEVE----IHD-G------PYNVI--KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 562 (589)
Q Consensus 498 ~~~~----~~~-~------~~~~~--~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~ 562 (589)
+.+. ... . .+.++ +++||.++|++||+ ++++|+++++|+++|+++++ .++|.||||.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~el~~al~~a~~--~~~p~liev~~ 514 (514)
T PRK07586 444 ILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGV-----PARRVTTAEEFADALAAALA--EPGPHLIEAVV 514 (514)
T ss_pred HHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCC-----cEEEeCCHHHHHHHHHHHHc--CCCCEEEEEEC
Confidence 8432 111 1 12233 46899999999999 99999999999999999996 78999999975
No 51
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=5e-85 Score=714.08 Aligned_cols=489 Identities=17% Similarity=0.145 Sum_probs=393.2
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
++++++|+|++.|+++||+||||+||+.+.+|+|++.+.++|++|.||||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N 82 (518)
T PRK12474 3 QTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLAN 82 (518)
T ss_pred cCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhH
Confidence 468999999999999999999999999999999999755689999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++||++||.+++|||+|+|+.+....+.+. + +..|+..+++++|||+.++.+++++++.|+||++.|.++
T Consensus 83 ~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~ 154 (518)
T PRK12474 83 GLANLHNARRAASPIVNIVGDHAVEHLQYDA-----P---LTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAP 154 (518)
T ss_pred hHHHHHHHhhcCCCEEEEeccCchhhcCCCC-----c---cccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998876444331 1 224788999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++..+.+.. ..+.+. ..+ ..++.+.+++++++|.+||||+|++|.|+.++++.+++.+|+|++
T Consensus 155 ~GPV~l~iP~Dv~~~~~~~~-~~~~~~-~~~----~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~ 228 (518)
T PRK12474 155 GGIATLIMPADVAWNEAAYA-AQPLRG-IGP----APVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKT 228 (518)
T ss_pred CCcEEEEechhhhcccccCC-cCCCCC-CCC----CCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHH
Confidence 69999999999986422110 111110 111 123456899999999999999999999999988999999999999
Q ss_pred CCceEEc------cCCccCCCC-CCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCc--cc-ccccc-cCCCCceE
Q 007800 263 GYPIAIM------PSGKGLVPE-HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY--SS-VGYSL-LIKKEKAI 331 (589)
Q Consensus 263 ~~Pv~tt------~~~~g~~~~-~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~--~~-~~~~~-~~~~~~~i 331 (589)
|+||++| +++||.||+ +||++. +...+++++||+||+||++++.. .+ ..+.. +.+..+++
T Consensus 229 g~PV~~t~~~~~~~~gkg~~~~~~~~~~~---------~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~ 299 (518)
T PRK12474 229 GVRLYCDTFAPRIERGAGRVPIERIPYFH---------EQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIV 299 (518)
T ss_pred CCCEEEecCcccccCCCCCCCCcccccch---------HHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEE
Confidence 9999975 358999995 667642 34667899999999999986321 11 11111 22234566
Q ss_pred EEcCCceeecCCCccccccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 007800 332 IVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (589)
Q Consensus 332 ~id~d~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv 411 (589)
+++. .+.|++.+|++|.+.++........+ .... ......++++..++++|++.++++.+++
T Consensus 300 ~~~~-----------~~~d~~~~l~~L~~~l~~~~~~~~~~-----~~~~--~~~~~~~i~~~~~~~~l~~~l~~d~iv~ 361 (518)
T PRK12474 300 YLAQ-----------PDEDLAQALQDLADAVDAPAEPAART-----PLAL--PALPKGALNSLGVAQLIAHRTPDQAIYA 361 (518)
T ss_pred EECC-----------CCcCHHHHHHHHHHhccccccccccc-----cccc--cCCCCCCcCHHHHHHHHHHHCCCCeEEE
Confidence 5543 12478999999988775422110000 0000 0112346999999999999999999999
Q ss_pred ecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEE
Q 007800 412 AETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFL 490 (589)
Q Consensus 412 ~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv 490 (589)
.|+|++..|.. ++...++.+++.+.+ |+|||++|+|||+++|+|+++||+++|||||+|+++||+|+++|++|+++||
T Consensus 362 ~d~g~~~~~~~~~~~~~~p~~~~~~~~-gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv~iiV 440 (518)
T PRK12474 362 DEALTSGLFFDMSYDRARPHTHLPLTG-GSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVTVVI 440 (518)
T ss_pred ECCCcCHHHHHHhhcccCCCCEEccCC-CccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHHHCCCcEEEE
Confidence 99999876653 344445555776644 9999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhhhh---hcC----C----CCCCC--CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEE
Q 007800 491 INNGGYTIEVE---IHD----G----PYNVI--KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCF 557 (589)
Q Consensus 491 ~nN~~~~~~~~---~~~----~----~~~~~--~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~v 557 (589)
+||++|++.++ .+. + .+.++ +++||.++|++||+ ++++|++++||.++|+++++ .++|.|
T Consensus 441 ~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~rv~~~~eL~~al~~a~~--~~~p~l 513 (518)
T PRK12474 441 FANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGV-----EASRATTAEEFSAQYAAAMA--QRGPRL 513 (518)
T ss_pred EcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHc--CCCCEE
Confidence 99999998321 111 1 12333 35899999999999 99999999999999999996 899999
Q ss_pred EEEEc
Q 007800 558 IEVFV 562 (589)
Q Consensus 558 iev~~ 562 (589)
|||.+
T Consensus 514 iev~~ 518 (518)
T PRK12474 514 IEAMI 518 (518)
T ss_pred EEEEC
Confidence 99975
No 52
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=9.4e-85 Score=714.38 Aligned_cols=506 Identities=22% Similarity=0.266 Sum_probs=415.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++++|++.|+++||+||||+||+++.+|++++.+ +|++|.|+||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~--~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~ 88 (530)
T PRK07092 11 MTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD--DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNA 88 (530)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh--cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHH
Confidence 4899999999999999999999999999999999963 69999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++||.+++|||+|+|+.+....+++.++ +..||..+++++|||+.++.+++++++.|++|++.|.++ +
T Consensus 89 ~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-------~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 161 (530)
T PRK07092 89 MGNLFTAFKNHTPLVITAGQQARSILPFEPFL-------AAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPR 161 (530)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCccchh-------cccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988765554211 124678999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+ .... . ..... ....+++..+++++++|.+||||+|++|.|++++++.++|++|+|++|
T Consensus 162 GPv~l~iP~d~~~~~--~~~~-~-~~~~~---~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg 234 (530)
T PRK07092 162 GPVFVSIPYDDWDQP--AEPL-P-ARTVS---SAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHR 234 (530)
T ss_pred CcEEEEccHHHhhCc--cccc-c-cCCCC---CCCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHC
Confidence 999999999997642 2111 1 00011 111234567899999999999999999999998889999999999999
Q ss_pred CceEEccC-CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCccccccc-ccCCCCceEEEcCCceeec
Q 007800 264 YPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 264 ~Pv~tt~~-~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~ 341 (589)
+||++|++ +||.||++||+++|.+ |. +.....+++++||+||+||+++.+..+..|. .+.++.++||||.|+..++
T Consensus 235 ~pV~~t~~~~kg~~~~~hp~~~G~~-g~-~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 312 (530)
T PRK07092 235 APVWVAPMSGRCSFPEDHPLFAGFL-PA-SREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAA 312 (530)
T ss_pred CcEEEecCCCcCcCCCCCccccCcC-Cc-cHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhc
Confidence 99999876 7999999999999987 33 3466778999999999999975444443343 3444668999999998775
Q ss_pred CCCccc---cccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccc
Q 007800 342 NGPSLG---WVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW 418 (589)
Q Consensus 342 ~~~~~~---~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~ 418 (589)
..... ..|++.+|++|.+.++........+++. .. .......++++..+++.|++.++++++++.|+|++.
T Consensus 313 -~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~ 386 (530)
T PRK07092 313 -WAPMGDAIVGDIRLALRDLLALLPPSARPAPPARPM--PP---PAPAPGEPLSVAFVLQTLAALRPADAIVVEEAPSTR 386 (530)
T ss_pred -CCCCCCcccCCHHHHHHHHHHhhccccccchhhhhc--cc---cccCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCccH
Confidence 22211 2488999999999886432111111111 00 011234579999999999999999999999999886
Q ss_pred ccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchh
Q 007800 419 FNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYT 497 (589)
Q Consensus 419 ~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~ 497 (589)
.|. .++...++.+|+.+ .+|+||+++|+|+|++++.|+++||+++|||+|+|+.+||+|++++++|+++||+||++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~-~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~~~vv~NN~~~~ 465 (530)
T PRK07092 387 PAMQEHLPMRRQGSFYTM-ASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNGRYG 465 (530)
T ss_pred HHHHHhcCcCCCCceEcc-CCCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHHhCCCcEEEEEeChHHH
Confidence 654 34555555557765 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh----c-CC-CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007800 498 IEVEI----H-DG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVH 563 (589)
Q Consensus 498 ~~~~~----~-~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~ 563 (589)
+.+.. + +. .+.+++++||.++|++||+ ++++|++.++|+++++++++ .++|.||||.+|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~-----~~~~v~~~~~l~~al~~a~~--~~~p~liev~~d 530 (530)
T PRK07092 466 ALRWFAPVFGVRDVPGLDLPGLDFVALARGYGC-----EAVRVSDAAELADALARALA--ADGPVLVEVEVA 530 (530)
T ss_pred HHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEcC
Confidence 83221 1 11 3345578999999999999 99999999999999999986 889999999986
No 53
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=3.9e-84 Score=646.37 Aligned_cols=519 Identities=22% Similarity=0.278 Sum_probs=431.6
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
+.+++++.+++.|+.+||+||||+-|.++.+|..+++. .+|+||.||||++|+|+|++|++.||+ |||++++|||++|
T Consensus 12 ~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqa-lGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~h 90 (571)
T KOG1185|consen 12 SSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQA-LGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPGLTH 90 (571)
T ss_pred ccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHH-cCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCChHHH
Confidence 36899999999999999999999999999999999987 599999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++|++||+.+++|||+|+|..++.+.+++. + |-.||+.+++|+|||+.+++++++|+..+++|++.|.++
T Consensus 91 al~gv~NA~~n~wPll~IgGsa~~~~~~rGa-----f---Qe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~ 162 (571)
T KOG1185|consen 91 ALAGVANAQMNCWPLLLIGGSASTLLENRGA-----F---QELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGR 162 (571)
T ss_pred HHHHhhhhhhccCcEEEEecccchhhhcccc-----c---ccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCC
Confidence 9999999999999999999999888777662 2 346899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCC----CCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHH
Q 007800 183 SKPVYISISCNLPGIPHPTFA----RDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~l 258 (589)
|||||+++|.|+.......+. ..+.+....|.. +.+.+..+++++++|++||||++++|.|+.++.+.++|++|
T Consensus 163 PG~~yvD~P~d~v~~~~~~e~~~~~~~p~~~~p~P~i--~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~ 240 (571)
T KOG1185|consen 163 PGPVYVDLPADVVLPSKMVEKEIDVSEPQPPIPLPPI--PGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKF 240 (571)
T ss_pred CCceEEecccceeeeecccccccccCCCCCCCCCCCC--CCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHH
Confidence 899999999996442111110 012222122211 23457799999999999999999999999999999999999
Q ss_pred HHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccc-cCCCCceEEEcCCc
Q 007800 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHR 337 (589)
Q Consensus 259 ae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~ 337 (589)
.|.+|+|++.|+||||++|++||++++. ....+++.||+||++|+++++..+++..+ +.++.|+|+||.++
T Consensus 241 Ve~~glPflptpMgKGll~d~hPl~v~~--------aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~ 312 (571)
T KOG1185|consen 241 VETTGLPFLPTPMGKGLLPDNHPLNVSS--------ARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINP 312 (571)
T ss_pred HHhcCCCcccCcccccCCCCCCchhhhH--------HHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCH
Confidence 9999999999999999999999999865 46678999999999999999999988764 45678999999999
Q ss_pred eeecCCC-cccc----ccHHHHHHHHHHHhhcCch-------hhhhhhhhcCCCC---CCCCCCCCCCcCHHHHHHHHHh
Q 007800 338 VTVGNGP-SLGW----VFMADFLSALAKKLRKNTT-------ALENYRRIYVPPG---IPVKRAQNEPLRVNVLFKHIQD 402 (589)
Q Consensus 338 ~~~~~~~-~~~~----~~~~~~l~~L~~~l~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~L~~ 402 (589)
.+++ .+ .-++ .|+..++.+|.+.++..+. |+...++....+. ......+..++++..+++.+++
T Consensus 313 Eel~-~n~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre 391 (571)
T KOG1185|consen 313 EELG-NNFVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRE 391 (571)
T ss_pred HHHh-cccCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHH
Confidence 9997 33 2222 3899999999999987643 2222221111111 1112345568999999999999
Q ss_pred hCC-CCCEEEecCCcccc-ccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHH
Q 007800 403 MLS-GDTAVIAETGDSWF-NCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMI 480 (589)
Q Consensus 403 ~l~-~~~iiv~d~G~~~~-~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~ 480 (589)
.|+ ++.++|+|.++..- ....+....+++.+-.+.||+||.|++.|+|+|++.|+++|+|+-||++|.|+.+|+.|++
T Consensus 392 ~L~~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~v 471 (571)
T KOG1185|consen 392 LLPNDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFV 471 (571)
T ss_pred hcCCCCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHH
Confidence 999 88999999888753 3333333334558899999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEEeCCc-hhh----hhhhcCC-------CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhh
Q 007800 481 RCGQRSIIFLINNGG-YTI----EVEIHDG-------PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT 548 (589)
Q Consensus 481 ~~~l~v~ivv~nN~~-~~~----~~~~~~~-------~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~ 548 (589)
||++|+++||+||+| ||. ..++..+ +...+.+.+|++++++||+ +++.|+++++|.+++++++
T Consensus 472 R~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~-----kG~~v~t~~el~~~l~~a~ 546 (571)
T KOG1185|consen 472 RYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGG-----KGYFVSTVEELLAALQQAC 546 (571)
T ss_pred HhcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCC-----CceeeCCHHHHHHHHHHHH
Confidence 999999999996654 776 1222111 1123478999999999999 9999999999999999999
Q ss_pred hcCCCCeEEEEEEcCCCCChH
Q 007800 549 GEQKDSLCFIEVFVHKDDTSK 569 (589)
Q Consensus 549 ~~~~~gp~viev~~~~~~~~~ 569 (589)
+ ..++|+||+|.+++.+..+
T Consensus 547 q-~~~~psvINVlI~p~~~rk 566 (571)
T KOG1185|consen 547 Q-DTDKPSVINVLIGPTAFRK 566 (571)
T ss_pred h-cCCCCeEEEEEeccccccc
Confidence 5 5669999999999987643
No 54
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=6.9e-85 Score=722.27 Aligned_cols=531 Identities=17% Similarity=0.145 Sum_probs=414.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
++++++|++.|+++||++|||+||+++.+|++++.++++|++|.|+||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l 88 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLY 88 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhh
Confidence 7899999999999999999999999999999999765689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCCh--hhHHHHHHHHHHH---hH
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL--GDAHELIDTAIST---AL 180 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~--~~~~~~l~~A~~~---a~ 180 (589)
+||++||.+++|||+|+|+++....+++. .|..||.++++++|++..+..+. +.++..++++++. |.
T Consensus 89 ~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~--------~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~ 160 (568)
T PRK07449 89 PAVIEAGLTGVPLIVLTADRPPELRDCGA--------NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQ 160 (568)
T ss_pred HHHHHHhhcCCcEEEEECCCCHHHhcCCC--------CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999998877555432 23468899999999777766544 3345445555555 55
Q ss_pred hc-CCcEEEEeCCCCCCCCCC-CCCCCC--CCccC-CC--CCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHH
Q 007800 181 KE-SKPVYISISCNLPGIPHP-TFARDP--VPFFL-AP--KVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQK 253 (589)
Q Consensus 181 ~~-~gPV~i~iP~dv~~~~~~-~~~~~~--~~~~~-~~--~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~ 253 (589)
++ +|||||+||.|++..+.. .....+ .+... .+ ......+.+..+++++++|.+ |||+|++|.|++++ .+
T Consensus 161 ~~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~~--~~ 237 (568)
T PRK07449 161 TLQAGPVHINCPFREPLYPDDDDDTGSPWLAPLGDWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAEE--GQ 237 (568)
T ss_pred CCCCCCEEEeCCCCCCCCCCCcccccccccccccccccccccccccCccccchhhhhhhcc-CCeEEEECCCChHH--HH
Confidence 54 799999999998643211 000000 01000 00 000012234578899999998 99999999999864 39
Q ss_pred HHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEE
Q 007800 254 AFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIV 333 (589)
Q Consensus 254 ~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~i 333 (589)
++.+|+|++|+||++|+++|+.+|++||+++|++.+..+.+.+++++++||+||++|+++++..+..|.... ..++|||
T Consensus 238 ~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~~~-~~~~i~i 316 (568)
T PRK07449 238 AIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLADC-EPEYWVV 316 (568)
T ss_pred HHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHhcC-CCCEEEE
Confidence 999999999999999999999999999999998744446667788999999999999999766555553222 3389999
Q ss_pred cCCceeecCCCccc----cccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCC-CCCCCCCCCcCHHHHHHHHHhhCCCCC
Q 007800 334 QPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNTTALENYRRIYVPPGI-PVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (589)
Q Consensus 334 d~d~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~L~~~l~~~~ 408 (589)
|.|+..++ ..+.. ..|++.+|++ ..... ...+...+...+..... ......+.++++..+++.|++.+|+++
T Consensus 317 d~d~~~~~-~~~~~~~~i~~d~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ 393 (568)
T PRK07449 317 DPGPGRLD-PAHHATRRLTASVATWLEA-HPAEK-RKPWLQEWQALNEKAREAVREQLAEDTFTEAKVAAALADLLPEGG 393 (568)
T ss_pred CCCCCcCC-CCCCceEEEEEcHHHHHHh-ccccc-chHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhCCCCC
Confidence 99999886 32222 2478899988 32211 11111111111000000 000012346999999999999999999
Q ss_pred EEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeE
Q 007800 409 AVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487 (589)
Q Consensus 409 iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ 487 (589)
++++|.|++.++. .++..+++.+++.+.++++|||++|+|||++++ |+++||+++|||||+|+++||+|++++++|++
T Consensus 394 iv~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~~eL~Ta~r~~l~i~ 472 (568)
T PRK07449 394 QLFVGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDLNGLLLLKQVPAPLT 472 (568)
T ss_pred eEEEECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCcHHHHhhcccCCCeE
Confidence 9999999887654 344555556688889999999999999999999 89999999999999999999999999999999
Q ss_pred EEEEeCCchhhhhhhc--------CCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEE
Q 007800 488 IFLINNGGYTIEVEIH--------DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 559 (589)
Q Consensus 488 ivv~nN~~~~~~~~~~--------~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vie 559 (589)
+||+||++|++.+... +..+....++||+++|++||+ ++++|++++||+++|+++++ .++|+|||
T Consensus 473 ivVlNN~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~V~~~~eL~~al~~a~~--~~~p~lIe 545 (568)
T PRK07449 473 IVVVNNNGGGIFSLLPQPEEEPVFERFFGTPHGVDFAHAAAMYGL-----EYHRPETWAELEEALADALP--TPGLTVIE 545 (568)
T ss_pred EEEEECCCCccccCCCCCCCcchhhHhhcCCCCCCHHHHHHHcCC-----CccCCCCHHHHHHHHHHHhc--CCCCEEEE
Confidence 9999999999632211 112233467999999999999 89999999999999999986 88999999
Q ss_pred EEcCCCCChHHHHHHHHHhhh
Q 007800 560 VFVHKDDTSKELLEWGSRVSA 580 (589)
Q Consensus 560 v~~~~~~~~~~~~~~~~~~~~ 580 (589)
|.+++++.++.++.+.+.++.
T Consensus 546 v~id~~~~~~~~~~~~~~~~~ 566 (568)
T PRK07449 546 VKTNRSQGAQLLQALLAQVSH 566 (568)
T ss_pred EeCChhhhHHHHHHHHHHhhc
Confidence 999999999999888876553
No 55
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=3.8e-84 Score=634.16 Aligned_cols=522 Identities=20% Similarity=0.248 Sum_probs=438.6
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
..+|+|.+.++|.++||++|||+||+.++|++|++.+++.+++|+.|||++|++||.||+|++|+ |||++|||||++|.
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNv 169 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNV 169 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCcccc
Confidence 37999999999999999999999999999999999998899999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++++++|+.|++||+++|||.|+...+++ .+|+ .|.+.+-+++|||.+.+.+.++++..|++||.+|.++ |
T Consensus 170 vtp~ADAlaDg~PlVvftGQVptsaIGtD-----AFQE---adiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRP 241 (675)
T KOG4166|consen 170 VTPLADALADGVPLVVFTGQVPTSAIGTD-----AFQE---ADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRP 241 (675)
T ss_pred cchhhHHhhcCCcEEEEecccchhhcccc-----hhcc---CCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCC
Confidence 99999999999999999999999988776 3332 2457899999999999999999999999999999997 8
Q ss_pred CcEEEEeCCCCCCCC--CCCCCCCCCCcc----CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchh-hHHHHHH
Q 007800 184 KPVYISISCNLPGIP--HPTFARDPVPFF----LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVA-KAQKAFI 256 (589)
Q Consensus 184 gPV~i~iP~dv~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~-~~~~~l~ 256 (589)
|||.+++|.|+.... .+....-..+.. ..+.. ........+++++++|+.+|+||+++|.|+..+ +....|.
T Consensus 242 GPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~-~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~ 320 (675)
T KOG4166|consen 242 GPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKP-PEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLG 320 (675)
T ss_pred CCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCC-chhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHH
Confidence 999999999996531 111111011110 00111 111223679999999999999999999999874 4567999
Q ss_pred HHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCc-------
Q 007800 257 ELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK------- 329 (589)
Q Consensus 257 ~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~------- 329 (589)
+|.|+++|||.||.+|-|.++++.++.+.++ |..|.-++|.+++++|+||++|.||++..+++.+.|.+.++
T Consensus 321 ~fser~qIPVtttL~GLGs~d~~d~lSLhML-GMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~r 399 (675)
T KOG4166|consen 321 RFSERTQIPVTTTLMGLGSYDCDDELSLHML-GMHGTVYANYAVQHADLILAFGVRFDDRVTGNLSAFAPRARRAAAEGR 399 (675)
T ss_pred HHHHhhcCcceehhhcccCcCCCCchhhhhh-cccccceehhhhhccceeEEecceeccccccchhhhChhhhhhhhccc
Confidence 9999999999999999999999999999886 78888899999999999999999999999998888877665
Q ss_pred --eEEEcCCceeecCCCccc----cccHHHHHHHHHHHhhcCch-----hh---hhhhhhcCCCCCCCCCCCCCCcCHHH
Q 007800 330 --AIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNTT-----AL---ENYRRIYVPPGIPVKRAQNEPLRVNV 395 (589)
Q Consensus 330 --~i~id~d~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~i~~~~ 395 (589)
+||+|+++..+| +...+ +.|+...|..+...++.... |+ +.|++.. +.. .....+.+.+.|+.
T Consensus 400 ggIiHfdispknIg-Kvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~f-P~s-f~~~tpGe~ikPQ~ 476 (675)
T KOG4166|consen 400 GGIIHFDISPKNIG-KVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKF-PLS-FKEETPGEAIKPQY 476 (675)
T ss_pred CceEEEecCHHHhC-cccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhC-Cee-eeccCCccccChHH
Confidence 999999999998 44333 34788888888776654322 11 2232221 110 11223456799999
Q ss_pred HHHHHHhhCCC---CCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcc
Q 007800 396 LFKHIQDMLSG---DTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQV 471 (589)
Q Consensus 396 ~~~~L~~~l~~---~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~ 471 (589)
+++.|++...+ ..+|.+..|.+.+|+ +++...++..|+.+++.|.||+|+|+|||++.|+|+..||-+.||+||.|
T Consensus 477 vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~P~~iViDIDGDaSF~M 556 (675)
T KOG4166|consen 477 VIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVANPDAIVIDIDGDASFIM 556 (675)
T ss_pred HHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhcccccCcccEEEeccCCceeee
Confidence 99999998765 677888999999886 44555666679999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCeEEEEEeCCchhh----hhhhcCCCCCC--CCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHH
Q 007800 472 TAQEISTMIRCGQRSIIFLINNGGYTI----EVEIHDGPYNV--IKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMK 545 (589)
Q Consensus 472 ~~~el~ta~~~~l~v~ivv~nN~~~~~----~~~~~~~~~~~--~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~ 545 (589)
+.+||+|+++.++|+.|+|+||...|| +..+|...|.. -.++||-++|++||+ ++.+|+..+||++.++
T Consensus 557 t~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGi-----kalRV~K~edL~~k~k 631 (675)
T KOG4166|consen 557 TVQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGI-----KALRVTKKEDLREKIK 631 (675)
T ss_pred ehHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCC-----chheeehHHHHHHHHH
Confidence 999999999999999999999999998 33344444432 367999999999999 9999999999999999
Q ss_pred HhhhcCCCCeEEEEEEcCCCCC
Q 007800 546 TATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 546 ~a~~~~~~gp~viev~~~~~~~ 567 (589)
+.+. .+||+|+||.++..+.
T Consensus 632 efls--TkGPvLleV~v~~keh 651 (675)
T KOG4166|consen 632 EFLS--TKGPVLLEVIVPHKEH 651 (675)
T ss_pred HHhC--CCCCeEEEEEccCccc
Confidence 9997 8999999999987664
No 56
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=3.9e-75 Score=700.45 Aligned_cols=532 Identities=16% Similarity=0.139 Sum_probs=407.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
...+++|++.|+++||+||||+||+++.||++++.+.+++++|.++||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 4589999999999999999999999999999999765689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhH------HHHHHHHHHHh
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDA------HELIDTAISTA 179 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~------~~~l~~A~~~a 179 (589)
+||++|+.+++|||+||||+|....+++. .|..||..+|+++|||+.++.+++++ ++.+++|++.|
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga--------~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A 452 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGA--------NQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWA 452 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCC--------CcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999988666542 23468899999999999999999983 59999999999
Q ss_pred Hhc-CCcEEEEeCCCCCCCCCCCCC------------CCCCCc-cCC--CCCCChhhHHHHHHHHHHHHHhcCCCEEEeC
Q 007800 180 LKE-SKPVYISISCNLPGIPHPTFA------------RDPVPF-FLA--PKVSNQLGLEAAVEATADFLNKAVKPVLVGG 243 (589)
Q Consensus 180 ~~~-~gPV~i~iP~dv~~~~~~~~~------------~~~~~~-~~~--~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G 243 (589)
.++ +|||||+||.|.+........ ....+. ... +..+...+....+++++++|.+||||+|++|
T Consensus 453 ~s~rpGPVhL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPvIvaG 532 (1655)
T PLN02980 453 TSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGLLLIG 532 (1655)
T ss_pred hCCCCCCEEEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcEEEEc
Confidence 997 799999999764321110000 000000 000 0001011245678999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHhCCceEEccCC-c------cCCCC--CCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcC
Q 007800 244 PNIRVAKAQKAFIELADATGYPIAIMPSG-K------GLVPE--HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN 314 (589)
Q Consensus 244 ~g~~~~~~~~~l~~lae~~~~Pv~tt~~~-~------g~~~~--~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~ 314 (589)
.|+..+++. ++.+|||++++||++|+++ + |.||+ +||+++|.+ |..........+.++|+||+||++++
T Consensus 533 ~G~~~~~a~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~-g~~~~~~~~~~~~~aDlVl~iG~rl~ 610 (1655)
T PLN02980 533 AIHTEDDIW-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHL-DHALLSDSVRNWIQFDVVIQIGSRIT 610 (1655)
T ss_pred CCCchHHHH-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchH-HHHhCchhhhccCCCCEEEEeCCccc
Confidence 998776555 4589999999999999975 4 99999 899999986 43112234566789999999999987
Q ss_pred Cc-ccccccccCCCCceEEEcCCceeecCCCcc----ccccHHHHHHHHHHHhhcC--chhhhhhhhhcCC--CCCCCCC
Q 007800 315 DY-SSVGYSLLIKKEKAIIVQPHRVTVGNGPSL----GWVFMADFLSALAKKLRKN--TTALENYRRIYVP--PGIPVKR 385 (589)
Q Consensus 315 ~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~----~~~~~~~~l~~L~~~l~~~--~~~~~~~~~~~~~--~~~~~~~ 385 (589)
+. .+..+....+ .++||||.|+..++ ..+. ...|++.++++|.+..... ..|...+.+.... .......
T Consensus 611 s~~~t~~~~~~~~-~~~I~ID~d~~~i~-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 688 (1655)
T PLN02980 611 SKRVSQMLEKCFP-FSYILVDKHPCRHD-PSHLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALDGMVAQEISFQI 688 (1655)
T ss_pred cHHHHHHHHhCCC-CeEEEECCCCCccC-CcccceEEEEeCHHHHHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 43 3322322233 35999999998886 2222 1248899999886643221 1111222111100 0000000
Q ss_pred CCCCCcCHHHHHHHHHhhCCCCCEEEecCCccc----ccc-cccc-----------ccCCCeeEe-ccCccchhh--HHH
Q 007800 386 AQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW----FNC-QKLR-----------LPENCGYEF-QMQYGSIGW--SVG 446 (589)
Q Consensus 386 ~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~----~~~-~~~~-----------~~~~~~~~~-~~~~g~mG~--~l~ 446 (589)
....++++.++++.|++.+|++.+++.|.|++. .|. .++. ...+.+++. +.++|+||+ ++|
T Consensus 689 ~~~~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lp 768 (1655)
T PLN02980 689 HAESSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLS 768 (1655)
T ss_pred hcCCCcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHH
Confidence 112258899999999999999999999998642 232 2221 233444664 788899999 699
Q ss_pred HHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHh--CCCeEEEEEeCCchhhhhhh----------cCCCCCCCCCCC
Q 007800 447 ATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRC--GQRSIIFLINNGGYTIEVEI----------HDGPYNVIKNWD 514 (589)
Q Consensus 447 ~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~--~l~v~ivv~nN~~~~~~~~~----------~~~~~~~~~~~d 514 (589)
+|||++++. +++|++++|||||+|+++||+|++++ ++|+++||+||++|++.+.. ++..+....++|
T Consensus 769 aAIGaala~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~~d 847 (1655)
T PLN02980 769 TAIGFAVGC-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDIS 847 (1655)
T ss_pred HHHHHhhcC-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCCCC
Confidence 999999997 89999999999999999999999984 99999999999999984321 011122235799
Q ss_pred hHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHHh
Q 007800 515 YTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRV 578 (589)
Q Consensus 515 ~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~~~~~~ 578 (589)
|.++|++||+ ++++|++++||+++|++++. .++|.||||.|+++++.+..+.+.++.
T Consensus 848 f~~lA~a~G~-----~~~rV~~~~eL~~aL~~a~~--~~~p~lIEV~t~~~~~~~~~~~~~~~~ 904 (1655)
T PLN02980 848 IENLCLAHGV-----RHLHVGTKSELEDALFTSQV--EQMDCVVEVESSIDANAAFHSTLRKFA 904 (1655)
T ss_pred HHHHHHHcCC-----ceeecCCHHHHHHHHHHhhc--cCCCEEEEEecChhhhHHHHHHHHHHH
Confidence 9999999999 99999999999999999986 789999999999988888766666554
No 57
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=4.4e-68 Score=507.69 Aligned_cols=522 Identities=18% Similarity=0.227 Sum_probs=430.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhcc-Cc-eEEEEeCCcchHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLSV 104 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n~ 104 (589)
|..-|+-+-.|++.||+..||+||..+.|++.+|.+..+|+.|..||-.+|.+||.||.|++ |. |||+.||||..+.+
T Consensus 4 mravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagtdm 83 (592)
T COG3960 4 MRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDM 83 (592)
T ss_pred hhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCccch
Confidence 56678889999999999999999999999999999888899999999999999999999986 56 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++|++.|+.|++|+|+||||.|+....+. ..|..|...+.+|++||+.++..|..++..+++||.+..++ |
T Consensus 84 itglysa~adsipilcitgqaprarl~ke--------dfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rp 155 (592)
T COG3960 84 ITGLYSASADSIPILCITGQAPRARLHKE--------DFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRP 155 (592)
T ss_pred hhhhhhcccccccEEEecCCCchhhhchh--------hhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998733322 12345778999999999999999999999999999999996 8
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||.|++|.|++..+.+ +++.... ..+.+. +...+...+++..+|.+++||+|++|+|+.++++.+.+.+|||..|
T Consensus 156 gpvlidlp~dvq~aeie-fd~d~ye-pl~~~k--paatr~qaekalaml~~aerplivagggiinadaa~l~~efael~g 231 (592)
T COG3960 156 GPVLIDLPFDVQVAEIE-FDPDMYE-PLPVYK--PAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTG 231 (592)
T ss_pred CCeEEecccceEEEEEe-cCccccC-cCCcCC--chhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHcC
Confidence 99999999999875322 2221110 111111 2345677899999999999999999999999999999999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCC-CCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGA-VSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~-~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
+||+.|.||.|++|.|||+..|+. |+ .++++.+.-+..+|+|+-+|.++...-++......++.++||+|++|.++|
T Consensus 232 vpviptlmgwg~ipddhplmagm~-glqtshrygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptqig- 309 (592)
T COG3960 232 VPVIPTLMGWGCIPDDHPLMAGMV-GLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQIG- 309 (592)
T ss_pred CcccchhccccccCCcchhhcccc-cceecccccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEeccccccc-
Confidence 999999999999999999999996 55 456788888899999999999998888877666667889999999999998
Q ss_pred CCccccc----cHHHHHHHHHHHhhcCc-----hhhhhh---hhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 007800 343 GPSLGWV----FMADFLSALAKKLRKNT-----TALENY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (589)
Q Consensus 343 ~~~~~~~----~~~~~l~~L~~~l~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~ii 410 (589)
+...++. |+++.|..+++.-.+.+ ..|..| ++.+.........-++-|+.|+++++++++.++.+.-+
T Consensus 310 rvf~pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgrd~~y 389 (592)
T COG3960 310 RVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCY 389 (592)
T ss_pred eeecCccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCCceeE
Confidence 4333332 77888888776644321 123333 22221122222334566899999999999999999999
Q ss_pred EecCCccccc-cccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEE
Q 007800 411 IAETGDSWFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIF 489 (589)
Q Consensus 411 v~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~iv 489 (589)
|+-+|.+.+. ++++...+++.|+..+..|.+||.+|+|+|...|.|++.+|++.||-.|+|-+.||+..+++++|.+.|
T Consensus 390 vstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~pyihv 469 (592)
T COG3960 390 VTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHV 469 (592)
T ss_pred EEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccCceEEE
Confidence 9999998764 566666566569998999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCchhhhhhhc---CCCC------CCC-------CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cC
Q 007800 490 LINNGGYTIEVEIH---DGPY------NVI-------KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ 551 (589)
Q Consensus 490 v~nN~~~~~~~~~~---~~~~------~~~-------~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~ 551 (589)
|+||...|..++-+ +-.| ..+ -.+|-.++++++|+ +..+|.+++|+..+++++.. .+
T Consensus 470 ~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgc-----kairv~~p~e~a~af~~a~~lm~e 544 (592)
T COG3960 470 LVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC-----KAIRVFKPEDIAPAFEQAKALMAQ 544 (592)
T ss_pred EecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCc-----eeEEecChHHhhHHHHHHHHHHHh
Confidence 99999888732211 1111 111 34688899999999 99999999999999999865 45
Q ss_pred CCCeEEEEEEcCCCCC
Q 007800 552 KDSLCFIEVFVHKDDT 567 (589)
Q Consensus 552 ~~gp~viev~~~~~~~ 567 (589)
..-|+|||+.+.+-.+
T Consensus 545 h~vpvvve~ilervtn 560 (592)
T COG3960 545 HRVPVVVEVILERVTN 560 (592)
T ss_pred cCCCeeeehHHHHhhc
Confidence 7789999999887554
No 58
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-67 Score=519.93 Aligned_cols=531 Identities=20% Similarity=0.253 Sum_probs=419.0
Q ss_pred ccHHHHHHHHHHHcC---------CCEEEecCCc-chHHHHHhhhcCC-CCeEEecCchhHHHHhhhhhhhccCc---eE
Q 007800 27 GTLGRHLARRLVEIG---------AKDVFSVPGD-FNLTLLDHLIAEP-ELNLVGCCNELNAGYAADGYARSRGV---GA 92 (589)
Q Consensus 27 ~~~a~~i~~~L~~~G---------V~~vfg~pG~-~~~~l~~al~~~~-~i~~v~~~hE~~A~~~A~gyar~tg~---~v 92 (589)
+|.++++++.|.+.= |.-||.+-|. +...|=++|.+.+ .+.+...+||++-+++|.||+|...| -+
T Consensus 7 lT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~A 86 (617)
T COG3962 7 LTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIYA 86 (617)
T ss_pred hHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceeeE
Confidence 789999999998753 3457788885 5567888998765 49999999999999999999998753 67
Q ss_pred EEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCC-hHHHHHhhhcceeEEEEeCChhhHHHH
Q 007800 93 CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD-FTQELRCFQAITCSQAVVNNLGDAHEL 171 (589)
Q Consensus 93 ~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~tk~~~~v~~~~~~~~~ 171 (589)
|..+.|||++|++++.+-|..+++|+|+|-||.-.. +.+++-+|+.-+..| .....+.|+|++||..++++||++-..
T Consensus 87 ~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~-R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~sa 165 (617)
T COG3962 87 VTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFAT-RQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSA 165 (617)
T ss_pred EecccCCcHHHHHHHHHHHHhhcCceEeeccchhcc-cCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHHH
Confidence 788899999999999999999999999999997654 445544433221111 122357999999999999999999999
Q ss_pred HHHHHHHhHhc--CCcEEEEeCCCCCCCCCCCCCCCCC-CccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccch
Q 007800 172 IDTAISTALKE--SKPVYISISCNLPGIPHPTFARDPV-PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRV 248 (589)
Q Consensus 172 l~~A~~~a~~~--~gPV~i~iP~dv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~ 248 (589)
+.||++..+.+ .|||-|.+|.|++.+ ..+.+... .... .....+++++..++.++++|+++|||+||+|+|+.+
T Consensus 166 l~rA~~VmTDPA~~GpvTl~l~QDVq~e--A~Dyp~~FF~~rv-~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~Y 242 (617)
T COG3962 166 LPRAMRVMTDPADCGPVTLALCQDVQAE--AYDYPESFFEKRV-WRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLY 242 (617)
T ss_pred HHHHHHHhCChhhcCceEEEechhhhhh--hcCCcHHhhhhhh-hhccCCCCCHHHHHHHHHHHHhcCCCEEEecCceee
Confidence 99999999986 599999999999873 22111110 0000 001112346778999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccC-CC
Q 007800 249 AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI-KK 327 (589)
Q Consensus 249 ~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~ 327 (589)
+++.++|..|+|..|+||++|-.|||.++.|||+++|.. |..|...+|.+.++||+||.+|+|+.++.|..|..|. +.
T Consensus 243 S~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~v-GvTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~alF~~~~ 321 (617)
T COG3962 243 SGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGV-GVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNPG 321 (617)
T ss_pred chHHHHHHHHHHhcCCceEeccCCcccccccCccccccc-cccchHHHHhhhhhcCEEEEecccccccccccHHHhcCCC
Confidence 999999999999999999999999999999999999996 8899999999999999999999999999999988765 66
Q ss_pred CceEEEcCCceeecCCCccc-cccHHHHHHHHHHHhhcCchh--h-hhhhhhcCCC---C-CCCCCC--CCCCcCHHHHH
Q 007800 328 EKAIIVQPHRVTVGNGPSLG-WVFMADFLSALAKKLRKNTTA--L-ENYRRIYVPP---G-IPVKRA--QNEPLRVNVLF 397 (589)
Q Consensus 328 ~~~i~id~d~~~~~~~~~~~-~~~~~~~l~~L~~~l~~~~~~--~-~~~~~~~~~~---~-~~~~~~--~~~~i~~~~~~ 397 (589)
.|+|.+|..+.+..+...++ ..|++..|++|.+.|..-+.. | .+..+....+ . .+.... -+...+..+++
T Consensus 322 ~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~ptq~~vi 401 (617)
T COG3962 322 VKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLPTQTQVI 401 (617)
T ss_pred ceEEEeecccccccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccccccccccccCccchhHH
Confidence 78999998877654223333 248899999999998754331 1 1111111000 0 000011 11234567789
Q ss_pred HHHHhhCCCCCEEEecCCccccccccc-cccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHH
Q 007800 398 KHIQDMLSGDTAVIAETGDSWFNCQKL-RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEI 476 (589)
Q Consensus 398 ~~L~~~l~~~~iiv~d~G~~~~~~~~~-~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el 476 (589)
-.+++..+++++|++-.|+---....+ ....+.+|+.-+++++|||-++.++|+++|.|++.|++++|||||+|--.||
T Consensus 402 gav~~~~~~~svvvcAAGsLPGdLhkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~pdreV~vmVGDGSymMlnSEL 481 (617)
T COG3962 402 GAVQRTISDDSVVVCAAGSLPGDLHKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVYVMVGDGSYMMLNSEL 481 (617)
T ss_pred HHHHhhcCCCcEEEEeCCCCcHHHHHHhccCCCCceeeeecccccccccccccccccCCCCCeEEEEEcccchhhhhHHH
Confidence 999999999999999888643222222 2223445999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEeCCchhhhh--hhc-C-CCCC----------CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHH
Q 007800 477 STMIRCGQRSIIFLINNGGYTIEV--EIH-D-GPYN----------VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTE 542 (589)
Q Consensus 477 ~ta~~~~l~v~ivv~nN~~~~~~~--~~~-~-~~~~----------~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~ 542 (589)
.|++.+++.++++++||.|||... ++. + ..|+ .+.++||++.|++||+ +.++|.+.++|++
T Consensus 482 ~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga-----~~~kv~~i~eL~a 556 (617)
T COG3962 482 ATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGA-----KAYKVGTIEELEA 556 (617)
T ss_pred HHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCc-----eeEecCCHHHHHH
Confidence 999999999999999999999721 111 1 1221 2568999999999999 9999999999999
Q ss_pred HHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007800 543 AMKTATGEQKDSLCFIEVFVHKDDTSK 569 (589)
Q Consensus 543 al~~a~~~~~~gp~viev~~~~~~~~~ 569 (589)
+|+++.. ..+++||+|.++|...++
T Consensus 557 AL~~Ak~--~~~ttvi~I~t~P~~~t~ 581 (617)
T COG3962 557 ALADAKA--SDRTTVIVIDTDPKTTTD 581 (617)
T ss_pred HHHHHHh--CCCCEEEEEecCCccccC
Confidence 9999986 899999999999865544
No 59
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=2.1e-67 Score=562.22 Aligned_cols=411 Identities=19% Similarity=0.166 Sum_probs=328.9
Q ss_pred HHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHH
Q 007800 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNA 107 (589)
Q Consensus 29 ~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~ 107 (589)
.+++|++.|+++||+||||+||+++.+|++++.+.++|++|.++||++|+|||+||+|+||+ +||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 47999999999999999999999999999999655689999999999999999999999999 99999999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhh------HHHHHHHHHHHhHh
Q 007800 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAISTALK 181 (589)
Q Consensus 108 l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~------~~~~l~~A~~~a~~ 181 (589)
|++||.+++|||+|+|+++....+++. .|..||.++|+++|||+.++.++++ +++.|++|++.|.+
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~--------~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~ 153 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGA--------NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQG 153 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCC--------CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhC
Confidence 999999999999999999987655442 2345789999999999999999998 89999999999999
Q ss_pred c-CCcEEEEeCCCCCCCCCCCCCCCCC---CccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHH
Q 007800 182 E-SKPVYISISCNLPGIPHPTFARDPV---PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (589)
Q Consensus 182 ~-~gPV~i~iP~dv~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~ 257 (589)
+ ||||||+||.|++..+.+....... ............+.+..+++++++|.+||||+|++|.|+.++ +.++|.+
T Consensus 154 ~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~-a~~~l~~ 232 (432)
T TIGR00173 154 PPPGPVHINVPFREPLYPDPLLQPLQPWLRSGVPTVTTGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAE-DAEALAA 232 (432)
T ss_pred CCCCCEEEeCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHH-HHHHHHH
Confidence 5 7999999999996532211000000 000000011112345679999999999999999999999876 8999999
Q ss_pred HHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCc
Q 007800 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (589)
Q Consensus 258 lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~ 337 (589)
|+|++++||++|+++||.+ ++| +++|.+.+..+++.+++++ ++|+||+||+++++..+..| .+.++.++||||.|+
T Consensus 233 lae~~~~PV~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~-~~~~~~~~i~vd~d~ 308 (432)
T TIGR00173 233 LAEALGWPLLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQW-LARQPAEYWVVDPDP 308 (432)
T ss_pred HHHhCCCeEEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHH-HhCCCCcEEEECCCC
Confidence 9999999999999999999 789 9999875566777788888 99999999999988776666 233456899999999
Q ss_pred eeecCCCccc----cccHHHHHHHHHHHhhcCch-hhhhhhhhcCCCCC-CCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 007800 338 VTVGNGPSLG----WVFMADFLSALAKKLRKNTT-ALENYRRIYVPPGI-PVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (589)
Q Consensus 338 ~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv 411 (589)
..++ +.+.. ..|++.+|++|.+.++.... +...|.+....... ......+.++++.++++.|++.+|++.+|+
T Consensus 309 ~~~~-~~~~~~~~i~~D~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~lp~d~ivv 387 (432)
T TIGR00173 309 GWLD-PSHHATTRLEASPAEFAEALAGLLKNPDAAWLDRWLEAEAKAREALREVLAEEPLSELSLARALSQLLPEGAALF 387 (432)
T ss_pred CccC-CCCCceEEEEECHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhCCCCCeEE
Confidence 9886 33222 34899999999888754222 22233221100000 000112346999999999999999999999
Q ss_pred ecCCcccccccc-cccc-CCCeeEeccCccchhhHHHHHHHHhh
Q 007800 412 AETGDSWFNCQK-LRLP-ENCGYEFQMQYGSIGWSVGATLGYAQ 453 (589)
Q Consensus 412 ~d~G~~~~~~~~-~~~~-~~~~~~~~~~~g~mG~~l~~aiGaal 453 (589)
.|.|++..|... +... .+.++++++++|+||+++|+|||+++
T Consensus 388 ~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 388 VGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred EECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 999999877644 4443 46779999999999999999999986
No 60
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=6.7e-55 Score=448.08 Aligned_cols=524 Identities=19% Similarity=0.185 Sum_probs=397.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
...+..+++.|.++||++++-+|||+++||.-++.+.++|++....+|++|+|+|.|.|+.+++ .+++||||.+++|+.
T Consensus 8 t~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~ 87 (566)
T COG1165 8 TLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLY 87 (566)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhcc
Confidence 5678999999999999999999999999999999887899999999999999999999999999 899999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHH-------HHHHHHH
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHEL-------IDTAIST 178 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~-------l~~A~~~ 178 (589)
+++.||..+++|+||+|+|+|.+..+++ .+|+++|..||.++++|+..+..|+.-.++ -.+++..
T Consensus 88 PAViEA~~srvpLIVLTADRP~EL~~~G--------AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~ 159 (566)
T COG1165 88 PAVIEANLSRVPLIVLTADRPPELRGCG--------ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQ 159 (566)
T ss_pred HHHHhhhhcCCceEEEeCCCCHHHhcCC--------CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988876 367899999999999999999888754433 3344444
Q ss_pred hHhc-CCcEEEEeCCCCCCCCCCCCCCCCC-----CccC-----CCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccc
Q 007800 179 ALKE-SKPVYISISCNLPGIPHPTFARDPV-----PFFL-----APKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIR 247 (589)
Q Consensus 179 a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~ 247 (589)
|++. +|||||++|++.+..+.+... ... +... .+..... . ...+.+ . ....++|++||+|....
T Consensus 160 a~~~~~GpVHiN~PfrePL~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~-~-~~~~~~rgviv~G~~~~ 234 (566)
T COG1165 160 ARTPHAGPVHINVPFREPLVPDLEPE-GAGTPWGRPLGHWWFYTGPWTVDQ-G-PDLLSE-W-FFWRQKRGVIVAGRMSA 234 (566)
T ss_pred ccCCCCCceEecCCCCccCCCCCCcc-ccccccccccCchhhcCCceeeec-c-cccccc-h-hhhcccCceEEEecCch
Confidence 4445 799999999998764211110 010 0000 0000000 0 111222 2 23457999999998776
Q ss_pred hhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCC
Q 007800 248 VAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327 (589)
Q Consensus 248 ~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~ 327 (589)
. ..+.+.++++.+|+|+++.+.+. -++ ++..|+.++.++.+.+-+.. |+||.||+++.+.....|-.....
T Consensus 235 ~--e~~~i~~~a~~lg~PilaDplS~-----lr~-~i~~yD~~L~~~~~~~~L~~-d~VI~fG~~~~SK~l~qwl~~~~~ 305 (566)
T COG1165 235 Q--EGKGILALANTLGWPILADPLSP-----LRN-YIPCYDLWLANPKAAEKLRP-DIVIQFGSPPTSKRLLQWLADTEP 305 (566)
T ss_pred h--hhHHHHHHHHHhCCceecccccc-----cCC-CcccchhhhcCchhhhhcCc-cEEEEeCCCcccHHHHHHHhccCC
Confidence 5 55669999999999999988753 111 24555666666667666666 999999999888777777655555
Q ss_pred CceEEEcCCceeecC---CCccccccHHHHHHHHHHHhhcCchhhhhhhhhcCCC--CCCCCCCCCCCcCHHHHHHHHHh
Q 007800 328 EKAIIVQPHRVTVGN---GPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPP--GIPVKRAQNEPLRVNVLFKHIQD 402 (589)
Q Consensus 328 ~~~i~id~d~~~~~~---~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~L~~ 402 (589)
.+.+.||..+....+ .......++..+++.+......+..|..+|....... ...... .+..+...+++.+|.+
T Consensus 306 ~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~-~~~~~~e~~~a~~l~~ 384 (566)
T COG1165 306 IEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQL-AAEALTEAHLAAALAD 384 (566)
T ss_pred CcEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHHh-cccCchhhHHHHHHHH
Confidence 678888876554321 1122344677777665433332222333442110000 000001 1115788899999999
Q ss_pred hCCCCCEEEecCCccccccccc-cccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHH
Q 007800 403 MLSGDTAVIAETGDSWFNCQKL-RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIR 481 (589)
Q Consensus 403 ~l~~~~iiv~d~G~~~~~~~~~-~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~ 481 (589)
.+|+++.++....+..++...+ ..+++.+.++|+|.++|.+.+++|+|++.+. .+|+|+++||.||+|+++.|....+
T Consensus 385 ~lp~~~~LFvgNSmpVRdvd~~~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-~~ptv~liGDLS~lhD~NgLl~~k~ 463 (566)
T COG1165 385 LLPPQDQLFVGNSMPVRDVDALGQLPAGYRVYSNRGASGIDGTVSTALGIARAT-QKPTVALIGDLSFLHDLNGLLLLKK 463 (566)
T ss_pred hCCCCCeEEEecCchhhhHHHhccCccCceeecCCCccccchhHHHHhhhhhhc-CCceEEEEechhhhhccchHhhcCC
Confidence 9999999996655555655443 3447788999999999999999999999985 6789999999999999999999888
Q ss_pred hCCCeEEEEEeCCchhhhhhhc--------CCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCC
Q 007800 482 CGQRSIIFLINNGGYTIEVEIH--------DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKD 553 (589)
Q Consensus 482 ~~l~v~ivv~nN~~~~~~~~~~--------~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~ 553 (589)
...|++|||+||+|.||+..+. ++.|...+..||+.+|+.||. ++.++.+.+||+++++.+.. ..
T Consensus 464 ~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~tPh~ldF~~la~~y~l-----~y~~~~s~~~l~~~~~~~~~--~~ 536 (566)
T COG1165 464 VPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGTPHGLDFAHLAATYGL-----EYHRPQSWDELGEALDQAWR--RS 536 (566)
T ss_pred CCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCCCCCCCHHHHHHHhCc-----cccccCcHHHHHHHHhhhcc--CC
Confidence 9999999999999999943322 123444578999999999999 99999999999999999986 78
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhhhh
Q 007800 554 SLCFIEVFVHKDDTSKELLEWGSRVSAA 581 (589)
Q Consensus 554 gp~viev~~~~~~~~~~~~~~~~~~~~~ 581 (589)
|..||||++++++.....+.+..++...
T Consensus 537 g~~viEvkt~r~~~~~~~q~l~~~~~~~ 564 (566)
T COG1165 537 GTTVIEVKTDRSDGAQLHQALLAQVSHA 564 (566)
T ss_pred CcEEEEEecChhHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999887653
No 61
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=3.5e-40 Score=304.13 Aligned_cols=161 Identities=25% Similarity=0.393 Sum_probs=149.6
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHH
Q 007800 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLN 106 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~ 106 (589)
+++++|++.|+++||++|||+||+++.+|++++.++++|++|.+|||++|++||+||+|++|+ +||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 578999999999999999999999999999999765689999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcE
Q 007800 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (589)
Q Consensus 107 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (589)
|+++||.+++|||+|+|+.+....+++ .++ ..||.++++++|||+.++++++++++.+++|++.|.+++|||
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~-----~~q---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV 152 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTD-----YFQ---EVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVA 152 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCC-----CCc---ccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 999999999999999999998755443 122 347899999999999999999999999999999999988999
Q ss_pred EEEeCCCCCC
Q 007800 187 YISISCNLPG 196 (589)
Q Consensus 187 ~i~iP~dv~~ 196 (589)
||+||.|++.
T Consensus 153 ~l~iP~dv~~ 162 (164)
T cd07039 153 VLILPGDVQD 162 (164)
T ss_pred EEEeChHHhc
Confidence 9999999975
No 62
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=100.00 E-value=2.1e-38 Score=291.94 Aligned_cols=162 Identities=52% Similarity=0.867 Sum_probs=148.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHH
Q 007800 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 110 (589)
Q Consensus 31 ~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~ 110 (589)
|+|++.|+++||+||||+||+.+.+|++++.+.++|++|.++||++|++||+||+|+|+.+||++|+|||++|+++||++
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~~ 80 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIAG 80 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHHH
Confidence 57999999999999999999999999999976568999999999999999999999993399999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEe
Q 007800 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (589)
Q Consensus 111 A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~i 190 (589)
|+.+++|||+|+|+.+....+++.++|+..+..++.||.++++++|||+.++.+++++++.+++|++.|.+++|||||+|
T Consensus 81 A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 81 AYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 99999999999999998877776666655533344468999999999999999999999999999999999889999999
Q ss_pred CC
Q 007800 191 SC 192 (589)
Q Consensus 191 P~ 192 (589)
|.
T Consensus 161 P~ 162 (162)
T cd07038 161 PR 162 (162)
T ss_pred cC
Confidence 95
No 63
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=100.00 E-value=1.1e-35 Score=328.60 Aligned_cols=490 Identities=16% Similarity=0.091 Sum_probs=314.0
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC---CCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcc
Q 007800 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (589)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG 100 (589)
+..++|+++++..+.+.|++.++|+||++.+++++.|.+. .++.+++..+|.+|..||.|.+.+ |.-++..|+|||
T Consensus 2 ~~~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~a-G~ra~t~ts~~G 80 (595)
T TIGR03336 2 KELLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWS-GLRAFCTMKHVG 80 (595)
T ss_pred ceeecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhc-CcceEEEccCCc
Confidence 3468999999999999999999999999999999998753 368999999999999999996665 554455588999
Q ss_pred hHHHHHHHHHhh--hcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHHHHH
Q 007800 101 GLSVLNAIAGAY--SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAIS 177 (589)
Q Consensus 101 ~~n~~~~l~~A~--~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~ 177 (589)
+.-+.-.+..+. --+.|++++.+++|.... +..+ ++-.++.-.+.| .....+++++.+...+||+
T Consensus 81 l~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~--------~~~~----q~d~~~~~~~~~~vl~p~~~qE~~d~~~~Af~ 148 (595)
T TIGR03336 81 LNVAADPLMTLAYTGVKGGLVVVVADDPSMHS--------SQNE----QDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFE 148 (595)
T ss_pred hhhhHHHhhhhhhhcCcCceEEEEccCCCCcc--------chhh----HhHHHHHHhcCCeEECCCCHHHHHHHHHHHHH
Confidence 866666665544 236779999998766521 1111 111122222343 4456788999999999999
Q ss_pred HhHhcCCcEEEEeCCCCCCCCCCCCCCC--CCC----ccCCCCCCC--hh---h----HHHHHHHHHHHHHhcCCC----
Q 007800 178 TALKESKPVYISISCNLPGIPHPTFARD--PVP----FFLAPKVSN--QL---G----LEAAVEATADFLNKAVKP---- 238 (589)
Q Consensus 178 ~a~~~~gPV~i~iP~dv~~~~~~~~~~~--~~~----~~~~~~~~~--~~---~----~~~~i~~~~~~L~~a~rp---- 238 (589)
+|...+-||.+..-..+.+..+++...+ ..+ +...+.... ++ . ..+.++++.+...+.+..
T Consensus 149 lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (595)
T TIGR03336 149 LSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEI 228 (595)
T ss_pred HHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceecc
Confidence 9999899999999876665433322111 000 000000000 00 0 112222222222221111
Q ss_pred ----EEEeCcccchhhHHHHHHHHHHHhCC--ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCC
Q 007800 239 ----VLVGGPNIRVAKAQKAFIELADATGY--PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI 312 (589)
Q Consensus 239 ----viv~G~g~~~~~~~~~l~~lae~~~~--Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~ 312 (589)
+.++..|.....+.+.+. ++|+ .|+. +..-.|+ ......+++++.+.||++...
T Consensus 229 ~~~di~iv~~G~~~~~a~ea~~----~~Gi~~~v~~-------~~~i~Pl---------d~~~i~~~~~~~~~vivvEe~ 288 (595)
T TIGR03336 229 NGAKIGVIASGIAYNYVKEALE----RLGVDVSVLK-------IGFTYPV---------PEGLVEEFLSGVEEVLVVEEL 288 (595)
T ss_pred CCCCEEEEEcCHHHHHHHHHHH----HcCCCeEEEE-------eCCCCCC---------CHHHHHHHHhcCCeEEEEeCC
Confidence 455555554333334333 3353 2321 1112232 334567888999999999754
Q ss_pred cCCcccccccccCC--CCceEEEcCCceeecCCCccccccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCC
Q 007800 313 FNDYSSVGYSLLIK--KEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEP 390 (589)
Q Consensus 313 ~~~~~~~~~~~~~~--~~~~i~id~d~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (589)
...... ....+.. +.++..+-.....+ .....+|.+.+.+.|.+. ...+.... .+........+.+.-...
T Consensus 289 ~~~~~~-~~~~~~~~~~~~v~~~G~~d~fi---~~~~~Ld~~~i~~~i~~~-~~~~~~~~--~~~~~~~~~~r~~~~C~G 361 (595)
T TIGR03336 289 EPVVEE-QVKALAGTAGLNIKVHGKEDGFL---PREGELNPDIVVNALAKF-GLAPSVTH--EKPVPKPLPVRPPSLCAG 361 (595)
T ss_pred ccHHHH-HHHHHHHhcCCCeEEecccCCcc---CcccCcCHHHHHHHHHHh-CCCccccc--ccccccccCCCCCCCCCC
Confidence 311000 0000111 11233332221111 223346777888877553 21111000 000000111222333456
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhc
Q 007800 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ 470 (589)
Q Consensus 391 i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~ 470 (589)
|.++.++++|++.++++.+++.|+|++..|... |. .++.+ +++||+++|+|+|++++.|+++||+++|||+|+
T Consensus 362 Cp~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~---p~--~~~~~--~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~f~ 434 (595)
T TIGR03336 362 CPHRATFYAMKKVADREAIFPSDIGCYTLGIQP---PL--GTVDT--TLCMGASIGVASGLSKAGEKQRIVAFIGDSTFF 434 (595)
T ss_pred CCChHHHHHHHHhccCCcEEecCcchhhccccC---Cc--cccce--eeccCchHHHHhhhhhcCCCCCEEEEeccchhh
Confidence 888999999999999999999999999776421 11 23322 589999999999999999999999999999999
Q ss_pred cc-HHHHHHHHHhCCCeEEEEEeCCchhhhhhh-cCC-CC----CCCCCCChHHHHHHccCCCCCccEEEeCCH---HHH
Q 007800 471 VT-AQEISTMIRCGQRSIIFLINNGGYTIEVEI-HDG-PY----NVIKNWDYTGLVNAIHNGEGKCWTAKVRSE---DEL 540 (589)
Q Consensus 471 ~~-~~el~ta~~~~l~v~ivv~nN~~~~~~~~~-~~~-~~----~~~~~~d~~~la~a~G~~~~~~~~~~v~~~---~~l 540 (589)
|+ ++||+|++++++|+++||+||++|++.... ... .+ ....++||+++|++||+ ++.+|.++ +++
T Consensus 435 ~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~-----~~~~v~~~~~l~~l 509 (595)
T TIGR03336 435 HTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGV-----EFVEVVDPLNVKET 509 (595)
T ss_pred hcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCC-----CEEEEeCcCCHHHH
Confidence 97 999999999999999999999999983211 111 11 12357899999999999 89999877 556
Q ss_pred HHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 541 TEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 541 ~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
.++|+++++ .+||.||++..++...
T Consensus 510 ~~al~~a~~--~~gp~li~v~~~C~l~ 534 (595)
T TIGR03336 510 IEVFKAALA--AEGVSVIIAKQPCVLS 534 (595)
T ss_pred HHHHHHHHh--cCCCEEEEEcccCccc
Confidence 889999986 7899999999887653
No 64
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=2.3e-38 Score=289.48 Aligned_cols=153 Identities=23% Similarity=0.280 Sum_probs=141.7
Q ss_pred HHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHHH
Q 007800 32 HLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAG 110 (589)
Q Consensus 32 ~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~~ 110 (589)
+|++.|+++||++|||+||+++.+|++++.+++++++|.+|||++|+|||+||+|+||+ +||++|+|||++|+++|+++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 68999999999999999999999999999766789999999999999999999999999 99999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhh------HHHHHHHHHHHhHhc-C
Q 007800 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAISTALKE-S 183 (589)
Q Consensus 111 A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~------~~~~l~~A~~~a~~~-~ 183 (589)
|+.+++|||+|+|+.+....+++ .+ |..||..+++++|||+.+++++++ +++.+++|++.|.++ |
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~ 153 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTG-----AN---QTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPP 153 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCC-----CC---cccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999988754443 22 235788999999999999999999 999999999999996 7
Q ss_pred CcEEEEeCC
Q 007800 184 KPVYISISC 192 (589)
Q Consensus 184 gPV~i~iP~ 192 (589)
|||||+||.
T Consensus 154 GPv~l~iP~ 162 (162)
T cd07037 154 GPVHLNLPF 162 (162)
T ss_pred CCEEEeccC
Confidence 999999995
No 65
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=100.00 E-value=8.1e-35 Score=299.00 Aligned_cols=330 Identities=22% Similarity=0.231 Sum_probs=241.9
Q ss_pred CCCEEEecCCcchHHHHHhhh-cCCCCeEEecCchhHHHHhhhhhhhccCc--eEEEEeCCcc-hHHHHHHHHHhhhcCC
Q 007800 41 GAKDVFSVPGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYARSRGV--GACVVTFTVG-GLSVLNAIAGAYSENL 116 (589)
Q Consensus 41 GV~~vfg~pG~~~~~l~~al~-~~~~i~~v~~~hE~~A~~~A~gyar~tg~--~v~~~t~GpG-~~n~~~~l~~A~~~~~ 116 (589)
||++++|+|.+...++++.+. +++.+++|.+.||..|+.+|.||+..||+ .|.|..||.| +.|.++.|++....++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 799999999999999999998 45689999999999999999999999886 5666888888 6677777777788999
Q ss_pred cEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEe-CChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 007800 117 PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVV-NNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (589)
Q Consensus 117 PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v-~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (589)
|+|+|.|.+...... ++..|..+|. -...+++.+---...+ .+.+++...|++|++.+.+...|+.|-++.+..
T Consensus 81 P~l~~i~~RG~~g~~-depqh~~~G~----~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 81 PLLLIVGWRGEPGVH-DEPQHVKQGR----ITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CeeEEEecCCCCCCC-CCchhhHHhH----HHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 999999998765222 2222222221 1133444332222233 345556666666666666655666666665543
Q ss_pred CCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccC
Q 007800 196 GIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGL 275 (589)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~ 275 (589)
.. . .. + +
T Consensus 156 ~~---~-------------~~-----~--------------~-------------------------------------- 162 (361)
T TIGR03297 156 AS---Y-------------KL-----K--------------G-------------------------------------- 162 (361)
T ss_pred cc---c-------------cc-----c--------------c--------------------------------------
Confidence 20 0 00 0 0
Q ss_pred CCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCccccccHHHHH
Q 007800 276 VPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFL 355 (589)
Q Consensus 276 ~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~~~~~~l 355 (589)
+ . .+.
T Consensus 163 ---------------------------------------------~-------------------~-~~~---------- 167 (361)
T TIGR03297 163 ---------------------------------------------E-------------------P-ANP---------- 167 (361)
T ss_pred ---------------------------------------------C-------------------C-CCC----------
Confidence 0 0 000
Q ss_pred HHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccccccc---C-CCe
Q 007800 356 SALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLP---E-NCG 431 (589)
Q Consensus 356 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~---~-~~~ 431 (589)
....+++.++++.+.+.++++++|++|+|+.....+.+... . +..
T Consensus 168 -------------------------------~~~~~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~ 216 (361)
T TIGR03297 168 -------------------------------LPTLMTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARD 216 (361)
T ss_pred -------------------------------CcCCCCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCc
Confidence 00026778889999999999999999999865432222111 1 233
Q ss_pred eEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCC-CeEEEEEeCCchhhhhhhcCCCCCCC
Q 007800 432 YEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQ-RSIIFLINNGGYTIEVEIHDGPYNVI 510 (589)
Q Consensus 432 ~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l-~v~ivv~nN~~~~~~~~~~~~~~~~~ 510 (589)
|+. +|+||+++|+|+|++++.|+++||+++|||+|+|+++||.|++++++ |+++||+||++|++. .+..+..
T Consensus 217 f~~---~GsMG~a~p~AlG~ala~p~r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~----g~q~~~~ 289 (361)
T TIGR03297 217 FLT---VGSMGHASQIALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAHDSV----GGQPTVS 289 (361)
T ss_pred eEe---echhhhHHHHHHHHHHHCCCCCEEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcCcccccc----CCcCCCC
Confidence 554 49999999999999999999999999999999999999999999986 999999999999862 1122222
Q ss_pred CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 511 KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 511 ~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
.++||.++|++||+. ++++|++.++|+++++++.. .+||.||||++++...
T Consensus 290 ~~~d~~~iA~a~G~~----~~~~v~~~~eL~~al~~a~~--~~gp~lIeV~v~~g~~ 340 (361)
T TIGR03297 290 QHLDFAQIAKACGYA----KVYEVSTLEELETALTAASS--ANGPRLIEVKVRPGSR 340 (361)
T ss_pred CCCCHHHHHHHCCCc----eEEEeCCHHHHHHHHHHHHh--CCCcEEEEEEecCCCc
Confidence 578999999999962 57899999999999999986 7899999999998653
No 66
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=100.00 E-value=5.8e-37 Score=286.45 Aligned_cols=164 Identities=32% Similarity=0.462 Sum_probs=147.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
||++|+|++.|+++||++|||+||+.+.+|+++|.+++++++|.++||.+|++||+||+|++|+ +||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 6899999999999999999999999999999999987689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHh-cCC
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESK 184 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~-~~g 184 (589)
++|++|+.+++|||+|+|+++....+++ .++ +..||..++++++||++++.+++++++.+++|++.|.. ++|
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~q--~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~g 153 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRG-----AFQ--QEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPG 153 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTT-----STT--SSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTS
T ss_pred HHHhhcccceeeEEEEecccchhhhccc-----ccc--cchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999999999998866543 222 24589999999999999999999999999999999965 489
Q ss_pred cEEEEeCCCCCCC
Q 007800 185 PVYISISCNLPGI 197 (589)
Q Consensus 185 PV~i~iP~dv~~~ 197 (589)
||||+||.|++..
T Consensus 154 Pv~l~ip~dv~~~ 166 (172)
T PF02776_consen 154 PVYLEIPQDVQEA 166 (172)
T ss_dssp EEEEEEEHHHHTS
T ss_pred cEEEEcChhHhhC
Confidence 9999999999773
No 67
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=100.00 E-value=1.4e-34 Score=275.68 Aligned_cols=182 Identities=16% Similarity=0.283 Sum_probs=156.8
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch
Q 007800 389 EPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG 467 (589)
Q Consensus 389 ~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG 467 (589)
.++++.++++.|++.+++++++++|+|++..|. .++..+++.+|+.+.++++||+++|+|||+++|.|+++|||++|||
T Consensus 2 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG 81 (196)
T cd02013 2 NPMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDG 81 (196)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcch
Confidence 368899999999999999999999999987654 4566666777999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcCCCC--CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHH
Q 007800 468 SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVE----IHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELT 541 (589)
Q Consensus 468 sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~----~~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~ 541 (589)
+|+|+++||+|+++|++|+++||+||++|++.+. .++..+ .+++++||.++|++||+ ++++|+++++|+
T Consensus 82 ~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~ 156 (196)
T cd02013 82 AWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGA-----KGITVDKPEDVG 156 (196)
T ss_pred HHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCC-----EEEEECCHHHHH
Confidence 9999999999999999999999999999998321 122222 34567999999999999 999999999999
Q ss_pred HHHHHhhh-cCCCCeEEEEEEcCCCCChHHHHHHH
Q 007800 542 EAMKTATG-EQKDSLCFIEVFVHKDDTSKELLEWG 575 (589)
Q Consensus 542 ~al~~a~~-~~~~gp~viev~~~~~~~~~~~~~~~ 575 (589)
++|+++++ .+.++|+||||.+++...++..+.+.
T Consensus 157 ~al~~a~~~~~~~~p~liev~v~~~~~~~~~~~~~ 191 (196)
T cd02013 157 PALQKAIAMMAEGKTTVIEIVCDQELGDPFRRDAL 191 (196)
T ss_pred HHHHHHHhcCCCCCeEEEEEEeCcccCCchHHHhh
Confidence 99999985 23689999999999988765554443
No 68
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=100.00 E-value=4.9e-34 Score=273.57 Aligned_cols=176 Identities=20% Similarity=0.262 Sum_probs=151.3
Q ss_pred CCCcCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcc
Q 007800 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD 466 (589)
Q Consensus 388 ~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GD 466 (589)
+.++++..++++|++.+|+++++++|+|++..|. .++..+++.+++.+.++|+|||++|+|||+++|+|+++||+|+||
T Consensus 5 ~~~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GD 84 (202)
T cd02006 5 DVPIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGD 84 (202)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeC
Confidence 3479999999999999999999999999987653 456666667799888999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcCCC-----CCC-------CCCCChHHHHHHccCCCCCcc
Q 007800 467 GSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVE----IHDGP-----YNV-------IKNWDYTGLVNAIHNGEGKCW 530 (589)
Q Consensus 467 Gsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~----~~~~~-----~~~-------~~~~d~~~la~a~G~~~~~~~ 530 (589)
|+|+|+++||+|+++|++|+++||+||++|++.++ .+... +.. .+++||.++|++||+ +
T Consensus 85 G~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~ 159 (202)
T cd02006 85 YDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGC-----K 159 (202)
T ss_pred hHhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCC-----E
Confidence 99999999999999999999999999999998322 11111 111 136899999999999 9
Q ss_pred EEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcCCCCCh
Q 007800 531 TAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 531 ~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~~~~~~ 568 (589)
+.+|++++||+++|+++++ ...++|.||||.+++.+..
T Consensus 160 ~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~~~~~~ 199 (202)
T cd02006 160 AIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILERVTNI 199 (202)
T ss_pred EEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEecccccC
Confidence 9999999999999999984 1268999999999987753
No 69
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=100.00 E-value=7.3e-33 Score=259.26 Aligned_cols=168 Identities=17% Similarity=0.258 Sum_probs=147.0
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT 472 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~ 472 (589)
.+++++|++.+++++++++|+|++..|. .++...++.+++.+.++|+|||++|+|+|++++.|+++||+|+|||+|+|+
T Consensus 2 ~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~ 81 (177)
T cd02010 2 QRIVHDLRAVMGDDDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMN 81 (177)
T ss_pred HHHHHHHHHHCCCCcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhH
Confidence 5689999999999999999999987654 345555666799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcC-CCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHh
Q 007800 473 AQEISTMIRCGQRSIIFLINNGGYTIEVE----IHD-GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTA 547 (589)
Q Consensus 473 ~~el~ta~~~~l~v~ivv~nN~~~~~~~~----~~~-~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a 547 (589)
++||+|++++++|+++||+||++|++.+. .+. ..+.++.++||.++|++||+ ++.+|+++++|+++|+++
T Consensus 82 ~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a 156 (177)
T cd02010 82 SQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGA-----KGYRIESADDLLPVLERA 156 (177)
T ss_pred HHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHHH
Confidence 99999999999999999999999998321 111 13344567899999999999 999999999999999999
Q ss_pred hhcCCCCeEEEEEEcCCCCCh
Q 007800 548 TGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 548 ~~~~~~gp~viev~~~~~~~~ 568 (589)
++ .++|.||||.+++...+
T Consensus 157 ~~--~~~p~liev~~~~~~~~ 175 (177)
T cd02010 157 LA--ADGVHVIDCPVDYSENI 175 (177)
T ss_pred Hh--CCCCEEEEEEecccccC
Confidence 97 89999999999876543
No 70
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=100.00 E-value=8.5e-33 Score=260.25 Aligned_cols=176 Identities=49% Similarity=0.773 Sum_probs=154.8
Q ss_pred CcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhh
Q 007800 390 PLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (589)
Q Consensus 390 ~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf 469 (589)
|++++.+++.|++.++++.+++.|+|++.+...++...++.+++.+.++|+||+++|+|+|++++.|+++|++++|||+|
T Consensus 1 ~l~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f 80 (183)
T cd02005 1 PLTQARLWQQVQNFLKPNDILVAETGTSWFGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSF 80 (183)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEECCchHHHhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchh
Confidence 57899999999999999999999999986544556666667799999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcC--CCCCCCCCCChHHHHHHcc----CCCCCccEEEeCCHHHHHHH
Q 007800 470 QVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHD--GPYNVIKNWDYTGLVNAIH----NGEGKCWTAKVRSEDELTEA 543 (589)
Q Consensus 470 ~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~--~~~~~~~~~d~~~la~a~G----~~~~~~~~~~v~~~~~l~~a 543 (589)
+|+++||+|++++++|+++||+||++|++.+..+. ..+..+.++||.++|++|| + ++.+|++.+||+++
T Consensus 81 ~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~-----~~~~v~~~~el~~a 155 (183)
T cd02005 81 QMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGG-----LSFRVKTEGELDEA 155 (183)
T ss_pred hccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccc-----cEEEecCHHHHHHH
Confidence 99999999999999999999999999998432222 2345556799999999999 6 89999999999999
Q ss_pred HHHhhhcCCCCeEEEEEEcCCCCChHHH
Q 007800 544 MKTATGEQKDSLCFIEVFVHKDDTSKEL 571 (589)
Q Consensus 544 l~~a~~~~~~gp~viev~~~~~~~~~~~ 571 (589)
|+++++ ..++|.||||.+++++.++.|
T Consensus 156 l~~a~~-~~~~p~liev~~~~~~~~~~~ 182 (183)
T cd02005 156 LKDALF-NRDKLSLIEVILPKDDAPEAL 182 (183)
T ss_pred HHHHHh-cCCCcEEEEEEcCcccCCccc
Confidence 999984 357999999999999888655
No 71
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=100.00 E-value=2.3e-32 Score=258.75 Aligned_cols=171 Identities=26% Similarity=0.398 Sum_probs=149.3
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhh
Q 007800 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (589)
Q Consensus 391 i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf 469 (589)
+++..++++|++.+++++++++|+|++..|. .++..+++.+|+.+.++++||+++|+|+|++++.|+++||+++|||+|
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f 80 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSF 80 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHH
Confidence 4678899999999999999999999976554 456666677799999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhhhhhh----cCCCCC--C-CCCCChHHHHHHccCCCCCccEEEeCCHHHHHH
Q 007800 470 QVTAQEISTMIRCGQRSIIFLINNGGYTIEVEI----HDGPYN--V-IKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTE 542 (589)
Q Consensus 470 ~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~----~~~~~~--~-~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~ 542 (589)
+|+++||+|++++++|+++||+||++|++.+.. +.+.+. . .+++||.++|++||+ ++.+|++.++|++
T Consensus 81 ~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~ 155 (186)
T cd02015 81 QMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGI-----KGLRVEKPEELEA 155 (186)
T ss_pred hccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCC-----ceEEeCCHHHHHH
Confidence 999999999999999999999999999983321 222222 2 257899999999999 9999999999999
Q ss_pred HHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 543 AMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 543 al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
+|+++++ .++|+||||.+++++.+
T Consensus 156 al~~a~~--~~~p~liev~~~~~~~~ 179 (186)
T cd02015 156 ALKEALA--SDGPVLLDVLVDPEENV 179 (186)
T ss_pred HHHHHHh--CCCCEEEEEEeCCCccc
Confidence 9999986 89999999999986654
No 72
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=100.00 E-value=1e-32 Score=264.71 Aligned_cols=172 Identities=22% Similarity=0.373 Sum_probs=148.1
Q ss_pred HHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccH
Q 007800 395 VLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTA 473 (589)
Q Consensus 395 ~~~~~L~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~ 473 (589)
+++++|++.+++++++++|+|++..|.. ++...++.+++.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+.
T Consensus 3 ~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~ 82 (205)
T cd02003 3 EVLGALNEAIGDDDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH 82 (205)
T ss_pred hHHHHHHHhCCCCCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH
Confidence 5789999999999999999999877653 455556667999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEeCCchhhhhhhc----CCC----C-----------CCCCCCChHHHHHHccCCCCCccEEEe
Q 007800 474 QEISTMIRCGQRSIIFLINNGGYTIEVEIH----DGP----Y-----------NVIKNWDYTGLVNAIHNGEGKCWTAKV 534 (589)
Q Consensus 474 ~el~ta~~~~l~v~ivv~nN~~~~~~~~~~----~~~----~-----------~~~~~~d~~~la~a~G~~~~~~~~~~v 534 (589)
+||+|+++|++|+++||+||++|++.+..+ ... + ...+++||.++|++||+ ++.+|
T Consensus 83 ~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v 157 (205)
T cd02003 83 SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGA-----RVEKV 157 (205)
T ss_pred HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCC-----EEEEE
Confidence 999999999999999999999999833211 111 1 11356899999999999 99999
Q ss_pred CCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHH
Q 007800 535 RSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLE 573 (589)
Q Consensus 535 ~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~ 573 (589)
+++++|+++|+++++ .++|.||||.+++.+..+....
T Consensus 158 ~~~~el~~al~~a~~--~~gp~lIeV~v~~~~~~~~~~~ 194 (205)
T cd02003 158 KTIEELKAALAKAKA--SDRTTVIVIKTDPKSMTPGYGS 194 (205)
T ss_pred CCHHHHHHHHHHHHh--CCCCEEEEEEeeccccCCCCCC
Confidence 999999999999986 8999999999998876654433
No 73
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=99.98 E-value=6.8e-32 Score=248.27 Aligned_cols=153 Identities=28% Similarity=0.382 Sum_probs=141.5
Q ss_pred HHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHH
Q 007800 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIA 109 (589)
Q Consensus 31 ~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~ 109 (589)
|+|++.|+++||+++||+||+.+.++++++. ++++++|.++||.+|++||+||+|++|+ +||++|+|||++|+++++.
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~-~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~ 79 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALA-RSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA 79 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH
Confidence 5799999999999999999999999999998 4689999999999999999999999998 9999999999999999999
Q ss_pred HhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-CCcEEE
Q 007800 110 GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPVYI 188 (589)
Q Consensus 110 ~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~gPV~i 188 (589)
+|+.+++|||+|+|+++....+++. + +..||..++++++||+.++.+++++.+.+++|++.|.++ +|||||
T Consensus 80 ~A~~~~~Pll~i~~~~~~~~~~~~~-----~---q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l 151 (155)
T cd07035 80 NAYLDSIPLLVITGQRPTAGEGRGA-----F---QEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVAL 151 (155)
T ss_pred HHHhhCCCEEEEeCCCccccccCCc-----c---cccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999987555431 2 235788999999999999999999999999999999987 799999
Q ss_pred EeCC
Q 007800 189 SISC 192 (589)
Q Consensus 189 ~iP~ 192 (589)
+||.
T Consensus 152 ~ip~ 155 (155)
T cd07035 152 DLPK 155 (155)
T ss_pred EecC
Confidence 9984
No 74
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.97 E-value=2.8e-31 Score=249.44 Aligned_cols=172 Identities=18% Similarity=0.260 Sum_probs=150.7
Q ss_pred CcCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchh
Q 007800 390 PLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS 468 (589)
Q Consensus 390 ~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGs 468 (589)
++++..++++|++.++++.++++|+|++..+. .++..+++.+++.+.++|+||+++|+|+|++++.++++||+++|||+
T Consensus 1 ~~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~ 80 (178)
T cd02014 1 PIHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGG 80 (178)
T ss_pred CCCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchH
Confidence 36789999999999999999999999987553 45666667779999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcCCC-CCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHH
Q 007800 469 FQVTAQEISTMIRCGQRSIIFLINNGGYTIEVE----IHDGP-YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEA 543 (589)
Q Consensus 469 f~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~----~~~~~-~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~a 543 (589)
|+|+++||+|++++++|+++||+||++|++.+. ..... .++++++||.++|++||+ ++.+++++++|+++
T Consensus 81 f~~~~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~~ 155 (178)
T cd02014 81 FAMLMGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGI-----KGIRVEDPDELEAA 155 (178)
T ss_pred HHhhHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHH
Confidence 999999999999999999999999999998321 11122 234567899999999999 89999999999999
Q ss_pred HHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 544 MKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 544 l~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
|+++++ .++|+||||.+++++.+
T Consensus 156 l~~a~~--~~~p~liev~~~~~~~~ 178 (178)
T cd02014 156 LDEALA--ADGPVVIDVVTDPNEPP 178 (178)
T ss_pred HHHHHh--CCCCEEEEEEeCCCCCC
Confidence 999986 78999999999987653
No 75
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.97 E-value=9.7e-32 Score=251.51 Aligned_cols=164 Identities=21% Similarity=0.168 Sum_probs=142.4
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCccccccc-cccc-cCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhh
Q 007800 392 RVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRL-PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (589)
Q Consensus 392 ~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~-~~~~-~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf 469 (589)
+...++++|++.+|++.+++.|.|++..|.. ++.. .++.+++.+.++++||+++|+|||++++. +++||+++|||+|
T Consensus 2 ~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDGsf 80 (175)
T cd02009 2 TEPALARALPDHLPEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-DKPTVLLTGDLSF 80 (175)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC-CCCEEEEEehHHH
Confidence 3456899999999999999999999987754 4555 56677999999999999999999999998 9999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc----CCCCCC-C---CCCChHHHHHHccCCCCCccEEEeCCHHHHH
Q 007800 470 QVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH----DGPYNV-I---KNWDYTGLVNAIHNGEGKCWTAKVRSEDELT 541 (589)
Q Consensus 470 ~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~----~~~~~~-~---~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~ 541 (589)
+|+++||+|++++++|+++||+||++|++.+... ...+.. . .++||.++|++||+ ++.+|++++||+
T Consensus 81 ~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~ 155 (175)
T cd02009 81 LHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGL-----EYRRVSSLDELE 155 (175)
T ss_pred HHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCC-----CeeeCCCHHHHH
Confidence 9999999999999999999999999999832211 112211 1 37899999999999 999999999999
Q ss_pred HHHHHhhhcCCCCeEEEEEEcC
Q 007800 542 EAMKTATGEQKDSLCFIEVFVH 563 (589)
Q Consensus 542 ~al~~a~~~~~~gp~viev~~~ 563 (589)
++|+++++ .++|.||||.++
T Consensus 156 ~al~~a~~--~~~p~lIev~v~ 175 (175)
T cd02009 156 QALESALA--QDGPHVIEVKTD 175 (175)
T ss_pred HHHHHHHh--CCCCEEEEEeCC
Confidence 99999986 899999999985
No 76
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.97 E-value=5.3e-31 Score=246.45 Aligned_cols=164 Identities=23% Similarity=0.340 Sum_probs=142.9
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcc
Q 007800 393 VNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQV 471 (589)
Q Consensus 393 ~~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~ 471 (589)
|.+++++|++.+|++.++++|+|++..|. .++..+++.+++.+.++|+||+++|+|+|++++.|+++|++++|||+|+|
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~ 80 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGF 80 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcC
Confidence 35689999999999999999999886554 44555666679999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcC-----C--CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHH
Q 007800 472 TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHD-----G--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAM 544 (589)
Q Consensus 472 ~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~-----~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al 544 (589)
+.+||+|++++++|+++||+||++|++.+..+. . ....++++||.++|++||+ ++.+|++.++|+++|
T Consensus 81 ~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al 155 (172)
T cd02004 81 SGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGG-----KGELVTTPEELKPAL 155 (172)
T ss_pred CHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHH
Confidence 999999999999999999999999998322111 1 1234567999999999999 999999999999999
Q ss_pred HHhhhcCCCCeEEEEEEcC
Q 007800 545 KTATGEQKDSLCFIEVFVH 563 (589)
Q Consensus 545 ~~a~~~~~~gp~viev~~~ 563 (589)
+++++ .++|+||||+++
T Consensus 156 ~~a~~--~~~p~liev~i~ 172 (172)
T cd02004 156 KRALA--SGKPALINVIID 172 (172)
T ss_pred HHHHH--cCCCEEEEEEcC
Confidence 99986 789999999985
No 77
>PRK06163 hypothetical protein; Provisional
Probab=99.97 E-value=7.6e-30 Score=241.93 Aligned_cols=162 Identities=21% Similarity=0.249 Sum_probs=137.8
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCccc--cccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcc
Q 007800 389 EPLRVNVLFKHIQDMLSGDTAVIAETGDSW--FNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD 466 (589)
Q Consensus 389 ~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~--~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GD 466 (589)
-.++..+++++|++.+++++++++|+|++. .|... . ++.+++ .+|+||+++|+|+|+++|.|+++||+++||
T Consensus 11 ~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~-~--~~~~~~---~~GsMG~glpaAiGaalA~p~r~Vv~i~GD 84 (202)
T PRK06163 11 KVMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAG-Q--RPQNFY---MLGSMGLAFPIALGVALAQPKRRVIALEGD 84 (202)
T ss_pred CCcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhh-c--CCCCeE---eecccccHHHHHHHHHHhCCCCeEEEEEcc
Confidence 468899999999999999999999999743 44332 1 223355 389999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHh-CCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCcc-EEEeCCHHHHHHHH
Q 007800 467 GSFQVTAQEISTMIRC-GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCW-TAKVRSEDELTEAM 544 (589)
Q Consensus 467 Gsf~~~~~el~ta~~~-~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~-~~~v~~~~~l~~al 544 (589)
|+|+|+++||+|++++ ++|+++||+||++|++.. ...+....++||.++|++||+ + +++|++.+||+++|
T Consensus 85 G~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~---~~~~~~~~~~Df~~lA~a~G~-----~~~~~v~~~~el~~al 156 (202)
T PRK06163 85 GSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITG---GQPTLTSQTVDVVAIARGAGL-----ENSHWAADEAHFEALV 156 (202)
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcC---CccCCCCCCCCHHHHHHHCCC-----ceEEEeCCHHHHHHHH
Confidence 9999999999999986 789999999999999832 112333356899999999999 7 67999999999999
Q ss_pred HHhhhcCCCCeEEEEEEcCCCC
Q 007800 545 KTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 545 ~~a~~~~~~gp~viev~~~~~~ 566 (589)
+++++ .++|.||||.+++..
T Consensus 157 ~~a~~--~~~p~lIeV~i~~~~ 176 (202)
T PRK06163 157 DQALS--GPGPSFIAVRIDDKP 176 (202)
T ss_pred HHHHh--CCCCEEEEEEecCCC
Confidence 99986 799999999998654
No 78
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.97 E-value=1.3e-29 Score=234.39 Aligned_cols=154 Identities=19% Similarity=0.087 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhc----CCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHH
Q 007800 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA----EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (589)
Q Consensus 29 ~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~ 104 (589)
++|+|++.|+++||+++||+||+++.++++++.+ ..++++|.++||++|++||+||+|.+++ +|++|+|||++|+
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~-v~~~~~gpG~~n~ 79 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR-AMTATSGPGLNLM 79 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc-EEEeeCcchHHHH
Confidence 4799999999999999999999999999999964 4689999999999999999999998888 9999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCC
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (589)
+++|++|+.+++|||+|+|+++....+.. +.. ++-.++..++++ +||+.++.+++++++.+++|++.|.+.++
T Consensus 80 ~~~l~~a~~~~~P~v~i~g~~~~~~~~~~---~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~ 152 (160)
T cd07034 80 AEALYLAAGAELPLVIVVAQRPGPSTGLP---KPD---QSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYRL 152 (160)
T ss_pred HHHHHHHHhCCCCEEEEEeeCCCCCCCCC---CcC---cHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999888744320 111 123567889999 99999999999999999999999999889
Q ss_pred cEEEEe
Q 007800 185 PVYISI 190 (589)
Q Consensus 185 PV~i~i 190 (589)
||+|-+
T Consensus 153 Pv~l~~ 158 (160)
T cd07034 153 PVIVLS 158 (160)
T ss_pred CEEEEc
Confidence 999875
No 79
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.96 E-value=1.8e-29 Score=237.70 Aligned_cols=164 Identities=27% Similarity=0.391 Sum_probs=141.2
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhh
Q 007800 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (589)
Q Consensus 391 i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf 469 (589)
+++..++++|++.+|++.+++.|+|++..|.. +++..++.+++.+.+ |+||+++|+|+|+++|.|+++||+++|||+|
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG~f 79 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDGSF 79 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCchh
Confidence 46788999999999999999999998876654 344445566999888 9999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhhhhh----hcCC-------CCC--CCCCCChHHHHHHccCCCCCccEEEeCC
Q 007800 470 QVTAQEISTMIRCGQRSIIFLINNGGYTIEVE----IHDG-------PYN--VIKNWDYTGLVNAIHNGEGKCWTAKVRS 536 (589)
Q Consensus 470 ~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~----~~~~-------~~~--~~~~~d~~~la~a~G~~~~~~~~~~v~~ 536 (589)
+|+.+||+|++++++|+++||+||++|++.+. .++. ... ..+.+||.++|++||+ ++.+|++
T Consensus 80 ~~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~ 154 (178)
T cd02002 80 MYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGV-----EAERVET 154 (178)
T ss_pred hccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCC-----ceEEeCC
Confidence 99999999999999999999999999998321 1111 111 2256899999999999 8999999
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007800 537 EDELTEAMKTATGEQKDSLCFIEVFV 562 (589)
Q Consensus 537 ~~~l~~al~~a~~~~~~gp~viev~~ 562 (589)
+++|+++++++.+ .++|.||||.+
T Consensus 155 ~~el~~al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 155 PEELDEALREALA--EGGPALIEVVV 178 (178)
T ss_pred HHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 9999999999986 78999999975
No 80
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.96 E-value=4.6e-29 Score=228.36 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=131.7
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccH
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTA 473 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~ 473 (589)
++++++|.+.+ +++++++|+|++..+.. .....+.+|+. +|+||+++|+|+|++++.| ++||+++|||+|+|++
T Consensus 2 ~~~~~~l~~~l-~d~~vv~d~G~~~~~~~-~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~f~m~~ 75 (157)
T cd02001 2 IAAIAEIIEAS-GDTPIVSTTGYASRELY-DVQDRDGHFYM---LGSMGLAGSIGLGLALGLS-RKVIVVDGDGSLLMNP 75 (157)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCHhHHHHH-HhhcCCCCEEe---ecchhhHHHHHHHHHhcCC-CcEEEEECchHHHhcc
Confidence 46789999999 79999999999876652 22233344764 9999999999999999986 8999999999999999
Q ss_pred HHHHHHHHh-CCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCC
Q 007800 474 QEISTMIRC-GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQK 552 (589)
Q Consensus 474 ~el~ta~~~-~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~ 552 (589)
+||+|++++ ++|+++||+||++|++.... . ....++||.++|++||+ ++++|+++++|+++|+++++ .
T Consensus 76 ~el~t~~~~~~~~i~~vV~nN~~~g~~~~~-~---~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~ 144 (157)
T cd02001 76 GVLLTAGEFTPLNLILVVLDNRAYGSTGGQ-P---TPSSNVNLEAWAAACGY-----LVLSAPLLGGLGSEFAGLLA--T 144 (157)
T ss_pred cHHHHHHHhcCCCEEEEEEeCccccccCCc-C---CCCCCCCHHHHHHHCCC-----ceEEcCCHHHHHHHHHHHHh--C
Confidence 999999998 59999999999999983211 1 11136899999999999 89999999999999999996 7
Q ss_pred CCeEEEEEEcCCC
Q 007800 553 DSLCFIEVFVHKD 565 (589)
Q Consensus 553 ~gp~viev~~~~~ 565 (589)
++|.||||.+++.
T Consensus 145 ~gp~vi~v~i~~~ 157 (157)
T cd02001 145 TGPTLLHAPIAPG 157 (157)
T ss_pred CCCEEEEEEecCC
Confidence 8999999999763
No 81
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.96 E-value=4.4e-28 Score=226.92 Aligned_cols=157 Identities=24% Similarity=0.297 Sum_probs=130.5
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccH
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTA 473 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~ 473 (589)
..++++|++.++ +.++++|+|.+....... ..++.+++. +|+||+++|+|+|+++|+ +++||+++|||+|+|++
T Consensus 2 ~~~~~~l~~~l~-d~iiv~d~G~~~~~~~~~-~~~~~~~~~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE-DELVVSNIGVPSKELYAI-RDRPLNFYM---LGSMGLASSIGLGLALAT-DRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC-CCEEEecCCHhHHHHHhh-hcCCCCeee---ccccccHHHHHHHHHHcC-CCcEEEEEcchHHHhhh
Confidence 468899999998 999999999875422222 123334553 899999999999999999 99999999999999999
Q ss_pred HHHHHHHHhC-CCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEE-eCCHHHHHHHHHHhhhcC
Q 007800 474 QEISTMIRCG-QRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK-VRSEDELTEAMKTATGEQ 551 (589)
Q Consensus 474 ~el~ta~~~~-l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-v~~~~~l~~al~~a~~~~ 551 (589)
+||+|+++++ +|+++||+||++|++.... ... ...++||.++|++||+ ++.+ |+++++|+++|+ ++.
T Consensus 76 ~el~ta~~~~~~pv~~vV~NN~~yg~~~~q--~~~-~~~~~d~~~lA~a~G~-----~~~~~v~~~~~l~~al~-a~~-- 144 (181)
T TIGR03846 76 GVLPTIAAESPKNLILVILDNGAYGSTGNQ--PTP-ASRRTDLELVAKAAGI-----RNVEKVADEEELRDALK-ALA-- 144 (181)
T ss_pred hHHHHHHHhCCCCeEEEEEeCCccccccCc--CCC-CCCCCCHHHHHHHCCC-----CeEEEeCCHHHHHHHHH-HHc--
Confidence 9999999999 5999999999999984211 111 1147899999999999 8888 999999999997 775
Q ss_pred CCCeEEEEEEcCCCCC
Q 007800 552 KDSLCFIEVFVHKDDT 567 (589)
Q Consensus 552 ~~gp~viev~~~~~~~ 567 (589)
.++|+||||.+++++.
T Consensus 145 ~~~p~li~v~~~~~~~ 160 (181)
T TIGR03846 145 MKGPTFIHVKVKPGNA 160 (181)
T ss_pred CCCCEEEEEEeCCCCC
Confidence 7899999999998764
No 82
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.96 E-value=5.2e-28 Score=222.26 Aligned_cols=154 Identities=29% Similarity=0.369 Sum_probs=139.8
Q ss_pred HHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHH
Q 007800 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 110 (589)
Q Consensus 31 ~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~ 110 (589)
++|++.|+++||+++||+||++..++++++.+.++++++.++||++|++||+||+|.+++++|++++|||++|+++++.+
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~ 80 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLAD 80 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHH
Confidence 47899999999999999999999999999987678999999999999999999999998888999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEe
Q 007800 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (589)
Q Consensus 111 A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~i 190 (589)
|+.+++|||+|+++++....+.+ . ++..++..++++++||...+.+++++.+.+.+|++.|.+++|||||++
T Consensus 81 a~~~~~Pvl~i~~~~~~~~~~~~-----~---~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 81 AAAEHLPVVFLIGARGISAQAKQ-----T---FQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHhcCCCEEEEeCCCChhhhccC-----c---ccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 99999999999999887533322 1 223467899999999999999999999999999999988899999999
Q ss_pred CC
Q 007800 191 SC 192 (589)
Q Consensus 191 P~ 192 (589)
|.
T Consensus 153 p~ 154 (154)
T cd06586 153 PR 154 (154)
T ss_pred cC
Confidence 84
No 83
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.96 E-value=4.8e-28 Score=228.29 Aligned_cols=161 Identities=25% Similarity=0.270 Sum_probs=133.4
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccccccc-cc---CCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhh
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR-LP---ENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~-~~---~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf 469 (589)
++++++|++.+|++++++.|.|.+....+.+. .+ .+.+|+.+ |+||+++|+|+|++++.|+++||+++|||+|
T Consensus 2 ~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~---g~mG~~lpaAiGaala~p~~~Vv~i~GDG~f 78 (188)
T cd03371 2 EDAIEIVLSRAPATAAVVSTTGMTSRELFELRDRPGGGHAQDFLTV---GSMGHASQIALGIALARPDRKVVCIDGDGAA 78 (188)
T ss_pred HHHHHHHHhhcCCCCEEEECCCcchHHHHHhhcCCCCCccCceeec---CccccHHHHHHHHHHhCCCCcEEEEeCCcHH
Confidence 46789999999999999999997654222222 22 12346543 9999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCC-CeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccE-EEeCCHHHHHHHHHHh
Q 007800 470 QVTAQEISTMIRCGQ-RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWT-AKVRSEDELTEAMKTA 547 (589)
Q Consensus 470 ~~~~~el~ta~~~~l-~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~-~~v~~~~~l~~al~~a 547 (589)
+|+++||+|++++++ |+++||+||++|++.. .......++||.++|++||+ ++ .+|+++++|+++|+++
T Consensus 79 ~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~----~~~~~~~~~d~~~~A~a~G~-----~~~~~v~~~~el~~al~~a 149 (188)
T cd03371 79 LMHMGGLATIGGLAPANLIHIVLNNGAHDSVG----GQPTVSFDVSLPAIAKACGY-----RAVYEVPSLEELVAALAKA 149 (188)
T ss_pred HhhccHHHHHHHcCCCCcEEEEEeCchhhccC----CcCCCCCCCCHHHHHHHcCC-----ceEEecCCHHHHHHHHHHH
Confidence 999999999999986 7999999999999831 11111246899999999999 76 5899999999999999
Q ss_pred hhcCCCCeEEEEEEcCCCCCh
Q 007800 548 TGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 548 ~~~~~~gp~viev~~~~~~~~ 568 (589)
++ .++|.||||.+++...+
T Consensus 150 ~~--~~~p~lIev~~~~~~~~ 168 (188)
T cd03371 150 LA--ADGPAFIEVKVRPGSRS 168 (188)
T ss_pred Hh--CCCCEEEEEEecCCCCC
Confidence 86 78999999999987764
No 84
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.96 E-value=1.6e-28 Score=225.25 Aligned_cols=141 Identities=31% Similarity=0.468 Sum_probs=122.6
Q ss_pred cCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 007800 413 ETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (589)
Q Consensus 413 d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~ 491 (589)
|+|++..|.. ++...++.+++.+.++++||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 1 D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~ 80 (153)
T PF02775_consen 1 DIGCHTMWAAQYLRVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVL 80 (153)
T ss_dssp -SSHHHHHHHHHSCCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEE
T ss_pred CcChhHHHHHHhcCcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEEEE
Confidence 7899988754 456667778999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhhhh----cCCCC--C---CCCCCChHHHHHHccCCCCCccEEEeCCH--HHHHHHHHHhhhcCCCCeEEEEE
Q 007800 492 NNGGYTIEVEI----HDGPY--N---VIKNWDYTGLVNAIHNGEGKCWTAKVRSE--DELTEAMKTATGEQKDSLCFIEV 560 (589)
Q Consensus 492 nN~~~~~~~~~----~~~~~--~---~~~~~d~~~la~a~G~~~~~~~~~~v~~~--~~l~~al~~a~~~~~~gp~viev 560 (589)
||++|++.+.. +.... . .++++||.++|++||+ ++.+|++. +||+++|+++++ .+||+||||
T Consensus 81 nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~~el~~al~~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 81 NNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGI-----KGARVTTPDPEELEEALREALE--SGGPAVIEV 153 (153)
T ss_dssp ESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTS-----EEEEESCHSHHHHHHHHHHHHH--SSSEEEEEE
T ss_pred eCCcceEeccccccCcCcccccccccccccCCHHHHHHHcCC-----cEEEEccCCHHHHHHHHHHHHh--CCCcEEEEc
Confidence 99999993221 12111 1 2678999999999999 99999988 999999999997 999999997
No 85
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.95 E-value=1.2e-27 Score=224.57 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=135.1
Q ss_pred CCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch
Q 007800 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG 467 (589)
Q Consensus 388 ~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG 467 (589)
...+.+..++++|++.++++.+++.|+|++..|... +. +++ ..+++||+++|+|+|+++|.|+++||+++|||
T Consensus 7 c~gc~~~~~~~~l~~~l~~~~iv~~D~G~~~~~~~~---~~--~~~--~~~g~mG~gl~~AiGa~la~p~~~Vv~i~GDG 79 (178)
T cd02008 7 CPGCPHRPSFYALRKAFKKDSIVSGDIGCYTLGALP---PL--NAI--DTCTCMGASIGVAIGMAKASEDKKVVAVIGDS 79 (178)
T ss_pred CCCCCChHHHHHHHHHhcCCeEEecCcCcccccccC---Ch--hhc--cccccCccHHHHHhhHHhhCCCCCEEEEecCh
Confidence 345778889999999999999999999998776532 11 122 36899999999999999999999999999999
Q ss_pred hhccc-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhc--CCC--C-CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHH
Q 007800 468 SFQVT-AQEISTMIRCGQRSIIFLINNGGYTIEVEIH--DGP--Y-NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELT 541 (589)
Q Consensus 468 sf~~~-~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~--~~~--~-~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~ 541 (589)
+|+|+ ++||.|++++++|+++||+||++|++..... ... + ....++||.++|++||+ ++++|++.++|+
T Consensus 80 ~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~ 154 (178)
T cd02008 80 TFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGV-----KRVVVVDPYDLK 154 (178)
T ss_pred HHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCC-----CEEEecCccCHH
Confidence 99998 7999999999999999999999999832111 111 1 22356899999999999 999999888887
Q ss_pred ---HHHHHhhhcCCCCeEEEEEEcC
Q 007800 542 ---EAMKTATGEQKDSLCFIEVFVH 563 (589)
Q Consensus 542 ---~al~~a~~~~~~gp~viev~~~ 563 (589)
++|+++++ .++|.||+|...
T Consensus 155 ~~~~al~~a~~--~~gp~lI~v~~~ 177 (178)
T cd02008 155 AIREELKEALA--VPGVSVIIAKRP 177 (178)
T ss_pred HHHHHHHHHHh--CCCCEEEEEeCC
Confidence 88899886 789999999875
No 86
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.95 E-value=1.1e-26 Score=216.83 Aligned_cols=160 Identities=28% Similarity=0.437 Sum_probs=139.0
Q ss_pred HHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHH
Q 007800 396 LFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQ 474 (589)
Q Consensus 396 ~~~~L~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~ 474 (589)
+++.|.+.++++++++.|+|++..+.. ++...++..+..+.++++||+++|+|+|++++.|+++|++++|||+|+|+++
T Consensus 2 ~~~~l~~~~~~~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~~~~ 81 (168)
T cd00568 2 VLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTGQ 81 (168)
T ss_pred HHHHHHHHCCCCCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhccHH
Confidence 678899999999999999999877654 3444455568888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEeCCchhhhhhhc----CC--CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhh
Q 007800 475 EISTMIRCGQRSIIFLINNGGYTIEVEIH----DG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT 548 (589)
Q Consensus 475 el~ta~~~~l~v~ivv~nN~~~~~~~~~~----~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~ 548 (589)
+|+|++++++|+++||+||++|++..... +. .+...+++||.+++++||+ ++.+|+++++|++++++++
T Consensus 82 ~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~-----~~~~v~~~~~l~~a~~~a~ 156 (168)
T cd00568 82 ELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGA-----KGVRVEDPEDLEAALAEAL 156 (168)
T ss_pred HHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999999833221 11 2244578899999999999 9999999999999999998
Q ss_pred hcCCCCeEEEEEEc
Q 007800 549 GEQKDSLCFIEVFV 562 (589)
Q Consensus 549 ~~~~~gp~viev~~ 562 (589)
+ .++|+||||++
T Consensus 157 ~--~~~p~~i~v~~ 168 (168)
T cd00568 157 A--AGGPALIEVKT 168 (168)
T ss_pred h--CCCCEEEEEEC
Confidence 6 89999999985
No 87
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.95 E-value=9.1e-27 Score=220.87 Aligned_cols=149 Identities=19% Similarity=0.154 Sum_probs=121.3
Q ss_pred CCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchh-hcccHHHHHHHHHhC
Q 007800 405 SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS-FQVTAQEISTMIRCG 483 (589)
Q Consensus 405 ~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGs-f~~~~~el~ta~~~~ 483 (589)
|++.++++|+|++.+...++. .+..+++||+++|+|+|+++++|+++||+++|||+ |+|+++||+|+++++
T Consensus 25 ~~d~ii~~D~G~~~~~~~~~~--------~~~~~g~mG~glpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL~ta~~~~ 96 (193)
T cd03375 25 PEKVVVVSGIGCSSRLPYYFN--------TYGFHTLHGRALAVATGVKLANPDLTVIVVSGDGDLAAIGGNHFIHAARRN 96 (193)
T ss_pred CCCEEEEeCCChhceehhhcc--------ccchhhhhccHHHHHHHHHHhCCCCeEEEEeccchHhhccHHHHHHHHHhC
Confidence 567899999999753322222 12335899999999999999999999999999999 579999999999999
Q ss_pred CCeEEEEEeCCchhhhhhhc-----CC------CCCC-CCCCChHHHHHHccCCCCCccE---EEeCCHHHHHHHHHHhh
Q 007800 484 QRSIIFLINNGGYTIEVEIH-----DG------PYNV-IKNWDYTGLVNAIHNGEGKCWT---AKVRSEDELTEAMKTAT 548 (589)
Q Consensus 484 l~v~ivv~nN~~~~~~~~~~-----~~------~~~~-~~~~d~~~la~a~G~~~~~~~~---~~v~~~~~l~~al~~a~ 548 (589)
+|+++||+||++|++.+... .+ .+.. .+.+||.++|++||+ ++ ++|++++||+++|++++
T Consensus 97 lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~~~~~~~v~~~~el~~al~~al 171 (193)
T cd03375 97 IDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGA-----TFVARGFSGDIKQLKEIIKKAI 171 (193)
T ss_pred CCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCC-----CEEEEEecCCHHHHHHHHHHHH
Confidence 99999999999999832111 11 1111 235899999999999 66 37899999999999999
Q ss_pred hcCCCCeEEEEEEcCCCCCh
Q 007800 549 GEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 549 ~~~~~gp~viev~~~~~~~~ 568 (589)
+ .++|.||||.+++-..|
T Consensus 172 ~--~~gp~vIev~~~C~~~~ 189 (193)
T cd03375 172 Q--HKGFSFVEVLSPCPTFP 189 (193)
T ss_pred h--cCCCEEEEEECCCCCCC
Confidence 7 89999999999986554
No 88
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.94 E-value=1.3e-26 Score=225.85 Aligned_cols=169 Identities=18% Similarity=0.138 Sum_probs=138.2
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCcccccccc-----ccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEE
Q 007800 389 EPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQK-----LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIAC 463 (589)
Q Consensus 389 ~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~-----~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i 463 (589)
..|.+..+++.|++.+|++.+++.|+|++..|..+ +..+....++. ..++||+++|+|+|++++.|+++||++
T Consensus 9 ~gC~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~--~~gsmG~GlpaAiGa~~a~p~r~VV~i 86 (235)
T cd03376 9 AGCGAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFE--NAAAVASGIEAALKALGRGKDITVVAF 86 (235)
T ss_pred CCCccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhc--CHHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 46889999999999999999999999999765432 22333322332 347999999999999999999999999
Q ss_pred Ecchhh-cccHHHHHHHHHhCCCeEEEEEeCCchhh---hhhhcC---CC-----C-C-----CCCCCChHHHHHHccCC
Q 007800 464 IGDGSF-QVTAQEISTMIRCGQRSIIFLINNGGYTI---EVEIHD---GP-----Y-N-----VIKNWDYTGLVNAIHNG 525 (589)
Q Consensus 464 ~GDGsf-~~~~~el~ta~~~~l~v~ivv~nN~~~~~---~~~~~~---~~-----~-~-----~~~~~d~~~la~a~G~~ 525 (589)
+|||+| +|+++||+|++++++|+++||+||+.|++ ++.... .. + . ..+++||.++|++||+
T Consensus 87 ~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~- 165 (235)
T cd03376 87 AGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNI- 165 (235)
T ss_pred EcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCC-
Confidence 999995 79999999999999999999999999997 221111 10 0 1 2256899999999999
Q ss_pred CCCccEE---EeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 526 EGKCWTA---KVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 526 ~~~~~~~---~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
+++ +++++++|+++|+++++ .++|+||||.+++-.
T Consensus 166 ----~~~~~~~v~~~~el~~al~~a~~--~~gP~lIev~~~C~~ 203 (235)
T cd03376 166 ----PYVATASVAYPEDLYKKVKKALS--IEGPAYIHILSPCPT 203 (235)
T ss_pred ----cEEEEEcCCCHHHHHHHHHHHHh--CCCCEEEEEECCCCC
Confidence 764 58999999999999997 889999999999864
No 89
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.94 E-value=2e-26 Score=215.88 Aligned_cols=157 Identities=24% Similarity=0.277 Sum_probs=130.7
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccH
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTA 473 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~ 473 (589)
+.+++.|++.+| ++++++|+|++..+.+.+. ..+.+++ .+|+||+++|+|+|++++.| ++||+++|||+|+|+.
T Consensus 2 ~~~~~~l~~~~~-~~~vv~d~G~~~~~~~~~~-~~~~~~~---~~g~mG~~lp~AiGaala~~-~~vv~i~GDG~f~m~~ 75 (179)
T cd03372 2 RDAIKTLIADLK-DELVVSNIGFPSKELYAAG-DRPLNFY---MLGSMGLASSIGLGLALAQP-RKVIVIDGDGSLLMNL 75 (179)
T ss_pred HHHHHHHHHhCC-CCeEEeCCCHhHHHHHHcc-Ccccccc---cccchhhHHHHHHHHHhcCC-CcEEEEECCcHHHhCH
Confidence 468899999999 9999999998865543332 1223354 28999999999999999988 8999999999999999
Q ss_pred HHHHHHHHhCC-CeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC-CHHHHHHHHHHhhhcC
Q 007800 474 QEISTMIRCGQ-RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR-SEDELTEAMKTATGEQ 551 (589)
Q Consensus 474 ~el~ta~~~~l-~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~-~~~~l~~al~~a~~~~ 551 (589)
+||+|++++++ |+++||+||++|++.... ......++||.++|++||+ ++.+++ ++++|+++|++++
T Consensus 76 ~el~ta~~~~~~~l~vvV~NN~~~~~~~~~---~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~~el~~al~~a~--- 144 (179)
T cd03372 76 GALATIAAEKPKNLIIVVLDNGAYGSTGNQ---PTHAGKKTDLEAVAKACGL-----DNVATVASEEAFEKAVEQAL--- 144 (179)
T ss_pred HHHHHHHHcCCCCEEEEEEcCccccccCCC---CCCCCCCCCHHHHHHHcCC-----CeEEecCCHHHHHHHHHHhc---
Confidence 99999999995 799999999999983111 1111247899999999999 899999 9999999999885
Q ss_pred CCCeEEEEEEcCCCCCh
Q 007800 552 KDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 552 ~~gp~viev~~~~~~~~ 568 (589)
++|.||||.+++.+.+
T Consensus 145 -~gp~lIev~~~~~~~~ 160 (179)
T cd03372 145 -DGPSFIHVKIKPGNTD 160 (179)
T ss_pred -CCCEEEEEEEcCCCCC
Confidence 6899999999887754
No 90
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.94 E-value=2.9e-26 Score=223.80 Aligned_cols=172 Identities=15% Similarity=0.095 Sum_probs=140.9
Q ss_pred CCcCHHHHHHHHHhhCC--CCCEEEecCCccccccccc-cccCCCeeEecc--CccchhhHHHHHHHHhhh-----cCCC
Q 007800 389 EPLRVNVLFKHIQDMLS--GDTAVIAETGDSWFNCQKL-RLPENCGYEFQM--QYGSIGWSVGATLGYAQA-----AKDK 458 (589)
Q Consensus 389 ~~i~~~~~~~~L~~~l~--~~~iiv~d~G~~~~~~~~~-~~~~~~~~~~~~--~~g~mG~~l~~aiGaala-----~~~~ 458 (589)
..|.+.-+++.|.+.++ ++.+++.|+|++..|...+ ..+.+..+..+. +.++||+++|+|||++++ .|++
T Consensus 9 ~gc~~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~ 88 (237)
T cd02018 9 AGCGEVTAVRVVLAALPAPEDTVIANSTGCSSVYASTAPFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKK 88 (237)
T ss_pred cCCCcHHHHHHHHHHhCCCCCEEEEeCCCccceecccCcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCC
Confidence 46788889999999999 9999999999998776433 222222344443 559999999999999999 9999
Q ss_pred cEEEEEcchhhc-ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-----CC------C-CCCCCCCChHHHHHHccCC
Q 007800 459 RVIACIGDGSFQ-VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------P-YNVIKNWDYTGLVNAIHNG 525 (589)
Q Consensus 459 ~vv~i~GDGsf~-~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~-----~~------~-~~~~~~~d~~~la~a~G~~ 525 (589)
+||+++|||+|+ |++++|+|++++++|+++||+||+.|++...+. .+ . ...+.++||.++|++||+
T Consensus 89 ~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~- 167 (237)
T cd02018 89 DVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGC- 167 (237)
T ss_pred cEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCC-
Confidence 999999999998 799999999999999999999999999832111 11 1 123467899999999999
Q ss_pred CCCccEEE---eCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 526 EGKCWTAK---VRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 526 ~~~~~~~~---v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
++++ |+++++|+++|+++++ +.+||+||||.+++..
T Consensus 168 ----~~~~~~~v~~~~~l~~al~~al~-~~~GP~lI~v~i~c~~ 206 (237)
T cd02018 168 ----VYVARLSPALKKHFLKVVKEAIS-RTDGPTFIHAYTPCIT 206 (237)
T ss_pred ----CEEEEEccCCHHHHHHHHHHHHh-cCCCCEEEEEeCCCCC
Confidence 7875 8999999999999982 2789999999988754
No 91
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.94 E-value=1.8e-24 Score=226.60 Aligned_cols=488 Identities=16% Similarity=0.101 Sum_probs=297.2
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCC----CCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCC
Q 007800 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP----ELNLVGCCNELNAGYAADGYARSRGV-GACVVTFT 98 (589)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~----~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~G 98 (589)
...+.+.++|++.+.+.||.++-|+||+++.+|.+.|.+.. ++.+.|..||..|..+|.|.+....+ .+.+. +
T Consensus 13 ~~~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mK--h 90 (640)
T COG4231 13 KRLLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAGASYAGVRALVTMK--H 90 (640)
T ss_pred HHHhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHHhhhcCceeeEEec--c
Confidence 55689999999999999999999999999999999997654 59999999999999999994444335 45555 5
Q ss_pred cchHHHHHHHHHhhhcCCc--EEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHH
Q 007800 99 VGGLSVLNAIAGAYSENLP--VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (589)
Q Consensus 99 pG~~n~~~~l~~A~~~~~P--llvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~ 176 (589)
||+--+.-.+..+.+.++- +|+|+||.|.....++++ |-...++-.--+..+..+++++.+.+..||
T Consensus 91 VGlNvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSqneq-----------dsr~y~~~a~iPvLeP~d~Qea~d~~~~af 159 (640)
T COG4231 91 VGLNVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQNEQ-----------DSRAYGKFALIPVLEPSDPQEAYDYVKYAF 159 (640)
T ss_pred cccccchhhhhhhhhcCccccEEEEEccCCCcccccchh-----------HhHHHHHhcCceeecCCChHHHHHHHHHHH
Confidence 5555556777777777663 999999988874443321 112222222235666779999999999999
Q ss_pred HHhHhcCCcEEEEeCCCCCCCCCCCCCC----CCC-Cc----c-------CCCCCCChh---hHHHHHHHHHHHHHhc--
Q 007800 177 STALKESKPVYISISCNLPGIPHPTFAR----DPV-PF----F-------LAPKVSNQL---GLEAAVEATADFLNKA-- 235 (589)
Q Consensus 177 ~~a~~~~gPV~i~iP~dv~~~~~~~~~~----~~~-~~----~-------~~~~~~~~~---~~~~~i~~~~~~L~~a-- 235 (589)
.++....-||-|..-.++.+....+... ++. +. . ..|...... -.....+++.+.+.+.
T Consensus 160 elSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~ 239 (640)
T COG4231 160 ELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPL 239 (640)
T ss_pred HHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcc
Confidence 9999888999999999987753222111 000 00 0 001000000 0111122333333321
Q ss_pred -------CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEE
Q 007800 236 -------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVF 308 (589)
Q Consensus 236 -------~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~ 308 (589)
..-+-|+..|..+....++|++|- +..+++- +...||+ ......++++.-+-||+
T Consensus 240 n~v~~~~~~~lGII~~G~ay~yVkeAl~~lg--l~~~~lk-------lg~~~Pl---------p~~~i~~F~~g~~~vlV 301 (640)
T COG4231 240 NRVEGSDDAKLGIIASGIAYNYVKEALEDLG--LDDELLK-------LGTPYPL---------PEQLIENFLKGLERVLV 301 (640)
T ss_pred cccccCCCCceEEEecCccHHHHHHHHHHcC--CCceeEE-------ecCCcCC---------CHHHHHHHHhcCcEEEE
Confidence 122323333443333344443331 1111211 1222332 33445666667777777
Q ss_pred eCCC--cCCcccccccccCCCCceEEEcCCceeecCCCccccccHHHHHHHHHHHhhcCch-hhh----hhhhhcCCCCC
Q 007800 309 VGPI--FNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTT-ALE----NYRRIYVPPGI 381 (589)
Q Consensus 309 lG~~--~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~-~~~----~~~~~~~~~~~ 381 (589)
+... +-+.....+. .+ .-+-++....+-+-.+..++++.+.+..+|...+..... .+. +..+.. ....
T Consensus 302 VEE~~P~iE~qv~~~l--~~--~g~~v~v~GKd~gllP~~GElt~~~i~~ai~~~l~~~~~~s~~~~~~~~~~~~-~~~~ 376 (640)
T COG4231 302 VEEGEPFIEEQVKALL--YD--AGLPVEVHGKDEGLLPMEGELTPEKIANAIAKFLGKEGSPSYESIVAEVRKAA-VLIP 376 (640)
T ss_pred EecCCchHHHHHHHHH--Hh--cCCceEeecccccccCcccccCHHHHHHHHHHHhCccCCcccccchhhhhccc-ccCC
Confidence 7431 1111110000 00 001111111110001334567888999999888876432 111 111110 0111
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhCC---CCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCC
Q 007800 382 PVKRAQNEPLRVNVLFKHIQDMLS---GDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDK 458 (589)
Q Consensus 382 ~~~~~~~~~i~~~~~~~~L~~~l~---~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~ 458 (589)
++.+.-...|.++..+..+++... ... -+|+||+.+..+.- +-.....-.||.+++.|=|+.++.+ +
T Consensus 377 ~RpP~lC~GCPHr~sf~~~k~~~~~~~~~~--~~DIGCytlg~~~P-------~~~~d~t~~mGssig~a~g~~~~~~-k 446 (640)
T COG4231 377 PRPPALCPGCPHRPSFYALKKAAAELGGHP--SGDIGCYTLGILPP-------LNTVDTTTMMGSSIGIAGGLSFAST-K 446 (640)
T ss_pred CCCCcCCCCCCCchhhHHHHHHHHhhCCCC--CCCcceeecccCCC-------cchhhhhhhccchhhhccccccccC-C
Confidence 222333345666666666666442 222 67999998765431 2222334568889999999988765 8
Q ss_pred cEEEEEcchhhccc-HHHHHHHHHhCCCeEEEEEeCCchhh-hhhhcCCC-----CCCCCCCChHHHHHHccCCCCCccE
Q 007800 459 RVIACIGDGSFQVT-AQEISTMIRCGQRSIIFLINNGGYTI-EVEIHDGP-----YNVIKNWDYTGLVNAIHNGEGKCWT 531 (589)
Q Consensus 459 ~vv~i~GDGsf~~~-~~el~ta~~~~l~v~ivv~nN~~~~~-~~~~~~~~-----~~~~~~~d~~~la~a~G~~~~~~~~ 531 (589)
++|+++|||+|+|+ +..|.+|+.++.|++++|++|..-+| ..|-+++. .+....++.+++++++|+ ..
T Consensus 447 ~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv-----~~ 521 (640)
T COG4231 447 KIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGV-----ED 521 (640)
T ss_pred ceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCc-----ee
Confidence 99999999999996 88999999999999999999999998 23333332 122356899999999999 44
Q ss_pred EEe---CCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 532 AKV---RSEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 532 ~~v---~~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
+.+ .+.+++.++++++++ ..||+||-.+-.+
T Consensus 522 v~~vdp~~~~~~~~~~keale--~~gpsViiak~~C 555 (640)
T COG4231 522 VETVDPYDVKELSEAIKEALE--VPGPSVIIAKREC 555 (640)
T ss_pred eeccCCcchHHHHHHHHHHhc--CCCceEEEEcCcc
Confidence 443 378899999999997 8889998665544
No 92
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.94 E-value=6.9e-26 Score=224.08 Aligned_cols=162 Identities=20% Similarity=0.184 Sum_probs=133.6
Q ss_pred CcCHHHHHHHHHhh--CCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch
Q 007800 390 PLRVNVLFKHIQDM--LSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG 467 (589)
Q Consensus 390 ~i~~~~~~~~L~~~--l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG 467 (589)
.+.+..++++|++. .+++.++++|+|++..+..++. .....++||+++|+|+|+++|+|+++||+++|||
T Consensus 25 ~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~~~~--------~~~~~~~~G~alPaAiGaklA~Pdr~VV~i~GDG 96 (277)
T PRK09628 25 GVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYVN--------CNTVHTTHGRAVAYATGIKLANPDKHVIVVSGDG 96 (277)
T ss_pred chHHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhccCC--------CCceeeccccHHHHHHHHHHHCCCCeEEEEECch
Confidence 47789999999998 5788999999999865433221 1123358999999999999999999999999999
Q ss_pred hhcc-cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-----CC------CCCC-CCCCChHHHHHHccCCCCCccE---
Q 007800 468 SFQV-TAQEISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------PYNV-IKNWDYTGLVNAIHNGEGKCWT--- 531 (589)
Q Consensus 468 sf~~-~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~-----~~------~~~~-~~~~d~~~la~a~G~~~~~~~~--- 531 (589)
+|+| +.+|+.|++++++|+++||+||+.||+...+. .+ ++.. .+++||.++|++||+ ++
T Consensus 97 ~f~~~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~-----~~va~ 171 (277)
T PRK09628 97 DGLAIGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGA-----SFVAR 171 (277)
T ss_pred HHHHhhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCC-----ceEEE
Confidence 9975 78999999999999999999999999932111 01 1212 256799999999999 66
Q ss_pred EEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 532 AKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 532 ~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
.+|.++++|+++|+++++ .+||+||||.+++..
T Consensus 172 ~~v~~~~el~~al~~Al~--~~Gp~lIeV~~~c~~ 204 (277)
T PRK09628 172 ESVIDPQKLEKLLVKGFS--HKGFSFFDVFSNCHI 204 (277)
T ss_pred EccCCHHHHHHHHHHHHh--CCCCEEEEEcCCCCC
Confidence 589999999999999997 899999999999876
No 93
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.93 E-value=2.4e-25 Score=221.79 Aligned_cols=174 Identities=19% Similarity=0.205 Sum_probs=141.8
Q ss_pred CCcCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeEeccCc-cchhhHHHHHHHHhhhcCCCcEE
Q 007800 389 EPLRVNVLFKHIQDML------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQY-GSIGWSVGATLGYAQAAKDKRVI 461 (589)
Q Consensus 389 ~~i~~~~~~~~L~~~l------~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~l~~aiGaala~~~~~vv 461 (589)
..|....+++.|.+.+ |++.++++|+|++.++.. |+.+.++ ++||+++|+|+|+++|+|+++||
T Consensus 21 pGCg~~~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~---------~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV 91 (286)
T PRK11867 21 PGCGDGSILAALQRALAELGLDPENVAVVSGIGCSGRLPG---------YINTYGFHTIHGRALAIATGLKLANPDLTVI 91 (286)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCcEEEEeCCccccccCc---------cccccchhhhhhcHHHHHHHHHHhCCCCcEE
Confidence 3577788999999998 788999999999976542 3334445 89999999999999999999999
Q ss_pred EEEcchh-hcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-C-----C-----CCCCC-CCCChHHHHHHccCCCCC
Q 007800 462 ACIGDGS-FQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH-D-----G-----PYNVI-KNWDYTGLVNAIHNGEGK 528 (589)
Q Consensus 462 ~i~GDGs-f~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~-~-----~-----~~~~~-~~~d~~~la~a~G~~~~~ 528 (589)
+++|||+ |+|+++||+|++|+|+|+++||+||+.|++..... . . ++... .++|+.++|+++|+
T Consensus 92 ~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga---- 167 (286)
T PRK11867 92 VVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGA---- 167 (286)
T ss_pred EEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCC----
Confidence 9999995 89999999999999999999999999999932211 1 1 11112 35899999999998
Q ss_pred ccEE---EeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC-hHHHHHHHHHh
Q 007800 529 CWTA---KVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT-SKELLEWGSRV 578 (589)
Q Consensus 529 ~~~~---~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~-~~~~~~~~~~~ 578 (589)
.++ .+.++++|+++|+++++ .+||+||||.+++-.. +....+|++.-
T Consensus 168 -~~va~~~~~~~~el~~al~~Al~--~~Gp~lIev~~~C~~~~~~~~~~~~~~~ 218 (286)
T PRK11867 168 -TFVARGFDSDVKQLTELIKAAIN--HKGFSFVEILQPCPTFNNVNTFDWFKER 218 (286)
T ss_pred -cEEEEecCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCCCchHHHHHHHHh
Confidence 555 36789999999999997 8999999999998777 44455565543
No 94
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.93 E-value=1.7e-25 Score=203.74 Aligned_cols=152 Identities=19% Similarity=0.212 Sum_probs=121.5
Q ss_pred HHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEE-ecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHH
Q 007800 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAI 108 (589)
Q Consensus 31 ~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v-~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l 108 (589)
|+|++.|+++||+++||+||+.+.+|++++.. ++++| .++||++|++||++| +.+|+ +||+.++|+| |++++|
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~--~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l 76 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK--DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINAL 76 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh--CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHH
Confidence 68999999999999999999999999999953 59999 888888888888888 98888 8888877766 999999
Q ss_pred HHhh-hcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEE
Q 007800 109 AGAY-SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVY 187 (589)
Q Consensus 109 ~~A~-~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~ 187 (589)
++|+ .+++|||+|+|+++........+. ..+. + +...+..+--++.++.+++++ ..|++|++.|.+.+|||+
T Consensus 77 ~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~--~~g~--~--~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~ 149 (157)
T TIGR03845 77 ASLNKTYGIPLPILASWRGVYKEKIPAQI--PMGR--A--TPKLLDTLGIPYTIPREPEEA-KLIEKAISDAYENSRPVA 149 (157)
T ss_pred HHHHHcCCCCEEEEEeccCCCCCCCcccc--chhh--h--hHHHHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEE
Confidence 9999 999999999999887322111100 1110 0 111222222268899999999 999999999999899999
Q ss_pred EEeCCCC
Q 007800 188 ISISCNL 194 (589)
Q Consensus 188 i~iP~dv 194 (589)
|-++.++
T Consensus 150 il~~~~~ 156 (157)
T TIGR03845 150 ALLDPKY 156 (157)
T ss_pred EEEeCCc
Confidence 9999775
No 95
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.93 E-value=4.1e-25 Score=220.88 Aligned_cols=161 Identities=20% Similarity=0.192 Sum_probs=131.2
Q ss_pred cCHHHHHHHHHhh-C-CCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchh
Q 007800 391 LRVNVLFKHIQDM-L-SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS 468 (589)
Q Consensus 391 i~~~~~~~~L~~~-l-~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGs 468 (589)
+-...++++|.+. + |++.++++|+|++.+...++. .+...++||+++|+|+|+++|+|+++||+++|||+
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~--------~~~~~g~mG~alpaAiGaklA~pd~~VV~i~GDG~ 99 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL--------SHGLHTLHGRAIAFATGAKLANPDLEVIVVGGDGD 99 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc--------cCccchhhccHHHHHHHHHHHCCCCcEEEEeCccH
Confidence 3456677888876 4 778889999999875443321 23334899999999999999999999999999999
Q ss_pred hc-ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-C----C------CC-CCCCCCChHHHHHHccCCCCCccEE---
Q 007800 469 FQ-VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH-D----G------PY-NVIKNWDYTGLVNAIHNGEGKCWTA--- 532 (589)
Q Consensus 469 f~-~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~-~----~------~~-~~~~~~d~~~la~a~G~~~~~~~~~--- 532 (589)
|+ |+++||+|++|+|+|+++||+||++|++...+. . + ++ ....++||.++|+++|+ .++
T Consensus 100 ~~~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~-----~~va~~ 174 (301)
T PRK05778 100 LASIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGA-----TFVARS 174 (301)
T ss_pred HHhccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCC-----CEEEEe
Confidence 85 899999999999999999999999999932211 0 1 11 12257899999999999 665
Q ss_pred EeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 533 KVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 533 ~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
++.++++|+++|+++++ .+||+||||.+++-.
T Consensus 175 ~v~~~~eL~~ai~~A~~--~~GpalIeV~~~C~~ 206 (301)
T PRK05778 175 FAGDVKQLVELIKKAIS--HKGFAFIDVLSPCVT 206 (301)
T ss_pred ccCCHHHHHHHHHHHHh--CCCCEEEEEcCCCCC
Confidence 78999999999999997 899999999998644
No 96
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.92 E-value=1.7e-24 Score=213.58 Aligned_cols=163 Identities=14% Similarity=0.134 Sum_probs=130.4
Q ss_pred CcCHHHHHHHHHhh------CCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEE
Q 007800 390 PLRVNVLFKHIQDM------LSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIAC 463 (589)
Q Consensus 390 ~i~~~~~~~~L~~~------l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i 463 (589)
.|.+..++.++.+. +|++.++++|+|++..+..++ ..+...+.||+++|+|+|+++|+|+++||++
T Consensus 13 GCg~~~i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~--------~~~~~~~~mG~alp~AiGaklA~pd~~VVai 84 (280)
T PRK11869 13 GCGNFGIRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYI--------NVNGFHTLHGRAIPAATAVKATNPELTVIAE 84 (280)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHc--------cCCCCCcccccHHHHHHHHHHHCCCCcEEEE
Confidence 45555555555544 366899999999987753332 1224457799999999999999999999999
Q ss_pred Ecchhhccc-HHHHHHHHHhCCCeEEEEEeCCchhhhh-hhcCC----------CCC-CCCCCChHHHHHHccCCCCCcc
Q 007800 464 IGDGSFQVT-AQEISTMIRCGQRSIIFLINNGGYTIEV-EIHDG----------PYN-VIKNWDYTGLVNAIHNGEGKCW 530 (589)
Q Consensus 464 ~GDGsf~~~-~~el~ta~~~~l~v~ivv~nN~~~~~~~-~~~~~----------~~~-~~~~~d~~~la~a~G~~~~~~~ 530 (589)
+|||+|++. ++||+|++++|+|+++||+||+.|++.. +.... ++. ...++||.++|+++|+ .
T Consensus 85 ~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~-----~ 159 (280)
T PRK11869 85 GGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDA-----S 159 (280)
T ss_pred ECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCC-----C
Confidence 999999975 9999999999999999999999999832 11110 112 2246899999999999 7
Q ss_pred EEE---eCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 531 TAK---VRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 531 ~~~---v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
++. +.++++|+++|++|++ .+||+||||.+.+-..
T Consensus 160 ~va~~~~~~~~~l~~~i~~Al~--~~Gp~lIeV~~pC~~~ 197 (280)
T PRK11869 160 FVARTFSGDIEETKEILKEAIK--HKGLAIVDIFQPCVSF 197 (280)
T ss_pred EEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEECCCCCC
Confidence 777 7899999999999997 8999999999997664
No 97
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.92 E-value=5.4e-24 Score=210.26 Aligned_cols=164 Identities=18% Similarity=0.137 Sum_probs=133.8
Q ss_pred CCcCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEE
Q 007800 389 EPLRVNVLFKHIQDML------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIA 462 (589)
Q Consensus 389 ~~i~~~~~~~~L~~~l------~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~ 462 (589)
..|.+..++..|++.+ +++.++++|+||+.+...++. .....+.||+++|+|+|+++|+|+++||+
T Consensus 11 pGCg~~~il~al~~al~~l~~~~~~~ivvsdiGc~~~~~~~~~--------~~~~~~~~G~alp~A~GaklA~Pd~~VV~ 82 (279)
T PRK11866 11 PGCGNYGILEALRKALAELGIPPENVVVVSGIGCSSNLPEFLN--------TYGIHGIHGRVLPIATGVKWANPKLTVIG 82 (279)
T ss_pred CCCCChHHHHHHHHHHHHhcCCCCCEEEEECCchhhhhhhhcc--------CCCcccccccHHHHHHHHHHHCCCCcEEE
Confidence 4677887888888877 678899999999984333321 22347889999999999999999999999
Q ss_pred EEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhh-hhcCC----------CCCCC-CCCChHHHHHHccCCCCCc
Q 007800 463 CIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEV-EIHDG----------PYNVI-KNWDYTGLVNAIHNGEGKC 529 (589)
Q Consensus 463 i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~-~~~~~----------~~~~~-~~~d~~~la~a~G~~~~~~ 529 (589)
++||| +|.|+++||.|++++|+|+++||+||+.|++.. +.... ++... .+.||.++|+++|+
T Consensus 83 i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~----- 157 (279)
T PRK11866 83 YGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGA----- 157 (279)
T ss_pred EECChHHHHccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCC-----
Confidence 99999 799999999999999999999999999999932 21111 11111 23699999999999
Q ss_pred cEEEe---CCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 530 WTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 530 ~~~~v---~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
.++.. .++++|+++|+++++ .+||+||||..++-..
T Consensus 158 ~~Va~~~~~~~~~l~~~l~~Al~--~~Gps~I~v~~pC~~~ 196 (279)
T PRK11866 158 TFVARGFSGDVKHLKEIIKEAIK--HKGFSFIDVLSPCVTF 196 (279)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCC
Confidence 65554 789999999999997 8999999999998665
No 98
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.91 E-value=1.3e-23 Score=208.15 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=124.2
Q ss_pred cCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeEeccCc-cchhhHHHHHHHHhhhcCCCcEEEE
Q 007800 391 LRVNVLFKHIQDML------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQY-GSIGWSVGATLGYAQAAKDKRVIAC 463 (589)
Q Consensus 391 i~~~~~~~~L~~~l------~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~l~~aiGaala~~~~~vv~i 463 (589)
|....+++.|.+.+ |++.++++|+|++.... .++...++ +.||+++|+|+|+++|+|+++||++
T Consensus 7 Cg~~~i~~~~~~a~~~l~~~p~d~iivsdiGc~~~~~---------~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai 77 (287)
T TIGR02177 7 CGDFGILSALQRALAELNLDPEQVVVVSGIGCSAKTP---------HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV 77 (287)
T ss_pred CCChHHHHHHHHHHHHhcCCCCCEEEEECCCcccccC---------CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE
Confidence 44444444444433 56889999999987422 14444455 5689999999999999999999999
Q ss_pred Ecchhhc-ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc--C---C------CCCCC---CCCChHHHHHHccCCCCC
Q 007800 464 IGDGSFQ-VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH--D---G------PYNVI---KNWDYTGLVNAIHNGEGK 528 (589)
Q Consensus 464 ~GDGsf~-~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~--~---~------~~~~~---~~~d~~~la~a~G~~~~~ 528 (589)
+|||+|+ |+++||+|++|+|+|+++||+||+.|++...+. . + ++... .++++.++|+++|+
T Consensus 78 ~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~---- 153 (287)
T TIGR02177 78 GGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTF---- 153 (287)
T ss_pred eCchHHHhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCe----
Confidence 9999986 899999999999999999999999999932111 0 0 11111 24567778888876
Q ss_pred ccEEE-eCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 529 CWTAK-VRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 529 ~~~~~-v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
.+.. +.++++|+++|++|++ .+||+||||.+.+-..
T Consensus 154 -va~~~~~~~~eL~~ai~~Al~--~~GpslIeV~~pC~t~ 190 (287)
T TIGR02177 154 -VARGFSGDVAHLKEIIKEAIN--HKGYALVDILQPCVTY 190 (287)
T ss_pred -EEEEecCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCC
Confidence 5555 6899999999999997 8999999999997665
No 99
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.90 E-value=2.4e-23 Score=187.12 Aligned_cols=132 Identities=32% Similarity=0.554 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcC
Q 007800 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESAD 304 (589)
Q Consensus 225 i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD 304 (589)
+++++++|.+|+||+|++|.++.++++.+++++|+|++|+||++|+++||+||++||+|+|. .|..+++.+++++++||
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~-~g~~~~~~~~~~l~~aD 79 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGY-LGLFGSPAANEALEQAD 79 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEE-SCGGSCHHHHHHHHHSS
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhccc-CCccCCHHHHHHhcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999994 68888999999999999
Q ss_pred EEEEeCCCcCCcccccc-cccCCCCceEEEcCCceeecCCCcccc----ccHHHHHHHH
Q 007800 305 AYVFVGPIFNDYSSVGY-SLLIKKEKAIIVQPHRVTVGNGPSLGW----VFMADFLSAL 358 (589)
Q Consensus 305 ~vl~lG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~----~~~~~~l~~L 358 (589)
+||++|+++++..+.++ ..+.+..++||||.|+.+++ +.+..+ .|++.+|++|
T Consensus 80 lvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~-~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 80 LVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIG-KNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTT-SSSEESEEEESHHHHHHHHH
T ss_pred EEEEECCCCccccccccccccCCCCEEEEEECCHHHhC-CCCCCCEEEEECHHHHhhCC
Confidence 99999999999777654 33444559999999999997 444333 3788888876
No 100
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.89 E-value=1.5e-20 Score=215.11 Aligned_cols=484 Identities=13% Similarity=0.033 Sum_probs=295.8
Q ss_pred CCCcccHHHHHHHHHHH-------cCC---CEEEecCCcchHHHHHhhhcCC------CCeEEecCchhHHHHhhhhhhh
Q 007800 23 GASVGTLGRHLARRLVE-------IGA---KDVFSVPGDFNLTLLDHLIAEP------ELNLVGCCNELNAGYAADGYAR 86 (589)
Q Consensus 23 ~~~~~~~a~~i~~~L~~-------~GV---~~vfg~pG~~~~~l~~al~~~~------~i~~v~~~hE~~A~~~A~gyar 86 (589)
+...++|.|+|++.+.+ .|+ .+|-|+||++...+.+.|.+.+ +|.+.+..||..|+.+|.|-++
T Consensus 16 g~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~ 95 (1159)
T PRK13030 16 GRIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQ 95 (1159)
T ss_pred CCEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcc
Confidence 45579999999999999 999 9999999999999999997654 3999999999999999999763
Q ss_pred --------ccCceEEEEeCCcchHHHHHHHHHhhhcCC----cEEEEeCCCCccccCCccceeeecCCCChHHHHHh-hh
Q 007800 87 --------SRGVGACVVTFTVGGLSVLNAIAGAYSENL----PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC-FQ 153 (589)
Q Consensus 87 --------~tg~~v~~~t~GpG~~n~~~~l~~A~~~~~----PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (589)
..|.-.+...-|||+--+.-++..+-+.++ -||+|+||.|.....+++ ++.+. ++
T Consensus 96 ~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SSq~e------------qdSr~~~~ 163 (1159)
T PRK13030 96 VEADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSSMP------------HQSDFALI 163 (1159)
T ss_pred ccccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccCcCH------------HHHHHHHH
Confidence 334322334568887777888887666666 599999998776433321 22222 22
Q ss_pred cceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCCCCCCCCCCCC-----CCC--ccCCC----C-CCC-hh-
Q 007800 154 AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARD-----PVP--FFLAP----K-VSN-QL- 219 (589)
Q Consensus 154 ~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~-----~~~--~~~~~----~-~~~-~~- 219 (589)
..---...+.+++++.+....||.++....-||-+..-.++.+....+...+ ..+ +...+ . .+. +.
T Consensus 164 ~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~ 243 (1159)
T PRK13030 164 AWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSL 243 (1159)
T ss_pred HcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHH
Confidence 2223456677899999999999999998788999999888877532221110 001 11111 0 010 00
Q ss_pred ----hHHHHHHHHHHHHHhcC--C--------CEEEeCcccchhhHHHHHHHHH------HHhCCceEEccCCccCCCCC
Q 007800 220 ----GLEAAVEATADFLNKAV--K--------PVLVGGPNIRVAKAQKAFIELA------DATGYPIAIMPSGKGLVPEH 279 (589)
Q Consensus 220 ----~~~~~i~~~~~~L~~a~--r--------pviv~G~g~~~~~~~~~l~~la------e~~~~Pv~tt~~~~g~~~~~ 279 (589)
.....+..+.+.-...+ + .+-|+..|..+....+++..|. +.+|+.++.
T Consensus 244 ~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilK----------- 312 (1159)
T PRK13030 244 AIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYK----------- 312 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEE-----------
Confidence 11122333333222111 1 1444444554444444444432 122344442
Q ss_pred CCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcC--Cccccc--ccccC-CCCceEEEc-CCceeecCCCccccccHHH
Q 007800 280 HPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN--DYSSVG--YSLLI-KKEKAIIVQ-PHRVTVGNGPSLGWVFMAD 353 (589)
Q Consensus 280 ~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~--~~~~~~--~~~~~-~~~~~i~id-~d~~~~~~~~~~~~~~~~~ 353 (589)
+|+. -.+..+...++++..|-||++...-+ +..... +.... ...+++-.. .++..+ .+..+++++..
T Consensus 313 ----vgm~-~PL~~~~i~~F~~g~d~VlVVEE~~p~iE~Qlk~~l~~~~~~~~~~v~GK~~~~G~pl--lp~~gEl~~~~ 385 (1159)
T PRK13030 313 ----VGLS-WPLEPTRLREFADGLEEILVIEEKRPVIEQQIKDYLYNRPGGARPRVVGKHDEDGAPL--LSELGELRPSL 385 (1159)
T ss_pred ----eCCc-cCCCHHHHHHHHhcCCEEEEEeCCchHHHHHHHHHHHhccccCCceeEEEECCCCCcC--CCCcCCcCHHH
Confidence 2321 12344568889999999999975322 111111 11000 011233321 122111 23455677777
Q ss_pred HHHHHHHHhhcCch--hhh----hhh-hh--cC-CCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccc
Q 007800 354 FLSALAKKLRKNTT--ALE----NYR-RI--YV-PPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQK 423 (589)
Q Consensus 354 ~l~~L~~~l~~~~~--~~~----~~~-~~--~~-~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~ 423 (589)
+.++|...+..... ... .+. +. .. .....+.+.-+..|.+...+ .++++.++..|+||+.+..+.
T Consensus 386 v~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~P~~C~GCPH~~s~-----k~~~~~~~~gdIGC~tl~~~~ 460 (1159)
T PRK13030 386 IAPVLAARLARHKPALDRRARVVDLVAPQILSNEADAVVRTPYFCSGCPHNTST-----KVPEGSIAQAGIGCHFMASWM 460 (1159)
T ss_pred HHHHHHHHHhccCccchhhhccccccccccccccccCCCCCCCcCCCCCCchhh-----ccCCCCEeecCcCHHHHhhcc
Confidence 77777666543211 100 110 00 00 00111222223456665555 345678999999999876543
Q ss_pred ccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc-HHHHHHHHHhCCCeEEEEEeCCchhhh-hh
Q 007800 424 LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMIRCGQRSIIFLINNGGYTIE-VE 501 (589)
Q Consensus 424 ~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~~el~ta~~~~l~v~ivv~nN~~~~~~-~~ 501 (589)
+. ....+..||.+++.++|.+....+++||+++|||.|+|+ +..|.+++..+.|++++|++|+.-+|. .|
T Consensus 461 ~~--------~~~~~~~MG~~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tAMTGgQ 532 (1159)
T PRK13030 461 DR--------DTTGLTQMGGEGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVAMTGGQ 532 (1159)
T ss_pred cc--------ccceeeccCccchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCcccccCCC
Confidence 21 123356799999999999888777899999999999996 999999999999999999999999882 22
Q ss_pred hcCCCCCCCCCCChHH---HHHHccCCCCCccEEEeC--CHHH----------------HHHHHHHhhhcCCCCeEEEEE
Q 007800 502 IHDGPYNVIKNWDYTG---LVNAIHNGEGKCWTAKVR--SEDE----------------LTEAMKTATGEQKDSLCFIEV 560 (589)
Q Consensus 502 ~~~~~~~~~~~~d~~~---la~a~G~~~~~~~~~~v~--~~~~----------------l~~al~~a~~~~~~gp~viev 560 (589)
-++ ..+++.+ ++++.|+ +.+.|- ++.+ ..+++++++. +.+|++||-.
T Consensus 533 p~~------g~i~v~~i~~~~~a~Gv-----~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~-~~~GvsViI~ 600 (1159)
T PRK13030 533 PVD------GSISVPQIARQVEAEGV-----SRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELR-ETPGVTVLIY 600 (1159)
T ss_pred CCC------CCCCHHHHHHHHHhCCC-----cEEEEecCChhhccccccCCCcccccHHHHHHHHHHHh-cCCCcEEEEE
Confidence 222 2457777 6779999 555442 4333 2335666662 3678888744
Q ss_pred E
Q 007800 561 F 561 (589)
Q Consensus 561 ~ 561 (589)
.
T Consensus 601 ~ 601 (1159)
T PRK13030 601 D 601 (1159)
T ss_pred c
Confidence 4
No 101
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.88 E-value=4.3e-20 Score=210.68 Aligned_cols=489 Identities=15% Similarity=0.056 Sum_probs=301.0
Q ss_pred cCCCcccHHHHHHHHHHH-------cCC---CEEEecCCcchHHHHHhhhcCC------CCeEEecCchhHHHHhhhhh-
Q 007800 22 GGASVGTLGRHLARRLVE-------IGA---KDVFSVPGDFNLTLLDHLIAEP------ELNLVGCCNELNAGYAADGY- 84 (589)
Q Consensus 22 ~~~~~~~~a~~i~~~L~~-------~GV---~~vfg~pG~~~~~l~~al~~~~------~i~~v~~~hE~~A~~~A~gy- 84 (589)
.+...++|.|+|++.+.+ .|+ .+|-|+||++...+.+.|.+.+ +|.+.+..||..|+.+|-|-
T Consensus 23 ~g~~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ 102 (1165)
T PRK09193 23 RGRVFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQ 102 (1165)
T ss_pred cCCeeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhc
Confidence 345579999999999999 999 9999999999999999997643 49999999999999999554
Q ss_pred -------hhccCceEEEEeCCcchHHHHHHHHHhhhcCC----cEEEEeCCCCccccCCccceeeecCCCChHHHHHhhh
Q 007800 85 -------ARSRGVGACVVTFTVGGLSVLNAIAGAYSENL----PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ 153 (589)
Q Consensus 85 -------ar~tg~~v~~~t~GpG~~n~~~~l~~A~~~~~----PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (589)
++..|.-.+...-|||+-=+.-++..+-+.++ -||+|+||.+.....+++ +|. +.. ++
T Consensus 103 ~~~~~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SSq~e--------qdS-r~~--~~ 171 (1165)
T PRK09193 103 QVNLFPGAKYDGVFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSSTLP--------HQS-EHA--FK 171 (1165)
T ss_pred ccccccceeeccceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccccch--------hhh-HHH--HH
Confidence 34455523344578887777788877666665 499999998876443321 221 112 22
Q ss_pred cceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCCCCCCCCCCCC-C----CC--ccCCCC-----CCChh--
Q 007800 154 AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARD-P----VP--FFLAPK-----VSNQL-- 219 (589)
Q Consensus 154 ~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~-~----~~--~~~~~~-----~~~~~-- 219 (589)
..---...+.+++++.+....||.++....-||-+..-.++.+....+...+ . .+ +...+. ....+
T Consensus 172 ~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~ 251 (1165)
T PRK09193 172 AAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLE 251 (1165)
T ss_pred HcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCCcHH
Confidence 2222445667899999999999999998788999999888876532221100 0 00 111110 01000
Q ss_pred ----hHHHHHHHHHHHHHhc----------CCCEEEeCcccchhhHHHHHHHH------HHHhCCceEEccCCccCCCCC
Q 007800 220 ----GLEAAVEATADFLNKA----------VKPVLVGGPNIRVAKAQKAFIEL------ADATGYPIAIMPSGKGLVPEH 279 (589)
Q Consensus 220 ----~~~~~i~~~~~~L~~a----------~rpviv~G~g~~~~~~~~~l~~l------ae~~~~Pv~tt~~~~g~~~~~ 279 (589)
.....++.+.+..... +.-+-|+..|..+....+.|.+| ++++|++++. +.-.
T Consensus 252 ~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~lg~~~~~~~~~gi~ilK-------vgm~ 324 (1165)
T PRK09193 252 QEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDLGLDEETAARLGIRLYK-------VGMV 324 (1165)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHcCCChhhhcccCCCEEE-------eCCC
Confidence 0111223333322211 11255556666655555665543 4455667764 2223
Q ss_pred CCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcC--CcccccccccCCCC--ceEEEcCC--ceeecCCCccccccHHH
Q 007800 280 HPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN--DYSSVGYSLLIKKE--KAIIVQPH--RVTVGNGPSLGWVFMAD 353 (589)
Q Consensus 280 ~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~--~~~~~~~~~~~~~~--~~i~id~d--~~~~~~~~~~~~~~~~~ 353 (589)
+|| ......++.+..|-||++...-. +..........+.. .-|.-..| ...+ .+..+++++..
T Consensus 325 ~PL---------~~~~i~~Fa~g~~~vlVVEE~~p~iE~qlk~~l~~~~~~~rp~v~GK~~~~g~~l--lp~~gEl~~~~ 393 (1165)
T PRK09193 325 WPL---------EPQGVRAFAEGLDEILVVEEKRQIIEYQLKEELYNWPDDVRPRVIGKFDPQGNWL--LPAHGELSPAI 393 (1165)
T ss_pred CCC---------CHHHHHHHHhcCCEEEEEecCchHHHHHHHHHHhhccCCcCceeEeeeCCCCCcc--CCCcCCcCHHH
Confidence 343 34567888899999999974322 11111100000111 01221112 1111 23445667777
Q ss_pred HHHHHHHHhhcCc-----hh-hh---hhhhhc-----CCCC-CCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccc
Q 007800 354 FLSALAKKLRKNT-----TA-LE---NYRRIY-----VPPG-IPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW 418 (589)
Q Consensus 354 ~l~~L~~~l~~~~-----~~-~~---~~~~~~-----~~~~-~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~ 418 (589)
+.+.|...+.... .. .. .+.... .+.. ..+.+.-+..|.+...++ +|++.++..|+||+.
T Consensus 394 va~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~P~fCsGCPH~~st~-----vp~gs~~~~dIGCht 468 (1165)
T PRK09193 394 IAKAIARRLLKLELPGDVRARIAARLAVLEAKEAALALPRVTAARTPYFCSGCPHNTSTR-----VPEGSRALAGIGCHY 468 (1165)
T ss_pred HHHHHHHHhhhcccccccchhhhhcccccccccccccccccCCCCCCCcCCCCCCcccee-----cCCCCEEecCcChhh
Confidence 7777766554211 00 00 010000 0000 111222233455555544 478899999999998
Q ss_pred cccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc-HHHHHHHHHhCCCeEEEEEeCCchh
Q 007800 419 FNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMIRCGQRSIIFLINNGGYT 497 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~~el~ta~~~~l~v~ivv~nN~~~~ 497 (589)
+..+.- .. . ..+..||..++.++|.+....+++||.++|||.|+|+ +..|.+++..+.|++++|++|+.-+
T Consensus 469 l~~~~p---~~----~-~~~~~MG~eg~~~~G~a~f~~~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~~vA 540 (1165)
T PRK09193 469 MATWMD---RN----T-STFTQMGGEGVPWIGQAPFTDEKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYNDAVA 540 (1165)
T ss_pred hccCCC---CC----C-CeeeccCCcchhhceeccccCCCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCCccc
Confidence 765431 11 1 3456799999999999887777899999999999996 9999999999999999999999999
Q ss_pred hh-hhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHH-----------------HHHHHHhhhcCCCCeEE
Q 007800 498 IE-VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDEL-----------------TEAMKTATGEQKDSLCF 557 (589)
Q Consensus 498 ~~-~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l-----------------~~al~~a~~~~~~gp~v 557 (589)
|. .|-+++. +..++++.++++.|+ +.+.+- ++.++ .+++++.+. ..+|++|
T Consensus 541 MTGgQ~~~g~---~~~~~i~~~~~a~GV-----~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr-~~~GvsV 611 (1165)
T PRK09193 541 MTGGQPVDGG---LSVPQITRQLAAEGV-----KRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELR-EIPGVTV 611 (1165)
T ss_pred ccCCCCCCCC---cchhhHHHHHHhCCC-----CEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHh-cCCCcEE
Confidence 82 2222333 467899999999999 544442 55544 244566662 3778888
Q ss_pred EEEE
Q 007800 558 IEVF 561 (589)
Q Consensus 558 iev~ 561 (589)
|-..
T Consensus 612 iI~~ 615 (1165)
T PRK09193 612 LIYD 615 (1165)
T ss_pred EEEc
Confidence 7444
No 102
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.84 E-value=9.8e-18 Score=191.04 Aligned_cols=488 Identities=15% Similarity=0.064 Sum_probs=292.3
Q ss_pred cCCCcccHHHHHHHHH-------HHcCCC---EEEecCCcchHHHHHhhhcC------CCCeEEecCchhHHHHhhhhhh
Q 007800 22 GGASVGTLGRHLARRL-------VEIGAK---DVFSVPGDFNLTLLDHLIAE------PELNLVGCCNELNAGYAADGYA 85 (589)
Q Consensus 22 ~~~~~~~~a~~i~~~L-------~~~GV~---~vfg~pG~~~~~l~~al~~~------~~i~~v~~~hE~~A~~~A~gya 85 (589)
.+...++|.|+|++.+ .+.|++ +|-|+||++...+.++|.+. .+|.+.+..||..|+-|.-|--
T Consensus 26 ~g~~~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq 105 (1186)
T PRK13029 26 RGRIYISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQ 105 (1186)
T ss_pred cCCEeecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhh
Confidence 3455799999999999 999999 99999999999999999653 3599999999999988888855
Q ss_pred hc--------cCceEEEEeCCcchHHHHHHHHHhh--hcCC--cEEEEeCCCCccccCCccceeeecCCCChHHHHHhhh
Q 007800 86 RS--------RGVGACVVTFTVGGLSVLNAIAGAY--SENL--PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ 153 (589)
Q Consensus 86 r~--------tg~~v~~~t~GpG~~n~~~~l~~A~--~~~~--PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (589)
++ .|.-.+...-|||+--+.-++..+- ..+. -||+|+||.+.....+++ +|. +. .+.
T Consensus 106 ~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SSq~e--------qdS-r~--~~~ 174 (1186)
T PRK13029 106 QLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSSSVA--------HQS-DH--TFI 174 (1186)
T ss_pred hcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccccCH--------HHH-HH--HHH
Confidence 43 2332233456788766677776433 4443 399999998776443321 111 11 222
Q ss_pred cceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCCCCCCCCCCCC-C----CC--ccCCC-----CCCC-hh-
Q 007800 154 AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARD-P----VP--FFLAP-----KVSN-QL- 219 (589)
Q Consensus 154 ~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~-~----~~--~~~~~-----~~~~-~~- 219 (589)
..---...+.+++++.+....||.++....-||-+..-.++.+....+...+ . .+ +..++ .... +.
T Consensus 175 ~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~ 254 (1186)
T PRK13029 175 AWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLA 254 (1186)
T ss_pred HcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCcHH
Confidence 2222455667899999999999999998788999999999987533221111 0 01 11111 0111 00
Q ss_pred ----hHHHHHHHHHHHHHhc----------CCCEEEeCcccchhhHHHHHHHH------HHHhCCceEEccCCccCCCCC
Q 007800 220 ----GLEAAVEATADFLNKA----------VKPVLVGGPNIRVAKAQKAFIEL------ADATGYPIAIMPSGKGLVPEH 279 (589)
Q Consensus 220 ----~~~~~i~~~~~~L~~a----------~rpviv~G~g~~~~~~~~~l~~l------ae~~~~Pv~tt~~~~g~~~~~ 279 (589)
.....+..+.+..... ...+-|+..|..+....+.|.+| ++++|+.++. +.-.
T Consensus 255 ~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ilK-------vgm~ 327 (1186)
T PRK13029 255 QEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLK-------VGCV 327 (1186)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEEE-------eCCC
Confidence 1111223333322211 11245555556555555555542 4455666764 2223
Q ss_pred CCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcC--CcccccccccCCCC--ceEEEcCC---c------eeec--CCC
Q 007800 280 HPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN--DYSSVGYSLLIKKE--KAIIVQPH---R------VTVG--NGP 344 (589)
Q Consensus 280 ~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~--~~~~~~~~~~~~~~--~~i~id~d---~------~~~~--~~~ 344 (589)
+| +......++.+..|-||++...-. +..........+.. .-|.-..| . .+-| -.+
T Consensus 328 ~P---------L~~~~i~~Fa~g~d~vlVVEE~~p~iE~qlk~~l~~~~~~~rp~v~GK~~~~~~~~~~~~~~~g~~llp 398 (1186)
T PRK13029 328 WP---------LDPQSVREFAQGLEEVLVVEEKRAVIEYQLKEELYNWREDVRPAIFGKFDHRDGAGGEWSVPAGRWLLP 398 (1186)
T ss_pred CC---------CCHHHHHHHHhcCCEEEEEecCchHHHHHHHHHHhhccCCcCCeeEecccccccccccccccccCCCCC
Confidence 33 344567888999999999974321 11111100000100 01211111 0 0001 013
Q ss_pred ccccccHHHHHHHHHHHhhcC---c--hh-hh---hhhhh-c----CCCC-CCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 007800 345 SLGWVFMADFLSALAKKLRKN---T--TA-LE---NYRRI-Y----VPPG-IPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (589)
Q Consensus 345 ~~~~~~~~~~l~~L~~~l~~~---~--~~-~~---~~~~~-~----~~~~-~~~~~~~~~~i~~~~~~~~L~~~l~~~~i 409 (589)
..+++++..+.++|...+... . .. .. .+... . .+.. ..+.+.-+..|.+...++. +++.+
T Consensus 399 ~~gEL~p~~va~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~R~P~fCsGCPH~~st~~-----~~gs~ 473 (1186)
T PRK13029 399 AHAELSPALIAKAIARRLAALGLPADVAARMDARVADIEAKERAAAQPRLLTERKPWFCSGCPHNTSTRV-----PEGSR 473 (1186)
T ss_pred cccCcCHHHHHHHHHHHHHhcCCCcccchhhhhhhhhcccccccccccccCCCCCCCcCCCCCCchhhcc-----CCCCE
Confidence 345667777777776665321 0 00 00 11000 0 0011 1112222344666655543 56889
Q ss_pred EEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc-HHHHHHHHHhCCCeEE
Q 007800 410 VIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMIRCGQRSII 488 (589)
Q Consensus 410 iv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~~el~ta~~~~l~v~i 488 (589)
+..|+||+.+..+.... ...+..||..++..+|.+-...+++||..+|||.|+|+ +..|.+++..+.|+++
T Consensus 474 ~~~dIGChtl~~~~~~~--------~~~~~~MGgeg~~~~G~a~f~~~~hv~aniGDgTffHSG~~alr~AV~~~~nit~ 545 (1186)
T PRK13029 474 ALAGIGCHYMAMWMDRS--------TEGFSQMGGEGVAWIGQMPFSRRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITY 545 (1186)
T ss_pred EecCcCHHHHhhccccc--------cceeeccCcchhhheeecccCCCCCEEEEeccccchhcCHHHHHHHHhcCCCEEE
Confidence 99999999876543211 23456799999999999888777899999999999996 9999999999999999
Q ss_pred EEEeCCchhhh-hhhcCCCCCCCCCCChHH---HHHHccCCCCCccEEEe-C-CHHHH-----------------HHHHH
Q 007800 489 FLINNGGYTIE-VEIHDGPYNVIKNWDYTG---LVNAIHNGEGKCWTAKV-R-SEDEL-----------------TEAMK 545 (589)
Q Consensus 489 vv~nN~~~~~~-~~~~~~~~~~~~~~d~~~---la~a~G~~~~~~~~~~v-~-~~~~l-----------------~~al~ 545 (589)
+|++|+.-+|. .|-+++ .+++.+ ++++.|+ +.+.| + ++.++ .++++
T Consensus 546 kIL~N~avAMTGgQp~~G------~~~v~~i~~~~~a~GV-----~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq 614 (1186)
T PRK13029 546 KILYNDAVAMTGGQPVDG------VLTVPQIARQVHAEGV-----RRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQ 614 (1186)
T ss_pred EEEeCcchhccCCCCCCC------cCCHHHHHHHHHhCCc-----cEEEEeCCCccccccccccCCccccccHHHHHHHH
Confidence 99999999882 221122 356666 6699998 55444 3 24222 33556
Q ss_pred HhhhcCCCCeEEEEEE
Q 007800 546 TATGEQKDSLCFIEVF 561 (589)
Q Consensus 546 ~a~~~~~~gp~viev~ 561 (589)
+.+. +.+|++||-..
T Consensus 615 ~~lr-~~~GvsViI~~ 629 (1186)
T PRK13029 615 RELR-EVPGVSVLIYD 629 (1186)
T ss_pred HHHh-cCCCcEEEEEc
Confidence 6662 36788887443
No 103
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.70 E-value=6.7e-17 Score=160.59 Aligned_cols=124 Identities=21% Similarity=0.228 Sum_probs=105.5
Q ss_pred cCccchhhHHHHHHHHhhhcC----CCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~----~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~ 509 (589)
...|+||+++|+|+|++++.+ +++|+|++|||+|++ +.++|.++.++++|.+++|+||++|++... ....
T Consensus 102 ~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~----~~~~ 177 (255)
T cd02012 102 VTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGP----TDDI 177 (255)
T ss_pred eCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCc----Hhhc
Confidence 345999999999999999866 899999999999998 589999999999999999999999987211 1123
Q ss_pred CCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007800 510 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSK 569 (589)
Q Consensus 510 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~ 569 (589)
....||.+++++||+ ++..|+ +.++|.++|+++.+ ..++|++|++.|.+....+
T Consensus 178 ~~~~~~~~~~~a~G~-----~~~~v~G~d~~~l~~al~~a~~-~~~~P~~I~~~t~kg~g~~ 233 (255)
T cd02012 178 LFTEDLAKKFEAFGW-----NVIEVDGHDVEEILAALEEAKK-SKGKPTLIIAKTIKGKGVP 233 (255)
T ss_pred cCchhHHHHHHHcCC-----eEEEECCCCHHHHHHHHHHHHH-cCCCCEEEEEEeecccccC
Confidence 356899999999999 899999 99999999999985 2289999999998755443
No 104
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.65 E-value=6.9e-16 Score=156.34 Aligned_cols=120 Identities=20% Similarity=0.152 Sum_probs=98.4
Q ss_pred ccCccchhhHHHHHHHHhhhc----CCCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 435 QMQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 435 ~~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
....++||+++|.|+|++++. ++++||+++|||+|.++ ..+|.+++++++|+++||.||+ |++..... .
T Consensus 100 ~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~-~~i~~~~~----~ 174 (293)
T cd02000 100 FGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNG-YAISTPTS----R 174 (293)
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCC-eeccCCHH----H
Confidence 356799999999999999986 68899999999999886 4679999999999999999995 98822110 0
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
....+||.++|++||+ ++.+|+ +++++.++++++++ +..++|+||||.|.+
T Consensus 175 ~~~~~~~~~~a~a~G~-----~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r 229 (293)
T cd02000 175 QTAGTSIADRAAAYGI-----PGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYR 229 (293)
T ss_pred HhCCccHHHHHHhCCC-----CEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Confidence 1146799999999999 899997 56788888888775 246899999999875
No 105
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.65 E-value=5.4e-16 Score=159.76 Aligned_cols=117 Identities=20% Similarity=0.136 Sum_probs=96.6
Q ss_pred cCccchhhHHHHHHHHhhhc----CCCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~ 509 (589)
+..+.||+++|.|+|++++. |+++||+++|||+|.++ ..+|.|++++++|+++||+||+ |++.... ...
T Consensus 119 g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~-~~~~~~~----~~~ 193 (341)
T TIGR03181 119 PPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ-WAISVPR----SKQ 193 (341)
T ss_pred CCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC-Cccccch----hhh
Confidence 45578999999999999887 89999999999999997 5889999999999999999997 6651100 011
Q ss_pred CCCCChHHHHHHccCCCCCccEEEeCCHHHH------HHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 510 IKNWDYTGLVNAIHNGEGKCWTAKVRSEDEL------TEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 510 ~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l------~~al~~a~~~~~~gp~viev~~~~ 564 (589)
....||.++|++||+ ++++|+..+.+ +.+++++.. .+||+|||+.|.+
T Consensus 194 ~~~~d~~~~a~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~a~~--~~gP~lIev~t~R 247 (341)
T TIGR03181 194 TAAPTLAQKAIAYGI-----PGVQVDGNDVLAVYAVTKEAVERARS--GGGPTLIEAVTYR 247 (341)
T ss_pred hCCcCHHHHHhhCCC-----CEEEECCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEeec
Confidence 245799999999999 99999988775 677777765 7899999999976
No 106
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.63 E-value=6.4e-15 Score=146.58 Aligned_cols=172 Identities=15% Similarity=0.142 Sum_probs=134.5
Q ss_pred CCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccccc-ccCCCeeEeccCccchhhHHHHHHHHhhh----cCCCcEEE
Q 007800 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR-LPENCGYEFQMQYGSIGWSVGATLGYAQA----AKDKRVIA 462 (589)
Q Consensus 388 ~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~-~~~~~~~~~~~~~g~mG~~l~~aiGaala----~~~~~vv~ 462 (589)
+..|.+..+++.|.+.+.++.+++.|+||+..+...+. .| +-.+...+.||.+.+.|.|++.| .++++||+
T Consensus 21 C~GCg~~~~~~~l~~a~g~~~vi~~~iGC~s~~~~~~p~~~----~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~ 96 (299)
T PRK11865 21 CAGCGAAIAMRLALKALGKNTVIVVATGCLEVITTPYPETA----WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVA 96 (299)
T ss_pred CcCCCcHHHHHHHHHHcCCCEEEEeCCCcccccCccCcCCc----cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEE
Confidence 34688899999999999999999999999987633221 11 23345567889999999998887 35678999
Q ss_pred EEcchhhcc-cHHHHHHHHHhCCCeEEEEEeCCchhhh-hhhcCC----------C------CCCCCCCChHHHHHHccC
Q 007800 463 CIGDGSFQV-TAQEISTMIRCGQRSIIFLINNGGYTIE-VEIHDG----------P------YNVIKNWDYTGLVNAIHN 524 (589)
Q Consensus 463 i~GDGsf~~-~~~el~ta~~~~l~v~ivv~nN~~~~~~-~~~~~~----------~------~~~~~~~d~~~la~a~G~ 524 (589)
+.|||++.. .++.|..+++.+.|+++||+||+.|++. .|.... + ....+..|+.++|.++|+
T Consensus 97 ~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~ 176 (299)
T PRK11865 97 IGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGI 176 (299)
T ss_pred EeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCC
Confidence 999999877 6999999999999999999999999982 111110 0 012246899999999998
Q ss_pred CCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 525 GEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 525 ~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
.++....+.++.++.++|++|++ .+||++|++..++-..
T Consensus 177 --~YVA~~~~~~~~~l~~~i~~A~~--~~Gps~I~v~sPC~~~ 215 (299)
T PRK11865 177 --PYVATASIGYPEDFMEKVKKAKE--VEGPAYIQVLQPCPTG 215 (299)
T ss_pred --CEEEEEeCCCHHHHHHHHHHHHh--CCCCEEEEEECCCCCC
Confidence 33344456799999999999997 8999999999987553
No 107
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.62 E-value=1.9e-15 Score=154.06 Aligned_cols=121 Identities=18% Similarity=0.132 Sum_probs=96.7
Q ss_pred eccCccchhhHHHHHHHHhhhc----CCCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 007800 434 FQMQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (589)
Q Consensus 434 ~~~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~ 507 (589)
....+++||+++|.|+|+++|. +++.||+++|||+|.+. ..+|.++..+++|+++||+||+ |++......
T Consensus 105 ~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~~--- 180 (315)
T TIGR03182 105 FYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVER--- 180 (315)
T ss_pred cccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHHH---
Confidence 3356799999999999999998 68999999999999875 3679999999999999999995 998211100
Q ss_pred CCCCCCChHHHHHHccCCCCCccEEEeCC--HHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 508 NVIKNWDYTGLVNAIHNGEGKCWTAKVRS--EDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 508 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~--~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
.....||.++|++||+ ++++|+. +.++.++++++++ .+.++|+|||+.|.+
T Consensus 181 -~~~~~~~a~~A~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 235 (315)
T TIGR03182 181 -SSSVTDLYKRGESFGI-----PGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYR 235 (315)
T ss_pred -HhCCcCHHHHHHhCCC-----CEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCc
Confidence 1145799999999999 8999984 5566666666654 347899999999975
No 108
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.58 E-value=6.6e-15 Score=151.25 Aligned_cols=116 Identities=18% Similarity=0.124 Sum_probs=93.5
Q ss_pred cCccchhhHHHHHHHHhhhc-----------CCCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCC-chhhhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAA-----------KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNG-GYTIEVE 501 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~-----------~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~-~~~~~~~ 501 (589)
+++++||+++|.|+|+++|. |++.|||++|||+|... ..+|.+++.+++|+++||.||+ +++....
T Consensus 125 ~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~ 204 (341)
T CHL00149 125 GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHH 204 (341)
T ss_pred CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchh
Confidence 57899999999999999994 68899999999999752 3478999999999999999999 4554211
Q ss_pred hcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHH------HHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 502 IHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDEL------TEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 502 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l------~~al~~a~~~~~~gp~viev~~~~ 564 (589)
. .....||.++|++||+ .+++|+..+.+ +.+++++.. .++|+|||+.|.+
T Consensus 205 ~------~~~~~d~a~~a~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR 260 (341)
T CHL00149 205 R------STSIPEIHKKAEAFGL-----PGIEVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYR 260 (341)
T ss_pred h------eeCCccHHHHHHhCCC-----CEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEec
Confidence 0 1135799999999999 99999876653 566666654 7899999999954
No 109
>PRK05899 transketolase; Reviewed
Probab=99.57 E-value=1.1e-14 Score=162.78 Aligned_cols=116 Identities=18% Similarity=0.191 Sum_probs=101.6
Q ss_pred CccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhcccH-H-HHHHHHHhCCCeEEEEEeCCchhhhh
Q 007800 437 QYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVTA-Q-EISTMIRCGQRSIIFLINNGGYTIEV 500 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~~~~-~-el~ta~~~~l~v~ivv~nN~~~~~~~ 500 (589)
..|+||+++|+|+|++++.+ +++|+|++|||+|+++. . +|.+++++++|.+++|+||++|++.
T Consensus 116 ~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~- 194 (624)
T PRK05899 116 TTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISID- 194 (624)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccc-
Confidence 47999999999999999976 78999999999999974 4 5999999999999999999999983
Q ss_pred hhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 501 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 501 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
+......+.||.+++++||+ ++.+|+ +.++|.++++++.. .++|++|++.|.+
T Consensus 195 ----~~~~~~~~~~~~~~~~a~G~-----~~~~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~k 249 (624)
T PRK05899 195 ----GPTEGWFTEDVKKRFEAYGW-----HVIEVDGHDVEAIDAAIEEAKA--STKPTLIIAKTII 249 (624)
T ss_pred ----ccccccccccHHHHhccCCC-----eEEEECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEe
Confidence 22222345799999999999 899999 99999999999986 6799999999964
No 110
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.56 E-value=8.2e-14 Score=138.55 Aligned_cols=172 Identities=13% Similarity=0.096 Sum_probs=130.4
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhc-----CCCcEEEE
Q 007800 389 EPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAA-----KDKRVIAC 463 (589)
Q Consensus 389 ~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~-----~~~~vv~i 463 (589)
..|...-.++.+.+.+.++.+++.|+||+......+.. . .+-.+.....||.+++.|.|+++|. ++..|+++
T Consensus 22 ~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~-~--~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~ 98 (300)
T PRK11864 22 PGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPK-S--PLTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGW 98 (300)
T ss_pred CCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCc-c--cccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 35677778899999998899999999998753222111 1 1233445678999999999999985 34567779
Q ss_pred Ecchhhcc-cHHHHHHHHHhCCCeEEEEEeCCchhhh-hhhcCC----------C-CCCCCCCChHHHHHHccCCCCCcc
Q 007800 464 IGDGSFQV-TAQEISTMIRCGQRSIIFLINNGGYTIE-VEIHDG----------P-YNVIKNWDYTGLVNAIHNGEGKCW 530 (589)
Q Consensus 464 ~GDGsf~~-~~~el~ta~~~~l~v~ivv~nN~~~~~~-~~~~~~----------~-~~~~~~~d~~~la~a~G~~~~~~~ 530 (589)
.|||++.. .++.|..|+..++|+++||.||+.|++. .|..+. + .......|+.+++.++|+ .++.
T Consensus 99 ~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~--~yVA 176 (300)
T PRK11864 99 AGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKV--PYVA 176 (300)
T ss_pred EccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCC--CEEE
Confidence 99999877 6899999999999999999999999982 222211 1 112356899999999998 2233
Q ss_pred EEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 531 TAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 531 ~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
...+.++.++.+++++|++ .+||++|++...+-..
T Consensus 177 ~~~~~~~~~~~~~i~~A~~--~~Gps~I~~~spC~~~ 211 (300)
T PRK11864 177 TASIAYPEDFIRKLKKAKE--IRGFKFIHLLAPCPPG 211 (300)
T ss_pred EEeCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCC
Confidence 3344589999999999997 8999999999987553
No 111
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.46 E-value=3.4e-13 Score=128.03 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=90.3
Q ss_pred cCccchhhHHHHHHHHhhhcC----CCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~ 509 (589)
...|++|.++|.|+|++++.+ +++|+|++|||+++ +...+|.+|.+++.|+++ |+||++|++. ++.
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~-vvdnN~~~~~-----~~~-- 143 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIV-ILNDNEMSIS-----PNV-- 143 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEE-EEECCCcccC-----CCC--
Confidence 357899999999999999875 68999999999998 778999999999999877 5666667651 110
Q ss_pred CCCCChHHHHHHccCCCCCccEEE-e--CCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 510 IKNWDYTGLVNAIHNGEGKCWTAK-V--RSEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 510 ~~~~d~~~la~a~G~~~~~~~~~~-v--~~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
-++..+++++|+ .... + .+.+++.++++++.+ .++|++|++.|.+
T Consensus 144 ---~~~~~~~~a~G~-----~~~~~vdG~d~~~l~~a~~~a~~--~~~P~~I~~~T~k 191 (195)
T cd02007 144 ---GTPGNLFEELGF-----RYIGPVDGHNIEALIKVLKEVKD--LKGPVLLHVVTKK 191 (195)
T ss_pred ---CCHHHHHHhcCC-----CccceECCCCHHHHHHHHHHHHh--CCCCEEEEEEEec
Confidence 068888999998 4432 4 589999999999875 7899999999875
No 112
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=99.45 E-value=2.9e-13 Score=123.16 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCCEEEeCcccch-hhHHHHHHHHHHHhCCceEEccC------CccCCCCCCCCceeeecCCCCCHHHHH
Q 007800 226 EATADFLNKAVKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPS------GKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (589)
Q Consensus 226 ~~~~~~L~~a~rpviv~G~g~~~-~~~~~~l~~lae~~~~Pv~tt~~------~~g~~~~~~pl~~G~~~g~~~~~~~~~ 298 (589)
+.++++|++|+||+|++|.++.+ .++.+++.+|+|++++||++|++ +||++|+ |+++|.. |.++.+...+
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~l-g~~~~~p~~e 101 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHEL-TNYLKDPNWK 101 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHH-HhhccCchhh
Confidence 57789999999999999999998 78899999999999999999999 9999998 9999886 7778888889
Q ss_pred Hh---hhcCEEEEeCCCcCCcccc--cccccCCCCceEEEcCCceeecCCCccccccHHHHHHHHHHH
Q 007800 299 IV---ESADAYVFVGPIFNDYSSV--GYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKK 361 (589)
Q Consensus 299 ~l---~~aD~vl~lG~~~~~~~~~--~~~~~~~~~~~i~id~d~~~~~~~~~~~~~~~~~~l~~L~~~ 361 (589)
.+ .++|+||++|+++.-.... ....|.+ .+.|.++.... ......++.++-+.+++.|.+.
T Consensus 102 ~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~~~y~-~~a~~s~~~~~~~~~~~~l~~l 167 (171)
T PRK00945 102 GLDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITIDRYYH-PNADMSFPNLSKEEYLEYLDEL 167 (171)
T ss_pred hhcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEecCCcC-CCCceecCCCCHHHHHHHHHHH
Confidence 98 7999999999987533221 1222334 56777764431 1101234445556666665443
No 113
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.45 E-value=2.9e-13 Score=142.14 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=91.6
Q ss_pred eccCccchhhHHHHHHHHhhhc-----------CCCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCC-chhhh
Q 007800 434 FQMQYGSIGWSVGATLGYAQAA-----------KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNG-GYTIE 499 (589)
Q Consensus 434 ~~~~~g~mG~~l~~aiGaala~-----------~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~-~~~~~ 499 (589)
..+.++.||+++|.|+|+++|. +++.|||++|||++... ..+|.+|..+++|+++||.||+ .++..
T Consensus 189 ~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~ 268 (433)
T PLN02374 189 LLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 268 (433)
T ss_pred CCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecce
Confidence 3467789999999999999993 57899999999999875 5688999999999999888887 33431
Q ss_pred hhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHH------HHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDEL------TEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 500 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l------~~al~~a~~~~~~gp~viev~~~~ 564 (589)
.. .. ....|+.+.|++||+ ++++|+..+.+ +.+++.+.+ .++|+|||+.|.+
T Consensus 269 ~~---~~---t~~~dia~~A~a~G~-----~~~~VDG~D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR 326 (433)
T PLN02374 269 HL---RA---TSDPEIWKKGPAFGM-----PGVHVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYR 326 (433)
T ss_pred ee---ec---cCCCCHHHHHHhcCC-----cEEEECCCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEe
Confidence 10 00 135699999999999 99999855533 455555554 7899999999854
No 114
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=99.43 E-value=3.2e-13 Score=122.09 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCC------ccCCCCCCCCceeeecCCCCCHHHHHH
Q 007800 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG------KGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (589)
Q Consensus 226 ~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~------~g~~~~~~pl~~G~~~g~~~~~~~~~~ 299 (589)
++++++|++|+||+|++|.++.++++.+++.+|+|++++||++|+.+ ||++ +||.++|.. |.++.+...+.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~-g~~~~~p~~e~ 94 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEI-TQFLADPSWEG 94 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHH-HHhccCchhhh
Confidence 57889999999999999999998889999999999999999999998 8988 778888875 67777888899
Q ss_pred h---hhcCEEEEeCCCcCCccc--ccccccCCCCceEEEcCCceeecCCCccccccHHHHHHHHHHH
Q 007800 300 V---ESADAYVFVGPIFNDYSS--VGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKK 361 (589)
Q Consensus 300 l---~~aD~vl~lG~~~~~~~~--~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~~~~~~l~~L~~~ 361 (589)
+ .++|+||++|+++.-... .....|. +.+.|.++.-.. ......|+.+.-+.+++.|.+.
T Consensus 95 ~~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~~~~i~l~~~y~-pnA~~Sf~n~~~~~~~~~l~~~ 159 (162)
T TIGR00315 95 FDGEGNYDLVLFLGIIYYYLSQMLSSLKHFS-HIVTIAIDKYYQ-PNADYSFPNLSKDEYLDYLRKL 159 (162)
T ss_pred ccCCCCcCEEEEeCCcchHHHHHHHHHHhhc-CcEEEEecCCCC-CCCceeccccCHHHHHHHHHHH
Confidence 9 899999999998732211 1111233 566776663221 1001224444445566665443
No 115
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=99.34 E-value=2.4e-11 Score=121.51 Aligned_cols=167 Identities=19% Similarity=0.159 Sum_probs=125.2
Q ss_pred CcCHHHHHHHHHhhCCC---------CCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcE
Q 007800 390 PLRVNVLFKHIQDMLSG---------DTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRV 460 (589)
Q Consensus 390 ~i~~~~~~~~L~~~l~~---------~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~v 460 (589)
.|...-+++.|.+.+.+ ...|++.+|++..+..+.. .+...+..|-+.+.|.|+++|+++..|
T Consensus 20 GCG~~~~l~~i~~a~~~~~~l~~~~~c~~vvsgig~s~~~~~y~~--------~~~~hs~~gra~a~atGik~A~~~l~V 91 (294)
T COG1013 20 GCGEFIILKLLTQALGDRAELGNATGCSVVVSGIGCSTRWPVYVN--------PPWVHSLHGRAAAVATGIKLANPALSV 91 (294)
T ss_pred CCCchHHHHHHHHhccchhhhccCCCCeEEEeCCccCcccccccc--------CCceeeccCcchhhHHHHHHhccCCeE
Confidence 45555566666665332 3455666666665544322 233446688999999999999999999
Q ss_pred EEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhh-hhcC----C------C-CCCC-CCCChHHHHHHccCCC
Q 007800 461 IACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEV-EIHD----G------P-YNVI-KNWDYTGLVNAIHNGE 526 (589)
Q Consensus 461 v~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~-~~~~----~------~-~~~~-~~~d~~~la~a~G~~~ 526 (589)
|++.||| ++-..++.|..+.+.|.+|++||+||..|+... |..+ + + .... .+.|...+|-++|+
T Consensus 92 iv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~-- 169 (294)
T COG1013 92 IVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGA-- 169 (294)
T ss_pred EEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCC--
Confidence 9999999 667799999999999999999999999999821 1110 0 1 1122 55699999999998
Q ss_pred CCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 527 GKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 527 ~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
.+|....+.++.++...+++|++ .+||++|+|..++-...
T Consensus 170 ~yVAr~~~~~~~~l~~~i~kA~~--~~Gps~I~v~sPC~t~~ 209 (294)
T COG1013 170 TYVARASVGDPKDLTEKIKKAAE--HKGPSFIDVLSPCPTGN 209 (294)
T ss_pred CeEEEecccCHHHHHHHHHHHHh--ccCCeEEEEecCCCCCC
Confidence 34455566799999999999997 88999999999986633
No 116
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.33 E-value=6.4e-12 Score=139.22 Aligned_cols=123 Identities=21% Similarity=0.313 Sum_probs=97.5
Q ss_pred cCccchhhHHHHHHHHhhhc-----CCCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAA-----KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
...|++|.++|.|+|+++|. ++++|+|++|||+++ ++.++|.+|.+++.|+ ++|+||++|++.... +....
T Consensus 114 ~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nl-i~IvdnN~~~i~~~~-~~~~~ 191 (580)
T PRK05444 114 FGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDL-IVILNDNEMSISPNV-GALSN 191 (580)
T ss_pred ECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCE-EEEEECCCCcCCCcc-hhhhh
Confidence 35689999999999999985 578999999999995 7899999999999997 688888888761100 00000
Q ss_pred CCCCCChHHHHHHccCCCCCccEEE-e--CCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAK-V--RSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~-v--~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
.+...++.+++++||+ ++.. + ++.+++.++|+++.. .++|++|++.|.+..-
T Consensus 192 ~~~~~~~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G 246 (580)
T PRK05444 192 YLARLRSSTLFEELGF-----NYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKG 246 (580)
T ss_pred hhccccHHHHHHHcCC-----CeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcC
Confidence 0233577889999999 7774 3 699999999999886 6799999999987554
No 117
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.23 E-value=1.3e-09 Score=119.85 Aligned_cols=168 Identities=17% Similarity=0.073 Sum_probs=131.1
Q ss_pred ccCCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC---CCCeEEecCchhHHHHhhhhhhhccCceEEEEeC
Q 007800 21 RGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTF 97 (589)
Q Consensus 21 ~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~ 97 (589)
.+....++|+++++......|++.++++|+++.+++++.|.+. .++.++++-+|.+|..||.|.+.+ |.-++..||
T Consensus 190 ~~~~~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~a-G~Ra~taTS 268 (562)
T TIGR03710 190 DGDRILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYA-GARAMTATS 268 (562)
T ss_pred CCcEEEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhc-CCceeecCC
Confidence 4455679999999999999999999999999999999998753 369999999999999999996665 544566799
Q ss_pred CcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHH-Hhhh---cceeEEEEeCChhhHHHHHH
Q 007800 98 TVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQEL-RCFQ---AITCSQAVVNNLGDAHELID 173 (589)
Q Consensus 98 GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~tk~~~~v~~~~~~~~~l~ 173 (589)
|||+.-+.-++.-|...++|++++..+++....+-. +.. +..|.. ..+. .+-.-.....+++++.++..
T Consensus 269 g~Gl~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~-----t~~--eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~ 341 (562)
T TIGR03710 269 GPGFALMTEALGLAGMTETPLVIVDVQRGGPSTGLP-----TKT--EQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAI 341 (562)
T ss_pred CCChhHhHHHHhHHHhccCCEEEEEcccCCCCCCCC-----CCc--cHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHH
Confidence 999999999999999999999999999885422210 011 111211 1211 12234556688999999999
Q ss_pred HHHHHhHhcCCcEEEEeCCCCCC
Q 007800 174 TAISTALKESKPVYISISCNLPG 196 (589)
Q Consensus 174 ~A~~~a~~~~gPV~i~iP~dv~~ 196 (589)
+||++|....-||.+.....+.+
T Consensus 342 ~Af~lAe~~~~PViv~~D~~l~~ 364 (562)
T TIGR03710 342 EAFNLAEKYQTPVIVLSDQYLAN 364 (562)
T ss_pred HHHHHHHHhcCCEEEEechHHhC
Confidence 99999998889999988666644
No 118
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.22 E-value=3.2e-09 Score=109.91 Aligned_cols=163 Identities=13% Similarity=0.029 Sum_probs=127.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC---CCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~ 102 (589)
.++|+++++....+.|++.+.++|+++.+++++.|.+. -+..|+.+-+|.+|..||.|.+.+..| ++..|||||++
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R-a~taTSg~Gl~ 84 (352)
T PRK07119 6 LMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR-VMTSSSSPGIS 84 (352)
T ss_pred eehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC-EEeecCcchHH
Confidence 58999999999999999999999999999999998653 246899999999999999997666445 55568999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhh-----cceeEEEEeCChhhHHHHHHHHHH
Q 007800 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ-----AITCSQAVVNNLGDAHELIDTAIS 177 (589)
Q Consensus 103 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~tk~~~~v~~~~~~~~~l~~A~~ 177 (589)
-+.-++.-|...++|++++-.+++.. +.+ .+.. +..|..-..+ ..-.-.....+++++.++..+||+
T Consensus 85 lm~E~l~~a~~~e~P~v~v~v~R~~p--~~g----~t~~--eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~ 156 (352)
T PRK07119 85 LKQEGISYLAGAELPCVIVNIMRGGP--GLG----NIQP--SQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFD 156 (352)
T ss_pred HHHHHHHHHHHccCCEEEEEeccCCC--CCC----CCcc--hhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHH
Confidence 99999999999999988888776643 221 0111 1112111111 222446677899999999999999
Q ss_pred HhHhcCCcEEEEeCCCCCCC
Q 007800 178 TALKESKPVYISISCNLPGI 197 (589)
Q Consensus 178 ~a~~~~gPV~i~iP~dv~~~ 197 (589)
+|...+-||.+.....+.+.
T Consensus 157 lAE~~~~PViv~~D~~lsh~ 176 (352)
T PRK07119 157 LADKYRNPVMVLGDGVLGQM 176 (352)
T ss_pred HHHHhCCCEEEEcchhhhCc
Confidence 99988889999987666443
No 119
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.08 E-value=4e-09 Score=110.09 Aligned_cols=164 Identities=13% Similarity=0.024 Sum_probs=129.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC---CCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~ 102 (589)
.++|+++++......||+.++++|+++.+++++.|.+. -+..++..-+|.+|..||.|.+.+ |.-++..|||||++
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~a-G~Ra~TaTSg~Gl~ 84 (376)
T PRK08659 6 FLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWA-GAKAMTATSGPGFS 84 (376)
T ss_pred EeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhh-CCCeEeecCCCcHH
Confidence 58999999999999999999999999999999998653 246899999999999999996665 54466779999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHH-Hhhh---cceeEEEEeCChhhHHHHHHHHHHH
Q 007800 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQEL-RCFQ---AITCSQAVVNNLGDAHELIDTAIST 178 (589)
Q Consensus 103 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~tk~~~~v~~~~~~~~~l~~A~~~ 178 (589)
-+.=++.-|...++|++++..+++....+-. . .. +..|+. ..+. .+-.-.....+++++.++..+||++
T Consensus 85 lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p--~---~~--~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~l 157 (376)
T PRK08659 85 LMQENIGYAAMTETPCVIVNVQRGGPSTGQP--T---KP--AQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNL 157 (376)
T ss_pred HHHHHHHHHHHcCCCEEEEEeecCCCCCCCC--C---Cc--CcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHH
Confidence 9999999888899999999999875422211 0 11 111222 2222 3334566778999999999999999
Q ss_pred hHhcCCcEEEEeCCCCCCC
Q 007800 179 ALKESKPVYISISCNLPGI 197 (589)
Q Consensus 179 a~~~~gPV~i~iP~dv~~~ 197 (589)
|...+-||.+....-+.+.
T Consensus 158 AE~~~~PViv~~D~~lsh~ 176 (376)
T PRK08659 158 AEKYRTPVIVLADEVVGHM 176 (376)
T ss_pred HHHHCCCEEEEechHhhCC
Confidence 9998889999987765543
No 120
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.07 E-value=2.8e-09 Score=110.90 Aligned_cols=164 Identities=12% Similarity=0.020 Sum_probs=128.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC---CCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~ 102 (589)
.++|+++|+......|++.+.++|+++.+++.+.|.+. .+..++.+-+|.+|..||.|.+.+..| ++..|||||++
T Consensus 5 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R-a~taTSg~G~~ 83 (375)
T PRK09627 5 ISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK-SMTASSGPGIS 83 (375)
T ss_pred EechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC-EEeecCCchHH
Confidence 58999999999999999999999999999999988652 367899999999999999996666445 66679999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHH-HHhhh---cceeEEEEeCChhhHHHHHHHHHHH
Q 007800 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQE-LRCFQ---AITCSQAVVNNLGDAHELIDTAIST 178 (589)
Q Consensus 103 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~tk~~~~v~~~~~~~~~l~~A~~~ 178 (589)
-+.=.+.-|...++|++++..+++....+- ++ . .+..|. ....+ .+.+-.....+++++.+...+||++
T Consensus 84 lm~E~~~~a~~~e~P~V~~~~~R~GpstG~-p~----~--~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~l 156 (375)
T PRK09627 84 LKAEQIGLGFIAEIPLVIVNVMRGGPSTGL-PT----R--VAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNL 156 (375)
T ss_pred HHhhHHHHHHhccCCEEEEEeccCCCcCCC-CC----c--cchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999876432221 00 0 011121 11211 3344466778999999999999999
Q ss_pred hHhcCCcEEEEeCCCCCCC
Q 007800 179 ALKESKPVYISISCNLPGI 197 (589)
Q Consensus 179 a~~~~gPV~i~iP~dv~~~ 197 (589)
|....-||.+.....+.+.
T Consensus 157 AE~~~~PViv~~D~~lsh~ 175 (375)
T PRK09627 157 AERFMTPVFLLLDETVGHM 175 (375)
T ss_pred HHHHcCceEEecchHHhCC
Confidence 9988899999988766543
No 121
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.03 E-value=1.4e-09 Score=121.35 Aligned_cols=124 Identities=19% Similarity=0.285 Sum_probs=92.5
Q ss_pred CccchhhHHHHHHHHhhhcCCCcEEEEEcchhh--cccHHHHHHHHHhCCCeEEEEEeCCchhhhh----------hh-c
Q 007800 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF--QVTAQEISTMIRCGQRSIIFLINNGGYTIEV----------EI-H 503 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf--~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~----------~~-~ 503 (589)
+.++||+++++|+|+++..++++|+|++|||++ .+...++.++.++++|+++ |+||++|.+.. .. .
T Consensus 121 ~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~-I~dnN~~~i~~~~~~~~~~l~~~~~ 199 (641)
T PRK12571 121 SSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIV-ILNDNEMSIAPPVGALAAYLSTLRS 199 (641)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEE-EEECCCeeecCCccHHHHHHHHHhc
Confidence 467899999999999999889999999999999 5578999999999999755 77777777610 00 0
Q ss_pred CCCCCC-----------CC-CC---------------ChHHHHHHccCCCCCccEE-EeC--CHHHHHHHHHHhhhcCCC
Q 007800 504 DGPYNV-----------IK-NW---------------DYTGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKD 553 (589)
Q Consensus 504 ~~~~~~-----------~~-~~---------------d~~~la~a~G~~~~~~~~~-~v~--~~~~l~~al~~a~~~~~~ 553 (589)
...|.. ++ +. -.....++||+ ++. .|+ |.++|.++|+++.. ..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~-----~~~~~vdGhd~~~l~~al~~ak~-~~~ 273 (641)
T PRK12571 200 SDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGF-----TYVGPIDGHDMEALLSVLRAARA-RAD 273 (641)
T ss_pred CcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCC-----EEECccCCCCHHHHHHHHHHHHh-CCC
Confidence 111110 00 00 01367899999 787 575 89999999998863 247
Q ss_pred CeEEEEEEcCCCCC
Q 007800 554 SLCFIEVFVHKDDT 567 (589)
Q Consensus 554 gp~viev~~~~~~~ 567 (589)
+|++|++.|.+.--
T Consensus 274 ~P~~I~~~T~kGkG 287 (641)
T PRK12571 274 GPVLVHVVTEKGRG 287 (641)
T ss_pred CCEEEEEEecCccC
Confidence 89999999987544
No 122
>PLN02790 transketolase
Probab=99.03 E-value=1.5e-09 Score=121.40 Aligned_cols=118 Identities=24% Similarity=0.277 Sum_probs=93.8
Q ss_pred cCccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIE 499 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~ 499 (589)
...|++|.+++.|+|+|+|.+ +..|+|++|||++.-. ...+..|..+++|-+++|+||++|.+.
T Consensus 102 ~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~ 181 (654)
T PLN02790 102 VTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISID 181 (654)
T ss_pred ccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCcccc
Confidence 446889999999999999865 4679999999999884 666777888999988889999999872
Q ss_pred hhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEe----CCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV----RSEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 500 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v----~~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
+.-.....-++.+.+++||+ ++..| +|.++|.++++++.. ..++|++|+++|.+
T Consensus 182 -----~~~~~~~~~~~~~~f~a~G~-----~~~~vdgg~hd~~~l~~a~~~a~~-~~~~P~lI~~~T~k 239 (654)
T PLN02790 182 -----GDTEIAFTEDVDKRYEALGW-----HTIWVKNGNTDYDEIRAAIKEAKA-VTDKPTLIKVTTTI 239 (654)
T ss_pred -----CCcccccchhHHHHHHHcCC-----eEEEECCCCCCHHHHHHHHHHHHh-cCCCeEEEEEEEee
Confidence 11111123478899999999 89888 468899999988863 25799999999964
No 123
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.02 E-value=7.2e-10 Score=112.36 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=83.8
Q ss_pred ccchhhHHHHHHHHhhhc----CCCcEEEEEcchhhccc-HHHHHHH-HHhCCCeEEEEEeCCchhhhhhhcCCCCCCCC
Q 007800 438 YGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT-AQEISTM-IRCGQRSIIFLINNGGYTIEVEIHDGPYNVIK 511 (589)
Q Consensus 438 ~g~mG~~l~~aiGaala~----~~~~vv~i~GDGsf~~~-~~el~ta-~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~ 511 (589)
.+.+|..+|.|.|.++|. .+.-++|++|||+..-. +.|-.+. ..+++|+++||.||+ |++...... ...
T Consensus 100 ~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~-~aist~~~~----~~~ 174 (300)
T PF00676_consen 100 SSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ-YAISTPTEE----QTA 174 (300)
T ss_dssp ESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES-EETTEEHHH----HCS
T ss_pred cccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC-cccccCccc----ccc
Confidence 466777788888888874 35679999999997663 6665554 459999977777776 777110000 003
Q ss_pred CCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 512 NWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 512 ~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
..++.+.|++||+ ++++|+ |+.++-+++++|++ ++.+||+|||+.|.+
T Consensus 175 ~~~~~~~a~~~gi-----p~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR 226 (300)
T PF00676_consen 175 SPDIADRAKGYGI-----PGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYR 226 (300)
T ss_dssp SSTSGGGGGGTTS-----EEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--
T ss_pred ccchhhhhhccCC-----cEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeecc
Confidence 4467889999999 999996 88888888888887 567899999999964
No 124
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.00 E-value=1.5e-09 Score=109.99 Aligned_cols=118 Identities=21% Similarity=0.184 Sum_probs=87.4
Q ss_pred cCccchhhHHHHHHHHhhhcC-----CCcEEEEEcchhhcc-cHHHHHHHHH-hCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAAK-----DKRVIACIGDGSFQV-TAQEISTMIR-CGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~-----~~~vv~i~GDGsf~~-~~~el~ta~~-~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
+..+.+|..+|.|.|+++|.+ ++-+++++|||+..- .+.|-.|.+. +++|++++| +|++|+|.. +..
T Consensus 133 ~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~i-eNN~yAiSv-----p~~ 206 (358)
T COG1071 133 GGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVI-ENNQYAISV-----PRS 206 (358)
T ss_pred CCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEE-ecCCceeec-----chh
Confidence 556788999999999999843 337999999999988 4777777665 999966655 555599831 001
Q ss_pred -CCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 509 -VIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 -~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
......+..-|.+||+ .+++|+ |+..+-++.++|.+ +.++||+|||..|.+
T Consensus 207 ~q~~~~~~~~ra~aygi-----pgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR 262 (358)
T COG1071 207 RQTAAEIIAARAAAYGI-----PGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYR 262 (358)
T ss_pred hcccchhHHhhhhccCC-----CeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Confidence 1122346668899999 999998 77777777777776 457899999999964
No 125
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=98.98 E-value=8.9e-10 Score=112.44 Aligned_cols=117 Identities=25% Similarity=0.317 Sum_probs=89.0
Q ss_pred CccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhh
Q 007800 437 QYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEV 500 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~ 500 (589)
..|++|.|++.|+|+|+|.+ +.+|+|++|||.++- ....+..|.+++|+-+|+|+|++...+
T Consensus 109 stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~-- 186 (332)
T PF00456_consen 109 STGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQI-- 186 (332)
T ss_dssp --SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEET--
T ss_pred eccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCccc--
Confidence 46899999999999999852 457999999999998 477778889999998888998887766
Q ss_pred hhcCCCCCCCCCCChHHHHHHccCCCCCccEEEe---CCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 501 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 501 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v---~~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
++.-......|+.+..++||+ +..+| ++.++|.++|+++.. ..++|++|.+.|-.
T Consensus 187 ---dg~~~~~~~~~~~~k~~a~Gw-----~v~~v~dGhd~~~i~~A~~~a~~-~~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 187 ---DGPTDIVFSEDIAKKFEAFGW-----NVIEVCDGHDVEAIYAAIEEAKA-SKGKPTVIIARTVK 244 (332)
T ss_dssp ---TEEGGGTHHSHHHHHHHHTT------EEEEEEETTBHHHHHHHHHHHHH-STSS-EEEEEEE-T
T ss_pred ---CCCcccccchHHHHHHHHhhh-----hhcccccCcHHHHHHHHHHHHHh-cCCCCceeecceEE
Confidence 221111123478999999999 88888 599999999999975 34899999999874
No 126
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.97 E-value=4.4e-09 Score=116.25 Aligned_cols=122 Identities=21% Similarity=0.238 Sum_probs=91.0
Q ss_pred CccchhhHHHHHHHHhhhcC----CCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCC---C
Q 007800 437 QYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP---Y 507 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~----~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~---~ 507 (589)
..|..|.++|.|+|+++|.. ++.|+|++|||++.. ....|..|..+++|+++|| ||++|++.... ++. .
T Consensus 111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii-~dN~~si~~~~-~~~~~~l 188 (581)
T PRK12315 111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIV-NDNQMSIAENH-GGLYKNL 188 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEE-ECCCCcCCCCC-chhhhhh
Confidence 55777889999999988842 568999999999988 3677777888898866555 55557762110 100 0
Q ss_pred ---CCCCCCChHHHHHHccCCCCCccEEEe-C--CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 508 ---NVIKNWDYTGLVNAIHNGEGKCWTAKV-R--SEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 508 ---~~~~~~d~~~la~a~G~~~~~~~~~~v-~--~~~~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
......+...++++||+ +++.+ + |.+++.++++++.. .+||+|||++|.+..-
T Consensus 189 ~~~~~~~~~~~~~~~~a~G~-----~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G 247 (581)
T PRK12315 189 KELRDTNGQSENNLFKAMGL-----DYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKG 247 (581)
T ss_pred hhhhhcccccHHHHHHhcCC-----eEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCC
Confidence 11134567889999999 88888 5 89999999999875 7899999999987554
No 127
>PRK12754 transketolase; Reviewed
Probab=98.96 E-value=3.5e-09 Score=117.65 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=93.4
Q ss_pred CccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhh
Q 007800 437 QYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEV 500 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~ 500 (589)
..|++|.+++.|+|+|+|.+ +.+|+|++|||+++-. ...+..|.+++||.+++|+||+++.+
T Consensus 112 stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~i-- 189 (663)
T PRK12754 112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISI-- 189 (663)
T ss_pred cCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCcc--
Confidence 46889999999999998842 4679999999999984 55556677899998889999998887
Q ss_pred hhcCCCCCCCCCCChHHHHHHccCCCCCccEEE-eC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 501 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK-VR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 501 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-v~--~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
+++-......|+.+.+++||+ ++.+ |+ |.+++.+|++++.. ..++|++|+++|.+
T Consensus 190 ---dg~~~~~~~~~~~~r~~a~Gw-----~vi~vvDG~D~~ai~~A~~~a~~-~~~~Pt~I~~~T~~ 247 (663)
T PRK12754 190 ---DGHVEGWFTDDTAMRFEAYGW-----HVIRGIDGHDADSIKRAVEEARA-VTDKPSLLMCKTII 247 (663)
T ss_pred ---CcchhhccCccHHHHHHhcCC-----eEEeeECCCCHHHHHHHHHHHHh-cCCCCEEEEEEeee
Confidence 221111124689999999999 8887 65 89999999998863 35899999999874
No 128
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.95 E-value=1.7e-08 Score=105.49 Aligned_cols=156 Identities=15% Similarity=0.030 Sum_probs=121.9
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC-----CCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCc
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-----~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~Gp 99 (589)
..++|+++++......|++.++++|+++.+++.+.|.+. -+..|+..-+|.+|..||.|.+.+..| ++..||||
T Consensus 4 ~~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR-a~TaTSg~ 82 (390)
T PRK08366 4 KVVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR-AFTATSAQ 82 (390)
T ss_pred EEeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC-eEeeeCcc
Confidence 458999999999999999999999999999999988653 257888888999999999997666445 55668999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHH-hhhccee-EEEEeCChhhHHHHHHHHHH
Q 007800 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR-CFQAITC-SQAVVNNLGDAHELIDTAIS 177 (589)
Q Consensus 100 G~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~tk-~~~~v~~~~~~~~~l~~A~~ 177 (589)
|++-+.-++.-|...++|+|+.-.+++... .-. +.. +|.+ ++.-.+. ......+++++.++..+||+
T Consensus 83 Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~~-----~~~-----~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~ 151 (390)
T PRK08366 83 GLALMHEMLHWAAGARLPIVMVDVNRAMAP-PWS-----VWD-----DQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFK 151 (390)
T ss_pred cHHHHhhHHHHHHhcCCCEEEEEeccCCCC-CCC-----Ccc-----hhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHH
Confidence 999999999999999999998887776552 111 111 1221 1111122 33344789999999999999
Q ss_pred HhHhcCCcEEEEeCC
Q 007800 178 TALKESKPVYISISC 192 (589)
Q Consensus 178 ~a~~~~gPV~i~iP~ 192 (589)
+|....-||.+....
T Consensus 152 lAE~~~~PViv~~Dg 166 (390)
T PRK08366 152 VAETVNLPAMVVESA 166 (390)
T ss_pred HHHHHCCCEEEEecC
Confidence 999878999998753
No 129
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=98.94 E-value=4.2e-09 Score=117.82 Aligned_cols=118 Identities=23% Similarity=0.230 Sum_probs=93.2
Q ss_pred cCccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIE 499 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~ 499 (589)
...|++|.+++.|+|+|+|.+ +.+|+|++|||++.-. ...+..|..++||.+++|+||++|.+
T Consensus 107 ~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i- 185 (653)
T TIGR00232 107 ATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISI- 185 (653)
T ss_pred eCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeee-
Confidence 346889999999999998743 4569999999999884 55566677899999999999999988
Q ss_pred hhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEe-C--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV-R--SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 500 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v-~--~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
+++-......++.+..++||+ ++.+| + |.+++.++++++.. ..++|++|++.|.+
T Consensus 186 ----~~~~~~~~~~~~~~~~~a~Gw-----~~~~v~DG~D~~ai~~A~~~a~~-~~~~P~~I~~~T~~ 243 (653)
T TIGR00232 186 ----DGAVDGSFTEDVAKRFEAYGW-----EVLEVEDGHDLAAIDAAIEEAKA-SKDKPTLIEVTTTI 243 (653)
T ss_pred ----ccccccccCccHHHHHHhcCC-----cEEEeCCCCCHHHHHHHHHHHHh-CCCCCEEEEEEeee
Confidence 221111124589999999999 88888 5 78999999988864 22589999999853
No 130
>PRK12753 transketolase; Reviewed
Probab=98.93 E-value=4e-09 Score=117.91 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=93.3
Q ss_pred CccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhh
Q 007800 437 QYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEV 500 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~ 500 (589)
..|++|.+++.|+|+|+|.+ +.+|+|++|||++.-. ...+..|.++++|.+|+|+||+++.+
T Consensus 112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i-- 189 (663)
T PRK12753 112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISI-- 189 (663)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcC--
Confidence 56889999999999998842 4689999999999884 56666778899998888999998887
Q ss_pred hhcCCCCCCCCCCChHHHHHHccCCCCCccEEE-eC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 501 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK-VR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 501 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-v~--~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
++.-.....-|+.+..++||+ ++.. |+ |.++|.++++++.. ..++|++|+++|.+
T Consensus 190 ---~~~~~~~~~~~~~~~f~a~Gw-----~~~~~vDGhD~~~i~~a~~~a~~-~~~~P~~I~~~T~k 247 (663)
T PRK12753 190 ---DGETEGWFTDDTAKRFEAYHW-----HVIHEIDGHDPQAIKEAILEAQS-VKDKPSLIICRTII 247 (663)
T ss_pred ---CCChhhhcChhHHHHHHHcCC-----eEEceeCCCCHHHHHHHHHHHHH-CCCCeEEEEEEEee
Confidence 221111123588999999999 7874 75 89999999998874 35799999999874
No 131
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.93 E-value=5.8e-09 Score=100.45 Aligned_cols=163 Identities=21% Similarity=0.308 Sum_probs=94.0
Q ss_pred cCHHHHHHHHHhhCC-CCCEEEecCCccccccc--------c--cc-------ccCC-CeeEeccCccchhhHHHHHHHH
Q 007800 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSWFNCQ--------K--LR-------LPEN-CGYEFQMQYGSIGWSVGATLGY 451 (589)
Q Consensus 391 i~~~~~~~~L~~~l~-~~~iiv~d~G~~~~~~~--------~--~~-------~~~~-~~~~~~~~~g~mG~~l~~aiGa 451 (589)
+...++.-+|..++. +.+.++.|+|--.+.-. + ++ +|+. -+-+-..+.|.-|.++++|+|+
T Consensus 44 LGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gm 123 (270)
T PF13292_consen 44 LGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGM 123 (270)
T ss_dssp HCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHH
Confidence 344567777888774 57889999995332210 0 11 1111 0122234456667899999999
Q ss_pred hhhc----CCCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhh----------hc-CCCCCCC----
Q 007800 452 AQAA----KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVE----------IH-DGPYNVI---- 510 (589)
Q Consensus 452 ala~----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~----------~~-~~~~~~~---- 510 (589)
+.|+ +++.||+++|||++. |.+..|-++...+-|++| |+|+++..+... +. ...|..+
T Consensus 124 a~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liV-ILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~ 202 (270)
T PF13292_consen 124 AVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIV-ILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDV 202 (270)
T ss_dssp HHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEE-EEEE-SBSSSB--SSHCCC-----------------
T ss_pred HHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEE-EEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHH
Confidence 9986 478999999999884 578899999999988555 566666665110 00 1111110
Q ss_pred ---------------------CCCChHHHHHHccCCCCCccEEEe---CCHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007800 511 ---------------------KNWDYTGLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFV 562 (589)
Q Consensus 511 ---------------------~~~d~~~la~a~G~~~~~~~~~~v---~~~~~l~~al~~a~~~~~~gp~viev~~ 562 (589)
... ...+.+.+|+ +|+-. .+.++|.++|+++.+ .+||+||+|.|
T Consensus 203 ~~~l~~~~~~~~~~~r~~~s~K~~-~~~lFe~LG~-----~Y~GPiDGHdl~~Li~~l~~~K~--~~gPvllHV~T 270 (270)
T PF13292_consen 203 KSLLKKIPPIEEFAKRIKESLKGF-SPNLFEELGF-----DYIGPIDGHDLEELIEVLENAKD--IDGPVLLHVIT 270 (270)
T ss_dssp ---------------------------CCCHHCT------EEEEEEETT-HHHHHHHHHHHCC--SSSEEEEEEE-
T ss_pred HHHHHhhhHHHHHHHHHhhhhhhh-hHHHHHHcCC-----eEEeccCCCCHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 011 1134677788 67665 489999999999875 89999999986
No 132
>PTZ00089 transketolase; Provisional
Probab=98.93 E-value=5.4e-09 Score=117.10 Aligned_cols=117 Identities=25% Similarity=0.267 Sum_probs=93.3
Q ss_pred CccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhh
Q 007800 437 QYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEV 500 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~ 500 (589)
..|++|.+++.|+|+|+|.+ +.+|+|++|||++.-. ...+..|..+++|.+++|+||+++.+.
T Consensus 114 ~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~- 192 (661)
T PTZ00089 114 TTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITID- 192 (661)
T ss_pred CCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccc-
Confidence 46889999999999999853 4569999999999874 666777788999988899999999872
Q ss_pred hhcCCCCCCCCCCChHHHHHHccCCCCCccEEEe---C-CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 501 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV---R-SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 501 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v---~-~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
++-.....-++.+..++||+ ++..| + |.++|.++++++.. ..++|++|+++|.+
T Consensus 193 ----~~~~~~~~~~~~~~f~a~G~-----~~i~v~dG~~D~~~l~~a~~~a~~-~~~~P~~I~~~T~k 250 (661)
T PTZ00089 193 ----GNTDLSFTEDVEKKYEAYGW-----HVIEVDNGNTDFDGLRKAIEEAKK-SKGKPKLIIVKTTI 250 (661)
T ss_pred ----cCcccccCccHHHHHHhcCC-----cEEEeCCCCCCHHHHHHHHHHHHh-cCCCcEEEEEEeee
Confidence 11111123588999999999 88888 3 79999999998874 23799999999863
No 133
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.93 E-value=2.4e-08 Score=105.53 Aligned_cols=161 Identities=15% Similarity=0.043 Sum_probs=125.6
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC-----CCCeEEecCchhHHHHhhhhhhhccCceEEEEeCC
Q 007800 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFT 98 (589)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-----~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~G 98 (589)
...++|+++++....+.||+.++|+|+++.+++.+.+.+. -+..+|..-+|.+|..||.|.+.+ |.-++..|||
T Consensus 10 ~~~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~a-GaRa~TaTS~ 88 (407)
T PRK09622 10 IEVWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAA-GGRVATATSS 88 (407)
T ss_pred eeecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhh-CcCEEeecCc
Confidence 3468999999999999999999999999999999988643 135789999999999999996655 5546667999
Q ss_pred cchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHH
Q 007800 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAIST 178 (589)
Q Consensus 99 pG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~ 178 (589)
||++-+.-++.-|...++|++++..++..... + ... .+-.|... .+.-........+++++.++..+||++
T Consensus 89 ~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~~----~---~i~-~d~~D~~~-~r~~g~ivl~p~s~QEa~d~~~~Af~l 159 (407)
T PRK09622 89 QGLALMVEVLYQASGMRLPIVLNLVNRALAAP----L---NVN-GDHSDMYL-SRDSGWISLCTCNPQEAYDFTLMAFKI 159 (407)
T ss_pred chHHHHhhHHHHHHHhhCCEEEEEeccccCCC----c---CCC-chHHHHHH-HhcCCeEEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999888888764311 0 111 11112222 133334456678999999999999999
Q ss_pred hHhc--CCcEEEEeCCCC
Q 007800 179 ALKE--SKPVYISISCNL 194 (589)
Q Consensus 179 a~~~--~gPV~i~iP~dv 194 (589)
|... +-||.+....-+
T Consensus 160 AE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 160 AEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred HHHhccCCCEEEEechhh
Confidence 9986 789999977664
No 134
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=98.91 E-value=9.5e-09 Score=95.47 Aligned_cols=115 Identities=22% Similarity=0.259 Sum_probs=90.1
Q ss_pred ccchhhHHHHHHHHhhhc----CCCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCC-
Q 007800 438 YGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVI- 510 (589)
Q Consensus 438 ~g~mG~~l~~aiGaala~----~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~- 510 (589)
.|++|.|++.|+|++++. .+.+|.+++|||-..- ....+++|++|+++-+|.++|-+.... ++.-.++
T Consensus 118 tGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~Ql-----dG~t~~i~ 192 (243)
T COG3959 118 TGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQL-----DGETEEIM 192 (243)
T ss_pred CCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCccc-----CCchhhcc
Confidence 467777777777776663 4678999999999987 488888999999998888887765543 4433333
Q ss_pred CCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007800 511 KNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVH 563 (589)
Q Consensus 511 ~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~~~~~gp~viev~~~ 563 (589)
+.-++.+.-+|||+ +..+|+ +.+++.++++++.. ..++|.+|-..+.
T Consensus 193 ~~~pL~~k~eAFGw-----~V~evdG~d~~~i~~a~~~~~~-~~~rP~~IIa~Tv 241 (243)
T COG3959 193 PKEPLADKWEAFGW-----EVIEVDGHDIEEIVEALEKAKG-SKGRPTVIIAKTV 241 (243)
T ss_pred CcchhHHHHHhcCc-----eEEEEcCcCHHHHHHHHHhhhc-cCCCCeEEEEecc
Confidence 55689999999999 899997 89999999999874 2349999987764
No 135
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.91 E-value=2.8e-08 Score=104.12 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=122.0
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC-----CCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCc
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-----~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~Gp 99 (589)
..++|++++++.....|++.++++|+++.+++.+.+.+. -+.+|+.+-+|.+|..||.|.+.+ |.-++..||||
T Consensus 5 ~~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~a-GaRa~TaTS~~ 83 (394)
T PRK08367 5 TVMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAA-GVRTFTATASQ 83 (394)
T ss_pred EeccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhh-CCCeEeeeccc
Confidence 358999999999999999999999999999999988652 357888888999999999996665 54456669999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHh
Q 007800 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (589)
Q Consensus 100 G~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a 179 (589)
|++-+.-.+.-|...++|+++.-+++.... ..+ +| +++ .| ....+..-.......+++++.++...||++|
T Consensus 84 Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~--i~---~d~--~D-~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lA 154 (394)
T PRK08367 84 GLALMHEVLFIAAGMRLPIVMAIGNRALSA-PIN--IW---NDW--QD-TISQRDTGWMQFYAENNQEALDLILIAFKVA 154 (394)
T ss_pred hHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCC--cC---cch--HH-HHhccccCeEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998887765542 111 11 011 11 1112222233334478999999999999999
Q ss_pred HhcC--CcEEEEeCCC
Q 007800 180 LKES--KPVYISISCN 193 (589)
Q Consensus 180 ~~~~--gPV~i~iP~d 193 (589)
...+ -||.+....-
T Consensus 155 E~~~~~~Pviv~~Dgf 170 (394)
T PRK08367 155 EDERVLLPAMVGFDAF 170 (394)
T ss_pred HHhCcCCCEEEEechh
Confidence 9754 7999987764
No 136
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=98.87 E-value=1.1e-08 Score=100.40 Aligned_cols=122 Identities=15% Similarity=0.127 Sum_probs=90.7
Q ss_pred eccCccchhhHHHHHHHHhhhcC---------CCcEEEEEcchhhc-c-cHHHHHHHHH-hCCC---eEEEEEeCCchhh
Q 007800 434 FQMQYGSIGWSVGATLGYAQAAK---------DKRVIACIGDGSFQ-V-TAQEISTMIR-CGQR---SIIFLINNGGYTI 498 (589)
Q Consensus 434 ~~~~~g~mG~~l~~aiGaala~~---------~~~vv~i~GDGsf~-~-~~~el~ta~~-~~l~---v~ivv~nN~~~~~ 498 (589)
....-+.+|...|.|+|+++|.. +.-+|++.|||+|. - .+.|-.+.+. .++| +++||.||+ |++
T Consensus 108 l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq-~g~ 186 (265)
T cd02016 108 LAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQ-IGF 186 (265)
T ss_pred ecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEE
Confidence 34556788999999999999852 34578999999973 4 4777777665 6888 666666665 877
Q ss_pred hhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCCC
Q 007800 499 EVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHKD 565 (589)
Q Consensus 499 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~~ 565 (589)
.-.... .....+..++|++||+ ++++|+ |++++.++.++|++ ++.+||+|||+.|.+.
T Consensus 187 sT~~~~----~~~~~~~~~~a~~~gi-----p~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~ 248 (265)
T cd02016 187 TTDPRD----SRSSPYCTDVAKMIGA-----PIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRR 248 (265)
T ss_pred EecHHH----hcccccHHHHHeecCC-----CEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 110000 0134478899999999 899996 89999988888887 5678999999999763
No 137
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.85 E-value=1.2e-07 Score=96.29 Aligned_cols=175 Identities=12% Similarity=0.125 Sum_probs=121.7
Q ss_pred CCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccc-----ccc---CCCeeEeccC--ccchhhHHHHHHHHhh----
Q 007800 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL-----RLP---ENCGYEFQMQ--YGSIGWSVGATLGYAQ---- 453 (589)
Q Consensus 388 ~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~-----~~~---~~~~~~~~~~--~g~mG~~l~~aiGaal---- 453 (589)
+..|.....++.|.+.+.++.+|+--+||+..|...+ ... ++..|..+.. .+-.|+|+-.|+=...
T Consensus 9 CaGCget~y~klltqlfG~r~iIaNatGCssI~gg~~P~tp~~~~~~g~Gpaw~nslFEdnAe~g~G~~~a~~~~r~~~~ 88 (365)
T cd03377 9 CAGCGETPYVKLLTQLFGDRMVIANATGCSSIYGGSAPTTPYTTNAKGRGPAWANSLFEDNAEFGLGMRLAVDQRRERAR 88 (365)
T ss_pred CCCCchHHHHHHHHHHhCCCeEEEecCCCceeecCCCCCCcceeccCCCCCccccccccchhHHHhHHHHHHHHHHHHHH
Confidence 4467788889999999999999999999987663221 110 1112222211 2334555544443220
Q ss_pred --------------------------------------------h-----------cC----CCcEEEEEcch-hhcccH
Q 007800 454 --------------------------------------------A-----------AK----DKRVIACIGDG-SFQVTA 473 (589)
Q Consensus 454 --------------------------------------------a-----------~~----~~~vv~i~GDG-sf~~~~ 473 (589)
. .. +..||++.||| ++-..+
T Consensus 89 ~~v~~~~~~~~~~~l~~~~~~wl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d~l~~~~v~v~gGDG~~ydIG~ 168 (365)
T cd03377 89 ELVQKLIEKIGDEELKTLLNAWLATEDDIEESRERVAKLKPLLAAEKDELAKELLSLADYLVKKSVWIIGGDGWAYDIGY 168 (365)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHccccHHHHHHHHHHHHHHHhccCcHHHHHHHhhhhhccccceEEEecchhhhccch
Confidence 1 11 25899999999 567799
Q ss_pred HHHHHHHHhCCCeEEEEEeCCchhhhh-hhcC----C------CC-CCCCCCChHHHHHHccCCCCCccEEEeC-CHHHH
Q 007800 474 QEISTMIRCGQRSIIFLINNGGYTIEV-EIHD----G------PY-NVIKNWDYTGLVNAIHNGEGKCWTAKVR-SEDEL 540 (589)
Q Consensus 474 ~el~ta~~~~l~v~ivv~nN~~~~~~~-~~~~----~------~~-~~~~~~d~~~la~a~G~~~~~~~~~~v~-~~~~l 540 (589)
+.|..+.+.+.||++||+||..|++.- |..+ + ++ ......|...+|.++|. .+|....+. ++.++
T Consensus 169 ~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~g~--~YVA~~s~~~~~~~~ 246 (365)
T cd03377 169 GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSYGN--VYVAQIALGANDNQT 246 (365)
T ss_pred hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHcCC--CEEEEEecccCHHHH
Confidence 999999999999999999999999821 1111 1 11 12356799999999998 333444454 89999
Q ss_pred HHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 541 TEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 541 ~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
.+++++|.+ .+||++|+|..++-.
T Consensus 247 ~~~i~eA~~--~~Gps~I~v~sPC~~ 270 (365)
T cd03377 247 LKAFREAEA--YDGPSLIIAYSPCIA 270 (365)
T ss_pred HHHHHHHhc--CCCCEEEEEEccCcc
Confidence 999999997 899999999998754
No 138
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=98.83 E-value=2.8e-08 Score=101.77 Aligned_cols=118 Identities=22% Similarity=0.209 Sum_probs=93.0
Q ss_pred CccchhhHHHHHHHHhhhcC-----------CCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 007800 437 QYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~-----------~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~ 503 (589)
..|++|.|++.|+|+|++.+ +.+|+|++|||.++- ....+..|.+++++-+++|+|++...+
T Consensus 116 sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qi----- 190 (386)
T cd02017 116 PTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRL----- 190 (386)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCcc-----
Confidence 46889999999999988743 567999999999988 366777888899988888888887766
Q ss_pred CCCCCC--CCCCChHHHHHHccCCCCCccEEEeC----------------------------------------------
Q 007800 504 DGPYNV--IKNWDYTGLVNAIHNGEGKCWTAKVR---------------------------------------------- 535 (589)
Q Consensus 504 ~~~~~~--~~~~d~~~la~a~G~~~~~~~~~~v~---------------------------------------------- 535 (589)
++.-.. ...-|+.+..++||+ +...|+
T Consensus 191 dG~t~~v~~~~e~l~~kf~AfGW-----~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~ 265 (386)
T cd02017 191 DGPVRGNGKIIQELEGIFRGAGW-----NVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFG 265 (386)
T ss_pred CCcccccccCchhHHHHHHhcCC-----EEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhcc
Confidence 332222 234589999999999 888884
Q ss_pred -------------------------CHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007800 536 -------------------------SEDELTEAMKTATGEQKDSLCFIEVFVHKD 565 (589)
Q Consensus 536 -------------------------~~~~l~~al~~a~~~~~~gp~viev~~~~~ 565 (589)
|.++|.+||+++.. ..++|++|-+.|-..
T Consensus 266 ~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~-~~~kPt~Iia~TikG 319 (386)
T cd02017 266 KYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE-HKGKPTVILAKTIKG 319 (386)
T ss_pred ccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh-CCCCCeEEEEeCeec
Confidence 78899999988763 246899999998653
No 139
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=98.82 E-value=4.3e-08 Score=83.79 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=125.8
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++..++|.+.|++.||+.++.+|.+....++.-+.+++.|..|-...|..+...+.|.+.+.++ +..+..|| ..|.
T Consensus 3 kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG--lGNs 80 (172)
T COG4032 3 KVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG--LGNS 80 (172)
T ss_pred ccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccC--cchH
Confidence 47889999999999999999999999999999988888889888888888888888897888778 77777666 5588
Q ss_pred HHHHHHhhh-cCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcC
Q 007800 105 LNAIAGAYS-ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (589)
Q Consensus 105 ~~~l~~A~~-~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (589)
+|+++.-+. -++|+++|.+.+.....+-..+ =.+| ....++++..---.+.+..|+++.+.|..|+..|....
T Consensus 81 iNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQ--VpmG----r~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s 154 (172)
T COG4032 81 INALASLYVTYKIPLLMLASHRGVLKEGIEAQ--VPMG----RALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS 154 (172)
T ss_pred HHHHHHHHHHhccchhhhhhccchhhcCCccc--cccc----hhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC
Confidence 888888665 4899999998877653322110 0111 11234445444457788899999999999999999888
Q ss_pred CcEEEEeCCCCC
Q 007800 184 KPVYISISCNLP 195 (589)
Q Consensus 184 gPV~i~iP~dv~ 195 (589)
.||-+-+...++
T Consensus 155 ~pv~vlls~~~W 166 (172)
T COG4032 155 RPVAVLLSPKYW 166 (172)
T ss_pred CceEEEechHHh
Confidence 898887765553
No 140
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.81 E-value=3.8e-08 Score=95.53 Aligned_cols=151 Identities=17% Similarity=0.076 Sum_probs=106.5
Q ss_pred HHHHcCCCEEEecCCcchHHHHHhhhc---CCCC--eEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHH
Q 007800 36 RLVEIGAKDVFSVPGDFNLTLLDHLIA---EPEL--NLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 110 (589)
Q Consensus 36 ~L~~~GV~~vfg~pG~~~~~l~~al~~---~~~i--~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~ 110 (589)
...+.|++.++++|+++..++++.+.+ +.+. +++++-+|.+|..||.|.+....|.. ..|+|||+.-+.-+|.-
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~aG~ra~-t~ts~~Gl~lm~e~l~~ 80 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAAGARAM-TATSGPGLNLMAEPLYW 80 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHTT--EE-EEEECCHHHHHCCCHHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhcCCceE-EeecCCcccccHhHHHH
Confidence 567899999999999999999998754 2344 99999999999999999776544444 57899999999999999
Q ss_pred hhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEe
Q 007800 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (589)
Q Consensus 111 A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~i 190 (589)
+...++|++++..+++....+-. ... +..| .-..+..-.-.....+++++.++...||++|....-||.+..
T Consensus 81 a~~~~~P~V~~~~~R~g~~~g~~-----~~~--~q~D-~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~ 152 (230)
T PF01855_consen 81 AAGTELPIVIVVVQRAGPSPGLS-----TQP--EQDD-LMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLF 152 (230)
T ss_dssp HHHTT--EEEEEEEB---SSSB-------SB---SHH-HHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHcCCCEEEEEEECCCCCCCCc-----CcC--ChhH-HHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 99999999999888766533211 111 1122 223334444566678999999999999999999899999998
Q ss_pred CCCCC
Q 007800 191 SCNLP 195 (589)
Q Consensus 191 P~dv~ 195 (589)
..-+.
T Consensus 153 Dg~~~ 157 (230)
T PF01855_consen 153 DGFLC 157 (230)
T ss_dssp ECCCC
T ss_pred chhhh
Confidence 87776
No 141
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=98.79 E-value=2.4e-08 Score=103.18 Aligned_cols=116 Identities=21% Similarity=0.080 Sum_probs=82.9
Q ss_pred cCccchhhHHHHHHHHhhhcC----CCcEEEEEcchhhccc-HHHHHH-HHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQVT-AQEIST-MIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~----~~~vv~i~GDGsf~~~-~~el~t-a~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~ 509 (589)
+..+.+|.++|.|+|+++|.+ +..+++++|||+..-. +.|-.+ |..+++|+++||.||+ |++.... . ..
T Consensus 135 ~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~-~aist~~-~---~~ 209 (362)
T PLN02269 135 GGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH-YGMGTAE-W---RA 209 (362)
T ss_pred ccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCC-EeccCch-h---hh
Confidence 456889999999999998853 5679999999997764 555555 4558999776666666 8872100 0 00
Q ss_pred CCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 510 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 510 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
....+|.+ +++++ ++++|+ |+.++..+++++.+ ++ +||+|||+.|.+
T Consensus 210 ~~~~~~~~--~~~~~-----p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR 260 (362)
T PLN02269 210 AKSPAYYK--RGDYV-----PGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYR 260 (362)
T ss_pred ccchHHHH--hhcCC-----CeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCc
Confidence 12234543 45666 788886 88899899988876 35 899999999865
No 142
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=3.2e-08 Score=105.46 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=94.2
Q ss_pred ccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhccc-HHHH-HHHHHhCCCeEEEEEeCCchhhhhh
Q 007800 438 YGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT-AQEI-STMIRCGQRSIIFLINNGGYTIEVE 501 (589)
Q Consensus 438 ~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~~~-~~el-~ta~~~~l~v~ivv~nN~~~~~~~~ 501 (589)
.|.+|.|++.|+|+++|.. +..+.||+|||+++-. .+|- .-|.+++|+-+|+++|++...+
T Consensus 115 TGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~Isi--- 191 (663)
T COG0021 115 TGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISI--- 191 (663)
T ss_pred cCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCcee---
Confidence 5899999999999999842 4689999999999995 4454 4566799999999999998877
Q ss_pred hcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC---CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 502 IHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR---SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 502 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~---~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
++.-....+-|..+-.+++|+ ++.++. |.+++.+||++|.. ..++|++|+++|-.
T Consensus 192 --DG~~~~~f~ed~~~RfeAyGW-----~vi~~~DG~D~e~I~~Ai~~Ak~-~~dkPtlI~~kTiI 249 (663)
T COG0021 192 --DGDTSLSFTEDVAKRFEAYGW-----NVIRVIDGHDLEAIDKAIEEAKA-STDKPTLIIVKTII 249 (663)
T ss_pred --ccCcccccchhHHHHHHhcCC-----eEEEecCCCCHHHHHHHHHHHHh-cCCCCeEEEEEeee
Confidence 443333345689999999999 777554 69999999999984 56799999999863
No 143
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=98.66 E-value=1.6e-07 Score=104.52 Aligned_cols=123 Identities=20% Similarity=0.277 Sum_probs=88.2
Q ss_pred CccchhhHHHHHHHHhhhc----CCCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhh---hc----
Q 007800 437 QYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVE---IH---- 503 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~---~~---- 503 (589)
..|+.|.+++.|+|+++|. ++..|+|++|||++.- ....+..|..+++|+ ++|+||++|++... +.
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~~~~~~~~~~l~ 187 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSISENVGALSNHLA 187 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccCCCchHHHHHHH
Confidence 4577888999999998885 4678999999999977 467777788899998 77888888887210 00
Q ss_pred ----CCCCCC-----------CCC-CC-hH--------------HHHHHccCCCCCccEE-EeC--CHHHHHHHHHHhhh
Q 007800 504 ----DGPYNV-----------IKN-WD-YT--------------GLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATG 549 (589)
Q Consensus 504 ----~~~~~~-----------~~~-~d-~~--------------~la~a~G~~~~~~~~~-~v~--~~~~l~~al~~a~~ 549 (589)
...|.. .++ .+ +. .+.++||+ .+. .|+ |.++|.++|+++..
T Consensus 188 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~-----~~~~~vDGhd~~~l~~al~~ak~ 262 (617)
T TIGR00204 188 QLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGF-----NYIGPVDGHDLLELIETLKNAKK 262 (617)
T ss_pred HhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCC-----cEEcccCCCCHHHHHHHHHHHhc
Confidence 001110 011 01 21 13788998 676 565 99999999998764
Q ss_pred cCCCCeEEEEEEcCCCCC
Q 007800 550 EQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 550 ~~~~gp~viev~~~~~~~ 567 (589)
.++|++|++.|.+..-
T Consensus 263 --~~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 263 --LKGPVFLHIQTKKGKG 278 (617)
T ss_pred --CCCCEEEEEEecCCCC
Confidence 6789999999987554
No 144
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.65 E-value=2.2e-07 Score=102.43 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=89.2
Q ss_pred cCccchhhHHHHHHHHhhhcC----CCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhh-h-hhhcCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTI-E-VEIHDGPY 507 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~----~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~-~-~~~~~~~~ 507 (589)
.+.|++|.+|++|+|+|+|.. +.+|++++|||++.- .+..+.+|.+++-|+++ |+|+++..+ . .+. ++.-
T Consensus 174 ~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nliv-IlddN~~~~~~~~q~-~g~~ 251 (641)
T PLN02234 174 FGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIV-ILNDNKQVSLPTANL-DGPT 251 (641)
T ss_pred ECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEE-EEECCCCCccccccc-CCCC
Confidence 456899999999999999863 568999999999977 47777788876766555 555555521 0 000 1100
Q ss_pred CC----------C------CCCChHHHHHHccCCCCCccEE-EeC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 508 NV----------I------KNWDYTGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 508 ~~----------~------~~~d~~~la~a~G~~~~~~~~~-~v~--~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
.. + ..-+...+.++||+ ++. .|+ |.++|.++|+++...+.++|++|.+.|.+..--
T Consensus 252 ~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~-----~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv 326 (641)
T PLN02234 252 QPVGALSCALSRLQSNCGMIRETSSTLFEELGF-----HYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGY 326 (641)
T ss_pred CCcccHHHHHHHhhcccccccCCHHHHHHHcCC-----EEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCc
Confidence 00 0 00256788999999 787 675 999999999987641235899999999875544
Q ss_pred HHH
Q 007800 569 KEL 571 (589)
Q Consensus 569 ~~~ 571 (589)
+.+
T Consensus 327 ~~~ 329 (641)
T PLN02234 327 PYA 329 (641)
T ss_pred chh
Confidence 433
No 145
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=98.56 E-value=3.5e-07 Score=97.06 Aligned_cols=168 Identities=20% Similarity=0.253 Sum_probs=107.7
Q ss_pred cCHHHHHHHHHhhCC-CCCEEEecCCcccccccc----------cc-------ccCCC-eeEeccCccchhhHHHHHHHH
Q 007800 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSWFNCQK----------LR-------LPENC-GYEFQMQYGSIGWSVGATLGY 451 (589)
Q Consensus 391 i~~~~~~~~L~~~l~-~~~iiv~d~G~~~~~~~~----------~~-------~~~~~-~~~~~~~~g~mG~~l~~aiGa 451 (589)
+...++.-+|..++. +.+.++.|+|--.+.-.. ++ +|+.. +-+-..+.|.-+.++++|+|+
T Consensus 48 LGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~ 127 (627)
T COG1154 48 LGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGM 127 (627)
T ss_pred cChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhH
Confidence 556667777888774 578888999943221110 11 11110 112223445667789999999
Q ss_pred hhhc----CCCcEEEEEcchhh--cccHHHHHHHH-HhCCCeEEEEEeCCchhhhh-----------hhcCCCCCCC---
Q 007800 452 AQAA----KDKRVIACIGDGSF--QVTAQEISTMI-RCGQRSIIFLINNGGYTIEV-----------EIHDGPYNVI--- 510 (589)
Q Consensus 452 ala~----~~~~vv~i~GDGsf--~~~~~el~ta~-~~~l~v~ivv~nN~~~~~~~-----------~~~~~~~~~~--- 510 (589)
+.|. .++.||+++|||++ .|.+..|.++. ..+-| .+||+|++...+.. ......|..+
T Consensus 128 A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~-~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~ 206 (627)
T COG1154 128 AKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSN-LIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREG 206 (627)
T ss_pred HHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCC-EEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHH
Confidence 8773 46889999999977 66788888887 34456 56677877777710 0001111110
Q ss_pred -----------------------CC-CChHHHHHHccCCCCCccEEEe---CCHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007800 511 -----------------------KN-WDYTGLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFVH 563 (589)
Q Consensus 511 -----------------------~~-~d~~~la~a~G~~~~~~~~~~v---~~~~~l~~al~~a~~~~~~gp~viev~~~ 563 (589)
.. +--..+.+.||+ +|+-. ++.++|..+|+.+.+ .+||+||+|.|.
T Consensus 207 ~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf-----~YiGPiDGHni~~Li~~Lk~~kd--~~gPvllHv~T~ 279 (627)
T COG1154 207 GKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGF-----NYIGPIDGHNLEELIPTLKNAKD--LKGPVLLHVVTK 279 (627)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCC-----eeECCcCCCCHHHHHHHHHHHhc--CCCCEEEEEEec
Confidence 00 111247888998 66554 489999999999976 899999999998
Q ss_pred CCC
Q 007800 564 KDD 566 (589)
Q Consensus 564 ~~~ 566 (589)
+..
T Consensus 280 KGK 282 (627)
T COG1154 280 KGK 282 (627)
T ss_pred CCC
Confidence 644
No 146
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=98.55 E-value=4.3e-07 Score=86.89 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=74.5
Q ss_pred CccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc-HHHHHHHH----HhCCCeEEEEEeCCchhhhhhhcCCCC--CC
Q 007800 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMI----RCGQRSIIFLINNGGYTIEVEIHDGPY--NV 509 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~~el~ta~----~~~l~v~ivv~nN~~~~~~~~~~~~~~--~~ 509 (589)
..|.+|++++.|+|+++.+++..|+|++|||.+.-. +...|.+. .+++.-++.|++|++|.+ .++. ..
T Consensus 60 ~~G~LG~gLs~A~G~a~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i-----~~pt~~~~ 134 (227)
T cd02011 60 EGGELGYSLSHAYGAVFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKI-----SNPTILAR 134 (227)
T ss_pred cccchhhHHHHHHHhhhcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcc-----cCCccccc
Confidence 358899999999999999899999999999997553 33334432 356777777888888987 2211 12
Q ss_pred CCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhh
Q 007800 510 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTAT 548 (589)
Q Consensus 510 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~ 548 (589)
...-++.+.+++||+ +...|+ |++++-+++.+++
T Consensus 135 ~~~e~l~~~~~~yG~-----~~~~VDG~D~~av~~~~a~a~ 170 (227)
T cd02011 135 ISHEELEALFRGYGY-----EPYFVEGDDPETMHQAMAATL 170 (227)
T ss_pred cCchhHHHHHHhCCC-----ceEEECCCCHHHHHHHHHHHH
Confidence 345689999999999 888886 6666655555444
No 147
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=98.52 E-value=5.7e-07 Score=101.58 Aligned_cols=117 Identities=20% Similarity=0.188 Sum_probs=93.7
Q ss_pred CccchhhHHHHHHHHhhhcC-----------CCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 007800 437 QYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~-----------~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~ 503 (589)
..|+||.|++.|+|+|++.+ +.+|+||+|||.+.- +...+..|.+++|+-+++|+|++...+
T Consensus 187 sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~ql----- 261 (889)
T TIGR03186 187 PTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRL----- 261 (889)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCcc-----
Confidence 46899999999999998632 578999999999988 477788889999999999999987765
Q ss_pred CCCCCC-CC-CCChHHHHHHccCCCCCccEEEe-----------------------------------------------
Q 007800 504 DGPYNV-IK-NWDYTGLVNAIHNGEGKCWTAKV----------------------------------------------- 534 (589)
Q Consensus 504 ~~~~~~-~~-~~d~~~la~a~G~~~~~~~~~~v----------------------------------------------- 534 (589)
+++-.. .. .-++++..++||+ +..+|
T Consensus 262 DG~t~~~~~~~e~l~~kf~a~GW-----~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~ 336 (889)
T TIGR03186 262 DGPVRGNGRIIDELESQFAGAGW-----NVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFG 336 (889)
T ss_pred CCccccccccchHHHHHHHhCCC-----EEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcC
Confidence 332221 11 3489999999999 77777
Q ss_pred ------------------------CCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 535 ------------------------RSEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 535 ------------------------~~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
+|++.|.+|+++|.+ ..++|+||.++|-.
T Consensus 337 ~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~-~~~~PTvIla~Tvk 389 (889)
T TIGR03186 337 QDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR-HEGRPTVILAKTMK 389 (889)
T ss_pred ccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh-CCCCCEEEEEEeee
Confidence 278899999988874 34699999999864
No 148
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.52 E-value=6.4e-07 Score=98.93 Aligned_cols=171 Identities=12% Similarity=0.134 Sum_probs=110.5
Q ss_pred CcCHHHHHHHHHhhCC-CCCEEEecCCcccccccc-------cc---------ccCC-CeeEeccCccchhhHHHHHHHH
Q 007800 390 PLRVNVLFKHIQDMLS-GDTAVIAETGDSWFNCQK-------LR---------LPEN-CGYEFQMQYGSIGWSVGATLGY 451 (589)
Q Consensus 390 ~i~~~~~~~~L~~~l~-~~~iiv~d~G~~~~~~~~-------~~---------~~~~-~~~~~~~~~g~mG~~l~~aiGa 451 (589)
.+...++.-+|..++. +.+.|+.|+|--.+.... +. +|+. -+-+-..+.|.-+.++++|+|+
T Consensus 122 nLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~~~f~~Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~ 201 (701)
T PLN02225 122 SFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGL 201 (701)
T ss_pred CccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCChhhcCccccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Confidence 4677788888888884 578889999943332111 11 1111 0122233446667789999999
Q ss_pred hhhc----CCCcEEEEEcchhh--cccHHHHHHHHHhCCCeEEEEEeCCchhhhhh--------hc-----------CCC
Q 007800 452 AQAA----KDKRVIACIGDGSF--QVTAQEISTMIRCGQRSIIFLINNGGYTIEVE--------IH-----------DGP 506 (589)
Q Consensus 452 ala~----~~~~vv~i~GDGsf--~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~--------~~-----------~~~ 506 (589)
+.|+ .++.||+++|||++ .|.+..|.++...+-| +|||+|++.+++... .. ...
T Consensus 202 a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~-livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~ 280 (701)
T PLN02225 202 AVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKI 280 (701)
T ss_pred HHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCC-EEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccch
Confidence 9985 36789999999988 5678899999888888 566777777777222 00 001
Q ss_pred CCC-----------CC---------------CCCh--H-HHHHHccCCCCCccEEEe---CCHHHHHHHHHHhhhcCCCC
Q 007800 507 YNV-----------IK---------------NWDY--T-GLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDS 554 (589)
Q Consensus 507 ~~~-----------~~---------------~~d~--~-~la~a~G~~~~~~~~~~v---~~~~~l~~al~~a~~~~~~g 554 (589)
|.. ++ ..-. . .+.+.||+ +|.-. ++.++|..+|+++.+...+|
T Consensus 281 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~-----~Y~GpvDGHdi~~Li~~l~~~k~~~~~~ 355 (701)
T PLN02225 281 FRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGL-----YYIGPVDGHNIEDLVCVLREVSSLDSMG 355 (701)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCC-----eEECccCCCCHHHHHHHHHHHHcCCCCC
Confidence 100 00 0000 1 36678888 66554 48999999999987511249
Q ss_pred eEEEEEEcCCCC
Q 007800 555 LCFIEVFVHKDD 566 (589)
Q Consensus 555 p~viev~~~~~~ 566 (589)
|+||+|.|.+..
T Consensus 356 PvlvHv~T~KGk 367 (701)
T PLN02225 356 PVLVHVITEENR 367 (701)
T ss_pred CEEEEEEecCCC
Confidence 999999997643
No 149
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=7.6e-07 Score=93.99 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=92.1
Q ss_pred cCccchhhHHHHHHHHhhhcC-----CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAAK-----DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~-----~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
-+.|++|.+|+.|+|+|++.+ +.+|+|++|||...-. ...+..|.+++++.+|+|+||+..++ ++.-.
T Consensus 115 v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~-----~g~t~ 189 (632)
T KOG0523|consen 115 VATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISI-----DGATS 189 (632)
T ss_pred eccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccC-----CCCCc
Confidence 345889999999999998753 5689999999999874 55667778899999999999998776 22222
Q ss_pred CCCCCChHH-HHHHccCCCCCccEEEeC--CHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTG-LVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~-la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~~~~~gp~viev~~~ 563 (589)
.-...|..+ -.++||+ +...|+ +.++|.+++.++.. ..++|+.|-..|-
T Consensus 190 ~~~~~dV~~~r~ea~g~-----~~~~V~~~d~d~i~ka~~~a~~-~k~kpt~i~~~t~ 241 (632)
T KOG0523|consen 190 LGFDEDVYQLRFEAFGW-----NVIIVDGGDVDEIRKAIGKAKS-VKGKPTAIKATTF 241 (632)
T ss_pred ccccccHHHHHHHHhCc-----eEEEEcCcCHHHHHHHHhhhhh-ccCCceeeeeeee
Confidence 224567766 7899999 777775 88999999999873 4678988888764
No 150
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=98.43 E-value=6.2e-07 Score=102.38 Aligned_cols=117 Identities=17% Similarity=0.131 Sum_probs=87.5
Q ss_pred ccchhhHHHHHHHHhhhcC----C------CcEEEEEcchhh-cc-cHHHHHHHHH-hCCC---eEEEEEeCCchhhhhh
Q 007800 438 YGSIGWSVGATLGYAQAAK----D------KRVIACIGDGSF-QV-TAQEISTMIR-CGQR---SIIFLINNGGYTIEVE 501 (589)
Q Consensus 438 ~g~mG~~l~~aiGaala~~----~------~~vv~i~GDGsf-~~-~~~el~ta~~-~~l~---v~ivv~nN~~~~~~~~ 501 (589)
.+.+|...|.|.|+++|.. + .-+|++.|||+| .- .+.|-.+.+. .++| +++||.||+ |++.-.
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq-~g~tT~ 391 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQ-IGFTTS 391 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEeeC
Confidence 3667888999999999852 3 467999999998 45 4777777555 7887 777777765 777210
Q ss_pred hcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 502 IHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 502 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
... .-......++|++||+ ++++|+ |++.+..+.+.|++ ++.+||+|||+.|.+
T Consensus 392 ~~~----~~s~~~~sd~Ak~~gi-----P~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR 449 (924)
T PRK09404 392 PPD----DRSTPYCTDVAKMVQA-----PIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYR 449 (924)
T ss_pred HHH----hccchhHHHHHeecCC-----cEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEec
Confidence 000 0123357889999999 899986 89999998888887 567899999999975
No 151
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.41 E-value=1.8e-06 Score=96.14 Aligned_cols=127 Identities=19% Similarity=0.263 Sum_probs=84.7
Q ss_pred cCccchhhHHHHHHHHhhhc----CCCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCch--------hhhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGY--------TIEVE 501 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~--------~~~~~ 501 (589)
...|+.|.+++.|+|+++|. .++.|++++|||++.- ....+..+..+++|+++||-||+.- ++...
T Consensus 141 ~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~ 220 (677)
T PLN02582 141 FGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPP 220 (677)
T ss_pred eccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCC
Confidence 45688899999999998885 3578999999999977 4677777888899977666666531 11000
Q ss_pred ----------h-cCCCCCC-----------CCCC--Ch-H---------------HHHHHccCCCCCccEE-Ee--CCHH
Q 007800 502 ----------I-HDGPYNV-----------IKNW--DY-T---------------GLVNAIHNGEGKCWTA-KV--RSED 538 (589)
Q Consensus 502 ----------~-~~~~~~~-----------~~~~--d~-~---------------~la~a~G~~~~~~~~~-~v--~~~~ 538 (589)
+ ..+.|.. ++.. ++ . .+.++||+ +|. .| +|.+
T Consensus 221 vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~-----~y~g~iDGHd~~ 295 (677)
T PLN02582 221 VGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL-----YYIGPVDGHNID 295 (677)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCC-----eEEeeeCCCCHH
Confidence 0 0111110 0000 01 0 25788999 765 45 4999
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007800 539 ELTEAMKTATGEQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 539 ~l~~al~~a~~~~~~gp~viev~~~~~~~ 567 (589)
+|.++|+++.....++|+||+|.|.+..-
T Consensus 296 ~L~~al~~~k~~~~~~P~vihv~T~KGkG 324 (677)
T PLN02582 296 DLVTILREVKSTKTTGPVLIHVVTEKGRG 324 (677)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEecCCCC
Confidence 99999999874112699999999986543
No 152
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=98.39 E-value=2.1e-06 Score=95.92 Aligned_cols=117 Identities=23% Similarity=0.202 Sum_probs=92.7
Q ss_pred CccchhhHHHHHHHHhhhcC-----------CCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 007800 437 QYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~-----------~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~ 503 (589)
..|+||.|++.|+|+|++.+ +++|+||+|||.+.- +...+..|.+++|+-+++|+|++...+
T Consensus 187 sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~ql----- 261 (885)
T TIGR00759 187 PTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRL----- 261 (885)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCcc-----
Confidence 45899999999999988643 578999999999988 477788889999999999999987765
Q ss_pred CCCCCCC-C-CCChHHHHHHccCCCCCccEEEe-----------------------------------------------
Q 007800 504 DGPYNVI-K-NWDYTGLVNAIHNGEGKCWTAKV----------------------------------------------- 534 (589)
Q Consensus 504 ~~~~~~~-~-~~d~~~la~a~G~~~~~~~~~~v----------------------------------------------- 534 (589)
+++-... . .-++++..++||+ +..+|
T Consensus 262 DG~v~~~~~i~e~le~~F~a~GW-----~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg 336 (885)
T TIGR00759 262 DGPVRGNGKIIQELESLFRGAGW-----NVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFN 336 (885)
T ss_pred CCccccccccchhHHHHHHhcCC-----EEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhcc
Confidence 3322211 1 2488999999999 77777
Q ss_pred ------------------------CCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 535 ------------------------RSEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 535 ------------------------~~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
+|+++|.+|++++.. ..++|+||-++|-+
T Consensus 337 ~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~-~~grPTvIlA~TvK 389 (885)
T TIGR00759 337 RTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQE-HKGQPTVILAKTIK 389 (885)
T ss_pred ccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHh-CCCCCEEEEEeeee
Confidence 278889999988774 24589999999865
No 153
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.37 E-value=1.1e-05 Score=83.85 Aligned_cols=162 Identities=19% Similarity=0.118 Sum_probs=125.7
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC---CCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcch
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~ 101 (589)
..++|+++++......|++.+.++|=++..++++.+.+. .+..++..-+|.+|..|+.|-+. +|.-+...|+|||+
T Consensus 4 ~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~-aGar~~TaTSg~Gl 82 (365)
T COG0674 4 VVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASY-AGARAFTATSGQGL 82 (365)
T ss_pred EeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHh-hCcceEeecCCccH
Confidence 358999999999999999999999999999999877542 37999999999999999999554 46656667999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhh-hcceeEEEEeCChhhHHHHHHHHHHHhH
Q 007800 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF-QAITCSQAVVNNLGDAHELIDTAISTAL 180 (589)
Q Consensus 102 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~tk~~~~v~~~~~~~~~l~~A~~~a~ 180 (589)
+=+..++.-|...++|+++.-.+++....+.- ..+ +..|..... ..+...... +.+++.+...+||++|.
T Consensus 83 ~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p-----~~~--dq~D~~~~r~~g~~~~~~~--s~qEa~d~t~~Af~iAe 153 (365)
T COG0674 83 LLMAEALGLAAGTETPLVIVVAQRPLPSTGLP-----IKG--DQSDLMAARDTGFPILVSA--SVQEAFDLTLLAFNIAE 153 (365)
T ss_pred HHHHHHHHHHHhccCCeEEEEeccCcCCCccc-----ccc--cHHHHHHHHccCceEEeec--cHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877633220 111 112222211 133343333 78999999999999999
Q ss_pred hcCCcEEEEeCCCCCC
Q 007800 181 KESKPVYISISCNLPG 196 (589)
Q Consensus 181 ~~~gPV~i~iP~dv~~ 196 (589)
+..-||.+.+..-+..
T Consensus 154 ~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 154 KVLTPVIVLLDGFLAS 169 (365)
T ss_pred HhcCCEEEeeccchhc
Confidence 9888998886544433
No 154
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=98.33 E-value=4.4e-06 Score=94.91 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=94.1
Q ss_pred CccchhhHHHHHHHHhhhcC-----------CCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 007800 437 QYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~-----------~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~ 503 (589)
..|+||.|++.|+|+++.++ +++|+||+|||.+.- +...+..|.+++|+-+++|+|++...+
T Consensus 201 ~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~l----- 275 (896)
T PRK13012 201 PTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRL----- 275 (896)
T ss_pred CCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccc-----
Confidence 46899999999999998754 378999999999988 577888889999999999999887655
Q ss_pred CCCCCCCC--CCChHHHHHHccCCCCCccEEEe--------------------------C--------------------
Q 007800 504 DGPYNVIK--NWDYTGLVNAIHNGEGKCWTAKV--------------------------R-------------------- 535 (589)
Q Consensus 504 ~~~~~~~~--~~d~~~la~a~G~~~~~~~~~~v--------------------------~-------------------- 535 (589)
+++-.... .-++++..++||+ +..+| +
T Consensus 276 DG~v~~~~~~~~~l~~~f~a~GW-----~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~ 350 (896)
T PRK13012 276 DGPVRGNGRIIQELEALFRGAGW-----NVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFG 350 (896)
T ss_pred cCccccccccchHHHHHHHhCCC-----EEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhcc
Confidence 33222211 2489999999999 88887 4
Q ss_pred -------------------------CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 536 -------------------------SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 536 -------------------------~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
|+++|.+|++++.. ..++|+||-++|-+
T Consensus 351 ~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~-~~~~PtvIla~Tvk 403 (896)
T PRK13012 351 QDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR-HKGQPTVILAKTKK 403 (896)
T ss_pred ccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh-CCCCCEEEEEEeee
Confidence 88899999988874 35689999999865
No 155
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=98.31 E-value=2.9e-06 Score=96.56 Aligned_cols=124 Identities=17% Similarity=0.142 Sum_probs=90.4
Q ss_pred eEeccCccchhhHHHHHHHHhhhcC----------CCcEEEEEcchhh-cc-cHHHHHHHHH-hCCCe--EEEEEeCCch
Q 007800 432 YEFQMQYGSIGWSVGATLGYAQAAK----------DKRVIACIGDGSF-QV-TAQEISTMIR-CGQRS--IIFLINNGGY 496 (589)
Q Consensus 432 ~~~~~~~g~mG~~l~~aiGaala~~----------~~~vv~i~GDGsf-~~-~~~el~ta~~-~~l~v--~ivv~nN~~~ 496 (589)
+-....-+.++...|.+.|.+.|.. +.-+|++.|||+| .- .+.|-.+.+. .++|+ +|+|+.|++|
T Consensus 308 ~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqy 387 (929)
T TIGR00239 308 LALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQI 387 (929)
T ss_pred eeecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCE
Confidence 3344556788999999999999852 2457999999998 45 4777777555 89998 4555555568
Q ss_pred hhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 497 TIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 497 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
++.-.... .-......+.|++||+ ++++|+ |++.+..+++.|++ ++.+||+|||+.|.+
T Consensus 388 g~tT~~~~----~~s~~~~sd~Ak~ygi-----P~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR 450 (929)
T TIGR00239 388 GFTTNPLD----ARSTPYCSDLAKMIQA-----PIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYR 450 (929)
T ss_pred EEEEcHHH----hcCccCHHHHheecCC-----CEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 87210000 0023357789999999 899986 89999999888887 557899999999964
No 156
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=98.25 E-value=5.6e-06 Score=72.48 Aligned_cols=124 Identities=21% Similarity=0.270 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCC------CC-----------CCceeeec
Q 007800 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE------HH-----------PHFIGTYW 288 (589)
Q Consensus 226 ~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~------~~-----------pl~~G~~~ 288 (589)
+-++.++++|+||++++|..+.+.+..|.+.+++|+.++|+++|..+.+.+-+ .| |.+.|.
T Consensus 26 ~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~-- 103 (170)
T COG1880 26 EVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGF-- 103 (170)
T ss_pred HHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCc--
Confidence 45678999999999999999998788899999999999999999876543322 11 112111
Q ss_pred CCCCCHHHHHHhhhcCEEEEeCCCcCCccc--ccccccCCCCceEEEcCCceeecCCCccccccHHHHHHHHHHHh
Q 007800 289 GAVSSSFCGEIVESADAYVFVGPIFNDYSS--VGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKL 362 (589)
Q Consensus 289 g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~--~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~~~~~~l~~L~~~l 362 (589)
-|+ .+.|+||++|+...-... .+...|. +.+.|.||.....-. ...++.++=+++++.|-+.+
T Consensus 104 --dg~-------g~yDlviflG~~~yy~sq~Ls~lKhFs-~i~tiaId~~Y~pnA-d~SFpNl~kde~~~~L~ell 168 (170)
T COG1880 104 --DGN-------GNYDLVIFLGSIYYYLSQVLSGLKHFS-NIKTIAIDRYYQPNA-DYSFPNLSKDEYLAYLDELL 168 (170)
T ss_pred --CCC-------CCcceEEEEeccHHHHHHHHHHhhhhh-cceEEEeccccCcCc-cccCCCcCHHHHHHHHHHHh
Confidence 111 368999999986421111 1111222 334455544332110 22355555566777766554
No 157
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=98.23 E-value=9.2e-06 Score=92.01 Aligned_cols=117 Identities=26% Similarity=0.237 Sum_probs=94.0
Q ss_pred CccchhhHHHHHHHHhhhcC-----------CCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 007800 437 QYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~-----------~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~ 503 (589)
..++||.|++.|+|++++++ +++|+||+|||.+.- +...+..|.+++|+-+++|+|.+...+
T Consensus 193 ~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~l----- 267 (891)
T PRK09405 193 PTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRL----- 267 (891)
T ss_pred CccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCccc-----
Confidence 35889999999999999865 578999999999988 578888899999999999999887655
Q ss_pred CCCCCCC-C-CCChHHHHHHccCCCCCccEEEe--------------------------C--------------------
Q 007800 504 DGPYNVI-K-NWDYTGLVNAIHNGEGKCWTAKV--------------------------R-------------------- 535 (589)
Q Consensus 504 ~~~~~~~-~-~~d~~~la~a~G~~~~~~~~~~v--------------------------~-------------------- 535 (589)
+++-... . .-++++..++||+ +...| +
T Consensus 268 DG~v~~~~~~~~~l~~~f~a~GW-----~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg 342 (891)
T PRK09405 268 DGPVRGNGKIIQELEGIFRGAGW-----NVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFG 342 (891)
T ss_pred CCccccccccchhHHHHHhhCCC-----EEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcC
Confidence 3322211 1 2489999999999 78877 2
Q ss_pred -------------------------CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 536 -------------------------SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 536 -------------------------~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
|+++|.+|++++.+ ..++|+||-++|-+
T Consensus 343 ~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~-~~~~PtvIia~Tvk 395 (891)
T PRK09405 343 KYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVE-HKGQPTVILAKTIK 395 (891)
T ss_pred CCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHh-CCCCCEEEEEecee
Confidence 78899999988874 34789999999864
No 158
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=98.18 E-value=4.6e-06 Score=81.89 Aligned_cols=118 Identities=19% Similarity=0.105 Sum_probs=80.3
Q ss_pred ccCccchhhHHHHHHHHhhhcC----CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 435 QMQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 435 ~~~~g~mG~~l~~aiGaala~~----~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
-++.|..|..+|.+.|+++|.+ +.-++++-|||+..-. +..+..|.-++||+++| +.|+.|||.-. ...
T Consensus 161 yGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFv-CENN~yGMGTs----~~R 235 (394)
T KOG0225|consen 161 YGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFV-CENNHYGMGTS----AER 235 (394)
T ss_pred cCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEE-EccCCCccCcc----hhh
Confidence 3677888999999999999853 4568999999999874 44455555689996655 55556988200 001
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCH--HHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSE--DELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~--~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
....+||-+-.. | + ++..|+-. -.++++.+.|.+ .+.+||.|+|..|-+
T Consensus 236 asa~teyykRG~-y-i-----PGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYR 288 (394)
T KOG0225|consen 236 ASASTEYYKRGD-Y-I-----PGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYR 288 (394)
T ss_pred hhcChHHHhccC-C-C-----CceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeee
Confidence 113456655442 2 4 78888844 455677777765 346899999999864
No 159
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.11 E-value=4.5e-05 Score=90.59 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=112.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhh---hcC--CC-----CeEEecCchhHHHHhhhhhhhccCceEEEE
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHL---IAE--PE-----LNLVGCCNELNAGYAADGYARSRGVGACVV 95 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al---~~~--~~-----i~~v~~~hE~~A~~~A~gyar~tg~~v~~~ 95 (589)
.|+|+++++..... |++.+|++|=++..++.+.+ ... .+ .+++..-+|.+|+.|+.|.+.. |.-+...
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~~a-Gara~T~ 80 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGALQT-GALTTTF 80 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHhhc-CCCEEEe
Confidence 58999999999988 99999999977777777766 321 11 2899999999999999996654 5544567
Q ss_pred eCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHH
Q 007800 96 TFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTA 175 (589)
Q Consensus 96 t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A 175 (589)
|+|+|++-+...|..+...++|+++...++.....+-. ..+ +..|. -..+...--.....+++++.++...|
T Consensus 81 TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~-----i~~--dh~Dv-~~~R~~G~ivl~s~svQEa~D~al~A 152 (1165)
T TIGR02176 81 TASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALS-----IFG--DHQDV-MAARQTGFAMLASSSVQEVMDLALVA 152 (1165)
T ss_pred cChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCc-----cCC--CchHH-HHhhcCCeEEEeCCCHHHHHHHHHHH
Confidence 99999999999998777779999999988765421111 111 11221 11122221223346788899999999
Q ss_pred HHHhHhcCCcEEEEeC
Q 007800 176 ISTALKESKPVYISIS 191 (589)
Q Consensus 176 ~~~a~~~~gPV~i~iP 191 (589)
+++|...+-||.+-..
T Consensus 153 ~~lAe~~~~Pvi~~~D 168 (1165)
T TIGR02176 153 HLATIEARVPFMHFFD 168 (1165)
T ss_pred HHHHHhcCCCEEEEec
Confidence 9999877778776654
No 160
>PRK05261 putative phosphoketolase; Provisional
Probab=98.08 E-value=1.8e-05 Score=88.50 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=82.1
Q ss_pred ccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc-HHHHHHHH----HhCCCeEEEEEeCCchhhhhhhcCCCC--CCC
Q 007800 438 YGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMI----RCGQRSIIFLINNGGYTIEVEIHDGPY--NVI 510 (589)
Q Consensus 438 ~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~~el~ta~----~~~l~v~ivv~nN~~~~~~~~~~~~~~--~~~ 510 (589)
.|.+|++++.|+|+++.+++..|+|++|||.+.-. +...|.+. .+++.-++.|+++++|.+ .++- ...
T Consensus 141 ~G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~I-----s~pt~~~~~ 215 (785)
T PRK05261 141 GGELGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKI-----ANPTILARI 215 (785)
T ss_pred CCchhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcC-----CCCcccccc
Confidence 58899999999999999999999999999996543 22333322 245666667777788887 2211 112
Q ss_pred CCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh---c----------CC---CCeE--EEEEEcCC
Q 007800 511 KNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG---E----------QK---DSLC--FIEVFVHK 564 (589)
Q Consensus 511 ~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~---~----------~~---~gp~--viev~~~~ 564 (589)
..-++.+..++||+ +.+.|+ |++++.++++++++ . .. .+|. +|.+++.+
T Consensus 216 ~~e~l~~rf~g~Gw-----~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~k 284 (785)
T PRK05261 216 SDEELEALFRGYGY-----EPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPK 284 (785)
T ss_pred CcHhHHHHHHHCCC-----eeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCc
Confidence 34589999999999 788886 77776655333222 0 12 5788 99999876
No 161
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.78 E-value=0.00061 Score=81.14 Aligned_cols=105 Identities=11% Similarity=0.141 Sum_probs=81.6
Q ss_pred CcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhh-hhcC----C------CC-CCCCCCChHHHHHHccC
Q 007800 458 KRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEV-EIHD----G------PY-NVIKNWDYTGLVNAIHN 524 (589)
Q Consensus 458 ~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~-~~~~----~------~~-~~~~~~d~~~la~a~G~ 524 (589)
+.||++.||| ++-..++.|..+.+.|.|+++||+||..|+... |... + +. ....+.|...+|.++|.
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~g~ 1031 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTYGY 1031 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHCCC
Confidence 4699999999 567789999999999999999999999999821 1110 1 11 12356799999999998
Q ss_pred CCCCccEEEeC-CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 525 GEGKCWTAKVR-SEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 525 ~~~~~~~~~v~-~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
.+|....+. ++.++.+++++|.. .+||++|++..++-.
T Consensus 1032 --~yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~pC~~ 1070 (1165)
T TIGR02176 1032 --VYVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSPCIN 1070 (1165)
T ss_pred --CEEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECCCcc
Confidence 233333443 79999999999987 899999999998753
No 162
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=97.39 E-value=0.00016 Score=70.49 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=74.0
Q ss_pred ccchhhHHHHHHHHhhhcC-----CCcEEEEEcchhhccc-H-HHHHHHHHhCCCeEEEEEeCCchhhh---hhhcCCCC
Q 007800 438 YGSIGWSVGATLGYAQAAK-----DKRVIACIGDGSFQVT-A-QEISTMIRCGQRSIIFLINNGGYTIE---VEIHDGPY 507 (589)
Q Consensus 438 ~g~mG~~l~~aiGaala~~-----~~~vv~i~GDGsf~~~-~-~el~ta~~~~l~v~ivv~nN~~~~~~---~~~~~~~~ 507 (589)
.+.+-..+|-|+|++.+.+ ++-+|++.|||+.--. . ..|.-|+-...|+++|+ -|+||.|. ...+.+.
T Consensus 192 ssplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~C-RNNG~AISTptseQyr~D- 269 (432)
T KOG1182|consen 192 SSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFC-RNNGWAISTPTSEQYRGD- 269 (432)
T ss_pred cchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEE-cCCCeeeccccHHHhcCC-
Confidence 4556777888888877643 4679999999988663 3 34445667899966655 45569881 1111111
Q ss_pred CCCCCCChHHHHHHccCCCCCccEEEeCCHHH--HHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 508 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDE--LTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 508 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~--l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
-+.--..++|+ ...+|+..+. +-.|.++|.+ ...++|+|||.++-+
T Consensus 270 ------GIa~kG~aYGi-----~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYR 319 (432)
T KOG1182|consen 270 ------GIAVKGPAYGI-----RSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYR 319 (432)
T ss_pred ------ceEEeccccce-----EEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhh
Confidence 12222357898 8999985554 3456666654 347799999999753
No 163
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=97.36 E-value=0.00026 Score=64.53 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEcc-CCccCCCCCCCCceeeecCCCCCHHHHHHh--
Q 007800 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP-SGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (589)
Q Consensus 224 ~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~-~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l-- 300 (589)
.++.++.+|++||||++++|..+-+....+.........++|++.|. ..+++ ++..|-+ +.+ .....+
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~-~d~~~ky-~~~-------~~~~~l~~ 93 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGM-PDYRPKY-PKI-------EPENELND 93 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCH-CSSGCCE--HH-------HHHHHCCS
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccc-ccccccc-ccc-------cHHHhcCC
Confidence 34788999999999999999999875545666667778899999987 44544 2222211 111 122222
Q ss_pred ---------hhcCEEEEeCCCcC--CcccccccccCCCCceEEEcCCceeecCCCccccccHHH--HHHHHHHH
Q 007800 301 ---------ESADAYVFVGPIFN--DYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMAD--FLSALAKK 361 (589)
Q Consensus 301 ---------~~aD~vl~lG~~~~--~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~~~~~--~l~~L~~~ 361 (589)
.+.|++|++|...- +........+.+..+++.++.....=. ...+++++.+. .++.|.+.
T Consensus 94 p~w~g~~g~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~~yhpnA-~~Sf~n~~~e~~~~~~~L~e~ 166 (167)
T PF02552_consen 94 PHWNGTDGHGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDRYYHPNA-DMSFPNLSKEKLEWLEYLDEL 166 (167)
T ss_dssp TT--TTTSS---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SSS--TTS-SEEE---GHHHHHHHHHHHHH
T ss_pred CCCCccccCCcccEEEEecchHHHHHHHHHHHhccCCceEEEEeccccCCCc-ceecCCCCHHHHHHHHHHHhh
Confidence 37899999997532 111111222345556676665443210 12355555555 66666543
No 164
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.91 E-value=0.0087 Score=54.59 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=78.1
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEc-chhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHH
Q 007800 442 GWSVGATLGYAQAAKDKRVIACIG-DGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVN 520 (589)
Q Consensus 442 G~~l~~aiGaala~~~~~vv~i~G-DGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~ 520 (589)
..+..+|.|.+.+. +++.++++. ..++....+.|.++...++|+++|.-+-....... .. ....|...+.+
T Consensus 44 ~~A~~~A~g~~~~~-~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~~~~~~----~~---~q~~d~~~~~~ 115 (155)
T cd07035 44 QGAVGMADGYARAT-GKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGR----GA---FQEIDQVALFR 115 (155)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCccccccC----Cc---ccccCHHHHHH
Confidence 35667788888875 445555555 77888889999999999999988887766544310 01 12357778888
Q ss_pred HccCCCCCccEEEeCCHHHHHHHHHHhhh--cCC-CCeEEEEEE
Q 007800 521 AIHNGEGKCWTAKVRSEDELTEAMKTATG--EQK-DSLCFIEVF 561 (589)
Q Consensus 521 a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~-~gp~viev~ 561 (589)
.+-. ...++++++++.+.+++++. ... +||+.|++.
T Consensus 116 ~~~~-----~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 116 PITK-----WAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HHhc-----eEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 8765 78899999999888888876 223 689999874
No 165
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.87 E-value=0.0099 Score=55.33 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=86.8
Q ss_pred CCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 007800 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (589)
Q Consensus 429 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~ 507 (589)
..+++....-. .+..+|-|.+.+. +++.++++-=| ++.-.+..|.++...++|+++|.-+-..+...+ +
T Consensus 39 ~i~~i~~~~E~---~A~~~A~g~ar~~-g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~----~-- 108 (172)
T PF02776_consen 39 GIRFIPVRHEQ---GAAFMADGYARAT-GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGR----G-- 108 (172)
T ss_dssp TSEEEE-SSHH---HHHHHHHHHHHHH-SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTT----T--
T ss_pred ceeeecccCcc---hhHHHHHHHHHhh-ccceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcc----c--
Confidence 44566554433 4556777887775 67777776655 566679999999999999999888777665421 1
Q ss_pred CCCC-CCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 508 NVIK-NWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 508 ~~~~-~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
.+. ..|...+++.+.- ...++++++++...+++|+. ....||+.|++..|
T Consensus 109 -~~q~~~d~~~~~~~~~k-----~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 109 -AFQQEIDQQSLFRPVTK-----WSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp -STTSSTHHHHHHGGGSS-----EEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred -ccccchhhcchhccccc-----hhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 112 4588999999987 88999999998888888875 35789999999876
No 166
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.77 E-value=0.012 Score=54.36 Aligned_cols=119 Identities=10% Similarity=-0.024 Sum_probs=82.3
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEc-chhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIG-DGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~G-DGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.++++- ..++...+..+.+|...++|+++|.-+-...... .+
T Consensus 39 i~~v~~rhE~---~A~~mA~gyar~t-g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~~----~~--- 107 (164)
T cd07039 39 IEFIQVRHEE---AAAFAASAEAKLT-GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELG----TD--- 107 (164)
T ss_pred CeEEEeCCHH---HHHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccccC----CC---
Confidence 3455544433 3344566777764 566665554 4466667899999999999999888655533211 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
.+..+|...+++.+-- +..++++++++.+++++|+. ....||+.|++..|-
T Consensus 108 ~~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~dv 160 (164)
T cd07039 108 YFQEVDLLALFKDVAV-----YNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGDV 160 (164)
T ss_pred CCcccCHHHHHHHhhc-----EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence 1344688899999876 88999999998888888875 235699999998773
No 167
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=96.46 E-value=0.013 Score=58.86 Aligned_cols=109 Identities=26% Similarity=0.342 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceee-----ecCCCCCH
Q 007800 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGT-----YWGAVSSS 294 (589)
Q Consensus 220 ~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~-----~~g~~~~~ 294 (589)
..++++++|++.|.+||||+++-+... ..++.+.-.+|+|++|+-+ +.+-..+.|. .......-
T Consensus 64 ~~deAie~Aa~ILv~aKrPllyg~s~t-scEA~~~gielaE~~gavi----------D~~asvchGp~~~alqe~g~p~~ 132 (429)
T COG1029 64 DYDEAIEKAAEILVNAKRPLLYGWSST-SCEAQELGIELAEKLGAVI----------DSNASVCHGPSVLALQEAGKPTA 132 (429)
T ss_pred cHHHHHHHHHHHHHhccCceEeccccc-hHHHHHHHHHHHHHhCcEe----------cCCCccccchHHHHHHhcCCccc
Confidence 457899999999999999999866544 3478899999999999633 3333333332 11111111
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccc---cccccC---------CCCceEEEcCCcee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSV---GYSLLI---------KKEKAIIVQPHRVT 339 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~---~~~~~~---------~~~~~i~id~d~~~ 339 (589)
...+.=.++|+|+.+|+...+.-.. .|+.|+ .+.++|.||+-+..
T Consensus 133 TlgevKNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~ 189 (429)
T COG1029 133 TLGEVKNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTA 189 (429)
T ss_pred chhhhcccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCc
Confidence 2234446899999999865332211 111111 24478889886543
No 168
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=96.20 E-value=0.21 Score=45.62 Aligned_cols=149 Identities=19% Similarity=0.114 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcchHHHHHhhhc-CCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHH
Q 007800 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA-EPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNA 107 (589)
Q Consensus 30 a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~ 107 (589)
++.|.+.+++..= .++.-.+-.....++.+.+ .++=-+-....|++.+.+|.|.|.. |. .++.. ...=...+...
T Consensus 4 ~~~l~~~~~~~~~-~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~-G~~pi~~~-~~~f~~ra~dq 80 (156)
T cd07033 4 GEALLELAKKDPR-IVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALH-GLKPFVST-FSFFLQRAYDQ 80 (156)
T ss_pred HHHHHHHHhhCCC-EEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHC-CCeEEEEE-CHHHHHHHHHH
Confidence 4556666655533 3333222111122333322 2332345678999999999999976 45 55554 44444556677
Q ss_pred HH-HhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHhcCCc
Q 007800 108 IA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKP 185 (589)
Q Consensus 108 l~-~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~gP 185 (589)
|. ++-..+.|++++........ +.+..-| +......+++.+-.. -..+.+++++..+++.|++ .++|
T Consensus 81 i~~~~a~~~~pv~~~~~~~g~~~-~~~G~tH------~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~----~~~P 149 (156)
T cd07033 81 IRHDVALQNLPVKFVGTHAGISV-GEDGPTH------QGIEDIALLRAIPNMTVLRPADANETAAALEAALE----YDGP 149 (156)
T ss_pred HHHHHhccCCCeEEEEECCcEec-CCCCccc------chHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh----CCCC
Confidence 77 77788999999987543321 1111222 233456777776543 3456677777766666664 3579
Q ss_pred EEEEeCC
Q 007800 186 VYISISC 192 (589)
Q Consensus 186 V~i~iP~ 192 (589)
+||.+|.
T Consensus 150 ~~irl~~ 156 (156)
T cd07033 150 VYIRLPR 156 (156)
T ss_pred EEEEeeC
Confidence 9999874
No 169
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.15 E-value=0.049 Score=49.33 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=70.0
Q ss_pred hHHHHHHHHhhhcCCCcEEEEE-cchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACI-GDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~-GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+..+|.|++.+.. +.+++.+ |.|. ......|.++...++|+++++-+.+..... .+. ....|...+++.
T Consensus 46 ~a~~~A~G~a~~~~-~~v~~~~~gpg~-~~~~~~l~~a~~~~~Pvl~i~~~~~~~~~~----~~~---~q~~~~~~~~~~ 116 (154)
T cd06586 46 GAAGAAAGYARAGG-PPVVIVTSGTGL-LNAINGLADAAAEHLPVVFLIGARGISAQA----KQT---FQSMFDLGMYRS 116 (154)
T ss_pred HHHHHHHHHHHhhC-CEEEEEcCCCcH-HHHHHHHHHHHhcCCCEEEEeCCCChhhhc----cCc---ccccCHHHHHHH
Confidence 56678889888753 4445555 6664 355778888888999977776554433221 111 244577788888
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEE
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVF 561 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~ 561 (589)
+.. ....+.+.+++.+.+.+++. ....||++|++.
T Consensus 117 ~~~-----~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 117 IPE-----ANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred hhh-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 876 66778888877777776664 234789999874
No 170
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.00 E-value=0.06 Score=49.53 Aligned_cols=110 Identities=9% Similarity=0.000 Sum_probs=73.8
Q ss_pred hHHHHHHHHhhhcCCCcEEEEE-cchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCC--CCC-ChHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACI-GDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVI--KNW-DYTGL 518 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~-GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~--~~~-d~~~l 518 (589)
.+.-+|-|.+.+. ++.+|++ ...++.-....|.+|...+.|+++|.-+.......+.. ...... ... |...+
T Consensus 46 ~A~~mA~gyar~t--~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~--~~~~~~~~~~~~d~~~~ 121 (162)
T cd07038 46 NAGYAADGYARVK--GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGL--LLHHTLGDGDFDVFLKM 121 (162)
T ss_pred HHHHHHHHHHHhh--CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCcccccccc--ceeecccccchHHHHHH
Confidence 4556677877775 3655555 55677778999999999999999988765532211000 000001 112 46788
Q ss_pred HHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEE
Q 007800 519 VNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVF 561 (589)
Q Consensus 519 a~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~ 561 (589)
++.+.- ...++.+++++...+++|+. ...+||+.||++
T Consensus 122 ~~~~tk-----~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 122 FEEITC-----AAARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred HHhhee-----EEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 888876 78889999998888888876 234589999874
No 171
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=95.66 E-value=0.012 Score=59.59 Aligned_cols=97 Identities=13% Similarity=0.209 Sum_probs=58.0
Q ss_pred ccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc-HHHHHHHHHh-C---CCeEEEEEeCCchhhhhhhcCCCCCCCCC
Q 007800 438 YGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMIRC-G---QRSIIFLINNGGYTIEVEIHDGPYNVIKN 512 (589)
Q Consensus 438 ~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~~el~ta~~~-~---l~v~ivv~nN~~~~~~~~~~~~~~~~~~~ 512 (589)
.|-+|++++.|.|+++-+|+..|+|++|||.+--. ...=|.+.++ + --.++=|+.=+||.|.. ...+.++++
T Consensus 139 GGELGYaLshA~GA~~DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~---pTil~r~~~ 215 (379)
T PF09364_consen 139 GGELGYALSHAFGAVFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISN---PTILARMSD 215 (379)
T ss_dssp -SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSS---B-HHHHS-H
T ss_pred CcchhhHHHHHhhcccCCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCccccC---CeEeeecCH
Confidence 36789999999999999999999999999998765 3333433332 1 12333344444677610 011122345
Q ss_pred CChHHHHHHccCCCCCccEEEeC--CHHHHHH
Q 007800 513 WDYTGLVNAIHNGEGKCWTAKVR--SEDELTE 542 (589)
Q Consensus 513 ~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~ 542 (589)
-++..+.+++|. +-+.|+ |++++..
T Consensus 216 ~eL~~lf~G~Gy-----~p~~Veg~dp~~~h~ 242 (379)
T PF09364_consen 216 EELEALFRGYGY-----EPIFVEGDDPADMHQ 242 (379)
T ss_dssp HHHHHHHHHTTE-----EEEEEE---HHHHHH
T ss_pred HHHHHHHHhCCC-----eEEEEecCCHHHHHH
Confidence 578899999998 666665 4555533
No 172
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.53 E-value=0.19 Score=45.96 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHH-HhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCCh-HHH
Q 007800 441 IGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMI-RCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDY-TGL 518 (589)
Q Consensus 441 mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~-~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~-~~l 518 (589)
-+.+.++|.|+.++ .+++++++.+=| +...++.|.++. .+++|+++|+-.-+.++-... +. ...-.+ ..+
T Consensus 43 ee~aa~~aAg~~~~-~~~~~v~~~~sG-~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~---~q---~~~g~~~~~~ 114 (157)
T TIGR03845 43 EEEGVGICAGAYLA-GKKPAILMQSSG-LGNSINALASLNKTYGIPLPILASWRGVYKEKIP---AQ---IPMGRATPKL 114 (157)
T ss_pred hHHHHHHHHHHHHh-cCCcEEEEeCCc-HHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCc---cc---cchhhhhHHH
Confidence 45677778888776 567888888777 556799999999 899999998866665443100 00 000011 223
Q ss_pred HHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEE
Q 007800 519 VNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVF 561 (589)
Q Consensus 519 a~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~ 561 (589)
-+.++. ++..+++++++ .++++|+. ...+||+.|=+.
T Consensus 115 l~~~~i-----~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 115 LDTLGI-----PYTIPREPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHcCC-----CeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 355676 68889999999 88888875 335589887553
No 173
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=95.52 E-value=0.071 Score=60.62 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHhhhcCC----------CcEEEEEcchhhcc--cHHHHHHHHH-hCCC---eEEEEEeCCchhhhhhhcC
Q 007800 441 IGWSVGATLGYAQAAKD----------KRVIACIGDGSFQV--TAQEISTMIR-CGQR---SIIFLINNGGYTIEVEIHD 504 (589)
Q Consensus 441 mG~~l~~aiGaala~~~----------~~vv~i~GDGsf~~--~~~el~ta~~-~~l~---v~ivv~nN~~~~~~~~~~~ 504 (589)
+-.-=|..-|+..|..+ --.|++-||.+|.= ...|-.+..+ .+.+ .+.||+||+ +|+.- .
T Consensus 621 LEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNq-iGftT---~ 696 (1228)
T PRK12270 621 LEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQ-VGFTT---A 696 (1228)
T ss_pred hhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecC-ccccc---C
Confidence 33334555666555321 23678899999855 3667667666 6777 788888887 55510 0
Q ss_pred CCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 505 GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 505 ~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
....+ .......+|+++++ ..+.|+ |++....+.+.|++ .+.++++|||+.|.+
T Consensus 697 p~~~R-ss~y~td~ak~~~~-----PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYR 754 (1228)
T PRK12270 697 PESSR-SSEYATDVAKMIQA-----PIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYR 754 (1228)
T ss_pred ccccc-cchhhHHHHhhcCC-----CEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 00001 22345678889998 788884 89998888888887 456899999999964
No 174
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=95.40 E-value=3.6 Score=42.94 Aligned_cols=160 Identities=18% Similarity=0.102 Sum_probs=86.3
Q ss_pred cCCCcccHHHHHHHHHHHcCC--CEEEecCCcch-----HHHHHhhhcC--CCCeEEecCchhHHHHhhhhhhhccCceE
Q 007800 22 GGASVGTLGRHLARRLVEIGA--KDVFSVPGDFN-----LTLLDHLIAE--PELNLVGCCNELNAGYAADGYARSRGVGA 92 (589)
Q Consensus 22 ~~~~~~~~a~~i~~~L~~~GV--~~vfg~pG~~~-----~~l~~al~~~--~~i~~v~~~hE~~A~~~A~gyar~tg~~v 92 (589)
|..+.++..+++.+.|.+..- +.++.+.++.- ...++.+.+. |+=-+=...-|++++.+|.|+|....+.+
T Consensus 30 ~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pv 109 (355)
T PTZ00182 30 GATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPI 109 (355)
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEE
Confidence 433456777777777776643 34555544321 3334555432 12124456799999999999999643465
Q ss_pred EEEeCCcchHHHHHHHHH--hhh-------cCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEE-EEe
Q 007800 93 CVVTFTVGGLSVLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVV 162 (589)
Q Consensus 93 ~~~t~GpG~~n~~~~l~~--A~~-------~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~-~~v 162 (589)
|.....+=+..++--|.+ |+. -++||+++...-.. +.+..-| + +.. ..+++.+--.. ..+
T Consensus 110 v~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~---g~~G~tH-s----~~~--ea~lr~iPn~~V~~P 179 (355)
T PTZ00182 110 AEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAV---GHGGAYH-S----QSF--EAYFAHVPGLKVVAP 179 (355)
T ss_pred EEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCC---CCCCCcc-c----chH--HHHHhcCCCCEEEee
Confidence 553323222333333322 333 36888876422111 1111112 1 112 26777665433 345
Q ss_pred CChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 007800 163 NNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (589)
Q Consensus 163 ~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (589)
.++.++..+++.|++ .++|+||..|..+.
T Consensus 180 sd~~e~~~~l~~a~~----~~~P~~i~~p~~l~ 208 (355)
T PTZ00182 180 SDPEDAKGLLKAAIR----DPNPVVFFEPKLLY 208 (355)
T ss_pred CCHHHHHHHHHHHHh----CCCcEEEEeehHHh
Confidence 667777666666554 47999998887653
No 175
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.31 E-value=0.09 Score=48.29 Aligned_cols=117 Identities=12% Similarity=0.142 Sum_probs=75.1
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.++++.=| ++...+..+.+|...+.|+++|.-+-...... .+.
T Consensus 36 i~~v~~rhE~---~A~~mAdgyar~s-g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~----~~~-- 105 (162)
T cd07037 36 FRLHVRVDER---SAAFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPELRG----TGA-- 105 (162)
T ss_pred ceEEeccChH---HHHHHHHHHHHhh-CCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCHHhcC----CCC--
Confidence 3455444333 4445677777764 67777766544 55557899999999999988887543322110 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHH------HHHHHHHhhh---cCCCCeEEEEEEc
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDE------LTEAMKTATG---EQKDSLCFIEVFV 562 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~------l~~al~~a~~---~~~~gp~viev~~ 562 (589)
+...|...+.+.+-- ...++.++++ +...+++|+. ....||++||+++
T Consensus 106 -~q~~d~~~l~~~vtk-----~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 162 (162)
T cd07037 106 -NQTIDQVGLFGDYVR-----WSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLPF 162 (162)
T ss_pred -Ccccchhhhccceee-----EEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEeccC
Confidence 234577777777654 6788887777 6666666664 2345899999863
No 176
>PLN02470 acetolactate synthase
Probab=94.70 E-value=0.59 Score=52.49 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=97.9
Q ss_pred CcCH-HHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch
Q 007800 390 PLRV-NVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG 467 (589)
Q Consensus 390 ~i~~-~~~~~~L~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG 467 (589)
+++- ..+++.|.+ +.=+. ++.=.|.+..... .+....+.+++....-. .+.-+|-|.+... +++.+|++-=|
T Consensus 12 ~~~~a~~l~~~L~~-~GV~~-vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~G 85 (585)
T PLN02470 12 PRKGADILVEALER-EGVDT-VFAYPGGASMEIHQALTRSNCIRNVLCRHEQ---GEVFAAEGYAKAS-GKVGVCIATSG 85 (585)
T ss_pred cccHHHHHHHHHHH-cCCCE-EEEcCCcccHHHHHHHhccCCceEEEeccHH---HHHHHHHHHHHHh-CCCEEEEECCC
Confidence 4443 344555554 33333 4444555433221 12222235566655433 3555678888774 56777777655
Q ss_pred -hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHH
Q 007800 468 -SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKT 546 (589)
Q Consensus 468 -sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~ 546 (589)
+..-.+..+.+|...+.|+++|.-.-....+. .+. +...|...+++.+-- ...+|.+++++...+++
T Consensus 86 PG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~----~~~---~q~~d~~~l~~~~tk-----~~~~v~~~~~i~~~l~~ 153 (585)
T PLN02470 86 PGATNLVTGLADALLDSVPLVAITGQVPRRMIG----TDA---FQETPIVEVTRSITK-----HNYLVMDVEDIPRVIRE 153 (585)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEEecCCChhhcC----CCc---CcccchhhhhhhheE-----EEEEcCCHHHHHHHHHH
Confidence 44456899999999999999887654432221 111 244577888888875 78889999999888888
Q ss_pred hhh--c-CCCCeEEEEEEcC
Q 007800 547 ATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 547 a~~--~-~~~gp~viev~~~ 563 (589)
|+. . ...||+.|+|..|
T Consensus 154 A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 154 AFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred HHHHhcCCCCCeEEEEecCc
Confidence 875 2 2359999999977
No 177
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=94.42 E-value=1.2 Score=41.00 Aligned_cols=114 Identities=16% Similarity=0.089 Sum_probs=69.7
Q ss_pred eEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHHhhhc-CCcEEEEeCCCCccccCCccceeeecCCCCh
Q 007800 67 NLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSE-NLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145 (589)
Q Consensus 67 ~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~A~~~-~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~ 145 (589)
-+-....|++.+.+|.|+|....+.++ .+..+-...+...+..+-.. ++|+|+.... ... .+..-.-| +.
T Consensus 51 ~~~~gIaE~~~vg~a~GlA~~G~~pi~-~~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~-g~~-~g~~G~tH------~~ 121 (168)
T smart00861 51 VIDTGIAEQAMVGFAAGLALAGLRPVV-AIFFTFFDRAKDQIRSDGAMGRVPVVVRHDS-GGG-VGEDGPTH------HS 121 (168)
T ss_pred EEEcCcCHHHHHHHHHHHHHcCCCcEE-EeeHHHHHHHHHHHHHhCcccCCCEEEEecC-ccc-cCCCCccc------cc
Confidence 455678999999999999998654333 34455444455555544333 4776665521 111 11111112 23
Q ss_pred HHHHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCC
Q 007800 146 TQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISC 192 (589)
Q Consensus 146 ~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (589)
.++..+++.+-.. ...+.+++++..+++.|++ ...+|+||.++.
T Consensus 122 ~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~~~ 166 (168)
T smart00861 122 QEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRLER 166 (168)
T ss_pred hhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEecC
Confidence 3556777776643 4567888888888888873 235899999875
No 178
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=94.27 E-value=0.063 Score=58.72 Aligned_cols=92 Identities=22% Similarity=0.261 Sum_probs=60.5
Q ss_pred ccchhhHHHHHHHHhhhcCCCcEEEEEcch-hh----cccH--HHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCC
Q 007800 438 YGSIGWSVGATLGYAQAAKDKRVIACIGDG-SF----QVTA--QEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVI 510 (589)
Q Consensus 438 ~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf----~~~~--~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~ 510 (589)
.|-+|++++-|.||++-+|+..+.|++||| +- .++. +-+++..+-+.=+-|+++| ||.+.+ ...+..+
T Consensus 152 GGeLGy~l~ha~gAa~d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lN--GykI~n---pT~lar~ 226 (793)
T COG3957 152 GGELGYALSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLN--GYKIEN---PTVLARI 226 (793)
T ss_pred CcchhHHHHHHHHhhcCCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEec--ceeccC---ceeeeec
Confidence 477999999999999999999999999999 22 2222 2233333434334444454 677621 1233445
Q ss_pred CCCChHHHHHHccCCCCCccEEEeC--CHHH
Q 007800 511 KNWDYTGLVNAIHNGEGKCWTAKVR--SEDE 539 (589)
Q Consensus 511 ~~~d~~~la~a~G~~~~~~~~~~v~--~~~~ 539 (589)
++.++.++.+++|. +-+.|+ ++++
T Consensus 227 s~~el~~~f~G~Gy-----~p~~veg~d~~d 252 (793)
T COG3957 227 SDEELKALFEGYGY-----EPVFVEGADPAD 252 (793)
T ss_pred ChHHHHHHHhhCCC-----ceeEecCCChHH
Confidence 66789999999999 555554 3444
No 179
>PRK08611 pyruvate oxidase; Provisional
Probab=94.03 E-value=0.27 Score=55.06 Aligned_cols=118 Identities=8% Similarity=0.028 Sum_probs=82.5
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| ++.-.+..+.+|...++|+++|.-+-...... . .
T Consensus 44 i~~i~~rhE~---~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~----~---~ 112 (576)
T PRK08611 44 IKFIQVRHEE---VAALAAAAYAKLT-GKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLG----T---D 112 (576)
T ss_pred CeEEEeCcHH---HHHHHHHHHHHHh-CCceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccccC----C---C
Confidence 4455443322 4455677877764 57777777544 55556899999999999999988765543321 1 1
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~ 563 (589)
.+..+|...+++.+.- ...++++++++...+++|+. ....||+.|+++.|
T Consensus 113 ~~q~~d~~~l~~~itk-----~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 113 FFQEVNLEKMFEDVAV-----YNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred CccccCHHHHhhcccc-----eeEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 1234688889998865 77899999998888888765 23569999999987
No 180
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.93 E-value=0.26 Score=55.18 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=78.1
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|.|.+.+. +++.+|++.=| +..-.+..+.+|...+.|+++|.-.-..+... . ..+..+|...+++.
T Consensus 64 ~A~~~A~gyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~----~---~~~q~~d~~~l~~~ 135 (571)
T PRK07710 64 GAIHAAEGYARIS-GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIG----S---DAFQEADIMGITMP 135 (571)
T ss_pred HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCccccC----C---CCccccchhhhhhc
Confidence 5567788888764 67888777555 44556899999999999999888655533221 1 11234688888888
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+-- ...++.+++++...+++|+. . ...||+.|+++.|
T Consensus 136 ~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 136 VTK-----HNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred ccc-----eEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 755 78889999998888888775 1 2359999999976
No 181
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=93.89 E-value=1.1 Score=50.80 Aligned_cols=118 Identities=19% Similarity=0.106 Sum_probs=76.9
Q ss_pred eEE-ecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCCh
Q 007800 67 NLV-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145 (589)
Q Consensus 67 ~~v-~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~ 145 (589)
+++ ...-|++++.+|.|+|+..|.-.++.|..+=+.-+...+..+...+.|++++....... .+.+..- ||.
T Consensus 397 rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~-~G~dG~T------Hq~ 469 (653)
T TIGR00232 397 NYIHYGVREFAMGAIMNGIALHGGFKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIG-VGEDGPT------HQP 469 (653)
T ss_pred CeEeecccHHHHHHHHHHHHHcCCCeEEEEEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccC-CCCCCcc------cCC
Confidence 444 47899999999999999878744445555544455667777788899999997543332 2222112 234
Q ss_pred HHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 146 TQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 146 ~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
..++.+++.+-- ...++.++.++..+++.|++ ...||+||.++..-
T Consensus 470 iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~---~~~gP~~irl~r~~ 516 (653)
T TIGR00232 470 IEQLASLRAIPNLSVWRPCDGNETAAAWKYALE---SQDGPTALILSRQN 516 (653)
T ss_pred HHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh---cCCCcEEEEEcCCc
Confidence 456778886643 24455666666655555542 33699999999764
No 182
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=93.87 E-value=0.11 Score=47.15 Aligned_cols=111 Identities=21% Similarity=0.098 Sum_probs=66.5
Q ss_pred HHHHhhhhhhhcc-CceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCcc---ceeee-cC----CCChH
Q 007800 76 NAGYAADGYARSR-GVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILHHT-IG----LPDFT 146 (589)
Q Consensus 76 ~A~~~A~gyar~t-g~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~---~~~~~-~~----~~~~~ 146 (589)
.+.-+|.|.+.+. ++-|++++.--++...++.+..|...++|+++|.-+......-... ..+.. .. .....
T Consensus 32 ~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (153)
T PF02775_consen 32 YALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFPNP 111 (153)
T ss_dssp THHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTCHHSTBTTTSTTC
T ss_pred CHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEEEEeCCcceEeccccccCcCcccccccccccccC
Confidence 4556788888775 4544443433445555899999999999999998765432111000 00000 00 01123
Q ss_pred HHHHhhhcceeEEEEeCCh--hhHHHHHHHHHHHhHhcCCcEEEEe
Q 007800 147 QELRCFQAITCSQAVVNNL--GDAHELIDTAISTALKESKPVYISI 190 (589)
Q Consensus 147 ~~~~~~~~~tk~~~~v~~~--~~~~~~l~~A~~~a~~~~gPV~i~i 190 (589)
|...+.+.+--...+++++ +++.+.|++|+ ..+||+.|++
T Consensus 112 d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 112 DFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp GHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred CHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 5567777775557788777 66655555555 6689999986
No 183
>PRK07524 hypothetical protein; Provisional
Probab=93.85 E-value=0.45 Score=52.81 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=77.8
Q ss_pred hHHHHHHHHhhhcCCCcEEEEE-cchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCC-CCChHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACI-GDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIK-NWDYTGLVN 520 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~-GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~-~~d~~~la~ 520 (589)
.+.-+|-|.+... +++.+|++ ..-++.-.+..+.+|...++|+++|.-........+ + . ..+. .+|...+++
T Consensus 50 ~A~~mAdgyar~t-g~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~---~-~-~~~~~~~d~~~l~~ 123 (535)
T PRK07524 50 GAGFMADGYARVS-GKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGK---G-R-GKLHELPDQRAMVA 123 (535)
T ss_pred HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCC---C-C-ccccccccHHHHhh
Confidence 5666788888774 56655554 434666678999999999999999886544322110 0 0 0112 257888999
Q ss_pred HccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 521 AIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 521 a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
.+-- ...++.+++++...+++|+. . ...||+.|+++.|
T Consensus 124 ~~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 124 GVAA-----FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred hhce-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 8876 78999999999988888875 2 2469999999876
No 184
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=93.85 E-value=0.99 Score=42.86 Aligned_cols=116 Identities=17% Similarity=0.075 Sum_probs=72.0
Q ss_pred HHHhhhhhhhccC-c-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCc-c---ceeeecC-CCChHHHH
Q 007800 77 AGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-R---ILHHTIG-LPDFTQEL 149 (589)
Q Consensus 77 A~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~-~---~~~~~~~-~~~~~~~~ 149 (589)
+.-+|.|.+.+.. + .+|++ .--++.-.+..|..|...++|+++|.-+......-+. + ...+..+ .....|..
T Consensus 58 ~lpaaiGa~la~p~r~vv~i~-GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~ 136 (196)
T cd02013 58 ALPAIIGAKAAAPDRPVVAIA-GDGAWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFA 136 (196)
T ss_pred HHHHHHHHHHhCCCCcEEEEE-cchHHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHH
Confidence 4457888776653 4 44443 3334444578899999999999999855433211000 0 0000000 01123557
Q ss_pred HhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 150 ~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
.+.+.+--...++.+++++...+++|+..+. ..||+.|++..|-
T Consensus 137 ~lA~a~G~~~~~v~~~~el~~al~~a~~~~~-~~~p~liev~v~~ 180 (196)
T cd02013 137 KIAEACGAKGITVDKPEDVGPALQKAIAMMA-EGKTTVIEIVCDQ 180 (196)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHhcCC-CCCeEEEEEEeCc
Confidence 7888887778899998888888887775432 3799999999764
No 185
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.83 E-value=0.35 Score=53.52 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=79.0
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|-|.+... +++-||++==| ++...+..|.+|...+.|+++|.-.=....+. . ..+...|...+.+.
T Consensus 50 ~Aa~mAdgyar~T-GkpgV~~~tsGPGatN~~tgla~A~~d~~Pll~itGqv~~~~~g----~---~afQe~D~~~l~~p 121 (550)
T COG0028 50 GAAFAADGYARAT-GKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIG----T---DAFQEVDQVGLFRP 121 (550)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCccccccC----c---chhhhcchhhHhhh
Confidence 5666788888774 67766666555 77777999999999999988877622211111 1 11245699999998
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+-- +.++|.+++++...+++|+. . ...||++|+++-|
T Consensus 122 ~tk-----~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 122 ITK-----YNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred hhe-----eEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 876 88999999999999999986 2 3458999999876
No 186
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.78 E-value=0.42 Score=53.64 Aligned_cols=110 Identities=8% Similarity=0.046 Sum_probs=78.3
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|-|.+.+..+++.+|++-=| ++...+..|.+|...+.|+++|.-.-...... . ..+..+|...+++.
T Consensus 52 ~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~----~---~~~q~~D~~~~~~~ 124 (588)
T TIGR01504 52 GASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLH----K---EDFQAVDIAAIAKP 124 (588)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccC----C---CcccccCHHHHhhh
Confidence 3455677777764356777665433 56667899999999999999887544432211 1 11345688889998
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVHK 564 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~~ 564 (589)
+-- ...+|.+++++...|++|+. ....||+.|+|..|-
T Consensus 125 vtk-----~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 125 VSK-----MAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred hce-----EEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 875 78889999999888888875 134589999999874
No 187
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=93.65 E-value=0.67 Score=52.08 Aligned_cols=118 Identities=9% Similarity=0.107 Sum_probs=79.2
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcc-hhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD-GSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GD-Gsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.+|++-= -++...+..+.+|...+.|+++|.-.=..... ..+.
T Consensus 44 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~----~~~~-- 113 (588)
T PRK07525 44 IRFIDVAHEQ---NAGHMADGYTRVT-GRMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTI----GQGG-- 113 (588)
T ss_pred CCEEEecCHH---HHHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccC----CCCC--
Confidence 4455544333 3446677877764 4566666643 46666789999999999998888732221111 0111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~ 563 (589)
+...|...+++.+-- ...++++++++...|++|+. ....||+.|+|+.|
T Consensus 114 -~q~~d~~~l~~~~tk-----~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~D 164 (588)
T PRK07525 114 -FQEAEQMPMFEDMTK-----YQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRD 164 (588)
T ss_pred -Ccccchhhhhhhhee-----EEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 234577888888765 67888999888888888775 23579999999977
No 188
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=93.54 E-value=0.45 Score=53.21 Aligned_cols=120 Identities=7% Similarity=-0.016 Sum_probs=80.3
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEc-chhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIG-DGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~G-DGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+... +++.+|++- --++.-.+..+.+|...++|+++|.-.-...... . + ..
T Consensus 48 i~~i~~rhE~---~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~--~-~~ 118 (569)
T PRK09259 48 IRYIGFRHEQ---SAGNAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVD--L--Q-QG 118 (569)
T ss_pred CCEEeeCCHH---HHHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCccccc--c--c-CC
Confidence 4455544333 3445566766663 567666664 4466667899999999999999988753321100 0 0 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
.+..+|...+++.+-- ..++|++++++...+++|+. ....||+.|+++.|
T Consensus 119 ~~q~~d~~~~~~~~tk-----~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 119 DYEELDQLNAAKPFCK-----AAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred Cccccchhhhhhhhee-----eeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 2345688888888865 78899999998888888875 23468999999966
No 189
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.53 E-value=0.39 Score=54.25 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=81.7
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....- ..+.-+|-|.+.+. +++.+|++-=| ++...+..+.+|...++|+++|.-+-...... .+
T Consensus 70 i~~v~~rhE---~~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~----~~--- 138 (612)
T PRK07789 70 VRHVLVRHE---QGAGHAAEGYAQAT-GRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIG----TD--- 138 (612)
T ss_pred ceEEEeccH---HHHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CC---
Confidence 445544333 24556778888874 56777666544 55556899999999999999888644432210 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
.+..+|...+++.+-- ...+|++++++...+++|+. . ...||+.|++..|
T Consensus 139 ~~q~~d~~~l~~~~tk-----~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 139 AFQEADIVGITMPITK-----HNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred cCcccchhhhhhccee-----EEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 1244688888888765 67889999998888888875 2 2359999999977
No 190
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.51 E-value=0.41 Score=44.40 Aligned_cols=109 Identities=20% Similarity=0.133 Sum_probs=63.7
Q ss_pred HHHhhhhhhhccC-c-eEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeee-------cC-CCCh
Q 007800 77 AGYAADGYARSRG-V-GACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT-------IG-LPDF 145 (589)
Q Consensus 77 A~~~A~gyar~tg-~-~v~~~t~GpG~~n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~-------~~-~~~~ 145 (589)
+.-+|.|.+.... + .+|++ |=|... ....+..|...++|+++|.-+.......+. .++. .. ....
T Consensus 53 ~lp~AiGa~la~~~~~vv~i~--GDG~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~--~~~~~~~~~~~~~~~~~~ 128 (172)
T cd02004 53 GLGYAIAAALARPDKRVVLVE--GDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLD--GQQLSYGLGLPVTTLLPD 128 (172)
T ss_pred hHHHHHHHHHhCCCCeEEEEE--cchhhcCCHHHHHHHHHcCCCEEEEEEECcccccchh--hhhhhccCCCceeccCCC
Confidence 4446777666654 3 44443 444443 468888999999998888765432211110 0000 00 0012
Q ss_pred HHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 146 ~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
.|...+.+.+--...++.+++++ ++|++.+.+.+||+.|++..|
T Consensus 129 ~d~~~la~a~G~~~~~v~~~~el----~~al~~a~~~~~p~liev~i~ 172 (172)
T cd02004 129 TRYDLVAEAFGGKGELVTTPEEL----KPALKRALASGKPALINVIID 172 (172)
T ss_pred CCHHHHHHHCCCeEEEECCHHHH----HHHHHHHHHcCCCEEEEEEcC
Confidence 34567777776677888886665 455555555579999998754
No 191
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.45 E-value=0.44 Score=53.84 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=80.9
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++..+.-. .+.-+|-|.+... +++.+|++-=| ++...++.|.+|...+.|+++|.-+=....+. .+.
T Consensus 61 i~~i~~rhE~---~Aa~aA~gyar~t-gk~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~----~~~-- 130 (616)
T PRK07418 61 LKHILVRHEQ---GAAHAADGYARAT-GKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIG----TDA-- 130 (616)
T ss_pred ceEEEeccHH---HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccC----CCC--
Confidence 4455544332 4555677777764 67877776545 66667999999999999999988643322221 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+...|...+++.+-- ...+|.+++++...+++|+. . ...||++|+++.|
T Consensus 131 -~Qe~d~~~~~~~vtk-----~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 131 -FQETDIFGITLPIVK-----HSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred -cccccHHHHhhhcce-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 234577778887754 67889999999888888875 2 2359999999875
No 192
>PRK08322 acetolactate synthase; Reviewed
Probab=93.44 E-value=0.37 Score=53.60 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=76.8
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|.|.+.+. +++.+|++-=| ++.-.+..+.+|-..++|+++|.-+=...... .+ .+...|...+++.
T Consensus 49 ~A~~~A~gyar~t-g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~----~~---~~q~~d~~~~~~~ 120 (547)
T PRK08322 49 GAAFMAATYGRLT-GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSK----QG---SFQIVDVVAMMAP 120 (547)
T ss_pred HHHHHHHHHHHhh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccC----CC---ccccccHHHHhhh
Confidence 4556778888774 56777776544 56667899999999999998887643322211 11 1234588888888
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+-- ...++++++++...+++|+. . ...||+.|+++.|
T Consensus 121 ~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 121 LTK-----WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred hee-----EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 764 67899999998888888875 2 2458999999977
No 193
>PRK08617 acetolactate synthase; Reviewed
Probab=93.43 E-value=0.38 Score=53.60 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=80.8
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.+|++.=| ++.-.+..+.+|...+.|+++|.-.-....+. .+.
T Consensus 43 i~~i~~~hE~---~A~~~A~gyar~t-g~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~----~~~-- 112 (552)
T PRK08617 43 PELIVTRHEQ---NAAFMAAAIGRLT-GKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRL----KRT-- 112 (552)
T ss_pred CCEEEeccHH---HHHHHHHhHhhhc-CCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCcccccC----CCC--
Confidence 4455444333 3445677777763 67888887655 44446899999999999998887643322221 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
+..+|...+++.+-- ...++++++++...+++|+. ....||+.|++..|
T Consensus 113 -~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 113 -HQSMDNVALFRPITK-----YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred -ccccchhhhhhhhcc-----eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 244677888888865 78999999998888888875 12358999999976
No 194
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.38 E-value=0.48 Score=53.27 Aligned_cols=119 Identities=8% Similarity=0.061 Sum_probs=82.7
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchh-hcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS-FQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGs-f~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+....+++.+|++-=|- +.-.+..+.+|...+.|+++|.-+-...... .+.
T Consensus 43 i~~v~~rhE~---~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~----~~~-- 113 (591)
T PRK11269 43 IRHILARHVE---GASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLH----KED-- 113 (591)
T ss_pred CcEEeeCCHH---HHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CCc--
Confidence 4455544333 45567888887642578888876663 3445889999999999999887654433221 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
+..+|...+++.+-- ...+|.+++++...+++|+. ....||+.|+++.|
T Consensus 114 -~q~~d~~~l~~~itk-----~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 114 -FQAVDIESIAKPVTK-----WAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred -ccccChhhHhhccee-----EEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 244688888888765 78889999998888888875 22358999999977
No 195
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=93.37 E-value=0.48 Score=52.78 Aligned_cols=120 Identities=7% Similarity=-0.020 Sum_probs=81.5
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEc-chhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIG-DGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~G-DGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++-+|++- --++.-.++.+.+|...+.|+++|.-.-..... .... .
T Consensus 41 i~~i~~rhE~---~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~--~~~~---~ 111 (554)
T TIGR03254 41 MRYIGFRHEQ---SAGYAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIV--DLQQ---G 111 (554)
T ss_pred CcEEEeCCHH---HHHHHHHHHHHHh-CCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCcccc--ccCC---C
Confidence 3455444333 4445677777764 566666654 446666789999999999999998875442211 0001 1
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
.+..+|...+++.+-- ...++++++++.+.+++|+. ....||+.|+++.|
T Consensus 112 ~~q~~d~~~~~~~vtk-----~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 112 DYEEMDQLAAAKPFAK-----AAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred CcchhhHHHHhhhhhe-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 2344688889998876 78899999998888888875 23458999999876
No 196
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.35 E-value=0.41 Score=53.83 Aligned_cols=120 Identities=10% Similarity=0.073 Sum_probs=82.3
Q ss_pred CCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 007800 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (589)
Q Consensus 429 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~ 507 (589)
..+++....-. .+.-+|-|.+... +++-+|++-=| ++.-.++.+.+|...+.|+++|.-+-...... .+
T Consensus 49 ~i~~I~~rhE~---~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~----~~-- 118 (595)
T PRK09107 49 DIQHILVRHEQ---GAGHAAEGYARST-GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIG----SD-- 118 (595)
T ss_pred CCeEEEECChH---HHHHHHHHHHHHh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhhcC----CC--
Confidence 34566554433 4455677877764 56666665434 66667899999999999998888654432211 11
Q ss_pred CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007800 508 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 564 (589)
Q Consensus 508 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~~ 564 (589)
.+..+|...+++.+-- ...+|++++++...+++|+. . ...||+.|+|+.|-
T Consensus 119 -~~q~~d~~~l~~~vtk-----~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 119 -AFQECDTVGITRPCTK-----HNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred -CCcccchhhhhhhheE-----EEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 1244688888888765 67889999999888888876 2 23589999999874
No 197
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=93.33 E-value=0.41 Score=53.31 Aligned_cols=118 Identities=11% Similarity=-0.021 Sum_probs=80.2
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.+|++-=| +..-.+..+.+|-..+.|+++|.-+-...... .+.
T Consensus 40 i~~v~~~hE~---~A~~mAdgyar~t-gkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~~~----~~~-- 109 (549)
T PRK06457 40 VKYVQVRHEE---GAALAASVEAKIT-GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIG----HDY-- 109 (549)
T ss_pred CeEEEeCcHH---HHHHHHHHHHHHh-CCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCccccC----CCc--
Confidence 4455444333 3445677877764 67877776555 55556899999999999999888653322110 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~ 563 (589)
+..+|...+++.+-- ...++.+++++...+++|+. ....||+.|+++.|
T Consensus 110 -~q~~d~~~l~~~vtk-----~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 110 -FQEVNLTKLFDDVAV-----FNQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred -ccccchhhhhcccee-----EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 234577888877654 67889999998888888765 23569999999976
No 198
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=93.31 E-value=4.6 Score=37.25 Aligned_cols=147 Identities=16% Similarity=0.092 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcch----HHHHHhhhc-CCCCeEEec-CchhHHHHhhhhhhhccCceEEEEeCCcchHH
Q 007800 30 GRHLARRLVEIGAKDVFSVPGDFN----LTLLDHLIA-EPELNLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLS 103 (589)
Q Consensus 30 a~~i~~~L~~~GV~~vfg~pG~~~----~~l~~al~~-~~~i~~v~~-~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n 103 (589)
++.|.+.+++. -+.++.-.+... ...++.+.+ .++.+++.+ ..|++.+.+|.|+|+...+.++..+..+=+..
T Consensus 4 ~~~l~~~~~~~-~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl~r 82 (167)
T cd07036 4 NEALDEEMERD-PRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFALP 82 (167)
T ss_pred HHHHHHHHhcC-CCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHHHH
Confidence 45666665544 444444333211 235566654 345466654 89999999999999964335554456654445
Q ss_pred HHHHHHH--hhhc-------CCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEE-EeCChhhHHHHHH
Q 007800 104 VLNAIAG--AYSE-------NLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELID 173 (589)
Q Consensus 104 ~~~~l~~--A~~~-------~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~-~v~~~~~~~~~l~ 173 (589)
++--+.. ++.+ +.||+++...... ...+.. | + ..+ ..+++.+-.... .+.++.++..+++
T Consensus 83 a~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~--~~~G~t-h-s-----~~~-~a~lr~iPg~~V~~Psd~~e~~~~l~ 152 (167)
T cd07036 83 AFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGG--IGGGAQ-H-S-----QSL-EAWFAHIPGLKVVAPSTPYDAKGLLK 152 (167)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCC--CCcChh-h-h-----hhH-HHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 5555432 3333 5899988743221 122221 2 1 112 567777654333 4567777766666
Q ss_pred HHHHHhHhcCCcEEEEeC
Q 007800 174 TAISTALKESKPVYISIS 191 (589)
Q Consensus 174 ~A~~~a~~~~gPV~i~iP 191 (589)
.+++ .+||+++.-|
T Consensus 153 ~~~~----~~~P~~~~e~ 166 (167)
T cd07036 153 AAIR----DDDPVIFLEH 166 (167)
T ss_pred HHHh----CCCcEEEEec
Confidence 5554 4699999876
No 199
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.27 E-value=0.86 Score=51.05 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=83.8
Q ss_pred CCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 007800 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (589)
Q Consensus 429 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~ 507 (589)
+.+++....-. .+.-+|-|.+... +++.+|++-=| ++.-.+..+.+|...+.|+++|.-.-...... .+
T Consensus 42 ~i~~i~~rhE~---~A~~mAdgyar~t-g~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~----~~-- 111 (574)
T PRK06466 42 KVEHILVRHEQ---AATHMADGYARAT-GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIG----ED-- 111 (574)
T ss_pred CceEEEeCcHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccC----CC--
Confidence 34566554433 3445777887764 67878777665 55557899999999999999888654432210 11
Q ss_pred CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 508 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 508 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
.+..+|...+++.+-- ...++.+++++...+++|+. . ...||+.|+++.|
T Consensus 112 -~~q~~d~~~l~~~itk-----~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 112 -AFQETDMVGISRPIVK-----HSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred -cccccchhhhhhccce-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 1244688888888765 78889999999888888875 2 2359999999988
No 200
>PLN02790 transketolase
Probab=93.17 E-value=1.9 Score=48.96 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=75.0
Q ss_pred EEecCchhHHHHhhhhhhhcc-Cc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCCh
Q 007800 68 LVGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145 (589)
Q Consensus 68 ~v~~~hE~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~ 145 (589)
+-.-.-|++++.+|.|.|+.. |. .++. |..+=++-+..++..+...+.|++++....... .+.+-. +|+.
T Consensus 395 i~~GIaEq~mv~~AaGlA~~G~G~~P~~~-tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~-~G~DG~------THq~ 466 (654)
T PLN02790 395 VRFGVREHGMGAICNGIALHSSGLIPYCA-TFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIG-LGEDGP------THQP 466 (654)
T ss_pred EEeeechHHHHHHHHHHHhcCCCcEEEEE-ecHHHHHHHHHHHHHHHhcCCCeEEEEECCcee-ecCCCC------Cccc
Confidence 455678999999999999985 76 5553 554433445667777888999999887443222 222111 2344
Q ss_pred HHHHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHh-cCCcEEEEeCCCC
Q 007800 146 TQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (589)
Q Consensus 146 ~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~-~~gPV~i~iP~dv 194 (589)
..++.+++.+... ..++.+..++.. +++.|.. ..||+||.+|+.-
T Consensus 467 iedla~lR~iPnl~V~~PaD~~E~~~----~l~~al~~~~gP~~irl~R~~ 513 (654)
T PLN02790 467 IEHLASLRAMPNILMLRPADGNETAG----AYKVAVTNRKRPTVLALSRQK 513 (654)
T ss_pred HHHHHHhcCCCCcEEEeCCCHHHHHH----HHHHHHHcCCCCEEEEecCCC
Confidence 5668888887653 334555555544 4555544 3699999999864
No 201
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.17 E-value=0.42 Score=53.52 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=83.2
Q ss_pred CCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 007800 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (589)
Q Consensus 429 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~ 507 (589)
+.+++..+.-. .+.-+|-|.+... +++-+|++.=| ++...+..+.+|...+.|+++|.-+=...... .+
T Consensus 42 ~i~~i~~rhE~---~A~~mAdgYar~t-g~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~----~~-- 111 (574)
T PRK07979 42 GIDHVLVRHEQ---AAVHMADGLARAT-GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIG----YD-- 111 (574)
T ss_pred CceEEEeCcHH---HHHHHHHHHHHHh-CCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhccC----CC--
Confidence 34555544433 4455777888764 56777766545 55557899999999999988887643322211 11
Q ss_pred CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007800 508 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 564 (589)
Q Consensus 508 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~~ 564 (589)
.+...|...+++.+-- ...+|++++++...+++|+. . ...||+.|+|..|-
T Consensus 112 -~~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 112 -AFQECDMVGISRPVVK-----HSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred -CCceecHHHHhhcccc-----eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 1244688888888865 78889999999988888875 2 23599999998874
No 202
>PRK07586 hypothetical protein; Validated
Probab=93.16 E-value=0.46 Score=52.46 Aligned_cols=109 Identities=14% Similarity=0.213 Sum_probs=76.2
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEc-chhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIG-DGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~G-DGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|-|.+... +++.+|++- --++.-.+..+.+|...+.|+++|.-+-...... ...+...|...+++.
T Consensus 50 ~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~~~~-------~~~~q~~d~~~~~~~ 121 (514)
T PRK07586 50 VATGAADGYARMA-GKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATYHRK-------YDAPLTSDIEALARP 121 (514)
T ss_pred HHHHHHHHHHHHH-CCCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchhccC-------CCcccccchhhhhcc
Confidence 4455677777764 567766553 3355566888999999999998887654332210 111234688888888
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 564 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~~ 564 (589)
+-- +..+|++++++...+++|+. . ...||+.|+++.|-
T Consensus 122 vtk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 122 VSG-----WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred ccc-----eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 865 78889999998888888875 2 24699999999874
No 203
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=93.15 E-value=0.41 Score=43.71 Aligned_cols=106 Identities=11% Similarity=0.020 Sum_probs=67.2
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 442 GWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 442 G~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
+.+..+|-|.+.+ .+++++++---++......|.++...+.|+++|+-+-...+... .......+|...+.+.
T Consensus 51 ~~A~~~A~g~~r~--~~~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~~~~~-----~~~~~~~~~~~~~~~~ 123 (160)
T cd07034 51 HAAAEAAIGASAA--GARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGL-----PKPDQSDLMAARYGGH 123 (160)
T ss_pred HHHHHHHHHHHhh--CCcEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCCCCCC-----CCcCcHHHHHHHhCCC
Confidence 3566777788775 33455555444677789999999999999999987766443210 0000112333334433
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEE
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEV 560 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev 560 (589)
.. ...++.+++++...+++|+. ...++|++|-+
T Consensus 124 -~~-----~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 124 -PW-----PVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred -CE-----EEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 23 67778899998888888875 23457888754
No 204
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.10 E-value=0.42 Score=53.42 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=82.2
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+... +++.+|++-=| +....+..+.+|-..+.|+++|.-.-...... .+
T Consensus 53 i~~i~~rhE~---~A~~mAdgyar~t-g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~----~~--- 121 (570)
T PRK06725 53 LKHILTRHEQ---AAIHAAEGYARAS-GKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIG----KD--- 121 (570)
T ss_pred CcEEEecCHH---HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCccccc----CC---
Confidence 4455544333 4456788888764 56766665434 55556899999999999999888644422211 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~~ 564 (589)
.+..+|...+++.+-- ...+|.+++++...+++|+. ....||+.|++..|-
T Consensus 122 ~~q~~d~~~l~~~itk-----~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 122 GFQEADVVGITVPVTK-----HNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred CCcccchhhhhhccce-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 1244688889988875 78889999999988888875 123699999999763
No 205
>PTZ00089 transketolase; Provisional
Probab=93.08 E-value=0.77 Score=52.11 Aligned_cols=116 Identities=17% Similarity=0.057 Sum_probs=75.7
Q ss_pred EEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHH
Q 007800 68 LVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147 (589)
Q Consensus 68 ~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~ 147 (589)
+-.-.-|++++.+|.|.|...|.-.++.|..+=+.=+...+..+...+.|++++....... .+.+-. +||...
T Consensus 406 i~~GIaEq~mv~~AaGlA~~~G~~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~-~g~DG~------THq~ie 478 (661)
T PTZ00089 406 IRFGVREHAMCAIMNGIAAHGGFIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIG-LGEDGP------THQPVE 478 (661)
T ss_pred eeeeecHHHHHHHHHHHHHcCCCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCcee-cCCCCC------CcccHH
Confidence 4556789999999999999767633344555545567778888899999999996332222 122111 234456
Q ss_pred HHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHh-cCCcEEEEeCCCC
Q 007800 148 ELRCFQAITCS-QAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (589)
Q Consensus 148 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~-~~gPV~i~iP~dv 194 (589)
++.+++.+--- ..++.++.++ ..+++.|.. ..||+||.+|+.-
T Consensus 479 dia~lR~iPn~~V~~PaD~~E~----~~~l~~al~~~~gP~~irl~R~~ 523 (661)
T PTZ00089 479 TLALLRATPNLLVIRPADGTET----SGAYALALANAKTPTILCLSRQN 523 (661)
T ss_pred HHHHHhcCCCcEEEecCCHHHH----HHHHHHHHHcCCCCEEEEecCCC
Confidence 67888877542 3344555555 445555553 3699999999764
No 206
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.01 E-value=0.37 Score=53.64 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=77.1
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|.|.+... +++.+|++-=| ++...+..+.+|...+.|+++|.-.-...... .+. +..+|...+++.
T Consensus 49 ~A~~~Adgyar~s-g~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~----~~~---~q~~d~~~~~~~ 120 (548)
T PRK08978 49 GAAMAAIGYARAT-GKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIG----TDA---FQEIDVLGLSLA 120 (548)
T ss_pred HHHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CCC---CcccchhccccC
Confidence 4556778888874 67888887666 45556899999999999998887644432211 111 234566677777
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--cC-CCCeEEEEEEcCC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVHK 564 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~-~~gp~viev~~~~ 564 (589)
+-- +..+|++++++...+++|+. .. ..||+.|||+.|-
T Consensus 121 ~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 121 CTK-----HSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred cee-----eEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 654 77889999998888888875 22 3599999999863
No 207
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=92.93 E-value=1.3 Score=42.35 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=72.3
Q ss_pred HHHhhhhhhhccC-c-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeee----------cCC--
Q 007800 77 AGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT----------IGL-- 142 (589)
Q Consensus 77 A~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~----------~~~-- 142 (589)
+.-+|.|.+.+.. + .||++ .--++.-.+..|..|...++|+++|.-+......-+ ..|+. ...
T Consensus 62 ~lpaaiGa~la~p~~~vv~i~-GDG~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~--~~q~~~~~~~~~~~~~~~~~ 138 (202)
T cd02006 62 TVPAALGVAAADPDRQVVALS-GDYDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIR--QAQRAFDMDYQVNLAFENIN 138 (202)
T ss_pred hhHHHHhHHhhCCCCeEEEEE-eChHhhccHHHHHHHHHhCCCeEEEEEeCchHHHHH--HHHHHhcCcccccccccccc
Confidence 3346777665653 4 44443 333344445788999999999999987654321100 00000 000
Q ss_pred -----CChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 143 -----PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 143 -----~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
....|...+.+.+-....++.+++++...|++|+.......+|+.|++..|-
T Consensus 139 ~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 139 SSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 0013556778887778899999999888888888654444799999998764
No 208
>PRK12754 transketolase; Reviewed
Probab=92.93 E-value=2 Score=48.64 Aligned_cols=116 Identities=12% Similarity=0.005 Sum_probs=79.3
Q ss_pred EEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHH
Q 007800 68 LVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147 (589)
Q Consensus 68 ~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~ 147 (589)
+-.-.-|++++.+|.|.+...|.-.++.|..+=+.-+...|-.+...+.|++++........ +.+-. +++...
T Consensus 405 i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~-G~DG~------THq~iE 477 (663)
T PRK12754 405 IHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGP------THQPVE 477 (663)
T ss_pred EeeccchhhHHHHHhhHHhcCCCeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc-CCCCC------CcccHH
Confidence 55678899999999999998786555556666555677888778889999998876544442 32211 234556
Q ss_pred HHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHhc-CCcEEEEeCCCC
Q 007800 148 ELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKE-SKPVYISISCNL 194 (589)
Q Consensus 148 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~dv 194 (589)
++.+++.+--. ..++.+..++ ..+++.|... .||+||.++..-
T Consensus 478 dla~lR~iPn~~V~~PaD~~E~----~~~~~~a~~~~~gP~yirl~R~~ 522 (663)
T PRK12754 478 QVASLRVTPNMSTWRPCDQVES----AVAWKYGVERQDGPTALILSRQN 522 (663)
T ss_pred HHHHHhcCCCcEEecCCCHHHH----HHHHHHHHhCCCCCEEEEeCCCC
Confidence 78888887643 3344555444 4555555554 699999999753
No 209
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=92.89 E-value=0.53 Score=52.68 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=81.3
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+... +++.+|++-=| ++.-.+..+.+|-..+.|+++|.-.-...... .+
T Consensus 44 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~----~~--- 112 (572)
T PRK06456 44 LRHVLMRHEQ---AAAHAADGYARAS-GVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMG----KM--- 112 (572)
T ss_pred CeEEEeCcHH---HHHHHHHHHHHhh-CCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCccccC----CC---
Confidence 3455443333 3556778888764 67888875444 55556899999999999998887543322110 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~~ 564 (589)
.+..+|...+++.+-- ...++++++++...+++|+. . ...||+.|+++.|-
T Consensus 113 ~~q~~d~~~i~~~~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 113 AFQEADAMGVFENVTK-----YVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred Cccccchhhhhhccce-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 1244578888888875 78889999998888888875 2 24599999998763
No 210
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.83 E-value=0.97 Score=50.20 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=78.5
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+... +++.+|++-=| ++.-.+..+.+|...+.|+++|.-.-...... ..
T Consensus 37 i~~i~~~hE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~~~----~~--- 105 (539)
T TIGR02418 37 IELIVVRHEQ---NAAFMAQAVGRIT-GKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLL----KL--- 105 (539)
T ss_pred CCEEEeCcHH---HHHHHHHHHHHHh-CCceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCcccccc----cC---
Confidence 4455544333 3444677777764 56766666545 55556899999999999999888643322111 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
.+..+|...+++.+-- ...++++++++...+++|+. ....||+.|+++.|
T Consensus 106 ~~q~~d~~~~~~~~tk-----~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 106 THQSMDNVALFRPITK-----YSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred cccccchhhhhhccee-----eeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 1234577788888754 67888999998887777765 22358999999987
No 211
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=92.81 E-value=3 Score=39.04 Aligned_cols=111 Identities=12% Similarity=-0.030 Sum_probs=64.2
Q ss_pred HhhhhhhhccC-ceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeee---cCCCChHHHHHhhhc
Q 007800 79 YAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT---IGLPDFTQELRCFQA 154 (589)
Q Consensus 79 ~~A~gyar~tg-~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 154 (589)
-+|.|.+.+.. +-|++++.--++.-.++.+..|...++|+++|.-+.......+ ..|.. .......|...+.+.
T Consensus 57 ~~aiGaala~~~~~vv~i~GDG~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~--~~~~~~~~~~~~~~~d~~~ia~a 134 (183)
T cd02005 57 PAALGAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINNDGYTIER--AIHGPEASYNDIANWNYTKLPEV 134 (183)
T ss_pred HHHHHHHHhCCCCeEEEEECCchhhccHHHHHHHHHhCCCCEEEEEECCCcEEEE--EeccCCcCcccCCCCCHHHHHHH
Confidence 35667665554 4344434333444456778889899999888876654422111 00000 000011245666676
Q ss_pred ce----eEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 155 IT----CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 155 ~t----k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
+- -...++.+++++.+.+++|++ ..++|+.|++..|-
T Consensus 135 ~G~~~~~~~~~v~~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 135 FGGGGGGLSFRVKTEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred hCCCccccEEEecCHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 64 356778887777666666664 25799999998764
No 212
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.76 E-value=1.3 Score=49.73 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=80.1
Q ss_pred CCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 007800 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (589)
Q Consensus 429 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~ 507 (589)
+.+++....-. .+.-+|-|.+.+. +++.+|++-=| ++.-.+..+.+|...+.|+++|.-.=...... .
T Consensus 59 ~i~~i~~rhE~---~A~~~AdgYar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~----~--- 127 (587)
T PRK06965 59 KIQHVLVRHEQ---AAVHAADGYARAT-GKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIG----Q--- 127 (587)
T ss_pred CCeEEEeCCHH---HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccC----C---
Confidence 34566554443 3445788888774 56666555444 66667999999999999988877422211110 1
Q ss_pred CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 508 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 508 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
..+..+|...+++.+-- ...+|.+++++...+++|+. . ...||+.|++..|
T Consensus 128 ~~~q~~d~~~l~~~itk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 128 DAFQECDTVGITRPIVK-----HNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred CCcccccHHHHhcCCcc-----eeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 11244688888888765 78889999988887777775 2 2358999999987
No 213
>PRK12753 transketolase; Reviewed
Probab=92.73 E-value=0.91 Score=51.50 Aligned_cols=116 Identities=16% Similarity=0.026 Sum_probs=78.1
Q ss_pred EEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHH
Q 007800 68 LVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147 (589)
Q Consensus 68 ~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~ 147 (589)
+-.-.-|++++.+|.|.|.-.|.-.++.|..+=+.=+...|-.+...+.||+++........ +.+-. +++...
T Consensus 405 i~~GIaEq~mv~~aaGlA~~~G~~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~-G~DG~------THq~ie 477 (663)
T PRK12753 405 IHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGL-GEDGP------THQPVE 477 (663)
T ss_pred EEeeecHHHHHHHHHHHHHhCCCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCccc-CCCCc------ccccHH
Confidence 45567899999999999997786444556666555677788778889999999865544432 22211 234455
Q ss_pred HHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHh-cCCcEEEEeCCCC
Q 007800 148 ELRCFQAITCS-QAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (589)
Q Consensus 148 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~-~~gPV~i~iP~dv 194 (589)
++.+++.+-.. ..++.+..++ ..+++.|.. ..||+||.+++.-
T Consensus 478 dla~lR~iPn~~v~~PaD~~E~----~~~~~~al~~~~gP~~irl~R~~ 522 (663)
T PRK12753 478 QLASLRLTPNFSTWRPCDQVEA----AVAWKLAIERHNGPTALILSRQN 522 (663)
T ss_pred HHHHHhcCCCCEEEccCCHHHH----HHHHHHHHhcCCCCEEEEecCCC
Confidence 67888877543 2344555444 555555555 3799999999764
No 214
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.71 E-value=0.61 Score=52.03 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=80.2
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| +....+..+.+|-..+.|+++|.-.=...... .+.
T Consensus 47 i~~v~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~----~~~-- 116 (557)
T PRK08199 47 IRVIVCRQEG---GAAMMAEAYGKLT-GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFRE----REA-- 116 (557)
T ss_pred CcEEEeccHH---HHHHHHHHHHHhc-CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCccccCC----CCc--
Confidence 3455443332 4556788888874 67888887655 55556899999999999988887532211110 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+..+|...+++.+=- ...+|++++++...+++|+. . ...||+.|+++.|
T Consensus 117 -~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 117 -FQEIDYRRMFGPMAK-----WVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred -ccccCHHHhhhhhhc-----eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 234577888887754 67888999998888888875 2 2358999999876
No 215
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=92.69 E-value=0.58 Score=52.57 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=77.2
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+..+|-|.+.+. +++.++++-=| ++...++.+.+|...+.|+++|.-.-..... ..+ .+..+|...+++.
T Consensus 49 ~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~----~~~---~~q~~d~~~l~~~ 120 (586)
T PRK06276 49 AAAHAADGYARAS-GKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLI----GND---AFQEIDALGIFMP 120 (586)
T ss_pred HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccc----CCC---CCccccHhhHHhh
Confidence 4566788888764 56777776544 5566789999999999999888743222111 011 1234688889988
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
+-- ...++++++++...+++|+. ....||+.|+|..|
T Consensus 121 ~tk-----~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 121 ITK-----HNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred hcc-----eEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 876 78889999998888888875 12358999999976
No 216
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.68 E-value=0.58 Score=52.32 Aligned_cols=118 Identities=13% Similarity=0.052 Sum_probs=79.5
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.+|++.=| ++.-.+..+.+|...+.|+++|.-.-...... .+.
T Consensus 52 i~~i~~~hE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~----~~~-- 121 (564)
T PRK08155 52 IRHILARHEQ---GAGFIAQGMARTT-GKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIG----TDA-- 121 (564)
T ss_pred ceEEEeccHH---HHHHHHHHHHHHc-CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCccccc----CCC--
Confidence 4455544333 4556678888874 67877776544 44556899999999999999887543322110 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+..+|...+++.+-- ..+++++++++...+++|+. . ...||+.|+|+.|
T Consensus 122 -~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 122 -FQEVDTYGISIPITK-----HNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred -ccccchhhhhhccce-----EEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 234577778777754 67888999998888888875 1 2359999999865
No 217
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.52 E-value=1.5 Score=48.95 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=81.1
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+... +++.++++-=| ++...++.+.+|...++|+++|.-.=...... .+
T Consensus 40 i~~i~~~hE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~~~~~----~~--- 108 (558)
T TIGR00118 40 IEHILVRHEQ---GAAHAADGYARAS-GKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIG----SD--- 108 (558)
T ss_pred ceEEEeCcHH---HHHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccC----CC---
Confidence 4455544433 3445688888764 57777777555 45556899999999999999988643322110 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
.+..+|...+++.+-- ...++++++++...+++|+. . ...||+.|+|..|
T Consensus 109 ~~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 109 AFQEADILGITMPITK-----HSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred CCcccChhhhhcCccc-----eeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 1234577888888766 78889999999888888875 1 2358999999876
No 218
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=92.48 E-value=4.4 Score=36.94 Aligned_cols=103 Identities=14% Similarity=-0.028 Sum_probs=61.2
Q ss_pred hhhhhhhccCc-eEEEEeCCcchH-HHHHHHHHhhhc-CCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcce
Q 007800 80 AADGYARSRGV-GACVVTFTVGGL-SVLNAIAGAYSE-NLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT 156 (589)
Q Consensus 80 ~A~gyar~tg~-~v~~~t~GpG~~-n~~~~l~~A~~~-~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 156 (589)
+|.|.+.+..+ .+|++ |=|.. -.+..+..+... ++|+++|.-+......-.. ++... ...|...+.+.+-
T Consensus 50 ~AiGa~~a~~~~Vv~i~--GDG~f~m~~~el~t~~~~~~~~i~~vV~nN~~~g~~~~---~~~~~--~~~d~~~lA~a~G 122 (157)
T cd02001 50 IGLGLALGLSRKVIVVD--GDGSLLMNPGVLLTAGEFTPLNLILVVLDNRAYGSTGG---QPTPS--SNVNLEAWAAACG 122 (157)
T ss_pred HHHHHHhcCCCcEEEEE--CchHHHhcccHHHHHHHhcCCCEEEEEEeCccccccCC---cCCCC--CCCCHHHHHHHCC
Confidence 66776666555 44443 44444 345667776666 5999988866544221111 11111 0134566777766
Q ss_pred eEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 157 CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 157 k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
-...++.+++++.+.+++|+ ...||+.|++..+
T Consensus 123 ~~~~~v~~~~el~~al~~a~----~~~gp~vi~v~i~ 155 (157)
T cd02001 123 YLVLSAPLLGGLGSEFAGLL----ATTGPTLLHAPIA 155 (157)
T ss_pred CceEEcCCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 66778888777766666655 4579999998764
No 219
>PRK05858 hypothetical protein; Provisional
Probab=92.46 E-value=0.72 Score=51.29 Aligned_cols=118 Identities=9% Similarity=0.050 Sum_probs=80.0
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.+|++.=| ++.-..+.+.+|...+.|+++|.-+-..... ..+.
T Consensus 43 i~~i~~rhE~---~A~~~AdGyar~t-g~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~~~~----~~~~-- 112 (542)
T PRK05858 43 IRLIDVRHEQ---TAAFAAEAWAKLT-RVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRW----GMGS-- 112 (542)
T ss_pred CCEEeeccHH---HHHHHHHHHHHhc-CCCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCcccC----CCCC--
Confidence 4455544433 4556788888874 67777776544 6666789999999999998876643221111 0111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
+..+|...+++.+-- ...++++++++...+++|+. ....||+.|++..|
T Consensus 113 -~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 113 -LQEIDHVPFVAPVTK-----FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred -Ccccchhhhhhhhhc-----eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 133577788888765 78899999999888888875 23468999999976
No 220
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.42 E-value=0.63 Score=43.44 Aligned_cols=110 Identities=10% Similarity=0.023 Sum_probs=64.4
Q ss_pred hhhhhhhccC-c-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCcc---ceeeecC-CCChHHHHHhhh
Q 007800 80 AADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILHHTIG-LPDFTQELRCFQ 153 (589)
Q Consensus 80 ~A~gyar~tg-~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~ 153 (589)
+|.|.+.+.. + .++++-=| ++.-....+..|...++|+++|.-.......-+.. ...+..+ ..+..|...+.+
T Consensus 56 ~aiGa~la~~~~~vv~i~GDG-~f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 134 (177)
T cd02010 56 GAIGAKLVYPDRKVVAVSGDG-GFMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAE 134 (177)
T ss_pred HHHHHHHhCCCCcEEEEEcch-HHHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHH
Confidence 6677666654 4 55554333 33334567888999999999997654332111000 0000011 001124566777
Q ss_pred cceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 154 AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 154 ~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
.+--...++.+++++...+++|+ ..+||+.|+++.|-
T Consensus 135 a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 171 (177)
T cd02010 135 SFGAKGYRIESADDLLPVLERAL----AADGVHVIDCPVDY 171 (177)
T ss_pred HCCCEEEEECCHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 77667788888887766666665 45799999999764
No 221
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.25 E-value=0.65 Score=52.00 Aligned_cols=118 Identities=7% Similarity=0.011 Sum_probs=78.7
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.+|++.=| ++...++.+.+|...++|+++|.-.-...... ..
T Consensus 39 i~~v~~rhE~---~A~~~Adgyar~t-gk~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~~~~~-------~~ 107 (575)
T TIGR02720 39 IHYIQVRHEE---VGALAAAADAKLT-GKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMN-------MD 107 (575)
T ss_pred CcEEEeccHH---HHHHHHHHHHHhh-CCceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccCC-------CC
Confidence 4455544333 3445566777663 56777766544 56667899999999999999988654433221 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~ 563 (589)
.+..+|...+++.+-- ...++.+++++...+++|+. ....||+.|+++.|
T Consensus 108 ~~q~id~~~~~~~vtk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 108 TFQEMNENPIYADVAV-----YNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred Ccceechhhhhhhcce-----EEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 1234577788888765 67888888877666666654 23679999999977
No 222
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=92.23 E-value=0.71 Score=43.08 Aligned_cols=117 Identities=22% Similarity=0.199 Sum_probs=65.9
Q ss_pred EEecCchhHHHHhhhhhhhccC-ceEEEEeCCcchH----HHHHHHH-HhhhcCCcEEEEeCCCCccccCCccceeeecC
Q 007800 68 LVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL----SVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIG 141 (589)
Q Consensus 68 ~v~~~hE~~A~~~A~gyar~tg-~~v~~~t~GpG~~----n~~~~l~-~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~ 141 (589)
+=....|++.+.+|.|+|...+ +-++..+.++=+. =....+. .....+.|+.+++. .+... +.+-.-||.
T Consensus 51 i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~-~g~~~-~~~G~tH~s-- 126 (178)
T PF02779_consen 51 INTGIAEQNMVGMAAGLALAGGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTR-AGLGY-GGDGGTHHS-- 126 (178)
T ss_dssp EE--S-HHHHHHHHHHHHHHSSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEE-ESGGG-STTGTTTSS--
T ss_pred EecCcchhhccceeeeeeecccccceeEeeccccccccchhhhhhhhhhhhcccceecceee-cCccc-ccccccccc--
Confidence 3456899999999999998875 6444445554333 2233444 46667778774433 22221 121122322
Q ss_pred CCChHHHHHhhhcceeEEE-EeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 142 LPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 142 ~~~~~~~~~~~~~~tk~~~-~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
.....+++.+-.+.. .+.++.++..+++.|++. ..++||||..|...
T Consensus 127 ----~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~~r~~ 174 (178)
T PF02779_consen 127 ----IEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIREPRGL 174 (178)
T ss_dssp ----SSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEEESSE
T ss_pred ----cccccccccccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEeeHHh
Confidence 234677777765433 456666666666555543 14799999999765
No 223
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=92.11 E-value=3.1 Score=38.63 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=66.6
Q ss_pred HHHhhhhhhhccCceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceee---------ecCCCChHH
Q 007800 77 AGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH---------TIGLPDFTQ 147 (589)
Q Consensus 77 A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~---------~~~~~~~~~ 147 (589)
+.-+|.|.+.+..+-|++++.--++.-.+..+..|...++|+++|.-+......-+ +.++ ........|
T Consensus 56 ~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~--~~~~~~~~~~~~~~~~~~~~~d 133 (175)
T cd02009 56 TLSTALGIALATDKPTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINNNGGGIFS--LLPQASFEDEFERLFGTPQGLD 133 (175)
T ss_pred HHHHHHHHHhcCCCCEEEEEehHHHHHhHHHHHhccccCCCeEEEEEECCCCchhe--eccCCcccchhhhhhcCCCCCC
Confidence 45577787766555444434333444447899999999999988876654321100 0000 000000124
Q ss_pred HHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 148 ~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
..++.+.+--...++.+++++...|++|++ ..+|+.|++..|
T Consensus 134 ~~~lA~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lIev~v~ 175 (175)
T cd02009 134 FEHLAKAYGLEYRRVSSLDELEQALESALA----QDGPHVIEVKTD 175 (175)
T ss_pred HHHHHHHcCCCeeeCCCHHHHHHHHHHHHh----CCCCEEEEEeCC
Confidence 566777665566788888777776666653 479999998764
No 224
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.11 E-value=0.73 Score=51.67 Aligned_cols=118 Identities=9% Similarity=0.137 Sum_probs=79.5
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcc-cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQV-TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~-~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.+|++-=|-... .+..|.+|...++|+++|.-+=..+... . .
T Consensus 50 i~~v~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~----~---~ 118 (578)
T PRK06112 50 IRQIAYRTEN---AGGAMADGYARVS-GKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTD----R---N 118 (578)
T ss_pred CcEEEeccHH---HHHHHHHHHHHHh-CCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccCC----C---C
Confidence 3455444333 3555677888774 678888875553333 4889999999999999888543222110 1 1
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
.+..+|...+++.+-- ...++.+++++...+++|+. . ...||+.|+|..|
T Consensus 119 ~~Q~~d~~~l~~~vtk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 119 AFQELDHIALFQSCTK-----WVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred CccccChhhhhccccc-----eEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 1244678888888875 77889999888887777765 1 2358999999987
No 225
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.06 E-value=0.69 Score=51.81 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=80.0
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+... +++.++++-=| ++.-.+..+.+|-..+.|+++|.-.-...... .+
T Consensus 43 i~~v~~~hE~---~A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~~~~----~~--- 111 (574)
T PRK06882 43 IEHVLVRHEQ---AAVHMADGYARST-GKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIG----TD--- 111 (574)
T ss_pred CeEEEeccHH---HHHHHHHHHHHhh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CC---
Confidence 3455443332 4446677877764 56777666444 55557899999999999988887543322110 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
.+..+|...+++.+-- ...+|.+++++...+++|+. . ...||+.|+|..|
T Consensus 112 ~~q~~d~~~l~~~vtk-----~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 112 AFQECDMLGISRPVVK-----HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred cccccchhhhhhcccc-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 1244688888888765 78899999998888888875 1 2459999999987
No 226
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=92.05 E-value=0.43 Score=51.00 Aligned_cols=114 Identities=26% Similarity=0.315 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l 300 (589)
-+++++.+++.|+++++|+++ |.+.........+.+|++.+|..+- +.......+..+.+..+ |... ....++.
T Consensus 56 WdeAl~~ia~~L~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---g~~~-~~~~di~ 129 (415)
T cd02761 56 LEEAIEKAAEILKEAKRPLFY-GLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQDS---GWPT-TTLGEVK 129 (415)
T ss_pred cHHHHHHHHHHHHhhcCCEEE-EcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHhC---CCcc-ccHHHHH
Confidence 467899999999999999887 4444443456778899999997432 11111112211111110 1111 1233444
Q ss_pred hhcCEEEEeCCCcCCcccccc-c--c-----c----CCCCceEEEcCCceee
Q 007800 301 ESADAYVFVGPIFNDYSSVGY-S--L-----L----IKKEKAIIVQPHRVTV 340 (589)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~-~--~-----~----~~~~~~i~id~d~~~~ 340 (589)
.++|+||++|+.+.+.....+ . . . .++.++|.||+.....
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~t 181 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDT 181 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcch
Confidence 589999999987654432211 1 0 0 2345899999866543
No 227
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.04 E-value=0.67 Score=51.85 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=81.0
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+... +++-+|++-=| ++.-.+..+.+|...+.|+++|.-.-...... .+
T Consensus 43 i~~v~~rhE~---~A~~mAdgyar~t-g~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~----~~--- 111 (572)
T PRK08979 43 IEHILVRHEQ---AAVHMADGYARAT-GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIG----ND--- 111 (572)
T ss_pred CeEEEeCcHH---HHHHHHHHHHHHh-CCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccccC----CC---
Confidence 4455544333 4456677887764 56777666434 55557899999999999988887543322110 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~~ 564 (589)
.+..+|...+++.+-- ...+|++++++...+++|+. . ...||+.|+|..|-
T Consensus 112 ~~q~~d~~~~~~~itk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 112 AFQECDMIGISRPVVK-----HSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred CCcccchhHHhhhcee-----EEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 1244688888888765 78899999999888888875 2 24589999998773
No 228
>PRK12474 hypothetical protein; Provisional
Probab=91.97 E-value=0.87 Score=50.31 Aligned_cols=119 Identities=11% Similarity=0.139 Sum_probs=79.4
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEc-chhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIG-DGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~G-DGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.+|++- --++.-.+..+.+|...+.|+++|.-........ .+.
T Consensus 44 i~~i~~rhE~---~A~~mAdgYaR~t-g~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~----~~~-- 113 (518)
T PRK12474 44 MRPVLCLFEG---VVTGAADGYGRIA-GKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQ----YDA-- 113 (518)
T ss_pred ceEEEecchH---HHHHHHHHHHHHh-CCCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhhcC----CCC--
Confidence 3455443332 3445666777764 567665553 3356667889999999999999988654322110 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~~ 564 (589)
+...|...+++.+-- ...++.+++++...+++|+. ....||++|+++.|-
T Consensus 114 -~q~~d~~~~~~~vtk-----~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 114 -PLTSDIDGFARPVSR-----WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred -ccccCHHHhhhcccc-----eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 133588888887764 67889999999998888885 234589999999874
No 229
>PRK08266 hypothetical protein; Provisional
Probab=91.92 E-value=2.4 Score=47.15 Aligned_cols=121 Identities=11% Similarity=0.102 Sum_probs=80.2
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+... +++.+|++-=| ++...+..+.+|...+.|+++|.-.=..+... .+...
T Consensus 44 i~~v~~~hE~---~A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~----~~~~~ 115 (542)
T PRK08266 44 IRVIHTRHEQ---AAGYMAFGYARST-GRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIG----KGRGH 115 (542)
T ss_pred CeEEeeccHH---HHHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhhcc----CCCCc
Confidence 4455544333 3445788888874 56777776444 55557899999999999988887532221110 10000
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
....+|...+++.+-- ...++.+++++...+++|+. ....||+.|+++.|
T Consensus 116 ~~~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 116 LHEMPDQLATLRSFTK-----WAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred ceecccHhhHHhhhcc-----eEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 0112478888888865 78899999998888888875 12469999999987
No 230
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.82 E-value=0.68 Score=51.68 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+..+|-|.+... +++.+|++-=| ++...+..|.+|-..+.|+++|.-.-....+ ..+ .+..+|...+++.
T Consensus 56 ~A~~~Adgyar~t-g~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~----~~~---~~q~~d~~~~~~~ 127 (561)
T PRK06048 56 AAAHAADGYARAT-GKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMI----GND---AFQEADITGITMP 127 (561)
T ss_pred HHHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCcccc----CCC---CccccchhhhccC
Confidence 4567788888774 57777776544 5555789999999999999888753221111 011 1234577788877
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
+-- ..++|++++++...+++|+. ....||+.|+|+.|
T Consensus 128 itk-----~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 128 ITK-----HNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred cce-----EEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 754 67889999998888888775 12358999999866
No 231
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=91.77 E-value=0.75 Score=51.59 Aligned_cols=119 Identities=10% Similarity=0.058 Sum_probs=78.5
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEc-chhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIG-DGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~G-DGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+... +++.+|++- --++.-.+..|.+|...+.|+++|.-.=..+.. ..+
T Consensus 40 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~~~~~~~----~~~--- 108 (579)
T TIGR03457 40 IRFIPVVHEQ---GAGHMADGFARVT-GRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTI----GLG--- 108 (579)
T ss_pred CeEEEeccHH---HHHHHHHHHHHHh-CCCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEeCCCccccC----CCC---
Confidence 3455443332 3445677777664 567777664 336666789999999999998888643222111 011
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
.+..+|...+++.+-- ...++.+++++...+++|+. ....||+.|+++.|-
T Consensus 109 ~~Q~~d~~~l~~~vtk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 109 GFQEADQLPMFQEFTK-----YQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred CCcccchhhhhhccee-----EEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 1234577888888765 77888999988887777765 234699999999773
No 232
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=91.72 E-value=1.7 Score=40.47 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=63.3
Q ss_pred HhhhhhhhccC-c-eEEEEeCCcchH--HHHHHHHHhhhcCCcEEEEeCCCCccccCCccceee---ec-CCCChHHHHH
Q 007800 79 YAADGYARSRG-V-GACVVTFTVGGL--SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH---TI-GLPDFTQELR 150 (589)
Q Consensus 79 ~~A~gyar~tg-~-~v~~~t~GpG~~--n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 150 (589)
-+|.|.+.+.. + .++++ |=|.. +.+..+..|...++|+++|.-+......-....... .. ......|..+
T Consensus 58 ~~AiGa~la~p~~~Vv~i~--GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVI--GDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhCCCCCEEEEe--cChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHH
Confidence 35666666553 3 44443 44443 225788889999999999987755421111000000 00 0001135677
Q ss_pred hhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 151 ~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
+++.+--...++.+++++.+ +.+|++.|.+.+||..|++-
T Consensus 136 ~a~a~G~~~~~v~~~~~l~~-~~~al~~a~~~~gp~lI~v~ 175 (178)
T cd02008 136 LVRAIGVKRVVVVDPYDLKA-IREELKEALAVPGVSVIIAK 175 (178)
T ss_pred HHHHCCCCEEEecCccCHHH-HHHHHHHHHhCCCCEEEEEe
Confidence 77877666777888777763 34555555556799998863
No 233
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.65 E-value=0.71 Score=51.59 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=81.8
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++..+.-. .+.-+|-|.+... +++-+|++-=| ++.-.++.+.+|...+.|+++|.-.-...... .+
T Consensus 49 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~----~~--- 117 (566)
T PRK07282 49 IRHILARHEQ---GALHEAEGYAKST-GKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIG----KD--- 117 (566)
T ss_pred ceEEEecCHH---HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccCC----CC---
Confidence 4565554433 4556677877764 56766666444 55557899999999999999888654433321 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~~ 564 (589)
.+..+|...+++.+-- ...++.+++++...+++|+. . ...||+.|++..|-
T Consensus 118 ~~q~~d~~~~~~~itk-----~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 118 AFQEADIVGITMPITK-----YNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred CccccChhchhcCCCc-----eeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 1234577778888765 78889999998888888876 1 23589999998873
No 234
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=91.64 E-value=1.1 Score=46.61 Aligned_cols=112 Identities=17% Similarity=0.057 Sum_probs=67.7
Q ss_pred HHHhhhhhhhccCceEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhh
Q 007800 77 AGYAADGYARSRGVGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ 153 (589)
Q Consensus 77 A~~~A~gyar~tg~~v~~~t~GpG~~n~---~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (589)
|+.+|.|..+.....++++..|=|..+. .-++..|..-++|+|+|.-+.... ..... .+... ..+..++.+
T Consensus 131 AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~-~~~~~--~~~~~---~~d~~~~a~ 204 (341)
T TIGR03181 131 AAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWA-ISVPR--SKQTA---APTLAQKAI 204 (341)
T ss_pred HHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCc-cccch--hhhhC---CcCHHHHHh
Confidence 4444444333322366666778887762 345667888999999998764321 11100 00011 123455666
Q ss_pred cceeEEEEeCChh--hHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 154 AITCSQAVVNNLG--DAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 154 ~~tk~~~~v~~~~--~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
.+--...++...+ .+.+.+.+|++.|...+||+.|++-..-
T Consensus 205 a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R 247 (341)
T TIGR03181 205 AYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYR 247 (341)
T ss_pred hCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 6655566676555 4478889999999888899999996443
No 235
>PRK06154 hypothetical protein; Provisional
Probab=91.51 E-value=1.1 Score=49.99 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=77.2
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcC-CCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAK-DKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~-~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~ 507 (589)
.+++....-. .+.-+|-|.+.... +++.+|++.=| ++...+..|.+|...+.|+++|.-....... +..
T Consensus 55 i~~i~~rhE~---~A~~mAdgyar~t~g~~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~------~~~ 125 (565)
T PRK06154 55 IRPVIARTER---VAVHMADGYARATSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGST------DVA 125 (565)
T ss_pred CeEEeeCcHH---HHHHHHHHHHHhcCCCCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccc------cCC
Confidence 4455544333 34456677777642 47777765434 5555789999999999999988754432111 000
Q ss_pred CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 508 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 508 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
...|...+++.+-- ...+|++++++.+.+++|+. . ...||+.|+|..|
T Consensus 126 ---~~~d~~~~~~~vtk-----~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 126 ---PNFESLRNYRHITK-----WCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred ---CCcchhhhHhhcce-----eEEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchH
Confidence 12355567777654 67889999998888888875 2 2469999999977
No 236
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=91.46 E-value=0.6 Score=44.69 Aligned_cols=146 Identities=12% Similarity=-0.054 Sum_probs=78.8
Q ss_pred EEEecCCcchHHHHHhhhcCCCCeEEecCch---hHHHHhhhhhhhccC-c-eEEEEeCCcchHHHHHHHHHhhhcCCcE
Q 007800 44 DVFSVPGDFNLTLLDHLIAEPELNLVGCCNE---LNAGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPV 118 (589)
Q Consensus 44 ~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE---~~A~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~~l~~A~~~~~Pl 118 (589)
.++.=.|.+...+...+.-...-+++.+..= ..+.-+|.|.+.+.. + .+|++-=| ++.-....+..|...++|+
T Consensus 17 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv 95 (205)
T cd02003 17 VVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDG-SYLMLHSEIVTAVQEGLKI 95 (205)
T ss_pred EEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccc-hhhccHHHHHHHHHcCCCC
Confidence 3444445555444444432223455543221 112336677665543 4 44443222 4443457788899999999
Q ss_pred EEEeCCCCccccCC--------ccceeeecC----------CCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhH
Q 007800 119 ICIVGGPNSNDYGT--------NRILHHTIG----------LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (589)
Q Consensus 119 lvI~g~~~~~~~~~--------~~~~~~~~~----------~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~ 180 (589)
++|.-+......-+ ......... .....|...+.+.+--...++.+++++.+.+++|+
T Consensus 96 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~---- 171 (205)
T cd02003 96 IIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAK---- 171 (205)
T ss_pred EEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHH----
Confidence 88876654321100 000000000 00113556777777666788888777766666664
Q ss_pred hcCCcEEEEeCCCC
Q 007800 181 KESKPVYISISCNL 194 (589)
Q Consensus 181 ~~~gPV~i~iP~dv 194 (589)
..+||+.|++..|-
T Consensus 172 ~~~gp~lIeV~v~~ 185 (205)
T cd02003 172 ASDRTTVIVIKTDP 185 (205)
T ss_pred hCCCCEEEEEEeec
Confidence 45799999998764
No 237
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.35 E-value=0.86 Score=50.91 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=74.7
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|-|.+... +++.+|++-=| ++.-.+..+.+|...+.|+++|.-.=..... ..+ .+..+|...+++.
T Consensus 52 ~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~----~~~---~~q~~d~~~~~~~ 123 (563)
T PRK08527 52 AAVHAADGYARAS-GKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLI----GTD---AFQEIDAVGISRP 123 (563)
T ss_pred HHHHHHHHHHhhh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc----CCC---CCcccchhhhhhc
Confidence 4556777887764 56766665434 5555789999999999998887742221111 011 1244677778888
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
+-- ...+|++++++..+|++|+. ....||+.|++..|
T Consensus 124 ~tk-----~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 124 CVK-----HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred ccc-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 764 67889999999999998886 12448999999976
No 238
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=91.31 E-value=0.95 Score=50.69 Aligned_cols=108 Identities=10% Similarity=-0.001 Sum_probs=72.2
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|-|.+.+ .+++.+|+++=| +....++.+.+|...++|+++|.-+-...... .+. +...|...+++.
T Consensus 52 ~A~~~Adgyar~-tg~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~----~~~---~Q~~d~~~l~~~ 123 (574)
T PRK09124 52 VAAFAAGAEAQL-TGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIG----SGY---FQETHPQELFRE 123 (574)
T ss_pred HHHHHHHHHHHh-hCCcEEEEECCCCCHHHHHHHHHHHhhcCCCEEEEecCCccccCC----CCC---ccccChhhhccc
Confidence 344567777776 367888887554 55556889999999999998887643321110 111 233577777776
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~ 563 (589)
+-. ...++.+++++...+++++. ....||+.|+++.|
T Consensus 124 itk-----~~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~D 162 (574)
T PRK09124 124 CSH-----YCELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGD 162 (574)
T ss_pred cee-----eeEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 643 56778889887666666654 23569999999866
No 239
>PRK07064 hypothetical protein; Provisional
Probab=91.11 E-value=1.6 Score=48.55 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=74.9
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|.|.+.+. +++.+|++-=| +..-.+..+.+|-..+.|+++|.-+=......+. ...+. ..+|...+++.
T Consensus 52 ~A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~--~~~~~--~~~d~~~~~~~ 126 (544)
T PRK07064 52 GAVNMADAHARVS-GGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQD--LGYIH--EAPDQLTMLRA 126 (544)
T ss_pred HHHHHHHHHHHhc-CCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccccCC--Ccccc--cccCHHHHhhh
Confidence 3445677888774 56766666444 4555689999999999999988864332211000 00011 12488888888
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
+-- ...++++++++...+++|+. ....||+.|+++.|
T Consensus 127 ~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 127 VSK-----AAFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred hcc-----eEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 765 78899999998888887775 22369999999976
No 240
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=90.94 E-value=1 Score=50.57 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=79.7
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+... +++.+|++-=| ++...+..|.+|...+.|+++|.-.=..+... .+.
T Consensus 52 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~----~~~-- 121 (585)
T CHL00099 52 IKHILVRHEQ---GAAHAADGYARST-GKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIG----TDA-- 121 (585)
T ss_pred ceEEEecCHH---HHHHHHHHHHHhc-CCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CCC--
Confidence 3455544332 4556677887764 67777776544 55556899999999999999988654332221 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+..+|...+++.+-- ...+|.+++++...+++|+. . ...||+.|++..|
T Consensus 122 -~q~~d~~~~~~~~tk-----~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 122 -FQEVDIFGITLPIVK-----HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred -ccccchhhhhcCcee-----EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 233566677777654 67889999999888888875 1 2458999999877
No 241
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=90.88 E-value=2 Score=39.59 Aligned_cols=99 Identities=18% Similarity=0.097 Sum_probs=63.5
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhccc-HHHHHH-HHHh--------CCCeEEEEEeCCchhhhhhhcCCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEIST-MIRC--------GQRSIIFLINNGGYTIEVEIHDGPYNVIKN 512 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~~el~t-a~~~--------~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~ 512 (589)
..++.|.|+++. ++++++-+.=+.|+.. ...|.+ +.+. ++|++++. ..++++. ++.. +.
T Consensus 55 ~~vg~AaGlA~~--G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~-~~gg~~~-----~G~t---hs 123 (167)
T cd07036 55 GIVGLAVGAAMN--GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRG-PNGGGIG-----GGAQ---HS 123 (167)
T ss_pred HHHHHHHHHHHc--CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEE-eCCCCCC-----cChh---hh
Confidence 467778888875 5566665556666653 333322 3333 58877765 6665442 2221 22
Q ss_pred CChHHHHHHc-cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEE
Q 007800 513 WDYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 559 (589)
Q Consensus 513 ~d~~~la~a~-G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vie 559 (589)
..+..+.+++ |. ..+...|+.|++..++.+++ .++|+++-
T Consensus 124 ~~~~a~lr~iPg~-----~V~~Psd~~e~~~~l~~~~~--~~~P~~~~ 164 (167)
T cd07036 124 QSLEAWFAHIPGL-----KVVAPSTPYDAKGLLKAAIR--DDDPVIFL 164 (167)
T ss_pred hhHHHHHhcCCCC-----EEEeeCCHHHHHHHHHHHHh--CCCcEEEE
Confidence 3445677777 44 77777899999999999996 77898874
No 242
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.86 E-value=1 Score=50.53 Aligned_cols=108 Identities=12% Similarity=0.053 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|-|.+.+. +++.+|++.=| ++...+..+.+|-..+.|+++|.-+=..... ..+ .+..+|...+++.
T Consensus 52 ~A~~mAdgyar~t-gk~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~----~~~---~~Qe~d~~~l~~~ 123 (578)
T PRK06546 52 AAAFAAAAEAQLT-GKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQI----GSG---FFQETHPDRLFVE 123 (578)
T ss_pred HHHHHHHhHHHhh-CCceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccc----CCC---CccccChhhhccc
Confidence 3445667777764 57777776544 6666789999999999998887753221111 011 1233566677776
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~ 563 (589)
+-- ...+|++++++...+++|+. ....||+.|+++.|
T Consensus 124 ~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 124 CSG-----YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred cee-----eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 654 67889999998888888775 33569999999976
No 243
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=90.73 E-value=1.1 Score=50.17 Aligned_cols=124 Identities=12% Similarity=0.104 Sum_probs=80.1
Q ss_pred eeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc-CCCCC
Q 007800 431 GYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH-DGPYN 508 (589)
Q Consensus 431 ~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~-~~~~~ 508 (589)
+++....-. .+.-+|-|.+... +++.+|++-=| ++...+..|.+|...+.|+++|.-+-......+.-. +....
T Consensus 52 ~~V~~rhE~---~A~~~Adgyar~t-gk~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~ 127 (569)
T PRK08327 52 EFVICPHEI---VAISMAHGYALVT-GKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIH 127 (569)
T ss_pred cEEecCCHH---HHHHHHHHHHHhh-CCCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcc
Confidence 455444332 4455677777764 56666665434 555568999999999999999887543221110000 00011
Q ss_pred CCCC-CChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~-~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
.+.. +|...+++.+-- ...++++++++...+++|+. . ...||+.|||+.|
T Consensus 128 ~~qe~~d~~~~~~~vtk-----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 128 WTQEMRDQGGLVREYVK-----WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred cchhhhhHHHHHhhhhh-----hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 1233 588888888765 77889999999888888875 2 2468999999965
No 244
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=90.71 E-value=1.2 Score=50.24 Aligned_cols=119 Identities=6% Similarity=-0.035 Sum_probs=78.6
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.+|++-=| +....++.+.+|-..++|+++|.-+=..... ..+.
T Consensus 43 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~~~----~~~~-- 112 (597)
T PRK08273 43 PEFVQARHEE---MAAFMAVAHAKFT-GEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAAL----GGHY-- 112 (597)
T ss_pred CeEEEeccHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchhhc----CCCC--
Confidence 4455544433 3445677777764 56777766544 5555789999999999998888743221111 0111
Q ss_pred CCCCCChHHHHHHcc-CCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIH-NGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G-~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
+..+|...+++.+- - ...++++++++...+++|+. ....||+.|+++.|-
T Consensus 113 -~q~~d~~~l~~~vt~k-----~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 113 -QQEVDLQSLFKDVAGA-----FVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred -CCccCHHHHHHHHHHH-----HeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcch
Confidence 23457778888875 4 67889999888777777765 235689999999773
No 245
>PRK06163 hypothetical protein; Provisional
Probab=90.60 E-value=2.3 Score=40.64 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=62.8
Q ss_pred HHhhhhhhhccC-ceEEEEeCCcc-hHHHHHHHHHhhh-cCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhc
Q 007800 78 GYAADGYARSRG-VGACVVTFTVG-GLSVLNAIAGAYS-ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA 154 (589)
Q Consensus 78 ~~~A~gyar~tg-~~v~~~t~GpG-~~n~~~~l~~A~~-~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (589)
.-+|.|.+.+.. +-|++++ |=| +.-.+..+..+.. .++|+++|.-+........+. .... ....|...+.+.
T Consensus 63 lpaAiGaalA~p~r~Vv~i~-GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~---~~~~-~~~~Df~~lA~a 137 (202)
T PRK06163 63 FPIALGVALAQPKRRVIALE-GDGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGGQ---PTLT-SQTVDVVAIARG 137 (202)
T ss_pred HHHHHHHHHhCCCCeEEEEE-cchHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCc---cCCC-CCCCCHHHHHHH
Confidence 346677666553 3333333 444 3445677777754 478988887765433221110 0010 111345666666
Q ss_pred ceeE-EEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 155 ITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 155 ~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
+--. ..++++++++...+++|+ ...+|+.|++..|-
T Consensus 138 ~G~~~~~~v~~~~el~~al~~a~----~~~~p~lIeV~i~~ 174 (202)
T PRK06163 138 AGLENSHWAADEAHFEALVDQAL----SGPGPSFIAVRIDD 174 (202)
T ss_pred CCCceEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 6543 567888887777777665 44799999998763
No 246
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=90.57 E-value=0.79 Score=47.88 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHH---HHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHH
Q 007800 441 IGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTM---IRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTG 517 (589)
Q Consensus 441 mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta---~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~ 517 (589)
=|-+++.|.|+.++. +++.++++=-.++.-..+-|... .-|++|++++|--=+.++... .+-.....---..
T Consensus 35 E~~av~iaaG~~lat-G~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~d----epqh~~~G~~t~~ 109 (361)
T TIGR03297 35 EGAAVGLAAGAYLAT-GKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHD----EPQHVKQGRITLS 109 (361)
T ss_pred chHHHHHHHHHHHhc-CCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCC----CchhhHHhHHHHH
Confidence 368899999999985 45555555566666666666555 448999888876655555310 0000001112467
Q ss_pred HHHHccCCCCCccEEEe-CCHHHHHHHHHHhhh--cCCCCeEEEEEE
Q 007800 518 LVNAIHNGEGKCWTAKV-RSEDELTEAMKTATG--EQKDSLCFIEVF 561 (589)
Q Consensus 518 la~a~G~~~~~~~~~~v-~~~~~l~~al~~a~~--~~~~gp~viev~ 561 (589)
+-+++|+ ++..+ ++.++..+.+++++. .+.++|+.+-|.
T Consensus 110 lL~~~~i-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 110 LLDALEI-----PWEVLSTDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHcCC-----CEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 8899999 88888 456555555555543 236788777554
No 247
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=90.05 E-value=2.8 Score=42.07 Aligned_cols=154 Identities=14% Similarity=-0.000 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCC---CEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccC-c-eEEEEeCCcchHH
Q 007800 29 LGRHLARRLVEIGA---KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGLS 103 (589)
Q Consensus 29 ~a~~i~~~L~~~GV---~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~-~v~~~t~GpG~~n 103 (589)
.-.+|-+.|.+.|. +.|+...-+. ....-... ......+.| ..|.-+|.|...+.. + .++++-=|-+..-
T Consensus 18 il~al~~al~~l~~~~~~~ivvsdiGc-~~~~~~~~---~~~~~~~~~-G~alp~A~GaklA~Pd~~VV~i~GDG~~f~i 92 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVVSGIGC-SSNLPEFL---NTYGIHGIH-GRVLPIATGVKWANPKLTVIGYGGDGDGYGI 92 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCch-hhhhhhhc---cCCCccccc-ccHHHHHHHHHHHCCCCcEEEEECChHHHHc
Confidence 34677788888765 3444433333 33222222 234456677 666778888777764 3 4444333334566
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccc------eee----ecCCCC-hHHHHHhhhccee-EEEEe--CChhhHH
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRI------LHH----TIGLPD-FTQELRCFQAITC-SQAVV--NNLGDAH 169 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~------~~~----~~~~~~-~~~~~~~~~~~tk-~~~~v--~~~~~~~ 169 (589)
.++.+..|...++|+++|.-+......-.++. ..+ ..+..+ -.|...+.+.+-- |..+. .+++++
T Consensus 93 g~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l- 171 (279)
T PRK11866 93 GLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHL- 171 (279)
T ss_pred cHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHH-
Confidence 78999999999999999886643321111100 000 011000 0144455554322 22221 445554
Q ss_pred HHHHHHHHHhHhcCCcEEEEeC
Q 007800 170 ELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 170 ~~l~~A~~~a~~~~gPV~i~iP 191 (589)
.++++.|...+||++|++-
T Consensus 172 ---~~~l~~Al~~~Gps~I~v~ 190 (279)
T PRK11866 172 ---KEIIKEAIKHKGFSFIDVL 190 (279)
T ss_pred ---HHHHHHHHhCCCCEEEEEe
Confidence 5555555566899999975
No 248
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=89.74 E-value=1.2 Score=49.05 Aligned_cols=82 Identities=23% Similarity=0.271 Sum_probs=56.5
Q ss_pred ccchhhHHHHHHHHhhh-----------cCCCcEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcC
Q 007800 438 YGSIGWSVGATLGYAQA-----------AKDKRVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHD 504 (589)
Q Consensus 438 ~g~mG~~l~~aiGaala-----------~~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~ 504 (589)
..|||-|.-.||-.++- .++++|+||.|||-.=- +...|.-|.+++++-+++|+|=+--.. +
T Consensus 191 TvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrL-----D 265 (887)
T COG2609 191 TVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRL-----D 265 (887)
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhc-----C
Confidence 46788888888766542 24789999999998755 678888899999999999998663322 2
Q ss_pred CCCCCC--CCCChHHHHHHccC
Q 007800 505 GPYNVI--KNWDYTGLVNAIHN 524 (589)
Q Consensus 505 ~~~~~~--~~~d~~~la~a~G~ 524 (589)
++-..- ---.|+.+.++.|+
T Consensus 266 gpVrgngkiiqelE~~FrgAGW 287 (887)
T COG2609 266 GPVRGNGKIIQELEGIFRGAGW 287 (887)
T ss_pred CcccCCchhHHHHHHHhccCCc
Confidence 211110 01156667777776
No 249
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.55 E-value=14 Score=41.79 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=88.6
Q ss_pred ccHHHHHHHHHHHcC--CCEEEec----CCcchHHHHHhhhc-CCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCC
Q 007800 27 GTLGRHLARRLVEIG--AKDVFSV----PGDFNLTLLDHLIA-EPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFT 98 (589)
Q Consensus 27 ~~~a~~i~~~L~~~G--V~~vfg~----pG~~~~~l~~al~~-~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~G 98 (589)
.+..+++.+.|.+.. -..|+++ +|+. . ++.|.+ .++=-+=...-|++++.+|.|.|. .|. .++.+ ..
T Consensus 319 ~~~~~~f~~~L~~la~~d~~iv~isadl~~~~--~-~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~-~G~~P~v~~-f~ 393 (641)
T PRK12571 319 PSYTSVFGEELTKEAAEDSDIVAITAAMPLGT--G-LDKLQKRFPNRVFDVGIAEQHAVTFAAGLAA-AGLKPFCAV-YS 393 (641)
T ss_pred hhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC--C-hHHHHHhCCCcccccCccHHHHHHHHHHHHH-CCCEEEEEe-hH
Confidence 355666666666542 2345554 3332 1 233432 233123445789999999999998 565 65554 44
Q ss_pred cchHHHHHHH-HHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHHHH
Q 007800 99 VGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAI 176 (589)
Q Consensus 99 pG~~n~~~~l-~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~ 176 (589)
+=+.-+...| .++...+.||+++....... +.+..-| +...++.+++.+--. ...+.++.++..+++.|+
T Consensus 394 ~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~--g~dG~TH------q~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~ 465 (641)
T PRK12571 394 TFLQRGYDQLLHDVALQNLPVRFVLDRAGLV--GADGATH------AGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAA 465 (641)
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEECCCcC--CCCCccc------cccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 4334566666 34677899999886222211 1111122 233456788877654 335667777766666655
Q ss_pred HHhHhcCCcEEEEeCCCC
Q 007800 177 STALKESKPVYISISCNL 194 (589)
Q Consensus 177 ~~a~~~~gPV~i~iP~dv 194 (589)
+. ..+|+||.+|...
T Consensus 466 ~~---~~~P~~ir~~r~~ 480 (641)
T PRK12571 466 AH---DDGPIAVRFPRGE 480 (641)
T ss_pred hC---CCCcEEEEEecCc
Confidence 42 3799999999764
No 250
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=89.52 E-value=1.1 Score=48.25 Aligned_cols=119 Identities=14% Similarity=0.137 Sum_probs=74.6
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|-|.+.+. +++.+|++-=| +..-.+..+.+|...+.|+++|.-+-..... ..+.
T Consensus 39 i~~v~~~hE~---~A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~----~~~~-- 108 (432)
T TIGR00173 39 LRVHVHIDER---SAGFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELR----GCGA-- 108 (432)
T ss_pred cEEEEecCCc---cHHHHHHHHHhcc-CCCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHh----CCCC--
Confidence 3455444433 2334577877764 56777666544 5555689999999999999988765443221 0111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHH------HHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDE------LTEAMKTATG---EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~------l~~al~~a~~---~~~~gp~viev~~~~ 564 (589)
+..+|...+++.+-- ...+|.++++ +...+++|+. ....||+.|+|+.|-
T Consensus 109 -~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 109 -NQTIDQPGLFGSYVR-----WSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred -CcccchhhHHhhccc-----eeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 234577777777764 6677777665 4444555543 234589999999764
No 251
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=89.52 E-value=8.1 Score=36.17 Aligned_cols=112 Identities=17% Similarity=0.082 Sum_probs=66.7
Q ss_pred HHHhhhhhhhccC-ceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCC--------ccceeeecCCCChHH
Q 007800 77 AGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFTQ 147 (589)
Q Consensus 77 A~~~A~gyar~tg-~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~--------~~~~~~~~~~~~~~~ 147 (589)
+.-+|.|.+.+.. +-|++.+.--++.-.+..|..|...++|+++|.-+......-+ +.... .......|
T Consensus 55 ~lp~aiGa~la~~~~~vv~i~GDG~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~--~~~~~~~d 132 (186)
T cd02015 55 GLPAAIGAKVARPDKTVICIDGDGSFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSH--TTLDSNPD 132 (186)
T ss_pred hHHHHHHHHHhCCCCeEEEEEcccHHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceee--ccCCCCCC
Confidence 4446777666553 4333333323445556788889999999988877654321100 00000 00000124
Q ss_pred HHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 148 ~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
...+.+.+--...++.+++++.+.+++|+ ...||+.|++..|-
T Consensus 133 ~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 175 (186)
T cd02015 133 FVKLAEAYGIKGLRVEKPEELEAALKEAL----ASDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHHHCCCceEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 56777777777888888776655555554 45799999998874
No 252
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=89.30 E-value=1.7 Score=39.75 Aligned_cols=109 Identities=19% Similarity=0.067 Sum_probs=60.8
Q ss_pred HHhhhhhhhccC-c-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceee----e-cCCCChHHHHH
Q 007800 78 GYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH----T-IGLPDFTQELR 150 (589)
Q Consensus 78 ~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~----~-~~~~~~~~~~~ 150 (589)
.-+|.|.+.... + .+|++-=| ++...+.++..|...+.|+++|.-+............+. . .......+..+
T Consensus 52 ~~~a~Gaa~a~~~~~vv~~~GDG-~~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 130 (168)
T cd00568 52 LPAAIGAALAAPDRPVVCIAGDG-GFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAA 130 (168)
T ss_pred HHHHHHHHHhCCCCcEEEEEcCc-HHhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHH
Confidence 346677776653 4 44443222 333366888889888999999887644321111000000 0 00001224566
Q ss_pred hhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 151 ~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
+++.+--...++.+++++ .+|++.+.+..||+.|++.
T Consensus 131 ~a~~~G~~~~~v~~~~~l----~~a~~~a~~~~~p~~i~v~ 167 (168)
T cd00568 131 LAEAYGAKGVRVEDPEDL----EAALAEALAAGGPALIEVK 167 (168)
T ss_pred HHHHCCCeEEEECCHHHH----HHHHHHHHhCCCCEEEEEE
Confidence 777665556677776655 4455555566899999875
No 253
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=89.18 E-value=4.8 Score=40.93 Aligned_cols=156 Identities=15% Similarity=0.008 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHcCC--CEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc--eEEEEeCCcch--
Q 007800 28 TLGRHLARRLVEIGA--KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV--GACVVTFTVGG-- 101 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV--~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~--~v~~~t~GpG~-- 101 (589)
..-..+.+.|.+.|+ +.+.-+.|.......-...+ ...+++.| ..+.-+|.|.+.+... .+|+ +|=|.
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~---~~~~~g~m-G~alpaAiGaklA~pd~~VV~i--~GDG~~~ 101 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL---SHGLHTLH-GRAIAFATGAKLANPDLEVIVV--GGDGDLA 101 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc---cCccchhh-ccHHHHHHHHHHHCCCCcEEEE--eCccHHH
Confidence 456788899999877 34444555544332211111 22333344 3356677887777643 3333 35553
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCccccCCccc------eee----ecCCC-ChHHHHHhhhccee-EE--EEeCChhh
Q 007800 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI------LHH----TIGLP-DFTQELRCFQAITC-SQ--AVVNNLGD 167 (589)
Q Consensus 102 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~------~~~----~~~~~-~~~~~~~~~~~~tk-~~--~~v~~~~~ 167 (589)
.-.++-+..|...++|+++|.-+......-.++. ... ..+.. ...|...+.+.+-. +. .++.++++
T Consensus 102 ~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~e 181 (301)
T PRK05778 102 SIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQ 181 (301)
T ss_pred hccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHH
Confidence 2446778899999999999986644321111100 000 01100 11244555554432 22 25777777
Q ss_pred HHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 168 AHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 168 ~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
+...|++|+ ..+||++|++...
T Consensus 182 L~~ai~~A~----~~~GpalIeV~~~ 203 (301)
T PRK05778 182 LVELIKKAI----SHKGFAFIDVLSP 203 (301)
T ss_pred HHHHHHHHH----hCCCCEEEEEcCC
Confidence 766666665 4589999998644
No 254
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=89.14 E-value=12 Score=38.52 Aligned_cols=152 Identities=19% Similarity=0.100 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHHHcCC--CEEEecCCcc-----hHHHHHhhhc-CCCCeEEe-cCchhHHHHhhhhhhhccCceEEEEeC
Q 007800 27 GTLGRHLARRLVEIGA--KDVFSVPGDF-----NLTLLDHLIA-EPELNLVG-CCNELNAGYAADGYARSRGVGACVVTF 97 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV--~~vfg~pG~~-----~~~l~~al~~-~~~i~~v~-~~hE~~A~~~A~gyar~tg~~v~~~t~ 97 (589)
++..+++.+.|.+..- +.++.+-.+- ....++.|.+ .|+-+|+. ...|++++.+|.|.|....+.++.. .
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~-~ 82 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEG-M 82 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEe-e
Confidence 4556666666666533 3455443332 1334555554 23335554 4799999999999999755555532 2
Q ss_pred Ccch-HHHHHHHHH--hhh-------cCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEE-EeCChh
Q 007800 98 TVGG-LSVLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLG 166 (589)
Q Consensus 98 GpG~-~n~~~~l~~--A~~-------~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~-~v~~~~ 166 (589)
.+-. .-++--|.+ |+. -++||++..+.-.. .+.+. -|+ +.. ..+++.+-.... .+.++.
T Consensus 83 ~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~--~~~G~-tHs-----~~~--ea~~~~iPgl~V~~Psd~~ 152 (327)
T CHL00144 83 NMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVG--RQLGA-EHS-----QRL--ESYFQSVPGLQIVACSTPY 152 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCC--CCCCc-ccc-----ccH--HHHHhcCCCCEEEEeCCHH
Confidence 3222 233333322 333 27898887543211 11221 121 112 377887766543 456777
Q ss_pred hHHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 167 DAHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 167 ~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
++..+++.|++ .++||||..|..
T Consensus 153 d~~~~l~~a~~----~~~Pv~ire~~~ 175 (327)
T CHL00144 153 NAKGLLKSAIR----SNNPVIFFEHVL 175 (327)
T ss_pred HHHHHHHHHHh----CCCcEEEEEcHH
Confidence 77777766653 579999984433
No 255
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=89.02 E-value=1.8 Score=47.94 Aligned_cols=120 Identities=15% Similarity=0.217 Sum_probs=76.9
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| ++.-.++.+.+|-..+.|+++|.-.-. +.. ...+.+
T Consensus 49 i~~i~~~hE~---~A~~~Adgyar~t-g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~-~~~---~~~~~~- 119 (530)
T PRK07092 49 FRYVLGLQEA---VVVGMADGYAQAT-GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQA-RSI---LPFEPF- 119 (530)
T ss_pred CCEEEEccHH---HHHHHHHHHHHHh-CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCc-ccc---cCccch-
Confidence 4455544433 3445788888874 57777766333 445568999999999999887765322 111 000011
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~~ 564 (589)
....|...+.+.+-- ...++.+++++.+.+++|+. ....||+.|++..|-
T Consensus 120 -~~~~d~~~l~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 120 -LAAVQAAELPKPYVK-----WSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred -hcccCHHHhhccccc-----ceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 123577777777654 67788899998887877775 223589999999663
No 256
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=88.94 E-value=6.6 Score=37.14 Aligned_cols=155 Identities=17% Similarity=0.040 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHcCC---CE-EEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccC-c-eEEEEeCCcch
Q 007800 28 TLGRHLARRLVEIGA---KD-VFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVGG 101 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV---~~-vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~-~v~~~t~GpG~ 101 (589)
...+++.+.+.+.|+ +. ++.=-|.. . +.+ +.-.+....... ..+.-+|.|.+.+.. + .++++ |=|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~d~ii~~D~G~~-~--~~~--~~~~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i~--GDGs 80 (193)
T cd03375 9 SILKALAKALAELGIDPEKVVVVSGIGCS-S--RLP--YYFNTYGFHTLH-GRALAVATGVKLANPDLTVIVVS--GDGD 80 (193)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCChh-c--eeh--hhccccchhhhh-ccHHHHHHHHHHhCCCCeEEEEe--ccch
Confidence 456788888888876 33 33333332 2 111 111121111111 123447788777654 4 44444 4443
Q ss_pred --HHHHHHHHHhhhcCCcEEEEeCCCCccccCCccce---------ee-ecCCC-ChHHHHHhhhcce-eEE--EEeCCh
Q 007800 102 --LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL---------HH-TIGLP-DFTQELRCFQAIT-CSQ--AVVNNL 165 (589)
Q Consensus 102 --~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~---------~~-~~~~~-~~~~~~~~~~~~t-k~~--~~v~~~ 165 (589)
.-.+..+..|...++|+++|.-+......-+..+. +. ..+.. ...|...+.+.+- ++. .++.++
T Consensus 81 ~f~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~ 160 (193)
T cd03375 81 LAAIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDI 160 (193)
T ss_pred HhhccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCH
Confidence 23467888899999999998876544322111000 00 00000 0124455555542 332 357777
Q ss_pred hhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 166 GDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 166 ~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
+++...+++|+ ..+||+.|++..+=
T Consensus 161 ~el~~al~~al----~~~gp~vIev~~~C 185 (193)
T cd03375 161 KQLKEIIKKAI----QHKGFSFVEVLSPC 185 (193)
T ss_pred HHHHHHHHHHH----hcCCCEEEEEECCC
Confidence 76666666555 45899999997554
No 257
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=88.91 E-value=3.3 Score=37.71 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=62.2
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcc-cHHHHH-HHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQV-TAQEIS-TMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVN 520 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~-~~~el~-ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~ 520 (589)
..++.|.|+++.. .++++... ..|.. ....|. .+...++|+++++- ..+++.. .++..- ...+...+.+
T Consensus 50 ~~vg~A~GlA~~G-~~pi~~~~--~~f~~ra~dqi~~~~a~~~~pv~~~~~-~~g~~~~---~~G~tH--~~~~~~a~~~ 120 (156)
T cd07033 50 NMVGIAAGLALHG-LKPFVSTF--SFFLQRAYDQIRHDVALQNLPVKFVGT-HAGISVG---EDGPTH--QGIEDIALLR 120 (156)
T ss_pred HHHHHHHHHHHCC-CeEEEEEC--HHHHHHHHHHHHHHHhccCCCeEEEEE-CCcEecC---CCCccc--chHHHHHHhc
Confidence 4567777888753 44455444 45544 466676 66778999777554 4444320 011110 1223334444
Q ss_pred HccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007800 521 AIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560 (589)
Q Consensus 521 a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev 560 (589)
.+-. ++.+...+++|++..++++++ .++|++|-+
T Consensus 121 ~iPg----~~v~~Ps~~~~~~~ll~~a~~--~~~P~~irl 154 (156)
T cd07033 121 AIPN----MTVLRPADANETAAALEAALE--YDGPVYIRL 154 (156)
T ss_pred CCCC----CEEEecCCHHHHHHHHHHHHh--CCCCEEEEe
Confidence 4422 367777899999999999997 677988754
No 258
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=88.27 E-value=2.2 Score=43.25 Aligned_cols=100 Identities=19% Similarity=0.082 Sum_probs=63.9
Q ss_pred eEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeC--Ch
Q 007800 91 GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NL 165 (589)
Q Consensus 91 ~v~~~t~GpG~~n~---~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~--~~ 165 (589)
.++++..|=|.++. .-++..|...++|+|+|.-+.... .... .++... ..+...+.+.+--...++. ++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~-i~~~--~~~~~~---~~~~~~~a~a~G~~~~~Vdg~d~ 200 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA-ISTP--TSRQTA---GTSIADRAAAYGIPGIRVDGNDV 200 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee-ccCC--HHHHhC---CccHHHHHHhCCCCEEEECCCCH
Confidence 56666678777753 356777888999999998664321 1110 000111 1233455565555556665 45
Q ss_pred hhHHHHHHHHHHHhHhcCCcEEEEeCCCCCC
Q 007800 166 GDAHELIDTAISTALKESKPVYISISCNLPG 196 (589)
Q Consensus 166 ~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (589)
+++...+++|++.+....+|+.|++-.+-..
T Consensus 201 ~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~ 231 (293)
T cd02000 201 LAVYEAAKEAVERARAGGGPTLIEAVTYRLG 231 (293)
T ss_pred HHHHHHHHHHHHHHHccCCCEEEEEEEeccC
Confidence 6888889999998888789999999765543
No 259
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=88.27 E-value=25 Score=41.14 Aligned_cols=177 Identities=15% Similarity=0.029 Sum_probs=90.6
Q ss_pred CCeEEecCchhHHHH--hhhh--hhhccC-ceEEEEeCCc-chHHHHHHHHHhhh-cCCcEEEEeCCCCccccCCcccee
Q 007800 65 ELNLVGCCNELNAGY--AADG--YARSRG-VGACVVTFTV-GGLSVLNAIAGAYS-ENLPVICIVGGPNSNDYGTNRILH 137 (589)
Q Consensus 65 ~i~~v~~~hE~~A~~--~A~g--yar~tg-~~v~~~t~Gp-G~~n~~~~l~~A~~-~~~PllvI~g~~~~~~~~~~~~~~ 137 (589)
+=-+-.-..|+++.. +|.| |+...+ .-.+..|..+ |+.=+.--+-.+-. ..-++++++.......-+.+ ..|
T Consensus 573 gR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG-~TH 651 (896)
T PRK13012 573 GQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEG-LQH 651 (896)
T ss_pred CcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCC-CCC
Confidence 334556788999944 5544 444333 3333344442 11111122212222 33345555443322212222 122
Q ss_pred eecCCCChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhc--CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCC
Q 007800 138 HTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKE--SKPVYISISCNLPGIPHPTFARDPVPFFLAPK 214 (589)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~--~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~ 214 (589)
+......+++.+.. -.+++.+..++..+++.+++.+... .+|+||.+...-... +.. ++...
T Consensus 652 ------Q~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~--p~~-~~~~~------ 716 (896)
T PRK13012 652 ------QDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQ--PAL-PEGAE------ 716 (896)
T ss_pred ------cchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCC--CCC-Cccch------
Confidence 23344567776553 4567778888999999999875433 689999997543210 110 00000
Q ss_pred CCChhhHHHHHHHHHHHHHhcC--CCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 215 VSNQLGLEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 215 ~~~~~~~~~~i~~~~~~L~~a~--rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
..+.+-.-.|.+.+ .-+.|++.|.-...+.++...|++++|+.
T Consensus 717 --------~~i~kG~y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~ 761 (896)
T PRK13012 717 --------EGILKGMYRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVD 761 (896)
T ss_pred --------hccccCcEEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCC
Confidence 01111111222222 24788888887777888888898887764
No 260
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.05 E-value=12 Score=42.46 Aligned_cols=153 Identities=13% Similarity=0.095 Sum_probs=87.3
Q ss_pred ccHHHHHHHHHHHcCC--CEEEec----CCcch-HHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCc
Q 007800 27 GTLGRHLARRLVEIGA--KDVFSV----PGDFN-LTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV--~~vfg~----pG~~~-~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~Gp 99 (589)
.+..+++.+.|.+..- +.|+.+ +|+.- ..+.+.+ |+=-+=...-|++++.+|.|.|...-+.+|.+ ..+
T Consensus 356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~f---P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~-fs~ 431 (677)
T PLN02582 356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRF---PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSS 431 (677)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHc---CccccccCcCHHHHHHHHHHHHHCCCeEEEEe-cHH
Confidence 4667777777776543 345544 34332 2233333 22224456789999999999999543465554 443
Q ss_pred chHHHHHHH-HHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEE-EEeCChhhHHHHHHHHHH
Q 007800 100 GGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAIS 177 (589)
Q Consensus 100 G~~n~~~~l-~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~ 177 (589)
=+.-++.-+ .++...+.||+++....... ...+ .-|| ......+++.+.-.. ..+.++.++..+++.|+.
T Consensus 432 Fl~RA~DQI~~dval~~lpVv~v~~~aG~v-g~dG-~TH~------~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~ 503 (677)
T PLN02582 432 FLQRGYDQVVHDVDLQKLPVRFAMDRAGLV-GADG-PTHC------GAFDVTYMACLPNMVVMAPSDEAELFHMVATAAA 503 (677)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEECCCcc-cCCC-Cccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 333455443 45567899998885432221 1112 1222 223466677665433 345666777666665553
Q ss_pred HhHhcCCcEEEEeCCCC
Q 007800 178 TALKESKPVYISISCNL 194 (589)
Q Consensus 178 ~a~~~~gPV~i~iP~dv 194 (589)
..++||||..|...
T Consensus 504 ---~~~gPv~IR~pr~~ 517 (677)
T PLN02582 504 ---IDDRPSCFRYPRGN 517 (677)
T ss_pred ---CCCCCEEEEEecCC
Confidence 22599999999764
No 261
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=88.01 E-value=35 Score=35.19 Aligned_cols=239 Identities=17% Similarity=0.107 Sum_probs=116.6
Q ss_pred ccHHHHHHHHHHHcC--CCEEEecCCcc-----hHHHHHhhhc-C-CCCeEE-ecCchhHHHHhhhhhhhccCceEEEEe
Q 007800 27 GTLGRHLARRLVEIG--AKDVFSVPGDF-----NLTLLDHLIA-E-PELNLV-GCCNELNAGYAADGYARSRGVGACVVT 96 (589)
Q Consensus 27 ~~~a~~i~~~L~~~G--V~~vfg~pG~~-----~~~l~~al~~-~-~~i~~v-~~~hE~~A~~~A~gyar~tg~~v~~~t 96 (589)
++..+++.+.|.+.. =+.++.+..+- ...+++.+.+ . |+ +++ ...-|++++.+|.|.|....+.+|...
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~-R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPK-RVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCC-ceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 455566666655552 23444443321 1111333332 2 22 333 457899999999999996445555432
Q ss_pred CCcchHHHHHHHHH--hhh-------cCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEE-EeCChh
Q 007800 97 FTVGGLSVLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLG 166 (589)
Q Consensus 97 ~GpG~~n~~~~l~~--A~~-------~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~-~v~~~~ 166 (589)
+.-=+..++.-|.+ |+. -++||++...+-+... .+. -| + +.. ..+++.+--... .+.++.
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~--~G~-tH-~----~~~--ea~~r~iP~l~V~~P~d~~ 152 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAAR--VAA-QH-S----QCY--AAWYSHIPGLKVVAPYFAA 152 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCC--CCc-cc-c----cCH--HHHHhcCCCCEEEeeCCHH
Confidence 21112233332221 333 2689888765422221 111 12 1 122 277777654333 456777
Q ss_pred hHHHHHHHHHHHhHhcCCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCccc
Q 007800 167 DAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNI 246 (589)
Q Consensus 167 ~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~ 246 (589)
++..+++.|++ .++||||..|........+... +..+.... + +..++ ...-+.+++.|.
T Consensus 153 e~~~~l~~a~~----~~~Pv~i~~~~~~~~~~~~~~~-~~~~~~~G--------------k-~~vl~-~G~di~iva~G~ 211 (327)
T PRK09212 153 DCKGLLKTAIR----DPNPVIFLENEILYGHSHEVPE-EEESIPIG--------------K-AAILR-EGSDVTIVTFSI 211 (327)
T ss_pred HHHHHHHHHHh----CCCcEEEEEchhhcCCCCCCCC-CCccccCC--------------e-eEEEE-eCCCEEEEEccH
Confidence 77777776664 3699999766543221001100 00000000 0 01122 234567777776
Q ss_pred chhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCC
Q 007800 247 RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI 312 (589)
Q Consensus 247 ~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~ 312 (589)
-...+.++...|.+ -|+.+-. .. +..=.|+ -.....+.+++++.|+++...
T Consensus 212 ~~~~a~eAa~~L~~-~Gi~v~v-i~----~~~l~Pl---------d~~~i~~~~~~~~~vv~vEe~ 262 (327)
T PRK09212 212 QVKLALEAAELLEK-EGISVEV-ID----LRTLRPL---------DTETIIESVKKTNRLVVVEEG 262 (327)
T ss_pred HHHHHHHHHHHHHh-cCCcEEE-EE----EecCCCC---------CHHHHHHHHHhCCeEEEEcCC
Confidence 65556666666643 3543321 00 1111222 233466778889999988643
No 262
>PRK05899 transketolase; Reviewed
Probab=87.96 E-value=4.8 Score=45.55 Aligned_cols=116 Identities=20% Similarity=0.155 Sum_probs=73.1
Q ss_pred eEEe-cCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCC
Q 007800 67 NLVG-CCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (589)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~ 144 (589)
+++. ..-|++++.+|.|+|...+. .++. |..+=+.-++..+-.+...+.|++++....... .+.+..-| +
T Consensus 368 R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~-t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~-~g~~G~tH------q 439 (624)
T PRK05899 368 RYIHYGVREFAMAAIANGLALHGGFIPFGG-TFLVFSDYARNAIRLAALMKLPVIYVFTHDSIG-VGEDGPTH------Q 439 (624)
T ss_pred CeeeeChhHHHHHHHHHHHHHcCCCeEEEE-EcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-cCCCCCCc------c
Confidence 4444 78999999999999987535 4444 444444456666666677889999997543332 12111122 2
Q ss_pred hHHHHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHhc-CCcEEEEeCCCC
Q 007800 145 FTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKE-SKPVYISISCNL 194 (589)
Q Consensus 145 ~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~dv 194 (589)
......+++.+... ...+.++.++..+++.|+ .. ++||||.+|...
T Consensus 440 ~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 487 (624)
T PRK05899 440 PVEQLASLRAIPNLTVIRPADANETAAAWKYAL----ERKDGPSALVLTRQN 487 (624)
T ss_pred cHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHH----HcCCCCEEEEEeCCC
Confidence 33446677776543 345567777766666555 44 699999998643
No 263
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=87.74 E-value=2.3 Score=47.14 Aligned_cols=108 Identities=11% Similarity=-0.055 Sum_probs=68.5
Q ss_pred hhhhhhhccCc-eEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeee--cCCCChHHHHHhhhcc
Q 007800 80 AADGYARSRGV-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT--IGLPDFTQELRCFQAI 155 (589)
Q Consensus 80 ~A~gyar~tg~-~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 155 (589)
+|.|.+.+.++ .|++ .|=| +.-.+.-|..|...++|+++|.-.......-+. .|+. .......|...+.+.+
T Consensus 411 aaiGa~lA~~~r~v~i--~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~--~~~~~~~~~~~~~d~~~lA~a~ 486 (535)
T TIGR03394 411 AGIGAQCTSGKRILTL--VGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRV--FQPESAFNDLDDWRFADMAAGM 486 (535)
T ss_pred HHHHHHhCCCCCeEEE--EeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeeh--hccCCCcccCCCCCHHHHHHHc
Confidence 55665656555 5554 3444 444568999999999999988876544321110 1110 0011123567788888
Q ss_pred eeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 156 tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
-....++++++++...+++|++ ...+|+.|++..|-
T Consensus 487 G~~~~~v~~~~eL~~al~~a~~---~~~~p~lIev~i~~ 522 (535)
T TIGR03394 487 GGDGVRVRTRAELAAALDKAFA---TRGRFQLIEAMLPR 522 (535)
T ss_pred CCCceEeCCHHHHHHHHHHHHh---cCCCeEEEEEECCc
Confidence 8888999998888777777764 12458899998764
No 264
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=87.66 E-value=8.7 Score=35.55 Aligned_cols=137 Identities=16% Similarity=0.008 Sum_probs=71.8
Q ss_pred CcchHHHHHhhhcCCCCeEEecCchhHH---HHhhhhhhhccC-ceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCC
Q 007800 50 GDFNLTLLDHLIAEPELNLVGCCNELNA---GYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGP 125 (589)
Q Consensus 50 G~~~~~l~~al~~~~~i~~v~~~hE~~A---~~~A~gyar~tg-~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~ 125 (589)
|.+.......+.-...-+++.... .+- .-+|.|.+.+.. +-|++++.--+..-.+..+..|...+.|+++|.-+.
T Consensus 25 g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~~el~ta~~~~~p~~~iV~nN 103 (178)
T cd02002 25 VTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTIQALWTAARYGLPVTVVILNN 103 (178)
T ss_pred CcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCchhhccHHHHHHHHHhCCCeEEEEEcC
Confidence 444444444343212345665555 333 237778777653 433333322233334578888888899999998765
Q ss_pred CccccCCcccee---------eecC-C--CChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 126 NSNDYGTNRILH---------HTIG-L--PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 126 ~~~~~~~~~~~~---------~~~~-~--~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
......+..+.+ .... . ....|..++++.+--...++.+++++.+.+++| ...++|+.|++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a----~~~~~p~vi~v~ 177 (178)
T cd02002 104 RGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDEALREA----LAEGGPALIEVV 177 (178)
T ss_pred ccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHHHHHHH----HhCCCCEEEEEE
Confidence 432110000000 0000 0 001245667777655567787766655555555 445799999874
No 265
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=87.63 E-value=2.1 Score=43.64 Aligned_cols=104 Identities=26% Similarity=0.236 Sum_probs=62.6
Q ss_pred hhhhc---cCc-eEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhc-
Q 007800 83 GYARS---RGV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA- 154 (589)
Q Consensus 83 gyar~---tg~-~v~~~t~GpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (589)
|.|++ .+. .|+++..|=|+++ ..-++--|...+.|+|+|+-+..-.. .+. .++....... .+..+.
T Consensus 112 G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~ai-st~--~~~~~~~~~~---~~~a~~~ 185 (300)
T PF00676_consen 112 GVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAI-STP--TEEQTASPDI---ADRAKGY 185 (300)
T ss_dssp HHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEET-TEE--HHHHCSSSTS---GGGGGGT
T ss_pred chhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCccc-ccC--ccccccccch---hhhhhcc
Confidence 55543 455 8888888888765 34455557888999999986532211 110 0000000011 122222
Q ss_pred -ceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCC
Q 007800 155 -ITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISC 192 (589)
Q Consensus 155 -~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (589)
+.-....=.++..+.+.+.+|++.+..++||+.|++-.
T Consensus 186 gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~t 224 (300)
T PF00676_consen 186 GIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVT 224 (300)
T ss_dssp TSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE
T ss_pred CCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 33344455688899999999999999999999999853
No 266
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=87.57 E-value=13 Score=40.35 Aligned_cols=147 Identities=16% Similarity=0.106 Sum_probs=82.9
Q ss_pred cccHHHHHHHHHHHcCC--CEEEecCC-----cc----hHHHHHhhhcCCCCeEE-ecCchhHHHHhhhhhhhccCceEE
Q 007800 26 VGTLGRHLARRLVEIGA--KDVFSVPG-----DF----NLTLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRGVGAC 93 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV--~~vfg~pG-----~~----~~~l~~al~~~~~i~~v-~~~hE~~A~~~A~gyar~tg~~v~ 93 (589)
.++..+++.+.|.+..- +.||.+-. .. ...|.+.+.. =+|+ ...-|++++.+|.|.|....+.+|
T Consensus 141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp---~R~id~gIaEq~~vg~AaGlA~~G~rPiv 217 (464)
T PRK11892 141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGA---RRVIDTPITEHGFAGIGVGAAFAGLKPIV 217 (464)
T ss_pred chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCc---cceeecCccHHHHHHHHHHHHhCCCEEEE
Confidence 35677777777766643 23444432 11 2345555521 1333 457899999999999996445555
Q ss_pred EEeCCcchHHHHHHHHH-hh--------hcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEE-EeC
Q 007800 94 VVTFTVGGLSVLNAIAG-AY--------SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVN 163 (589)
Q Consensus 94 ~~t~GpG~~n~~~~l~~-A~--------~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~-~v~ 163 (589)
.....-=+..++.-|.+ +. ..+.||++++.+-+... .+ .||++ +...+++.+--... ...
T Consensus 218 ~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G--~hhs~------~d~a~~~~iPgl~V~~P~ 287 (464)
T PRK11892 218 EFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VA--AQHSQ------DYAAWYSHIPGLKVVAPY 287 (464)
T ss_pred EEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CC--Ccccc------CHHHHHhhCCCCEEEEeC
Confidence 32211112334444432 23 56799999865543321 11 24432 23577777654332 456
Q ss_pred ChhhHHHHHHHHHHHhHhcCCcEEEE
Q 007800 164 NLGDAHELIDTAISTALKESKPVYIS 189 (589)
Q Consensus 164 ~~~~~~~~l~~A~~~a~~~~gPV~i~ 189 (589)
++.++..+++.|+ ..++|||+.
T Consensus 288 d~~d~~~ll~~ai----~~~~Pv~il 309 (464)
T PRK11892 288 SAADAKGLLKAAI----RDPNPVIFL 309 (464)
T ss_pred CHHHHHHHHHHHh----hCCCcEEEE
Confidence 7777777766665 347999984
No 267
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=87.55 E-value=22 Score=32.90 Aligned_cols=113 Identities=15% Similarity=0.064 Sum_probs=63.8
Q ss_pred HHHhhhhhhhcc-Cc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCcc---ceeeecCC-CChHHHHH
Q 007800 77 AGYAADGYARSR-GV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILHHTIGL-PDFTQELR 150 (589)
Q Consensus 77 A~~~A~gyar~t-g~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~---~~~~~~~~-~~~~~~~~ 150 (589)
+.-+|.|.+.+. ++ .+|++-=|.-..+ +..+..+...++|+++|.-+.......+.. ......+. ....|..+
T Consensus 56 ~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 134 (178)
T cd02014 56 GLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAK 134 (178)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHH
Confidence 444667766554 34 5555443333333 677888999999998888765432110000 00000010 01124566
Q ss_pred hhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 151 ~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
+.+.+--...++.+++++.+ +++.+....+|+.|++..|-
T Consensus 135 la~a~G~~~~~v~~~~el~~----~l~~a~~~~~p~liev~~~~ 174 (178)
T cd02014 135 IAEAMGIKGIRVEDPDELEA----ALDEALAADGPVVIDVVTDP 174 (178)
T ss_pred HHHHCCCeEEEeCCHHHHHH----HHHHHHhCCCCEEEEEEeCC
Confidence 77766555678888776655 44445555799999998653
No 268
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=87.49 E-value=7.6 Score=36.12 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=61.5
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcc-----cHHHHH-HHHHhCCCeEEEEEeCC-chhhhhhhcCCCCCCCCCCCh
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQV-----TAQEIS-TMIRCGQRSIIFLINNG-GYTIEVEIHDGPYNVIKNWDY 515 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~-----~~~el~-ta~~~~l~v~ivv~nN~-~~~~~~~~~~~~~~~~~~~d~ 515 (589)
..++.|.|++++.+ .++++..-=+.|+. ....+. .....+.|+. |+..-+ +++.. +... ...+.
T Consensus 59 ~~vg~a~GlA~~G~-~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~----G~tH---~s~~d 129 (178)
T PF02779_consen 59 NMVGMAAGLALAGG-LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGD----GGTH---HSIED 129 (178)
T ss_dssp HHHHHHHHHHHHSS-SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTT----GTTT---SSSSH
T ss_pred hccceeeeeeeccc-ccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccc----cccc---ccccc
Confidence 35788889888742 13333333344554 233333 3556799988 444433 23321 1111 34456
Q ss_pred HHHHHHc-cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEE
Q 007800 516 TGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVF 561 (589)
Q Consensus 516 ~~la~a~-G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~ 561 (589)
..+.+++ |+ +.+...|+.|++.+++.+++.+.++|++|-..
T Consensus 130 ~~~~~~iPg~-----~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 130 EAILRSIPGM-----KVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHHHHTSTTE-----EEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccccccc-----ccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 6666666 55 77888899999999999995225689988654
No 269
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=87.28 E-value=4.1 Score=45.64 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=86.8
Q ss_pred ccHHHHHHHHHHHcC--CCEEEec-CC---c-chHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCC
Q 007800 27 GTLGRHLARRLVEIG--AKDVFSV-PG---D-FNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFT 98 (589)
Q Consensus 27 ~~~a~~i~~~L~~~G--V~~vfg~-pG---~-~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~G 98 (589)
.+..+++.+.|.+.. -..++++ ++ + ....+.+.+ |+=-+=...-|++.+.+|.|.|.. |. .++.+ ..
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~---p~R~i~~GIaE~~mvg~A~GlA~~-G~~p~~~~-f~ 353 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRF---PDRYFDVGIAEQHAVTFAAGLATE-GLKPVVAI-YS 353 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHh---hhhccCCChHHHHHHHHHHHHHHC-CCeeEEEe-eH
Confidence 455677766666552 2344443 22 2 222222222 222234567899999999999994 55 55543 44
Q ss_pred cchHHHHHHHHH-hhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHHHH
Q 007800 99 VGGLSVLNAIAG-AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAI 176 (589)
Q Consensus 99 pG~~n~~~~l~~-A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~ 176 (589)
+=+.-+...+.. +...+.|++++....... ...+ .-| +...+..+++.+--. ...+.++.++..+++.|+
T Consensus 354 ~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~-g~dG-~tH------~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~ 425 (580)
T PRK05444 354 TFLQRAYDQVIHDVALQNLPVTFAIDRAGLV-GADG-PTH------QGAFDLSYLRCIPNMVIMAPSDENELRQMLYTAL 425 (580)
T ss_pred HHHHHHHHHHHHHhhhcCCCEEEEEeCCCcC-CCCC-ccc------cccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 323334444443 566899999997543322 1112 122 233456888877654 345667776665555554
Q ss_pred HHhHhcCCcEEEEeCCCC
Q 007800 177 STALKESKPVYISISCNL 194 (589)
Q Consensus 177 ~~a~~~~gPV~i~iP~dv 194 (589)
+. .++||||.++...
T Consensus 426 ~~---~~~P~~ir~~r~~ 440 (580)
T PRK05444 426 AY---DDGPIAIRYPRGN 440 (580)
T ss_pred hC---CCCcEEEEecCCC
Confidence 31 2799999999766
No 270
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=87.14 E-value=18 Score=36.34 Aligned_cols=152 Identities=13% Similarity=0.002 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCC---CEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccC-c-eEEEEeCCcchHH-
Q 007800 30 GRHLARRLVEIGA---KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGLS- 103 (589)
Q Consensus 30 a~~i~~~L~~~GV---~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~-~v~~~t~GpG~~n- 103 (589)
-+.+++.|.+.++ +.++.. |......+-... ....+.+.| ..|.-+|.|.+.+.. + .+++ +|=|..-
T Consensus 28 ~~~v~~al~e~~~~~~d~ivvs-diGc~~~~~~~~---~~~~~~~~~-G~alPaAiGaklA~Pdr~VV~i--~GDG~f~~ 100 (277)
T PRK09628 28 LKSIIRAIDKLGWNMDDVCVVS-GIGCSGRFSSYV---NCNTVHTTH-GRAVAYATGIKLANPDKHVIVV--SGDGDGLA 100 (277)
T ss_pred HHHHHHHHHHhcCCCCCEEEEe-CcCHHHHhhccC---CCCceeecc-ccHHHHHHHHHHHCCCCeEEEE--ECchHHHH
Confidence 4668889988863 344443 333333322222 234455555 367778889787764 4 4444 3555432
Q ss_pred -HHHHHHHhhhcCCcEEEEeCCCCccccCCccc--------eee--ecCC--CChHHHHHhhhcce-eE--EEEeCChhh
Q 007800 104 -VLNAIAGAYSENLPVICIVGGPNSNDYGTNRI--------LHH--TIGL--PDFTQELRCFQAIT-CS--QAVVNNLGD 167 (589)
Q Consensus 104 -~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~--------~~~--~~~~--~~~~~~~~~~~~~t-k~--~~~v~~~~~ 167 (589)
...-+..|...++|+++|.-+......-.++. ... ..+. .+ .|...+.+.+- ++ ..++.++++
T Consensus 101 ~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~-~D~~~lA~a~G~~~va~~~v~~~~e 179 (277)
T PRK09628 101 IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPT-FDACKLATAAGASFVARESVIDPQK 179 (277)
T ss_pred hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCC-CCHHHHHHHCCCceEEEEccCCHHH
Confidence 23455558899999999886644332111000 000 0110 11 23355555543 23 257888888
Q ss_pred HHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 168 AHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 168 ~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
+...|++|+ ..+||++|++..+
T Consensus 180 l~~al~~Al----~~~Gp~lIeV~~~ 201 (277)
T PRK09628 180 LEKLLVKGF----SHKGFSFFDVFSN 201 (277)
T ss_pred HHHHHHHHH----hCCCCEEEEEcCC
Confidence 766666665 4579999998744
No 271
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=86.98 E-value=17 Score=41.15 Aligned_cols=152 Identities=12% Similarity=0.163 Sum_probs=86.9
Q ss_pred ccHHHHHHHHHHHcCC--CEEEec----CC-cchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCC
Q 007800 27 GTLGRHLARRLVEIGA--KDVFSV----PG-DFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFT 98 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV--~~vfg~----pG-~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~G 98 (589)
.+..+++.+.|.+..- +.|+.+ ++ +....|.+.+ |+=-+=...-|++++.+|.|.|.. |. .+|.+ ..
T Consensus 310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~f---P~R~~d~GIaEq~~vg~AaGlA~~-G~~Pvv~~-~a 384 (617)
T TIGR00204 310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKF---PDRYFDVAIAEQHAVTFAAGMAIE-GYKPFVAI-YS 384 (617)
T ss_pred ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHC---ccccccCCccHHHHHHHHHHHHHC-CCEEEEEe-cH
Confidence 4556667666666532 345543 32 2223333333 322244567899999999999984 65 55554 44
Q ss_pred cchHHHHHHH-HHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEE-EEeCChhhHHHHHHHHH
Q 007800 99 VGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAI 176 (589)
Q Consensus 99 pG~~n~~~~l-~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~ 176 (589)
+=+.-++.-| .++...+.||+++....... +.+..-|+ ......+++.+.-.. ..+.++.++..+++.|+
T Consensus 385 ~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~--g~dG~tH~------~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~ 456 (617)
T TIGR00204 385 TFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV--GADGETHQ------GAFDISYLRCIPNMVIMAPSDENELRQMLYTGY 456 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCcC--CCCCcccc------cchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHH
Confidence 3333344444 23556789999886543322 22111232 223367777766543 45567777766666665
Q ss_pred HHhHhcCCcEEEEeCCCC
Q 007800 177 STALKESKPVYISISCNL 194 (589)
Q Consensus 177 ~~a~~~~gPV~i~iP~dv 194 (589)
+ ..++||||.+|...
T Consensus 457 ~---~~~~Pv~ir~~r~~ 471 (617)
T TIGR00204 457 H---YDDGPIAVRYPRGN 471 (617)
T ss_pred h---CCCCCEEEEEccCC
Confidence 3 12599999999764
No 272
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=86.72 E-value=0.55 Score=49.45 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC---CceEEccCC-ccCCCCCCCCceee----ecCCCCCHH
Q 007800 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPSG-KGLVPEHHPHFIGT----YWGAVSSSF 295 (589)
Q Consensus 224 ~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~---~Pv~tt~~~-~g~~~~~~pl~~G~----~~g~~~~~~ 295 (589)
+.++++.+|..|++.+|+-|+|..-+.++.++++|+|.+. +-|=--.+- .|-.|.+-.-.+-- |+-..--++
T Consensus 295 ~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVAGRMPGHMNVLLAEA~VPYd~v~eMde 374 (462)
T PRK09444 295 TAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDE 374 (462)
T ss_pred CHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceeEEeecCCCHHHHHhHHh
Confidence 4568889999999999999999999888888888888764 333211110 01222211100000 000011134
Q ss_pred HHHHhhhcCEEEEeCCC
Q 007800 296 CGEIVESADAYVFVGPI 312 (589)
Q Consensus 296 ~~~~l~~aD~vl~lG~~ 312 (589)
.|+-+.+.|++|++|..
T Consensus 375 IN~~F~~tDvalVIGAN 391 (462)
T PRK09444 375 INDDFADTDTVLVIGAN 391 (462)
T ss_pred hccccccCCEEEEecCc
Confidence 45556799999999975
No 273
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=86.65 E-value=3.7 Score=42.10 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=67.0
Q ss_pred hhhhhhhcc---Cc-eEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhh
Q 007800 80 AADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152 (589)
Q Consensus 80 ~A~gyar~t---g~-~v~~~t~GpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (589)
.|.|.+.+. +. .++++..|=|.++ ..-++.-|...+.|+|+|.-+..-. ..+. .++... ..+..++.
T Consensus 118 ~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg-~s~~--~~~~~~---~~~~a~~A 191 (315)
T TIGR03182 118 LATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA-MGTS--VERSSS---VTDLYKRG 191 (315)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcc-ccCC--HHHHhC---CcCHHHHH
Confidence 345555443 33 5666677877765 2234556777899999998764211 1110 000111 11234555
Q ss_pred hcceeEEEEeCC--hhhHHHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 007800 153 QAITCSQAVVNN--LGDAHELIDTAISTALKESKPVYISISCNLP 195 (589)
Q Consensus 153 ~~~tk~~~~v~~--~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (589)
+.+--...++.. +.++...+.+|++.+...+||+.|++-..-.
T Consensus 192 ~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 236 (315)
T TIGR03182 192 ESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRF 236 (315)
T ss_pred HhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcC
Confidence 555555566654 6678888999999998888999999976543
No 274
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=86.13 E-value=28 Score=36.37 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=83.7
Q ss_pred cccccCCCcccHHHHHHHHHHHcCC--CEEEecCCcc-----hHHHHHhhhc-CCCCeEE-ecCchhHHHHhhhhhhhcc
Q 007800 18 APVRGGASVGTLGRHLARRLVEIGA--KDVFSVPGDF-----NLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSR 88 (589)
Q Consensus 18 ~~~~~~~~~~~~a~~i~~~L~~~GV--~~vfg~pG~~-----~~~l~~al~~-~~~i~~v-~~~hE~~A~~~A~gyar~t 88 (589)
.+.++.+ .++..+++.+.|.+..- +.++.+..+- .....+.+.+ ...-+|+ ...-|++++.+|.|.|...
T Consensus 19 ~~~~~~~-~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G 97 (356)
T PLN02683 19 GYASAAK-EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAG 97 (356)
T ss_pred ccCcccc-ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCC
Confidence 3444443 36677777777766643 4455554421 1111222222 1012344 4578999999999999975
Q ss_pred CceEEEEeCCcchHHHHHHHHH-hhhcC--------CcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEE
Q 007800 89 GVGACVVTFTVGGLSVLNAIAG-AYSEN--------LPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ 159 (589)
Q Consensus 89 g~~v~~~t~GpG~~n~~~~l~~-A~~~~--------~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~ 159 (589)
.+.++.....-=+..++.-|.+ +...+ .||++++.+ ... .+.+ -+|. +. + ..+++.+--..
T Consensus 98 ~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~-~g~G--~tH~----~~-~-~a~lr~iPnl~ 167 (356)
T PLN02683 98 LKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAA-AGVG--AQHS----QC-F-AAWYSSVPGLK 167 (356)
T ss_pred CEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCC-CCCC--Cccc----cC-H-HHHHhcCCCCE
Confidence 5555432222112334444432 23233 899988644 221 1222 1121 12 2 57777765433
Q ss_pred -EEeCChhhHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 160 -AVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 160 -~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
..+.++.++..+++.|+ ..++||||..+
T Consensus 168 V~~Pad~~e~~~~l~~a~----~~~gPv~ir~~ 196 (356)
T PLN02683 168 VLAPYSSEDARGLLKAAI----RDPDPVVFLEN 196 (356)
T ss_pred EEEeCCHHHHHHHHHHHH----hCCCcEEEEEe
Confidence 34566777766665554 44699999864
No 275
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=85.92 E-value=5.5 Score=39.03 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=50.5
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccc-----eee-----ecC-CCChHHHHHhhhcceeEEEE---eCChhhHH
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRI-----LHH-----TIG-LPDFTQELRCFQAITCSQAV---VNNLGDAH 169 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~-----~~~-----~~~-~~~~~~~~~~~~~~tk~~~~---v~~~~~~~ 169 (589)
.+..+.++...++|+++|.-+......-.++. ..+ ..+ .....|...+.+.+--...+ +.+++++.
T Consensus 103 g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~ 182 (237)
T cd02018 103 GFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFL 182 (237)
T ss_pred cHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHH
Confidence 46677777889999999987755432111110 000 000 00113456666666544443 66666555
Q ss_pred HHHHHHHHHhHh-cCCcEEEEeCCCCC
Q 007800 170 ELIDTAISTALK-ESKPVYISISCNLP 195 (589)
Q Consensus 170 ~~l~~A~~~a~~-~~gPV~i~iP~dv~ 195 (589)
..|+ .|.. .+||++|++..+..
T Consensus 183 ~al~----~al~~~~GP~lI~v~i~c~ 205 (237)
T cd02018 183 KVVK----EAISRTDGPTFIHAYTPCI 205 (237)
T ss_pred HHHH----HHHhcCCCCEEEEEeCCCC
Confidence 5554 4444 58999999998764
No 276
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=85.31 E-value=27 Score=34.78 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=57.8
Q ss_pred cEEEEEcchhhccc--HH-H-HHHHHHhCCCeEEEEEeCC--chhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEE
Q 007800 459 RVIACIGDGSFQVT--AQ-E-ISTMIRCGQRSIIFLINNG--GYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA 532 (589)
Q Consensus 459 ~vv~i~GDGsf~~~--~~-e-l~ta~~~~l~v~ivv~nN~--~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~ 532 (589)
++++++-||...++ .. . ...+.+.++-+.+|+++|. .-++... ..-.|..-....+....+.|+++ .++
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~-~~~~~~~~~~~~l~~Yl~~fpfp----Yy~ 240 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDI-KVVSFKNDKSGVITPYLDEFPFP----YYV 240 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccc-cccccCCCCccHHHHHHhcCCCC----eEE
Confidence 89999999995543 22 2 4455668999999999997 2333111 00112111112778899999995 667
Q ss_pred EeCCHHHHHHHHHHhh
Q 007800 533 KVRSEDELTEAMKTAT 548 (589)
Q Consensus 533 ~v~~~~~l~~al~~a~ 548 (589)
.|.+.++|.+.|..++
T Consensus 241 ~~~~~~~lp~~l~~~l 256 (266)
T cd01460 241 IVRDLNQLPSVLSDAL 256 (266)
T ss_pred EecChhHhHHHHHHHH
Confidence 7899999999888776
No 277
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=85.12 E-value=6.5 Score=36.65 Aligned_cols=104 Identities=16% Similarity=0.074 Sum_probs=58.6
Q ss_pred HhhhhhhhccCc-eEEEEeCCcchHH-HHHHHHHhhhcCC-cEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcc
Q 007800 79 YAADGYARSRGV-GACVVTFTVGGLS-VLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI 155 (589)
Q Consensus 79 ~~A~gyar~tg~-~v~~~t~GpG~~n-~~~~l~~A~~~~~-PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (589)
-+|.|.+.+..+ .+|+ .|=|... .+..+..+...+. |+++|.-+......... .+ ... ....|...+.+.+
T Consensus 49 p~AiGaala~~~~vv~i--~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~--~~-~~~-~~~~d~~~lA~a~ 122 (179)
T cd03372 49 SIGLGLALAQPRKVIVI--DGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGN--QP-THA-GKKTDLEAVAKAC 122 (179)
T ss_pred HHHHHHHhcCCCcEEEE--ECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCC--CC-CCC-CCCCCHHHHHHHc
Confidence 366676655444 4444 3555553 3678888877775 67777654333211111 00 010 1112456667766
Q ss_pred eeEEEEeC-ChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 156 TCSQAVVN-NLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 156 tk~~~~v~-~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
--...++. +++++.+.+++|+ +||..|++..+-
T Consensus 123 G~~~~~v~~~~~el~~al~~a~------~gp~lIev~~~~ 156 (179)
T cd03372 123 GLDNVATVASEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179)
T ss_pred CCCeEEecCCHHHHHHHHHHhc------CCCEEEEEEEcC
Confidence 55556666 6666655555554 699999999764
No 278
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=84.48 E-value=6.6 Score=36.71 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=60.1
Q ss_pred HHhhhhhhhccCc-eEEEEeCCcchHH-HHHHHHHhhhcC-CcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhc
Q 007800 78 GYAADGYARSRGV-GACVVTFTVGGLS-VLNAIAGAYSEN-LPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA 154 (589)
Q Consensus 78 ~~~A~gyar~tg~-~v~~~t~GpG~~n-~~~~l~~A~~~~-~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (589)
.-+|.|.+.+..+ .+|++ |=|... .+..+..|...+ .|+++|.-+......-..+ .... ....|...+.+.
T Consensus 48 lpaAiGa~la~~~~Vv~i~--GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q---~~~~-~~~~d~~~lA~a 121 (181)
T TIGR03846 48 SSIGLGLALATDRTVIVID--GDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQ---PTPA-SRRTDLELVAKA 121 (181)
T ss_pred HHHHHHHHHcCCCcEEEEE--cchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCc---CCCC-CCCCCHHHHHHH
Confidence 3466776665544 45444 434332 456777777777 5998888654432111100 0000 011245667776
Q ss_pred ceeEEEE-eCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 155 ITCSQAV-VNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 155 ~tk~~~~-v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
+--...+ +.+++++...+ + +...+||+.|++..|-
T Consensus 122 ~G~~~~~~v~~~~~l~~al----~-a~~~~~p~li~v~~~~ 157 (181)
T TIGR03846 122 AGIRNVEKVADEEELRDAL----K-ALAMKGPTFIHVKVKP 157 (181)
T ss_pred CCCCeEEEeCCHHHHHHHH----H-HHcCCCCEEEEEEeCC
Confidence 6555555 78877665555 3 4445799999998764
No 279
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=84.21 E-value=5.8 Score=44.59 Aligned_cols=115 Identities=8% Similarity=-0.067 Sum_probs=67.4
Q ss_pred hhhhhhhccC-ceEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCccccCCccceee----ecC-CCChHHHHHhh
Q 007800 80 AADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH----TIG-LPDFTQELRCF 152 (589)
Q Consensus 80 ~A~gyar~tg-~~v~~~t~GpG~~n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~ 152 (589)
+|.|.+.+.. +-|+..+.--++.. .+..|..|...++|+++|.-+......-.++.... ..+ .....|...+.
T Consensus 411 ~AiGa~~a~p~~~Vv~i~GDG~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia 490 (595)
T TIGR03336 411 VASGLSKAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELC 490 (595)
T ss_pred HHhhhhhcCCCCCEEEEeccchhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHH
Confidence 5666555543 33333333334443 38999999999999998887654432211100000 000 00113556777
Q ss_pred hcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 007800 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (589)
Q Consensus 153 ~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (589)
+.+--...++.+++++. .+..|++.+...+||..|.+..+-.
T Consensus 491 ~a~G~~~~~v~~~~~l~-~l~~al~~a~~~~gp~li~v~~~C~ 532 (595)
T TIGR03336 491 RASGVEFVEVVDPLNVK-ETIEVFKAALAAEGVSVIIAKQPCV 532 (595)
T ss_pred HHcCCCEEEEeCcCCHH-HHHHHHHHHHhcCCCEEEEEcccCc
Confidence 77777777787776653 2455666666668999999986653
No 280
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=83.56 E-value=15 Score=36.82 Aligned_cols=153 Identities=17% Similarity=0.119 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCC--EEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccC-c-eEEEEeCCcchH--
Q 007800 29 LGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGL-- 102 (589)
Q Consensus 29 ~a~~i~~~L~~~GV~--~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~-~v~~~t~GpG~~-- 102 (589)
.-.+|.++|.+.|+. .++-+.|......+..+.+ .....+.|.. +.-+|.|...+.. + .++++ |=|.+
T Consensus 19 i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~---~~~~~~~mG~-alp~AiGaklA~pd~~VVai~--GDG~~~~ 92 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYIN---VNGFHTLHGR-AIPAATAVKATNPELTVIAEG--GDGDMYA 92 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHcc---CCCCCccccc-HHHHHHHHHHHCCCCcEEEEE--CchHHhh
Confidence 446778888888764 3344444333333322222 2233333443 3445666555543 4 44443 44433
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCccccCCccce------ee----ecCCC-ChHHHHHhhhccee-EEEE--eCChhhH
Q 007800 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL------HH----TIGLP-DFTQELRCFQAITC-SQAV--VNNLGDA 168 (589)
Q Consensus 103 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~------~~----~~~~~-~~~~~~~~~~~~tk-~~~~--v~~~~~~ 168 (589)
+.++.+..|...++||++|.-+......-.++.. .. ..+.. .-.|...+.+.+-- +..+ +.+++++
T Consensus 93 iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l 172 (280)
T PRK11869 93 EGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEET 172 (280)
T ss_pred CcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHH
Confidence 3389999999999999999876443211000000 00 01100 11244555555432 2222 5566666
Q ss_pred HHHHHHHHHHhHhcCCcEEEEeC
Q 007800 169 HELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 169 ~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
.+.|.+|+ +.+||++|++-
T Consensus 173 ~~~i~~Al----~~~Gp~lIeV~ 191 (280)
T PRK11869 173 KEILKEAI----KHKGLAIVDIF 191 (280)
T ss_pred HHHHHHHH----hCCCCEEEEEE
Confidence 55555555 56899999986
No 281
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=83.49 E-value=7.8 Score=43.42 Aligned_cols=150 Identities=16% Similarity=0.139 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHHHcCCC--EEEec----CCcchHHHHHhhhc-CCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCC
Q 007800 27 GTLGRHLARRLVEIGAK--DVFSV----PGDFNLTLLDHLIA-EPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFT 98 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~--~vfg~----pG~~~~~l~~al~~-~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~G 98 (589)
.+..+++.+.|.+..-+ .++.+ +|... + +.|.+ .|+=-+=...-|++++.+|.|.|.. |. .+|+ +..
T Consensus 278 ~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~--~-~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~-G~~Pvv~-~fs 352 (581)
T PRK12315 278 ESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFG--L-KEFRKKYPDQYVDVGIAEQESVAFASGIAAN-GARPVIF-VNS 352 (581)
T ss_pred cCHHHHHHHHHHHHhccCCCEEEEeCccccccC--c-HHHHHhccccccCCCchHHHHHHHHHHHHHC-cCeEEEE-eeH
Confidence 35566666666655332 34444 33321 2 33322 2321133457899999999999984 55 6663 333
Q ss_pred cchHHHHHHHH-HhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEE-EeCChhhHHHHHHHHH
Q 007800 99 VGGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTAI 176 (589)
Q Consensus 99 pG~~n~~~~l~-~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~-~v~~~~~~~~~l~~A~ 176 (589)
+=+.-++--|. ++...+.||+++....... +.++ -|| ...++.+++.+..... .+.++.++..+++.|+
T Consensus 353 ~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~--~dG~-TH~------~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~ 423 (581)
T PRK12315 353 TFLQRAYDQLSHDLAINNNPAVMIVFGGSIS--GNDV-THL------GIFDIPMISNIPNLVYLAPTTKEELIAMLEWAL 423 (581)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCccc--CCCc-ccc------ccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHH
Confidence 22223333222 2456789999987533222 1221 222 2334678888766544 5566666665555554
Q ss_pred HHhHhc-CCcEEEEeCCCC
Q 007800 177 STALKE-SKPVYISISCNL 194 (589)
Q Consensus 177 ~~a~~~-~gPV~i~iP~dv 194 (589)
.. .|||||.+|...
T Consensus 424 ----~~~~gP~~ir~~r~~ 438 (581)
T PRK12315 424 ----TQHEHPVAIRVPEHG 438 (581)
T ss_pred ----hCCCCcEEEEEcCCc
Confidence 43 699999999765
No 282
>PLN02573 pyruvate decarboxylase
Probab=83.29 E-value=17 Score=40.75 Aligned_cols=157 Identities=13% Similarity=0.009 Sum_probs=83.6
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT 472 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~ 472 (589)
..+++.|.+. .= ..++.=.|.+..... .+...++.+++....-. .+.-+|-|.+.+. +..|++.+--.+..-.
T Consensus 20 ~~l~~~L~~~-Gv-~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~---~A~~mAdgyaR~t-g~gv~~~t~GpG~~n~ 93 (578)
T PLN02573 20 RHLARRLVEI-GV-TDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNEL---NAGYAADGYARAR-GVGACVVTFTVGGLSV 93 (578)
T ss_pred HHHHHHHHHc-CC-CEEEECCCCchHHHHHHHhhcCCceEEEeCCHH---HHHHHHHHHHHHh-CCCeEEEecCccHHHH
Confidence 3445555543 22 234444555433221 12111234565554433 3445566777765 3334333322344556
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCC-CCCCCCCC---hHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhh
Q 007800 473 AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP-YNVIKNWD---YTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT 548 (589)
Q Consensus 473 ~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~-~~~~~~~d---~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~ 548 (589)
.+.+.+|...+.|+++|.-.-......+ +.. ...+...| ...+++.+-- ...+|.+++++.+.+++|+
T Consensus 94 ~~gla~A~~d~~Pvl~I~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~itk-----~s~~v~~~~~~~~~l~~A~ 165 (578)
T PLN02573 94 LNAIAGAYSENLPVICIVGGPNSNDYGT---NRILHHTIGLPDFSQELRCFQTVTC-----YQAVINNLEDAHELIDTAI 165 (578)
T ss_pred HHHHHHHHHhCCCEEEEECCCChhhhhc---CceeeeecCCCChHHHHHHhhceEE-----EEEEeCCHHHHHHHHHHHH
Confidence 8999999999999998886433221100 000 00011122 2345555543 6788888888777666666
Q ss_pred h--cCCCCeEEEEEEcCC
Q 007800 549 G--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 549 ~--~~~~gp~viev~~~~ 564 (589)
. ....||+.|++..|-
T Consensus 166 ~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 166 STALKESKPVYISVSCNL 183 (578)
T ss_pred HHHHhcCCCEEEEeehhh
Confidence 4 225689999998773
No 283
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=83.15 E-value=14 Score=36.93 Aligned_cols=158 Identities=14% Similarity=0.054 Sum_probs=89.0
Q ss_pred cccHHHHHHHHHHHcC---CCEEEecCCcchHHHHHhhh-cCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcch
Q 007800 26 VGTLGRHLARRLVEIG---AKDVFSVPGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~G---V~~vfg~pG~~~~~l~~al~-~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~ 101 (589)
..+..+.+.+.|.+.| -+-|.-........=+..+. +.|+=-+=...-||+.+.+|.|.|....+..+. |.++=+
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~-tfa~F~ 84 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVS-TFAAFL 84 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceee-chHHHH
Confidence 3456666777666654 34444443322222222222 223323445678999999999999875545443 333222
Q ss_pred H-HHHHHHHH-hhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHh
Q 007800 102 L-SVLNAIAG-AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (589)
Q Consensus 102 ~-n~~~~l~~-A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a 179 (589)
+ -+.--|.+ -.+++.||=+++.+........+. +||...-..++|.+....... |.+.. ..+.++..+
T Consensus 85 s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~-------sHq~~EDiaimR~lpn~~V~~--P~D~v-~~~~i~~~~ 154 (312)
T COG3958 85 SRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGS-------SHQALEDIAIMRGLPNMTVIA--PADAV-ETRAILDQI 154 (312)
T ss_pred HHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCc-------cchhHHHHHHHhcCCCceEEc--cCcHH-HHHHHHHHH
Confidence 1 11222222 234677877777665544221221 234455578888887665544 33333 667777777
Q ss_pred HhcCCcEEEEeCCCC
Q 007800 180 LKESKPVYISISCNL 194 (589)
Q Consensus 180 ~~~~gPV~i~iP~dv 194 (589)
...+||+|+.+.++-
T Consensus 155 ~~~~GP~Y~Rl~R~~ 169 (312)
T COG3958 155 ADYKGPVYMRLGRGK 169 (312)
T ss_pred HhcCCCEEEEecCCC
Confidence 778999999999843
No 284
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=83.13 E-value=2.1 Score=42.16 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=44.6
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc--cCCCCceEEEcCCceeecCC-CccccccHHHHHHHHHHHh
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKL 362 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~-~~~~~~~~~~~l~~L~~~l 362 (589)
.+.+.+.+||++|++|+++.-.....+.. ...+.++|.||.++...... ......++.++|++|.+.+
T Consensus 171 ~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 171 EAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHh
Confidence 45566789999999999876544333221 12456899999987655311 2333457888998887644
No 285
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=83.06 E-value=1.2 Score=45.25 Aligned_cols=89 Identities=20% Similarity=0.308 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh---CCceEEccCC-ccCCCCCCCCcee----eecCCCCCHH
Q 007800 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSG-KGLVPEHHPHFIG----TYWGAVSSSF 295 (589)
Q Consensus 224 ~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~---~~Pv~tt~~~-~g~~~~~~pl~~G----~~~g~~~~~~ 295 (589)
..++++.+|++|+..+|+-|+|..-+.++..+++++|++ |++|=--..- .|-.|.+---.+- .|+-.+--++
T Consensus 297 saedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaIHPVAGRmPGHMNVLLAEA~VpYd~v~emdd 376 (463)
T COG1282 297 SAEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFAIHPVAGRMPGHMNVLLAEAKVPYDIVLEMDE 376 (463)
T ss_pred CHHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEeecccccCCCcchhhhhhhccCCHHHHhhHHh
Confidence 346788999999999999999998887777777777766 4554332210 1222221100000 0000011134
Q ss_pred HHHHhhhcCEEEEeCCC
Q 007800 296 CGEIVESADAYVFVGPI 312 (589)
Q Consensus 296 ~~~~l~~aD~vl~lG~~ 312 (589)
.|+-+.++|++|++|+.
T Consensus 377 IN~dF~~tDVvlVIGAN 393 (463)
T COG1282 377 INDDFADTDVVLVIGAN 393 (463)
T ss_pred hcchhccccEEEEEccC
Confidence 45556799999999964
No 286
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=82.75 E-value=11 Score=42.20 Aligned_cols=123 Identities=13% Similarity=0.044 Sum_probs=72.2
Q ss_pred CeEEecCchhH---HHHhhhhhhhccCc-eEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCccccC----Ccc--
Q 007800 66 LNLVGCCNELN---AGYAADGYARSRGV-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSNDYG----TNR-- 134 (589)
Q Consensus 66 i~~v~~~hE~~---A~~~A~gyar~tg~-~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~----~~~-- 134 (589)
.+++....-.+ +.-+|.|++.+.++ .+|++ |=| +.-.++.+..|...++|+++|.-+......- ..+
T Consensus 416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i~--GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~ 493 (568)
T PRK07449 416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVALI--GDLSFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE 493 (568)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEe--chHHhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence 55665443322 45577887777555 44443 444 3334588888999999998887665532100 000
Q ss_pred -ceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 135 -ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
...+..+.....|..++.+.+--...++.+++++...+++|+ ..++|+.|++..|-
T Consensus 494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~----~~~~p~lIev~id~ 550 (568)
T PRK07449 494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADAL----PTPGLTVIEVKTNR 550 (568)
T ss_pred chhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHh----cCCCCEEEEEeCCh
Confidence 000011111112456677776666788888877766666654 45799999998763
No 287
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=82.70 E-value=2.5 Score=41.65 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc--cCCCCceEEEcCCceeecC-CCccccccHHHHHHHHHHHh
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKL 362 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L~~~l 362 (589)
.+.+.++++|++|++|+++.-.....+.. ..++.++|.||.++..+.. .......++..+|+.|.+.+
T Consensus 170 ~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 170 EAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 45566789999999998875433222221 2356689999998875431 12223347888888876654
No 288
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=82.69 E-value=9.2 Score=39.70 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=61.4
Q ss_pred eEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChh-
Q 007800 91 GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLG- 166 (589)
Q Consensus 91 ~v~~~t~GpG~~n~---~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~- 166 (589)
.++++..|=|.++- .-++..|..-++|+|+|.-+.... .+.. .+.... ..+.....+.+--...++...+
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~-i~~~--~~~~~~---~~d~a~~a~a~G~~~~~Vdg~d~ 231 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWA-IGMA--HHRSTS---IPEIHKKAEAFGLPGIEVDGMDV 231 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCee-eecc--hhheeC---CccHHHHHHhCCCCEEEEeCCCH
Confidence 56667778888772 224666777899999998764421 1110 000111 1244566666655666776554
Q ss_pred -hHHHHHHHHHHHhHhcCCcEEEEeCC
Q 007800 167 -DAHELIDTAISTALKESKPVYISISC 192 (589)
Q Consensus 167 -~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (589)
.+.+.+.+|++.|....||+.|++-.
T Consensus 232 ~av~~a~~~A~~~ar~~~gP~lIev~t 258 (341)
T CHL00149 232 LAVREVAKEAVERARQGDGPTLIEALT 258 (341)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 45778899999998888999999864
No 289
>PRK05261 putative phosphoketolase; Provisional
Probab=82.38 E-value=98 Score=35.81 Aligned_cols=116 Identities=10% Similarity=0.062 Sum_probs=73.1
Q ss_pred CCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHHHhh----h-----------cCCcEEEEeCCCCcc
Q 007800 65 ELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAY----S-----------ENLPVICIVGGPNSN 128 (589)
Q Consensus 65 ~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~~A~----~-----------~~~PllvI~g~~~~~ 128 (589)
+-++|....|..++.++.||+. +|+ +.+. |.- .+...+..+.+++ . ..+ ++++|.+.=.
T Consensus 449 ~Grvie~LsEh~~~g~~~Gy~L-tG~~~~~~-sYe-aF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sL-n~l~Ts~~~~- 523 (785)
T PRK05261 449 DGRVMEVLSEHLCEGWLEGYLL-TGRHGFFS-SYE-AFIHIVDSMFNQHAKWLKVAREIPWRKPIPSL-NYLLTSHVWR- 523 (785)
T ss_pred CCCeeeeecHHHHHHHHHHHHh-cCCCccee-cHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCcce-eEEeecceee-
Confidence 4578889999999999999999 787 5554 444 4554456666655 2 222 3555554322
Q ss_pred ccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-CCcEEEEeCCC
Q 007800 129 DYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (589)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~d 193 (589)
.+.+.+-| |.+.+++++...++=.-..+++.+..++.. |++.|+.. .+|..|.+...
T Consensus 524 -qghNG~TH---Q~Pg~ie~l~~~r~~~~rV~rPaDaNe~la----a~~~al~s~~~p~~IvlsRQ 581 (785)
T PRK05261 524 -QDHNGFSH---QDPGFIDHVANKKPDVIRVYLPPDANTLLA----VADHCLRSRNYINVIVAGKQ 581 (785)
T ss_pred -cCCCCCCC---CCchHHHHHHhcCCCcceEEeCCCHHHHHH----HHHHHHHhCCCCEEEEEeCC
Confidence 34443333 344578888777775556666666655544 45555543 58988887753
No 290
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=81.50 E-value=28 Score=39.53 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=83.6
Q ss_pred ccHHHHHHHHHHHcCC--CEEEec----CCc-chHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCc
Q 007800 27 GTLGRHLARRLVEIGA--KDVFSV----PGD-FNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV--~~vfg~----pG~-~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~Gp 99 (589)
++..+++.+.|.+..- +.|+.+ +++ ....+-+.+ |+=-+=...-|++++.+|.|.|....+.+|.+-+ +
T Consensus 381 ~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~f---PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iys-t 456 (701)
T PLN02225 381 RTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERF---PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPS-A 456 (701)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHc---cccccccCccHHHHHHHHHHHHHCCCEEEEEeeh-h
Confidence 4666666666655532 455554 322 222333333 3222345678999999999999754446665442 2
Q ss_pred chHHHHHHHH-HhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEE-EeCChhhHHHHHHHHHH
Q 007800 100 GGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTAIS 177 (589)
Q Consensus 100 G~~n~~~~l~-~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~-~v~~~~~~~~~l~~A~~ 177 (589)
=+.-++--|. ++...+.||.++... ..- .+.+..-||. . ....+++.+-.... .+.+++++..+++.|+.
T Consensus 457 FlqRAyDQI~~Dval~~lpV~~vid~-aGl-vg~DG~TH~g-----~-~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~ 528 (701)
T PLN02225 457 FLQRAYDQVVHDVDRQRKAVRFVITS-AGL-VGSDGPVQCG-----A-FDIAFMSSLPNMIAMAPADEDELVNMVATAAY 528 (701)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEC-Ccc-CCCCCccccc-----c-HHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 1222333332 255667787776533 221 2221112321 2 23577777765443 44666677666665542
Q ss_pred HhHhcCCcEEEEeCCCC
Q 007800 178 TALKESKPVYISISCNL 194 (589)
Q Consensus 178 ~a~~~~gPV~i~iP~dv 194 (589)
..++||||..|...
T Consensus 529 ---~~~gPv~IR~pRg~ 542 (701)
T PLN02225 529 ---VTDRPVCFRFPRGS 542 (701)
T ss_pred ---cCCCCEEEEecccc
Confidence 33699999999874
No 291
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=81.41 E-value=0.73 Score=49.05 Aligned_cols=88 Identities=27% Similarity=0.289 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh---CCceEEccC-CccCCCCCCCCc---ee-eecCCCCCHHH
Q 007800 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPS-GKGLVPEHHPHF---IG-TYWGAVSSSFC 296 (589)
Q Consensus 225 i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~---~~Pv~tt~~-~~g~~~~~~pl~---~G-~~~g~~~~~~~ 296 (589)
.++++.+|..|+|.+|+-|+|..-+.++.+++++++.| |+-|---.+ -.|-.|.+---- .+ .|+-..--++.
T Consensus 297 ~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGHMNVLLAEa~VpYd~~~emdei 376 (463)
T PF02233_consen 297 AEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMPGHMNVLLAEANVPYDIVKEMDEI 376 (463)
T ss_dssp HHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHH
T ss_pred HHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceEEEEecCCCHHHHhhhhhc
Confidence 46888999999999999999999888887777777655 443332111 012232210000 00 00001112466
Q ss_pred HHHhhhcCEEEEeCCC
Q 007800 297 GEIVESADAYVFVGPI 312 (589)
Q Consensus 297 ~~~l~~aD~vl~lG~~ 312 (589)
|+-+.+.|++|++|..
T Consensus 377 N~~f~~~Dv~lViGAN 392 (463)
T PF02233_consen 377 NPDFPDTDVVLVIGAN 392 (463)
T ss_dssp GGGGGG-SEEEEES-S
T ss_pred ccchhcCCEEEEeccc
Confidence 6678899999999965
No 292
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=81.29 E-value=3.8 Score=35.99 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=65.0
Q ss_pred HHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHH-HhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHcc
Q 007800 445 VGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMI-RCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIH 523 (589)
Q Consensus 445 l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~-~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 523 (589)
++.+.|+.+| +++...++=..+..-+.+.|...- .|++|+++++-.-+.+.-+ + +...--.--..++-+.++
T Consensus 55 ~GIcAGa~lA--Gkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~--i---~AQVpmGr~~~kiLe~~~ 127 (172)
T COG4032 55 VGICAGAYLA--GKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEG--I---EAQVPMGRALPKILEGLE 127 (172)
T ss_pred eeeehhhhhc--CCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcC--C---ccccccchhhHHHHhhcC
Confidence 3556788888 345556666777777888888764 4999988876655544321 0 011111235678999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEE
Q 007800 524 NGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFI 558 (589)
Q Consensus 524 ~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~vi 558 (589)
. +.+++.+++|-.+.++.+.. .+..+|+.+
T Consensus 128 l-----pt~t~~~p~Ea~~li~~~~~~a~~~s~pv~v 159 (172)
T COG4032 128 L-----PTYTIIGPEEALPLIENAILDAFENSRPVAV 159 (172)
T ss_pred C-----cccccCCHHHHHHHHHHHHHHHHHcCCceEE
Confidence 9 89999999884444444432 226667654
No 293
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=81.25 E-value=8.2 Score=40.70 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhcC--CCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHH
Q 007800 221 LEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~--rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~ 298 (589)
-+++++.+++.|++.+ +..++.|.... .+....+.+|++.+|.+.+.............. ..|. +..+. ...
T Consensus 71 WdeAl~~ia~~l~~~~~~~i~~~~~~~~~-~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~--~~~~~--~~~ 144 (386)
T cd02768 71 WEEALKTVAEGLKAVKGDKIGGIAGPRAD-LESLFLLKKLLNKLGSNNIDHRLRQSDLPADNR-LRGN--YLFNT--SIA 144 (386)
T ss_pred HHHHHHHHHHHHHhcChhheEEEecCCCC-HHHHHHHHHHHHHhCCCCchhhhccccCccccc-cccC--cccCC--CHH
Confidence 4678899999998876 55666555443 234567889999999876543211100000000 0011 11111 123
Q ss_pred HhhhcCEEEEeCCCcCCcccccccc----cC-CCCceEEEcCCce
Q 007800 299 IVESADAYVFVGPIFNDYSSVGYSL----LI-KKEKAIIVQPHRV 338 (589)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~----~~-~~~~~i~id~d~~ 338 (589)
=+.++|+||++|+.+.+.....+.. .. .+.++|.||+...
T Consensus 145 di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t 189 (386)
T cd02768 145 EIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDT 189 (386)
T ss_pred HHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 3569999999998765433211111 11 2678999998664
No 294
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=80.74 E-value=4.7 Score=43.06 Aligned_cols=113 Identities=26% Similarity=0.343 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeee-cCCCCCHHHHHH
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY-WGAVSSSFCGEI 299 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~-~g~~~~~~~~~~ 299 (589)
-++.++.+++.|+++++++++.+... ..+....+.+|++.+|..+-. ... +. ..+...+.. .|... ....++
T Consensus 62 WdeAl~~ia~~l~~~~~~~~~~~~~~-~~e~~~~~~~l~~~~g~~~~~-~~~---~~-~~~~~~~~~~~g~~~-~~~~di 134 (421)
T TIGR03129 62 YEEAIEKAAEILKNAKRPLIYGWSST-SCEAQRAGLELAEKLGAVIDN-TAS---VC-HGPSLLALQEVGWPS-CTLGEV 134 (421)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEcccC-CHHHHHHHHHHHHHHCCCccc-cch---hc-cccHHHHHHhcCCcc-ccHHHH
Confidence 56788999999999988877655543 334556788999988863211 000 00 001100000 01111 112344
Q ss_pred hhhcCEEEEeCCCcCCcccccc-----------ccc-CCCCceEEEcCCceee
Q 007800 300 VESADAYVFVGPIFNDYSSVGY-----------SLL-IKKEKAIIVQPHRVTV 340 (589)
Q Consensus 300 l~~aD~vl~lG~~~~~~~~~~~-----------~~~-~~~~~~i~id~d~~~~ 340 (589)
..++|+||++|+.+.+.....+ ... .++.++|.||+.....
T Consensus 135 ~~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t 187 (421)
T TIGR03129 135 KNRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDT 187 (421)
T ss_pred hhcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCc
Confidence 3579999999987644322111 011 2345899998866543
No 295
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=80.59 E-value=30 Score=33.87 Aligned_cols=88 Identities=17% Similarity=0.081 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCccccC--Cccc----eeee----cCC------CChHHHHHhhhccee-E--EEEeC
Q 007800 103 SVLNAIAGAYSENLPVICIVGGPNSNDYG--TNRI----LHHT----IGL------PDFTQELRCFQAITC-S--QAVVN 163 (589)
Q Consensus 103 n~~~~l~~A~~~~~PllvI~g~~~~~~~~--~~~~----~~~~----~~~------~~~~~~~~~~~~~tk-~--~~~v~ 163 (589)
-.+..|..|...++|+++|.-+......- ...+ .... .+. ....|...+.+.+-- + ..++.
T Consensus 95 m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~ 174 (235)
T cd03376 95 IGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVA 174 (235)
T ss_pred hHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCC
Confidence 45688999999999999998775543210 0000 0000 000 011245566666543 3 24677
Q ss_pred ChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 164 NLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 164 ~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
+++++.+.+++|+ ..+||+.|++..+=
T Consensus 175 ~~~el~~al~~a~----~~~gP~lIev~~~C 201 (235)
T cd03376 175 YPEDLYKKVKKAL----SIEGPAYIHILSPC 201 (235)
T ss_pred CHHHHHHHHHHHH----hCCCCEEEEEECCC
Confidence 7777766666665 45799999997654
No 296
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=80.37 E-value=12 Score=35.26 Aligned_cols=108 Identities=18% Similarity=0.100 Sum_probs=59.1
Q ss_pred HHHhhhhhhhccC-ceEEEEeCCcch-HHHHHHHHHhhhcCC-cEEEEeCCCCccccCCccceeeecCCCChHHHHHhhh
Q 007800 77 AGYAADGYARSRG-VGACVVTFTVGG-LSVLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ 153 (589)
Q Consensus 77 A~~~A~gyar~tg-~~v~~~t~GpG~-~n~~~~l~~A~~~~~-PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (589)
+.-+|.|.+.+.. +-|++++ |=|. .-.+..+..+...+. |+++|.-+......-.+. .... ...|...+.+
T Consensus 53 ~lpaAiGaala~p~~~Vv~i~-GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~---~~~~--~~~d~~~~A~ 126 (188)
T cd03371 53 ASQIALGIALARPDRKVVCID-GDGAALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQ---PTVS--FDVSLPAIAK 126 (188)
T ss_pred HHHHHHHHHHhCCCCcEEEEe-CCcHHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCc---CCCC--CCCCHHHHHH
Confidence 3446677665543 4333333 4443 334577888777775 677766554332111110 0111 1124556666
Q ss_pred cce-eEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 154 AIT-CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 154 ~~t-k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
.+- ++..++.+++++.+.+++|+ ..++|+.|++..+-
T Consensus 127 a~G~~~~~~v~~~~el~~al~~a~----~~~~p~lIev~~~~ 164 (188)
T cd03371 127 ACGYRAVYEVPSLEELVAALAKAL----AADGPAFIEVKVRP 164 (188)
T ss_pred HcCCceEEecCCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 653 34456777777766666554 45799999998765
No 297
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=78.85 E-value=17 Score=37.78 Aligned_cols=119 Identities=16% Similarity=0.049 Sum_probs=70.4
Q ss_pred EEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCC-
Q 007800 68 LVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL- 142 (589)
Q Consensus 68 ~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~- 142 (589)
.+....=--|+.+|.+....... .|+++..|=|++| ..-++-=|..-+.|+|+++=...-.. +.. +..+.
T Consensus 136 ~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAi-Svp----~~~q~~ 210 (358)
T COG1071 136 GIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAI-SVP----RSRQTA 210 (358)
T ss_pred ceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCcee-ecc----hhhccc
Confidence 34444444566666664333324 5999999999887 33444446667999999985432221 110 01110
Q ss_pred CChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 143 PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 143 ~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
.+...+....-.+.-....=.++..+.+...+|.+.|..+.||+.|+.=
T Consensus 211 ~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 211 AEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred chhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 1112222232334444444457778899999999999999999999864
No 298
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=78.61 E-value=7.9 Score=39.50 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=68.0
Q ss_pred CEEEeCcccchhhHHHHHHHHHHHhCCceEEccC---CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcC
Q 007800 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS---GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN 314 (589)
Q Consensus 238 pviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~---~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~ 314 (589)
-|+-.|+|....+..+.+++||+.+|.-|-.|-. ..|.+|.+ ..+|.. |.. =.+|+.|++|-+=.
T Consensus 196 vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~--~QIGqT-Gk~---------V~P~lYiA~GISGA 263 (312)
T PRK11916 196 RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE--RYIGVS-GVL---------LKSDLYLTLGISGQ 263 (312)
T ss_pred EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChh--cEECCC-CCC---------cCccEEEEeccccH
Confidence 3455666776666789999999999998887653 12455543 445652 321 25799999995421
Q ss_pred CcccccccccCCCCceEEEcCCceeec-CCCccc-cccHHHHHHHHHHHhh
Q 007800 315 DYSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLG-WVFMADFLSALAKKLR 363 (589)
Q Consensus 315 ~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~-~~~~~~~l~~L~~~l~ 363 (589)
..+ ..-......+|-||.|+...= ....|+ -.|+.+++++|.+.++
T Consensus 264 -iQH--~aGm~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 264 -IQH--MVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred -HHH--HhhcccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 111 011122335888999987421 011222 2489999999998874
No 299
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=78.34 E-value=43 Score=39.16 Aligned_cols=182 Identities=14% Similarity=0.082 Sum_probs=103.5
Q ss_pred CCeEEecCchhHHHH--hhhhhhhc-cCc--eEEEEeCCc-chHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceee
Q 007800 65 ELNLVGCCNELNAGY--AADGYARS-RGV--GACVVTFTV-GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH 138 (589)
Q Consensus 65 ~i~~v~~~hE~~A~~--~A~gyar~-tg~--~v~~~t~Gp-G~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~ 138 (589)
+=-+-.-..|++++. +|.|.+.. .|+ -.+..+..+ |..=+.--+-.+-..+.++.+|++.......+..-.-|+
T Consensus 560 ~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq 639 (889)
T TIGR03186 560 GQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQ 639 (889)
T ss_pred CcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCccccc
Confidence 334556789999987 88886665 344 344445544 223344555556677788888877766532232212232
Q ss_pred ecCCCChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhc--CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCC
Q 007800 139 TIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKE--SKPVYISISCNLPGIPHPTFARDPVPFFLAPKV 215 (589)
Q Consensus 139 ~~~~~~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~--~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~ 215 (589)
...-..+++.+-. -.+.+.++.++..+++.+++.+... .||+||.+...-.. .+........ .
T Consensus 640 ------~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~--~p~~~~~~~~----~-- 705 (889)
T TIGR03186 640 ------DGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYA--QPSLPEDRLD----A-- 705 (889)
T ss_pred ------chHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCC--CCCcCCCccc----c--
Confidence 2223566666543 3556778889999999999966654 59999999865321 1110000000 0
Q ss_pred CChhhHHHHHHHHHHHHHhc---CCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 216 SNQLGLEAAVEATADFLNKA---VKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 216 ~~~~~~~~~i~~~~~~L~~a---~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
.+..+-+....|... ..-+.|+|.|.-...+.++...|++++|+-
T Consensus 706 -----~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~ 753 (889)
T TIGR03186 706 -----VRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGID 753 (889)
T ss_pred -----hhcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCC
Confidence 000111111223321 234777788877777888888888876643
No 300
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=77.68 E-value=55 Score=37.00 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHHHcCC--CEEEe----cCCcchHHHHH-hhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCc
Q 007800 27 GTLGRHLARRLVEIGA--KDVFS----VPGDFNLTLLD-HLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV--~~vfg----~pG~~~~~l~~-al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~Gp 99 (589)
++..+++.+.|.+..- +.|+. ++|+.....+. .+ |+=-+=...-|++++.+|.|.|...-+.+|.. ..+
T Consensus 357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~f---PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~-fs~ 432 (641)
T PLN02234 357 QSYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRF---PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTI-YSS 432 (641)
T ss_pred CCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHHc---cccccCCCcCHHHHHHHHHHHHHCCCeEEEEe-hHH
Confidence 5677777777776543 23333 33433333332 22 22123345789999999999999543466554 322
Q ss_pred chHHHHHHH-HHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEE-EEeCChhhHHHHHHHHHH
Q 007800 100 GGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAIS 177 (589)
Q Consensus 100 G~~n~~~~l-~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~ 177 (589)
=+.-++.-| .++...+.|++++...... .+.+..-|+ ......+++.+-... ..+.++.++..+++.|+.
T Consensus 433 Fl~RA~DQI~~dva~~~lpV~~v~~~aG~--~g~dG~TH~------~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~ 504 (641)
T PLN02234 433 FMQRAYDQVVHDVDLQKLPVRFAIDRAGL--MGADGPTHC------GAFDVTFMACLPNMIVMAPSDEAELFNMVATAAA 504 (641)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCCcc--CCCCCcccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 122233333 2345789999887622221 121111222 223355666554332 234566666555554432
Q ss_pred HhHhcCCcEEEEeCCCC
Q 007800 178 TALKESKPVYISISCNL 194 (589)
Q Consensus 178 ~a~~~~gPV~i~iP~dv 194 (589)
...+|++|..|...
T Consensus 505 ---~~~~Pv~ir~~R~~ 518 (641)
T PLN02234 505 ---IDDRPSCFRYHRGN 518 (641)
T ss_pred ---CCCCCEEEEeeccc
Confidence 23699999999765
No 301
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=77.58 E-value=13 Score=39.90 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=59.7
Q ss_pred eEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeC--Ch
Q 007800 91 GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NL 165 (589)
Q Consensus 91 ~v~~~t~GpG~~n~---~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~--~~ 165 (589)
.++++..|=|.++- .-++.-|..-++|+|++.-+.... .+.- + ..+.. ..+.....+.+--...++. ++
T Consensus 224 ~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~ya-ig~~---~-~~~t~-~~dia~~A~a~G~~~~~VDG~D~ 297 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMS---H-LRATS-DPEIWKKGPAFGMPGVHVDGMDV 297 (433)
T ss_pred CEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEe-ecce---e-eeccC-CCCHHHHHHhcCCcEEEECCCCH
Confidence 56677778887762 236677888899999998653211 1110 0 00100 1123444555544455554 44
Q ss_pred hhHHHHHHHHHHHhHhcCCcEEEEeCC
Q 007800 166 GDAHELIDTAISTALKESKPVYISISC 192 (589)
Q Consensus 166 ~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (589)
..+.+.+.+|++.|....||+.|++-.
T Consensus 298 ~av~~a~~~A~~~Ar~g~gP~LIe~~t 324 (433)
T PLN02374 298 LKVREVAKEAIERARRGEGPTLVECET 324 (433)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 466788899999999889999999753
No 302
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=77.58 E-value=7.7 Score=39.61 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=68.5
Q ss_pred CEEEeCcccchhhHHHHHHHHHHHhCCceEEccCC---ccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcC
Q 007800 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG---KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN 314 (589)
Q Consensus 238 pviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~---~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~ 314 (589)
.|+-.|+|....+..+.+++||+.+|.-|-.|-.- .|-+| |...+|.. |.. =.+|+.|.+|-+=.
T Consensus 197 vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p--~~~QIGqT-Gk~---------V~P~lYiA~GISGa 264 (313)
T PRK03363 197 LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWME--HERYVGIS-NLM---------LKPELYLAVGISGQ 264 (313)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCC--HHheecCC-CCC---------cCccEEEEEccccH
Confidence 44456667777678899999999999988876532 23555 44556653 321 25799999995411
Q ss_pred CcccccccccCCCCceEEEcCCceeec-CCCccc-cccHHHHHHHHHHHhh
Q 007800 315 DYSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLG-WVFMADFLSALAKKLR 363 (589)
Q Consensus 315 ~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~-~~~~~~~l~~L~~~l~ 363 (589)
..+ ..-......+|-||.|+...= ....|+ -.|+.++|++|.+.++
T Consensus 265 -iQH--~~Gm~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 265 -IQH--MVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred -HHH--HhhcccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 111 011122335888999887421 011222 2389999999998874
No 303
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=77.57 E-value=4.7 Score=39.65 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=43.5
Q ss_pred HHHHHHhhhcCEEEEeCCCcCCcccccccc--cCCCCceEEEcCCceeecC-CCccccccHHHHHHHHHHHh
Q 007800 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKL 362 (589)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L~~~l 362 (589)
....+++.+||++|++|+++.-.....+-. ...+.++|.||.++..... .......++..+|++|.+.+
T Consensus 164 ~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 164 DEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHHH
Confidence 345667899999999999876554333222 1245678999988754321 11122246788888876654
No 304
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=77.15 E-value=7.8 Score=40.29 Aligned_cols=112 Identities=19% Similarity=0.255 Sum_probs=67.9
Q ss_pred CEEEeCcccchhhHHHHHHHHHHHhCCceEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCC
Q 007800 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315 (589)
Q Consensus 238 pviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~--~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~ 315 (589)
.|+-.|+|....+..+.+++||+.+|.-|-.|-. ..|.+|. ...+|.. |.. =.+|+.|.+|-+=.
T Consensus 239 vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~--~~QIGqT-Gk~---------V~P~lYIA~GISGA- 305 (356)
T PLN00022 239 VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPN--DLQVGQT-GKI---------VAPELYIAVGISGA- 305 (356)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCCh--HheeccC-CCC---------cCCcEEEEEecchH-
Confidence 4445666666666789999999999988876543 2344443 3445542 221 26799999995411
Q ss_pred cccccccccCCCCceEEEcCCceeec-CCCccc-cccHHHHHHHHHHHhhc
Q 007800 316 YSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLG-WVFMADFLSALAKKLRK 364 (589)
Q Consensus 316 ~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~-~~~~~~~l~~L~~~l~~ 364 (589)
..+ ..-......+|-||.|+...= ....|+ -.|+.+++++|.+.++.
T Consensus 306 iQH--~~Gm~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk~ 354 (356)
T PLN00022 306 IQH--LAGMKDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLPE 354 (356)
T ss_pred HHH--HhhcccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHHh
Confidence 111 111122335788999887421 011222 24899999999998864
No 305
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=76.90 E-value=12 Score=39.28 Aligned_cols=65 Identities=14% Similarity=0.344 Sum_probs=33.8
Q ss_pred CcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--
Q 007800 458 KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR-- 535 (589)
Q Consensus 458 ~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~-- 535 (589)
..++.+.|-|++.|-. .+.+.+ +-.=.++|++|+.||- .|.++|+.+|. +...++
T Consensus 56 ~~~~ll~gsGt~amEA-av~sl~--~pgdkVLv~~nG~FG~---------------R~~~ia~~~g~-----~v~~~~~~ 112 (383)
T COG0075 56 GDVVLLSGSGTLAMEA-AVASLV--EPGDKVLVVVNGKFGE---------------RFAEIAERYGA-----EVVVLEVE 112 (383)
T ss_pred CcEEEEcCCcHHHHHH-HHHhcc--CCCCeEEEEeCChHHH---------------HHHHHHHHhCC-----ceEEEeCC
Confidence 3566666666655421 011111 1222566777777764 46666666666 333332
Q ss_pred -----CHHHHHHHHH
Q 007800 536 -----SEDELTEAMK 545 (589)
Q Consensus 536 -----~~~~l~~al~ 545 (589)
++++++++|+
T Consensus 113 wg~~v~p~~v~~~L~ 127 (383)
T COG0075 113 WGEAVDPEEVEEALD 127 (383)
T ss_pred CCCCCCHHHHHHHHh
Confidence 5566666555
No 306
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.72 E-value=2.8 Score=47.44 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhcC---------------CC--EEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCC-C--CCC
Q 007800 221 LEAAVEATADFLNKAV---------------KP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLV-P--EHH 280 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~---------------rp--viv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~-~--~~~ 280 (589)
-+++++.+++.|++.+ +| +.+.|+.....+..-.+.+|+..+|.+.+... ++--. + ..+
T Consensus 73 WdeAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~l 151 (649)
T cd02752 73 WDEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAGL 151 (649)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHHH
Confidence 4567888888877643 34 55555544333445578899999998765432 11000 0 000
Q ss_pred CCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCccccccccc----CC-CCceEEEcCCceee
Q 007800 281 PHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IK-KEKAIIVQPHRVTV 340 (589)
Q Consensus 281 pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~-~~~~i~id~d~~~~ 340 (589)
...+|. |...+ ...+ +++||+||++|+...+.....+..+ .+ +.++|.||+.....
T Consensus 152 ~~~~G~--ga~tn-s~~D-i~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~T 212 (649)
T cd02752 152 ANTFGR--GAMTN-SWND-IKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRT 212 (649)
T ss_pred HhhcCC--CCCCC-CHHH-HhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCch
Confidence 111221 11111 1223 5889999999987654333222211 12 67999999876543
No 307
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=75.52 E-value=15 Score=37.07 Aligned_cols=159 Identities=16% Similarity=0.019 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHHcCCC--EEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccC-c-eEEEEeCCcchHH
Q 007800 28 TLGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGLS 103 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV~--~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~-~v~~~t~GpG~~n 103 (589)
..-.+|.+.|.+.|++ ...-+.|......+-.+. ....+...| .-+.-+|.|.+.+.. + .++++-=|-++.-
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~~~---~~~~~~g~m-G~alpaAiGaklA~Pd~~VV~i~GDG~~f~m 102 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVVSGIGCSGRLPGYI---NTYGFHTIH-GRALAIATGLKLANPDLTVIVVTGDGDALAI 102 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccccccCccc---cccchhhhh-hcHHHHHHHHHHhCCCCcEEEEeCccHHHhC
Confidence 3567788888887763 222223333222111111 112222334 445557778776654 3 4444433333455
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccc------ee----eecCCCC-hHHHHHhhhccee-EEE--EeCChhhHH
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRI------LH----HTIGLPD-FTQELRCFQAITC-SQA--VVNNLGDAH 169 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~------~~----~~~~~~~-~~~~~~~~~~~tk-~~~--~v~~~~~~~ 169 (589)
.++.+..|...++|+++|.-+......-.++. .. ...+..+ -.+...+...+-. +.. .+.+++++.
T Consensus 103 g~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~ 182 (286)
T PRK11867 103 GGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLT 182 (286)
T ss_pred CHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHH
Confidence 57889999999999999876543321111100 00 0011111 0234444444322 221 344566555
Q ss_pred HHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 170 ELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 170 ~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
..|++| ...+||++|++..+=
T Consensus 183 ~al~~A----l~~~Gp~lIev~~~C 203 (286)
T PRK11867 183 ELIKAA----INHKGFSFVEILQPC 203 (286)
T ss_pred HHHHHH----HhCCCCEEEEEeCCC
Confidence 555555 456899999987553
No 308
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=75.39 E-value=9.7 Score=48.19 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=75.9
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcc-cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQV-TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~-~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+ .+++.||++-=|.-.. .+..+.+|..-+.|+++|.-+-...... .+.
T Consensus 340 i~~i~~rhEr---sAafmAdGyAR~-TgkpgV~i~TsGPG~tN~l~av~eA~~d~vPlLvItgd~p~~~~~----~ga-- 409 (1655)
T PLN02980 340 TTCIACFDER---SLAFHALGYARG-SLKPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQD----AGA-- 409 (1655)
T ss_pred CeEEeccCcc---hHHHHHHHHHHH-hCCCEEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhc----CCC--
Confidence 4455544444 333467888887 4789888887774444 5899999999999998888664432221 112
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHH------HHHHHHhhh---cCCCCeEEEEEEc
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDEL------TEAMKTATG---EQKDSLCFIEVFV 562 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l------~~al~~a~~---~~~~gp~viev~~ 562 (589)
+..+|-..+++.+-- ..++|.+++++ ..++++|+. ....||+.|+++.
T Consensus 410 -~Q~iDq~~lf~pvtK-----~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 410 -NQAINQVNHFGSFVR-----FFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred -CcccchhhHHHhhhh-----eeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 234577778888765 67777777662 344554443 1235899999994
No 309
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=75.36 E-value=3.7 Score=40.19 Aligned_cols=64 Identities=13% Similarity=-0.018 Sum_probs=38.2
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc-cCCCCceEEEcCCceeec--C-CCccccccHHHHHHHH
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHRVTVG--N-GPSLGWVFMADFLSAL 358 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~--~-~~~~~~~~~~~~l~~L 358 (589)
.+.+.+++||++|++|+++.-..-..+-. ...+.++|.||.++.... . ..++...++.++|+.|
T Consensus 168 ~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 168 HMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 44566788999999999976544322211 123467888998875431 0 1123334667777653
No 310
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=75.12 E-value=28 Score=33.04 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=63.0
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHH--HHHhhhc-----CCCCeEEecCchhHHHH-hh--hh----hhh---ccC
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIA-----EPELNLVGCCNELNAGY-AA--DG----YAR---SRG 89 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~--l~~al~~-----~~~i~~v~~~hE~~A~~-~A--~g----yar---~tg 89 (589)
...++.|++.+.+.+-=++||+-|+.... +...|.. +++++.+....+..-.. .| .| |+| ...
T Consensus 28 ~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~ 107 (196)
T PRK10886 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALG 107 (196)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcC
Confidence 46778888999888988999997775433 2222321 35777775433333211 11 12 222 112
Q ss_pred -c-eEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCcc
Q 007800 90 -V-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 90 -~-~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~~ 128 (589)
+ =++++-|+.| .-|.+.++.-|+..+.|+|.||+.....
T Consensus 108 ~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 2 3444444555 5678899999999999999999975544
No 311
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=74.93 E-value=5.8 Score=43.07 Aligned_cols=116 Identities=17% Similarity=0.082 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhc-----CCCEEEeCc-ccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCH
Q 007800 221 LEAAVEATADFLNKA-----VKPVLVGGP-NIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a-----~rpviv~G~-g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~ 294 (589)
-+++++.+++.|++. ..-+.+.++ +...........+|+..+|-|-+.........+......+|.. ...
T Consensus 87 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~----~~~ 162 (461)
T cd02750 87 WDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQ----TDV 162 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCC----CCC
Confidence 456777777777631 222333332 2222223345678888888776543322221222233333321 111
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc----CCCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~~ 340 (589)
....-+.+||+||++|+...+.....+..+ .++.++|.||+.....
T Consensus 163 ~~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~t 212 (461)
T cd02750 163 PESADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPS 212 (461)
T ss_pred CChhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcc
Confidence 123345899999999987644322121111 2456899999876544
No 312
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=74.53 E-value=19 Score=36.97 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhh--------HHHHHHHHHHHhCCceEEcc---CCcc---------------C
Q 007800 222 EAAVEATADFLNKAVKPVLVGGPNIRVAK--------AQKAFIELADATGYPIAIMP---SGKG---------------L 275 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rpviv~G~g~~~~~--------~~~~l~~lae~~~~Pv~tt~---~~~g---------------~ 275 (589)
.+.+.++++++++|+-.+|+.|-|...+. +...+++|-|..++-+...- +-.| -
T Consensus 232 ~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~mrgH~Nv~GFnqv~~~e~GYpf~vd 311 (429)
T COG1029 232 IEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPMRGHYNVTGFNEVLSWETGYPFAVD 311 (429)
T ss_pred HHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEeccccccccccchhhhhhCCceeee
Confidence 35788999999999999999999998761 23344444444443333211 1011 1
Q ss_pred CCCCCCCceeeecCCCCCHHHHHHh--hhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCce
Q 007800 276 VPEHHPHFIGTYWGAVSSSFCGEIV--ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (589)
Q Consensus 276 ~~~~~pl~~G~~~g~~~~~~~~~~l--~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (589)
|...+|.|- . |.-.+.++| +++|..|++|+.+.......-........+|+||+-+.
T Consensus 312 F~rG~pryn---P---gE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIPvI~iDp~~~ 370 (429)
T COG1029 312 FSRGYPRYN---P---GEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIPVICIDPHPT 370 (429)
T ss_pred cccCCcCCC---c---ccccHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCCEEEecCCCC
Confidence 122222210 0 122466777 47999999998764332222112223457899988654
No 313
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=74.10 E-value=5.7 Score=40.12 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=44.6
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc--cCCCCceEEEcCCceeecCC-CccccccHHHHHHHHHHHhh
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKLR 363 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~-~~~~~~~~~~~l~~L~~~l~ 363 (589)
.+.+.+.++|++|++|+++.-.....+-. ...+.++|.||.++...... ......++.++|+.|.+.|.
T Consensus 207 ~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 207 AARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhC
Confidence 45567789999999999886544322211 12345899999887654311 12223478899999877764
No 314
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=74.09 E-value=11 Score=39.56 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhcC--CCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHH
Q 007800 221 LEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~--rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~ 298 (589)
-+++++.+++.|++.+ ...++.|.... .+....+++|++.+|.+-+.+.......+.. ....+ ..+. ...+
T Consensus 70 WdeAl~~ia~~l~~~~~~si~~~~g~~~~-~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~~---~~~~~--~~~~-~~~d 142 (375)
T cd02773 70 WEEALAAIAKALKGVKPDEIAAIAGDLAD-VESMVALKDLLNKLGSENLACEQDGPDLPAD---LRSNY--LFNT-TIAG 142 (375)
T ss_pred HHHHHHHHHHHHhhcCcCcEEEEeCCCCC-HHHHHHHHHHHHHhCCCcccccccccccccc---ccccc--ccCC-CHHH
Confidence 5678888899888764 55555554332 2445678899999998765433221111110 00011 1111 1223
Q ss_pred HhhhcCEEEEeCCCcCCc-ccccccc---c-CCCCceEEEcCCce
Q 007800 299 IVESADAYVFVGPIFNDY-SSVGYSL---L-IKKEKAIIVQPHRV 338 (589)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~-~~~~~~~---~-~~~~~~i~id~d~~ 338 (589)
+.+||+||++|+.+.+. ....+.. . ..+.++|.||+...
T Consensus 143 -i~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~ 186 (375)
T cd02773 143 -IEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVD 186 (375)
T ss_pred -HhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccc
Confidence 58999999999876433 2212211 1 13568999987654
No 315
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=73.46 E-value=5.3 Score=38.77 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=40.1
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc--cCCCCceEEEcCCceeecC-CCccccccHHHHHHHH
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSAL 358 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L 358 (589)
.+.+.++++|++|++|+++.-.....+-. ..++.++|.||.++..+.. .......|+..+|+.|
T Consensus 157 ~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 157 EAVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHh
Confidence 35566789999999998865443322221 1356689999998775531 1223344677777765
No 316
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=72.66 E-value=19 Score=40.01 Aligned_cols=111 Identities=8% Similarity=-0.029 Sum_probs=63.3
Q ss_pred hhhhhhhcc-CceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCc-cceeeecCCCChHHHHHhhhccee
Q 007800 80 AADGYARSR-GVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-RILHHTIGLPDFTQELRCFQAITC 157 (589)
Q Consensus 80 ~A~gyar~t-g~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~tk 157 (589)
+|.|.+.+. ++-|++++.--|+.-.+.-|..|...++|+++|.-.......-+. ....+........|...+.+.+-.
T Consensus 412 aaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~ 491 (539)
T TIGR03393 412 AAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSL 491 (539)
T ss_pred HHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCC
Confidence 456655554 343333333334444568888999999999888876543311000 000000000111244556666543
Q ss_pred ----EEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 158 ----SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 158 ----~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
.+.++++.+++.+.+++|+ ...||+.|++..|-
T Consensus 492 ~~~~~~~~v~~~~el~~al~~a~----~~~~p~liev~i~~ 528 (539)
T TIGR03393 492 DPQSECWRVSEAEQLADVLEKVA----AHERLSLIEVVLPK 528 (539)
T ss_pred CCccceEEeccHHHHHHHHHHHh----ccCCeEEEEEEcCc
Confidence 3778888887766666665 45799999998763
No 317
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=72.51 E-value=23 Score=38.34 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=59.6
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcc-cHHHHH-HHH--------HhCCCeEEEEEeCCchhhhhhhcCCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQV-TAQEIS-TMI--------RCGQRSIIFLINNGGYTIEVEIHDGPYNVIKN 512 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~-~~~el~-ta~--------~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~ 512 (589)
..++.|.|++++ .-+|++.+.. ..|.+ .+.-+. .+. +.++|++++ .-|+++.. .+. -+.
T Consensus 200 ~~vg~AaGlA~~-G~rPiv~~~~-~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~-g~~G~~~~-----~G~---hhs 268 (464)
T PRK11892 200 GFAGIGVGAAFA-GLKPIVEFMT-FNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFR-GPNGAAAR-----VAA---QHS 268 (464)
T ss_pred HHHHHHHHHHhC-CCEEEEEEeh-HHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEE-ecCCCCCC-----CCC---ccc
Confidence 456778888885 3455554431 12222 233332 233 568997776 44554321 011 134
Q ss_pred CChHHHHHHc-cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEE
Q 007800 513 WDYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 558 (589)
Q Consensus 513 ~d~~~la~a~-G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vi 558 (589)
.++..+.+.+ |. +.+.-.+..|++..|+.++. .++|++|
T Consensus 269 ~~d~a~~~~iPgl-----~V~~P~d~~d~~~ll~~ai~--~~~Pv~i 308 (464)
T PRK11892 269 QDYAAWYSHIPGL-----KVVAPYSAADAKGLLKAAIR--DPNPVIF 308 (464)
T ss_pred cCHHHHHhhCCCC-----EEEEeCCHHHHHHHHHHHhh--CCCcEEE
Confidence 5666666666 44 77777899999999999996 6789887
No 318
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=71.84 E-value=33 Score=31.34 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHc
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 522 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 522 (589)
..++.|.|+++.. .++++.....-. ......+.+...++ ++.+|+....++.... ++. .-...+...+.+.+
T Consensus 60 ~~vg~a~GlA~~G-~~pi~~~~~~f~-~~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~---~G~--tH~~~~~~~~~~~i 131 (168)
T smart00861 60 AMVGFAAGLALAG-LRPVVAIFFTFF-DRAKDQIRSDGAMG-RVPVVVRHDSGGGVGE---DGP--THHSQEDEALLRAI 131 (168)
T ss_pred HHHHHHHHHHHcC-CCcEEEeeHHHH-HHHHHHHHHhCccc-CCCEEEEecCccccCC---CCc--cccchhHHHHHhcC
Confidence 4567788888864 366666654322 23445555555566 4555555533322200 110 00122333333333
Q ss_pred cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007800 523 HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560 (589)
Q Consensus 523 G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev 560 (589)
- ++..+...+++|++..++.+++ ..++|.+|-+
T Consensus 132 P----~~~v~~P~~~~e~~~~l~~a~~-~~~~p~~i~~ 164 (168)
T smart00861 132 P----GLKVVAPSDPAEAKGLLRAAIR-RDDGPPVIRL 164 (168)
T ss_pred C----CcEEEecCCHHHHHHHHHHHHh-CCCCCEEEEe
Confidence 2 1367777899999999999995 3467876644
No 319
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=71.80 E-value=43 Score=35.00 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=58.8
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEcchhhcc-cHHHHHH-HHHhC--------CCeEEEEEeCCchhhhhhhcCCCCCCCC
Q 007800 442 GWSVGATLGYAQAAKDKRVIACIGDGSFQV-TAQEIST-MIRCG--------QRSIIFLINNGGYTIEVEIHDGPYNVIK 511 (589)
Q Consensus 442 G~~l~~aiGaala~~~~~vv~i~GDGsf~~-~~~el~t-a~~~~--------l~v~ivv~nN~~~~~~~~~~~~~~~~~~ 511 (589)
...++.|.|++++ ..+|++.+.. ..|++ ....|.+ +...+ +|++++..+ +.+.- .+.. +
T Consensus 84 q~~vg~AaGlA~~-G~~P~v~~~~-~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g-----~G~t---H 152 (356)
T PLN02683 84 AGFTGIGVGAAYA-GLKPVVEFMT-FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAG-----VGAQ---H 152 (356)
T ss_pred HHHHHHHHHHHHC-CCEEEEEEeh-hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCC-----CCCc---c
Confidence 3567888888886 2455544321 22333 2344433 34444 898876544 43210 1111 2
Q ss_pred CCChHHHHHHc-cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEE
Q 007800 512 NWDYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 559 (589)
Q Consensus 512 ~~d~~~la~a~-G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vie 559 (589)
...+..+.+++ |. ..+...|..|++.+++.++. .++|++|-
T Consensus 153 ~~~~~a~lr~iPnl-----~V~~Pad~~e~~~~l~~a~~--~~gPv~ir 194 (356)
T PLN02683 153 SQCFAAWYSSVPGL-----KVLAPYSSEDARGLLKAAIR--DPDPVVFL 194 (356)
T ss_pred ccCHHHHHhcCCCC-----EEEEeCCHHHHHHHHHHHHh--CCCcEEEE
Confidence 22234566665 44 77777899999999999986 67899884
No 320
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=71.69 E-value=35 Score=31.84 Aligned_cols=88 Identities=11% Similarity=0.016 Sum_probs=56.2
Q ss_pred cchhhHHHHHHHHhhhc---CCCcEEEEEcchhhcc--cHHHHH-HHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCC
Q 007800 439 GSIGWSVGATLGYAQAA---KDKRVIACIGDGSFQV--TAQEIS-TMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKN 512 (589)
Q Consensus 439 g~mG~~l~~aiGaala~---~~~~vv~i~GDGsf~~--~~~el~-ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~ 512 (589)
..++-++..|.-.-... +.++++++.+||+-.- ...++. .+.+.++.+.+|=+.++.
T Consensus 86 t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~----------------- 148 (183)
T cd01453 86 PSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM----------------- 148 (183)
T ss_pred hhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH-----------------
Confidence 34555555554322111 1356888888876532 233443 334567777777664221
Q ss_pred CChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhh
Q 007800 513 WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT 548 (589)
Q Consensus 513 ~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~ 548 (589)
.-+.++|++-|+ .++.+.+.++|.+.+.++.
T Consensus 149 ~~L~~ia~~tgG-----~~~~~~~~~~l~~~~~~~~ 179 (183)
T cd01453 149 HICKEICKATNG-----TYKVILDETHLKELLLEHV 179 (183)
T ss_pred HHHHHHHHHhCC-----eeEeeCCHHHHHHHHHhcC
Confidence 027889999999 8999999999999998865
No 321
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=71.65 E-value=27 Score=35.21 Aligned_cols=155 Identities=17% Similarity=0.029 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCC--EEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccC-c-eEEEEeCCcchH--
Q 007800 29 LGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGL-- 102 (589)
Q Consensus 29 ~a~~i~~~L~~~GV~--~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~-~v~~~t~GpG~~-- 102 (589)
.-.+|.++|.+.|++ ...-+.|...... ....-......+.| ..|.-+|.|...+.. + .+|++ |=|..
T Consensus 12 i~~~~~~a~~~l~~~p~d~iivsdiGc~~~---~~~~l~~~~~~t~m-G~alPaAiGaklA~Pd~~VVai~--GDG~f~~ 85 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVVSGIGCSAK---TPHYVNVNGFHGLH-GRALPVATGIKLANPHLKVIVVG--GDGDLYG 85 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCcccc---cCCeEecCCccccc-ccHHHHHHHHHHHCCCCcEEEEe--CchHHHh
Confidence 346778888888773 1222222222211 00000012222333 456668888777654 4 44443 44442
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCccccCCccce------ee----ecCC---CChHHHHHhhhcceeEEEE-eCChhhH
Q 007800 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL------HH----TIGL---PDFTQELRCFQAITCSQAV-VNNLGDA 168 (589)
Q Consensus 103 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~------~~----~~~~---~~~~~~~~~~~~~tk~~~~-v~~~~~~ 168 (589)
-.++.+..|...++|+++|.-+.....+-.++.. .. ..+. ....+...+...+..-+.. ..+++++
T Consensus 86 mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~~eL 165 (287)
T TIGR02177 86 IGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDVAHL 165 (287)
T ss_pred ccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCHHHH
Confidence 4467799999999999999865433211111000 00 0010 0012345666666433333 4566666
Q ss_pred HHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 169 HELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 169 ~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
.+.|++| ...+||++|++...
T Consensus 166 ~~ai~~A----l~~~GpslIeV~~p 186 (287)
T TIGR02177 166 KEIIKEA----INHKGYALVDILQP 186 (287)
T ss_pred HHHHHHH----HhCCCCEEEEEeCC
Confidence 5555554 55689999998643
No 322
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=70.72 E-value=47 Score=33.68 Aligned_cols=123 Identities=15% Similarity=0.021 Sum_probs=64.0
Q ss_pred CCeEEecCchhHHHHhhhhhhhc---c--CceEEEEeCCcchH--HHHHHHHHhhhcCCcEEEEeCCCCccccCCcccee
Q 007800 65 ELNLVGCCNELNAGYAADGYARS---R--GVGACVVTFTVGGL--SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH 137 (589)
Q Consensus 65 ~i~~v~~~hE~~A~~~A~gyar~---t--g~~v~~~t~GpG~~--n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~ 137 (589)
++.++.+.++.+++.++ |.+++ . +...+++..|=|.+ ..+.++..|...+.|+++|.=+..... .++-+.+
T Consensus 63 ~~~~i~~~~G~~~~~A~-G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~-~TGgQ~S 140 (300)
T PRK11864 63 TVPVLHTAFAATAAVAS-GIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYM-NTGIQRS 140 (300)
T ss_pred cccceeehhhChHHHHH-HHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeee-cCCCCCC
Confidence 56777888877765543 33332 2 22333435555543 245889999999999999986633221 1110000
Q ss_pred e-----------ecCCC-ChHHHHHhhhcc-eeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 138 H-----------TIGLP-DFTQELRCFQAI-TCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 138 ~-----------~~~~~-~~~~~~~~~~~~-tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
- ..|.. .-.|...++..+ ..|..++.. .+ +..+.++++.|.+.+||.+|.+-
T Consensus 141 ~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~-~~-~~~~~~~i~~A~~~~Gps~I~~~ 205 (300)
T PRK11864 141 SSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASI-AY-PEDFIRKLKKAKEIRGFKFIHLL 205 (300)
T ss_pred CCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeC-CC-HHHHHHHHHHHHhCCCCEEEEEe
Confidence 0 01100 112334444432 235444432 11 23345566666667899999864
No 323
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=70.71 E-value=17 Score=38.07 Aligned_cols=111 Identities=11% Similarity=0.022 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcC--CCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHH
Q 007800 221 LEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~--rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~ 298 (589)
-+++++.+++.|.+.+ +-.+++|.. ...+..-.+++|++.+|...+.+-......+..+.. .|.+ .. . ....
T Consensus 71 W~eAl~~ia~~l~~~~~~~i~~i~g~~-~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~-~~~~--~~-~-~sl~ 144 (366)
T cd02774 71 WKTAFKFLNKFILLKKFSKLNFIIGSK-IDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLD-LENY--LF-N-NSLK 144 (366)
T ss_pred HHHHHHHHHHHHhhcCcccEEEEECCC-CCHHHHHHHHHHHHHhCCCceecccccccccccccc-ccCC--cc-C-CCHH
Confidence 4567788888776543 345555554 344677789999999998877643221100111111 1222 11 1 1223
Q ss_pred HhhhcCEEEEeCCCcCCccccccccc-----CCCCceEEEcCCc
Q 007800 299 IVESADAYVFVGPIFNDYSSVGYSLL-----IKKEKAIIVQPHR 337 (589)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~-----~~~~~~i~id~d~ 337 (589)
-+.++|+||++|+.+.+....-+..+ ..+.+++.|++..
T Consensus 145 die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 145 NLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred HHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 46799999999987654433211111 2346788888765
No 324
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=70.48 E-value=11 Score=40.31 Aligned_cols=112 Identities=14% Similarity=0.025 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcCC-----CEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCc-eeeecCCCCCH
Q 007800 221 LEAAVEATADFLNKAVK-----PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF-IGTYWGAVSSS 294 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~r-----pviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~-~G~~~g~~~~~ 294 (589)
-+++++.+++.|++.++ -+.+.+++....+....+.+|++.+|.|.+......... .+... .+. +..+.
T Consensus 71 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~--~~~~~- 145 (414)
T cd02772 71 WETALEYVAEGLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQSDF--RDDAKASGA--PWLGM- 145 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEEecCCCCcHHHHHHHHHHHHhCCCCccCccccCcc--chhhhhccC--CCCCC-
Confidence 45678888888776422 244333332223455678899999998876432111000 00000 010 11111
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc----CCCCceEEEcCCce
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRV 338 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~ 338 (589)
...-+.++|+||++|+.+.+.....+..+ .++.++|.||+-..
T Consensus 146 -~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~ 192 (414)
T cd02772 146 -PIAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADD 192 (414)
T ss_pred -cHHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccc
Confidence 22346889999999987644332111111 23568999998543
No 325
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=69.84 E-value=65 Score=32.73 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=51.3
Q ss_pred cCCCEEEecCCcchHHHHHhhh-cCC-CCeEEecCchhHHHHhhhhhhhcc---Cc-eEEEEeCCcch--HHHHHHHHHh
Q 007800 40 IGAKDVFSVPGDFNLTLLDHLI-AEP-ELNLVGCCNELNAGYAADGYARSR---GV-GACVVTFTVGG--LSVLNAIAGA 111 (589)
Q Consensus 40 ~GV~~vfg~pG~~~~~l~~al~-~~~-~i~~v~~~hE~~A~~~A~gyar~t---g~-~v~~~t~GpG~--~n~~~~l~~A 111 (589)
.|=+.|+.. +.....+..... ..+ .+.++.+.+|.+++++ .|.+++. ++ .-+++..|=|. ...++++..|
T Consensus 37 ~g~~~vi~~-~iGC~s~~~~~~p~~~~~~~~~~~~fg~~~a~a-~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a 114 (299)
T PRK11865 37 LGKNTVIVV-ATGCLEVITTPYPETAWNVPWIHVAFENAAAVA-SGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGA 114 (299)
T ss_pred cCCCEEEEe-CCCcccccCccCcCCccccccchhhhcchHHHH-HHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHH
Confidence 354555543 555566654332 112 5678888888877654 3444331 22 23333445443 3457899999
Q ss_pred hhcCCcEEEEeCCCCc
Q 007800 112 YSENLPVICIVGGPNS 127 (589)
Q Consensus 112 ~~~~~PllvI~g~~~~ 127 (589)
...+.++++|.=|...
T Consensus 115 ~~r~~ni~~ivlDNe~ 130 (299)
T PRK11865 115 MERGHNILYLMYDNEA 130 (299)
T ss_pred HHcCCCeEEEEECCcc
Confidence 9999999999876444
No 326
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=69.48 E-value=32 Score=35.46 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=54.8
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcc-cHHHHHHHH-HhC------CCeEEEEEeCCchhhhhhhcCCCCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQV-TAQEISTMI-RCG------QRSIIFLINNGGYTIEVEIHDGPYNVIKNWD 514 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~-~~~el~ta~-~~~------l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d 514 (589)
..++.|.|+|++- .+|++....- .|++ .+.-|.+-+ ..+ +|+.+++...++.+.. .+.. ++-.
T Consensus 62 ~~vg~AaGlA~~G-~~pvv~~~~~-~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~----~G~t---Hs~~ 132 (327)
T CHL00144 62 SFTGMAIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQ----LGAE---HSQR 132 (327)
T ss_pred HHHHHHHHHHHCC-CEEEEEeehh-hHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCC----CCcc---cccc
Confidence 5678888888862 3444433331 2222 233343332 221 3443444433321110 1111 2235
Q ss_pred hHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEE
Q 007800 515 YTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 559 (589)
Q Consensus 515 ~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vie 559 (589)
++.+.+.+-. ++.+...++.|++..++.+++ .++|++|-
T Consensus 133 ~ea~~~~iPg----l~V~~Psd~~d~~~~l~~a~~--~~~Pv~ir 171 (327)
T CHL00144 133 LESYFQSVPG----LQIVACSTPYNAKGLLKSAIR--SNNPVIFF 171 (327)
T ss_pred HHHHHhcCCC----CEEEEeCCHHHHHHHHHHHHh--CCCcEEEE
Confidence 5566665522 266667899999999999986 78998884
No 327
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=69.43 E-value=46 Score=34.30 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=55.9
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcc-cHHHHH-HHHHhC------CCeEEEEEeC-CchhhhhhhcCCCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQV-TAQEIS-TMIRCG------QRSIIFLINN-GGYTIEVEIHDGPYNVIKNW 513 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~-~~~el~-ta~~~~------l~v~ivv~nN-~~~~~~~~~~~~~~~~~~~~ 513 (589)
..++.|.|+|++ ..+|++++.. ..|++ ...-|. .+.+.+ +|+.+++... +.++. .+.. ++-
T Consensus 62 ~~vg~AaGlA~~-G~~Piv~~~~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~-----~G~t---H~~ 131 (327)
T PRK09212 62 GFAGLAVGAAFA-GLRPIVEFMT-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAAR-----VAAQ---HSQ 131 (327)
T ss_pred HHHHHHHHHHHc-CCeeEEEeeh-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCC-----CCcc---ccc
Confidence 567888888885 3466665443 12332 222222 223332 4444444433 32221 1111 223
Q ss_pred ChHHHHHHc-cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEE
Q 007800 514 DYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 558 (589)
Q Consensus 514 d~~~la~a~-G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vi 558 (589)
.++.+.+++ |. ....-.|+.|++.+++.++. .++|++|
T Consensus 132 ~~ea~~r~iP~l-----~V~~P~d~~e~~~~l~~a~~--~~~Pv~i 170 (327)
T PRK09212 132 CYAAWYSHIPGL-----KVVAPYFAADCKGLLKTAIR--DPNPVIF 170 (327)
T ss_pred CHHHHHhcCCCC-----EEEeeCCHHHHHHHHHHHHh--CCCcEEE
Confidence 455666666 44 66777899999999999996 6889998
No 328
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=69.24 E-value=3.8 Score=42.88 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhcC-----CCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCc-eeeecCCCCCH
Q 007800 221 LEAAVEATADFLNKAV-----KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF-IGTYWGAVSSS 294 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~-----rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~-~G~~~g~~~~~ 294 (589)
-+++++.+++.|++.+ ..+.+.++..........+.+|...++.+.+.........+....+. +|. +....
T Consensus 73 WdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~- 149 (374)
T cd00368 73 WDEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGG--GAPTN- 149 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCC--CCCCC-
Confidence 4677888888887753 45555444333333444556677888877655332211111100000 011 11111
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (589)
.. .-+.+||+||++|+.+.......... ..++.++|.||+.....
T Consensus 150 ~~-~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t 198 (374)
T cd00368 150 TL-ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTET 198 (374)
T ss_pred CH-HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcc
Confidence 12 23469999999998764332211111 12467899999876543
No 329
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=68.98 E-value=14 Score=43.97 Aligned_cols=116 Identities=13% Similarity=-0.043 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHh------cCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCH
Q 007800 221 LEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (589)
Q Consensus 221 ~~~~i~~~~~~L~~------a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~ 294 (589)
-+++++.+++.|.+ .+...++.|.+...........+|+..+|.+........+.....++..+|.. ..+
T Consensus 141 WdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~--~~~-- 216 (912)
T TIGR03479 141 WDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFGKA--HDS-- 216 (912)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHHHHHcCCCccccccccCCCCCcccceeccC--ccC--
Confidence 45677777776654 22323333444332222344568888888764322211122223333333431 011
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (589)
....-+.+||+||++|+.........+.. ..++.|+|.||++....
T Consensus 217 ~~~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~t 266 (912)
T TIGR03479 217 ATSDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPS 266 (912)
T ss_pred CchhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChh
Confidence 12223579999999998765443222221 12467999999987644
No 330
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=67.57 E-value=15 Score=41.42 Aligned_cols=114 Identities=14% Similarity=0.064 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHH
Q 007800 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (589)
Q Consensus 220 ~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~ 299 (589)
.-+++++.+++.|++.++..++.|..... +....+.+|++.+|.+-+.......... ..+...+. ..+. ...-
T Consensus 287 sWdeAl~~ia~kL~~i~~va~~~~~~~~~-e~~~~~~~~~~~lGt~~~~~~~~~~~~~-~~~~~~~~---~~g~--~~~d 359 (603)
T TIGR01973 287 SWAEALAIAAEKLKASSRIGGIAGPRSSL-EELFALKKLVRKLGSENFDLRIRNYEFE-SADLRANY---LFNT--TLAD 359 (603)
T ss_pred CHHHHHHHHHHHHhccCcEEEEeCCCCCH-HHHHHHHHHHHHhCCCcccccccccccc-cchhhccc---ccCC--CHHH
Confidence 34678888889888876666665654432 3456788999998866443222110000 01111111 1111 2233
Q ss_pred hhhcCEEEEeCCCcCCccccccccc----CCC-CceEEEcCCceee
Q 007800 300 VESADAYVFVGPIFNDYSSVGYSLL----IKK-EKAIIVQPHRVTV 340 (589)
Q Consensus 300 l~~aD~vl~lG~~~~~~~~~~~~~~----~~~-~~~i~id~d~~~~ 340 (589)
+.++|+||++|+.+.+.....+..+ .++ .|+|.||+.....
T Consensus 360 i~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~t 405 (603)
T TIGR01973 360 IEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNL 405 (603)
T ss_pred HHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccc
Confidence 5789999999987655432222211 123 6899999866544
No 331
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=67.27 E-value=14 Score=39.16 Aligned_cols=48 Identities=23% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEc
Q 007800 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt 269 (589)
-....+++..|++-.+-+.++.-...|..|.++|+.|+++.++||+..
T Consensus 114 TTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 114 TTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred HhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 345677888888877777777888999999999999999999999964
No 332
>PRK13936 phosphoheptose isomerase; Provisional
Probab=67.17 E-value=46 Score=31.48 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCcchHH--HHHhhhc-----CCCCeEEecCchhHHHHh---hhhh--------hh-cc
Q 007800 28 TLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIA-----EPELNLVGCCNELNAGYA---ADGY--------AR-SR 88 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vfg~pG~~~~~--l~~al~~-----~~~i~~v~~~hE~~A~~~---A~gy--------ar-~t 88 (589)
..++.+++.+.+.|.=++||+-++.... +...+.. .++++.+....+...... -.++ +. .+
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 5678889999999999999997665433 3333431 246666554322222100 0111 11 22
Q ss_pred Cc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCc
Q 007800 89 GV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNS 127 (589)
Q Consensus 89 g~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~ 127 (589)
.. .+++.+.....-+.+..+..|+..++|+|.||+....
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s 150 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGG 150 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 33 4444444434556888899999999999999986433
No 333
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=66.06 E-value=5.8 Score=38.47 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=31.5
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc--CCCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~ 340 (589)
.+.+.+.+||++|++|+++.-.....+-.. ..+.++|.||.++...
T Consensus 164 ~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~ 211 (222)
T cd01413 164 EAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPF 211 (222)
T ss_pred HHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCC
Confidence 455677899999999999765544332222 2456789999887643
No 334
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=64.82 E-value=23 Score=36.07 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=68.2
Q ss_pred EEEeCcccchhhHHHHHHHHHHHhCCceEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCc
Q 007800 239 VLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY 316 (589)
Q Consensus 239 viv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~--~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~ 316 (589)
++-.|+|....+..+.+.+||+.+|+-|-.|-. ..|.+|.++ .+|.. |.. =.+|+.|++|-+=. .
T Consensus 198 VVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d~--QVGqT-Gk~---------V~P~LYIA~GISGA-i 264 (313)
T COG2025 198 VVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPNDR--QVGQT-GKT---------VAPKLYIALGISGA-I 264 (313)
T ss_pred EEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCccc--eecCC-CcE---------ecccEEEEEecccH-H
Confidence 445666666666777899999999998877553 246666654 45552 321 36899999994311 1
Q ss_pred ccccccccCCCCceEEEcCCceeec-CCCcccc-ccHHHHHHHHHHHhhc
Q 007800 317 SSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLRK 364 (589)
Q Consensus 317 ~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~-~~~~~~l~~L~~~l~~ 364 (589)
.+ ..-......+|-||.|+...= +..-|+- .|+..++++|.+.++.
T Consensus 265 QH--laGm~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~~ 312 (313)
T COG2025 265 QH--LAGMKDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALKK 312 (313)
T ss_pred HH--HhhcccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHhc
Confidence 11 011112335778888886421 0112332 3889999999998864
No 335
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=64.17 E-value=62 Score=33.79 Aligned_cols=99 Identities=11% Similarity=0.135 Sum_probs=56.0
Q ss_pred hHHHHHHHHhhhcCCCcEEEE-Ecchhhccc-HHHHHH-HHHh------CCCeEEEEEeCCc-hhhhhhhcCCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIAC-IGDGSFQVT-AQEIST-MIRC------GQRSIIFLINNGG-YTIEVEIHDGPYNVIKN 512 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i-~GDGsf~~~-~~el~t-a~~~------~l~v~ivv~nN~~-~~~~~~~~~~~~~~~~~ 512 (589)
..++.|.|+|++ ..+|++.+ .. .|++- +..+.+ +... ++|+.+|+...++ ++. ++.. +.
T Consensus 93 ~~vg~AaGlA~~-G~~Pvv~~~fa--~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~-----~G~t---Hs 161 (355)
T PTZ00182 93 GFAGFAIGAAMN-GLRPIAEFMFA--DFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGH-----GGAY---HS 161 (355)
T ss_pred HHHHHHHHHHhC-CCEEEEEechh--hHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCC-----CCCc---cc
Confidence 466778888886 24455543 23 44442 333333 2332 2455454444332 221 1111 22
Q ss_pred CChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEE
Q 007800 513 WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 558 (589)
Q Consensus 513 ~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vi 558 (589)
-.++.+.+++-. +......++.|+..+++.+++ .++|++|
T Consensus 162 ~~~ea~lr~iPn----~~V~~Psd~~e~~~~l~~a~~--~~~P~~i 201 (355)
T PTZ00182 162 QSFEAYFAHVPG----LKVVAPSDPEDAKGLLKAAIR--DPNPVVF 201 (355)
T ss_pred chHHHHHhcCCC----CEEEeeCCHHHHHHHHHHHHh--CCCcEEE
Confidence 245566666622 267777899999999999996 6899987
No 336
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=63.68 E-value=29 Score=31.08 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=51.7
Q ss_pred cchhhHHHHHHHHhhhcC-CCcEEEEEcchhhcccHHHHH-HHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChH
Q 007800 439 GSIGWSVGATLGYAQAAK-DKRVIACIGDGSFQVTAQEIS-TMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYT 516 (589)
Q Consensus 439 g~mG~~l~~aiGaala~~-~~~vv~i~GDGsf~~~~~el~-ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~ 516 (589)
..++.++-.|.-.-...+ .++.|+++.||.-.-...+.. .+.+.++++.+|-+....-. .-.+.
T Consensus 80 t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~--------------~~~l~ 145 (172)
T PF13519_consen 80 TNLYDALQEAAKMLASSDNRRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSDA--------------NEFLQ 145 (172)
T ss_dssp --HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-E--------------HHHHH
T ss_pred CcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCccH--------------HHHHH
Confidence 334445544443322222 567999999997665433333 33335555555544433211 11478
Q ss_pred HHHHHccCCCCCccEEEe-CCHHHHHHHHHH
Q 007800 517 GLVNAIHNGEGKCWTAKV-RSEDELTEAMKT 546 (589)
Q Consensus 517 ~la~a~G~~~~~~~~~~v-~~~~~l~~al~~ 546 (589)
.+|+.-|+ .++.+ .+.++|.++|++
T Consensus 146 ~la~~tgG-----~~~~~~~~~~~l~~~~~~ 171 (172)
T PF13519_consen 146 RLAEATGG-----RYFHVDNDPEDLDDAFQQ 171 (172)
T ss_dssp HHHHHTEE-----EEEEE-SSSHHHHHHHHH
T ss_pred HHHHhcCC-----EEEEecCCHHHHHHHHhc
Confidence 89999998 89998 588999999875
No 337
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=63.42 E-value=12 Score=42.74 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHh------cCCCEEEeCcccchhhHHHHHHHHHHH-hCCceEEccCCccCCCC--CCCCceeeecCCC
Q 007800 221 LEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPE--HHPHFIGTYWGAV 291 (589)
Q Consensus 221 ~~~~i~~~~~~L~~------a~rpviv~G~g~~~~~~~~~l~~lae~-~~~Pv~tt~~~~g~~~~--~~pl~~G~~~g~~ 291 (589)
-+++++.+++.|++ .++..++.|.+... +....+.+|++. +|.+-+.+.......+. .+...+|.. ..
T Consensus 70 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~-e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~--~~ 146 (671)
T TIGR01591 70 WDEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTN-EENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIG--AM 146 (671)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccc-HHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCC--CC
Confidence 45677788887773 33556666655442 345577889986 88775543211110000 111112221 11
Q ss_pred CCHHHHHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCcee
Q 007800 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (589)
Q Consensus 292 ~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~ 339 (589)
+. . .+-+.+||+||++|+.+.......+.. ..++.++|.||+....
T Consensus 147 ~~-~-~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ 196 (671)
T TIGR01591 147 SN-T-ISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTE 196 (671)
T ss_pred CC-C-HHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCCh
Confidence 11 1 233688999999998764432211111 1246789999986654
No 338
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=63.38 E-value=7.5 Score=38.91 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHhhhcCEEEEeCCCcCCccccccccc--CCCCceEEEcCCceeecC--CCccccccHHHHHHHHHHHhhc
Q 007800 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGN--GPSLGWVFMADFLSALAKKLRK 364 (589)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~--~~~~~~~~~~~~l~~L~~~l~~ 364 (589)
..+.+.+++||++|++|+++.-..-..+-.. ..+.++|.||+++..+.. .......++..++. +.+.++.
T Consensus 191 ~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~-~~~~~~~ 264 (271)
T PTZ00409 191 KQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISDYHVRAKFSELAQ-ISDILKG 264 (271)
T ss_pred HHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccccEEEECcHHHHHH-HHHHhcc
Confidence 3556678899999999999875554333321 245689999998765420 11222335566654 3344543
No 339
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=63.25 E-value=7.2 Score=38.80 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=32.5
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc--cCCCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~ 340 (589)
.+.+.+.+||++|++|+++.-.....+-. ...+.++|.||.++...
T Consensus 197 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~ 244 (260)
T cd01409 197 TAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRA 244 (260)
T ss_pred HHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCC
Confidence 46677789999999999986554333221 22467899999988654
No 340
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=62.88 E-value=13 Score=41.65 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHhc--CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCC--ccCCCCCCCCceeeecCCCCCHH
Q 007800 220 GLEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG--KGLVPEHHPHFIGTYWGAVSSSF 295 (589)
Q Consensus 220 ~~~~~i~~~~~~L~~a--~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~--~g~~~~~~pl~~G~~~g~~~~~~ 295 (589)
.-+++++.+++.|++. ++.+++.++... .++.-....|+..+|.+-+..... ...-....+..+|. +. +. .
T Consensus 82 SWDEAl~~IA~kL~~~~~~~~~~y~sg~~s-nE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~--~~-~t-~ 156 (574)
T cd02767 82 SWDEAFAEIAARLRALDPDRAAFYTSGRAS-NEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGV--GK-GT-V 156 (574)
T ss_pred cHHHHHHHHHHHHhhhCCCcEEEEecCCCc-cHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCC--CC-CC-C
Confidence 3567888888888875 334444433222 233445778998899765432110 00000001112232 11 11 1
Q ss_pred HHHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCce
Q 007800 296 CGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRV 338 (589)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~ 338 (589)
..+-+.+||+||++|..........+.. ..++.|+|.||+...
T Consensus 157 ~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 157 SLEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred CHHHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 2234578999999998765433222211 124679999998643
No 341
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=61.62 E-value=5.9 Score=40.99 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=64.7
Q ss_pred HHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEc
Q 007800 255 FIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQ 334 (589)
Q Consensus 255 l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id 334 (589)
+.--+-+.++|++-. |.+-.|-||.==...-.-+.....+.++++|+||.+.+.+-+..+++.. +...++++||
T Consensus 296 imy~cvk~~VPfVLA----GSIRDDGPLPdvitDv~~AQ~amR~~~~~a~~vimlaTmLHSIAtGNm~--Ps~v~~~cVD 369 (407)
T TIGR00300 296 VMYECVKNNIPYVLA----GSIRDDGPLPDVITDVVRAQSKMRELLQGADMVLMLSTMLHSIAVGNLL--PSGVKTICVD 369 (407)
T ss_pred hHHHHHhCCCCEEEe----eeccCCCCCCcchhhHHHHHHHHHHHhccCCeehhHHHHHHHHhhcccc--cccceEEEEE
Confidence 344456789998874 3455555553110000112344556678999999999988887776654 3345899999
Q ss_pred CCceeecC---C-C--cccc-ccHHHHHHHHHHHhh
Q 007800 335 PHRVTVGN---G-P--SLGW-VFMADFLSALAKKLR 363 (589)
Q Consensus 335 ~d~~~~~~---~-~--~~~~-~~~~~~l~~L~~~l~ 363 (589)
+++..+.+ + . ..+- .|+.+||..|.+.|.
T Consensus 370 Inp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 370 INPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred CCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 99876531 1 1 1111 278999999987774
No 342
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=61.31 E-value=8.3 Score=36.88 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=31.9
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc--cCCCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~ 340 (589)
.+.+.+.+||++|++|+++.-.....+-. ...+.++|.||.++...
T Consensus 148 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~ 195 (206)
T cd01410 148 GAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPK 195 (206)
T ss_pred HHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCC
Confidence 56667789999999999976554433321 12356789999887644
No 343
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=60.92 E-value=63 Score=33.69 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=43.3
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~ 494 (589)
.++.+|+|++++ +.+++..+-|.+|.+-...|..+.-..+|+++++.+=.
T Consensus 59 aA~~~a~GAs~a--G~Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v~R~ 108 (352)
T PRK07119 59 AAINMVYGAAAT--GKRVMTSSSSPGISLKQEGISYLAGAELPCVIVNIMRG 108 (352)
T ss_pred HHHHHHHHHHhh--CCCEEeecCcchHHHHHHHHHHHHHccCCEEEEEeccC
Confidence 677899999997 67899999999998888888888889999998888743
No 344
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=60.26 E-value=7.7 Score=37.66 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=30.8
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccccC-CCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~ 340 (589)
.+.+.++++|++|++|+++.-.+...+-... ++.++|.||.++..+
T Consensus 164 ~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~ 210 (225)
T cd01411 164 EAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQL 210 (225)
T ss_pred HHHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCC
Confidence 3556678999999999977543332221122 367899999887754
No 345
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=60.07 E-value=84 Score=29.56 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=62.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHh--hh-----cCCCCeEEecCchhHHH-----------Hhhhhhhh-
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LI-----AEPELNLVGCCNELNAG-----------YAADGYAR- 86 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~a--l~-----~~~~i~~v~~~hE~~A~-----------~~A~gyar- 86 (589)
....++.|.+.|.+.|-=++||+-++......-+ +. ...++..+.. .+.... .++.-.+.
T Consensus 30 i~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~ 108 (192)
T PRK00414 30 IQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSRYVEAV 108 (192)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHHHHHHh
Confidence 3466788888888889999999977765433332 21 1246665554 333221 11111111
Q ss_pred ccCceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCc
Q 007800 87 SRGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (589)
Q Consensus 87 ~tg~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 127 (589)
.+..-++++-|..| ..+.+.++..|...++|+|.||+....
T Consensus 109 ~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 109 GREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 22224555566666 457888899999999999999997543
No 346
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=58.10 E-value=68 Score=30.31 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=44.4
Q ss_pred eEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEE-eCChh
Q 007800 91 GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNNLG 166 (589)
Q Consensus 91 ~v~~~t~GpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~-v~~~~ 166 (589)
..+++..|=|.++ ..-++..|.....|+++|.-+....... . +.+....++.+ -|... ..+..
T Consensus 98 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~-------~-----~~~~~~~~~a~-G~~~~~~vdG~ 164 (195)
T cd02007 98 RKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISP-------N-----VGTPGNLFEEL-GFRYIGPVDGH 164 (195)
T ss_pred CeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCC-------C-----CCCHHHHHHhc-CCCccceECCC
Confidence 3344445656553 4466666666699999987553322110 0 01233444432 22221 11222
Q ss_pred hHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 167 DAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 167 ~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
+ .+.+.+|++.|...++|+.|.+-
T Consensus 165 d-~~~l~~a~~~a~~~~~P~~I~~~ 188 (195)
T cd02007 165 N-IEALIKVLKEVKDLKGPVLLHVV 188 (195)
T ss_pred C-HHHHHHHHHHHHhCCCCEEEEEE
Confidence 2 23455666666656799998864
No 347
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=57.98 E-value=78 Score=33.16 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=60.2
Q ss_pred ecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCCh
Q 007800 70 GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145 (589)
Q Consensus 70 ~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~ 145 (589)
...+=-.|+.+|.+. |..|. .++++..|=|++| ..=++--|..-+.|+|+|+=+.... .++-. .+... .
T Consensus 140 vG~~~p~A~G~A~A~-k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~a-ist~~--~~~~~---~ 212 (362)
T PLN02269 140 VGAQVPLGAGLAFAQ-KYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYG-MGTAE--WRAAK---S 212 (362)
T ss_pred hhccccHHHHHHHHH-HHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEe-ccCch--hhhcc---c
Confidence 333334455555553 33344 6777777777655 3444555667789999998653321 11100 00000 0
Q ss_pred HHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 146 ~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
.+...-...+.-....=.++..+.+.+.+|++.+.. .||+.|++-
T Consensus 213 ~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~ 257 (362)
T PLN02269 213 PAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMD 257 (362)
T ss_pred hHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 011110011111222224667788888888888888 899999974
No 348
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=57.96 E-value=17 Score=35.89 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=51.8
Q ss_pred HHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhc-------CCCcEEEEEcchhh
Q 007800 397 FKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAA-------KDKRVIACIGDGSF 469 (589)
Q Consensus 397 ~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~-------~~~~vv~i~GDGsf 469 (589)
+..-++.-..++-|++..|... .... .+....+.-||.+++..+|.++.+ ...|.|++.--|+.
T Consensus 99 L~~a~~~tg~~davvtg~g~i~--G~pv-------v~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGA 169 (294)
T COG0777 99 LEAARKKTGLDDAVVTGEGTIN--GLPV-------VLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGA 169 (294)
T ss_pred HHHHHhhcCCCcceEEEeeEEC--CeEE-------EEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcch
Confidence 3444445555555665555432 1110 222233444666666666665542 36799999999998
Q ss_pred ccc--HHHHHHH----------HHhCCCeEEEEEeCCchhh
Q 007800 470 QVT--AQEISTM----------IRCGQRSIIFLINNGGYTI 498 (589)
Q Consensus 470 ~~~--~~el~ta----------~~~~l~v~ivv~nN~~~~~ 498 (589)
-|. .-.|+-. .+.++|.+.|+-|=-..|+
T Consensus 170 RMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGV 210 (294)
T COG0777 170 RMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 210 (294)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 662 3333221 1349998777776665555
No 349
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=57.17 E-value=18 Score=41.84 Aligned_cols=112 Identities=20% Similarity=0.104 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhc--CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCC--CCCCceeeecCCCCCHHH
Q 007800 221 LEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE--HHPHFIGTYWGAVSSSFC 296 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a--~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~--~~pl~~G~~~g~~~~~~~ 296 (589)
-+++++.+++.|++. ++..++.++.. ..++.-....|+..+|.+-+.+...-.--+. .....+|.. .+. ..
T Consensus 118 WdEAl~~IA~kL~~~~p~~i~~y~sg~~-s~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~---~~t-~~ 192 (743)
T TIGR01701 118 WDDAYQEIAAKLNSLDPKQVAFYTSGRT-SNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIG---KGS-VN 192 (743)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCCc-chHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCC---CCC-CC
Confidence 467888888888875 44445544333 2233445678888888765432110000000 001112221 111 11
Q ss_pred HHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCc
Q 007800 297 GEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHR 337 (589)
Q Consensus 297 ~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~ 337 (589)
.+-+.+||+||++|..........+.. ..++.|+|.||+-.
T Consensus 193 ~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~ 237 (743)
T TIGR01701 193 LEDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLR 237 (743)
T ss_pred HhHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 233578999999998765443222221 12467999999854
No 350
>PRK13938 phosphoheptose isomerase; Provisional
Probab=56.96 E-value=73 Score=30.17 Aligned_cols=100 Identities=19% Similarity=0.158 Sum_probs=59.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHh--hhc-----CCCCeEEecCchhHHHHhhh----hhh----h-----
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LIA-----EPELNLVGCCNELNAGYAAD----GYA----R----- 86 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~a--l~~-----~~~i~~v~~~hE~~A~~~A~----gya----r----- 86 (589)
...++.+++.|++.|-=++||+-++.......+ |.. .+.+..+....+ .+...|. ||. +
T Consensus 32 ~~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~-~~~~~a~~nd~~~~~~~~~~~~~~ 110 (196)
T PRK13938 32 RAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHAN-SSHLTAVANDYDYDTVFARALEGS 110 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCC-hHHHHHhhccccHHHHHHHHHHhc
Confidence 456788899999999999999977654443332 321 123333322222 2222221 121 1
Q ss_pred ccCceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCc
Q 007800 87 SRGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (589)
Q Consensus 87 ~tg~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 127 (589)
.+..-++++-|..| .-+.+.++..|+..+.|+|.||+....
T Consensus 111 ~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 111 ARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 22233444445555 567889999999999999999987544
No 351
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=56.60 E-value=84 Score=31.03 Aligned_cols=91 Identities=18% Similarity=0.105 Sum_probs=48.7
Q ss_pred eCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeC--ChhhHHH
Q 007800 96 TFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NLGDAHE 170 (589)
Q Consensus 96 t~GpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~--~~~~~~~ 170 (589)
..|=|..+ ..-++..|...++|.|++.-+......... .+... ...+...+++.+--...++. +.+++.
T Consensus 133 i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~--~~~~~---~~~~~~~~~~a~G~~~~~v~G~d~~~l~- 206 (255)
T cd02012 133 LLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGP--TDDIL---FTEDLAKKFEAFGWNVIEVDGHDVEEIL- 206 (255)
T ss_pred EECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCc--Hhhcc---CchhHHHHHHHcCCeEEEECCCCHHHHH-
Confidence 34656555 467888888889884444333322211110 00011 12345667777644455666 555554
Q ss_pred HHHHHHHHhHhc-CCcEEEEeCCCCC
Q 007800 171 LIDTAISTALKE-SKPVYISISCNLP 195 (589)
Q Consensus 171 ~l~~A~~~a~~~-~gPV~i~iP~dv~ 195 (589)
+|++.+... .+|+.|.+-...-
T Consensus 207 ---~al~~a~~~~~~P~~I~~~t~kg 229 (255)
T cd02012 207 ---AALEEAKKSKGKPTLIIAKTIKG 229 (255)
T ss_pred ---HHHHHHHHcCCCCEEEEEEeecc
Confidence 445544443 6899999876553
No 352
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=56.55 E-value=23 Score=40.64 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHhc--CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHH
Q 007800 220 GLEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (589)
Q Consensus 220 ~~~~~i~~~~~~L~~a--~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~ 297 (589)
.-+++++.+++.|++. ++..+++|..... +..-.+++|++.+|.+.+.+......+. +...+.| .++. ...
T Consensus 288 SWdEAl~~iA~kL~~~~~~~ia~i~g~~~~~-E~~~~lkkl~~~lGs~nid~~~~~~~~~---~~~~~~~--~~~~-si~ 360 (687)
T PRK09130 288 SWDEAFAAIAAKIKGTPGEKIAAIAGDLADV-ESMFALKDLMQKLGSSNLDCRQDGAKLD---PSLRASY--LFNT-TIA 360 (687)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCCCCH-HHHHHHHHHHHHcCCCccccccchhhhh---hhhhccC--CCCC-CHH
Confidence 3567888888888875 4557777766543 4556889999999988776432110111 1011111 1111 222
Q ss_pred HHhhhcCEEEEeCCCcCCcccccccc----cCCC-CceEEEcCCc
Q 007800 298 EIVESADAYVFVGPIFNDYSSVGYSL----LIKK-EKAIIVQPHR 337 (589)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~-~~~i~id~d~ 337 (589)
-+.++|+||++|+.+.+....-+.. +.++ .+++.||+..
T Consensus 361 -dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~ 404 (687)
T PRK09130 361 -GIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQA 404 (687)
T ss_pred -HHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 3589999999998764433211111 1234 4899998754
No 353
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=56.26 E-value=25 Score=34.26 Aligned_cols=102 Identities=11% Similarity=0.048 Sum_probs=55.1
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHH--HHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTG--LVN 520 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~--la~ 520 (589)
.++.+++|++++ +.+++..+-=.++.+-...|.++.-.++|+++++.+-.+-+- ... ...+... .++
T Consensus 47 ~A~~~~~GAs~a--G~ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~~R~g~~~--------g~~-~~~~q~D~~~~~ 115 (230)
T PF01855_consen 47 AAMEAAIGASAA--GARAMTATSGPGLNLMAEPLYWAAGTELPIVIVVVQRAGPSP--------GLS-TQPEQDDLMAAR 115 (230)
T ss_dssp HHHHHHHHHHHT--T--EEEEEECCHHHHHCCCHHHHHHTT--EEEEEEEB---SS--------SB---SB-SHHHHHTT
T ss_pred HHHHHHHHHHhc--CCceEEeecCCcccccHhHHHHHHHcCCCEEEEEEECCCCCC--------CCc-CcCChhHHHHHH
Confidence 577889999987 566666666666665555678888899999888887554221 000 0111222 222
Q ss_pred HccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEE
Q 007800 521 AIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEV 560 (589)
Q Consensus 521 a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev 560 (589)
-+|. -.....+..|.-+....|+. .+..-|+++-.
T Consensus 116 d~~~-----~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~ 152 (230)
T PF01855_consen 116 DSGW-----IVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLF 152 (230)
T ss_dssp TSS------EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred hcCe-----EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4555 55666777776665555543 33566777644
No 354
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.02 E-value=21 Score=36.45 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
-..+.+++..+.+..+.|+++-..--|+++.++|..++|++|+||+.
T Consensus 153 TTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~ 199 (340)
T COG0552 153 TTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS 199 (340)
T ss_pred HhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc
Confidence 45688889888887777777777788889999999999999999997
No 355
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=55.73 E-value=43 Score=33.51 Aligned_cols=76 Identities=12% Similarity=0.045 Sum_probs=49.4
Q ss_pred HHHHHHhhhcCEEEEeCCCcCCccccccc--ccCCCCceEEEcCCceeecC-CCccccccHHHHHHHHHHHhhcCchhh
Q 007800 294 SFCGEIVESADAYVFVGPIFNDYSSVGYS--LLIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLRKNTTAL 369 (589)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~~~ 369 (589)
..+.+..++||++|.||+++.-...+.|. ....+.|++.||........ .+.....+.+.++..|.+.|.-.-..|
T Consensus 208 ~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y 286 (353)
T KOG1905|consen 208 DRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAY 286 (353)
T ss_pred HHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCCCCcc
Confidence 45677789999999999998766555443 23356688888876553221 122334456788888888876443333
No 356
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=55.54 E-value=21 Score=39.25 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCcccchhhHHHHHHHHHHHhCC-ceEEccCCccCCCC--CCCCceeeecCCC
Q 007800 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGY-PIAIMPSGKGLVPE--HHPHFIGTYWGAV 291 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a------~rpviv~G~g~~~~~~~~~l~~lae~~~~-Pv~tt~~~~g~~~~--~~pl~~G~~~g~~ 291 (589)
-+++++.+++.|++. ++..++.|.+... .....+.+|+...+. +.+.........+. .+...+|. +..
T Consensus 71 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~-e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~--~~~ 147 (512)
T cd02753 71 WDEALSLVASRLKEIKDKYGPDAIAFFGSAKCTN-EENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGS--GAM 147 (512)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc-HHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCC--CCC
Confidence 456788888888753 4456666654432 334567788887765 33321110000000 00111121 011
Q ss_pred CCHHHHHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCceee
Q 007800 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (589)
Q Consensus 292 ~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (589)
+ ....-+.++|+||++|+.+.......+.. ..++.++|.||+.....
T Consensus 148 ~--~~~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~t 198 (512)
T cd02753 148 T--NSIADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTEL 198 (512)
T ss_pred C--CCHHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccc
Confidence 1 11233679999999998764432211111 12456899999876543
No 357
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=54.61 E-value=36 Score=31.53 Aligned_cols=65 Identities=15% Similarity=0.324 Sum_probs=31.2
Q ss_pred HHHHHHHHH--hcCCCEEEeCcccchhh--HHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007800 225 VEATADFLN--KAVKPVLVGGPNIRVAK--AQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (589)
Q Consensus 225 i~~~~~~L~--~a~rpviv~G~g~~~~~--~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l 300 (589)
++++.+.+. ..++|++++-......+ ..+++++..+.-+-|++- .+|+ |+.-..+++
T Consensus 90 le~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~lr~~l~~~~~P~Ll--------------lFGT-----GwGL~~ev~ 150 (185)
T PF09936_consen 90 LEEAIEDIEEEEGKRPLLVATSARKYPNTISYAELRRMLEEEDRPVLL--------------LFGT-----GWGLAPEVM 150 (185)
T ss_dssp HHHHHHHHHHHHSS--EEEE--SS--SS-B-HHHHHHHHHH--S-EEE--------------EE-------TT---HHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHHHHHHHhccCCeEEE--------------EecC-----CCCCCHHHH
Confidence 344444443 37899988776553333 467888887777777763 5565 223467888
Q ss_pred hhcCEEEE
Q 007800 301 ESADAYVF 308 (589)
Q Consensus 301 ~~aD~vl~ 308 (589)
+.||.+|-
T Consensus 151 ~~~D~iLe 158 (185)
T PF09936_consen 151 EQCDYILE 158 (185)
T ss_dssp TT-SEEB-
T ss_pred HhcCeeEc
Confidence 99997653
No 358
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=54.48 E-value=95 Score=32.72 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=39.6
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCc
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGG 495 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~ 495 (589)
.++.+++|++.+ +.+++..+-=+||.+-...+..++-..+|+++++.+..+
T Consensus 59 aA~~~a~GAs~a--G~Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~~R~g 109 (376)
T PRK08659 59 ASMAAVIGASWA--GAKAMTATSGPGFSLMQENIGYAAMTETPCVIVNVQRGG 109 (376)
T ss_pred HHHHHHHhHHhh--CCCeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 678899999987 567777766666666566676777778999999998775
No 359
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=54.46 E-value=28 Score=28.73 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=28.3
Q ss_pred cCCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 235 AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 235 a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
.++.++++|.|...+-....+++++++.|+++-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~ 35 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVK 35 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEE
Confidence 467889999999887777899999999999864
No 360
>PRK09939 putative oxidoreductase; Provisional
Probab=54.26 E-value=13 Score=42.95 Aligned_cols=114 Identities=15% Similarity=0.081 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHhcCCC--EEEeCcccchhhHHHHHHHHHHHhCCceEEccC--CccCCCCCCCCceeeecCCCCCHH
Q 007800 220 GLEAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSF 295 (589)
Q Consensus 220 ~~~~~i~~~~~~L~~a~rp--viv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~--~~g~~~~~~pl~~G~~~g~~~~~~ 295 (589)
.-+++++.+++.|++.+.| +.+.+++....++.-.+..|+..+|-+-+.+.. ....-.......+|. | .+.-.
T Consensus 126 SWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s~~C~~~~~~~l~~~~G~--g-~~t~~ 202 (759)
T PRK09939 126 SWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGV--G-KGTVL 202 (759)
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCCCCCchHHHHHHHHhcCC--C-CCCCC
Confidence 3567888888888876555 444443333223344667888888866552211 000000000111222 1 11112
Q ss_pred HHHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCc
Q 007800 296 CGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHR 337 (589)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~ 337 (589)
..+ +.+||+||++|+...+.....+.. ..++.++|.||+-.
T Consensus 203 l~D-i~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~ 247 (759)
T PRK09939 203 LED-FEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQ 247 (759)
T ss_pred HHH-HhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 233 589999999998764432211111 12467899999844
No 361
>PRK13937 phosphoheptose isomerase; Provisional
Probab=54.14 E-value=98 Score=28.96 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHH--Hhhh-----cCCCCeEEecC-chhHHHHhh--hhh---------hhc
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLL--DHLI-----AEPELNLVGCC-NELNAGYAA--DGY---------ARS 87 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~--~al~-----~~~~i~~v~~~-hE~~A~~~A--~gy---------ar~ 87 (589)
-..++.+++.|++.+-=++||+=++...... ..+. ...++..+... +.......+ .|| +..
T Consensus 25 ~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (188)
T PRK13937 25 AKVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALG 104 (188)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhC
Confidence 4578999999999999999999555433221 1121 12466666543 222211111 111 122
Q ss_pred cCceEEEEeCCcch-HHHHHHHHHhhhcCCcEEEEeCCCCcc
Q 007800 88 RGVGACVVTFTVGG-LSVLNAIAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 88 tg~~v~~~t~GpG~-~n~~~~l~~A~~~~~PllvI~g~~~~~ 128 (589)
+..-++++-|.+|- -+.+.++..|...++|+|.||+.....
T Consensus 105 ~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 105 RPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 33345555556664 467788888999999999999865443
No 362
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=53.92 E-value=4.2e+02 Score=31.34 Aligned_cols=178 Identities=14% Similarity=0.021 Sum_probs=93.0
Q ss_pred CCCeEEecCchhHHHH--hhhhhhhcc-Cc--eEEEEeCCc-chHHHHHHHH-HhhhcCCcEEEEeCCCCccccCCccce
Q 007800 64 PELNLVGCCNELNAGY--AADGYARSR-GV--GACVVTFTV-GGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRIL 136 (589)
Q Consensus 64 ~~i~~v~~~hE~~A~~--~A~gyar~t-g~--~v~~~t~Gp-G~~n~~~~l~-~A~~~~~PllvI~g~~~~~~~~~~~~~ 136 (589)
++=-+-.-..|+++.. +|.|.+..+ |+ -.+.++..+ |+.-+.--+- .+-+...++++++........+-+ ..
T Consensus 564 PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG-~q 642 (891)
T PRK09405 564 DGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEG-LQ 642 (891)
T ss_pred CCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCc-cc
Confidence 4444666789999888 888876653 44 334444443 2222222121 233445666666544333322222 12
Q ss_pred eeecCCCChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCC--cEEEEeCCCCCCCCCCCCCCCCCCccCCC
Q 007800 137 HHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESK--PVYISISCNLPGIPHPTFARDPVPFFLAP 213 (589)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~g--PV~i~iP~dv~~~~~~~~~~~~~~~~~~~ 213 (589)
| ..+ .+ ..+++.+-. -.+.+.++.++..+++.+++.+....+ |.||.+. ..... .+. .++....
T Consensus 643 H-qdg----~s-~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~-ne~~~-~~~-~pe~~~~---- 709 (891)
T PRK09405 643 H-EDG----HS-HILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVM-NENYH-QPA-MPEGAEE---- 709 (891)
T ss_pred C-Cch----hh-HHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeC-CCCCC-CCC-CCccccc----
Confidence 2 222 12 235665443 355677888999999999987765444 8889986 11100 000 0000000
Q ss_pred CCCChhhHHHHHHHHHHHHHhcC-----CCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 214 KVSNQLGLEAAVEATADFLNKAV-----KPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 214 ~~~~~~~~~~~i~~~~~~L~~a~-----rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
.+-+....|++.+ .-|.|+|.|.-...+.++...|++..|+-
T Consensus 710 ----------~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~ 756 (891)
T PRK09405 710 ----------GILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVA 756 (891)
T ss_pred ----------ccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCC
Confidence 1111111122222 14888888887777888888888766654
No 363
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=53.43 E-value=75 Score=31.51 Aligned_cols=102 Identities=19% Similarity=0.011 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCC-------CCeEEecCchhHHH-------------Hhhhhhhh
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAG-------------YAADGYAR 86 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~-------~i~~v~~~hE~~A~-------------~~A~gyar 86 (589)
-...+.+++.|++.|-=++||.=++....++|+....+ .+..+..-.+.+.. ....-...
T Consensus 36 ~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~ 115 (257)
T cd05007 36 ARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAIN 115 (257)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcC
Confidence 35678899999998887888887777777777654321 23333333322111 11111111
Q ss_pred ccCceEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCcc
Q 007800 87 SRGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 87 ~tg~~v~~~t~GpG~~-n~~~~l~~A~~~~~PllvI~g~~~~~ 128 (589)
.+..-+++.-|..|-+ ..+.++..|...+.|++.||+.....
T Consensus 116 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 116 LTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 2334344555555644 57788888999999999999876544
No 364
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=53.14 E-value=61 Score=37.81 Aligned_cols=113 Identities=15% Similarity=0.025 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCH
Q 007800 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a------~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~ 294 (589)
.+++++.+++.|++. +...++.+... ..+....+.+|++.+|.+.+.......... ......|. +..+.
T Consensus 289 WdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~~-t~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~-~~~~~~g~--~~~~~- 363 (776)
T PRK09129 289 WETALEYVAEGLKGIIEDHGADQIGALASPHS-TLEELYLLQKLARGLGSGNIDHRLRQQDFR-DDAAAPGA--PWLGM- 363 (776)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCC-CHHHHHHHHHHHHHhCCCccccccCCcccc-chhhhhcc--cccCC-
Confidence 566788888877753 33445545443 233456788999999987654211110000 00000111 11121
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc----CCCCceEEEcCCcee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVT 339 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~ 339 (589)
...-+.++|+||++|+.+.+.....+..+ .++.++|.||+-...
T Consensus 364 -~~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~ 411 (776)
T PRK09129 364 -PIAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDD 411 (776)
T ss_pred -CHHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCccc
Confidence 23345789999999987654432211111 245689999985543
No 365
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=52.74 E-value=87 Score=33.04 Aligned_cols=102 Identities=16% Similarity=0.276 Sum_probs=64.5
Q ss_pred HHHHHhhhcCCCcEEEEE--cchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC-CCCCChHHHHHHcc
Q 007800 447 ATLGYAQAAKDKRVIACI--GDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV-IKNWDYTGLVNAIH 523 (589)
Q Consensus 447 ~aiGaala~~~~~vv~i~--GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~-~~~~d~~~la~a~G 523 (589)
+|-|.+.+. ++|-||++ |-|+-. -..-|+.|..-++|++++-- +.- ...+ .++ +...|...+-++|-
T Consensus 144 aAegYaR~s-gKPGvvlvTSGPGATN-vvtp~ADAlaDg~PlVvftG--QVp--tsaI----GtDAFQEadiVgisRScT 213 (675)
T KOG4166|consen 144 AAEGYARSS-GKPGVVLVTSGPGATN-VVTPLADALADGVPLVVFTG--QVP--TSAI----GTDAFQEADIVGISRSCT 213 (675)
T ss_pred hhhhhhhhc-CCCcEEEEecCCCccc-ccchhhHHhhcCCcEEEEec--ccc--hhhc----ccchhccCCeeeeeeccc
Confidence 455666653 55655554 444433 34567777778999766531 110 0011 111 24457777888886
Q ss_pred CCCCCccEEEeCCHHHHHHHHHHhhh-c--CCCCeEEEEEEcC
Q 007800 524 NGEGKCWTAKVRSEDELTEAMKTATG-E--QKDSLCFIEVFVH 563 (589)
Q Consensus 524 ~~~~~~~~~~v~~~~~l~~al~~a~~-~--~~~gp~viev~~~ 563 (589)
- +.+.|.|.+||..-+++|++ . -+.||+||++.-|
T Consensus 214 K-----wNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDlPKD 251 (675)
T KOG4166|consen 214 K-----WNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDLPKD 251 (675)
T ss_pred e-----eheeeecHHHhhHHHHHHhhhhccCCCCCeEeeCcHH
Confidence 5 77889999999999999987 2 3468999988755
No 366
>PRK13761 hypothetical protein; Provisional
Probab=52.61 E-value=35 Score=32.74 Aligned_cols=47 Identities=26% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
.....+.++.+|.-|++|||=+-+.... -..+++.+|++.+++++=.
T Consensus 53 A~~A~raAaA~LLlA~~PVISVNGN~AA-L~p~eiveLa~~~~A~iEV 99 (248)
T PRK13761 53 ALEAERAAAALLLLAKHPVISVNGNTAA-LVPEEIVELAEALNAKLEV 99 (248)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEcchHHh-hChHHHHHHHHHhCCCEEE
Confidence 4567788888899999999988776653 3678999999999999754
No 367
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=52.49 E-value=43 Score=33.35 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=52.2
Q ss_pred eEEEEeCCcchHHHHHHHHH----hhhcCCc---EEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcce--eEEEE
Q 007800 91 GACVVTFTVGGLSVLNAIAG----AYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT--CSQAV 161 (589)
Q Consensus 91 ~v~~~t~GpG~~n~~~~l~~----A~~~~~P---llvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--k~~~~ 161 (589)
.++++..|=|+...-+.+.| |..-+.| +|+|.-...-. ..+.. .+... .....+..+.+- -....
T Consensus 141 ~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g-~sT~~--~~~~~---~~~~~~~a~~~gip~~~Vd 214 (265)
T cd02016 141 VLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIG-FTTDP--RDSRS---SPYCTDVAKMIGAPIFHVN 214 (265)
T ss_pred eEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEecH--HHhcc---cccHHHHHeecCCCEEEEc
Confidence 67777777666321233333 4455666 88887542221 11100 00000 001122333332 23334
Q ss_pred eCChhhHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 162 VNNLGDAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 162 v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
=.+++.+.+.+++|++.+.+..||+.|++-
T Consensus 215 G~D~~aV~~a~~~A~~~~r~g~gp~lIe~~ 244 (265)
T cd02016 215 GDDPEAVVRATRLALEYRQKFKKDVVIDLV 244 (265)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 467888999999999999999999999984
No 368
>PRK13685 hypothetical protein; Provisional
Probab=52.29 E-value=91 Score=32.07 Aligned_cols=83 Identities=16% Similarity=0.058 Sum_probs=53.4
Q ss_pred CcEEEEEcchhhccc---------HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCC--CCCCCCCChHHHHHHccCCC
Q 007800 458 KRVIACIGDGSFQVT---------AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP--YNVIKNWDYTGLVNAIHNGE 526 (589)
Q Consensus 458 ~~vv~i~GDGsf~~~---------~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~--~~~~~~~d~~~la~a~G~~~ 526 (589)
..+|++.-||.-.-. ......+.+.++++.+|=+-+...++. . ++. ...+..--..++|+.-|+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~--~-~g~~~~~~~d~~~L~~iA~~tgG-- 268 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVE--I-NGQRQPVPVDDESLKKIAQLSGG-- 268 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcC--c-CCceeeecCCHHHHHHHHHhcCC--
Confidence 467889999965421 123344556788888877755432221 0 111 111222347889999999
Q ss_pred CCccEEEeCCHHHHHHHHHHhh
Q 007800 527 GKCWTAKVRSEDELTEAMKTAT 548 (589)
Q Consensus 527 ~~~~~~~v~~~~~l~~al~~a~ 548 (589)
.++.+++.++|++++++.-
T Consensus 269 ---~~~~~~~~~~L~~if~~I~ 287 (326)
T PRK13685 269 ---EFYTAASLEELRAVYATLQ 287 (326)
T ss_pred ---EEEEcCCHHHHHHHHHHHH
Confidence 8999999999999988764
No 369
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=52.22 E-value=10 Score=41.71 Aligned_cols=115 Identities=15% Similarity=0.007 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhcC------CCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCH
Q 007800 221 LEAAVEATADFLNKAV------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~------rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~ 294 (589)
-+++++.+++.|++.+ ...++.+.+.........+..|+..+|.+-+......+..-..+...+|. ...
T Consensus 75 WdeAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~G~----~~~- 149 (501)
T cd02766 75 WDEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGTICSGAGIEAQKYDFGA----SLG- 149 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhcCC----CCC-
Confidence 4667888888877643 23333333333211122236777777766432110000000000111222 111
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc----CCCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~~ 340 (589)
...+-+.++|+||++|+...+.....+..+ .++.|+|.||+.....
T Consensus 150 ~~~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~t 199 (501)
T cd02766 150 NDPEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTAT 199 (501)
T ss_pred CCHHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCcc
Confidence 123456899999999987654322222211 2467999999876544
No 370
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=51.93 E-value=99 Score=27.83 Aligned_cols=97 Identities=21% Similarity=0.170 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcchHHHHHh--h----h-cCCCCeEEecC---chhHHHHhhhhh----hh-----ccCce
Q 007800 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDH--L----I-AEPELNLVGCC---NELNAGYAADGY----AR-----SRGVG 91 (589)
Q Consensus 31 ~~i~~~L~~~GV~~vfg~pG~~~~~l~~a--l----~-~~~~i~~v~~~---hE~~A~~~A~gy----ar-----~tg~~ 91 (589)
+.+++.|.+.+.=++||+-++......-+ + . ...++..+... |+..+..--.+| .+ ....-
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 56889999999999999966654332221 1 1 12455554433 232222111122 11 22235
Q ss_pred EEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCc
Q 007800 92 ACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNS 127 (589)
Q Consensus 92 v~~~t~GpG~~-n~~~~l~~A~~~~~PllvI~g~~~~ 127 (589)
++++-|.+|-+ +.+..+..|...++|++.||+....
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 66666777755 5667777899999999999986433
No 371
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=51.90 E-value=46 Score=27.40 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=38.8
Q ss_pred EEeCcccchhh-HHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCc
Q 007800 240 LVGGPNIRVAK-AQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIF 313 (589)
Q Consensus 240 iv~G~g~~~~~-~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~ 313 (589)
+-.|.|...+. +.+.|++.+++.|+.+-....+.. |+ . +.-..+.+.++|+||++|...
T Consensus 5 ~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~----------g~----~-~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 5 TACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSL----------GI----E-NELTAEDIAEADAVILAADVP 64 (96)
T ss_pred EECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCc----------Cc----c-CcCCHHHHhhCCEEEEecCCC
Confidence 44566666543 678999999999998876544431 11 0 111235678999999999643
No 372
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=51.33 E-value=28 Score=35.15 Aligned_cols=50 Identities=12% Similarity=0.272 Sum_probs=38.9
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
++..+|++.+|+-.-- +.++|..+..+..++++++. ..+.||++|++++|
T Consensus 113 dfqavdi~~ia~pv~k-----wavtv~epalvp~v~qkafhlmrs~rpgpvlidlp~d 165 (592)
T COG3960 113 DFQAVDIEAIAKPVSK-----WAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFD 165 (592)
T ss_pred hhhhhhHHHhhhhhhh-----hhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEecccc
Confidence 3466899999987754 67888888888888888876 34578999988776
No 373
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=50.89 E-value=13 Score=35.97 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=30.8
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccccC--CCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLI--KKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~ 340 (589)
.+.+.+.++|++|++|+++.-.....+-... ++.++|.||.++...
T Consensus 160 ~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~ 207 (218)
T cd01407 160 EAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPA 207 (218)
T ss_pred HHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCC
Confidence 4556677899999999887654433322211 366899999887643
No 374
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=50.53 E-value=17 Score=31.74 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCC
Q 007800 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272 (589)
Q Consensus 223 ~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~ 272 (589)
+.-.+..+.+-+.+-|.|++..|.. ..+.+.++|++.++|++.|...
T Consensus 68 ~~r~~~l~~l~~~~~P~iIvt~~~~---~p~~l~e~a~~~~ipll~t~~~ 114 (127)
T PF02603_consen 68 EERKERLEKLFSYNPPCIIVTRGLE---PPPELIELAEKYNIPLLRTPLS 114 (127)
T ss_dssp HHHCCHHHHHCTTT-S-EEEETTT------HHHHHHHHHCT--EEEESS-
T ss_pred HHHHHHHHHHhCCCCCEEEEECcCC---CCHHHHHHHHHhCCcEEEcCCc
Confidence 3445556667778999999888773 5789999999999999998763
No 375
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=48.76 E-value=47 Score=33.63 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=35.2
Q ss_pred CEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh-hhcCEEEEeCCC
Q 007800 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-ESADAYVFVGPI 312 (589)
Q Consensus 238 pviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l-~~aD~vl~lG~~ 312 (589)
-+|+++.... ..-....+||.+++||++|+.|. ....-..+.+ .+.|.||.+|..
T Consensus 30 ~VIlvsDn~a---D~~lA~~iaellNA~Vlttpwg~-----------------ynes~~~eI~~lnpd~VLIIGGp 85 (337)
T COG2247 30 VVILVSDNEA---DLLLALPIAELLNAPVLTTPWGI-----------------YNESVLDEIIELNPDLVLIIGGP 85 (337)
T ss_pred EEEEecchHH---HHHHhhHHHHHhCCeeEecCccc-----------------ccHHHHHHHHhhCCceEEEECCC
Confidence 4555544332 23455679999999999877432 2223344444 489999999964
No 376
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=48.51 E-value=44 Score=27.52 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=26.4
Q ss_pred CCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 237 rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
|.++++|.|...+-..+.++++++..|+|+-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~ 31 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAE 31 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceE
Confidence 3578899999888778899999999999853
No 377
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=48.47 E-value=5.1 Score=39.77 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=62.5
Q ss_pred HHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCcee
Q 007800 260 DATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVT 339 (589)
Q Consensus 260 e~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 339 (589)
-+.++|++-. |.+-.|-||.=-..+-.-......+.++.+|.||.+-+.+-+..+++.. +...|.|++|++|..
T Consensus 300 vkNniPfvLA----GSIRDDGPlPdvitdvm~Aq~~m~~~l~g~dmvlMlstMLHSIa~GNll--Ps~VKtiCVDiNPav 373 (415)
T COG1915 300 VKNNIPFVLA----GSIRDDGPLPDVITDVMEAQEEMREHLQGADMVLMLSTMLHSIAVGNLL--PSGVKTICVDINPAV 373 (415)
T ss_pred hhcCCCeEEe----cccccCCCCchHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhhcCcc--hhhceEEEEecChHH
Confidence 3567887763 4455666663211100011234556788999999998888777665543 445689999999875
Q ss_pred ecC---C-C--cccc-ccHHHHHHHHHHHhhcC
Q 007800 340 VGN---G-P--SLGW-VFMADFLSALAKKLRKN 365 (589)
Q Consensus 340 ~~~---~-~--~~~~-~~~~~~l~~L~~~l~~~ 365 (589)
+.. + . ..+- .|...||..|...+++-
T Consensus 374 VTKL~DRGs~qavgvVTDVGlFlplL~~elkkl 406 (415)
T COG1915 374 VTKLSDRGSSQAVGVVTDVGLFLPLLVRELKKL 406 (415)
T ss_pred heecccCCccceeEEEeehhHhHHHHHHHHHHh
Confidence 531 1 1 1111 27899999998888654
No 378
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=47.70 E-value=23 Score=42.35 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhcCC-----------------CEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCC--CCC
Q 007800 221 LEAAVEATADFLNKAVK-----------------PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE--HHP 281 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~r-----------------pviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~--~~p 281 (589)
-+++++.+++.|++.+. -+.+.+++....+..-.+.+|+..+|.+-+.....-...+. ...
T Consensus 125 WDEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tnEe~yl~~kf~r~lGt~n~~~~~~~C~~~~~~al~ 204 (1009)
T TIGR01553 125 WDWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDNEECWLYQKWLRSLGLFYIEHQARIUHSPTVASLA 204 (1009)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCcHHHHHHHHHHHHhCCCcccCcccccccHHHHHHH
Confidence 35667777776665321 14444444332233445678888888664432111000000 001
Q ss_pred CceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCcee
Q 007800 282 HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (589)
Q Consensus 282 l~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~ 339 (589)
..+|. +.... . ..=+.+||+||++|+...+.....+.. ..++.++|.||+....
T Consensus 205 ~~~G~--~~~~~-~-~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~ 262 (1009)
T TIGR01553 205 PSFGR--GAMTN-N-WVDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNR 262 (1009)
T ss_pred HhhcC--CCCCC-C-HHHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCc
Confidence 12222 11111 1 223589999999998765443222221 1245799999986543
No 379
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=46.99 E-value=1.1e+02 Score=33.98 Aligned_cols=105 Identities=21% Similarity=0.105 Sum_probs=67.7
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEcchhhccc-H-HHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHH
Q 007800 442 GWSVGATLGYAQAAKDKRVIACIGDGSFQVT-A-QEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLV 519 (589)
Q Consensus 442 G~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~-~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la 519 (589)
..++-.|.|+|.+ .-+|||++- ..|+.- . |=+--.+-+++|+++.|--.+-.|..-..|. .-+|+.-+.
T Consensus 368 QHAVT~AAGlA~~-G~kPvvaIY--STFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~------G~fDls~l~ 438 (627)
T COG1154 368 QHAVTFAAGLAAE-GMKPVVAIY--STFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQ------GLFDLSFLR 438 (627)
T ss_pred HHHHHHHHHHHhC-CCCCEEEEe--cHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccc------cHHHHHHHh
Confidence 3566667777765 468898886 466652 2 2333456689998776665665565111112 234666665
Q ss_pred HHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEE
Q 007800 520 NAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVF 561 (589)
Q Consensus 520 ~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~ 561 (589)
.-=|+ ....-.|.+++++.|..++. ..++|+.|-.+
T Consensus 439 ~iPnm-----vi~aP~de~el~~ml~ta~~-~~~gP~AiRyP 474 (627)
T COG1154 439 CIPNM-----VIMAPRDEEELRQMLYTALA-QDDGPVAIRYP 474 (627)
T ss_pred cCCCc-----EEecCCCHHHHHHHHHHHHh-cCCCCeEEEec
Confidence 44444 55566899999999999996 34489998776
No 380
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=46.89 E-value=9 Score=38.04 Aligned_cols=146 Identities=18% Similarity=0.099 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHH--HHHhhhcCCCCeEEecC----------chhHHHHhhhhhhhccCc-eEE
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCC----------NELNAGYAADGYARSRGV-GAC 93 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~--l~~al~~~~~i~~v~~~----------hE~~A~~~A~gyar~tg~-~v~ 93 (589)
..=..+.++.+.+.|.+.|.-.-+..... +.+.|. ++.++|... +|..-+.+=.||.-..|. ..+
T Consensus 36 t~evnAaiega~~aGa~eVvV~DsHg~~~Nl~~~~L~--~~~~LI~G~~rp~~Mm~Gld~~~Dav~fiGYHa~aGt~~gv 113 (265)
T PF04951_consen 36 TREVNAAIEGAFEAGATEVVVNDSHGSMRNLLPEELP--PRARLIRGSPRPLSMMEGLDESFDAVFFIGYHARAGTPRGV 113 (265)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEE-STTS--S-TTTS---TTSEEEEES--TTGGGTT--TT-SEEEEEEE---TTS-SST
T ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCCCCCcChHHCC--cCeEEEeCCCCcchhhhccccCcCEEEEEecCcccCCCCcc
Confidence 34567788999999999999876544322 333342 467777653 122222222355533332 222
Q ss_pred EEeCCcch------------HHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEE
Q 007800 94 VVTFTVGG------------LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV 161 (589)
Q Consensus 94 ~~t~GpG~------------~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~ 161 (589)
+.|+-.|. ....-..+-|-.-++|++++|||.......+. .+. + ...+.+=+.+.+++..
T Consensus 114 L~HT~~~~~i~~v~iNG~~~gE~~lna~~Ag~~GVPV~lVsGD~~l~~ea~~-----~~P--~-~~tv~vK~~~gr~aA~ 185 (265)
T PF04951_consen 114 LAHTYSGSVIHEVRINGREVGEFGLNAALAGYYGVPVVLVSGDDALCEEAKE-----LLP--W-IVTVAVKEGIGRYAAI 185 (265)
T ss_dssp T--SSSTTE-EEEEETTEEE-HHHHHHHHHHHTT--EEEEEEEHHHHHHHHT-----TST--T--EEEEEEEEEETTEEE
T ss_pred ccceeccccceeEEECCEEcchhHHHHHHHhhcCCcEEEEeCcHHHHHHHHH-----hCC--C-ceEEEEecccCCCccc
Confidence 22222221 22222223345569999999998544321110 111 0 0012233455566788
Q ss_pred eCChhhHHHHHHHHHHHhHhc
Q 007800 162 VNNLGDAHELIDTAISTALKE 182 (589)
Q Consensus 162 v~~~~~~~~~l~~A~~~a~~~ 182 (589)
..+|+.+.+.|+++.+.|...
T Consensus 186 ~~~p~~a~~~i~~~a~~Al~~ 206 (265)
T PF04951_consen 186 SLHPAEACERIREAAKEALER 206 (265)
T ss_dssp E--HHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999863
No 381
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=46.03 E-value=3.3e+02 Score=27.49 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=62.6
Q ss_pred HHHHHHHHhhhcCCCcEEEEEcchhhcc-cHHH-H-HHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHH
Q 007800 444 SVGATLGYAQAAKDKRVIACIGDGSFQV-TAQE-I-STMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVN 520 (589)
Q Consensus 444 ~l~~aiGaala~~~~~vv~i~GDGsf~~-~~~e-l-~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~ 520 (589)
.+++|.|.+++- .+|. +++=+.|++ -..| + .+..+.++|+.+|..+-+- ... .++. ..--++.+|-
T Consensus 61 mvg~AAGLA~~G-k~Pf--v~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~-t~g---~dG~----sHq~~EDiai 129 (312)
T COG3958 61 MVGTAAGLALAG-KKPF--VSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGV-TYG---EDGS----SHQALEDIAI 129 (312)
T ss_pred HHHHHHHHHhcC-CCce--eechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCc-ccC---CCCc----cchhHHHHHH
Confidence 578888888862 3333 456678888 3333 3 3456789999998876552 210 0110 1123555554
Q ss_pred HccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 521 AIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 521 a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
.=|.+ +...+...|.-+.++++..+.+ .+||.-+- +.+...+
T Consensus 130 mR~lp--n~~V~~P~D~v~~~~i~~~~~~--~~GP~Y~R--l~R~~~p 171 (312)
T COG3958 130 MRGLP--NMTVIAPADAVETRAILDQIAD--YKGPVYMR--LGRGKVP 171 (312)
T ss_pred HhcCC--CceEEccCcHHHHHHHHHHHHh--cCCCEEEE--ecCCCCC
Confidence 44441 1244444577788888888876 78887763 4443333
No 382
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=45.98 E-value=33 Score=32.43 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 223 ~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
..+.+++..+...++.+.++--...|.++.++|+.+|+.+|+|++.
T Consensus 16 Tt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 16 TTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp HHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE
T ss_pred hHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch
Confidence 3455665555544666666667777789999999999999999986
No 383
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=45.94 E-value=1.4e+02 Score=26.35 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=53.9
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchH--HHHHhhhc-----CCCCeEEecCchhH--HHH----hhhhhhhc-----
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIA-----EPELNLVGCCNELN--AGY----AADGYARS----- 87 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~--~l~~al~~-----~~~i~~v~~~hE~~--A~~----~A~gyar~----- 87 (589)
....++.+++.+.+-|.=++||.=|+... ++...+.. .+.+..+. .+... +.. --.+|++.
T Consensus 21 i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (138)
T PF13580_consen 21 IEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIA-LNDDALTAISNDLEYDEGFARQLLALY 99 (138)
T ss_dssp HHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEE-TTSTHHHHHHHHTTGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccc-cccchHhhhhcccchhhHHHHHHHHHc
Confidence 35678999999999999999999666433 23332221 11233333 33322 111 12344431
Q ss_pred cCc--eEEEEeCCc-chHHHHHHHHHhhhcCCcEEEEeC
Q 007800 88 RGV--GACVVTFTV-GGLSVLNAIAGAYSENLPVICIVG 123 (589)
Q Consensus 88 tg~--~v~~~t~Gp-G~~n~~~~l~~A~~~~~PllvI~g 123 (589)
..+ =++++-|.. ...|.+-++..|+.-+.++|.|||
T Consensus 100 ~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 100 DIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp T--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 122 233333333 457889999999999999999986
No 384
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=45.40 E-value=1.1e+02 Score=31.66 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchh----hHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHH
Q 007800 222 EAAVEATADFLNKAVKPVLVGGPNIRVA----KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rpviv~G~g~~~~----~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~ 297 (589)
.+.++++++++.++++++++.|.+..+. .....+..|+..+|-- ...|.+.+...+|++.-. ......
T Consensus 230 ~~~i~~la~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~---~~~g~~~~~~~np~~~~~-----~~~~~~ 301 (374)
T cd00368 230 AETIRALAREFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNI---GRPGGGLGPGGNPLVSAP-----DANRVR 301 (374)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCC---CCCCCcCCCCCChhhcCC-----CHHHHH
Confidence 3568889999999999999999988542 2333444555544421 011333444445543211 123455
Q ss_pred HHhhhcCEEEEeCCCcCCcc
Q 007800 298 EIVESADAYVFVGPIFNDYS 317 (589)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~~~ 317 (589)
+++++.|++++++...+++.
T Consensus 302 ~al~~~~~~V~~d~~~~eta 321 (374)
T cd00368 302 AALKKLDFVVVIDIFMTETA 321 (374)
T ss_pred HHHhCCCeEEEEecCCCcch
Confidence 78889999999987665543
No 385
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=44.72 E-value=33 Score=33.79 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=39.9
Q ss_pred HHHHHHhhhcCEEEEeCCCcCCcccccccc--cCCCCceEEEcCCceeecCC-CccccccHHHHHHHHHHHh
Q 007800 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKL 362 (589)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~-~~~~~~~~~~~l~~L~~~l 362 (589)
..+.+.++++|++|++|+++.-+.-..... ..++.++|.||.++..+.+. ......++..+++.|.+.+
T Consensus 174 ~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i~~~a~~~~~~l~~~~ 245 (250)
T COG0846 174 DEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVIRGDAGEVLPLLLEEL 245 (250)
T ss_pred HHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcchhHHHHHhhHHHHHHHHHHHh
Confidence 345566689999999999875544433222 13456888998876654300 0111124455666555444
No 386
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=44.19 E-value=1.6e+02 Score=27.78 Aligned_cols=72 Identities=8% Similarity=0.081 Sum_probs=51.0
Q ss_pred CCcEEEEEcchhh---cccHHHH--HHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccE
Q 007800 457 DKRVIACIGDGSF---QVTAQEI--STMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWT 531 (589)
Q Consensus 457 ~~~vv~i~GDGsf---~~~~~el--~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~ 531 (589)
+.+||.+.-||.. ..+..++ ..+..+++++-.|-+-.. .......+|+.=|+ ++
T Consensus 111 ~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~----------------d~~~l~~iA~~tgG-----~~ 169 (191)
T cd01455 111 DEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSL----------------SDEADQLQRELPAG-----KA 169 (191)
T ss_pred CCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCC----------------CHHHHHHHHhCCCC-----cE
Confidence 4679999999974 3356664 335568888766655321 11136677888888 99
Q ss_pred EEeCCHHHHHHHHHHhhh
Q 007800 532 AKVRSEDELTEAMKTATG 549 (589)
Q Consensus 532 ~~v~~~~~l~~al~~a~~ 549 (589)
+++.+.++|++.+++-+.
T Consensus 170 F~A~d~~~L~~iy~~I~~ 187 (191)
T cd01455 170 FVCMDTSELPHIMQQIFT 187 (191)
T ss_pred EEeCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 387
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=43.15 E-value=1.2e+02 Score=35.80 Aligned_cols=166 Identities=12% Similarity=0.099 Sum_probs=89.8
Q ss_pred cccCCCcccHHHHHHHHHHHcCCCEE-Eec------------CCcchHHHHHhhhcC---------CCCeEEecC-----
Q 007800 20 VRGGASVGTLGRHLARRLVEIGAKDV-FSV------------PGDFNLTLLDHLIAE---------PELNLVGCC----- 72 (589)
Q Consensus 20 ~~~~~~~~~~a~~i~~~L~~~GV~~v-fg~------------pG~~~~~l~~al~~~---------~~i~~v~~~----- 72 (589)
..|.-.++++=+.|++...+.||+.+ +|. -|-+...++..+... .+++|-...
T Consensus 220 lEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~ 299 (929)
T TIGR00239 220 LEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDF 299 (929)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCccccc
Confidence 34555678888999999999999654 555 344444455554321 122233331
Q ss_pred ----------------chhHHHHhhhhhhhcc----C------ceEEEEeCCcchH-H---HHHHHHHhhhcCCcE---E
Q 007800 73 ----------------NELNAGYAADGYARSR----G------VGACVVTFTVGGL-S---VLNAIAGAYSENLPV---I 119 (589)
Q Consensus 73 ----------------hE~~A~~~A~gyar~t----g------~~v~~~t~GpG~~-n---~~~~l~~A~~~~~Pl---l 119 (589)
|=.+---.|.|.+|+. + +.++++..|=|+. | ..=++--|..-+.|+ |
T Consensus 300 ~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtI 379 (929)
T TIGR00239 300 TTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTI 379 (929)
T ss_pred ccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEE
Confidence 1111112345555542 2 3677777786663 2 222333356678896 7
Q ss_pred EEeCCCCccccCCccceeeecCCCChHHHHHhhhc--ceeEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 120 CIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA--ITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 120 vI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
+|+-...-. ..+.. .+....... .+..+. +.-+...=.+++.+...++.|++.+....|||.|++-
T Consensus 380 fvveNNqyg-~tT~~--~~~~s~~~~---sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~ 447 (929)
T TIGR00239 380 HIIINNQIG-FTTNP--LDARSTPYC---SDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLV 447 (929)
T ss_pred EEEEeCCEE-EEEcH--HHhcCccCH---HHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 766442111 11100 000000011 122232 2233444467888899999999999999999999984
No 388
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=42.60 E-value=75 Score=33.54 Aligned_cols=43 Identities=2% Similarity=0.030 Sum_probs=30.7
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCce
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv 266 (589)
.++++.+.+++ .+|++|+.|......+..+.+.+..+..++.+
T Consensus 18 ~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~ 62 (383)
T PRK09860 18 SLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFS 62 (383)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeE
Confidence 44555555554 47888888877766667778888888888764
No 389
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=42.58 E-value=45 Score=39.00 Aligned_cols=113 Identities=19% Similarity=0.065 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHH-HhCCceEEccCCccCCCCCC----CCceeeecCCCCCH
Q 007800 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD-ATGYPIAIMPSGKGLVPEHH----PHFIGTYWGAVSSS 294 (589)
Q Consensus 220 ~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae-~~~~Pv~tt~~~~g~~~~~~----pl~~G~~~g~~~~~ 294 (589)
.-+++++.+++.|++.+..+-+.+++....+..-.+.+|+. .+|.+-+... ++-.-+... ....|. ...
T Consensus 295 SWdEAld~ia~kL~~i~~~ia~~~s~~~t~Ee~y~~~kl~r~~lgt~nid~~-~r~~~~~~~~~~~~~~~g~----~~~- 368 (797)
T PRK07860 295 SWSEALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTNDIDFR-ARPHSAEEADFLAARVAGR----GLG- 368 (797)
T ss_pred CHHHHHHHHHHHHHhhhccEEEEeCCCCCHHHHHHHHHHHHHhcCCCccccc-cccccchHHHHHHhhccCC----CCC-
Confidence 34678888888888876655444433222222334567776 4665544211 110000000 111111 101
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc-----CCCCceEEEcCCce
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL-----IKKEKAIIVQPHRV 338 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~-----~~~~~~i~id~d~~ 338 (589)
...+-+.++|+||++|+...+.....+..+ ..+.++|.||+-..
T Consensus 369 ~~~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t 417 (797)
T PRK07860 369 VTYADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFAT 417 (797)
T ss_pred CCHHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCc
Confidence 122346799999999987654322111111 24568999998554
No 390
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.53 E-value=1.3e+02 Score=30.13 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccch----------hhHHHHHHHHHHHhCCceEEccCC
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRV----------AKAQKAFIELADATGYPIAIMPSG 272 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~----------~~~~~~l~~lae~~~~Pv~tt~~~ 272 (589)
+.+.+.+.++.|++..-+++..|.--.| .+..+.+.++++++|+|+++++..
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d 100 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMD 100 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 4567778888888888888888822111 235678999999999999998765
No 391
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.80 E-value=78 Score=25.95 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=33.5
Q ss_pred EEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCH--HHHHHhhhcCEEEEe
Q 007800 239 VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS--FCGEIVESADAYVFV 309 (589)
Q Consensus 239 viv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~--~~~~~l~~aD~vl~l 309 (589)
++++|+... ....+++++++.|.-+..= |. .+..... .....+.+||+||++
T Consensus 2 vliVGG~~~---~~~~~~~~~~~~G~~~~~h---------------g~-~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 2 VLIVGGRED---RERRYKRILEKYGGKLIHH---------------GR-DGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred EEEEcCCcc---cHHHHHHHHHHcCCEEEEE---------------ec-CCCCccchhHHHHhcCCCCEEEEE
Confidence 566776333 4678899999999877652 11 1111222 256778999999997
No 392
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=41.68 E-value=1e+02 Score=32.47 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=44.2
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh-
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l- 300 (589)
.++++.+.+.+ .+|++|+.|......+..+.+.+..++.++.+.. +.+ + +.+|-.-.+ ..+.+.+
T Consensus 13 ~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~-~~~---v-~~~p~~~~v-------~~~~~~~~ 80 (376)
T cd08193 13 SLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTV-FDD---V-EADPPEAVV-------EAAVEAAR 80 (376)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-ECC---C-CCCcCHHHH-------HHHHHHHH
Confidence 34555555554 5889998888766555677888887877775532 111 1 223322111 1122222
Q ss_pred -hhcCEEEEeCC
Q 007800 301 -ESADAYVFVGP 311 (589)
Q Consensus 301 -~~aD~vl~lG~ 311 (589)
.++|+||.+|.
T Consensus 81 ~~~~D~IIaiGG 92 (376)
T cd08193 81 AAGADGVIGFGG 92 (376)
T ss_pred hcCCCEEEEeCC
Confidence 37899999983
No 393
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=41.53 E-value=1.2e+02 Score=32.87 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=57.7
Q ss_pred CHHHHHHHHHhhC--------CCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEE
Q 007800 392 RVNVLFKHIQDML--------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIAC 463 (589)
Q Consensus 392 ~~~~~~~~L~~~l--------~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i 463 (589)
.+..++..+.+.+ ....++|+-.++.-. . ++-+|++|...|-||++|+-+.-. .+..|.++
T Consensus 234 e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~-I------DpVR~ItN~SSGkmG~alA~aa~~----~GA~VtlI 302 (475)
T PRK13982 234 EPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEP-I------DPVRYIANRSSGKQGFAIAAAAAA----AGAEVTLI 302 (475)
T ss_pred CHHHHHHHHHHHHhhccccccCCCEEEEecCCcccc-C------CcceeeCCCCchHHHHHHHHHHHH----CCCcEEEE
Confidence 4566666655443 334566654443321 1 345699999999999998766533 36789999
Q ss_pred Ecchhh----------cccHHHHHHHHHhCCCeEEEEEe
Q 007800 464 IGDGSF----------QVTAQEISTMIRCGQRSIIFLIN 492 (589)
Q Consensus 464 ~GDGsf----------~~~~~el~ta~~~~l~v~ivv~n 492 (589)
.|-.++ .-+..|+..++...++.-++|+.
T Consensus 303 ~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~~Di~I~a 341 (475)
T PRK13982 303 SGPVDLADPQGVKVIHVESARQMLAAVEAALPADIAIFA 341 (475)
T ss_pred eCCcCCCCCCCceEEEecCHHHHHHHHHhhCCCCEEEEe
Confidence 987664 12578998888766655555553
No 394
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=41.10 E-value=72 Score=33.72 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=43.0
Q ss_pred HHHHHHHHHH--hcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhh
Q 007800 224 AVEATADFLN--KAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (589)
Q Consensus 224 ~i~~~~~~L~--~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~ 301 (589)
.+.+++.... .-++-|-++--...|-+|.++|+.+|+.+|+|+-.-...+. -..+...+.
T Consensus 219 TlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~e------------------l~~ai~~l~ 280 (407)
T COG1419 219 TLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKE------------------LAEAIEALR 280 (407)
T ss_pred HHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHH------------------HHHHHHHhh
Confidence 4444444333 33444555556677778999999999999999986333220 023445567
Q ss_pred hcCEEEE
Q 007800 302 SADAYVF 308 (589)
Q Consensus 302 ~aD~vl~ 308 (589)
++|+||+
T Consensus 281 ~~d~ILV 287 (407)
T COG1419 281 DCDVILV 287 (407)
T ss_pred cCCEEEE
Confidence 8998887
No 395
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=41.06 E-value=1.4e+02 Score=28.22 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHh-cCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007800 222 EAAVEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (589)
Q Consensus 222 ~~~i~~~~~~L~~-a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l 300 (589)
...+++|++.|.. +.+-++++|..- .+...++++|++.|.+.++.- ++| |.+.+.. .+-+
T Consensus 46 ~~~L~~A~~~i~~i~~~~ILfVgtk~---~~~~~V~~~A~~~g~~~v~~R------------Wlg---GtLTN~~-~~~~ 106 (196)
T TIGR01012 46 DERLRVAAKFLVRIEPEDILVVSARI---YGQKPVLKFAKVTGARAIAGR------------FTP---GTFTNPM-QKAF 106 (196)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEecCH---HHHHHHHHHHHHhCCceECCe------------eCC---CCCCCcc-cccc
Confidence 3467777776665 355577777544 367789999999998887631 111 2222211 1235
Q ss_pred hhcCEEEEeCCCcC
Q 007800 301 ESADAYVFVGPIFN 314 (589)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (589)
...|+|++++..-+
T Consensus 107 ~~Pdlliv~dp~~~ 120 (196)
T TIGR01012 107 REPEVVVVTDPRAD 120 (196)
T ss_pred CCCCEEEEECCccc
Confidence 78999999986543
No 396
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=40.98 E-value=78 Score=29.84 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=47.3
Q ss_pred CcEEEEEcchhhcccHHHHHHHHHh---CCCeEEEEEeC-CchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEE
Q 007800 458 KRVIACIGDGSFQVTAQEISTMIRC---GQRSIIFLINN-GGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK 533 (589)
Q Consensus 458 ~~vv~i~GDGsf~~~~~el~ta~~~---~l~v~ivv~nN-~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~ 533 (589)
+-+|++.|-||- ++.|..+.+. +.-+..|+.|| +.|+.+ .|+..|+ +.+.
T Consensus 2 ki~VlaSG~GSN---lqaiida~~~~~~~a~i~~Visd~~~A~~le------------------rA~~~gI-----pt~~ 55 (200)
T COG0299 2 KIAVLASGNGSN---LQAIIDAIKGGKLDAEIVAVISDKADAYALE------------------RAAKAGI-----PTVV 55 (200)
T ss_pred eEEEEEeCCccc---HHHHHHHHhcCCCCcEEEEEEeCCCCCHHHH------------------HHHHcCC-----CEEE
Confidence 457888898884 5667776663 34577788888 667763 4556666 3333
Q ss_pred e-----CCHHHHHHHHHHhhhcCCCCeEEE
Q 007800 534 V-----RSEDELTEAMKTATGEQKDSLCFI 558 (589)
Q Consensus 534 v-----~~~~~l~~al~~a~~~~~~gp~vi 558 (589)
+ .+.++++.+|.+.+. ..+|-+|
T Consensus 56 ~~~k~~~~r~~~d~~l~~~l~--~~~~dlv 83 (200)
T COG0299 56 LDRKEFPSREAFDRALVEALD--EYGPDLV 83 (200)
T ss_pred eccccCCCHHHHHHHHHHHHH--hcCCCEE
Confidence 3 256677777777775 5556554
No 397
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.32 E-value=51 Score=27.43 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=25.2
Q ss_pred CEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 238 pviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
.++++|.|...+-..+.++++++..|+++-.
T Consensus 3 Ill~C~~GaSSs~la~km~~~a~~~gi~~~i 33 (99)
T cd05565 3 VLVLCAGGGTSGLLANALNKGAKERGVPLEA 33 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 5677888877666889999999999998643
No 398
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=39.92 E-value=1.1e+02 Score=30.15 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhc--CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007800 223 AAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (589)
Q Consensus 223 ~~i~~~~~~L~~a--~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l 300 (589)
..+..|++.|... ..-++++|... .+...+.++|++.|.+.++. | -+| |.+.+. ....+
T Consensus 56 ~~L~~Aa~~i~~i~~~~~Il~Vstr~---~~~~~V~k~A~~tg~~~i~~---R-w~p-----------GtlTN~-~~~~f 116 (249)
T PTZ00254 56 EKLKLAARVIAAIENPADVVVVSSRP---YGQRAVLKFAQYTGASAIAG---R-FTP-----------GTFTNQ-IQKKF 116 (249)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEcCH---HHHHHHHHHHHHhCCeEECC---c-ccC-----------CCCCCc-ccccc
Confidence 4566666666543 34477776543 36789999999999887652 1 111 222221 22345
Q ss_pred hhcCEEEEeCCCcC
Q 007800 301 ESADAYVFVGPIFN 314 (589)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (589)
...|+||++..+-+
T Consensus 117 ~~P~llIV~Dp~~d 130 (249)
T PTZ00254 117 MEPRLLIVTDPRTD 130 (249)
T ss_pred CCCCEEEEeCCCcc
Confidence 78999999986543
No 399
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=39.89 E-value=29 Score=38.77 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCcccchhhHHHHHHHHHHH-hCCceEEccCCccCCCC--CCCCceeeecCCC
Q 007800 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPE--HHPHFIGTYWGAV 291 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a------~rpviv~G~g~~~~~~~~~l~~lae~-~~~Pv~tt~~~~g~~~~--~~pl~~G~~~g~~ 291 (589)
-+++++.+++.|++. +...++.| +.........+.+|+.. +|.+.+.+...--.-+. .....+|. +..
T Consensus 72 WdeAl~~ia~kl~~i~~~~G~~~i~~~~~-~~~~~e~~~~~~~l~~~~~gs~~~~~~~~~c~~~~~~~~~~~~G~--~~~ 148 (565)
T cd02754 72 WDEALDLIAERFKAIQAEYGPDSVAFYGS-GQLLTEEYYAANKLAKGGLGTNNIDTNSRLCMASAVAGYKRSFGA--DGP 148 (565)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEec-CCccHHHHHHHHHHHHHhCCCCcccCCCcccchHHHHHHHhhccC--CCC
Confidence 466788888887753 23444434 33222233456667753 66555432110000000 00011121 000
Q ss_pred CCHHHHHHhhhcCEEEEeCCCcCCccccccccc----CC--CCceEEEcCCceee
Q 007800 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IK--KEKAIIVQPHRVTV 340 (589)
Q Consensus 292 ~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~--~~~~i~id~d~~~~ 340 (589)
. ....-+.++|+||++|+.+.+.....+..+ .+ +.++|.||+.....
T Consensus 149 ~--~~~~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~t 201 (565)
T cd02754 149 P--GSYDDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRT 201 (565)
T ss_pred C--CCHHHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcc
Confidence 1 112234799999999988654432222111 13 67999999876543
No 400
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=39.74 E-value=24 Score=33.95 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=31.3
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc--CCCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~ 340 (589)
.+.+.+.++|++|++|+++.......+-.. ..+.++|.|+.++...
T Consensus 162 ~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~ 209 (222)
T cd00296 162 RALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPA 209 (222)
T ss_pred HHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCC
Confidence 344556789999999999887655433221 2456788898887643
No 401
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=39.57 E-value=2.3e+02 Score=26.00 Aligned_cols=101 Identities=20% Similarity=0.174 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHh--hhc-----CCCCeEEecC---chhHHHHhhhhhh---------hc
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LIA-----EPELNLVGCC---NELNAGYAADGYA---------RS 87 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~a--l~~-----~~~i~~v~~~---hE~~A~~~A~gya---------r~ 87 (589)
...++.|++.+.+.+.=++||+-++......-+ |.. ..++.++... +|..+..--.+|. ..
T Consensus 20 ~~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (177)
T cd05006 20 EQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALG 99 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhC
Confidence 345666666666666667777755543332211 221 1245554433 2322222112221 23
Q ss_pred cCceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCc
Q 007800 88 RGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (589)
Q Consensus 88 tg~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 127 (589)
+..-+++.-|-.| .-+.+..+..|...++|+|.||+....
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3343444344444 458889999999999999999987443
No 402
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=39.37 E-value=99 Score=33.03 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=30.6
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 225 i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
++++.+.+++ .+|++|+.|.+....+..+.+.+..+..|+.+.
T Consensus 11 ~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~ 55 (414)
T cd08190 11 TAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFE 55 (414)
T ss_pred HHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEE
Confidence 4455555554 478999999887766667888887777777664
No 403
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=39.21 E-value=27 Score=36.53 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhh--h
Q 007800 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE--S 302 (589)
Q Consensus 225 i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~--~ 302 (589)
++++.+.+.+.+|++||.|......+..+.+....++.++.+..-.. + ..+|-.-.+ ..+.+.++ +
T Consensus 11 l~~l~~~l~~~gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~----~-~~~p~~~~v-------~~~~~~~~~~~ 78 (366)
T PF00465_consen 11 LEELGEELKRLGRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDG----V-GPNPTLEDV-------DEAAEQARKFG 78 (366)
T ss_dssp GGGHHHHHHCTTEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEE----E-SSS-BHHHH-------HHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEEEECchHHhCccHHHHHHHHhhCceEEEEEec----C-CCCCcHHHH-------HHHHHHHHhcC
Confidence 44555666665699999998555555778888888888887754110 0 122322111 12333333 7
Q ss_pred cCEEEEeCC
Q 007800 303 ADAYVFVGP 311 (589)
Q Consensus 303 aD~vl~lG~ 311 (589)
+|+||.||.
T Consensus 79 ~D~IIaiGG 87 (366)
T PF00465_consen 79 ADCIIAIGG 87 (366)
T ss_dssp SSEEEEEES
T ss_pred CCEEEEcCC
Confidence 999999984
No 404
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=38.82 E-value=33 Score=27.74 Aligned_cols=64 Identities=23% Similarity=0.378 Sum_probs=39.1
Q ss_pred CCEEEeCcccchhhHHHHHHHHHHHhCCceEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCC
Q 007800 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI 312 (589)
Q Consensus 237 rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~--~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~ 312 (589)
+-|+-+|.|....+..+.+++||+.+|+-|-.|-. ..|.+|.+ ..+|. .|.. -.+++.|.+|-+
T Consensus 8 ~~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~--~qIG~-sG~~---------v~P~lyia~GIS 73 (86)
T PF00766_consen 8 EVVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRE--RQIGQ-SGKT---------VAPKLYIAFGIS 73 (86)
T ss_dssp SEEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GG--GBBST-TSB-----------T-SEEEEES--
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchh--hhcCC-CCcE---------EeeeeeEeecch
Confidence 45667888888777889999999999999888653 35666654 34444 1211 267899999853
No 405
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.77 E-value=66 Score=30.52 Aligned_cols=47 Identities=30% Similarity=0.350 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
..++++.++..|.-|++|||=+-+.... -..+++.+||+.+|+++-.
T Consensus 55 A~eA~raAaA~LlLAk~PVISVNGN~AA-L~p~e~v~La~~~~aklEV 101 (256)
T COG1701 55 ALEAIRAAAAALLLAKHPVISVNGNVAA-LVPEEVVELAEATGAKLEV 101 (256)
T ss_pred HHHHHHHHHHHHHhccCCeEEEcCceee-eCcHHHHHHHHHhCCceEE
Confidence 4567778888888899999988776653 3678999999999988754
No 406
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=38.74 E-value=97 Score=32.63 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=30.5
Q ss_pred HHHHHHHHHHh-cCCCEEEeCccc-chhhHHHHHHHHHHHhCCceE
Q 007800 224 AVEATADFLNK-AVKPVLVGGPNI-RVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 224 ~i~~~~~~L~~-a~rpviv~G~g~-~~~~~~~~l~~lae~~~~Pv~ 267 (589)
.++++.+.+++ .+|++|+.|.+. ...+..+.+.+..++.++.+.
T Consensus 13 ~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~ 58 (380)
T cd08185 13 KLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVV 58 (380)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEE
Confidence 34455555553 378999998876 355677888888888887654
No 407
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=38.73 E-value=44 Score=26.71 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=36.2
Q ss_pred CCEEEeCcccchhhHH-HHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEe
Q 007800 237 KPVLVGGPNIRVAKAQ-KAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (589)
Q Consensus 237 rpviv~G~g~~~~~~~-~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~l 309 (589)
|.++++|.|...+-.. ..+++.+++.|+.+..+... .........++|+||.-
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~--------------------~~~~~~~~~~~D~il~~ 54 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS--------------------ILEVEEIADDADLILLT 54 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE--------------------TTTHHHHHTT-SEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec--------------------ccccccccCCCcEEEEc
Confidence 3578899999887765 89999999999766642221 01244555779998764
No 408
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=38.61 E-value=89 Score=32.91 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
.++++.+.+.+ .+|++|+.|......+..+.+.+..++.++.+.
T Consensus 16 ~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~ 61 (379)
T TIGR02638 16 AIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYE 61 (379)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEE
Confidence 34455455544 479999998887665677888888888887654
No 409
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=38.51 E-value=1e+02 Score=32.42 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh-
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l- 300 (589)
.++++.+.+++ .+|++|+.|......+..+.+.+..+..++.+.. +.+ + +.+|-.-.+ ..+.+.+
T Consensus 10 ~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~-~~~---v-~~~p~~~~v-------~~~~~~~~ 77 (375)
T cd08194 10 AVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAI-FDD---V-VSEPTDESV-------EEGVKLAK 77 (375)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEE-ECC---C-CCCcCHHHH-------HHHHHHHH
Confidence 44555555553 5799999988777655667788888877876532 111 1 123321111 1222222
Q ss_pred -hhcCEEEEeCC
Q 007800 301 -ESADAYVFVGP 311 (589)
Q Consensus 301 -~~aD~vl~lG~ 311 (589)
.++|+||.||.
T Consensus 78 ~~~~D~IIaiGG 89 (375)
T cd08194 78 EGGCDVIIALGG 89 (375)
T ss_pred hcCCCEEEEeCC
Confidence 47899999984
No 410
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=38.25 E-value=49 Score=37.33 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhcC----CCEEEe--Ccccch---hhHHHHHHHHHHHhCCceEEc-cCCccCCCCCCCCceeeecCC
Q 007800 221 LEAAVEATADFLNKAV----KPVLVG--GPNIRV---AKAQKAFIELADATGYPIAIM-PSGKGLVPEHHPHFIGTYWGA 290 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~----rpviv~--G~g~~~---~~~~~~l~~lae~~~~Pv~tt-~~~~g~~~~~~pl~~G~~~g~ 290 (589)
-+++++.+++.|++.+ .-.|+. |.+... ......+.+|+..+|.++-.. ..+-+..-..++..+|.. ..
T Consensus 78 WDEAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~c~~~~~~~~~~~~G~~-~~ 156 (609)
T cd02751 78 WDEALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGYLGSYGTYSTGAAQVILPHVVGSD-EV 156 (609)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCCcCCCCCccHHHHHhHhhhEEccc-hh
Confidence 4567788887776522 123322 222211 123456678888777543210 000000001112333321 00
Q ss_pred C-CCHHHHHHhhhcCEEEEeCCCcCCcccccc--------cc----cCCCCceEEEcCCceee
Q 007800 291 V-SSSFCGEIVESADAYVFVGPIFNDYSSVGY--------SL----LIKKEKAIIVQPHRVTV 340 (589)
Q Consensus 291 ~-~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~--------~~----~~~~~~~i~id~d~~~~ 340 (589)
. ......++..+||+||++|+.+.+.....| .. ..++.|+|.||+.....
T Consensus 157 ~~~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~t 219 (609)
T cd02751 157 YEQGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDT 219 (609)
T ss_pred ccCCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCcc
Confidence 0 011233443459999999987654432221 11 12467999999876543
No 411
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=38.10 E-value=68 Score=27.68 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 224 ~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
.+.+..+.|.+++---+.+..+-....-.+++.++|++++.|++.
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ 104 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIE 104 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEE
Confidence 456666667666555555555433345778999999999999998
No 412
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=38.04 E-value=56 Score=32.53 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=83.4
Q ss_pred cccccCCCcccHHHHHHHHHHHcCCCEEEecCCcchH--HHHHhhhcCCCCeEEecC----------chhHHHHhhhhhh
Q 007800 18 APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIAEPELNLVGCC----------NELNAGYAADGYA 85 (589)
Q Consensus 18 ~~~~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~--~l~~al~~~~~i~~v~~~----------hE~~A~~~A~gya 85 (589)
.++++-..+..=..+.++.+.+.|.+.|.-.-+...+ =+.+.|. ++.++|... +|..-+.+=.||.
T Consensus 27 ~Y~r~r~~mT~evnAaiega~~aGa~eVvV~DsHg~~~Nll~e~L~--~~a~LI~G~pkp~~Mm~Gld~~~D~v~fiGYH 104 (266)
T cd08663 27 EYERARRLMTDEVNAAIEGALEAGATEVLVNDSHGSMRNLLPEDLD--PRARLISGSPKPLGMMEGLDEGFDAALFVGYH 104 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCC--ccEEEEecCCCCchhhhccccCcCEEEEEecC
Confidence 3443332233445678899999999999988654332 3444443 456666322 3333344445644
Q ss_pred -hccC-ceEEEEeCCcch------------HHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHh
Q 007800 86 -RSRG-VGACVVTFTVGG------------LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC 151 (589)
Q Consensus 86 -r~tg-~~v~~~t~GpG~------------~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (589)
++.. .+++. |+-.|. ....-.-+-|-.-++||+++|||.......+. +. ++ ...+.+
T Consensus 105 a~ag~~~gvL~-HT~s~~~v~~v~iNG~~vgE~glna~~Ag~~gVPV~lVsGDd~~~~ea~~------~~-p~-i~tv~v 175 (266)
T cd08663 105 ARAGTPPGVLS-HTYSGGAVRDVRLNGREVGETGLNAAVAGEYGVPVVLVTGDDAACAEARE------LG-PG-VETVAV 175 (266)
T ss_pred CCcCCCCCccc-ccccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHh------hC-CC-cEEEEE
Confidence 3433 24432 222111 11111222344569999999999544321110 00 00 011233
Q ss_pred hhcceeEEEEeCChhhHHHHHHHHHHHhHh
Q 007800 152 FQAITCSQAVVNNLGDAHELIDTAISTALK 181 (589)
Q Consensus 152 ~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 181 (589)
=+.+.+++....+|+++.+.|+++.+.|..
T Consensus 176 K~~~gr~aa~~~~p~~a~~~I~~~a~~Al~ 205 (266)
T cd08663 176 KEAIGRFAARCLPPAEARALIREAAAEAVR 205 (266)
T ss_pred ecccCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 345666788888999999999999988863
No 413
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=37.95 E-value=5.5e+02 Score=27.71 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=27.2
Q ss_pred HHHHHHHHHhc-CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccC
Q 007800 225 VEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (589)
Q Consensus 225 i~~~~~~L~~a-~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~ 271 (589)
.+.+++..++. .+|++....+.. ..++.++..+..|+|++.++.
T Consensus 390 a~~l~~~~~~~~~KPvv~~~~gg~---~~~~~~~~L~~~Gip~f~~p~ 434 (447)
T TIGR02717 390 AKGIIEGAKKSNEKPVVAGFMGGK---SVDPAKRILEENGIPNYTFPE 434 (447)
T ss_pred HHHHHHHHHhcCCCcEEEEecCCc---cHHHHHHHHHhCCCCccCCHH
Confidence 34455555665 889977654322 334556656678999987654
No 414
>PRK02947 hypothetical protein; Provisional
Probab=37.94 E-value=1.3e+02 Score=29.60 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=53.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhh-cCCCC---eEEe----cCchh----HHHHhhhhh-------hhc
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLI-AEPEL---NLVG----CCNEL----NAGYAADGY-------ARS 87 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~-~~~~i---~~v~----~~hE~----~A~~~A~gy-------ar~ 87 (589)
...++.|++.|.+.+-=++||.-++.. +-..+. +-..+ ..+. ..+.. .+.....+| +..
T Consensus 27 ~~aa~lla~~i~~a~~I~i~G~G~S~~--vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (246)
T PRK02947 27 EKAADLIADSIRNGGLIYVFGTGHSHI--LAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDI 104 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCcHHHH--HHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCC
Confidence 467788889998888888888755543 222222 11001 1110 00001 111121222 122
Q ss_pred cCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCC
Q 007800 88 RGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPN 126 (589)
Q Consensus 88 tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~ 126 (589)
+.. .+++.+...-.-+.+..+-.|...++|+|.||+...
T Consensus 105 ~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 105 RPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 333 444444443455677888889999999999999754
No 415
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=37.58 E-value=20 Score=35.75 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=80.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcch--HHHHHhhhcCCCCeEEecC----------chhHHHHhhhhhhhccCc-eEE
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFN--LTLLDHLIAEPELNLVGCC----------NELNAGYAADGYARSRGV-GAC 93 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~--~~l~~al~~~~~i~~v~~~----------hE~~A~~~A~gyar~tg~-~v~ 93 (589)
..=..+.++.+.+.|.+.|.-.-+... .=+++.|. ++.++|... +|..-+.+=.||.-..|. ..+
T Consensus 36 T~evnAaiega~~aGa~eIvV~DsHg~~~Nl~~e~L~--~~a~LI~G~prp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gv 113 (270)
T cd08769 36 TEELNAVLEELFESGFEEIVVADSHGRMDNIDYEELD--PRVSLVSGYPRPLSMMTGLDESFDAVLFIGYHAGAGTPKGI 113 (270)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEcCCCCcCCCChHHCC--cceEEEecCCCCchHhhccccCccEEEEEecCCCCCCCCCc
Confidence 345677889999999999988865432 22444453 455555332 333334444566543333 233
Q ss_pred EEeCCcch------------HHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEE
Q 007800 94 VVTFTVGG------------LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV 161 (589)
Q Consensus 94 ~~t~GpG~------------~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~ 161 (589)
+.|+-.|. ....-.-+-|-.-++||+++|||......... .. ++ ...+.+=+.+.+++..
T Consensus 114 l~HT~s~~~~~~v~iNG~~~gE~~lNa~~Ag~~gVPV~lVsGDd~~~~ea~~-----~~--P~-~~tv~vK~~~gr~aA~ 185 (270)
T cd08769 114 MDHTYSGSTIYNIWINGKEMNETLINAAYAGEFGVPVVLVAGDSELEKEVKE-----ET--PW-AVFVPTKESLSRYSAK 185 (270)
T ss_pred cccccccCceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHH-----hC--CC-ceEEEEeeecCCCccc
Confidence 33442221 11122222344569999999999533211110 00 00 0112333556667888
Q ss_pred eCChhhHHHHHHHHHHHhHh
Q 007800 162 VNNLGDAHELIDTAISTALK 181 (589)
Q Consensus 162 v~~~~~~~~~l~~A~~~a~~ 181 (589)
..+|+.+.+.|+++.+.|..
T Consensus 186 ~~~p~~a~~~I~~aa~~Al~ 205 (270)
T cd08769 186 SPSMKKVKEELREAVKEALE 205 (270)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 88899999999999988874
No 416
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=37.18 E-value=2.3e+02 Score=27.81 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 106 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~ 106 (589)
...++.|++.+.+.|++.|..+-|.+... +.+.+.+.++.+.+|...-+...| ...-..|.+ +||+. .
T Consensus 93 ~e~s~~v~~w~~~~~v~~ii~~~g~~~~~----~~e~~~v~~va~~~~~~~~l~~~~-~~~~~~G~I---~G~~g----~ 160 (244)
T COG1938 93 YEISNAVVEWAEENGVEEVISLGGMPARL----REEKPSVYGVATSEEKLEKLKDLG-AEPLEEGTI---VGPSG----A 160 (244)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCccc----ccCCCceEEEecchhhhhHHhhcC-CCcccccee---ecccH----H
Confidence 35689999999999999999998874332 223357899999999888888777 332222533 46552 2
Q ss_pred HHHHhhhcCCcEEEEeCCCCcc
Q 007800 107 AIAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 107 ~l~~A~~~~~PllvI~g~~~~~ 128 (589)
=+.++...++|=++|-+.....
T Consensus 161 ll~e~~~r~i~a~~ll~et~~~ 182 (244)
T COG1938 161 LLNECLKRGIPALVLLAETFGD 182 (244)
T ss_pred HHHHHHHcCCCeEEEeccccCC
Confidence 3445677889988877664443
No 417
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=37.06 E-value=2.8e+02 Score=31.13 Aligned_cols=156 Identities=13% Similarity=-0.030 Sum_probs=92.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCC---cchHHHHHhhh----cCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCC
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPG---DFNLTLLDHLI----AEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFT 98 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG---~~~~~l~~al~----~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~G 98 (589)
++..+.-.++.|...--+.+-|... ++.+.+-+.-. +..+=.+..-.-|.+.+.++-|.+.-.|.-..-.|--
T Consensus 356 TR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg~~pyggTFl 435 (663)
T COG0021 356 TRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFL 435 (663)
T ss_pred hHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcCceeecceeh
Confidence 3455566666666664444444332 33333222211 1123345566789999999999998777211111111
Q ss_pred cchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHHHHH
Q 007800 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAIS 177 (589)
Q Consensus 99 pG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~ 177 (589)
.=.--+-+++--|...++|++++-.......-..++ ++|-++|+..+|.+--. ..++-+.. ....|++
T Consensus 436 vFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGP-------THqPiEqLa~LRaiPN~~V~RPaD~~----Et~~aw~ 504 (663)
T COG0021 436 VFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGP-------THQPVEQLASLRAIPNLSVIRPADAN----ETAAAWK 504 (663)
T ss_pred hhHhhhhHHHHHHHhcCCCeEEEEecCceecCCCCC-------CCCcHHHHHHhhccCCceeEecCChH----HHHHHHH
Confidence 112245688888889999999987664443222232 34567888888887653 33444433 4477888
Q ss_pred HhHhc-CCcEEEEeCC
Q 007800 178 TALKE-SKPVYISISC 192 (589)
Q Consensus 178 ~a~~~-~gPV~i~iP~ 192 (589)
.|... .||..|.+.+
T Consensus 505 ~Al~~~~gPt~LiltR 520 (663)
T COG0021 505 YALERKDGPTALILTR 520 (663)
T ss_pred HHHhcCCCCeEEEEec
Confidence 88885 7999999874
No 418
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=36.82 E-value=57 Score=28.58 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=15.5
Q ss_pred HHHHHHHcCCCEEEecCCcchHHHHHhh
Q 007800 33 LARRLVEIGAKDVFSVPGDFNLTLLDHL 60 (589)
Q Consensus 33 i~~~L~~~GV~~vfg~pG~~~~~l~~al 60 (589)
..+.|++.|++.+|+ ||+....+.+.|
T Consensus 100 ~~~~L~~~Gv~~vf~-pgt~~~~i~~~l 126 (128)
T cd02072 100 VEKRFKEMGFDRVFA-PGTPPEEAIADL 126 (128)
T ss_pred HHHHHHHcCCCEEEC-cCCCHHHHHHHH
Confidence 445566666666665 455555555544
No 419
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=36.74 E-value=2.1e+02 Score=27.25 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHh-cCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhh
Q 007800 223 AAVEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (589)
Q Consensus 223 ~~i~~~~~~L~~-a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~ 301 (589)
..+..|+..|.. ...-++++|... .+.+.+.++|++.|.+.++.- ++| |.+.+... +...
T Consensus 53 ~~L~~A~~~i~~~~~~~ILfVgTk~---~~~~~v~k~A~~~g~~~v~~R------------Wlg---G~LTN~~~-~~~~ 113 (204)
T PRK04020 53 ERIRIAAKFLSRYEPEKILVVSSRQ---YGQKPVQKFAEVVGAKAITGR------------FIP---GTLTNPSL-KGYI 113 (204)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHHhCCeeecCc------------cCC---CcCcCcch-hccC
Confidence 456777777766 344466676433 367899999999998877531 111 22222222 2234
Q ss_pred hcCEEEEeCCCcC
Q 007800 302 SADAYVFVGPIFN 314 (589)
Q Consensus 302 ~aD~vl~lG~~~~ 314 (589)
..|+|+++...-+
T Consensus 114 ~Pdliiv~dp~~~ 126 (204)
T PRK04020 114 EPDVVVVTDPRGD 126 (204)
T ss_pred CCCEEEEECCccc
Confidence 8999999987544
No 420
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=36.50 E-value=1.5e+02 Score=31.31 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=46.7
Q ss_pred HHHHHHHHHH--hcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCce-eeecCCCCCHHHHHHh
Q 007800 224 AVEATADFLN--KAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFI-GTYWGAVSSSFCGEIV 300 (589)
Q Consensus 224 ~i~~~~~~L~--~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~-G~~~g~~~~~~~~~~l 300 (589)
.++++.+.+. ..+|++||.+.+....+..+.+.+..+..++.+.. |++--|..- .+. ..+.+.+
T Consensus 16 ~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~i-------f~~v~p~P~~~~v------~~~~~~~ 82 (377)
T COG1454 16 SLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEV-------FDEVEPEPTIETV------EAGAEVA 82 (377)
T ss_pred hHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEE-------ecCCCCCCCHHHH------HHHHHHH
Confidence 3455555555 35899999999988877888888888888866432 333222211 000 1222333
Q ss_pred --hhcCEEEEeC
Q 007800 301 --ESADAYVFVG 310 (589)
Q Consensus 301 --~~aD~vl~lG 310 (589)
.++|+||.||
T Consensus 83 ~~~~~D~iIalG 94 (377)
T COG1454 83 REFGPDTIIALG 94 (377)
T ss_pred HhcCCCEEEEeC
Confidence 3799999997
No 421
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=36.27 E-value=1e+02 Score=32.63 Aligned_cols=44 Identities=9% Similarity=0.094 Sum_probs=29.7
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
.++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+.
T Consensus 36 ~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~ 81 (395)
T PRK15454 36 AVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMT 81 (395)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEE
Confidence 34455555554 477777777776666667888888888887654
No 422
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=36.18 E-value=1.4e+02 Score=31.30 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=44.0
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh-
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l- 300 (589)
.++++.+.+++ .+|++|+.|......+..+.+.+..+..|+.+.. +.+ + +.||-.-.+ ..+.+.+
T Consensus 11 ~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~-~~~---v-~~~p~~~~v-------~~~~~~~~ 78 (370)
T cd08192 11 AIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAAL-FDE---V-PPNPTEAAV-------EAGLAAYR 78 (370)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-eCC---C-CCCCCHHHH-------HHHHHHHH
Confidence 34555555554 4789999888776555677788877777776543 111 1 233422111 1122222
Q ss_pred -hhcCEEEEeCC
Q 007800 301 -ESADAYVFVGP 311 (589)
Q Consensus 301 -~~aD~vl~lG~ 311 (589)
.++|+||.+|.
T Consensus 79 ~~~~d~IIaiGG 90 (370)
T cd08192 79 AGGCDGVIAFGG 90 (370)
T ss_pred hcCCCEEEEeCC
Confidence 46899999984
No 423
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=36.02 E-value=63 Score=34.25 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=38.4
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~ 491 (589)
.++.+++||+++ +.+++..+==.||.+-...|..+.-..+|+++++.
T Consensus 60 aA~~~aiGAs~a--GaRa~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~ 106 (390)
T PRK08366 60 SAMAACIGASAA--GARAFTATSAQGLALMHEMLHWAAGARLPIVMVDV 106 (390)
T ss_pred HHHHHHHHHHhh--CCCeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEe
Confidence 677899999997 56788777777787777888888889999887775
No 424
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.68 E-value=1.2e+02 Score=28.05 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=59.0
Q ss_pred hcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhh----cCCCCCCCCCCChHHHHHHccCCCCCc
Q 007800 454 AAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEI----HDGPYNVIKNWDYTGLVNAIHNGEGKC 529 (589)
Q Consensus 454 a~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~----~~~~~~~~~~~d~~~la~a~G~~~~~~ 529 (589)
+....+-|+++|-......+..+.... ++++.+..++|.. .++..+ ..+.-.-+...--..+|+.+|+
T Consensus 73 a~~~~~~Iavv~~~~~~~~~~~~~~ll--~~~i~~~~~~~~~-e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl----- 144 (176)
T PF06506_consen 73 AKKYGPKIAVVGYPNIIPGLESIEELL--GVDIKIYPYDSEE-EIEAAIKQAKAEGVDVIVGGGVVCRLARKLGL----- 144 (176)
T ss_dssp CCCCTSEEEEEEESS-SCCHHHHHHHH--T-EEEEEEESSHH-HHHHHHHHHHHTT--EEEESHHHHHHHHHTTS-----
T ss_pred HHhcCCcEEEEecccccHHHHHHHHHh--CCceEEEEECCHH-HHHHHHHHHHHcCCcEEECCHHHHHHHHHcCC-----
Confidence 334568999999999988877776554 7899999998753 332111 1221111233345889999999
Q ss_pred cEEEeCC-HHHHHHHHHHhhh
Q 007800 530 WTAKVRS-EDELTEAMKTATG 549 (589)
Q Consensus 530 ~~~~v~~-~~~l~~al~~a~~ 549 (589)
+++.+.+ .+.++.||++|+.
T Consensus 145 ~~v~i~sg~esi~~Al~eA~~ 165 (176)
T PF06506_consen 145 PGVLIESGEESIRRALEEALR 165 (176)
T ss_dssp EEEESS--HHHHHHHHHHHHH
T ss_pred cEEEEEecHHHHHHHHHHHHH
Confidence 8999986 8999999999974
No 425
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=35.45 E-value=2.1e+02 Score=29.93 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=46.9
Q ss_pred cCCCCCCCCcC-cccccCCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC----CCCeEEecCc
Q 007800 7 MGSTGQPGSAP-APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE----PELNLVGCCN 73 (589)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~----~~i~~v~~~h 73 (589)
|-..|...|+| .|..|. +.-+++++.|+++||+.++-+-|.....+.+.+.+. ..|+|+.-..
T Consensus 15 LrPlT~~~PKPllpI~gk----Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~~ 82 (358)
T COG1208 15 LRPLTDDRPKPLLPIAGK----PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKE 82 (358)
T ss_pred ccccccCCCcccceeCCc----cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEecCC
Confidence 44567778888 666654 566999999999999999999888888888888652 2355554433
No 426
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=35.38 E-value=3.6e+02 Score=27.30 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=28.3
Q ss_pred CCcEEEEEcchhh--cccHHHHHHHHHhCCCeEEEEEeCCch
Q 007800 457 DKRVIACIGDGSF--QVTAQEISTMIRCGQRSIIFLINNGGY 496 (589)
Q Consensus 457 ~~~vv~i~GDGsf--~~~~~el~ta~~~~l~v~ivv~nN~~~ 496 (589)
+-.+|.|.|+|-- .-+++||.-+.+...-++++|+-|+..
T Consensus 79 ~pd~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 79 EPDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred CCCEEEEeCCCCcccccCHHHHHHHHHhcCCceEEEEeCCCh
Confidence 3458888888843 447999998887433257777777776
No 427
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=35.25 E-value=1.1e+02 Score=32.00 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=29.5
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
.++++.+.+.+ .+|++|+.|......+..+.+.+..+..|+.+.
T Consensus 13 ~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~ 58 (374)
T cd08189 13 SLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYA 58 (374)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEE
Confidence 34455455544 478888888877665566778887777787654
No 428
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=35.14 E-value=1.1e+02 Score=25.11 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHHhhhhcC
Q 007800 539 ELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANS 583 (589)
Q Consensus 539 ~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~~~~~~~~~~~ 583 (589)
++++.|+..++ +-.+|+.+.+.++..+....++.+.+.+...+.
T Consensus 5 ~~~~qL~~~f~-~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSd 48 (94)
T cd02974 5 NLKQQLKAYLE-RLENPVELVASLDDSEKSAELLELLEEIASLSD 48 (94)
T ss_pred HHHHHHHHHHH-hCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCC
Confidence 45555555553 456899999999988888889999988876543
No 429
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=35.07 E-value=1.3e+02 Score=32.44 Aligned_cols=155 Identities=8% Similarity=0.101 Sum_probs=80.1
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEE-Ecchhh
Q 007800 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIAC-IGDGSF 469 (589)
Q Consensus 391 i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i-~GDGsf 469 (589)
++-..++.+.-+...-+. ++.=.|-+...........+.+|+..+.--+-.|+ +.|+|. | .++|.||+ ++-=+.
T Consensus 14 ~~g~~~vA~~Lk~~gVe~-iFgiVGipV~el~~aaqalGIk~I~~RnEqaA~yA-A~A~gy-L--t~kpGV~lVvsGPGl 88 (571)
T KOG1185|consen 14 RHGGELVAAVLKAQGVEY-IFGIVGIPVIELAVAAQALGIKFIGTRNEQAAVYA-ASAYGY-L--TGKPGVLLVVSGPGL 88 (571)
T ss_pred ccHHHHHHHHHHHcCceE-EEEEeccchHHHHHHHHHcCCeEeecccHHHHHHH-HHHhhh-h--cCCCeEEEEecCChH
Confidence 444455544444444333 33334544321111111123345554444433333 224443 2 35665554 454588
Q ss_pred cccHHHHHHHHHhCCCeEEEEEeCCchhh-hhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhh
Q 007800 470 QVTAQEISTMIRCGQRSIIFLINNGGYTI-EVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT 548 (589)
Q Consensus 470 ~~~~~el~ta~~~~l~v~ivv~nN~~~~~-~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~ 548 (589)
.+.+..+.++.-+.-|+++| +... +....-+-| ..+|-..+.+.|== ...++.+..++...+++|+
T Consensus 89 ~hal~gv~NA~~n~wPll~I-----gGsa~~~~~~rGaf---Qe~dQvel~rp~~K-----~~~r~~~~~~I~~~i~kA~ 155 (571)
T KOG1185|consen 89 THALAGVANAQMNCWPLLLI-----GGSASTLLENRGAF---QELDQVELFRPLCK-----FVARPTSVRDIPPTIRKAV 155 (571)
T ss_pred HHHHHHhhhhhhccCcEEEE-----ecccchhhhccccc---ccccHHhhhhhhhh-----hccCCCChhhccHHHHHHH
Confidence 99999999998899997765 2222 111112233 33454555554421 3456667776666566555
Q ss_pred h---cCCCCeEEEEEEcC
Q 007800 549 G---EQKDSLCFIEVFVH 563 (589)
Q Consensus 549 ~---~~~~gp~viev~~~ 563 (589)
. .-..|++.||++.|
T Consensus 156 r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 156 RAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred HHHhcCCCCceEEecccc
Confidence 4 23468999999988
No 430
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=34.81 E-value=2.6e+02 Score=24.88 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=47.9
Q ss_pred cchhhHHHHHHHHhhhc--CC-CcEEEEEcchhhcc---cHHHHHHHHH----hCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 439 GSIGWSVGATLGYAQAA--KD-KRVIACIGDGSFQV---TAQEISTMIR----CGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 439 g~mG~~l~~aiGaala~--~~-~~vv~i~GDGsf~~---~~~el~ta~~----~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
..++.++-.|+...... ++ .+.|.++.||.-.. ...++...++ .++.+.+|=+.+. .+
T Consensus 75 T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~-~~----------- 142 (170)
T cd01465 75 TAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDN-YN----------- 142 (170)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCC-cC-----------
Confidence 34556665555433221 11 25678999997543 2344443332 3455444444311 11
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHH
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEA 543 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~a 543 (589)
..-+.++|+.-++ .++.+++.+++.++
T Consensus 143 ---~~~l~~ia~~~~g-----~~~~~~~~~~~~~~ 169 (170)
T cd01465 143 ---EDLMEAIADAGNG-----NTAYIDNLAEARKV 169 (170)
T ss_pred ---HHHHHHHHhcCCc-----eEEEeCCHHHHHhh
Confidence 1136778887777 78899999999865
No 431
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=34.75 E-value=1.2e+02 Score=32.10 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=31.2
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
.++++.+.+.+ .+|++|+.|......+..+.+.+..++.|+.+.
T Consensus 17 ~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~ 62 (382)
T PRK10624 17 AIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYE 62 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEE
Confidence 34555555554 478888888877666678888888888887653
No 432
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=34.74 E-value=1.2e+02 Score=31.50 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=28.2
Q ss_pred HHHHHHHHHh-cCCCEEEeCccc-chhhHHHHHHHHHHHhCCceE
Q 007800 225 VEATADFLNK-AVKPVLVGGPNI-RVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 225 i~~~~~~L~~-a~rpviv~G~g~-~~~~~~~~l~~lae~~~~Pv~ 267 (589)
++++.+.+++ .+|++|+.|... ...+..+.+.+..++.|+.+.
T Consensus 14 l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~ 58 (357)
T cd08181 14 VEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYE 58 (357)
T ss_pred HHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEE
Confidence 3444444443 488899988877 435566788887777777543
No 433
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=34.33 E-value=1.4e+02 Score=31.64 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHHHHHHh-cCCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 225 VEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 225 i~~~~~~L~~-a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
++++.+.+++ .+|++|+.|......+..+.+.+..++.++.+.
T Consensus 11 l~~l~~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~ 54 (386)
T cd08191 11 RRQLPRLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVE 54 (386)
T ss_pred HHHHHHHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEE
Confidence 3444444544 378899998877665677788887787787654
No 434
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=34.09 E-value=2.6e+02 Score=24.33 Aligned_cols=87 Identities=18% Similarity=0.111 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCC--CEEEeCcccchh-----------hHHHHHHHHHHHhCCceEEcc---CCccCCCCC-----
Q 007800 221 LEAAVEATADFLNKAVK--PVLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMP---SGKGLVPEH----- 279 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~r--pviv~G~g~~~~-----------~~~~~l~~lae~~~~Pv~tt~---~~~g~~~~~----- 279 (589)
..+.++-+..++..... -|++.+.|+... +..+....|.+.++++++... ..||+.+++
T Consensus 16 ~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~i~l~vC~~aa~~RGl~~~~~~~~~ 95 (127)
T TIGR03012 16 ASSAYQFAQALLAKGHEIVRVFFYQDGVLNANNLVSPASDEFDLVAAWQQLAQEHQVDLVVCVAAALRRGVVDEEEASRL 95 (127)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEehHHHHhhccCCCCccccccHHHHHHHHHHhcCCEEEeeHHHHHHcCCCchhHHhhc
Confidence 34556666666666554 488899888543 235678888888899888754 367877651
Q ss_pred ----CCCceeeecCCCCCHHHHHHhhhcCEEEEe
Q 007800 280 ----HPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (589)
Q Consensus 280 ----~pl~~G~~~g~~~~~~~~~~l~~aD~vl~l 309 (589)
..+..|.- +.+-....+++.++|.||.+
T Consensus 96 ~~~~~~l~~~~~--i~~l~eL~~~~~~aDrvi~F 127 (127)
T TIGR03012 96 QISHGNLAPGFE--LSGLGELAEAALTADRLVQF 127 (127)
T ss_pred ccccccccCCeE--EcCHHHHHHHHHhCCeeEeC
Confidence 13444432 23445788899999999864
No 435
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=34.02 E-value=1.5e+02 Score=31.19 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=44.4
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh-
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l- 300 (589)
.++++.+.+.+ .+|++|+.|......+..+.+.+..+..++.+.. +.+ + +.+|-.-.+ ..+.+.+
T Consensus 15 ~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~-f~~---v-~~~p~~~~v-------~~~~~~~~ 82 (377)
T cd08176 15 AIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVI-YDG---V-KPNPTITNV-------KDGLAVFK 82 (377)
T ss_pred HHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEE-eCC---C-CCCCCHHHH-------HHHHHHHH
Confidence 34555555554 3788888887776556788888888887876532 111 1 123321111 1222223
Q ss_pred -hhcCEEEEeCC
Q 007800 301 -ESADAYVFVGP 311 (589)
Q Consensus 301 -~~aD~vl~lG~ 311 (589)
.++|+||.+|.
T Consensus 83 ~~~~D~IIavGG 94 (377)
T cd08176 83 KEGCDFIISIGG 94 (377)
T ss_pred hcCCCEEEEeCC
Confidence 36899999984
No 436
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=33.79 E-value=1.8e+02 Score=29.43 Aligned_cols=100 Identities=17% Similarity=0.058 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCC--CC-----eEEecCch------------h-HHHHhhhhhhhc
Q 007800 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP--EL-----NLVGCCNE------------L-NAGYAADGYARS 87 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~--~i-----~~v~~~hE------------~-~A~~~A~gyar~ 87 (589)
...+.+++.|++.|-=++||.=++....+.|+....+ +. ..+..-.+ . .++.........
T Consensus 45 ~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l 124 (291)
T TIGR00274 45 AAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHL 124 (291)
T ss_pred HHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCC
Confidence 4567788899888878888887676666777642211 11 11111111 1 111111222233
Q ss_pred cCceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCc
Q 007800 88 RGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (589)
Q Consensus 88 tg~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 127 (589)
+..=++++.|..| .-+.+.++..|...+.|++.||+.+..
T Consensus 125 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 125 TKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3342333333444 456778888899999999999986543
No 437
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=33.21 E-value=1.5e+02 Score=30.68 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=27.7
Q ss_pred HHHHHHHHh-cCCCEEEeCcccchhhHHHHHHHHHHHhCCce
Q 007800 226 EATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (589)
Q Consensus 226 ~~~~~~L~~-a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv 266 (589)
+++.+.+++ .+|++|+.|.+... ...+.+.+..+..++.+
T Consensus 12 ~~l~~~~~~~~~r~livt~~~~~~-~~~~~v~~~L~~~~i~~ 52 (351)
T cd08170 12 DELGEYLARLGKRALIIADEFVLD-LVGAKIEESLAAAGIDA 52 (351)
T ss_pred HHHHHHHHHhCCeEEEEECHHHHH-HHHHHHHHHHHhCCCeE
Confidence 344444443 58999998887765 67777787777777765
No 438
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=32.97 E-value=47 Score=34.84 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhh----HHHHHHHHHHHhC
Q 007800 226 EATADFLNKAVKPVLVGGPNIRVAK----AQKAFIELADATG 263 (589)
Q Consensus 226 ~~~~~~L~~a~rpviv~G~g~~~~~----~~~~l~~lae~~~ 263 (589)
..+++.|+++++|+||+|.++.... ....+..+++..+
T Consensus 212 ~~~~~~L~~ak~p~Ii~G~~~~~~~~~~~~~~~~~~l~~~~~ 253 (366)
T cd02774 212 HLFCKQLKKSKKPLIIIGSSFSLRKNYSFIISKLKNFSSNNE 253 (366)
T ss_pred hHHHHHHhcCCCCEEEEChHHhCCCCHHHHHHHHHHHHHhhc
Confidence 3456788999999999999997532 3445666666643
No 439
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=32.45 E-value=1.4e+02 Score=31.52 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=29.9
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
.++++.+.+.+ .+|++|+.|......+..+.+.+..+..++.+.
T Consensus 15 ~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~ 60 (377)
T cd08188 15 ALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYV 60 (377)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEE
Confidence 34455555554 478899988777665567778887777777654
No 440
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=32.41 E-value=1.1e+02 Score=32.58 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=27.0
Q ss_pred HHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 231 FLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 231 ~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
.+...+|++|+.|......+..+.+.+..+..|+.+.
T Consensus 17 ~~~~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~ 53 (398)
T cd08178 17 DLKGKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETE 53 (398)
T ss_pred HhcCCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEE
Confidence 3445689999988877665677788888877787654
No 441
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=32.34 E-value=1.4e+02 Score=29.54 Aligned_cols=68 Identities=12% Similarity=-0.028 Sum_probs=48.9
Q ss_pred cEEEEEcchhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCC
Q 007800 459 RVIACIGDGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRS 536 (589)
Q Consensus 459 ~vv~i~GDGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~ 536 (589)
-|+-+++|-+++| .++-+-.|.+.++|+-++.+..++.- +.+-+.+=|+ .|..|+.
T Consensus 170 lV~t~t~d~~~qyi~~MNciFaAqKq~I~Idv~~l~~~s~~-----------------LqQa~D~TGG-----~YL~v~~ 227 (314)
T KOG2487|consen 170 LVFTLTRDRALQYIPYMNCIFAAQKQNIPIDVVSLGGDSGF-----------------LQQACDITGG-----DYLHVEK 227 (314)
T ss_pred EEEEechHHHhhhhhHHHHHHHHHhcCceeEEEEecCCchH-----------------HHHHHhhcCC-----eeEecCC
Confidence 4777899999999 36666677779999999988666222 3334556666 6777777
Q ss_pred HHHHHHHHHHhh
Q 007800 537 EDELTEAMKTAT 548 (589)
Q Consensus 537 ~~~l~~al~~a~ 548 (589)
++.|-+-|-..+
T Consensus 228 ~~gLLqyLlt~~ 239 (314)
T KOG2487|consen 228 PDGLLQYLLTLL 239 (314)
T ss_pred cchHHHHHHHHh
Confidence 777777666665
No 442
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=32.30 E-value=2.5e+02 Score=25.77 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
+...+++++++|.+++| ++++|.|....-+.....+| .++|.++..
T Consensus 19 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~ 64 (179)
T cd05005 19 DEEELDKLISAILNAKR-IFVYGAGRSGLVAKAFAMRL-MHLGLNVYV 64 (179)
T ss_pred CHHHHHHHHHHHHhCCe-EEEEecChhHHHHHHHHHHH-HhCCCeEEE
Confidence 35678999999999965 78888877643233333333 356887776
No 443
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=32.23 E-value=46 Score=33.56 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccC
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~ 271 (589)
++.++++++++|+++++.|++.|.|... .-|||-+-+..
T Consensus 5 ~~~~l~~l~~~i~~~~~ivvlTGAGiS~------------~SGIPdFR~~~ 43 (285)
T PRK05333 5 DPAALDALQDFVERHPRLFVLTGAGIST------------DSGIPDYRDRN 43 (285)
T ss_pred cHHHHHHHHHHHHhCCcEEEEeCCcccc------------ccCCCcccCCC
Confidence 4678889999999999999999999986 35788776444
No 444
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=31.97 E-value=48 Score=27.00 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=19.3
Q ss_pred hhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCc
Q 007800 301 ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (589)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~ 337 (589)
.++|++|++|+++..... ..+.|++.+|...
T Consensus 39 ~dAeLviV~G~sipnd~~------l~GKkv~i~d~~~ 69 (103)
T COG3925 39 NDAELVIVFGSSIPNDSA------LNGKKVWIGDIER 69 (103)
T ss_pred CcccEEEEeccccCCCcc------ccCceEEEecHHH
Confidence 489999999987653222 2234566555543
No 445
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=31.80 E-value=2.6e+02 Score=28.33 Aligned_cols=101 Identities=21% Similarity=0.022 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCC-------CCeEEecCchhHHHH------------hhhhhhh-c
Q 007800 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAGY------------AADGYAR-S 87 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~-------~i~~v~~~hE~~A~~------------~A~gyar-~ 87 (589)
...+.+++.|++.|-=++||.=++....++|+...-+ .+..+..-.+.+... ..+=.+. .
T Consensus 50 ~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l 129 (299)
T PRK05441 50 AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINL 129 (299)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCC
Confidence 4467788889888888888887777777777654222 122222211111111 1111111 3
Q ss_pred cCceEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCcc
Q 007800 88 RGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 88 tg~~v~~~t~GpG~~-n~~~~l~~A~~~~~PllvI~g~~~~~ 128 (589)
+..-+++..|..|-+ +.+.++..|...+.+++.||+.+...
T Consensus 130 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~ 171 (299)
T PRK05441 130 TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSP 171 (299)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 334344444566654 57788888999999999999875543
No 446
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.56 E-value=76 Score=28.77 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=28.4
Q ss_pred cCCC-EEEeCcccchh----hHHHHHHHHHHHhCCceEEccCCc
Q 007800 235 AVKP-VLVGGPNIRVA----KAQKAFIELADATGYPIAIMPSGK 273 (589)
Q Consensus 235 a~rp-viv~G~g~~~~----~~~~~l~~lae~~~~Pv~tt~~~~ 273 (589)
.+.| ++++|.-+.-. -..++..+||+++|+|.+.|....
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 4666 56667665432 236788999999999999988764
No 447
>PRK15482 transcriptional regulator MurR; Provisional
Probab=31.43 E-value=1.2e+02 Score=30.41 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l 300 (589)
+.+.+++++++|.+|+| +.+.|.|.... ....+....-++|.++....... ........+
T Consensus 121 d~~~l~~~~~~i~~A~~-I~i~G~G~S~~-~A~~l~~~l~~~g~~~~~~~d~~------------------~~~~~~~~~ 180 (285)
T PRK15482 121 DYARLQKIIEVISKAPF-IQITGLGGSAL-VGRDLSFKLMKIGYRVACEADTH------------------VQATVSQAL 180 (285)
T ss_pred CHHHHHHHHHHHHhCCe-eEEEEeChhHH-HHHHHHHHHHhCCCeeEEeccHh------------------HHHHHHhcC
Q ss_pred hhcCEEEEe
Q 007800 301 ESADAYVFV 309 (589)
Q Consensus 301 ~~aD~vl~l 309 (589)
.+-|++|++
T Consensus 181 ~~~Dv~i~i 189 (285)
T PRK15482 181 KKGDVQIAI 189 (285)
T ss_pred CCCCEEEEE
No 448
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=31.30 E-value=1.2e+02 Score=32.62 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEc
Q 007800 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (589)
Q Consensus 223 ~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt 269 (589)
..+.+++..+.+..+.+.++.....+..+.+++..++++.++|++..
T Consensus 110 TtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~ 156 (437)
T PRK00771 110 TTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGD 156 (437)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEec
Confidence 34556666666655566666667777778999999999999998753
No 449
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=31.13 E-value=1.2e+02 Score=28.87 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=22.0
Q ss_pred CcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 007800 458 KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (589)
Q Consensus 458 ~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~ 494 (589)
|-+|++.|+|+.+..+-+.....+....+++||-|+.
T Consensus 3 ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~ 39 (200)
T PRK05647 3 RIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP 39 (200)
T ss_pred eEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc
Confidence 4578889999888765444332223344555555654
No 450
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=30.89 E-value=93 Score=34.94 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=55.5
Q ss_pred cEEEEEcchhhc--------ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCcc
Q 007800 459 RVIACIGDGSFQ--------VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCW 530 (589)
Q Consensus 459 ~vv~i~GDGsf~--------~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~ 530 (589)
--|++-||++|. |++.+|-.-. ----+.||.||+..--. +..+.+. .+=-..+|+++++ .
T Consensus 403 m~ILiHGDaaFAgQGVVyET~hls~LP~Yt--T~GTvHvVvNNQIgFTT----DPR~aRS-spYcTDvar~v~a-----P 470 (1017)
T KOG0450|consen 403 MGILIHGDAAFAGQGVVYETFHLSDLPSYT--TGGTVHVVVNNQIGFTT----DPRFARS-SPYCTDVARVVNA-----P 470 (1017)
T ss_pred EEEEEecchhhccCceEEEeeccccCCCcc--cCCeEEEEEcccccccc----CcccccC-CCCchhHHHHhCC-----C
Confidence 467889999994 2333332111 12246778888742110 1122221 1123568888888 5
Q ss_pred EEEe--CCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 531 TAKV--RSEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 531 ~~~v--~~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
-+.| +|+|.+--+++-|.+ ..-..=+||++.+-+
T Consensus 471 IFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyR 508 (1017)
T KOG0450|consen 471 IFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYR 508 (1017)
T ss_pred eEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEe
Confidence 5555 689888777776665 234678999999864
No 451
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=30.71 E-value=1.2e+02 Score=30.22 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l 300 (589)
+...+++++++|.+++| +.+.|.|....-+......|. ++|.++....... ........+
T Consensus 114 ~~~~l~~~~~~i~~a~~-I~i~G~G~s~~~A~~~~~~l~-~~g~~~~~~~d~~------------------~~~~~~~~~ 173 (278)
T PRK11557 114 SEEKLHECVTMLRSARR-IILTGIGASGLVAQNFAWKLM-KIGINAVAERDMH------------------ALLATVQAL 173 (278)
T ss_pred CHHHHHHHHHHHhcCCe-EEEEecChhHHHHHHHHHHHh-hCCCeEEEcCChH------------------HHHHHHHhC
Q ss_pred hhcCEEEEe
Q 007800 301 ESADAYVFV 309 (589)
Q Consensus 301 ~~aD~vl~l 309 (589)
.+-|++|++
T Consensus 174 ~~~Dv~I~i 182 (278)
T PRK11557 174 SPDDLLLAI 182 (278)
T ss_pred CCCCEEEEE
No 452
>PRK09330 cell division protein FtsZ; Validated
Probab=30.66 E-value=1.4e+02 Score=31.55 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccch-hhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCce-eeecCCCCCHHHHH
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFI-GTYWGAVSSSFCGE 298 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~-~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~-G~~~g~~~~~~~~~ 298 (589)
.++..+++.+.|..+...+|++|-|... +++...+.+++++.+++++.-.. .|+.. |...-........+
T Consensus 84 aee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt--------~PF~fEG~~r~~nA~~gL~~ 155 (384)
T PRK09330 84 AEESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVT--------KPFSFEGKKRMKQAEEGIEE 155 (384)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEe--------cCccccchhHHHHHHHHHHH
Confidence 3455677777888888888888866543 56777899999999988775222 12211 10000001123445
Q ss_pred HhhhcCEEEEeC
Q 007800 299 IVESADAYVFVG 310 (589)
Q Consensus 299 ~l~~aD~vl~lG 310 (589)
+.+.+|.+|++-
T Consensus 156 L~~~~D~vIvi~ 167 (384)
T PRK09330 156 LRKHVDTLIVIP 167 (384)
T ss_pred HHHHCCEEEEEe
Confidence 556799999884
No 453
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.53 E-value=2.5e+02 Score=29.80 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=55.9
Q ss_pred CHHHHHHHHHhhC-----CCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcc
Q 007800 392 RVNVLFKHIQDML-----SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD 466 (589)
Q Consensus 392 ~~~~~~~~L~~~l-----~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GD 466 (589)
.+..++..+.+.+ ....++++..|+.-.. ++-||++|...|.||.+++-++- ..+..|+++.|+
T Consensus 169 ~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~I-------D~VR~isN~SSG~~G~aiA~~l~----~~Ga~V~~v~~~ 237 (399)
T PRK05579 169 EPEEIVAAAERALSPKDLAGKRVLITAGPTREPI-------DPVRYITNRSSGKMGYALARAAA----RRGADVTLVSGP 237 (399)
T ss_pred CHHHHHHHHHHHhhhcccCCCEEEEeCCCccccc-------cceeeeccCCcchHHHHHHHHHH----HCCCEEEEeCCC
Confidence 4556666555444 3345566544433211 34569999998889888876653 345678888877
Q ss_pred hhh----------cccHHHHHHHHHhCCCeEEEEEeCCchh
Q 007800 467 GSF----------QVTAQEISTMIRCGQRSIIFLINNGGYT 497 (589)
Q Consensus 467 Gsf----------~~~~~el~ta~~~~l~v~ivv~nN~~~~ 497 (589)
.+. .-+..++..++....+-.=+++||.+..
T Consensus 238 ~~~~~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 238 VNLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred ccccCCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEccccc
Confidence 542 1246677666654333334566776644
No 454
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=30.50 E-value=1.5e+02 Score=31.31 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=24.1
Q ss_pred cCCCEEEeCcccch-hhHHHHHHHHHHHhCCceE
Q 007800 235 AVKPVLVGGPNIRV-AKAQKAFIELADATGYPIA 267 (589)
Q Consensus 235 a~rpviv~G~g~~~-~~~~~~l~~lae~~~~Pv~ 267 (589)
.+|++|+.|..... .+..+.+.+..++.|+.+.
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~ 59 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYV 59 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEE
Confidence 37888888877643 4556788888888887654
No 455
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.49 E-value=2.4e+02 Score=25.79 Aligned_cols=89 Identities=13% Similarity=0.026 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCcchHHHHHhhhc---CCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcch-HHHH
Q 007800 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG-LSVL 105 (589)
Q Consensus 30 a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~---~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~-~n~~ 105 (589)
-+.+++.|.+.+-=++||.-++. .+-..+.. .-++.++... |.. ....+..-++++-|.+|- -..+
T Consensus 20 ~~~~~~~l~~a~~I~i~G~G~S~--~~A~~~~~~l~~~g~~~~~~~-~~~-------~~~~~~~Dv~I~iS~sG~t~~~i 89 (179)
T TIGR03127 20 LDKLADKIIKAKRIFVAGAGRSG--LVGKAFAMRLMHLGFNVYVVG-ETT-------TPSIKKGDLLIAISGSGETESLV 89 (179)
T ss_pred HHHHHHHHHhCCEEEEEecCHHH--HHHHHHHHHHHhCCCeEEEeC-Ccc-------cCCCCCCCEEEEEeCCCCcHHHH
Confidence 35677888887766666664443 33332221 1245444432 211 123334444444455554 4567
Q ss_pred HHHHHhhhcCCcEEEEeCCCCcc
Q 007800 106 NAIAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~ 128 (589)
..+-.|...++|+|.||+.....
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCc
Confidence 78888999999999999875443
No 456
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=30.43 E-value=1.9e+02 Score=30.46 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=26.1
Q ss_pred HHHHHHHHh-cCCCEEEeCcccc-hhhHHHHHHHHHHHhCCceE
Q 007800 226 EATADFLNK-AVKPVLVGGPNIR-VAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 226 ~~~~~~L~~-a~rpviv~G~g~~-~~~~~~~l~~lae~~~~Pv~ 267 (589)
+++.+.+++ .+|++|+.|.... ..+..+.+.+..+..|+-+.
T Consensus 18 ~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~ 61 (382)
T cd08187 18 SELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVV 61 (382)
T ss_pred HHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEE
Confidence 334344433 5899999886544 34556777777777776543
No 457
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=30.09 E-value=1.2e+02 Score=30.57 Aligned_cols=35 Identities=6% Similarity=0.003 Sum_probs=22.5
Q ss_pred CCcEEEEEcchhhcccHHHHHHHHH---hCCCeEEEEEeCC
Q 007800 457 DKRVIACIGDGSFQVTAQEISTMIR---CGQRSIIFLINNG 494 (589)
Q Consensus 457 ~~~vv~i~GDGsf~~~~~el~ta~~---~~l~v~ivv~nN~ 494 (589)
.|-+|++.|-|+ +++.|..+.+ .+..+..||-||.
T Consensus 85 ~ki~vl~Sg~g~---nl~~l~~~~~~g~l~~~i~~visn~~ 122 (280)
T TIGR00655 85 KRVAILVSKEDH---CLGDLLWRWYSGELDAEIALVISNHE 122 (280)
T ss_pred cEEEEEEcCCCh---hHHHHHHHHHcCCCCcEEEEEEEcCh
Confidence 455777777765 4556655554 3456777777776
No 458
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=30.01 E-value=1.4e+02 Score=25.77 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccC
Q 007800 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (589)
Q Consensus 225 i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~ 271 (589)
.++..+.|++.+-.++++...+......+.+..+|+..++|++....
T Consensus 35 ~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~t 81 (122)
T PRK04175 35 TNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPS 81 (122)
T ss_pred HHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECC
No 459
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=29.98 E-value=5.9e+02 Score=25.70 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=40.3
Q ss_pred cCCCCCCCCcC-cccccCCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhh
Q 007800 7 MGSTGQPGSAP-APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLI 61 (589)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~ 61 (589)
|.+-|...|+| .|+.| .+.-+++++.|.+.||+.|+-+-|.....+.+.+.
T Consensus 17 L~PlT~~~PKpLvpV~g----kPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~ 68 (297)
T TIGR01105 17 MLPATKAIPKEMLPIVD----KPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFD 68 (297)
T ss_pred cCcccCCCCceeeEECC----EEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHh
Confidence 44456677788 66655 46789999999999999999999987777777664
No 460
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=29.96 E-value=60 Score=27.03 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=21.7
Q ss_pred CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCC
Q 007800 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272 (589)
Q Consensus 236 ~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~ 272 (589)
=+.+|+.|+.. -.+.+.++|+..++||+.|+..
T Consensus 62 i~~iIltg~~~----~~~~v~~la~~~~i~vi~t~~d 94 (105)
T PF07085_consen 62 IACIILTGGLE----PSEEVLELAKELGIPVISTPYD 94 (105)
T ss_dssp ECEEEEETT--------HHHHHHHHHHT-EEEE-SS-
T ss_pred CCEEEEeCCCC----CCHHHHHHHHHCCCEEEEECCC
Confidence 46677777533 4678999999999999998753
No 461
>PRK10586 putative oxidoreductase; Provisional
Probab=29.88 E-value=2.1e+02 Score=30.01 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=24.5
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
.++++.+.+++ .+|++|+.|..... .....+.+..+..++
T Consensus 21 a~~~l~~~~~~~g~~~~lvv~g~~~~~-~~~~~~~~~l~~~~~ 62 (362)
T PRK10586 21 SIDHLHDFFTDEQLSRAVWIYGERAIA-AAQPYLPPAFELPGA 62 (362)
T ss_pred HHHHHHHHHHhcCCCeEEEEEChHHHH-HHHHHHHHHHHHcCC
Confidence 55667777765 37888888865543 234455555555554
No 462
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=29.43 E-value=1.7e+02 Score=30.62 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=44.0
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh-
Q 007800 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (589)
Q Consensus 224 ~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l- 300 (589)
.++++.+.+++ .+|++|+.|.........+.+.+..++.++.+.. +.+ .+.||-.-.+ ..+.+.+
T Consensus 10 ~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~-~~~----~~~~p~~~~v-------~~~~~~~~ 77 (370)
T cd08551 10 AIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVI-FDG----VEPNPTLSNV-------DAAVAAYR 77 (370)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEE-ECC----CCCCCCHHHH-------HHHHHHHH
Confidence 34566666664 4789999888776556677777777777765532 111 1223322111 1122222
Q ss_pred -hhcCEEEEeCC
Q 007800 301 -ESADAYVFVGP 311 (589)
Q Consensus 301 -~~aD~vl~lG~ 311 (589)
.++|+||.+|.
T Consensus 78 ~~~~d~IiaiGG 89 (370)
T cd08551 78 EEGCDGVIAVGG 89 (370)
T ss_pred hcCCCEEEEeCC
Confidence 36899999985
No 463
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=29.32 E-value=48 Score=36.66 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeee--cCCCC
Q 007800 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY--WGAVS 292 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a------~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~--~g~~~ 292 (589)
-+++++.+++.|++. ++.+++.|..... ....+.+|...+|.|-+.+.... - +.+...|.. .|..+
T Consensus 81 WdeAl~~ia~~l~~~~~~~g~~~i~~~~g~~~~~--~~~~~~r~~~~~Gs~~~~~~~~~--c--~~~~~~~~~~~~g~~~ 154 (523)
T cd02757 81 WDEALDTIADKIRALRKENEPHKIMLHRGRYGHN--NSILYGRFTKMIGSPNNISHSSV--C--AESEKFGRYYTEGGWD 154 (523)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCc--cchHHHHHHHHhCcCCCcCCcch--h--hhHHHHHHHHHhCCCC
Confidence 456777777776643 2334555554332 22367889989998754322110 0 000001110 01111
Q ss_pred CHHHHHHhhhcCEEEEeCCCcCCcccccc--c----ccCCCCceEEEcCCcee
Q 007800 293 SSFCGEIVESADAYVFVGPIFNDYSSVGY--S----LLIKKEKAIIVQPHRVT 339 (589)
Q Consensus 293 ~~~~~~~l~~aD~vl~lG~~~~~~~~~~~--~----~~~~~~~~i~id~d~~~ 339 (589)
. ...-+.+||+||++|+..-+.....+ . ...++.|+|.||+....
T Consensus 155 ~--~~~D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ 205 (523)
T cd02757 155 Y--NSYDYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSN 205 (523)
T ss_pred C--CCcchhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCCh
Confidence 0 11235899999999976533221111 1 11246799999987654
No 464
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=29.22 E-value=4.1e+02 Score=23.59 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=44.8
Q ss_pred CCcEEEEEcchhhcccHHHHHHHHH----hCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEE
Q 007800 457 DKRVIACIGDGSFQVTAQEISTMIR----CGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA 532 (589)
Q Consensus 457 ~~~vv~i~GDGsf~~~~~el~ta~~----~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~ 532 (589)
..+.|+++.||.. -...++....+ .++++..|.+-.+. ...-...+|+.=|+ .++
T Consensus 99 ~~~~iillTDG~~-~~~~~~~~~~~~~~~~~i~i~~i~~g~~~---------------~~~~l~~ia~~~gG-----~~~ 157 (171)
T cd01461 99 SVPQIILLTDGEV-TNESQILKNVREALSGRIRLFTFGIGSDV---------------NTYLLERLAREGRG-----IAR 157 (171)
T ss_pred CccEEEEEeCCCC-CCHHHHHHHHHHhcCCCceEEEEEeCCcc---------------CHHHHHHHHHcCCC-----eEE
Confidence 3579999999973 33455544443 36676666664321 11236778888888 899
Q ss_pred EeCCHHHHHHHHH
Q 007800 533 KVRSEDELTEAMK 545 (589)
Q Consensus 533 ~v~~~~~l~~al~ 545 (589)
.+.+.+++.+-+.
T Consensus 158 ~~~~~~~~~~~~~ 170 (171)
T cd01461 158 RIYETDDIESQLL 170 (171)
T ss_pred EecChHHHHHHhc
Confidence 9999999887653
No 465
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=29.14 E-value=1e+02 Score=33.38 Aligned_cols=88 Identities=20% Similarity=0.138 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHH-hCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHH
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~-~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~ 299 (589)
-+++++.+++.|++.+.-+.+.|.+....+....+.+|++. ++.+-+... +...+.. .+... +..+. .. +-
T Consensus 71 WdeAl~~ia~~l~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~-~~~~~~~----~~~~~-~~~~~-~~-~d 142 (472)
T cd02771 71 WNEALDVAAARLKEAKDKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHR-ARRLIAE----ILRNG-PIYIP-SL-RD 142 (472)
T ss_pred HHHHHHHHHHHHHHhhhhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcc-hhhhhhh----hhccc-CCCCC-CH-HH
Confidence 46788999998888763344444443333344567788875 565443211 1100000 00000 11111 12 33
Q ss_pred hhhcCEEEEeCCCcCCc
Q 007800 300 VESADAYVFVGPIFNDY 316 (589)
Q Consensus 300 l~~aD~vl~lG~~~~~~ 316 (589)
+.++|+||++|+.+.+.
T Consensus 143 i~~ad~il~~G~n~~~~ 159 (472)
T cd02771 143 IESADAVLVLGEDLTQT 159 (472)
T ss_pred HHhCCEEEEEeCCcccc
Confidence 57999999999876543
No 466
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=29.04 E-value=1.5e+02 Score=27.08 Aligned_cols=55 Identities=20% Similarity=0.372 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCC
Q 007800 222 EAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE 278 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rp--viv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~ 278 (589)
++.+.++.+...+-.|. ++++|+-.. ....+++++|-|.+|+||+.-.| -|.+|+
T Consensus 126 EE~laEAVkAV~rLpRv~iLVLAGslMG-GkIteaVk~lr~~hgI~VISL~M-~GSVpd 182 (218)
T COG1707 126 EEELAEAVKAVARLPRVGILVLAGSLMG-GKITEAVKELREEHGIPVISLNM-FGSVPD 182 (218)
T ss_pred hHHHHHHHHHHhccccceeEEEeccccc-chHHHHHHHHHHhcCCeEEEecc-CCCCcc
Confidence 34556666655554454 444554433 35788999999999999997444 244555
No 467
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=28.81 E-value=39 Score=36.85 Aligned_cols=113 Identities=16% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------cCCCEEEeCcccchhhHHHHHH-HHHHHhCCceEE--ccCCccCCCCCCCCceeeecCCCC
Q 007800 222 EAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFI-ELADATGYPIAI--MPSGKGLVPEHHPHFIGTYWGAVS 292 (589)
Q Consensus 222 ~~~i~~~~~~L~~------a~rpviv~G~g~~~~~~~~~l~-~lae~~~~Pv~t--t~~~~g~~~~~~pl~~G~~~g~~~ 292 (589)
+++++.+++.|++ .+.-.++.|.+........... +|+..+|.+.+. +....+.....+...+|. +
T Consensus 76 deAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~G~-----~ 150 (477)
T cd02759 76 DEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTTGF-----G 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhhcc-----C
Q ss_pred CHHHHHHhhhcCEEEEeCCCcCCccc-ccccccC----CCCceEEEcCCcee
Q 007800 293 SSFCGEIVESADAYVFVGPIFNDYSS-VGYSLLI----KKEKAIIVQPHRVT 339 (589)
Q Consensus 293 ~~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~----~~~~~i~id~d~~~ 339 (589)
......-+.+||+||++|+.+.+... ..+..+. ++.++|.||+....
T Consensus 151 ~~~~~~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ 202 (477)
T cd02759 151 LGYDEPDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTW 202 (477)
T ss_pred CCCCchhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCCh
No 468
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.70 E-value=1.2e+02 Score=30.42 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l 300 (589)
+++.+++++++|.+|+|..++-++.... ....+..-..++|.++.. ++..|-.. .....+
T Consensus 116 ~~~~l~~av~~L~~A~rI~~~G~g~S~~--vA~~~~~~l~~ig~~~~~-------~~d~~~~~-----------~~~~~~ 175 (281)
T COG1737 116 DEEALERAVELLAKARRIYFFGLGSSGL--VASDLAYKLMRIGLNVVA-------LSDTHGQL-----------MQLALL 175 (281)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEechhHH--HHHHHHHHHHHcCCceeE-------ecchHHHH-----------HHHHhC
Q ss_pred hhcCEEEEe
Q 007800 301 ESADAYVFV 309 (589)
Q Consensus 301 ~~aD~vl~l 309 (589)
.+-|++|++
T Consensus 176 ~~~Dv~i~i 184 (281)
T COG1737 176 TPGDVVIAI 184 (281)
T ss_pred CCCCEEEEE
No 469
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=28.60 E-value=51 Score=30.50 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=14.5
Q ss_pred HHHHHhhhcCEEEEeCCCcC
Q 007800 295 FCGEIVESADAYVFVGPIFN 314 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~ 314 (589)
.+.+.+++||++|++|+++.
T Consensus 156 ~~~~~~~~~Dl~lviGTSl~ 175 (178)
T PF02146_consen 156 EAIEDAEEADLLLVIGTSLQ 175 (178)
T ss_dssp HHHHHHHH-SEEEEESS-ST
T ss_pred HHHHHHHcCCEEEEEccCcE
Confidence 45557789999999998764
No 470
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=28.49 E-value=90 Score=34.63 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=26.6
Q ss_pred hhhcCEEEEeCCCcCCccccccc------c----cCCCCceEEEcCCceee
Q 007800 300 VESADAYVFVGPIFNDYSSVGYS------L----LIKKEKAIIVQPHRVTV 340 (589)
Q Consensus 300 l~~aD~vl~lG~~~~~~~~~~~~------~----~~~~~~~i~id~d~~~~ 340 (589)
+.+||+||++|+...+.....+. . ..++.++|.||+.....
T Consensus 154 ~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~t 204 (539)
T cd02762 154 IDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTET 204 (539)
T ss_pred hhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchh
Confidence 58999999999876544221111 1 12456899999876543
No 471
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=28.46 E-value=4.5e+02 Score=24.04 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCEEEecCCcchHHHHHh----hhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDH----LIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 31 ~~i~~~L~~~GV~~vfg~pG~~~~~l~~a----l~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
+.+++.|.+.+-=++||+-++ ..+-.. |.+ -++.++...+ . .....+.. .+++.+...-..+.+
T Consensus 24 ~~~~~~i~~a~~I~i~G~G~S--~~~A~~~~~~l~~-~g~~~~~~~~-~-------~~~~~~~~D~vI~iS~sG~t~~~i 92 (179)
T cd05005 24 DKLISAILNAKRIFVYGAGRS--GLVAKAFAMRLMH-LGLNVYVVGE-T-------TTPAIGPGDLLIAISGSGETSSVV 92 (179)
T ss_pred HHHHHHHHhCCeEEEEecChh--HHHHHHHHHHHHh-CCCeEEEeCC-C-------CCCCCCCCCEEEEEcCCCCcHHHH
Confidence 557777877766667776333 233332 322 2555555432 1 11223444 455555444556778
Q ss_pred HHHHHhhhcCCcEEEEeCCCCcc
Q 007800 106 NAIAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~ 128 (589)
..+-.|...++|+|.||+.....
T Consensus 93 ~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 93 NAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCc
Confidence 88888999999999999875443
No 472
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=28.22 E-value=1.2e+02 Score=35.62 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=26.6
Q ss_pred HhhhcCEEEEeCCCcCCccccccccc------CCCCceEEEcCCcee
Q 007800 299 IVESADAYVFVGPIFNDYSSVGYSLL------IKKEKAIIVQPHRVT 339 (589)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~------~~~~~~i~id~d~~~ 339 (589)
-+.+||+||++|+...+.....+..+ .++.|+|.||+....
T Consensus 203 Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ 249 (830)
T PRK13532 203 DIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHR 249 (830)
T ss_pred HHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCc
Confidence 35899999999987654432222111 245789999986543
No 473
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=28.11 E-value=56 Score=33.92 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=28.5
Q ss_pred HHHHhhhcCEEEEeCCCcCCcccccccc-cCCCCceEEEcCCce
Q 007800 296 CGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHRV 338 (589)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~ 338 (589)
+.+.+.+||++|++|+++.-.+...+-. ..++..+|.||.++.
T Consensus 199 a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~~ 242 (349)
T PTZ00410 199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLERV 242 (349)
T ss_pred HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECcccc
Confidence 5566789999999999876554332221 123457788887764
No 474
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.07 E-value=1.5e+02 Score=25.27 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.0
Q ss_pred ccCceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCcc
Q 007800 87 SRGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 87 ~tg~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~~ 128 (589)
.+..-++++-|..| ..+.+.++..|...+.|++.||+.....
T Consensus 45 ~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 45 LTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCc
Confidence 33344444444555 4567788888999999999999875543
No 475
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=28.00 E-value=1.6e+02 Score=29.89 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCccc-chhhHHHHHHHHHHHhCCceEE
Q 007800 222 EAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rpviv~G~g~-~~~~~~~~l~~lae~~~~Pv~t 268 (589)
++..+++.+.|..+...+|++|-|. -.+++...+.+++++.+++++.
T Consensus 72 ~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~ 119 (304)
T cd02201 72 EESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVA 119 (304)
T ss_pred HHHHHHHHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEE
Confidence 3455666677777787777777444 3356778899999999987664
No 476
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=27.73 E-value=1.1e+02 Score=30.85 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=42.9
Q ss_pred CCcEEEEEcchhhcccHHHHHHHHHh---CCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEE
Q 007800 457 DKRVIACIGDGSFQVTAQEISTMIRC---GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK 533 (589)
Q Consensus 457 ~~~vv~i~GDGsf~~~~~el~ta~~~---~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~ 533 (589)
.|-+|++.|-|+ +++.|..+.+. +..+.+||-||. |..++|+.+|+ +++.
T Consensus 94 ~kiavl~Sg~g~---nl~al~~~~~~~~l~~~i~~visn~~-------------------~~~~~A~~~gI-----p~~~ 146 (289)
T PRK13010 94 PKVVIMVSKFDH---CLNDLLYRWRMGELDMDIVGIISNHP-------------------DLQPLAVQHDI-----PFHH 146 (289)
T ss_pred eEEEEEEeCCCc---cHHHHHHHHHCCCCCcEEEEEEECCh-------------------hHHHHHHHcCC-----CEEE
Confidence 355777777765 56677776653 456666666765 34577888888 5554
Q ss_pred eC----CHHHHHHHHHHhhhcCCCCeEEEEE
Q 007800 534 VR----SEDELTEAMKTATGEQKDSLCFIEV 560 (589)
Q Consensus 534 v~----~~~~l~~al~~a~~~~~~gp~viev 560 (589)
+. +.++.+..+.+.+. ..+|=+|-+
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~--~~~~Dlivl 175 (289)
T PRK13010 147 LPVTPDTKAQQEAQILDLIE--TSGAELVVL 175 (289)
T ss_pred eCCCcccccchHHHHHHHHH--HhCCCEEEE
Confidence 42 33334444444443 334444433
No 477
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=27.69 E-value=3.5e+02 Score=27.42 Aligned_cols=102 Identities=16% Similarity=-0.015 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCC-------CCeEEecCchhHHH------------Hhhhhhhh-
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAG------------YAADGYAR- 86 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~-------~i~~v~~~hE~~A~------------~~A~gyar- 86 (589)
-..++.+++.|++.|-=++||.=++.....+|+...-+ .+..+..-.+.+.. +..+=.+.
T Consensus 45 ~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~ 124 (296)
T PRK12570 45 AQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIG 124 (296)
T ss_pred HHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHcC
Confidence 34567888899998888888887777777777653211 12222222211111 11111111
Q ss_pred ccCceEEEEeCCcch-HHHHHHHHHhhhcCCcEEEEeCCCCcc
Q 007800 87 SRGVGACVVTFTVGG-LSVLNAIAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 87 ~tg~~v~~~t~GpG~-~n~~~~l~~A~~~~~PllvI~g~~~~~ 128 (589)
.+..-+++..+..|- -+.+.++-.|...+.+++.||+.....
T Consensus 125 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~ 167 (296)
T PRK12570 125 LTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSP 167 (296)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 233344444455554 467788888999999999999876544
No 478
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=27.44 E-value=2e+02 Score=33.60 Aligned_cols=118 Identities=14% Similarity=0.032 Sum_probs=70.8
Q ss_pred CccchhhHHHHHHHHhhhcC-------CCc--EEEEEcchhhccc--HHHHHHHHH---hCC-CeEEEEEeCCchhhhhh
Q 007800 437 QYGSIGWSVGATLGYAQAAK-------DKR--VIACIGDGSFQVT--AQEISTMIR---CGQ-RSIIFLINNGGYTIEVE 501 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~-------~~~--vv~i~GDGsf~~~--~~el~ta~~---~~l-~v~ivv~nN~~~~~~~~ 501 (589)
+-+.+-.--|...|...|.. ..+ .|++.||-+|.=- ..|..+..+ |.. +-+.||+||+..--.
T Consensus 296 NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTT-- 373 (906)
T COG0567 296 NPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTT-- 373 (906)
T ss_pred CcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCC--
Confidence 34555666678888776642 123 4588999888653 555555444 222 457788888843210
Q ss_pred hcCCCCCCCCCCChHHHHHHccCCCCCccEEEe--CCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 502 IHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV--RSEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 502 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v--~~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
....++. .+--..+|+.+++ +.+.| +|++....+.+-|++ ...+++++|++.+.+
T Consensus 374 --sp~~sRS-t~Y~TDvAKm~~a-----PifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYR 432 (906)
T COG0567 374 --SPADARS-TPYCTDVAKMIEA-----PIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYR 432 (906)
T ss_pred --CcccccC-CCCCCChhhccCC-----ceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCC
Confidence 0011111 1111335566776 66666 588888777777776 346789999999975
No 479
>PLN02537 diaminopimelate decarboxylase
Probab=27.35 E-value=2.3e+02 Score=30.06 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=49.6
Q ss_pred cchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHH
Q 007800 465 GDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAM 544 (589)
Q Consensus 465 GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al 544 (589)
|.|.+.-+..|+..+...+.+--.+|+++... ..+.-+.|...|+ . ..+++.++|+...
T Consensus 66 G~~~~~~S~~E~~~al~~G~~~~~ii~~g~~k---------------~~~~l~~a~~~gv-----~-i~ids~~el~~l~ 124 (410)
T PLN02537 66 GCGAVLVSGNELRLALRAGFDPTRCIFNGNGK---------------LLEDLVLAAQEGV-----F-VNVDSEFDLENIV 124 (410)
T ss_pred CCCEEEeCHHHHHHHHHcCCCcceEEEECCCC---------------CHHHHHHHHHCCC-----E-EEECCHHHHHHHH
Confidence 44555667899999888888888889885432 1234455666776 4 7899999998765
Q ss_pred HHhhhcCCCCeEEEEEEcCC
Q 007800 545 KTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 545 ~~a~~~~~~gp~viev~~~~ 564 (589)
+.+.. .+.+.=|.+++++
T Consensus 125 ~~a~~--~~~~~~v~lRvnp 142 (410)
T PLN02537 125 EAARI--AGKKVNVLLRINP 142 (410)
T ss_pred HHHHh--cCCCceEEEEECC
Confidence 54432 3333334455543
No 480
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=26.86 E-value=1.1e+02 Score=37.28 Aligned_cols=116 Identities=9% Similarity=-0.040 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHh------cCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCH
Q 007800 221 LEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (589)
Q Consensus 221 ~~~~i~~~~~~L~~------a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~ 294 (589)
-+++++.+++.|.. .++...+.+.+....-......+|...+|.+.+.......-.|...|...|.. . ...
T Consensus 162 WDEAldlIAakl~~i~~kYGPdsI~~fs~~~a~s~~s~aa~~Rfl~llGg~~~~~~d~~Cd~p~a~p~v~G~~--t-~~~ 238 (1235)
T TIGR01580 162 WQEVNELIAASNVYTVKNYGPDRVVGFSPIPAMSMVSYASGSRYLSLIGGTCLSFYDWYCDLPPASPQTWGEQ--T-DVP 238 (1235)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceEEEecCCCcccchhhHHHHHHHHhcCCccccCCCCcchhhHHhHhheecC--C-CCC
Confidence 34566666655543 33433333322221111223357888888876543322222233344444431 0 111
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~~ 340 (589)
...+ +.++|+||.+|+......+..+.. ..++.|+|.||++....
T Consensus 239 e~~D-~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~t 287 (1235)
T TIGR01580 239 ESAD-WYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEI 287 (1235)
T ss_pred Cchh-hhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChh
Confidence 1122 469999999998865443212111 22467999999987654
No 481
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=26.82 E-value=1.7e+02 Score=23.33 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEcc
Q 007800 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (589)
Q Consensus 226 ~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~ 270 (589)
++....|++.+--++++...+.. ...+.+..+|+..++|++...
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45556677666667777776765 578899999999999998744
No 482
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.77 E-value=1.6e+02 Score=30.07 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCC
Q 007800 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPH 282 (589)
Q Consensus 225 i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl 282 (589)
.+.+.+++ ..++..+++|.... .....+..++++.++|+++.......+++..|+
T Consensus 56 ~~~~~~li-~~~~v~~iiG~~~s--~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~ 110 (344)
T cd06348 56 INAFQTLI-NKDRVLAIIGPTLS--QQAFAADPIAERAGVPVVGPSNTAKGIPEIGPY 110 (344)
T ss_pred HHHHHHHh-hhcCceEEECCCCc--HHHHhhhHHHHhCCCCEEeccCCCCCcCCCCCe
Confidence 33444444 45577888886543 345566789999999999865443334444444
No 483
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=26.75 E-value=1e+02 Score=29.83 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhc-CCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 222 EAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 222 ~~~i~~~~~~L~~a-~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
.+.++.+.+++..+ .|+.|++|.|+.. +.+..|.+++|+-
T Consensus 155 ~eg~~~l~~li~~a~gri~Im~GaGV~~----~N~~~l~~~tg~~ 195 (241)
T COG3142 155 LEGLDLLKRLIEQAKGRIIIMAGAGVRA----ENIAELVLLTGVT 195 (241)
T ss_pred hhhHHHHHHHHHHhcCCEEEEeCCCCCH----HHHHHHHHhcCch
Confidence 44677888888876 8999999999964 5677788777753
No 484
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.65 E-value=2.1e+02 Score=25.05 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcch-HH-HHHH
Q 007800 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGG-LS-VLNA 107 (589)
Q Consensus 31 ~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~-~n-~~~~ 107 (589)
+.+++.+.+..-=+++|.=++ .....+.-.+-..+-.+.+.....+-|+-.-+...+.. .+++.+ +.|. .. ..-.
T Consensus 4 ~~~a~~~~~~~~i~~~G~G~s-~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is-~~g~t~~~~~~~ 81 (153)
T cd05009 4 KELAEKLKEAKSFYVLGRGPN-YGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLA-PEDRLEEKLESL 81 (153)
T ss_pred HHHHHHHhccCcEEEEcCCCC-HHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEe-cCChhHHHHHHH
Confidence 567777877666677777333 33333321111123334555554444433334445545 444443 3343 33 4456
Q ss_pred HHHhhhcCCcEEEEeCCCC
Q 007800 108 IAGAYSENLPVICIVGGPN 126 (589)
Q Consensus 108 l~~A~~~~~PllvI~g~~~ 126 (589)
+..+...+.|++.|++...
T Consensus 82 ~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 82 IKEVKARGAKVIVITDDGD 100 (153)
T ss_pred HHHHHHcCCEEEEEecCCc
Confidence 6667778999999998753
No 485
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=26.59 E-value=1.8e+02 Score=24.97 Aligned_cols=44 Identities=9% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEc
Q 007800 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (589)
Q Consensus 226 ~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt 269 (589)
++..+.|++.+-.++++...+......+.+..+|+..++|++..
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV 75 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 45556677777777777777754335689999999999997753
No 486
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=26.37 E-value=51 Score=29.06 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=27.6
Q ss_pred CEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 238 pviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
.|+++|..+-.++...++.+|+++++++.+-
T Consensus 11 VVFivGfRvLtSdtR~A~~~Ls~rL~I~Pv~ 41 (148)
T PF06711_consen 11 VVFIVGFRVLTSDTRRAIRRLSERLNIKPVY 41 (148)
T ss_pred HhheeeEEecccchHHHHHHHHHHhCCCcee
Confidence 4789999999999999999999999987664
No 487
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=26.35 E-value=80 Score=31.34 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEcc
Q 007800 229 ADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (589)
Q Consensus 229 ~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~ 270 (589)
++.+.+...-+|+.|.+....+....=..+||.||||.+|..
T Consensus 104 aa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 104 AAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred HHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeE
Confidence 344445555599999999887777788889999999999833
No 488
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=26.34 E-value=2.3e+02 Score=27.15 Aligned_cols=68 Identities=15% Similarity=0.014 Sum_probs=48.5
Q ss_pred EEEEEc-chhhcc--cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCC
Q 007800 460 VIACIG-DGSFQV--TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRS 536 (589)
Q Consensus 460 vv~i~G-DGsf~~--~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~ 536 (589)
++.+.| |-.++| .++.+--|.+.++|+-++=+--+ . .=+.+-+.+-|+ .|..|++
T Consensus 157 iftlsG~d~~~qYip~mnCiF~Aqk~~ipI~v~~i~g~--s---------------~fl~Q~~daTgG-----~Yl~ve~ 214 (296)
T COG5242 157 IFTLSGRDRKDQYIPYMNCIFAAQKFGIPISVFSIFGN--S---------------KFLLQCCDATGG-----DYLTVED 214 (296)
T ss_pred EEEecCchhhhhhchhhhheeehhhcCCceEEEEecCc--c---------------HHHHHHhhccCC-----eeEeecC
Confidence 334458 888988 58888888889999877644211 1 114556777888 8999999
Q ss_pred HHHHHHHHHHhhh
Q 007800 537 EDELTEAMKTATG 549 (589)
Q Consensus 537 ~~~l~~al~~a~~ 549 (589)
++.|-+-|-.++-
T Consensus 215 ~eGllqyL~~~lf 227 (296)
T COG5242 215 TEGLLQYLLSLLF 227 (296)
T ss_pred chhHHHHHHHHhc
Confidence 9998888877764
No 489
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=26.28 E-value=2.1e+02 Score=23.04 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEcc
Q 007800 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (589)
Q Consensus 225 i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~ 270 (589)
+.+..+.|.+.+--++++...+.. .-...+..+||..++|++...
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~-~vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEV-YLMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 456677777666556665555553 477899999999999999744
No 490
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=26.25 E-value=4.2e+02 Score=26.49 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcchHH--HHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcch-HHHHHH
Q 007800 31 RHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG-LSVLNA 107 (589)
Q Consensus 31 ~~i~~~L~~~GV~~vfg~pG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~-~n~~~~ 107 (589)
+.+++.|.+..--++||+-++.... +...|.+ .++.+... ++......+. ...+..-++++-+-.|- -+.+..
T Consensus 131 ~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~-~g~~~~~~-~d~~~~~~~~--~~~~~~Dl~I~iS~sG~t~~~~~~ 206 (292)
T PRK11337 131 HRAARFFYQARQRDLYGAGGSAAIARDVQHKFLR-IGVRCQAY-DDAHIMLMSA--ALLQEGDVVLVVSHSGRTSDVIEA 206 (292)
T ss_pred HHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhh-CCCeEEEc-CCHHHHHHHH--hcCCCCCEEEEEeCCCCCHHHHHH
Confidence 5567777777777888885543222 2222333 35655443 3332222222 23333444444445554 457777
Q ss_pred HHHhhhcCCcEEEEeCCCCcc
Q 007800 108 IAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 108 l~~A~~~~~PllvI~g~~~~~ 128 (589)
+..|...+.|+|.||+.....
T Consensus 207 ~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 207 VELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred HHHHHHCCCeEEEEeCCCCCh
Confidence 788999999999999875543
No 491
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=26.25 E-value=91 Score=31.24 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=30.4
Q ss_pred cCCCEEEeCcccchh--------------h---HHHHHHHHHHHhCCceEEccCCccCCC
Q 007800 235 AVKPVLVGGPNIRVA--------------K---AQKAFIELADATGYPIAIMPSGKGLVP 277 (589)
Q Consensus 235 a~rpviv~G~g~~~~--------------~---~~~~l~~lae~~~~Pv~tt~~~~g~~~ 277 (589)
..+||+|+|..-.+. + -.-.+.++||+++.||+|=..-.|..|
T Consensus 105 ~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAyp 164 (317)
T COG0825 105 GGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYP 164 (317)
T ss_pred CCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 468999999876541 1 123466899999999999666555554
No 492
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=26.07 E-value=4.2e+02 Score=22.67 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHhCCCeEEEEEeCCchh-hhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh
Q 007800 471 VTAQEISTMIRCGQRSIIFLINNGGYT-IEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 549 (589)
Q Consensus 471 ~~~~el~ta~~~~l~v~ivv~nN~~~~-~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~ 549 (589)
....+...+.+.+---.+|+-+|-.-. + .-+|..+|+-+++ ++..+.+.++|-.++-
T Consensus 29 ~G~~~v~kaikkgka~LVilA~D~s~~~~-------------~~~i~~lc~~~~I-----p~~~~~sk~eLG~a~G---- 86 (117)
T TIGR03677 29 KGTNEVTKAVERGIAKLVVIAEDVEPPEI-------------VAHLPALCEEKGI-----PYVYVKKKEDLGAAAG---- 86 (117)
T ss_pred EcHHHHHHHHHcCCccEEEEeCCCCcHHH-------------HHHHHHHHHHcCC-----CEEEeCCHHHHHHHhC----
Confidence 345677777776655566666666321 1 1268889999998 8999999999888762
Q ss_pred cCCCCeEEEEEEcCCCCChHHHHHHHHHhhhh
Q 007800 550 EQKDSLCFIEVFVHKDDTSKELLEWGSRVSAA 581 (589)
Q Consensus 550 ~~~~gp~viev~~~~~~~~~~~~~~~~~~~~~ 581 (589)
...+..+-..+|.......+.++.+.++..
T Consensus 87 --k~~~~svvaI~d~g~a~~~~~~~~~~i~~~ 116 (117)
T TIGR03677 87 --LEVGAASAAIVDEGKAEELLKEIIEKVEAL 116 (117)
T ss_pred --CCCCeEEEEEEchhhhHHHHHHHHHHHHhc
Confidence 223555566678777777777777777653
No 493
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.86 E-value=1.4e+02 Score=25.42 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 224 ~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
.++++++.|.++++ +++.|.|... .....+....+.++.++..
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~-~~a~~~~~~l~~~~~~~~~ 44 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSG-LVAEYLAYKLLRLGKPVVL 44 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchH-HHHHHHHHHHHHcCCceEE
Confidence 47889999998865 8888888754 3556666667777776654
No 494
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=25.70 E-value=2e+02 Score=23.16 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCc
Q 007800 251 AQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIF 313 (589)
Q Consensus 251 ~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~ 313 (589)
+.+.|++-|+++|+.+--...|..-+ .++ ...+-+.++|+||++|...
T Consensus 16 Aae~L~~aA~~~G~~i~VE~qg~~g~--~~~-------------lt~~~i~~Ad~viia~d~~ 63 (85)
T TIGR00829 16 AAEALEKAAKKRGWEVKVETQGSVGA--QNA-------------LTAEDIAAADGVILAADRE 63 (85)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCc--cCC-------------CCHHHHHhCCEEEEeccCC
Confidence 57889999999999988766653111 111 1235568999999999653
No 495
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=25.63 E-value=1.1e+02 Score=33.07 Aligned_cols=44 Identities=27% Similarity=0.201 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
.+.++++++.|.++++++|+.|.+.........+..|+..+|-.
T Consensus 252 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~al~~L~~~~G~~ 295 (472)
T cd02771 252 KEKAARIAARLTGAKKPLIVSGTLSGSLELIKAAANLAKALKRR 295 (472)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcCcHHHHHHHHHHHHHhcCC
Confidence 35788999999999999999999885445677777888777643
No 496
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=25.62 E-value=89 Score=35.33 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------cCCCEEEeCcccch--hhHHHHHHHHHHHhCCce-EEccCCccCCCCCCCCceeeecCCCC
Q 007800 222 EAAVEATADFLNK------AVKPVLVGGPNIRV--AKAQKAFIELADATGYPI-AIMPSGKGLVPEHHPHFIGTYWGAVS 292 (589)
Q Consensus 222 ~~~i~~~~~~L~~------a~rpviv~G~g~~~--~~~~~~l~~lae~~~~Pv-~tt~~~~g~~~~~~pl~~G~~~g~~~ 292 (589)
+++++.+++.|++ .+...+..|.+... ......+.+|+..+|.++ .....+.+.....++..+|.. .
T Consensus 81 DeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~~~~~~~~~~~G~~----~ 156 (617)
T cd02770 81 DEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYLNYYGTYSWAQITTATPYTYGAA----A 156 (617)
T ss_pred HHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCccCCCCCccHhHHhhhhceEEecC----C
Q ss_pred CHHHHHHhhhcCEEEEeCCCcCCcccc--cccccC-----CCCceEEEcC
Q 007800 293 SSFCGEIVESADAYVFVGPIFNDYSSV--GYSLLI-----KKEKAIIVQP 335 (589)
Q Consensus 293 ~~~~~~~l~~aD~vl~lG~~~~~~~~~--~~~~~~-----~~~~~i~id~ 335 (589)
......-+.+||+||++|+........ ...... ++.++|.||+
T Consensus 157 ~~~~~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDP 206 (617)
T cd02770 157 SGSSLDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDP 206 (617)
T ss_pred CCCCHHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECC
No 497
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=25.32 E-value=1.9e+02 Score=23.07 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEcc
Q 007800 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (589)
Q Consensus 227 ~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~ 270 (589)
+....|++.+--++++...+. .+..+.+..+|+..++|+....
T Consensus 15 ~vlkaIk~gkakLViiA~Da~-~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAE-EHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEeC
Confidence 445556666666666666666 3688999999999999997533
No 498
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=25.17 E-value=3.2e+02 Score=26.70 Aligned_cols=85 Identities=12% Similarity=0.041 Sum_probs=49.2
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccc-cccccccCCCeeEeccCccchhhHHHHHHHHhhh-cCCCcEEEEEcch---h
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDSWFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQA-AKDKRVIACIGDG---S 468 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala-~~~~~vv~i~GDG---s 468 (589)
..+.+...+.+++++.|+.|.|+.... ..++.. ++...+++ +++.|. .+. .|+-.++++-|.- +
T Consensus 81 ~~IA~~Aa~lI~~gd~Ifld~GtT~~~l~~~L~~-~~ltVvTN--------s~~ia~--~l~~~~~~~vil~GG~~~~~~ 149 (240)
T PRK10411 81 ADIAREALAWIEEGMVIALDASSTCWYLARQLPD-INIQVFTN--------SHPICQ--ELGKRERIQLISSGGTLERKY 149 (240)
T ss_pred HHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhhCC-CCeEEEeC--------CHHHHH--HHhcCCCCEEEEECCEEeCCC
Confidence 346677777888999999999987643 233332 23344443 233332 233 3555666666631 2
Q ss_pred -hcccHHHHHHHHHhCCCeEEE
Q 007800 469 -FQVTAQEISTMIRCGQRSIIF 489 (589)
Q Consensus 469 -f~~~~~el~ta~~~~l~v~iv 489 (589)
.+++...+..+.+++.+..++
T Consensus 150 ~~~~G~~a~~~l~~~~~d~afi 171 (240)
T PRK10411 150 GCYVNPSLISQLKSLEIDLFIF 171 (240)
T ss_pred CceECHHHHHHHHhcCCCEEEE
Confidence 233455566667788886654
No 499
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=25.08 E-value=3.8e+02 Score=29.94 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=39.2
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCch
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~ 496 (589)
.++.+++|++++ +.+++..+==.+|.+-...|..+.-..+|+++++.+-.+-
T Consensus 248 aA~~~a~GAs~a--G~Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~~~R~gp 299 (562)
T TIGR03710 248 AAINMAIGASYA--GARAMTATSGPGFALMTEALGLAGMTETPLVIVDVQRGGP 299 (562)
T ss_pred HHHHHHHhHHhc--CCceeecCCCCChhHhHHHHhHHHhccCCEEEEEcccCCC
Confidence 577899999997 5666666666666655566677777899999999888754
No 500
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=25.07 E-value=2.3e+02 Score=25.46 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccch-------hhHHHHHHHHHHHhCCceEEcc
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRV-------AKAQKAFIELADATGYPIAIMP 270 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~-------~~~~~~l~~lae~~~~Pv~tt~ 270 (589)
....++++++.+++...++|+++.-... ..-.+.++++|++.+++++..+
T Consensus 86 ~~~~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~d~~ 142 (177)
T cd01822 86 TRANLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLVPFF 142 (177)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEechH
Confidence 4556778888887777778887643211 1345788899999999988643
Done!